Query gi|254780421|ref|YP_003064834.1| hypothetical protein CLIBASIA_01530 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 218
No_of_seqs 126 out of 1065
Neff 8.5
Searched_HMMs 23785
Date Mon May 30 11:25:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780421.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ho1_A Type 4 fimbrial biogene 99.0 1.5E-07 6.1E-12 63.9 19.9 141 52-198 35-178 (252)
2 2xev_A YBGF; tetratricopeptide 98.9 4.6E-08 1.9E-12 67.0 13.8 116 93-210 6-123 (129)
3 2xev_A YBGF; tetratricopeptide 98.9 6.4E-08 2.7E-12 66.1 12.8 117 54-171 3-122 (129)
4 2vq2_A PILW, putative fimbrial 98.8 1.1E-06 4.8E-11 58.4 18.9 131 57-192 46-177 (225)
5 1w3b_A UDP-N-acetylglucosamine 98.8 1.6E-06 6.6E-11 57.5 19.1 136 61-203 245-381 (388)
6 2ho1_A Type 4 fimbrial biogene 98.8 1.4E-06 5.9E-11 57.8 18.6 135 57-196 75-209 (252)
7 2vsy_A XCC0866; transferase, g 98.8 2.5E-07 1.1E-11 62.4 14.4 131 66-203 2-133 (568)
8 2r5s_A Uncharacterized protein 98.8 1.1E-07 4.8E-12 64.5 11.7 154 55-215 8-163 (176)
9 3ieg_A DNAJ homolog subfamily 98.8 4E-06 1.7E-10 55.0 19.6 139 63-202 198-346 (359)
10 3ieg_A DNAJ homolog subfamily 98.7 7.7E-06 3.2E-10 53.2 19.3 146 58-205 159-316 (359)
11 2vq2_A PILW, putative fimbrial 98.7 3.2E-06 1.3E-10 55.6 17.3 127 58-190 13-141 (225)
12 3cv0_A Peroxisome targeting si 98.7 5.7E-06 2.4E-10 54.0 18.5 118 66-190 151-268 (327)
13 2fo7_A Synthetic consensus TPR 98.7 1.5E-06 6.5E-11 57.5 15.2 131 55-192 2-133 (136)
14 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 5.2E-11 58.1 14.6 135 52-195 5-154 (213)
15 3gyz_A Chaperone protein IPGC; 98.7 7.2E-07 3E-11 59.6 13.2 116 89-210 36-151 (151)
16 1w3b_A UDP-N-acetylglucosamine 98.7 6.2E-06 2.6E-10 53.8 17.8 136 60-202 210-346 (388)
17 1fch_A Peroxisomal targeting s 98.7 8.5E-06 3.6E-10 52.9 18.5 119 68-191 196-314 (368)
18 3hym_B Cell division cycle pro 98.7 1.8E-06 7.5E-11 57.1 14.8 148 64-214 170-322 (330)
19 2gw1_A Mitochondrial precursor 98.7 8.8E-07 3.7E-11 59.0 13.2 125 59-190 276-400 (514)
20 3fp2_A TPR repeat-containing p 98.7 1.5E-06 6.1E-11 57.7 14.3 119 64-189 287-405 (537)
21 2vgx_A Chaperone SYCD; alterna 98.6 6.5E-07 2.7E-11 59.9 11.7 138 69-213 3-143 (148)
22 1fch_A Peroxisomal targeting s 98.6 8.1E-07 3.4E-11 59.3 11.9 73 129-202 219-292 (368)
23 2pl2_A Hypothetical conserved 98.6 1.1E-05 4.8E-10 52.2 17.7 139 56-200 42-189 (217)
24 3cv0_A Peroxisome targeting si 98.6 1.3E-06 5.5E-11 58.0 12.8 137 61-202 97-247 (327)
25 3mkr_A Coatomer subunit epsilo 98.6 1E-05 4.4E-10 52.4 17.3 122 63-189 140-261 (291)
26 3fp2_A TPR repeat-containing p 98.6 1.3E-05 5.7E-10 51.7 17.6 125 64-195 321-495 (537)
27 3edt_B KLC 2, kinesin light ch 98.6 1.2E-05 5.1E-10 52.0 17.4 102 89-190 85-197 (283)
28 2e2e_A Formate-dependent nitri 98.6 1.6E-06 6.6E-11 57.5 12.4 125 64-195 21-148 (177)
29 3mv2_B Coatomer subunit epsilo 98.5 6.2E-06 2.6E-10 53.8 14.9 136 54-191 101-240 (310)
30 2xcb_A PCRH, regulatory protei 98.5 1.9E-06 8.1E-11 56.9 12.2 119 88-211 17-138 (142)
31 2gw1_A Mitochondrial precursor 98.5 5.5E-06 2.3E-10 54.1 14.1 131 64-197 349-484 (514)
32 3hym_B Cell division cycle pro 98.5 1.4E-05 6E-10 51.6 15.5 138 61-204 133-279 (330)
33 2q7f_A YRRB protein; TPR, prot 98.5 6.3E-06 2.7E-10 53.7 13.5 133 61-200 99-232 (243)
34 2q7f_A YRRB protein; TPR, prot 98.5 4.5E-05 1.9E-09 48.5 17.7 138 59-203 63-201 (243)
35 3mv2_B Coatomer subunit epsilo 98.5 5.1E-06 2.1E-10 54.3 12.7 137 62-202 75-218 (310)
36 1qqe_A Vesicular transport pro 98.5 2.9E-05 1.2E-09 49.6 16.6 138 54-191 77-228 (292)
37 1xnf_A Lipoprotein NLPI; TPR, 98.4 3.7E-05 1.5E-09 49.0 16.5 131 59-193 83-246 (275)
38 1ihg_A Cyclophilin 40; ppiase 98.4 1.7E-05 7.3E-10 51.0 13.7 119 94-213 228-358 (370)
39 2dba_A Smooth muscle cell asso 98.3 1.5E-05 6.1E-10 51.5 12.8 115 91-211 30-144 (148)
40 1na0_A Designed protein CTPR3; 98.3 2.8E-05 1.2E-09 49.7 14.3 111 88-203 8-119 (125)
41 1nzn_A CGI-135 protein, fissio 98.3 3.4E-05 1.4E-09 49.2 14.2 99 95-197 7-109 (126)
42 1hz4_A MALT regulatory protein 98.3 0.00016 6.7E-09 45.1 19.1 61 129-189 255-320 (373)
43 3mkr_A Coatomer subunit epsilo 98.3 7.8E-05 3.3E-09 47.0 15.9 141 60-211 108-249 (291)
44 2vyi_A SGTA protein; chaperone 98.3 3.8E-05 1.6E-09 48.9 14.0 107 90-201 13-119 (131)
45 2r5s_A Uncharacterized protein 98.3 1.6E-05 6.8E-10 51.2 12.1 130 55-190 42-172 (176)
46 1a17_A Serine/threonine protei 98.3 4E-05 1.7E-09 48.8 13.9 98 51-154 11-108 (166)
47 3edt_B KLC 2, kinesin light ch 98.3 0.00011 4.6E-09 46.0 15.7 129 62-190 94-280 (283)
48 1elw_A TPR1-domain of HOP; HOP 98.3 4E-05 1.7E-09 48.8 13.4 104 92-200 7-110 (118)
49 3ffl_A Anaphase-promoting comp 98.3 9.7E-06 4.1E-10 52.6 10.2 135 56-209 23-164 (167)
50 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.6E-05 6.8E-10 51.2 11.2 61 91-155 319-379 (457)
51 1p5q_A FKBP52, FK506-binding p 98.2 6.2E-05 2.6E-09 47.6 14.0 60 91-154 198-257 (336)
52 1hxi_A PEX5, peroxisome target 98.2 1E-05 4.3E-10 52.5 9.2 98 91-193 19-116 (121)
53 1wao_1 Serine/threonine protei 98.2 2.7E-05 1.1E-09 49.9 11.0 91 98-193 15-105 (477)
54 1elr_A TPR2A-domain of HOP; HO 98.2 0.00011 4.6E-09 46.1 14.0 107 89-199 4-116 (131)
55 1xnf_A Lipoprotein NLPI; TPR, 98.2 0.00032 1.3E-08 43.2 16.3 99 88-191 42-140 (275)
56 2fbn_A 70 kDa peptidylprolyl i 98.2 0.0001 4.3E-09 46.3 13.8 80 129-209 90-169 (198)
57 2fo7_A Synthetic consensus TPR 98.2 7.7E-05 3.2E-09 47.0 13.1 114 91-209 3-116 (136)
58 2c2l_A CHIP, carboxy terminus 98.1 4.6E-05 1.9E-09 48.4 11.9 93 54-152 5-97 (281)
59 2vyi_A SGTA protein; chaperone 98.1 0.00012 4.9E-09 45.9 13.5 120 51-177 10-129 (131)
60 3gw4_A Uncharacterized protein 98.1 0.00021 9E-09 44.3 14.7 155 57-212 30-196 (203)
61 3gw4_A Uncharacterized protein 98.1 0.00047 2E-08 42.2 19.0 126 63-190 2-135 (203)
62 2ooe_A Cleavage stimulation fa 98.1 0.00027 1.1E-08 43.6 14.8 130 60-195 328-458 (530)
63 1na0_A Designed protein CTPR3; 98.1 0.00017 6.9E-09 45.0 13.5 115 55-176 11-125 (125)
64 1a17_A Serine/threonine protei 98.1 0.00031 1.3E-08 43.3 14.8 107 91-202 15-121 (166)
65 1zbp_A Hypothetical protein VP 98.1 4E-05 1.7E-09 48.8 10.0 129 59-193 3-131 (273)
66 2ifu_A Gamma-SNAP; membrane fu 98.1 0.00056 2.3E-08 41.7 18.2 133 60-192 83-225 (307)
67 2vgx_A Chaperone SYCD; alterna 98.0 0.00026 1.1E-08 43.8 13.6 97 52-154 20-116 (148)
68 2if4_A ATFKBP42; FKBP-like, al 98.0 2.2E-05 9.4E-10 50.3 8.1 136 50-190 176-327 (338)
69 1hh8_A P67PHOX, NCF-2, neutrop 98.0 5.5E-05 2.3E-09 47.9 9.8 95 57-153 41-147 (213)
70 2hr2_A Hypothetical protein; N 98.0 0.00032 1.3E-08 43.2 13.2 119 93-211 15-158 (159)
71 1hz4_A MALT regulatory protein 98.0 0.00018 7.4E-09 44.8 11.9 127 63-189 24-162 (373)
72 1pc2_A Mitochondria fission pr 98.0 0.00014 6.1E-09 45.3 11.3 95 98-196 7-105 (152)
73 2vsy_A XCC0866; transferase, g 97.9 0.00079 3.3E-08 40.8 14.5 129 55-190 25-156 (568)
74 3gyz_A Chaperone protein IPGC; 97.9 0.00062 2.6E-08 41.4 13.9 99 52-156 35-133 (151)
75 2if4_A ATFKBP42; FKBP-like, al 97.9 0.00024 1E-08 44.0 11.8 111 89-200 179-302 (338)
76 1qqe_A Vesicular transport pro 97.9 0.0011 4.7E-08 39.8 17.2 156 38-193 21-189 (292)
77 3k9i_A BH0479 protein; putativ 97.9 6.4E-05 2.7E-09 47.5 8.2 96 103-200 4-99 (117)
78 2xcb_A PCRH, regulatory protei 97.8 0.00049 2E-08 42.1 12.2 98 52-155 17-114 (142)
79 1hxi_A PEX5, peroxisome target 97.8 0.00017 6.9E-09 45.0 9.7 102 54-161 18-119 (121)
80 1elw_A TPR1-domain of HOP; HOP 97.8 0.00094 3.9E-08 40.3 13.1 114 52-172 3-116 (118)
81 2pl2_A Hypothetical conserved 97.8 0.0001 4.3E-09 46.3 8.2 144 58-204 10-160 (217)
82 2ifu_A Gamma-SNAP; membrane fu 97.8 0.0018 7.4E-08 38.6 16.5 95 59-153 121-221 (307)
83 3dra_A Protein farnesyltransfe 97.7 0.0019 8.2E-08 38.3 15.4 130 62-194 155-290 (306)
84 2uy1_A Cleavage stimulation fa 97.7 0.0021 9E-08 38.1 14.9 121 66-190 226-348 (493)
85 2ooe_A Cleavage stimulation fa 97.7 0.0013 5.6E-08 39.4 13.0 122 66-192 299-421 (530)
86 2h6f_A Protein farnesyltransfe 97.7 0.0013 5.7E-08 39.3 13.0 25 165-189 203-227 (382)
87 2kat_A Uncharacterized protein 97.7 0.00039 1.7E-08 42.6 9.6 80 106-190 2-81 (115)
88 1wao_1 Serine/threonine protei 97.6 4.8E-05 2E-09 48.3 4.3 124 55-185 8-133 (477)
89 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0017 7.3E-08 38.6 12.1 109 91-200 270-389 (457)
90 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00098 4.1E-08 40.2 10.7 139 46-189 31-184 (198)
91 2c2l_A CHIP, carboxy terminus 97.6 0.0016 6.9E-08 38.8 11.7 93 94-191 9-101 (281)
92 3n71_A Histone lysine methyltr 97.5 0.0038 1.6E-07 36.5 17.7 136 55-190 311-463 (490)
93 1nzn_A CGI-135 protein, fissio 97.5 0.00088 3.7E-08 40.5 9.8 108 63-175 11-121 (126)
94 1p5q_A FKBP52, FK506-binding p 97.5 0.0039 1.7E-07 36.4 13.1 113 92-205 150-273 (336)
95 2dba_A Smooth muscle cell asso 97.5 0.0041 1.7E-07 36.3 13.0 97 55-155 30-127 (148)
96 2kck_A TPR repeat; tetratricop 97.5 0.00062 2.6E-08 41.4 8.7 96 91-190 8-105 (112)
97 2kat_A Uncharacterized protein 97.4 0.00091 3.8E-08 40.4 9.1 79 70-154 2-80 (115)
98 2uy1_A Cleavage stimulation fa 97.4 0.0047 2E-07 36.0 12.5 96 91-191 215-315 (493)
99 1y8m_A FIS1; mitochondria, unk 97.4 0.0038 1.6E-07 36.5 11.8 67 129-195 41-110 (144)
100 2kc7_A BFR218_protein; tetratr 97.4 0.00073 3.1E-08 41.0 7.8 58 60-118 7-64 (99)
101 1ihg_A Cyclophilin 40; ppiase 97.3 0.0081 3.4E-07 34.5 12.2 117 46-172 235-351 (370)
102 1na3_A Designed protein CTPR2; 97.2 0.0039 1.6E-07 36.5 10.1 73 129-202 11-84 (91)
103 3dss_A Geranylgeranyl transfer 97.2 0.0019 7.8E-08 38.5 8.4 63 141-203 252-317 (331)
104 3dss_A Geranylgeranyl transfer 97.2 0.0097 4.1E-07 34.0 19.1 119 70-190 47-173 (331)
105 1pc2_A Mitochondria fission pr 97.2 0.0033 1.4E-07 36.9 9.3 105 64-173 9-116 (152)
106 3ma5_A Tetratricopeptide repea 97.1 0.00069 2.9E-08 41.1 5.7 63 128-191 8-70 (100)
107 3n71_A Histone lysine methyltr 97.1 0.011 4.8E-07 33.6 13.2 100 91-190 311-421 (490)
108 3k9i_A BH0479 protein; putativ 97.1 0.0036 1.5E-07 36.7 9.0 87 67-157 4-91 (117)
109 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0054 2.3E-07 35.6 9.7 91 91-213 7-97 (104)
110 3ffl_A Anaphase-promoting comp 97.1 0.0017 7.3E-08 38.6 7.1 104 53-173 63-166 (167)
111 1na3_A Designed protein CTPR2; 97.1 0.0049 2.1E-07 35.8 9.4 83 89-176 9-91 (91)
112 2kc7_A BFR218_protein; tetratr 97.0 0.0074 3.1E-07 34.7 10.1 70 131-200 4-73 (99)
113 3dra_A Protein farnesyltransfe 96.7 0.025 1.1E-06 31.5 13.5 56 65-120 45-100 (306)
114 2hr2_A Hypothetical protein; N 96.6 0.029 1.2E-06 31.1 12.6 100 53-152 11-127 (159)
115 2kck_A TPR repeat; tetratricop 96.6 0.029 1.2E-06 31.1 10.9 88 57-148 10-98 (112)
116 1zu2_A Mitochondrial import re 96.5 0.0096 4E-07 34.0 7.5 26 177-202 106-131 (158)
117 2e2e_A Formate-dependent nitri 96.4 0.014 6E-07 33.0 7.7 94 59-158 50-146 (177)
118 1elr_A TPR2A-domain of HOP; HO 96.3 0.043 1.8E-06 30.0 14.8 94 59-154 10-106 (131)
119 1b89_A Protein (clathrin heavy 96.3 0.0032 1.4E-07 37.0 4.0 93 93-199 152-244 (449)
120 1ya0_A SMG-7 transcript varian 96.1 0.059 2.5E-06 29.1 15.2 112 91-209 122-233 (497)
121 1y8m_A FIS1; mitochondria, unk 96.1 0.06 2.5E-06 29.1 10.9 101 70-174 19-123 (144)
122 2ond_A Cleavage stimulation fa 96.0 0.061 2.6E-06 29.1 18.4 137 51-193 81-234 (308)
123 3ma5_A Tetratricopeptide repea 96.0 0.034 1.4E-06 30.6 8.2 63 89-155 7-69 (100)
124 3bee_A Putative YFRE protein; 96.0 0.021 9E-07 31.9 7.0 67 128-195 9-76 (93)
125 1b89_A Protein (clathrin heavy 95.9 0.071 3E-06 28.7 11.5 116 61-187 185-307 (449)
126 2h6f_A Protein farnesyltransfe 95.9 0.073 3.1E-06 28.6 15.4 50 68-119 147-196 (382)
127 2pqr_A Mitochondria fission 1 95.9 0.043 1.8E-06 30.0 8.1 64 129-192 41-107 (129)
128 2v5f_A Prolyl 4-hydroxylase su 95.7 0.018 7.7E-07 32.3 5.8 71 53-123 5-80 (104)
129 2ond_A Cleavage stimulation fa 95.5 0.1 4.3E-06 27.7 17.5 141 66-211 77-218 (308)
130 1klx_A Cysteine rich protein B 95.3 0.12 5.1E-06 27.2 11.4 111 68-193 10-128 (138)
131 3e4b_A ALGK; tetratricopeptide 95.2 0.13 5.5E-06 27.0 14.1 127 68-207 232-366 (452)
132 3bee_A Putative YFRE protein; 94.8 0.16 6.9E-06 26.4 8.2 66 57-124 12-78 (93)
133 2pqr_A Mitochondria fission 1 94.6 0.19 7.8E-06 26.1 9.6 92 78-173 28-122 (129)
134 1zbp_A Hypothetical protein VP 94.6 0.16 6.7E-06 26.5 7.6 80 96-180 4-83 (273)
135 3pdn_A SET and MYND domain-con 94.4 0.2 8.4E-06 25.9 15.6 92 99-190 296-398 (428)
136 1ouv_A Conserved hypothetical 94.2 0.22 9.4E-06 25.6 10.1 27 164-190 184-214 (273)
137 1ya0_A SMG-7 transcript varian 94.0 0.25 1.1E-05 25.3 9.5 78 90-172 153-230 (497)
138 2kog_A Vesicle-associated memb 92.5 0.12 5.2E-06 27.2 4.2 34 8-41 83-116 (119)
139 3hd7_A Vesicle-associated memb 88.4 0.58 2.4E-05 23.0 4.6 32 9-40 56-87 (91)
140 3bu8_A Telomeric repeat-bindin 78.7 2.5 0.00011 19.0 9.2 70 105-174 88-161 (235)
141 2ff4_A Probable regulatory pro 77.7 2.7 0.00011 18.9 14.4 116 92-208 118-257 (388)
142 3esl_A Checkpoint serine/threo 77.5 2.8 0.00012 18.8 12.5 93 103-196 51-149 (202)
143 3lvg_A Clathrin heavy chain 1; 76.5 0.11 4.8E-06 27.4 -2.9 19 167-185 459-477 (624)
144 1qsa_A Protein (soluble lytic 68.7 4.5 0.00019 17.5 15.1 25 165-189 322-346 (618)
145 2qsb_A UPF0147 protein TA0600; 65.6 5.2 0.00022 17.1 9.2 81 99-210 6-86 (89)
146 2qfc_A PLCR protein; TPR, HTH, 64.3 5.5 0.00023 17.0 20.4 149 62-210 124-287 (293)
147 3kez_A Putative sugar binding 59.7 6.6 0.00028 16.5 4.4 29 90-118 197-225 (461)
148 2crb_A Nuclear receptor bindin 58.9 6.8 0.00029 16.4 5.1 26 163-188 16-41 (97)
149 1rz2_A Conserved hypothetical 57.2 2.2 9.1E-05 19.5 0.4 42 19-60 11-52 (254)
150 3mkq_B Coatomer subunit alpha; 51.4 9.1 0.00038 15.6 9.9 46 63-115 15-60 (177)
151 2qzg_A Conserved uncharacteriz 50.9 9.2 0.00039 15.6 9.1 79 102-211 13-91 (94)
152 3jq1_A SUSD superfamily protei 50.0 9.5 0.0004 15.5 3.7 32 88-119 179-210 (481)
153 3mcx_A SUSD superfamily protei 49.9 9.5 0.0004 15.5 3.8 28 90-117 203-230 (477)
154 2j7a_C Cytochrome C quinol deh 49.8 3.9 0.00016 17.9 0.7 29 15-43 7-35 (159)
155 3myv_A SUSD superfamily protei 46.2 11 0.00046 15.1 4.7 29 161-189 189-217 (454)
156 2wvi_A Mitotic checkpoint seri 44.4 12 0.00049 15.0 7.4 93 102-197 36-131 (164)
157 2hi2_A Fimbrial protein; type 41.8 13 0.00054 14.7 3.6 27 24-50 7-33 (158)
158 3owq_A LIN1025 protein; struct 34.2 6.9 0.00029 16.4 0.0 25 9-33 8-32 (321)
159 3bqo_A Telomeric repeat-bindin 31.6 19 0.00078 13.7 11.9 67 106-172 95-162 (211)
160 1oqw_A Fimbrial protein; type 30.8 19 0.0008 13.6 5.8 27 24-50 7-33 (144)
161 3mkq_A Coatomer beta'-subunit; 25.9 23 0.00098 13.1 10.2 99 64-187 663-761 (814)
162 1wfd_A Hypothetical protein 15 21.5 28 0.0012 12.6 6.7 29 87-115 13-41 (93)
163 2ahm_E Replicase NSP8, replica 21.4 16 0.00068 14.1 0.0 14 106-119 21-34 (203)
164 3h9i_A Cation efflux system pr 20.4 17 0.00073 13.9 0.0 22 24-45 7-28 (407)
No 1
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A
Probab=99.03 E-value=1.5e-07 Score=63.88 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=76.1
Q ss_pred HHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999-99984138766699999997312552069999999999995110057789999998731268957899999
Q gi|254780421|r 52 IVGENFAQ-ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAAT 130 (218)
Q Consensus 52 ~as~~y~~-al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~ 130 (218)
+..++|.. ++.....+++++|+..|++.++-.|+. .-+.+.+|.++...|++++|+..|+.+++..+.+. -+.
T Consensus 35 ~~~day~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~ 108 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS--ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA----RVL 108 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----HHH
T ss_conf 899999999999998599999999999999839998--99999999999986999999999999987299770----788
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHH
Q ss_conf 9999963026998999999753114-642356899999999999889989999999999835-5899899
Q gi|254780421|r 131 LQAASILVDTSSYEEISKILQKLSE-PSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGI 198 (218)
Q Consensus 131 l~la~~~~~~~~~d~a~~~l~~~~~-~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~ 198 (218)
+.++.++...+++++++..+..... ...|....++..+|.++.+.|++++|++.|++++.. ++.|...
T Consensus 109 ~~la~~~~~~~~~~eA~~~~~~al~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 178 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9987889984548999999999998633751146541289998876999999999999998689989999
No 2
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.92 E-value=4.6e-08 Score=66.98 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=58.8
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHH
Q ss_conf 999999951100577899999987312689578999999999963026998999999753114--642356899999999
Q gi|254780421|r 93 MYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE--PSNPMHQFANEILGI 170 (218)
Q Consensus 93 l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~--~~~~~~~~a~ellg~ 170 (218)
|..|..++..|++++|+..|+.++...+. ..+...|.+.++.++...+++++++..+..... +.+++...++..+|.
T Consensus 6 Y~~a~~~~~~~~~~~A~~~~~~~i~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~a~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999978999999999999988859-84689999999999997500999999999999878998068999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9998899899999999998355899899999999999500
Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANII 210 (218)
Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~ 210 (218)
++..+|+.++|+..|+.++..-+.+ ..-..++..|..|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~yP~s-~~a~~a~~~L~~l~ 123 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGS-DAARVAQERLQSIR 123 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHH
T ss_conf 9998499999999999999888199-99999999999871
No 3
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.86 E-value=6.4e-08 Score=66.08 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999998413876669999999731255-206999999999999511005778999999873126895789999999
Q gi|254780421|r 54 GENFAQALELFNSNKLDDARSSFEKILSQDN-KLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQ 132 (218)
Q Consensus 54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~-~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~ 132 (218)
-+.|..++...+.+++++|+..|+.++...| +.+...|.+.+|.++...|++++|+..++.++.+.+.+ .....+.++
T Consensus 3 ~~~Y~~a~~~~~~~~~~~A~~~~~~~i~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~a~~~ 81 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLK 81 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHH
T ss_conf 9999999999997899999999999998885984689999999999997500999999999999878998-068999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHH
Q ss_conf 99963026998999999753114--6423568999999999
Q gi|254780421|r 133 AASILVDTSSYEEISKILQKLSE--PSNPMHQFANEILGIS 171 (218)
Q Consensus 133 la~~~~~~~~~d~a~~~l~~~~~--~~~~~~~~a~ellg~~ 171 (218)
++.++...++++++...+..+.. |++++...+...+..+
T Consensus 82 la~~~~~~~~~~~A~~~~~~~~~~yP~s~~a~~a~~~L~~l 122 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999984999999999999998881999999999999987
No 4
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.85 E-value=1.1e-06 Score=58.35 Aligned_cols=131 Identities=17% Similarity=0.108 Sum_probs=84.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999984138766699999997312552069999999999995-11005778999999873126895789999999999
Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILV-AKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAAS 135 (218)
Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~-~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~ 135 (218)
+.-+......++++.|...+++.++..++.. .+...++..+. ..|+.++|+..++..+..+..+... .+.+.++.
T Consensus 46 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~--~~~~~lg~ 121 (225)
T 2vq2_A 46 LVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY--IANLNKGI 121 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHH--HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
T ss_conf 9999999987899999999999986298621--2356478999998175076656689999722363046--88752688
Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 630269989999997531146423568999999999998899899999999998355
Q gi|254780421|r 136 ILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN 192 (218)
Q Consensus 136 ~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~ 192 (218)
++...+++++|+..+.....-+ |-...+...+|.++...|++++|...|+++....
T Consensus 122 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 8888589999999999999868-9989999999999999499999999999998428
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=1.6e-06 Score=57.47 Aligned_cols=136 Identities=17% Similarity=0.163 Sum_probs=85.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99841387666999999973125520699999999999951100577899999987312689578999999999963026
Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218)
Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218)
......++.++|+..+++.++..++. +.+.+.++.++...|++++|+..++......+... ......+.++...
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 318 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA----DSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHC
T ss_conf 99998799999999999999729998--99999999999984779999998887763286036----8877899999987
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHHH
Q ss_conf 99899999975311464235689999999999988998999999999983-5589989999999
Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRSQ 203 (218)
Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra~ 203 (218)
+++++|+..+.....- .|-...++..+|.++...|++++|++.|++++. +++.|.....+.+
T Consensus 319 ~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp TCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 8999999999999986-98989999999999998499999999999999739998999999999
No 6
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A
Probab=98.82 E-value=1.4e-06 Score=57.76 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=102.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999984138766699999997312552069999999999995110057789999998731268957899999999996
Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASI 136 (218)
Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~ 136 (218)
+.-+......+++++|+..+++.++..|.. ..+.+.++.++...|++++|+..+..++.....|. ...+.+.++.+
T Consensus 75 ~~Lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~eA~~~~~~al~~~~~p~--~~~~~~~lg~~ 150 (252)
T 2ho1_A 75 AALAVVFQTEMEPKLADEEYRKALASDSRN--ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE--RSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHH
T ss_conf 999999998699999999999998729977--07889987889984548999999999998633751--14654128999
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 302699899999975311464235689999999999988998999999999983558998
Q gi|254780421|r 137 LVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPF 196 (218)
Q Consensus 137 ~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~ 196 (218)
+...+++++|+..+.....-+ |-...+...+|.++.+.|++++|+..|+++........
T Consensus 151 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 887699999999999999868-99899999999999986999999999999985587999
No 7
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A*
Probab=98.81 E-value=2.5e-07 Score=62.36 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 38766699999997312552069999999999995110057789999998731268957899999999996302699899
Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218)
Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218)
+++..+|+..|++.++..|+. ..+.+.+|.++...|++++|+..|+.+++-.+.+. -+...++.++...+++++
T Consensus 2 ~~D~~~Al~~l~~al~~~P~~--~~a~~~Lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~Lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD--FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH----HHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHH
T ss_conf 998899999999999968999--99999999999987899999999999998298999----999999999998599999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHH
Q ss_conf 9999753114642356899999999999889989999999999835589-989999999
Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNS-PFGISTRSQ 203 (218)
Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~-p~~~r~ra~ 203 (218)
|+..+.....- .|....++..+|.++...|++++|+..|++++...+. |.....++.
T Consensus 76 A~~~~~~al~l-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~~~~~l~~ 133 (568)
T 2vsy_A 76 AAVLLQQASDA-APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999999971-99999999999999998297123357777652238862377888887
No 8
>2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.77 E-value=1.1e-07 Score=64.51 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999
Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218)
Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218)
..+..+-...+.|++++|+..++++....|.. .-+.+.+|.+++..|++++|...++.+...... .. .+.+..+
T Consensus 8 ~ll~~A~~l~~~g~~~eA~~~~~~~l~~~P~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~---~~~~~~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR--GDVKLAKADCLLETKQFELAQELLATIPLEYQD-NS---YKSLIAK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC-HH---HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HH---HHHHHHH
T ss_conf 99999999998699999999999999878899--999999999999829831337999998761741-02---4358999
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCC-CHHHHHHHHHHHHHHCCC
Q ss_conf 96302699899999975311464235689999999999988998999999999983-5589-989999999999950034
Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNS-PFGISTRSQMILANIIAS 212 (218)
Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~-p~~~r~ra~~~l~~l~~~ 212 (218)
......++.++++..+...... .|....+...+|.++...|++++|.+.|.+++. +++. ....+...-..+..++-.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~l~~~l~~d~~~~~~~~~~~l~~~~~~lg~~ 160 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9998711319999999987611-864089999899998872329999999999998788864799999999999985997
Q ss_pred HHH
Q ss_conf 032
Q gi|254780421|r 213 DQR 215 (218)
Q Consensus 213 ~~~ 215 (218)
+++
T Consensus 161 d~a 163 (176)
T 2r5s_A 161 NAI 163 (176)
T ss_dssp CHH
T ss_pred CHH
T ss_conf 599
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, unfolded protein response; 2.51A {Mus musculus}
Probab=98.77 E-value=4e-06 Score=54.97 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=90.6
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCC---HHH-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 841387666999999973125520---699-------9999999999511005778999999873126895789999999
Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKL---YNP-------LSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQ 132 (218)
Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~---ya~-------lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~ 132 (218)
....++.+.|+..+++.....++. +.. ...+..+..++..|++.+|+..+..++...+........+...
T Consensus 198 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 99854499999999999972989899999888899887667654457653158888887889998398631011100001
Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9996302699899999975311464235689999999999988998999999999983558998999999
Q gi|254780421|r 133 AASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRS 202 (218)
Q Consensus 133 la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra 202 (218)
++.++...+++++|+..+.....- .|-...++..+|.++...|++++|++.|++++...+....++...
T Consensus 278 l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 110000222599999999999984-999899999999999985999999999999987398989999999
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, unfolded protein response; 2.51A {Mus musculus}
Probab=98.70 E-value=7.7e-06 Score=53.21 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=98.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH-HHH-------HH
Q ss_conf 9999984138766699999997312552069999999999995110057789999998731268957-899-------99
Q gi|254780421|r 58 AQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLA-VRY-------AA 129 (218)
Q Consensus 58 ~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~-~~~-------lA 129 (218)
..+......++++.|+..++......+.. ..+.+.++.++...++.++|+..+..++...+.... +.. ..
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999987488402467889999973124--7888999999998544999999999999729898999998888998876
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHH
Q ss_conf 99999963026998999999753114---642356899999999999889989999999999835-58998999999999
Q gi|254780421|r 130 TLQAASILVDTSSYEEISKILQKLSE---PSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQMI 205 (218)
Q Consensus 130 ~l~la~~~~~~~~~d~a~~~l~~~~~---~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~~~ 205 (218)
....+..+...+++++++..+..... ...++.......+|.++.+.|++++|.+.|++++.. ++.+..+..++...
T Consensus 237 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 67654457653158888887889998398631011100001110000222599999999999984999899999999999
No 11
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.70 E-value=3.2e-06 Score=55.57 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=66.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999841387666999999973125520699999999999951100577899999987312689578999999999963
Q gi|254780421|r 58 AQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASIL 137 (218)
Q Consensus 58 ~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~ 137 (218)
.-+......+++++|+..+++.+...|+. ..+.+.++.++...|++++|+..|+..++-.+... .+...++.++
T Consensus 13 ~La~~y~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~ 86 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSDPKN--ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA----EINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
T ss_conf 99999998699999999999999868998--99999999999987899999999999986298621----2356478999
Q ss_pred H-CCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 0-2699899999975311-464235689999999999988998999999999983
Q gi|254780421|r 138 V-DTSSYEEISKILQKLS-EPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 138 ~-~~~~~d~a~~~l~~~~-~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
. ..+++++++..+.... .+..|....+...+|.++...|++++|++.|++++.
T Consensus 87 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 141 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9981750766566899997223630468875268888885899999999999998
No 12
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.70 E-value=5.7e-06 Score=54.03 Aligned_cols=118 Identities=9% Similarity=0.018 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 38766699999997312552069999999999995110057789999998731268957899999999996302699899
Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218)
Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218)
.+++++|+..+++.+...|+. ..+.+.+|.++...|++++|+..++..+...+.++ -+...++.++...+++++
T Consensus 151 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~e 224 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPND--AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA----QLWNKLGATLANGNRPQE 224 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCC--HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHH
T ss_conf 778999999999999749862--03444012210255449999999999886187879----999999999998478999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999975311464235689999999999988998999999999983
Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
|+..+.....- .|....++..+|.++.+.|++++|++.|++++.
T Consensus 225 A~~~~~~al~l-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ai~ 268 (327)
T 3cv0_A 225 ALDAYNRALDI-NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999985-989899999999999984999999999999986
No 13
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.68 E-value=1.5e-06 Score=57.51 Aligned_cols=131 Identities=19% Similarity=0.207 Sum_probs=107.8
Q ss_pred HHHHH-HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999-99984138766699999997312552069999999999995110057789999998731268957899999999
Q gi|254780421|r 55 ENFAQ-ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQA 133 (218)
Q Consensus 55 ~~y~~-al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~l 133 (218)
+.|.. +......+++++|+..+++.+...+.... +.+.++.++...++.+.|...++.++...+.+. .+.+.+
T Consensus 2 ~ay~~lg~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~----~~~~~~ 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE--AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH----HHHHHH
T ss_conf 88999999999968999999999999873954299--999999999980761554689999998598772----899988
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99630269989999997531146423568999999999998899899999999998355
Q gi|254780421|r 134 ASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN 192 (218)
Q Consensus 134 a~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~ 192 (218)
|.+++..+++++|+..+.....- .|........+|.++...|++++|+..|+++++-.
T Consensus 76 a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 133 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 18999848899999999999871-98619999999999999689999999999999878
No 14
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=1.2e-06 Score=58.14 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999
Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218)
Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218)
+.-..|..++...+.++++.|+..|.++.+. . .-+.+.++.++...|++++|+..|+..++-.+.. ..+.+
T Consensus 5 e~~~l~~~g~~~~~~~d~~~Al~~f~~i~~~---~--~~~~~nlG~~y~~~~~~~~A~~~f~~Ai~l~p~~----~~a~~ 75 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP---H--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC---C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC---C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH----HHHHH
T ss_conf 9999999999999858999999998656898---8--9999999999998699999999999999866045----78887
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCC--CCC-------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999963026998999999753114--642-------------3568999999999998899899999999998355899
Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLSE--PSN-------------PMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218)
Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~~--~~~-------------~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218)
.++.++...+++++|++.+..... +.. ++...++..+|.++...|++++|.+.|++++.-...|
T Consensus 76 ~~g~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~Al~~~~~~ 154 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 7999999854589999999999985836725789986432365379999999999999699999999999998379982
No 15
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, cytoplasm, plasmid, virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A
Probab=98.67 E-value=7.2e-07 Score=59.57 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999999511005778999999873126895789999999999630269989999997531146423568999999
Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEIL 168 (218)
Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ell 168 (218)
.-+.+.+|..++..|++++|+..|+.++...+... -+.+.++.++...+++++|+..+.....- .|....+...+
T Consensus 36 ~~~l~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~ 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV----DYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
T ss_conf 99999999999986999999999999998789999----99999999999859868999999999985-55786999877
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 999998899899999999998355899899999999999500
Q gi|254780421|r 169 GISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANII 210 (218)
Q Consensus 169 g~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~ 210 (218)
|.++...|++++|++.|++++.. .+.+.++.|++..|+.|.
T Consensus 111 g~~~~~~g~~~~A~~~~~~ai~~-~~~~~~~~~a~~~L~~l~ 151 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH-SNDEKLKIKAQSYLDAIQ 151 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHC
T ss_conf 79999878999999999999863-998499999999998619
No 16
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=6.2e-06 Score=53.79 Aligned_cols=136 Identities=14% Similarity=0.080 Sum_probs=96.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99984138766699999997312552069999999999995110057789999998731268957899999999996302
Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD 139 (218)
Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~ 139 (218)
+......+++++|+..+++.....+.. ....+.++.++...|++++|+..|..+++..+... -+.+.++.++..
T Consensus 210 ~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~ 283 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP----DAYCNLANALKE 283 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH----HHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHH
T ss_conf 999885687999999999998849752--79999999999987999999999999997299989----999999999998
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHH
Q ss_conf 69989999997531146423568999999999998899899999999998355-8998999999
Q gi|254780421|r 140 TSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN-NSPFGISTRS 202 (218)
Q Consensus 140 ~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~-~~p~~~r~ra 202 (218)
.+++++|+..+...... .|........+|.++...|++++|.+.|++++... +.+.....++
T Consensus 284 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 346 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp HSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 47799999988877632-8603688778999999878999999999999986989899999999
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 2c0m_A 2c0l_A
Probab=98.66 E-value=8.5e-06 Score=52.93 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 76669999999731255206999999999999511005778999999873126895789999999999630269989999
Q gi|254780421|r 68 KLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEIS 147 (218)
Q Consensus 68 ~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~ 147 (218)
...++...+.+.+...++...+.+.+.++.++...|++++|+..|..++...+.+. .+...+|.++...+++++|+
T Consensus 196 ~~~ea~~~~~~a~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~ 271 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY----LLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHH
T ss_conf 39999999999998485420147777799999882447779998999998699979----99999999999878999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99753114642356899999999999889989999999999835
Q gi|254780421|r 148 KILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD 191 (218)
Q Consensus 148 ~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218)
..+.....- .|....++..+|.++.+.|++++|.+.|++++.-
T Consensus 272 ~~~~~al~l-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 314 (368)
T 1fch_A 272 AAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999974-9998999999999999869999999999999871
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.66 E-value=1.8e-06 Score=57.13 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=77.8
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHH
Q ss_conf 4138766699999997312552069999999999995110057789999998731268-----95789999999999630
Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLA-----PLAVRYAATLQAASILV 138 (218)
Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~-----~~~~~~lA~l~la~~~~ 138 (218)
...++.+.|...+++.....++. ..+...++.++...|++++|+..+...++.... +......+...++.++.
T Consensus 170 ~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 247 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98177166799999998618751--0222346777774013999999999999970752101111236777653213577
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 2699899999975311464235689999999999988998999999999983558998999999999995003403
Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIASDQ 214 (218)
Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~~~~ 214 (218)
..+++++|+..+.....- .|..+.++..+|.++...|++++|++.|++++.-.+.++.........+...++..+
T Consensus 248 ~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~l~~~~~~~e 322 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 634499999999999986-989899999999999985999999999999986599999999999999984798388
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.65 E-value=8.8e-07 Score=59.03 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=87.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998413876669999999731255206999999999999511005778999999873126895789999999999630
Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILV 138 (218)
Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~ 138 (218)
-+......+++++|+..+++.++..|+. +.+.+.+|.++...|++++|+..|+..+.-.+.+. .+.+.++.++.
T Consensus 276 l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~l~~~~~ 349 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDSNN--SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI----FPYIQLACLAY 349 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCTTC--THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCH----HHHHHHCCCCC
T ss_conf 5334676566888888899898709854--04676521100011128999999999998498856----67663031100
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 2699899999975311464235689999999999988998999999999983
Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
..+++++|+..+...... .|..+.+...+|.++..+|++++|++.|++++.
T Consensus 350 ~~~~~~~A~~~~~~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 400 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp TTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 001479999999999986-998468887577887875059999999999987
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric regulation, phosphoprotein, TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A
Probab=98.65 E-value=1.5e-06 Score=57.67 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=54.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 41387666999999973125520699999999999951100577899999987312689578999999999963026998
Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSY 143 (218)
Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~ 143 (218)
.+.++.++|+..+++.+...+.. ..+.+.+|.++...|++++|+..|+.++...+... .+.+.++.++...+++
T Consensus 287 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKF 360 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHHHHHHHHHTTCH
T ss_pred HHHCCHHHHHHHHHHHHHHCCCC--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHH
T ss_conf 31000023369999998849740--14554012105655222355788999999764010----3334555567752359
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999997531146423568999999999998899899999999998
Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELA 189 (218)
Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218)
++++..+....... |..+.++..+|.++...|++++|.+.|++++
T Consensus 361 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 405 (537)
T 3fp2_A 361 TESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999868-9999999999999997799999999999998
No 21
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=6.5e-07 Score=59.85 Aligned_cols=138 Identities=13% Similarity=0.019 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 66699999997312552069999999999995110057789999998731268957899999999996302699899999
Q gi|254780421|r 69 LDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISK 148 (218)
Q Consensus 69 ~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~ 148 (218)
...+...|..+.+-.+.. .-+.+.+|..++..|++++|+..|+.++...+.++ -+.+.++.++...+++++|+.
T Consensus 3 ~~~~~~~~~~~~~i~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~lg~~~~~~~~~~~Ai~ 76 (148)
T 2vgx_A 3 LGSGGGTIAMLNEISSDT--LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp ---CCCSHHHHTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHH
T ss_conf 778999999998689564--99999999999986999999999999998595999----999999999998698578999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCC--HHHHHHHHHHHHHHCCCH
Q ss_conf 9753114642356899999999999889989999999999835-5899--899999999999500340
Q gi|254780421|r 149 ILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSP--FGISTRSQMILANIIASD 213 (218)
Q Consensus 149 ~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p--~~~r~ra~~~l~~l~~~~ 213 (218)
.+.....-+ |....++..+|.++...|++++|.+.|++++.. ++.| ..++.|+...+..+.-.-
T Consensus 77 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~i~~~k 143 (148)
T 2vgx_A 77 SYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKK 143 (148)
T ss_dssp HHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC----
T ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999756248-6539999999999985578999999999998618997789999999999999981377
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 2c0m_A 2c0l_A
Probab=98.60 E-value=8.1e-07 Score=59.25 Aligned_cols=73 Identities=7% Similarity=0.021 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf 99999996302699899999975311464235689999999999988998999999999983-558998999999
Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRS 202 (218)
Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra 202 (218)
+...++.++...+++++|+..+...... .|-.+.++..+|.++...|++++|++.|++++. +++.+.....++
T Consensus 219 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg 292 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 7777999998824477799989999986-9997999999999999878999999999999974999899999999
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus HB27}
Probab=98.60 E-value=1.1e-05 Score=52.17 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=86.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHH------HHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 9999999841387666999999973125520---699999999------9999511005778999999873126895789
Q gi|254780421|r 56 NFAQALELFNSNKLDDARSSFEKILSQDNKL---YNPLSNMYI------ASILVAKGDTKNAAEIFLKVANDDLAPLAVR 126 (218)
Q Consensus 56 ~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~---ya~lA~l~l------A~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~ 126 (218)
.+.-+......+++++|+..+++.++..|.. +..++.... .......|++++|+..++..++-.+...
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--- 118 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA--- 118 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH---
T ss_conf 99999999986999999999998760385047887502222100123478899871539999999988874499869---
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999999963026998999999753114642356899999999999889989999999999835589989999
Q gi|254780421|r 127 YAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218)
Q Consensus 127 ~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218)
-+.+.++.++...+++++++..+.......+ .......+|.++...|++++|++.|++++...+.......
T Consensus 119 -~~~~~lg~~~~~~~~~~~a~~~~~~al~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 189 (217)
T 2pl2_A 119 -PLHLQRGLVYALLGERDKAEASLKQALALED--TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV 189 (217)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf -9999999999996899999999999981799--8469999858888647999999999999985999899999
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.60 E-value=1.3e-06 Score=57.95 Aligned_cols=137 Identities=10% Similarity=0.043 Sum_probs=82.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCC---H----------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99841387666999999973125520---6----------9999999999995110057789999998731268957899
Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKL---Y----------NPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRY 127 (218)
Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~---y----------a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~ 127 (218)
......++.++|+..+++.....+.. . ........+..+...|++++|+..++.++...+.+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---- 172 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA---- 172 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH----
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----
T ss_conf 9998717415699987644402730788876542456666569999999999987789999999999997498620----
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHH
Q ss_conf 9999999963026998999999753114642356899999999999889989999999999835-58998999999
Q gi|254780421|r 128 AATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRS 202 (218)
Q Consensus 128 lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra 202 (218)
.+.+.++.++...+++++|+..+.....- .|..+.++..+|.++...|++++|++.|++++.. ++.+.....++
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~lg 247 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 34440122102554499999999998861-8787999999999999847899999999999985989899999999
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.59 E-value=1e-05 Score=52.39 Aligned_cols=122 Identities=18% Similarity=0.158 Sum_probs=53.0
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 84138766699999997312552069999999999995110057789999998731268957899999999996302699
Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSS 142 (218)
Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~ 142 (218)
....++.+.|...+++.....+........+.........+++++|+..+..++...+.+. .+...++.+++..++
T Consensus 140 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL----LLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHCCC
T ss_conf 9986998889999999998642577999998357775054239999998888887501469----999889999998198
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 89999997531146423568999999999998899899999999998
Q gi|254780421|r 143 YEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELA 189 (218)
Q Consensus 143 ~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218)
+++|+..+...... .|..+.++..+|.++...|+..+|.+.|.+.+
T Consensus 216 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ea~~~~~~~l 261 (291)
T 3mkr_A 216 WEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 89999999999986-89999999999999998699199999999999
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric regulation, phosphoprotein, TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A
Probab=98.58 E-value=1.3e-05 Score=51.70 Aligned_cols=125 Identities=21% Similarity=0.233 Sum_probs=61.9
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 41387666999999973125520699999999999951100577899999987312689578999999999963026998
Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSY 143 (218)
Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~ 143 (218)
...+++++|+..+++.+...|+. ..+.+.+|.++...|++++|+..++.++...+..+ -+...++.++...+++
T Consensus 321 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~ 394 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPEN--VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP----EVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCH
T ss_conf 65522235578899999976401--03334555567752359999999999998689999----9999999999977999
Q ss_pred HH--------------------------------------------------HHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99--------------------------------------------------9999753114642356899999999999
Q gi|254780421|r 144 EE--------------------------------------------------ISKILQKLSEPSNPMHQFANEILGISAL 173 (218)
Q Consensus 144 d~--------------------------------------------------a~~~l~~~~~~~~~~~~~a~ellg~~~~ 173 (218)
++ |+..+.....- .|....++..+|.++.
T Consensus 395 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~kal~l-~p~~~~a~~~lg~~~~ 473 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
T ss_conf 999999999986399999999999999986578899876557988765899999999999985-9998999999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8899899999999998355899
Q gi|254780421|r 174 KFGKVQKAKTIFEELAKDNNSP 195 (218)
Q Consensus 174 ~~Gd~~~A~~~y~~i~~~~~~p 195 (218)
++|++++|++.|++++.-.+..
T Consensus 474 ~~g~~~~A~~~~~~al~l~~~~ 495 (537)
T 3fp2_A 474 QMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--C
T ss_pred HCCCHHHHHHHHHHHHHCCCCC
T ss_conf 8599999999999997319997
No 27
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics consortium, SGC, coiled coil, microtubule, motor protein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.58 E-value=1.2e-05 Score=51.97 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-------CCCC
Q ss_conf 9999999999951100577899999987312----6895789999999999630269989999997531-------1464
Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDD----LAPLAVRYAATLQAASILVDTSSYEEISKILQKL-------SEPS 157 (218)
Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~----~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~-------~~~~ 157 (218)
..+...++.++...|++++|+..++.+++-. ..+.+....+...++.++...+++++|+..+... ..++
T Consensus 85 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999986887889987888999999861668868999999871765503755889998888999999862899
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 235689999999999988998999999999983
Q gi|254780421|r 158 NPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 158 ~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
.|....+...+|.++.+.|++++|.+.|++++.
T Consensus 165 ~~~~a~~~~~Lg~~~~~~g~~~~A~~~~~~al~ 197 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 989999999999999876879999999999999
No 28
>2e2e_A Formate-dependent nitrite reductase complex NRFG subunit; TPR, cytochrome C biogenesis, O157:H7 EDL933, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=1.6e-06 Score=57.49 Aligned_cols=125 Identities=8% Similarity=0.043 Sum_probs=90.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--H-CC
Q ss_conf 41387666999999973125520699999999999951100577899999987312689578999999999963--0-26
Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASIL--V-DT 140 (218)
Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~--~-~~ 140 (218)
.+.++.+.++..++..+...|+.. -+.+.+|.+++..|++++|+..|+.++...+.++.. .+..+.++ . ..
T Consensus 21 ~~~~~~~~ai~~l~~~l~~~P~~~--~~~~~Lg~~y~~~g~~~~A~~~~~~al~l~p~~~~~----~~~~a~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL----YAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH----HHHHHHHHHHHTTT
T ss_pred HCCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHCCC
T ss_conf 857999999999999999889999--999999999999699999999999999858632799----98789999986387
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9989999997531146423568999999999998899899999999998355899
Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218)
Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218)
...+++...+...... .|....++..+|.++...|++++|...|++++...+..
T Consensus 95 ~~~~ea~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 148 (177)
T 2e2e_A 95 HMTAQTRAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred CCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 6312468999899871-99989999999999999789999999999998659996
No 29
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.54 E-value=6.2e-06 Score=53.77 Aligned_cols=136 Identities=13% Similarity=0.012 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH--HHHHH-
Q ss_conf 999999999841387666999999973125520699999999999951100577899999987312689578--99999-
Q gi|254780421|r 54 GENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAV--RYAAT- 130 (218)
Q Consensus 54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~--~~lA~- 130 (218)
...+..+......|++++|+..+...++..+......+...++.++...|++++|...|+..+.-.+..... ..+..
T Consensus 101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 180 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999999999848738899999999863876322999999999999859999999999999861903422014999999
Q ss_pred -HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf -9999963026998999999753114642356899999999999889989999999999835
Q gi|254780421|r 131 -LQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD 191 (218)
Q Consensus 131 -l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218)
...+.+....+++++|+..+..+....+. ..++..+|.++..+|++++|.+.|++++..
T Consensus 181 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 240 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPT--WKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999998700499999999998864997--999999999999869989999999999862
No 30
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.53 E-value=1.9e-06 Score=56.92 Aligned_cols=119 Identities=13% Similarity=0.004 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999951100577899999987312689578999999999963026998999999753114642356899999
Q gi|254780421|r 88 NPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEI 167 (218)
Q Consensus 88 a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~el 167 (218)
..-+.+.+|..++..|++++|+..|..++...+.+. .+.+.++.++...+++++|+..+.....- .|....+...
T Consensus 17 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~ 91 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHH
T ss_conf 599999999999986999999999999998399879----99999739999948989999999999874-4388999997
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC-C--CCHHHHHHHHHHHHHHCC
Q ss_conf 9999998899899999999998355-8--998999999999995003
Q gi|254780421|r 168 LGISALKFGKVQKAKTIFEELAKDN-N--SPFGISTRSQMILANIIA 211 (218)
Q Consensus 168 lg~~~~~~Gd~~~A~~~y~~i~~~~-~--~p~~~r~ra~~~l~~l~~ 211 (218)
+|.++...|++++|.+.|++++... + .-..++.+++..+..|..
T Consensus 92 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 67999885899999999999987399997899999999999998875
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.51 E-value=5.5e-06 Score=54.09 Aligned_cols=131 Identities=21% Similarity=0.173 Sum_probs=67.2
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-CHHHHHHH----HHHHHHHHH
Q ss_conf 4138766699999997312552069999999999995110057789999998731268-95789999----999999630
Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLA-PLAVRYAA----TLQAASILV 138 (218)
Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~-~~~~~~lA----~l~la~~~~ 138 (218)
...+++++|+..+++.....|+. +.+...+|.++...|++++|+..|+..++-.+. +..+..++ +..+.....
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~ 426 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00014799999999999869984--6888757788787505999999999998729888899998999999877677888
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 26998999999753114642356899999999999889989999999999835589989
Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFG 197 (218)
Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~ 197 (218)
..+++++|+..+.....- .|-...++..+|.++...|++++|++.|+++++-..+++.
T Consensus 427 ~~~~~~~A~~~~~kal~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~l~~~~~e 484 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp CTTHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 665899999999999973-9998999999999999859999999999999865899399
No 32
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.48 E-value=1.4e-05 Score=51.56 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=79.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99841387666999999973125520699999999999951100577899999987312689578999999999963026
Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218)
Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218)
......+++++|+..+++.....+... .+.+.++..+...|+.++|...|+.++...+.++ .+...++.++...
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~ 206 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKGCH--LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP----FVMHEVGVVAFQN 206 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHH
T ss_conf 999987999999999999998511378--9999988999981771667999999986187510----2223467777740
Q ss_pred CCHHHHHHHHHHHCC-------C-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHH
Q ss_conf 998999999753114-------6-4235689999999999988998999999999983-55899899999999
Q gi|254780421|r 141 SSYEEISKILQKLSE-------P-SNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRSQM 204 (218)
Q Consensus 141 ~~~d~a~~~l~~~~~-------~-~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra~~ 204 (218)
++++++...+..... . ..+.....+..+|.++...|++++|++.|++++. .++.+......+..
T Consensus 207 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 279 (330)
T 3hym_B 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279 (330)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 1399999999999997075210111123677765321357763449999999999998698989999999999
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.47 E-value=6.3e-06 Score=53.73 Aligned_cols=133 Identities=15% Similarity=0.109 Sum_probs=86.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99841387666999999973125520699999999999951100577899999987312689578999999999963026
Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218)
Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218)
......+++++++..++......+.. ....+..+.++...++.+.|+..+...+.....+. .+...++.++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMEN--GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT----EARFQFGMCLANE 172 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHC
T ss_conf 99998356055688888877640006--99998778888888758999999999987087427----7665310135402
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHH
Q ss_conf 998999999753114642356899999999999889989999999999835-589989999
Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGIST 200 (218)
Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ 200 (218)
+++++++..+...... .|....+...+|.++...|++++|++.|++++.- ++-+..+..
T Consensus 173 ~~~~~A~~~~~~ai~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~A~~~ 232 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp TCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 6379999999999987-88989999999999999599999999999999829898999998
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.47 E-value=4.5e-05 Score=48.49 Aligned_cols=138 Identities=18% Similarity=0.139 Sum_probs=81.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998413876669999999731255206999999999999511005778999999873126895789999999999630
Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILV 138 (218)
Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~ 138 (218)
-+......+++++|+..+++.++..|+. ..+.+.++.++...|++++|+..+...+...+.+. ......+.++.
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~ 136 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSA--ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG----DLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH----HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_conf 9999998789999999999998609862--99999878999983560556888888776400069----99987788888
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHH
Q ss_conf 26998999999753114642356899999999999889989999999999835-589989999999
Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQ 203 (218)
Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~ 203 (218)
..++++.++..+...... .+....+...+|.++...|++++|...|++++.. ++.+.....++.
T Consensus 137 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~lg~ 201 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV 201 (243)
T ss_dssp HTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 887589999999999870-87427766531013540263799999999999878898999999999
No 35
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.46 E-value=5.1e-06 Score=54.32 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=77.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 98413876669999999731255206999999999999511005778999999873126895789999999999630269
Q gi|254780421|r 62 ELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTS 141 (218)
Q Consensus 62 ~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~ 141 (218)
.....+...+|+..++++....++. +.+.+.+|.++...|++++|+..++..+...+.+... -+...++.+++..+
T Consensus 75 ~l~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~g 150 (310)
T 3mv2_B 75 DLYVQFLDTKNIEELENLLKDKQNS--PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT--ELLLLAIEVALLNN 150 (310)
T ss_dssp HHHHHHHTTTCCHHHHHTTTTSCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHCC
T ss_conf 9999872588999999987509999--9999999999998487388999999998638763229--99999999999859
Q ss_pred CHHHHHHHHHHHCCCCC--H-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 98999999753114642--3-----5689999999999988998999999999983558998999999
Q gi|254780421|r 142 SYEEISKILQKLSEPSN--P-----MHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRS 202 (218)
Q Consensus 142 ~~d~a~~~l~~~~~~~~--~-----~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra 202 (218)
++++|.+.+.....-.+ + .........+.++...|++++|...|+++....+.+..+..++
T Consensus 151 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~l~~~~~~~~~~~~la 218 (310)
T 3mv2_B 151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL 218 (310)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999986190342201499999999999999870049999999999886499799999999
No 36
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.46 E-value=2.9e-05 Score=49.61 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=77.9
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCC--CCHHH
Q ss_conf 9999999998-4138766699999997312----5520699999999999951-1005778999999873126--89578
Q gi|254780421|r 54 GENFAQALEL-FNSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVA-KGDTKNAAEIFLKVANDDL--APLAV 125 (218)
Q Consensus 54 s~~y~~al~~-~~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~-~g~~~~A~~~l~~i~~~~~--~~~~~ 125 (218)
+..|..+-.. ...+++++|+..+.+..+. +...-+..+...++.++.. .|++++|+..|+..++-.. ..+..
T Consensus 77 a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~g~~~~a~~~~~~la~~~~~~~~~~~~A~~~y~kA~~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999876987999999999999877537416899999999899998721099999999999987553688898
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CC---HHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999999999630269989999997531146--42---356-899999999999889989999999999835
Q gi|254780421|r 126 RYAATLQAASILVDTSSYEEISKILQKLSEP--SN---PMH-QFANEILGISALKFGKVQKAKTIFEELAKD 191 (218)
Q Consensus 126 ~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~--~~---~~~-~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218)
..-+...++.++...+++++|+..+...... .. .+. .......|.+++..||...|++.|++....
T Consensus 157 ~~~~~~~la~~~~~~~~y~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~A~~~~~~~~~~ 228 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999999984369999999999998734134656889999999999999808999999999999975
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.43 E-value=3.7e-05 Score=49.01 Aligned_cols=131 Identities=19% Similarity=0.162 Sum_probs=76.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998413876669999999731255206999999999999511005778999999873126895789999999999630
Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILV 138 (218)
Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~ 138 (218)
-+......+++++|+..+++.++..|+. .-+.+.++.++...|++++|+..+..++...+.+.... + .+.++....
T Consensus 83 lg~~~~~~g~~~~Ai~~~~~al~~~p~~--~~a~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~-~~~~~~~~~ 158 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPTY--NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS-L-WLYLAEQKL 158 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-H-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH-H-HHHHHHHHC
T ss_conf 9999988589999999976500138317--89999862321023669999999999987297679999-9-999999984
Q ss_pred ------------------------------CCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf ------------------------------269989999997531146---42356899999999999889989999999
Q gi|254780421|r 139 ------------------------------DTSSYEEISKILQKLSEP---SNPMHQFANEILGISALKFGKVQKAKTIF 185 (218)
Q Consensus 139 ------------------------------~~~~~d~a~~~l~~~~~~---~~~~~~~a~ellg~~~~~~Gd~~~A~~~y 185 (218)
.................. ..|-...+...+|.++...|++++|.+.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp CHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 90999999999997377336234689999866532001378999988887738120999999999999878999999999
Q ss_pred HHHHHCCC
Q ss_conf 99983558
Q gi|254780421|r 186 EELAKDNN 193 (218)
Q Consensus 186 ~~i~~~~~ 193 (218)
++++...+
T Consensus 239 ~~Al~~~p 246 (275)
T 1xnf_A 239 KLAVANNV 246 (275)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
T ss_conf 99988498
No 38
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.37 E-value=1.7e-05 Score=51.02 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=80.1
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999951100577899999987312------------689578999999999963026998999999753114642356
Q gi|254780421|r 94 YIASILVAKGDTKNAAEIFLKVANDD------------LAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMH 161 (218)
Q Consensus 94 ~lA~~~~~~g~~~~A~~~l~~i~~~~------------~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~ 161 (218)
.++..++..|++++|+..|+..+.-. ..-......+.+.++..++..+++++|+..+.....-+ |-.
T Consensus 228 ~~Gn~~fk~g~y~~Ai~~Y~kAL~~l~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~kl~~y~~Ai~~~~kaL~ld-p~~ 306 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSN 306 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCHHCCHHHCCHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
T ss_conf 9999999859999999999999951300210000055554191169999999999998488899999999999849-998
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 8999999999998899899999999998355899899999999999500340
Q gi|254780421|r 162 QFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIASD 213 (218)
Q Consensus 162 ~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~~~ 213 (218)
..++..+|.++...|++++|.+.|++++.-.+....++.........+....
T Consensus 307 ~ka~~~~g~a~~~lg~~e~A~~~~~kal~l~P~n~~~~~~l~~~~~~l~~~~ 358 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998699999999999999849998999999999999999999
No 39
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.5e-05 Score=51.49 Aligned_cols=115 Identities=15% Similarity=0.009 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218)
.....+..++.+|++++|+..|.+++.-.+ .........+.++.+++..+++++++..+.....-+ |-...++..+|.
T Consensus 30 ~l~~~Gn~~f~~~~y~~Ai~~y~kAl~l~~-~~~~~~~~~~n~~~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~lg~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 999999999996899999999999987454-877799999999999998568889999899999878-998999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99988998999999999983558998999999999995003
Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIA 211 (218)
Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~ 211 (218)
++...|++++|+..|++++...+....+ +..|..|.+
T Consensus 108 ~~~~~~~~~~A~~~~~kal~l~P~n~~~----~~~L~~l~~ 144 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVF----QEALRNISG 144 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHH----HHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHC
T ss_conf 9998789999999999999858898999----999987628
No 40
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.34 E-value=2.8e-05 Score=49.71 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999951100577899999987312689578999999999963026998999999753114642356899999
Q gi|254780421|r 88 NPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEI 167 (218)
Q Consensus 88 a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~el 167 (218)
.+-+-+.+|.+++..|++++|+..|+.++...+... .+....+.++...+++++|+..+...... .|....+...
T Consensus 8 ~~eay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~ 82 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHH
T ss_conf 399999999999996899999999999987595669----99999999999828822679999999986-8998699997
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHH
Q ss_conf 999999889989999999999835-589989999999
Q gi|254780421|r 168 LGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQ 203 (218)
Q Consensus 168 lg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~ 203 (218)
+|.++.+.|++++|.+.|++++.- ++.|.....++.
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~la~ 119 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 6747660275999999999999878897999999999
No 41
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.32 E-value=3.4e-05 Score=49.23 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=75.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHCCC-CCHHHHHHHHHHHH
Q ss_conf 9999951100577899999987312689578999999999963026998---9999997531146-42356899999999
Q gi|254780421|r 95 IASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSY---EEISKILQKLSEP-SNPMHQFANEILGI 170 (218)
Q Consensus 95 lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~---d~a~~~l~~~~~~-~~~~~~~a~ellg~ 170 (218)
++..++..+++++|...|+..+...+.++ -+.+.++..++..++. .+|+..+...... ..|....++..+|.
T Consensus 7 l~~~~~~~~dl~kAe~~y~~al~~~p~~~----~~~~n~a~~L~~~~~~~d~~~Ai~~l~~~l~~~~~p~~~~~~~~La~ 82 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99875288999999999999974199999----99999999999859877899999999998750479977999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999889989999999999835589989
Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFG 197 (218)
Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~ 197 (218)
+|.+.|++++|++.|++++...+....
T Consensus 83 ~y~~~g~~~~A~~~~~~~L~~~P~~~~ 109 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 999839959999999999987919699
No 42
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transcription activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.31 E-value=0.00016 Score=45.05 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999963026998999999753114-----6423568999999999998899899999999998
Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSE-----PSNPMHQFANEILGISALKFGKVQKAKTIFEELA 189 (218)
Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~-----~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218)
+...++.+++..++++++...+..... ...+....++..+|.++...|+.++|+..|++++
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999983462889999999999998758966899999999999998799999999999999
No 43
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.31 E-value=7.8e-05 Score=46.98 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=89.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99984138766699999997312552069999999999995110057789999998731268957899999999996302
Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD 139 (218)
Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~ 139 (218)
+......+++++|+..+.+. .+ .......+.++...|+.+.|...++.+++-.+.+. .....+..+.+...
T Consensus 108 a~~~~~~~~~~~Al~~~~~~----~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~~~ 178 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQG----DS---LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT--LTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTTC----CS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHCC----CC---CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCC
T ss_conf 99999879999999987453----66---55589999999986998889999999998642577--99999835777505
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf 6998999999753114642356899999999999889989999999999835-58998999999999995003
Q gi|254780421|r 140 TSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQMILANIIA 211 (218)
Q Consensus 140 ~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~~~l~~l~~ 211 (218)
.+++++|+..+....... |.....+..+|.++...|++++|++.|++++.. ++.|..+...+ .....++.
T Consensus 179 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~g~ 249 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV-VLSQHLGK 249 (291)
T ss_dssp TTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHCCC
T ss_conf 423999999888888750-146999988999999819889999999999986899999999999-99998699
No 44
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=3.8e-05 Score=48.93 Aligned_cols=107 Identities=9% Similarity=-0.010 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999995110057789999998731268957899999999996302699899999975311464235689999999
Q gi|254780421|r 90 LSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILG 169 (218)
Q Consensus 90 lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg 169 (218)
-+....|..++..|++++|+..|+.++.-.+.+. .+.+.++.++...+++++|+..+.....-. |-...++..+|
T Consensus 13 e~l~~~G~~~~~~~~y~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~lg 87 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----VYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 9999999999995899999999999998689989----999848899887277688999999999886-32379998899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99998899899999999998355899899999
Q gi|254780421|r 170 ISALKFGKVQKAKTIFEELAKDNNSPFGISTR 201 (218)
Q Consensus 170 ~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~r 201 (218)
.++...|++++|++.|++++...+....++..
T Consensus 88 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 119 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSN 119 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99850256999999999999769698999999
No 45
>2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.29 E-value=1.6e-05 Score=51.20 Aligned_cols=130 Identities=8% Similarity=0.008 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999
Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218)
Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218)
..+.-+....+.+++++|...++.+....++. ..+.+..+..+...++...++..+...+...+.+. -+.+.++
T Consensus 42 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~la 115 (176)
T 2r5s_A 42 VKLAKADCLLETKQFELAQELLATIPLEYQDN--SYKSLIAKLELHQQAAESPELKRLEQELAANPDNF----ELACELA 115 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCH----HHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHH----HHHHHHH
T ss_conf 99999999998298313379999987617410--24358999999871131999999998761186408----9999899
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 963026998999999753114642-35689999999999988998999999999983
Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSN-PMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~-~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
.++...+++++++..+..+...+. .....+...+|.++...|+.++|...|++.+.
T Consensus 116 ~~~~~~~~~~~A~~~l~~~l~~d~~~~~~~~~~~l~~~~~~lg~~d~a~~~yr~~l~ 172 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 998872329999999999998788864799999999999985997599999999998
No 46
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=4e-05 Score=48.77 Aligned_cols=98 Identities=8% Similarity=-0.003 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999999984138766699999997312552069999999999995110057789999998731268957899999
Q gi|254780421|r 51 NIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAAT 130 (218)
Q Consensus 51 ~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~ 130 (218)
..+......+...+..+++++|+..|.+.+.-.|.. ..+.+.+|.+++..|++++|+..++..++-.+.+. -+.
T Consensus 11 ~~A~~l~~~Gn~~~~~~~y~~Ai~~y~kal~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~ 84 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGY 84 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH----HHH
T ss_conf 999999999999999589999999999999839988--89999788999985651357999999998375578----999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 999996302699899999975311
Q gi|254780421|r 131 LQAASILVDTSSYEEISKILQKLS 154 (218)
Q Consensus 131 l~la~~~~~~~~~d~a~~~l~~~~ 154 (218)
++++.++...+++++|+..+....
T Consensus 85 ~~~g~~~~~~~~~~~A~~~~~~al 108 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999599999999999998
No 47
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics consortium, SGC, coiled coil, microtubule, motor protein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.26 E-value=0.00011 Score=46.04 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=75.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
Q ss_conf 984138766699999997312------5520699999999999951100577899999987312----689578999999
Q gi|254780421|r 62 ELFNSNKLDDARSSFEKILSQ------DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD----LAPLAVRYAATL 131 (218)
Q Consensus 62 ~~~~~~~~~~A~~~l~~l~~~------~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~----~~~~~~~~lA~l 131 (218)
.....+++++|+..+++..+- ..+.....+...++.++...|++++|+..|+..++-. ..+.+-...+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~~~~~~~~~~~a~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99986887889987888999999861668868999999871765503755889998888999999862899989999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHC------------------------------------------------CCCCHHHHH
Q ss_conf 99996302699899999975311------------------------------------------------464235689
Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLS------------------------------------------------EPSNPMHQF 163 (218)
Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~------------------------------------------------~~~~~~~~~ 163 (218)
.++.++...+++++|+..+.... ..+.|....
T Consensus 174 ~Lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999987687999999999999987776554425667888888775552146999999999999999986438846999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999988998999999999983
Q gi|254780421|r 164 ANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 164 a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
+...+|.+|..+|++++|.+.+++++.
T Consensus 254 ~~~~La~~y~~~G~~~eA~~l~e~Al~ 280 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999981999999999999998
No 48
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=4e-05 Score=48.80 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=77.8
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999511005778999999873126895789999999999630269989999997531146423568999999999
Q gi|254780421|r 92 NMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGIS 171 (218)
Q Consensus 92 ~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~ 171 (218)
....+..++..|++++|+..|...+.-.+.+. .+...++.++...+++++|+..+.....- .|....++..+|.+
T Consensus 7 L~~~G~~~~~~g~y~~A~~~~~~ai~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~lg~~ 81 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHH
T ss_conf 99999999996999999999999998689989----99999999999848832000689999986-98979999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99889989999999999835589989999
Q gi|254780421|r 172 ALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218)
Q Consensus 172 ~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218)
+...|++++|...|++++...+....+..
T Consensus 82 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 110 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99949999999999999971989899999
No 49
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle, cell division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.25 E-value=9.7e-06 Score=52.58 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=96.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC---CCC----CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 999999984138766699999997312---552----0699999999999951100577899999987312689578999
Q gi|254780421|r 56 NFAQALELFNSNKLDDARSSFEKILSQ---DNK----LYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYA 128 (218)
Q Consensus 56 ~y~~al~~~~~~~~~~A~~~l~~l~~~---~~~----~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~l 128 (218)
.+..+....+.|.++.+......+..- .+. .-..-+.+.++..++..|++.+|+..|+.++...
T Consensus 23 ~l~~~~~l~~~G~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~y~~A~~~~~~al~~~--------- 93 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK--------- 93 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------
T ss_conf 99999999986576569999999987602597642898999999999999998667999999999999961---------
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999996302699899999975311464235689999999999988998999999999983558998999999999995
Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILAN 208 (218)
Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~ 208 (218)
.+..+...+++++|+..+...... .|....++..+|.+|...|++++|.+.|+++...+..|. +.+.|+.
T Consensus 94 ----~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~Ai~~le~i~~~~~~~~-----~~~~Lg~ 163 (167)
T 3ffl_A 94 ----KALSKTSKVRPSTGNSASTPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK-----INMLLAN 163 (167)
T ss_dssp ----HCC--------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH-----HHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH-----HHHHHHH
T ss_conf ----999999877799999999999874-935699999999999983999999999999986289979-----9999999
Q ss_pred H
Q ss_conf 0
Q gi|254780421|r 209 I 209 (218)
Q Consensus 209 l 209 (218)
+
T Consensus 164 l 164 (167)
T 3ffl_A 164 L 164 (167)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 50
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A
Probab=98.24 E-value=1.6e-05 Score=51.23 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE 155 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~ 155 (218)
..+.+|.+++..|++.+|+..++.+++-.+.+ .+ |.++++..++..+++++|+..+.....
T Consensus 319 ~~~Nla~~~~kl~~~~~A~~~~~~al~~dp~n--~k--a~~~~g~~~~~~~~~e~A~~~~~kal~ 379 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN--EK--GLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HH--HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HH--HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999998589999999999999878877--69--999999999986899999999999998
No 51
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=6.2e-05 Score=47.61 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 9999999995110057789999998731268957899999999996302699899999975311
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLS 154 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~ 154 (218)
+.+.+|.+++..+++.+|+..+..++.-.+.+ . -+.++++..++..+++++|+..+....
T Consensus 198 ~~~Nla~~y~k~~~~~~A~~~~~~al~~~p~n--~--~a~~~~g~~~~~~~~~~~A~~~~~~al 257 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNN--E--KGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC--H--HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99889999999388899999999987634123--7--999999999998689999999999999
No 52
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.19 E-value=1e-05 Score=52.46 Aligned_cols=98 Identities=11% Similarity=-0.008 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218)
..|.+|..++..|++++|+..|+.++...+... .+...++.++...+++++|+..+.....- +|-...++..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~~i~~~P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_conf 999999999996999999999999998699879----99999999999848802446888999997-9898999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99988998999999999983558
Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNN 193 (218)
Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~ 193 (218)
++...|+.++|.+.|++++...+
T Consensus 94 ~~~~~g~~~~A~~~~~~~l~~~P 116 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99995999999999999998684
No 53
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=2.7e-05 Score=49.88 Aligned_cols=91 Identities=13% Similarity=0.010 Sum_probs=50.0
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99511005778999999873126895789999999999630269989999997531146423568999999999998899
Q gi|254780421|r 98 ILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGK 177 (218)
Q Consensus 98 ~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd 177 (218)
.++.+|++++|+..|+.+++-.+.+. .+...++..+...+++++|+..+.....-+ |....++..+|.++...|+
T Consensus 15 ~~~~~g~y~~Ai~~y~kal~~~p~~~----~~~~~la~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
T ss_conf 99985899999999999998099989----999999999998399999999999999849-9989999999999998599
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 8999999999983558
Q gi|254780421|r 178 VQKAKTIFEELAKDNN 193 (218)
Q Consensus 178 ~~~A~~~y~~i~~~~~ 193 (218)
+++|.+.|++++...+
T Consensus 90 ~~~A~~~~~~al~l~P 105 (477)
T 1wao_1 90 FRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999898688
No 54
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=0.00011 Score=46.09 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC------CCCHHHH
Q ss_conf 9999999999951100577899999987312689578999999999963026998999999753114------6423568
Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE------PSNPMHQ 162 (218)
Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~------~~~~~~~ 162 (218)
.+..-.++..++..|++++|+..|...+.-.+.++ .+...++..+...+++++|+..+..... ...+..+
T Consensus 4 a~~~k~~G~~~~~~g~~~~Ai~~~~~al~~~p~~~----~~~~nla~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999986899999999999987099989----99985789998819899999979999986923617678999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 9999999999988998999999999983558998999
Q gi|254780421|r 163 FANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIS 199 (218)
Q Consensus 163 ~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r 199 (218)
.....+|.++...|++++|++.|++.+...+.|..++
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 116 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999999981999999999999970699999999
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.16 E-value=0.00032 Score=43.20 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999951100577899999987312689578999999999963026998999999753114642356899999
Q gi|254780421|r 88 NPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEI 167 (218)
Q Consensus 88 a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~el 167 (218)
...+.+.++.++...|++++|+..|+..+.-.+... -+...++.++...+++++|+..+.....-. |-...++..
T Consensus 42 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~----~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~-p~~~~a~~~ 116 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLN 116 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_conf 999999999999987999999999999998099989----999999999988589999999976500138-317899998
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999889989999999999835
Q gi|254780421|r 168 LGISALKFGKVQKAKTIFEELAKD 191 (218)
Q Consensus 168 lg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218)
+|.++...|++.+|...|++++..
T Consensus 117 l~~~~~~~g~~~~A~~~~~~al~~ 140 (275)
T 1xnf_A 117 RGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 623210236699999999999872
No 56
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.16 E-value=0.0001 Score=46.26 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=52.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999996302699899999975311464235689999999999988998999999999983558998999999999995
Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILAN 208 (218)
Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~ 208 (218)
..+.++.+++..+++++|+..+.....-+ |....++..+|.++...|++++|+..|++++...+....++........-
T Consensus 90 ~~~Nla~~y~~~~~~~~Ai~~~~~aL~l~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~kal~l~P~n~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999998689999999999999869-88699999999999997799999999999997298999999999999999
Q ss_pred H
Q ss_conf 0
Q gi|254780421|r 209 I 209 (218)
Q Consensus 209 l 209 (218)
+
T Consensus 169 ~ 169 (198)
T 2fbn_A 169 L 169 (198)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 57
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.16 E-value=7.7e-05 Score=47.02 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218)
|.+.+|.++...|++++|+..|..++...+.+.. ....++.+....++++.+...+.....-. |....++..+|.
T Consensus 3 ay~~lg~~~~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~a~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE----AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_conf 8999999999968999999999999873954299----99999999998076155468999999859-877289998818
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 999889989999999999835589989999999999950
Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANI 209 (218)
Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l 209 (218)
++...|++++|...|++++...+..+......-.....+
T Consensus 78 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 999848899999999999871986199999999999996
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.15 E-value=4.6e-05 Score=48.38 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999999984138766699999997312552069999999999995110057789999998731268957899999999
Q gi|254780421|r 54 GENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQA 133 (218)
Q Consensus 54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~l 133 (218)
.+.-......+..+++++|+..+.+-++..|+. ..+.+.+|.++...|++++|+..++.+++-.+.. . -|.+++
T Consensus 5 ~~lk~~Gn~~~~~~~y~~Ai~~y~~Ai~~~p~~--~~~~~n~a~~y~~l~~~~~A~~~~~~al~l~p~~--~--~a~~~~ 78 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQS--V--KAHFFL 78 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--H--HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--H--HHHHHH
T ss_conf 999999999998699999999999999858998--9999999999998599899999999999719857--8--999999
Q ss_pred HHHHHCCCCHHHHHHHHHH
Q ss_conf 9963026998999999753
Q gi|254780421|r 134 ASILVDTSSYEEISKILQK 152 (218)
Q Consensus 134 a~~~~~~~~~d~a~~~l~~ 152 (218)
|.++...+++++|+..+..
T Consensus 79 g~~~~~~~~~~~A~~~~~k 97 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999987765788899999
No 59
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.12 E-value=0.00012 Score=45.89 Aligned_cols=120 Identities=15% Similarity=0.035 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999999984138766699999997312552069999999999995110057789999998731268957899999
Q gi|254780421|r 51 NIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAAT 130 (218)
Q Consensus 51 ~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~ 130 (218)
..+-..+..+......+++++|+..|++.+...++. ..+.+.++.++...|++++|+..+..++...+.+. .+.
T Consensus 10 ~~~e~l~~~G~~~~~~~~y~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~ 83 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS----KAY 83 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHH
T ss_conf 999999999999999589999999999999868998--99998488998872776889999999998863237----999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999630269989999997531146423568999999999998899
Q gi|254780421|r 131 LQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGK 177 (218)
Q Consensus 131 l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd 177 (218)
+.++.++...+++++|+..+.....- .|....+...+|.++.+.++
T Consensus 84 ~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~l~e 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALEL-DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCC
T ss_conf 88999985025699999999999976-96989999999999998738
No 60
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.49A {Deinococcus radiodurans R1}
Probab=98.11 E-value=0.00021 Score=44.27 Aligned_cols=155 Identities=13% Similarity=0.050 Sum_probs=99.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC---CCHHHHHHH
Q ss_conf 99999984138766699999997312----55206999999999999511005778999999873126---895789999
Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL---APLAVRYAA 129 (218)
Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~---~~~~~~~lA 129 (218)
+.-+......+++++|+..+...... ++..-...+...++.++...|++++|+..+...+.... .........
T Consensus 30 ~~LG~~~~~~g~~~eA~~~~~~a~~~~~~~~~~~~~a~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 109 (203)
T 3gw4_A 30 FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999879999999999999998988589868999999999999980767776888778887636542112688998
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999996302699899999975311-----46423568999999999998899899999999998355899899999999
Q gi|254780421|r 130 TLQAASILVDTSSYEEISKILQKLS-----EPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQM 204 (218)
Q Consensus 130 ~l~la~~~~~~~~~d~a~~~l~~~~-----~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~ 204 (218)
....+......+.++++........ ....+..+.+...+|.++.+.|++++|++.|++.+.-...-.+ +..+..
T Consensus 110 ~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~Lg~~~~~~g~~~~A~~~~~~Al~l~~~~~d-~~~~~~ 188 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED-SEAVNE 188 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-HHHHHH
T ss_conf 8757899886110488779999999999874897579999999999999978999999999999999998799-899999
Q ss_pred HHHHHCCC
Q ss_conf 99950034
Q gi|254780421|r 205 ILANIIAS 212 (218)
Q Consensus 205 ~l~~l~~~ 212 (218)
++..|.+.
T Consensus 189 i~~~L~~l 196 (203)
T 3gw4_A 189 LMTRLNGL 196 (203)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
T ss_conf 99998680
No 61
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.49A {Deinococcus radiodurans R1}
Probab=98.09 E-value=0.00047 Score=42.17 Aligned_cols=126 Identities=10% Similarity=0.098 Sum_probs=97.9
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCC
Q ss_conf 841387666999999973125520699999999999951100577899999987312--689578999999999963026
Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD--LAPLAVRYAATLQAASILVDT 140 (218)
Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~--~~~~~~~~lA~l~la~~~~~~ 140 (218)
.++.++++.|...++.++...++ ...+++.++.++...|++++|+..++..+... ..+......+...++.++...
T Consensus 2 a~~~~~y~~A~~~~~~~l~~~~~--~~~a~~~LG~~~~~~g~~~eA~~~~~~a~~~~~~~~~~~~~a~a~~~lg~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPAT--ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHCCCHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 54247999999999998768975--5999999999999879999999999999998988589868999999999999980
Q ss_pred CCHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99899999975311------464235689999999999988998999999999983
Q gi|254780421|r 141 SSYEEISKILQKLS------EPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 141 ~~~d~a~~~l~~~~------~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
+++++++..+.... ..............|..+...|+.++|...+++.+.
T Consensus 80 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 135 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 76777688877888763654211268899887578998861104887799999999
No 62
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.09 E-value=0.00027 Score=43.61 Aligned_cols=130 Identities=13% Similarity=0.028 Sum_probs=90.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HH
Q ss_conf 99984138766699999997312552069999999999995110057789999998731268957899999999996-30
Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASI-LV 138 (218)
Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~-~~ 138 (218)
+......++.+.|...+++.....++. .....+..+..+...|+.+.|+..|...+...+.... +-+.++.+ ..
T Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~a~l~~~ 402 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH----VYVTAALMEYY 402 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH----HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHH
T ss_conf 999863021899999999877626614-5899999999999806689999999999984899799----99999999988
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 269989999997531146423568999999999998899899999999998355899
Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218)
Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218)
..++++.+.+.+....... |..+......|..+.+.|++++|++.|++++...+.+
T Consensus 403 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~e~al~~~~~~ 458 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 6547999999999998649-9969999999999988889999999999998668998
No 63
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.07 E-value=0.00017 Score=44.96 Aligned_cols=115 Identities=20% Similarity=0.216 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999
Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218)
Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218)
..|.-+....+.+++++|+..|+......+.. ..+...++.++...+++++|+..++..+...+.+. .+.+.++
T Consensus 11 ay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~la 84 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH----HHHHHHC
T ss_conf 99999999999689999999999998759566--99999999999982882267999999998689986----9999767
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 963026998999999753114642356899999999999889
Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFG 176 (218)
Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~G 176 (218)
.++...+++++|+..+.....- .|....+...+|.++.++|
T Consensus 85 ~~~~~~~~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~G 125 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCC
T ss_conf 4766027599999999999987-8897999999999999774
No 64
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.07 E-value=0.00031 Score=43.29 Aligned_cols=107 Identities=12% Similarity=-0.015 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218)
.....|..++..|++++|+..|..++.-.+.+. .+...++..++..+++++|+..+.....- .|....++..+|.
T Consensus 15 ~l~~~Gn~~~~~~~y~~Ai~~y~kal~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~ 89 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_conf 999999999995899999999999998399888----99997889999856513579999999983-7557899999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99988998999999999983558998999999
Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRS 202 (218)
Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra 202 (218)
++...|++++|++.|++++...+.+.......
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~ 121 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99995999999999999987296989999999
No 65
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1
Probab=98.06 E-value=4e-05 Score=48.79 Aligned_cols=129 Identities=9% Similarity=-0.000 Sum_probs=87.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998413876669999999731255206999999999999511005778999999873126895789999999999630
Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILV 138 (218)
Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~ 138 (218)
++......++.++|+..+++.++..|+. .-++..++.++...|+.++|+..|+..++..+..... + ..++.+..
T Consensus 3 q~~~aL~~G~l~eAl~~l~~alr~~P~d--a~ar~~L~~lL~~~G~~~~A~~qL~~a~~l~P~~~~~---~-~~~~~ll~ 76 (273)
T 1zbp_A 3 QWKNALSEGQLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG---A-SQLRHLVK 76 (273)
T ss_dssp CHHHHTTTTCHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH---H-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---H-HHHHHHHH
T ss_conf 6999998799999999999999978999--9999999999998799999999999999879886899---9-99999998
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 2699899999975311464235689999999999988998999999999983558
Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNN 193 (218)
Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~ 193 (218)
......++........-...|-...++.+++.++...|+.++|.+.|.++....+
T Consensus 77 a~~~r~e~~a~~~~~~~~~~p~~~~a~l~~a~~~~~~Gd~e~A~~~~~~A~~l~P 131 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 3457589999999863313976899999999999977898999999999973699
No 66
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.05 E-value=0.00056 Score=41.70 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=92.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Q ss_conf 99984138766699999997312---552069999999999995110057789999998731--2689578999999999
Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQ---DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVAND--DLAPLAVRYAATLQAA 134 (218)
Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~---~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~--~~~~~~~~~lA~l~la 134 (218)
+......++++++...+.+.... .+........+..+......++.+.|+..|...+.- ....+....-+...++
T Consensus 83 g~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~a~~~y~~A~~i~~~~~~~~~~~~~~~~la 162 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99998726589999989999999886189067778887788998714599999999999999987599647999997488
Q ss_pred HHHHCCCCHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 963026998999999753114-----6423568999999999998899899999999998355
Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSE-----PSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN 192 (218)
Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~-----~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~ 192 (218)
.++...+++++|+..+..... ...+....+...+|.+++..||+..|...|++.....
T Consensus 163 ~~~~~~~~y~eA~~~~~~a~~i~~~~~~~~~~~~~~~~l~~~~l~~gd~~~A~~~~~~a~~~~ 225 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 998871689999999999999999868909999999979999998689999999999985566
No 67
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.02 E-value=0.00026 Score=43.77 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999
Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218)
Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218)
.....|..+......+++++|+..++.++...|.. +.+.+.+|.++...|++++|+..|+.++...+.+. .+.+
T Consensus 20 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~~~~~~~~Ai~~~~~a~~~~~~~~----~~~~ 93 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCH----HHHH
T ss_conf 49999999999998699999999999999859599--99999999999986985789999997562486539----9999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 99996302699899999975311
Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLS 154 (218)
Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~ 154 (218)
.++.++...+++++|+..+....
T Consensus 94 ~la~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999985578999999999998
No 68
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=2.2e-05 Score=50.32 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 9999999999999841387666999999973125520---------------6999999999999511005778999999
Q gi|254780421|r 50 KNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKL---------------YNPLSNMYIASILVAKGDTKNAAEIFLK 114 (218)
Q Consensus 50 ~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~---------------ya~lA~l~lA~~~~~~g~~~~A~~~l~~ 114 (218)
...+......+...+..++++.|+..++..++..+.. +.....+.++.++...+++.+|+..+..
T Consensus 176 ~~~a~~~k~~GN~~fk~g~y~~Ai~~Y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~~~~Ai~~~~k 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999999999985999999999799997486325556555589999999999999999999983566666889998
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHH
Q ss_conf 8731268957899999999996302699899999975311464235689999999999988998999-999999983
Q gi|254780421|r 115 VANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKA-KTIFEELAK 190 (218)
Q Consensus 115 i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A-~~~y~~i~~ 190 (218)
++...+.+ .+ |.++++..+...+++++|+..+.....-+ |-...++..++.++.+.++..++ ++.|+++..
T Consensus 256 al~~~p~~--~k--a~~~~g~a~~~lg~~~~A~~~~~kAl~ld-P~n~~~~~~L~~l~~~~~~~~~~ek~~y~kmf~ 327 (338)
T 2if4_A 256 VLTEEEKN--PK--ALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHCTTC--HH--HHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHCCCCC--HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 64228752--89--99999999998789999999999999839-899999999999999998699999999998755
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.00 E-value=5.5e-05 Score=47.91 Aligned_cols=95 Identities=8% Similarity=0.067 Sum_probs=52.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH------------
Q ss_conf 99999984138766699999997312552069999999999995110057789999998731268957------------
Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLA------------ 124 (218)
Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~------------ 124 (218)
|.-+......+++++|+..|++.++-.+.. +.+.+.++.++...|++++|+..|+..+........
T Consensus 41 ~nlG~~y~~~~~~~~A~~~f~~Ai~l~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 118 (213)
T 1hh8_A 41 FNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 118 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEE
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 999999998699999999999999866045--788877999999854589999999999985836725789986432365
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 89999999999630269989999997531
Q gi|254780421|r 125 VRYAATLQAASILVDTSSYEEISKILQKL 153 (218)
Q Consensus 125 ~~~lA~l~la~~~~~~~~~d~a~~~l~~~ 153 (218)
...-+.+.++.++...+++++|...+...
T Consensus 119 ~~~~~~~~~g~~~~~~~~~~~A~~~l~~A 147 (213)
T 1hh8_A 119 FACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp EHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 37999999999999969999999999999
No 70
>2hr2_A Hypothetical protein; NP_663012.1, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 2.54A {Chlorobium tepidum tls} SCOP: a.118.8.8
Probab=97.96 E-value=0.00032 Score=43.22 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=70.8
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-------C-
Q ss_conf 9999999511005778999999873126895--------78999999999963026998999999753114-------6-
Q gi|254780421|r 93 MYIASILVAKGDTKNAAEIFLKVANDDLAPL--------AVRYAATLQAASILVDTSSYEEISKILQKLSE-------P- 156 (218)
Q Consensus 93 l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~--------~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~-------~- 156 (218)
+..+..++..|++++|+..|+..++-.+..+ .....+...++..+...++++++...+..... .
T Consensus 15 ~~~g~~~~~~g~y~eA~~~y~kAl~~~~~~~~~~~~~~~~~~a~~~~n~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999859999999999999998234106777502377899999999999980869999999999998655313542
Q ss_pred --CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHCC
Q ss_conf --423568999999999998899899999999998355-------8998999999999995003
Q gi|254780421|r 157 --SNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN-------NSPFGISTRSQMILANIIA 211 (218)
Q Consensus 157 --~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~-------~~p~~~r~ra~~~l~~l~~ 211 (218)
..+....+...+|.++...|++++|++.|++++.-. +.-..+...+...++.|++
T Consensus 95 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~Al~i~~~~~~~~~~~~~~~~~~~~~l~~lg~ 158 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 158 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 2166668988876999998658848899999999986574040018999999999999997569
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transcription activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.96 E-value=0.00018 Score=44.78 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=43.4
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
Q ss_conf 841387666999999973125520---699999999999951100577899999987312--689578999999999963
Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKL---YNPLSNMYIASILVAKGDTKNAAEIFLKVANDD--LAPLAVRYAATLQAASIL 137 (218)
Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~---ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~--~~~~~~~~lA~l~la~~~ 137 (218)
....|++++|+..+++.+...++. -...+...++.+++..|++++|+..+...+.-. ..+......+...++.++
T Consensus 24 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99887999999999999854889992999999999999999879999999999999997475368799999999999999
Q ss_pred HCCCCHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 02699899999975311-------46423568999999999998899899999999998
Q gi|254780421|r 138 VDTSSYEEISKILQKLS-------EPSNPMHQFANEILGISALKFGKVQKAKTIFEELA 189 (218)
Q Consensus 138 ~~~~~~d~a~~~l~~~~-------~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218)
...++++++...+.... .+..+........+|.++...|++++|...|++++
T Consensus 104 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~a~~~~~~a~ 162 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 98154899999999999997860466676999999999999998799899999999977
No 72
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.95 E-value=0.00014 Score=45.33 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=70.1
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
Q ss_conf 99511005778999999873126895789999999999630269---989999997531146-42356899999999999
Q gi|254780421|r 98 ILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTS---SYEEISKILQKLSEP-SNPMHQFANEILGISAL 173 (218)
Q Consensus 98 ~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~---~~d~a~~~l~~~~~~-~~~~~~~a~ellg~~~~ 173 (218)
.+++.+++++|...|+..+...+.+.. +.+.++..+.... ++++++..+...... .+|....++..+|.+|.
T Consensus 7 ~~~~~edl~kAek~Y~~al~~~~~~~~----~~~n~a~~L~~s~~~~~~~~Ai~ll~~~l~~~~~~~~~~~l~~La~~y~ 82 (152)
T 1pc2_A 7 ELVSVEDLLKFEKKFQSEKAAGSVSKS----TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 82 (152)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTTCCCHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 245899999999999998710999999----9999999998758777899999999998744699419999999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 88998999999999983558998
Q gi|254780421|r 174 KFGKVQKAKTIFEELAKDNNSPF 196 (218)
Q Consensus 174 ~~Gd~~~A~~~y~~i~~~~~~p~ 196 (218)
+.|++++|++.|++++...+...
T Consensus 83 ~~g~~~~A~~~~~~aL~idP~n~ 105 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 86999999999999997693989
No 73
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A*
Probab=97.91 E-value=0.00079 Score=40.75 Aligned_cols=129 Identities=9% Similarity=0.012 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999
Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218)
Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218)
..+.-+......|+.++|+..+++.+.-.++. ..+...+|.++.+.|++++|+..|+.+++-.+... .+.+.++
T Consensus 25 a~~~Lg~~~~~~g~~~~A~~~~~~Al~l~P~~--~~a~~~Lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg 98 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP----GIALWLG 98 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH----HHHHHHH
T ss_conf 99999999998789999999999999829899--99999999999985999999999999997199999----9999999
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHH
Q ss_conf 96302699899999975311464235689999999999988998---999999999983
Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKV---QKAKTIFEELAK 190 (218)
Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~---~~A~~~y~~i~~ 190 (218)
.++.+.+++++|+..+.....-. |-...+...++......+|. +++...+.+.+.
T Consensus 99 ~~~~~~g~~~~A~~~~~~Al~l~-P~~~~~~~~l~~~~~~l~dw~~~~~~~~~l~~~i~ 156 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99998297123357777652238-86237788888777764022103567778767765
No 74
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, cytoplasm, plasmid, virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A
Probab=97.91 E-value=0.00062 Score=41.39 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999
Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218)
Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218)
.....|..+....+.+++++|+..|++++...|.. ..+.+.++.++...|++++|+..|..++...+.++ .+.+
T Consensus 35 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~ 108 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----TPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC----HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHH
T ss_conf 79999999999998699999999999999878999--99999999999985986899999999998555786----9998
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 9999630269989999997531146
Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLSEP 156 (218)
Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~~~ 156 (218)
.++.++...+++++|+..++.....
T Consensus 109 ~~g~~~~~~g~~~~A~~~~~~ai~~ 133 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 7779999878999999999999863
No 75
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=0.00024 Score=43.96 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH-------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 99999999999511005778999999873126895-------------78999999999963026998999999753114
Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPL-------------AVRYAATLQAASILVDTSSYEEISKILQKLSE 155 (218)
Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~-------------~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~ 155 (218)
.......+..++..|++.+|+..|...+.-.+.+. .++....+.++..++..+++++++..+.....
T Consensus 179 a~~~k~~GN~~fk~g~y~~Ai~~Y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~~~~Ai~~~~kal~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999999985999999999799997486325556555589999999999999999999983566666889998642
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 642356899999999999889989999999999835589989999
Q gi|254780421|r 156 PSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218)
Q Consensus 156 ~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218)
. .|....++..+|.++...|++++|++.|++++.-.+....++.
T Consensus 259 ~-~p~~~ka~~~~g~a~~~lg~~~~A~~~~~kAl~ldP~n~~~~~ 302 (338)
T 2if4_A 259 E-EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302 (338)
T ss_dssp H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 2-8752899999999999878999999999999983989999999
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.89 E-value=0.0011 Score=39.82 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999999999999999999999984-138766699999997312----552069999999999995110057789999
Q gi|254780421|r 38 WFYLFDGSHEKKKNIVGENFAQALELF-NSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVAKGDTKNAAEIF 112 (218)
Q Consensus 38 ~~~~~~~~q~~~~~~as~~y~~al~~~-~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l 112 (218)
++.++......+.+.+.+.|..+...+ ..+++++|+..+.+-.+- ++..-...+...++.++...|++++|+..+
T Consensus 21 ~~~~~~~~~~~~ye~A~~~y~~aa~~f~~~k~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~~~~y~~~~~~~~A~~~~ 100 (292)
T 1qqe_A 21 FMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 88885389621199999999999999998789999999999999999886997999999999999998769879999999
Q ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCC----CC-CHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99873126--895789999999999630-26998999999753114----64-235689999999999988998999999
Q gi|254780421|r 113 LKVANDDL--APLAVRYAATLQAASILV-DTSSYEEISKILQKLSE----PS-NPMHQFANEILGISALKFGKVQKAKTI 184 (218)
Q Consensus 113 ~~i~~~~~--~~~~~~~lA~l~la~~~~-~~~~~d~a~~~l~~~~~----~~-~~~~~~a~ellg~~~~~~Gd~~~A~~~ 184 (218)
...++-.. ........+...++.++. ..+++++|+..+..... .+ ..........+|.++...|++++|.+.
T Consensus 101 ~~a~~~~~~~g~~~~a~~~~~~la~~~~~~~~~~~~A~~~y~kA~~~~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999877537416899999999899998721099999999999987553688898999999999999984369999999
Q ss_pred HHHHHHCCC
Q ss_conf 999983558
Q gi|254780421|r 185 FEELAKDNN 193 (218)
Q Consensus 185 y~~i~~~~~ 193 (218)
|++++....
T Consensus 181 y~~a~~~~~ 189 (292)
T 1qqe_A 181 YSKLIKSSM 189 (292)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
T ss_conf 999998734
No 77
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint center for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.86 E-value=6.4e-05 Score=47.51 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 00577899999987312689578999999999963026998999999753114642356899999999999889989999
Q gi|254780421|r 103 GDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAK 182 (218)
Q Consensus 103 g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~ 182 (218)
|+.++|+..|+..++-...++ -...+.+.++..+...+++++|+..+.....-. |-...+...+|.++...|++++|.
T Consensus 4 G~~~eAi~~y~kAl~~~~~~~-~~~~a~~~lg~~y~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~eA~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 599999999999983588996-499999999999999499999999998778507-898999998999985612599999
Q ss_pred HHHHHHHHCCCCCHHHHH
Q ss_conf 999999835589989999
Q gi|254780421|r 183 TIFEELAKDNNSPFGIST 200 (218)
Q Consensus 183 ~~y~~i~~~~~~p~~~r~ 200 (218)
+.+++++...+..+.+..
T Consensus 82 ~~~~~~~~~~~~~~~i~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHH
T ss_conf 999999873899889999
No 78
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.83 E-value=0.00049 Score=42.06 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999
Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218)
Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218)
.....|..+......+++++|+..|+..++..+.. ..+.+.+|.++...|++++|+..|+.++...+.++ -+.+
T Consensus 17 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~ 90 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP----RFPF 90 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHH
T ss_conf 59999999999998699999999999999839987--99999973999994898999999999987443889----9999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 999963026998999999753114
Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLSE 155 (218)
Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~~ 155 (218)
+++.+++..+++++|.+.+.....
T Consensus 91 ~la~~~~~~~~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 767999885899999999999987
No 79
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.82 E-value=0.00017 Score=44.96 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999999984138766699999997312552069999999999995110057789999998731268957899999999
Q gi|254780421|r 54 GENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQA 133 (218)
Q Consensus 54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~l 133 (218)
...|..+......+++++|+..|++++...|+. ..+...+|.++...|++++|+..|+.++.-.+.+. -+.+.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~~i~~~P~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l 91 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAAL 91 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH----HHHHHH
T ss_conf 999999999999699999999999999869987--99999999999984880244688899999798989----999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 9963026998999999753114642356
Q gi|254780421|r 134 ASILVDTSSYEEISKILQKLSEPSNPMH 161 (218)
Q Consensus 134 a~~~~~~~~~d~a~~~l~~~~~~~~~~~ 161 (218)
+.++...+++++|++.+.....-.+.|.
T Consensus 92 a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 119 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999995999999999999998684987
No 80
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.79 E-value=0.00094 Score=40.30 Aligned_cols=114 Identities=16% Similarity=0.046 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999
Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218)
Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218)
++......+...+..+++++|+..+.+.++..|.. +.+.+.+|.++...|++++|+..+...+.-.+.+. .+.+
T Consensus 3 ~~~~L~~~G~~~~~~g~y~~A~~~~~~ai~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG----KGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH----HHHH
T ss_conf 89999999999999699999999999999868998--99999999999984883200068999998698979----9999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99996302699899999975311464235689999999999
Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISA 172 (218)
Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~ 172 (218)
+++.++...+++++|+..+.....-. |-...+...++.+.
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~l~ 116 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 99999999499999999999999719-89899999999675
No 81
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus HB27}
Probab=97.78 E-value=0.0001 Score=46.27 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=96.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHH-
Q ss_conf 999998413876669999999731255206999999999999511005778999999873126895-789999999999-
Q gi|254780421|r 58 AQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPL-AVRYAATLQAAS- 135 (218)
Q Consensus 58 ~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~-~~~~lA~l~la~- 135 (218)
.-+....+.|++++|+..|++.++..|.. +.+.+.+|.++...|++++|+..|+.+++..+... ....++......
T Consensus 10 ~lG~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 87 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKENPQD--PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHH
T ss_conf 99999998789999999999999868999--9999999999998699999999999876038504788750222210012
Q ss_pred -----HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf -----630269989999997531146423568999999999998899899999999998355899899999999
Q gi|254780421|r 136 -----ILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQM 204 (218)
Q Consensus 136 -----~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~ 204 (218)
.....+.+++|+..+.....- .|-...+...+|.++...+++++|...|++++...+.|.....++..
T Consensus 88 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~lg~~ 160 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERV-NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 34788998715399999999888744-99869999999999999689999999999998179984699998588
No 82
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.77 E-value=0.0018 Score=38.61 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=38.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Q ss_conf 99998413876669999999731----255206999999999999511005778999999873126--895789999999
Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILS----QDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL--APLAVRYAATLQ 132 (218)
Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~----~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~--~~~~~~~lA~l~ 132 (218)
.+......++.+.++..+++-.. .+.+.....+...++.++...|++++|+..|+..+.-.. .+.....-+.+.
T Consensus 121 ~~~~~~~~~~~~~a~~~y~~A~~i~~~~~~~~~~~~~~~~la~~~~~~~~y~eA~~~~~~a~~i~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 78899871459999999999999998759964799999748899887168999999999999999986890999999997
Q ss_pred HHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999630269989999997531
Q gi|254780421|r 133 AASILVDTSSYEEISKILQKL 153 (218)
Q Consensus 133 la~~~~~~~~~d~a~~~l~~~ 153 (218)
++.+++..+++..|...+...
T Consensus 201 l~~~~l~~gd~~~A~~~~~~a 221 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999868999999999998
No 83
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.74 E-value=0.0019 Score=38.33 Aligned_cols=130 Identities=15% Similarity=0.056 Sum_probs=85.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 984138766699999997312552069999999999995110057------78999999873126895789999999999
Q gi|254780421|r 62 ELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTK------NAAEIFLKVANDDLAPLAVRYAATLQAAS 135 (218)
Q Consensus 62 ~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~------~A~~~l~~i~~~~~~~~~~~~lA~l~la~ 135 (218)
..........+...+.+.....++.+. +....+..+...|+.. ++...+.........+..........++.
T Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (306)
T 3dra_A 155 DTFDLHNDAKELSFVDKVIDTDLKNNS--AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 334121299999999998744984089--999999999970205432447899999877877483557999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 63026998999999753114642356899999999999889989999999999835589
Q gi|254780421|r 136 ILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNS 194 (218)
Q Consensus 136 ~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~ 194 (218)
.....+++++++..+...... .|-...++..+|.++..+|++++|++.|+.++...|+
T Consensus 233 ~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~y~~~g~~~eA~~~y~~l~~~~DP 290 (306)
T 3dra_A 233 FDRSITQLEEFSLQFVDLEKD-QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp TTCCGGGGHHHHHTTEEGGGT-EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 988764799999999999864-9998999999999999879999999999999873592
No 84
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.71 E-value=0.0021 Score=38.09 Aligned_cols=121 Identities=8% Similarity=0.041 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHCCCCH
Q ss_conf 387666999999973125520699999999999951100577899999987312689--578999999999963026998
Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAP--LAVRYAATLQAASILVDTSSY 143 (218)
Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~--~~~~~lA~l~la~~~~~~~~~ 143 (218)
.++.+.+...++......|+. ...+..+..+...|++++|...|...+...... ........+..+..+...+++
T Consensus 226 ~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEMSDGM---FLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp TTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 230889999888875259968---99999999999874399999999999986730010131089999999999987998
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999975311464235689999999999988998999999999983
Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
+++...+....... |-........+..+...|++++|++.|++++.
T Consensus 303 ~~a~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 348 (493)
T 2uy1_A 303 ELFRKLFIELGNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999997749-98899999999998754489999999999987
No 85
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.71 E-value=0.0013 Score=39.35 Aligned_cols=122 Identities=15% Similarity=0.026 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 38766699999997312552069999999999995110057789999998731268957899999999996302699899
Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218)
Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218)
.+..++|...+.......+.. .....+..+......|+.+.|...+...+.....+.. ...+..+..+...+++++
T Consensus 299 ~~~~~~a~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHCCCHHH
T ss_conf 303388999998888505300-1789999999986302189999999987762661458---999999999998066899
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99997531146423568999999999-998899899999999998355
Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGIS-ALKFGKVQKAKTIFEELAKDN 192 (218)
Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~-~~~~Gd~~~A~~~y~~i~~~~ 192 (218)
|+..+....... |........+|.+ +...|+.+.|++.|++++...
T Consensus 375 A~~~~~~al~~~-p~~~~~~~~~a~l~~~~~~~~~~A~~~~~~al~~~ 421 (530)
T 2ooe_A 375 GRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 999999999848-99799999999999886547999999999998649
No 86
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.71 E-value=0.0013 Score=39.32 Aligned_cols=25 Identities=8% Similarity=-0.049 Sum_probs=9.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999998899899999999998
Q gi|254780421|r 165 NEILGISALKFGKVQKAKTIFEELA 189 (218)
Q Consensus 165 ~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218)
...+|.++.+.|++++|.+.|++++
T Consensus 203 ~~~~~~~~~~~~~~~~al~~~~~~i 227 (382)
T 2h6f_A 203 WQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8898999997231689999999999
No 87
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.66 E-value=0.00039 Score=42.63 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 77899999987312689578999999999963026998999999753114642356899999999999889989999999
Q gi|254780421|r 106 KNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIF 185 (218)
Q Consensus 106 ~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y 185 (218)
+++++.|+.++...+.+. .+.+.+|.+++..+++++|+..+...... .|....++..+|.++...|++++|++.|
T Consensus 2 q~~~e~le~~l~~~pd~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 899999999987299989----99999999999859999999999997887-4305999999999999978999999999
Q ss_pred HHHHH
Q ss_conf 99983
Q gi|254780421|r 186 EELAK 190 (218)
Q Consensus 186 ~~i~~ 190 (218)
++++.
T Consensus 77 ~~al~ 81 (115)
T 2kat_A 77 ESGLA 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99996
No 88
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.61 E-value=4.8e-05 Score=48.29 Aligned_cols=124 Identities=10% Similarity=-0.009 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999
Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218)
Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218)
+....+....+.+++++|+..+++.++..+.. ..+.+.+|.++...|++++|+..++.+++-.+... -|.++++
T Consensus 8 ~lk~~Gn~~~~~g~y~~Ai~~y~kal~~~p~~--~~~~~~la~~~~~l~~~~~Ai~~~~~al~l~p~~~----~a~~~lg 81 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGYYRRA 81 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHH
T ss_conf 99999999998589999999999999809998--99999999999983999999999999998499989----9999999
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHHHCCCHHHHHHHH
Q ss_conf 96302699899999975311464235689999999--9999889989999999
Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSNPMHQFANEILG--ISALKFGKVQKAKTIF 185 (218)
Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg--~~~~~~Gd~~~A~~~y 185 (218)
.++...+++++|+..+.....-. |....+...++ ..++++.++++|....
T Consensus 82 ~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~e~A~~~~ 133 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998599999999999989868-89799999999999998888888755545
No 89
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A
Probab=97.59 E-value=0.0017 Score=38.62 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 9999999995110057789999998731268-----------95789999999999630269989999997531146423
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLA-----------PLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNP 159 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~-----------~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~ 159 (218)
..-..+..++..|++..|+..|...+.--.. ...+.....+.++..++..+++++|+..+.....-+ |
T Consensus 270 ~~k~~Gn~~fk~g~y~~A~~~Y~kAl~~l~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~al~~d-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
T ss_conf 887667899976899999999999999987642676555521337899999999999998589999999999999878-8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 56899999999999889989999999999835589989999
Q gi|254780421|r 160 MHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218)
Q Consensus 160 ~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218)
-..-++..+|.++...|++++|+..|++++.-.+....++.
T Consensus 349 ~n~ka~~~~g~~~~~~~~~e~A~~~~~kal~l~P~n~~~~~ 389 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 77699999999999868999999999999985899899999
No 90
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.58 E-value=0.00098 Score=40.17 Aligned_cols=139 Identities=18% Similarity=0.113 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC----C----------HHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999999999999984138766699999997312552----0----------6999999999999511005778999
Q gi|254780421|r 46 HEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNK----L----------YNPLSNMYIASILVAKGDTKNAAEI 111 (218)
Q Consensus 46 q~~~~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~----~----------ya~lA~l~lA~~~~~~g~~~~A~~~ 111 (218)
.+.+...+......+...+..+++++|+..+.+.+...+. . ......+.+|.++...|++++|+..
T Consensus 31 ~~e~~~~a~~lke~Gn~~fk~g~y~~Ai~~Y~kAL~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~y~~~~~~~~Ai~~ 110 (198)
T 2fbn_A 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 89999999999999999998699999999999998538343101045778762315899999999999986899999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHH
Q ss_conf 99987312689578999999999963026998999999753114642356899999999999889989-9999999998
Q gi|254780421|r 112 FLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQ-KAKTIFEELA 189 (218)
Q Consensus 112 l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~-~A~~~y~~i~ 189 (218)
+..++.-.+.. . -|.++.+.++...+++++|+..+.....-+ |-...+...++.+..+..... .-+..|..+.
T Consensus 111 ~~~aL~l~p~~--~--~a~~~~g~~~~~lg~~~~A~~~~~kal~l~-P~n~~~~~~l~~~~~~~~~~~~~ek~~y~~~F 184 (198)
T 2fbn_A 111 ASKVLKIDKNN--V--KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHSTTC--H--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHCCCC--H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999869886--9--999999999999779999999999999729-89999999999999999999999999999887
No 91
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.56 E-value=0.0016 Score=38.79 Aligned_cols=93 Identities=12% Similarity=-0.020 Sum_probs=75.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999951100577899999987312689578999999999963026998999999753114642356899999999999
Q gi|254780421|r 94 YIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISAL 173 (218)
Q Consensus 94 ~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~ 173 (218)
..+..++.+|++++|+..|...+.-.+... .+.+.+|..+...+++++|+..+.....-+ |..+.++..+|.++.
T Consensus 9 ~~Gn~~~~~~~y~~Ai~~y~~Ai~~~p~~~----~~~~n~a~~y~~l~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~ 83 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 999999986999999999999998589989----999999999998599899999999999719-857899999999999
Q ss_pred HCCCHHHHHHHHHHHHHC
Q ss_conf 889989999999999835
Q gi|254780421|r 174 KFGKVQKAKTIFEELAKD 191 (218)
Q Consensus 174 ~~Gd~~~A~~~y~~i~~~ 191 (218)
..|++++|.+.|++++..
T Consensus 84 ~~~~~~~A~~~~~kal~l 101 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 877657888999999874
No 92
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.54 E-value=0.0038 Score=36.55 Aligned_cols=136 Identities=9% Similarity=0.057 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CCCHH
Q ss_conf 99999999841387666999999973125------520699999999999951100577899999987312----68957
Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQD------NKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD----LAPLA 124 (218)
Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~------~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~----~~~~~ 124 (218)
..+..+......+++++++..+++.++.. .+.+-.-..-.++.++...|++++|...++..++-. ..+.+
T Consensus 311 ~~~e~~~~~~~~~~~~ea~~l~~~~L~~~~~il~~~h~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h~ 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 66787876663367788899999999998750699627789999999999998779889999999999999997699998
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH-------HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 899999999996302699899999975-------311464235689999999999988998999999999983
Q gi|254780421|r 125 VRYAATLQAASILVDTSSYEEISKILQ-------KLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 125 ~~~lA~l~la~~~~~~~~~d~a~~~l~-------~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
....+...+|.++...+++++|+..+. ...+++.|........++..+...+++.+|...|+++.+
T Consensus 391 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kAl~i~~~~~G~~hp~~~~l~~~l~~~~~~l~~~~~a~~~~~~~~~ 463 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999987898999999999999999974999842999999999999998657888999999999
No 93
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.52 E-value=0.00088 Score=40.47 Aligned_cols=108 Identities=14% Similarity=0.097 Sum_probs=80.6
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 8413876669999999731255206999999999999511---0057789999998731268957899999999996302
Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAK---GDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD 139 (218)
Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~---g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~ 139 (218)
....++++.|...+++.+...+.. +-++|.+|..++.. +++.+|+..|+.++.....| ...-+.+.+|..+..
T Consensus 11 ~~~~~dl~kAe~~y~~al~~~p~~--~~~~~n~a~~L~~~~~~~d~~~Ai~~l~~~l~~~~~p--~~~~~~~~La~~y~~ 86 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH--HHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHH
T ss_conf 528899999999999997419999--9999999999998598778999999999987504799--779999999999998
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 699899999975311464235689999999999988
Q gi|254780421|r 140 TSSYEEISKILQKLSEPSNPMHQFANEILGISALKF 175 (218)
Q Consensus 140 ~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~ 175 (218)
.+++++|+..+.....-+ |-...|+.+++.++-+.
T Consensus 87 ~g~~~~A~~~~~~~L~~~-P~~~~A~~l~~~I~~~~ 121 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTE-PQNNQAKELERLIDKAM 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_conf 399599999999999879-19699999999999998
No 94
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.52 E-value=0.0039 Score=36.43 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=81.2
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH-----------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999511005778999999873126895-----------7899999999996302699899999975311464235
Q gi|254780421|r 92 NMYIASILVAKGDTKNAAEIFLKVANDDLAPL-----------AVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPM 160 (218)
Q Consensus 92 ~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~-----------~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~ 160 (218)
.-..+..++..|++..|+..|...+.-...+. .++..+.+.++..++..+++++|+..+.....-+ |.
T Consensus 150 ~ke~Gn~~f~~g~y~~Ai~~Y~kAl~~~~~~~~~~~~~~~~~~~l~~~~~~Nla~~y~k~~~~~~A~~~~~~al~~~-p~ 228 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN 228 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CC
T ss_conf 99999999985999999999999998574443123466765537899999889999999388899999999987634-12
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 689999999999988998999999999983558998999999999
Q gi|254780421|r 161 HQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMI 205 (218)
Q Consensus 161 ~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~ 205 (218)
...++..+|.++...|++++|+..|++++.-.+....++......
T Consensus 229 n~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 273 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 379999999999986899999999999998499999999999999
No 95
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=0.0041 Score=36.35 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999999841387666999999973125520-69999999999995110057789999998731268957899999999
Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKL-YNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQA 133 (218)
Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~-ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~l 133 (218)
......-..+..+++++|+..|.+.++-.++. -.....+.++.+++..|++++|+..++.++.-.+.. .. +.+++
T Consensus 30 ~l~~~Gn~~f~~~~y~~Ai~~y~kAl~l~~~~~~~~~~~~n~~~~~~~~~~~~~A~~~~~~ai~~~p~~--~~--~~~~l 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VK--ALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HH--HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HH--HHHHH
T ss_conf 999999999996899999999999987454877799999999999998568889999899999878998--99--99999
Q ss_pred HHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 9963026998999999753114
Q gi|254780421|r 134 ASILVDTSSYEEISKILQKLSE 155 (218)
Q Consensus 134 a~~~~~~~~~d~a~~~l~~~~~ 155 (218)
+.++...+++++|+..+.....
T Consensus 106 g~~~~~~~~~~~A~~~~~kal~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999987899999999999998
No 96
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.49 E-value=0.00062 Score=41.41 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114-64235689999999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE-PSNPMHQFANEILG 169 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~-~~~~~~~~a~ellg 169 (218)
+.+.++.++...|++++|+..|+.++.-.+.... +...++.++...+++++|+..+..... ..+|....+...+|
T Consensus 8 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~g~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~a~~~~g 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK----YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999999999969999999999999871955599----999888999985108999999999985499955699999999
Q ss_pred HHHHH-CCCHHHHHHHHHHHHH
Q ss_conf 99998-8998999999999983
Q gi|254780421|r 170 ISALK-FGKVQKAKTIFEELAK 190 (218)
Q Consensus 170 ~~~~~-~Gd~~~A~~~y~~i~~ 190 (218)
.++.. +|+..+|...|.+..-
T Consensus 84 ~~l~~l~~~~~ea~~~~~~aaL 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9999987999999999999756
No 97
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.45 E-value=0.00091 Score=40.37 Aligned_cols=79 Identities=10% Similarity=-0.019 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 66999999973125520699999999999951100577899999987312689578999999999963026998999999
Q gi|254780421|r 70 DDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKI 149 (218)
Q Consensus 70 ~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~ 149 (218)
+.++..|++++...|+. +.+.+.+|.+++..|++++|+..|+..+...+... .+.+.++..+...+++++|+..
T Consensus 2 q~~~e~le~~l~~~pd~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS----VAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCHHHHHHH
T ss_conf 89999999998729998--99999999999985999999999999788743059----9999999999997899999999
Q ss_pred HHHHC
Q ss_conf 75311
Q gi|254780421|r 150 LQKLS 154 (218)
Q Consensus 150 l~~~~ 154 (218)
+....
T Consensus 76 ~~~al 80 (115)
T 2kat_A 76 WESGL 80 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.42 E-value=0.0047 Score=35.99 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC-----HHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642-----3568999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSN-----PMHQFAN 165 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~-----~~~~~a~ 165 (218)
+.+..+......|+.+.|...+...+...+.+. ..+..+.++...++++++...+........ .......
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 289 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMF-----LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999998752308899998888752599689-----999999999987439999999999998673001013108999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999889989999999999835
Q gi|254780421|r 166 EILGISALKFGKVQKAKTIFEELAKD 191 (218)
Q Consensus 166 ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218)
...|..+.+.|+.++|++.|++++..
T Consensus 290 ~~~~~~~~~~~~~~~a~~~~~~a~~~ 315 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIELGNE 315 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999879989999999999774
No 99
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.39 E-value=0.0038 Score=36.50 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCC---CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999630269---989999997531146423568999999999998899899999999998355899
Q gi|254780421|r 129 ATLQAASILVDTS---SYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218)
Q Consensus 129 A~l~la~~~~~~~---~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218)
+++..+..+.... ++++|+..+......+++....++..+|.+|.+.|++++|++.|++++.-.+..
T Consensus 41 ~~f~~a~~~~~s~~~~~~~~Ai~~l~~~l~~~p~~~~~~~y~Lg~~y~~lg~y~~A~~~~~~aL~l~P~n 110 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999859856899999999998721799899999999999999398899999999888349894
No 100
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.36 E-value=0.00073 Score=40.96 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=23.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99984138766699999997312552069999999999995110057789999998731
Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVAND 118 (218)
Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~ 118 (218)
+..+.+.|++++|+..+++.++..|+. .+.+.+.++.++...|++++|+..|+.++.-
T Consensus 7 ~~~L~~qG~~~~Ai~~~~~al~~~P~~-~~~a~~~lG~~~~~~g~~~~Ai~~~~kal~i 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHCHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999999689999999999998728988-9999998570310248799999999999984
No 101
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.26 E-value=0.0081 Score=34.50 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999999999999999841387666999999973125520699999999999951100577899999987312689578
Q gi|254780421|r 46 HEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAV 125 (218)
Q Consensus 46 q~~~~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~ 125 (218)
+..+..+|-..|..++......... ... ... ..-......+.+.+|..++..|++++|+..++.+++-.+.. .
T Consensus 235 k~g~y~~Ai~~Y~kAL~~l~~~~~~--~~~-~~~--~~~~~~~~~~~~Nla~~~~kl~~y~~Ai~~~~kaL~ldp~~--~ 307 (370)
T 1ihg_A 235 KSQNWEMAIKKYTKVLRYVEGSRAA--AED-ADG--AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN--T 307 (370)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHH--SCH-HHH--GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC--H
T ss_pred HCCCHHHHHHHHHHHHHCCHHCCHH--HCC-HHH--HHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--H
T ss_conf 8599999999999999513002100--000-555--54191169999999999998488899999999999849998--9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999996302699899999975311464235689999999999
Q gi|254780421|r 126 RYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISA 172 (218)
Q Consensus 126 ~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~ 172 (218)
+ |.++++..+...+++++|+..+.....-. |-...+...++.+.
T Consensus 308 k--a~~~~g~a~~~lg~~e~A~~~~~kal~l~-P~n~~~~~~l~~~~ 351 (370)
T 1ihg_A 308 K--ALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 351 (370)
T ss_dssp H--HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 9--99999999998699999999999999849-99899999999999
No 102
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.20 E-value=0.0039 Score=36.47 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHH
Q ss_conf 999999963026998999999753114642356899999999999889989999999999835-58998999999
Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRS 202 (218)
Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra 202 (218)
|-+.++.++...+++++|+..+....... |-...+...+|.++...|++++|+..|++++.- ++.+.....++
T Consensus 11 ay~~lg~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~la 84 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999689999999998838607-504677623999999968999999999998475879799999999
No 103
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A*
Probab=97.20 E-value=0.0019 Score=38.46 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHHH
Q ss_conf 99899999975311--464235689999999999988998999999999983-5589989999999
Q gi|254780421|r 141 SSYEEISKILQKLS--EPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRSQ 203 (218)
Q Consensus 141 ~~~d~a~~~l~~~~--~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra~ 203 (218)
+.+++++..+.... .|..|....++-.+|.++.+.|++++|++.|++++. +|.-+..++.+..
T Consensus 252 ~~~~~a~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~~~eA~~~~~kai~ldP~~~~y~~~l~~ 317 (331)
T 3dss_A 252 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 669999999999998688997999999999999986489999999999999879886999999999
No 104
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A*
Probab=97.19 E-value=0.0097 Score=34.00 Aligned_cols=119 Identities=6% Similarity=-0.091 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHH---HHH-----HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 669999999731255206999---999-----999999511005778999999873126895789999999999630269
Q gi|254780421|r 70 DDARSSFEKILSQDNKLYNPL---SNM-----YIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTS 141 (218)
Q Consensus 70 ~~A~~~l~~l~~~~~~~ya~l---A~l-----~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~ 141 (218)
++|+..+++++...|..+..+ +.+ ..+......|.+++|+..+..++...+.+. ......+++.......
T Consensus 47 ~eAl~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCC
T ss_conf 99999999999888887899999999999704333568888789999999999998889989--9999975888760773
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9899999975311464235689999999999988998999999999983
Q gi|254780421|r 142 SYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 142 ~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
+..+++..+......++..........+.+....+....|.+.|++++.
T Consensus 125 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~i~ 173 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 5999999999997248345789988999999742462889999999998
No 105
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.16 E-value=0.0033 Score=36.94 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=75.7
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 41387666999999973125520699999999999951---100577899999987312689578999999999963026
Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVA---KGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218)
Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~---~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218)
++.+++.+|...+++.+...++. .-+.|.+|..+.. .++..+|+..|+..+.....| -..-+.+.++..+...
T Consensus 9 ~~~edl~kAek~Y~~al~~~~~~--~~~~~n~a~~L~~s~~~~~~~~Ai~ll~~~l~~~~~~--~~~~~l~~La~~y~~~ 84 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRL 84 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHC
T ss_conf 58999999999999987109999--9999999999987587778999999999987446994--1999999999999986
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998999999753114642356899999999999
Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQFANEILGISAL 173 (218)
Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~ 173 (218)
+++++|+..++....- .|...-|+.++..+..
T Consensus 85 g~~~~A~~~~~~aL~i-dP~n~qA~~l~~~I~~ 116 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQT-EPQNNQAKELERLIDK 116 (152)
T ss_dssp SCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
T ss_conf 9999999999999976-9398999999999999
No 106
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.00069 Score=41.13 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999999963026998999999753114642356899999999999889989999999999835
Q gi|254780421|r 128 AATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD 191 (218)
Q Consensus 128 lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218)
.+.+.+|.++...+++++|+..+.....-+ |....++..+|.++..+|++++|++.|++++..
T Consensus 8 ~a~~~lg~~~~~~g~~~~A~~~~~~ai~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~y~~al~l 70 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999999999599999999999877449-646999999999999968999999999999864
No 107
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.12 E-value=0.011 Score=33.57 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHH-------HHHCCCCCH
Q ss_conf 999999999511005778999999873126----895789999999999630269989999997-------531146423
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDL----APLAVRYAATLQAASILVDTSSYEEISKIL-------QKLSEPSNP 159 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~----~~~~~~~lA~l~la~~~~~~~~~d~a~~~l-------~~~~~~~~~ 159 (218)
-.+........+|++++|...++..++... .......-..-.++.++...+++++|+..+ .....++.|
T Consensus 311 ~~~e~~~~~~~~~~~~ea~~l~~~~L~~~~~il~~~h~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h~ 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 66787876663367788899999999998750699627789999999999998779889999999999999997699998
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 5689999999999988998999999999983
Q gi|254780421|r 160 MHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 160 ~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
..+..+..+|.++..+|++++|.+.|++++.
T Consensus 391 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kAl~ 421 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999999987898999999999999
No 108
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint center for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.09 E-value=0.0036 Score=36.71 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 876669999999731255-2069999999999995110057789999998731268957899999999996302699899
Q gi|254780421|r 67 NKLDDARSSFEKILSQDN-KLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218)
Q Consensus 67 ~~~~~A~~~l~~l~~~~~-~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218)
|+.++|+..+++.++..+ ++--..+.+.++.++...|++++|+..|+.++...+... .+.+.++..+...+++++
T Consensus 4 G~~~eAi~~y~kAl~~~~~~~~~~~a~~~lg~~y~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~e 79 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ----ALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHCCHHH
T ss_conf 5999999999999835889964999999999999994999999999987785078989----999989999856125999
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999975311464
Q gi|254780421|r 146 ISKILQKLSEPS 157 (218)
Q Consensus 146 a~~~l~~~~~~~ 157 (218)
|+..+.......
T Consensus 80 A~~~~~~~~~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998738
No 109
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, glycoprotein, metal-binding, oxidoreductase, iron, vitamin C, TPR repeat, dioxygenase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.07 E-value=0.0054 Score=35.61 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218)
..|.++..++..|++..|+..|+..+.-.+.++ ...+-....++.+|.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~~~~~Al~~~~~~~--------------------------------~~~~~~~~~l~~lg~ 54 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGE--------------------------------ISTIDKVSVLDYLSY 54 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------------------------------CCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--------------------------------CCCCCHHHHHHHHHH
T ss_conf 999999999996899999999999987543567--------------------------------565529999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 9998899899999999998355899899999999999500340
Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIASD 213 (218)
Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~~~ 213 (218)
.+.+.|++++|++.|++++...+..+............|.-..
T Consensus 55 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~nl~~~~~~l~~~~ 97 (104)
T 2v5f_A 55 AVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEK 97 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9998598379999999999759698999999999999985378
No 110
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle, cell division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.06 E-value=0.0017 Score=38.63 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999998413876669999999731255206999999999999511005778999999873126895789999999
Q gi|254780421|r 53 VGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQ 132 (218)
Q Consensus 53 as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~ 132 (218)
+...+.-+......+++++|+..+++.+.. ..+..+...|++++|+..++..+...+ + .. -+.++
T Consensus 63 ~~~~~~lg~~~~~~~~y~~A~~~~~~al~~-----------~~~~~~~~~~~~~~A~~~~~~al~~~p-~-~~--~~~~~ 127 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQ-----------KKALSKTSKVRPSTGNSASTPQSQCLP-S-EI--EVKYK 127 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHCC--------------------CCC-C-HH--HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHCC-C-CH--HHHHH
T ss_conf 999999999999866799999999999996-----------199999987779999999999987493-5-69--99999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99963026998999999753114642356899999999999
Q gi|254780421|r 133 AASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISAL 173 (218)
Q Consensus 133 la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~ 173 (218)
++.++...+++++|+..++.+.... -.+.....+|.+|.
T Consensus 128 lg~~~~~~g~~~~Ai~~le~i~~~~--~~~~~~~~Lg~lY~ 166 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLYK 166 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHC
T ss_conf 9999998399999999999998628--99799999999868
No 111
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.05 E-value=0.0049 Score=35.83 Aligned_cols=83 Identities=22% Similarity=0.206 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999999511005778999999873126895789999999999630269989999997531146423568999999
Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEIL 168 (218)
Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ell 168 (218)
+-+-+.+|.++...|++++|+..|..++...+... -+...++.++...+++++|+..+.....- .|....++..+
T Consensus 9 a~ay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~P~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
T ss_conf 99999999999996899999999988386075046----77623999999968999999999998475-87979999999
Q ss_pred HHHHHHCC
Q ss_conf 99999889
Q gi|254780421|r 169 GISALKFG 176 (218)
Q Consensus 169 g~~~~~~G 176 (218)
|.++.++|
T Consensus 84 a~~~~~~G 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHCC
T ss_conf 99999767
No 112
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.03 E-value=0.0074 Score=34.73 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 9999963026998999999753114642356899999999999889989999999999835589989999
Q gi|254780421|r 131 LQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218)
Q Consensus 131 l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218)
+..+..++++|++++|+..+.....-++.....+...+|.++.+.|++++|++.|++++.-.+..+....
T Consensus 4 l~~~~~L~~qG~~~~Ai~~~~~al~~~P~~~~~a~~~lG~~~~~~g~~~~Ai~~~~kal~i~P~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 8999999996899999999999987289889999998570310248799999999999984989999999
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.72 E-value=0.025 Score=31.47 Aligned_cols=56 Identities=9% Similarity=-0.042 Sum_probs=24.7
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
Q ss_conf 13876669999999731255206999999999999511005778999999873126
Q gi|254780421|r 65 NSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL 120 (218)
Q Consensus 65 ~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~ 120 (218)
..+..++|+..+++.++..|..+..+.....+-..+.++++.+|+..++.++...+
T Consensus 45 ~~~~~e~Al~~~~~al~~nP~~~~a~~~~~~~~~~l~~~~~~~Al~~~~~~l~~~p 100 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE 100 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 58960999999999998898879999999999998566679999999999998798
No 114
>2hr2_A Hypothetical protein; NP_663012.1, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 2.54A {Chlorobium tepidum tls} SCOP: a.118.8.8
Probab=96.63 E-value=0.029 Score=31.07 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC----------CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC--
Q ss_conf 999999999984138766699999997312552----------06999999999999511005778999999873126--
Q gi|254780421|r 53 VGENFAQALELFNSNKLDDARSSFEKILSQDNK----------LYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL-- 120 (218)
Q Consensus 53 as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~----------~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~-- 120 (218)
+...+..+...+..+++++|+..+++-++-.++ .....+...++.++...|++++|+..++..+.-..
T Consensus 11 a~~~~~~g~~~~~~g~y~eA~~~y~kAl~~~~~~~~~~~~~~~~~~a~~~~n~g~~~~~lg~~~~A~~~~~~al~~~~~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999985999999999999999823410677750237789999999999998086999999999999865531
Q ss_pred ----CC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf ----89-578999999999963026998999999753
Q gi|254780421|r 121 ----AP-LAVRYAATLQAASILVDTSSYEEISKILQK 152 (218)
Q Consensus 121 ----~~-~~~~~lA~l~la~~~~~~~~~d~a~~~l~~ 152 (218)
.+ .....-+.++.+..+...+++++|+..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 127 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 3542216666898887699999865884889999999
No 115
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.62 E-value=0.029 Score=31.07 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=50.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999984138766699999997312552069999999999995110057789999998731268957899999999996
Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASI 136 (218)
Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~ 136 (218)
|..+......+++++|+..+++..+..+.... +...+|.++...|++++|+..|+.+++-.+.+.. ..+-++++..
T Consensus 10 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~g~~~~~~~~~~~A~~~~~~Al~l~~~~~~--~~a~~~~g~~ 85 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESK--YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN--KDVWAAKADA 85 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHH
T ss_conf 99999999969999999999999871955599--9998889999851089999999999854999556--9999999999
Q ss_pred HHC-CCCHHHHHH
Q ss_conf 302-699899999
Q gi|254780421|r 137 LVD-TSSYEEISK 148 (218)
Q Consensus 137 ~~~-~~~~d~a~~ 148 (218)
+.. +++.+++..
T Consensus 86 l~~l~~~~~ea~~ 98 (112)
T 2kck_A 86 LRYIEGKEVEAEI 98 (112)
T ss_dssp HTTCSSCSHHHHH
T ss_pred HHHHCCCHHHHHH
T ss_conf 9998799999999
No 116
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.52 E-value=0.0096 Score=34.03 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 98999999999983558998999999
Q gi|254780421|r 177 KVQKAKTIFEELAKDNNSPFGISTRS 202 (218)
Q Consensus 177 d~~~A~~~y~~i~~~~~~p~~~r~ra 202 (218)
++++|.+.|++++...+.....+...
T Consensus 106 ~~e~A~~~f~kAl~~~P~n~~y~~~L 131 (158)
T 1zu2_A 106 NFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 49999999999997499989999999
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG subunit; TPR, cytochrome C biogenesis, O157:H7 EDL933, lyase; 2.05A {Escherichia coli}
Probab=96.39 E-value=0.014 Score=32.99 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=64.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999841387666999999973125520699999999999951100---5778999999873126895789999999999
Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGD---TKNAAEIFLKVANDDLAPLAVRYAATLQAAS 135 (218)
Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~---~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~ 135 (218)
-+......++++.|+..|++.+.-.+.. ..+.+.+|.+++..++ .+++...+...+...+.+. -+.+.++.
T Consensus 50 Lg~~y~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~a~~l~~~~~~~~~~ea~~~~~~al~~~p~~~----~~~~~lg~ 123 (177)
T 2e2e_A 50 LGEYYLWQNDYSNSLLAYRQALQLRGEN--AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI----TALMLLAS 123 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCH----HHHHHHHH
T ss_conf 9999999699999999999999858632--79998789999986387631246899989987199989----99999999
Q ss_pred HHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 63026998999999753114642
Q gi|254780421|r 136 ILVDTSSYEEISKILQKLSEPSN 158 (218)
Q Consensus 136 ~~~~~~~~d~a~~~l~~~~~~~~ 158 (218)
+++..+++++|+..+......++
T Consensus 124 ~~~~~g~~~~A~~~~~~~l~~~p 146 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99997899999999999986599
No 118
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.34 E-value=0.043 Score=29.99 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=71.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-CHHHH--HHHHHHHHH
Q ss_conf 999984138766699999997312552069999999999995110057789999998731268-95789--999999999
Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLA-PLAVR--YAATLQAAS 135 (218)
Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~-~~~~~--~lA~l~la~ 135 (218)
........+++++|+..+++.++..|+. +.+.+.+|.+++..|++++|+..+..++.-.+. ...+. .-+..+++.
T Consensus 10 ~G~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~nla~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999998689999999999998709998--99998578999881989999997999998692361767899999999999
Q ss_pred HHHCCCCHHHHHHHHHHHC
Q ss_conf 6302699899999975311
Q gi|254780421|r 136 ILVDTSSYEEISKILQKLS 154 (218)
Q Consensus 136 ~~~~~~~~d~a~~~l~~~~ 154 (218)
.+...+++++|+..+....
T Consensus 88 ~~~~~~~~~~A~~~~~~al 106 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHH
T ss_conf 9998199999999999997
No 119
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.29 E-value=0.0032 Score=36.97 Aligned_cols=93 Identities=18% Similarity=0.065 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999995110057789999998731268957899999999996302699899999975311464235689999999999
Q gi|254780421|r 93 MYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISA 172 (218)
Q Consensus 93 l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~ 172 (218)
..++..+...|++++|+..++... + . + +...++..+...++++.|+..+.... -.+.+...+|.++
T Consensus 152 ~~l~~~~~~~~~~~~A~~~~~ka~---~-~---~--~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~l~~~~ 217 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN---S-T---R--TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYY 217 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT---C-H---H--HHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCC---H-H---H--HHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHH
T ss_conf 999999987588899999998632---5-8---9--99999999998430999999888481-----5399999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 988998999999999983558998999
Q gi|254780421|r 173 LKFGKVQKAKTIFEELAKDNNSPFGIS 199 (218)
Q Consensus 173 ~~~Gd~~~A~~~y~~i~~~~~~p~~~r 199 (218)
...|++++|.+.|++++...+....+.
T Consensus 218 ~~~g~~~eAi~~~~~al~~~~~~~~~~ 244 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMF 244 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 986988999999999875170245999
No 120
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.07 E-value=0.059 Score=29.14 Aligned_cols=112 Identities=11% Similarity=-0.030 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999
Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218)
Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218)
+...++......++...+...+...+.. . ..-+.+.++.++...+++++|+..+.....- .|..+.++..+|.
T Consensus 122 ~~~~lg~~~~~~~~~~~a~~~~~~~l~~----~--~~~~~~~LG~l~r~~~~~~~A~~~y~~A~~l-~P~~~~~~~~lg~ 194 (497)
T 1ya0_A 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY----I--CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAI 194 (497)
T ss_dssp ---------------------CCHHHHH----H--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCC----C--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_conf 9986158760287589999999987699----8--8999999999999857999999999999987-8898999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 999889989999999999835589989999999999950
Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANI 209 (218)
Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l 209 (218)
++...|+...|..+|.+.+...++-+.-+......+...
T Consensus 195 l~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T 1ya0_A 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999879999999999999817999889999999999874
No 121
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.06 E-value=0.06 Score=29.11 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=67.4
Q ss_pred HHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 66999999973-125520699999999999951---10057789999998731268957899999999996302699899
Q gi|254780421|r 70 DDARSSFEKIL-SQDNKLYNPLSNMYIASILVA---KGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218)
Q Consensus 70 ~~A~~~l~~l~-~~~~~~ya~lA~l~lA~~~~~---~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218)
.+++..+.+.. .+.+......+.|..|..+.. .++.++|+..|+.++...+.+ .+ -+.+.++..+...+++++
T Consensus 19 ~e~l~~l~~~l~~~~~~~~~~~~~f~~a~~~~~s~~~~~~~~Ai~~l~~~l~~~p~~--~~-~~~y~Lg~~y~~lg~y~~ 95 (144)
T 1y8m_A 19 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RR-ECLYYLTIGCYKLGEYSM 95 (144)
T ss_dssp HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HH-HHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC--HH-HHHHHHHHHHHHCCCHHH
T ss_conf 999999999998654766359999999999998598568999999999987217998--99-999999999999398899
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99997531146423568999999999998
Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGISALK 174 (218)
Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~~~~ 174 (218)
|+..++....-+ |....++.+++.+..+
T Consensus 96 A~~~~~~aL~l~-P~n~~a~~l~~~i~~~ 123 (144)
T 1y8m_A 96 AKRYVDTLFEHE-RNNKQVGALKSMVEDK 123 (144)
T ss_dssp HHHHHHHHHHTC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHHHHHH
T ss_conf 999999888349-8949999999999999
No 122
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.05 E-value=0.061 Score=29.06 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHH----------------HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 9999999999998----------------413876669999999731255206999999999999511005778999999
Q gi|254780421|r 51 NIVGENFAQALEL----------------FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLK 114 (218)
Q Consensus 51 ~~as~~y~~al~~----------------~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~ 114 (218)
+++-..|..++.. ...++.+.+...++..+...+... .......+......|+...+...|..
T Consensus 81 e~a~~i~~ral~~~~~~~~~lw~~~a~~e~~~~~~~~a~~i~~~~l~~~~~~~-~~~w~~y~~~~~~~~~~~~a~~i~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999875998699999999999984999989999999988502347-99999999999981887999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 8731268957899999999996-302699899999975311464235689999999999988998999999999983558
Q gi|254780421|r 115 VANDDLAPLAVRYAATLQAASI-LVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNN 193 (218)
Q Consensus 115 i~~~~~~~~~~~~lA~l~la~~-~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~ 193 (218)
.+...+....+ .+..+.+ ....++.+.+...+...... .|.........+....+.|+.+.||..|++++....
T Consensus 160 al~~~p~~~~~----~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~~~~~~~w~~y~~~~~~~g~~~~AR~~ferai~~~~ 234 (308)
T 2ond_A 160 AREDARTRHHV----YVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHTSTTCCTHH----HHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHCCCCHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99848996199----9999999998568879999999999875-899899999999999988899999999999998089
No 123
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.03 E-value=0.034 Score=30.61 Aligned_cols=63 Identities=10% Similarity=0.145 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 9999999999951100577899999987312689578999999999963026998999999753114
Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE 155 (218)
Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~ 155 (218)
+.+.+.+|.++...|++++|+..|+.++.-.+... -+.+.++.++...+++++|+..+.....
T Consensus 7 ~~a~~~lg~~~~~~g~~~~A~~~~~~ai~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~y~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999995999999999998774496469----9999999999996899999999999986
No 124
>3bee_A Putative YFRE protein; putaive YFRE protein, structural genomics, PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.00 E-value=0.021 Score=31.88 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999996302699-89999997531146423568999999999998899899999999998355899
Q gi|254780421|r 128 AATLQAASILVDTSS-YEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218)
Q Consensus 128 lA~l~la~~~~~~~~-~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218)
++.+-.+..+.+.+. .+++...+.....- .|....++.++|..+...|++++|++.|++++...+..
T Consensus 9 l~~~A~al~~~~~~~~t~ea~~~l~~aL~~-~P~~~~al~~lg~~~~~~g~y~~Ai~~w~~lL~~~p~~ 76 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999999999995998899999999999977-86989999999999998689999999999998428998
No 125
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.91 E-value=0.071 Score=28.68 Aligned_cols=116 Identities=9% Similarity=-0.036 Sum_probs=48.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99841387666999999973125520699999999999951100577899999987312689578999999999963026
Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218)
Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218)
......++.+.|+..+.+... + +-+.-.++..+...|++++|+..+...+...+..... ...+.......+.
T Consensus 185 ~~~~~~~~~~~A~~~~~~~~~-----~-~~~~~~l~~~~~~~g~~~eAi~~~~~al~~~~~~~~~--~~~l~~~~~~~~~ 256 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHIVV-----H-ADELEELINYYQDRGYFEELITMLEAALGLERAHMGM--FTELAILYSKFKP 256 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTTTT-----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH--HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHCCC-----C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHCCH
T ss_conf 999984309999998884815-----3-9999999999998698899999999987517024599--9999999873066
Q ss_pred CCHHHHHHHHHHHCCCCCHHHH-------HHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9989999997531146423568-------9999999999988998999999999
Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQ-------FANEILGISALKFGKVQKAKTIFEE 187 (218)
Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~-------~a~ellg~~~~~~Gd~~~A~~~y~~ 187 (218)
.+..++++.+. ....+... ....-++.+|...|+.++|...+..
T Consensus 257 ~k~~eal~~~~---~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~A~~~~~~ 307 (449)
T 1b89_A 257 QKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999888---6655899989887662899999999985779999998873
No 126
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.87 E-value=0.073 Score=28.57 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 7666999999973125520699999999999951100577899999987312
Q gi|254780421|r 68 KLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD 119 (218)
Q Consensus 68 ~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~ 119 (218)
++++++..+++++...+..|.. ...++.++...|++++|+..+..++...
T Consensus 147 ~~~~al~~~~~~l~~~pk~~~~--~~~~g~~~~~l~~~~~Al~~~~~al~~~ 196 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQPKNYQV--WHHRRVLVEWLRDPSQELEFIADILNQD 196 (382)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 8999999999999878998899--9999999998257999999999998638
No 127
>2pqr_A Mitochondria fission 1 protein; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} PDB: 2pqn_A
Probab=95.85 E-value=0.043 Score=29.98 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=41.7
Q ss_pred HHHHHHHHHHCCCCHH---HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999630269989---999997531146423568999999999998899899999999998355
Q gi|254780421|r 129 ATLQAASILVDTSSYE---EISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN 192 (218)
Q Consensus 129 A~l~la~~~~~~~~~d---~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~ 192 (218)
++++.|..++...+.+ +++..|..+...+....--++..+|..|.+.|++++|+..+++++...
T Consensus 41 ~~F~yA~~L~kS~~~~~~~~gI~lLe~l~~~~p~~~rd~lY~La~~y~~lg~y~~A~~~~~~~L~~~ 107 (129)
T 2pqr_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (129)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHC-----
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 8999999998269799999999999999871996189999999999998257999999999998629
No 128
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, glycoprotein, metal-binding, oxidoreductase, iron, vitamin C, TPR repeat, dioxygenase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.74 E-value=0.018 Score=32.30 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----C-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 999999999984138766699999997312----5-5206999999999999511005778999999873126895
Q gi|254780421|r 53 VGENFAQALELFNSNKLDDARSSFEKILSQ----D-NKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPL 123 (218)
Q Consensus 53 as~~y~~al~~~~~~~~~~A~~~l~~l~~~----~-~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~ 123 (218)
+.+-|.-+....+.++++.|+.-|++-+.. . +..-...+...++..+...|++++|+..++.++.-.+.++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
T ss_conf 9999999999999689999999999998754356756552999999999999985983799999999997596989
No 129
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.48 E-value=0.1 Score=27.66 Aligned_cols=141 Identities=13% Similarity=0.003 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 38766699999997312552069999999999995110057789999998731268957899999999996302699899
Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218)
Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218)
.+..+.+...+++-+...++ ......+..+......|+.+.|...|...+.....+... .-+..+......++.+.
T Consensus 77 ~~~~e~a~~i~~ral~~~~~-~~~~lw~~~a~~e~~~~~~~~a~~i~~~~l~~~~~~~~~---~w~~y~~~~~~~~~~~~ 152 (308)
T 2ond_A 77 KLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL---VYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH---HHHHHHHHHHHHHCHHH
T ss_pred HCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHCCCHHH
T ss_conf 01349999999999987599-869999999999998499998999999998850234799---99999999998188799
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99997531146423568999999999-9988998999999999983558998999999999995003
Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGIS-ALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIA 211 (218)
Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~-~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~ 211 (218)
+...+....... |-........+.+ +...|+.+.|+..|+.++...+.+..+-...-.++...+.
T Consensus 153 a~~i~~~al~~~-p~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~~~~~~~w~~y~~~~~~~g~ 218 (308)
T 2ond_A 153 GRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 218 (308)
T ss_dssp HHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999848-996199999999999856887999999999987589989999999999998889
No 130
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.26 E-value=0.12 Score=27.23 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC----CCCH
Q ss_conf 766699999997312552069999999999995110057789999998731268957899999999996302----6998
Q gi|254780421|r 68 KLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD----TSSY 143 (218)
Q Consensus 68 ~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~----~~~~ 143 (218)
+.++|+.-+++-.+.+++. +.+.++. ....+.++|+..|+..++... +. |.+.++.++.. ..++
T Consensus 10 D~~kA~~~~~kaa~~g~~~----a~~~l~~--~~~~~~~~A~~~~~~aa~~g~-~~-----a~~~lg~~y~~g~~~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF----GCLSLVS--NSQINKQKLFQYLSKACELNS-GN-----GCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT----HHHHHHT--CTTSCHHHHHHHHHHHHHTTC-HH-----HHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHHCCCHH----HHHHHHH--CCCCCHHHHHHHHHHHHHCCC-HH-----HHHHHHHHHHCCCCCCCCH
T ss_conf 8999999999999888899----9999985--667689999999999998889-99-----9999999986687522469
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCC
Q ss_conf 9999997531146423568999999999998----8998999999999983558
Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALK----FGKVQKAKTIFEELAKDNN 193 (218)
Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~----~Gd~~~A~~~y~~i~~~~~ 193 (218)
.++...+......+.+ .+...+|.+|.. ..|..+|.+.|+++.+..+
T Consensus 78 ~~A~~~~~~aa~~g~~---~A~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 128 (138)
T 1klx_A 78 RKAAQYYSKACGLNDQ---DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHTTCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999998770875---89999999998199977489999999999998789
No 131
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.16 E-value=0.13 Score=27.03 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC----CCCH
Q ss_conf 766699999997312552069999999999995110057789999998731268957899999999996302----6998
Q gi|254780421|r 68 KLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD----TSSY 143 (218)
Q Consensus 68 ~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~----~~~~ 143 (218)
+...+...++...+.++.....++.+.. ..-..++.+.|+..|........ + -|.+.++.++.. ..++
T Consensus 232 d~~~A~~~~~~aa~~~~~a~~~l~~~l~--~~~~~~d~~~A~~~~~~aa~~g~--~----~A~~~Lg~~y~~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIAPGYPASWVSLAQLLY--DFPELGDVEQMMKYLDNGRAADQ--P----RAELLLGKLYYEGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHGGGSTHHHHHHHHHHH--HSGGGCCHHHHHHHHHHHHHTTC--H----HHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHCCC--H----HHHHHHHHHHHCCCCCCCCH
T ss_conf 3999999999998059899999999998--67743689999999999987889--9----99999999998599888699
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999997531146423568999999999998----899899999999998355899899999999999
Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALK----FGKVQKAKTIFEELAKDNNSPFGISTRSQMILA 207 (218)
Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~----~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~ 207 (218)
..+...+..-... +| .+...+|.+|.. ..|..+|+..|++++...+ |......+.+...
T Consensus 304 ~~A~~~~~~aa~~-~~---~A~~~Lg~~y~~G~~~~~d~~~A~~~~~~AA~~g~-~~A~~~L~~~y~~ 366 (452)
T 3e4b_A 304 KAAEAHFEKAVGR-EV---AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHHTTTTT-CH---HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCC-CH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHC
T ss_conf 9999999986015-79---99999999998699988889999999999998889-9999999999982
No 132
>3bee_A Putative YFRE protein; putaive YFRE protein, structural genomics, PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.79 E-value=0.16 Score=26.40 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=41.4
Q ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 999999841387-66699999997312552069999999999995110057789999998731268957
Q gi|254780421|r 57 FAQALELFNSNK-LDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLA 124 (218)
Q Consensus 57 y~~al~~~~~~~-~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~ 124 (218)
+.+++...+.+. .+++...+++.+...|+. +-+.+.++-.++..|++++|+..|+.+++..+.++.
T Consensus 12 ~A~al~~~~~~~~t~ea~~~l~~aL~~~P~~--~~al~~lg~~~~~~g~y~~Ai~~w~~lL~~~p~~~~ 78 (93)
T 3bee_A 12 KATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999959988999999999999778698--999999999999868999999999999842899811
No 133
>2pqr_A Mitochondria fission 1 protein; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} PDB: 2pqn_A
Probab=94.58 E-value=0.19 Score=26.08 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=64.5
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 9731255206999999999999511---0057789999998731268957899999999996302699899999975311
Q gi|254780421|r 78 KILSQDNKLYNPLSNMYIASILVAK---GDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLS 154 (218)
Q Consensus 78 ~l~~~~~~~ya~lA~l~lA~~~~~~---g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~ 154 (218)
+...++.+.-.+.++|..|-.++.+ ++..+|+.+|..+....+ ...++ +.+.+|..+...+++++|...+....
T Consensus 28 ~~~~e~~~~~~~q~~F~yA~~L~kS~~~~~~~~gI~lLe~l~~~~p--~~~rd-~lY~La~~y~~lg~y~~A~~~~~~~L 104 (129)
T 2pqr_A 28 QVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRE-CLYYLTIGCYKLGEYSMAKRYVDTLF 104 (129)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--GGHHH-HHHHHHHHHHHTTCHHHHHHHHHC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC--CHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9998608998688899999999826979999999999999987199--61899-99999999998257999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q ss_conf 4642356899999999999
Q gi|254780421|r 155 EPSNPMHQFANEILGISAL 173 (218)
Q Consensus 155 ~~~~~~~~~a~ellg~~~~ 173 (218)
.-+ |-...|+.++..+.-
T Consensus 105 ~~~-P~n~qA~~L~~~ie~ 122 (129)
T 2pqr_A 105 EHE-RNNKQVGALKSMVED 122 (129)
T ss_dssp -------------------
T ss_pred HHC-CCCHHHHHHHHHHHH
T ss_conf 629-897999999999999
No 134
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1
Probab=94.55 E-value=0.16 Score=26.50 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=56.7
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99995110057789999998731268957899999999996302699899999975311464235689999999999988
Q gi|254780421|r 96 ASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKF 175 (218)
Q Consensus 96 A~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~ 175 (218)
++..+.+|++++|++.++..++..+.+. -++..++.++...+++++|+..+.....-. |-.......++.+....
T Consensus 4 ~~~aL~~G~l~eAl~~l~~alr~~P~da----~ar~~L~~lL~~~G~~~~A~~qL~~a~~l~-P~~~~~~~~~~~ll~a~ 78 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_conf 9999987999999999999999789999----999999999998799999999999999879-88689999999999834
Q ss_pred CCHHH
Q ss_conf 99899
Q gi|254780421|r 176 GKVQK 180 (218)
Q Consensus 176 Gd~~~ 180 (218)
+...+
T Consensus 79 ~~r~e 83 (273)
T 1zbp_A 79 QARKD 83 (273)
T ss_dssp HHHHH
T ss_pred CCCHH
T ss_conf 57589
No 135
>3pdn_A SET and MYND domain-containing protein 3; rossmann fold, zinc finger, methyltransferase, transferase, transferase-transferase inhibitor complex; HET: SFG; 1.70A {Homo sapiens} PDB: 3mek_A*
Probab=94.44 E-value=0.2 Score=25.89 Aligned_cols=92 Identities=12% Similarity=-0.001 Sum_probs=51.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHCCCCHHHHHH-------HHHHHCCCCCHHHHHHHHH
Q ss_conf 95110057789999998731268----957899999999996302699899999-------9753114642356899999
Q gi|254780421|r 99 LVAKGDTKNAAEIFLKVANDDLA----PLAVRYAATLQAASILVDTSSYEEISK-------ILQKLSEPSNPMHQFANEI 167 (218)
Q Consensus 99 ~~~~g~~~~A~~~l~~i~~~~~~----~~~~~~lA~l~la~~~~~~~~~d~a~~-------~l~~~~~~~~~~~~~a~el 167 (218)
....++.+++...++.+++.... ......-....++..+...+++++|+. .+........|..+..+..
T Consensus 296 ~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~~~~ 375 (428)
T 3pdn_A 296 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 375 (428)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 43202488999999999999987437543114899999999988630499999999999999998749998999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999988998999999999983
Q gi|254780421|r 168 LGISALKFGKVQKAKTIFEELAK 190 (218)
Q Consensus 168 lg~~~~~~Gd~~~A~~~y~~i~~ 190 (218)
+|.++..+|+..+|...|++++.
T Consensus 376 la~~~~~~g~~~~A~~~~~~a~~ 398 (428)
T 3pdn_A 376 VGKLQLHQGMFPQAMKNLRLAFD 398 (428)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999987899999999999999
No 136
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix- turn-helix, repeat protein; 2.00A {Helicobacter pylori 26695} SCOP: a.118.18.1
Probab=94.20 E-value=0.22 Score=25.57 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=12.4
Q ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHH
Q ss_conf 99999999998----8998999999999983
Q gi|254780421|r 164 ANEILGISALK----FGKVQKAKTIFEELAK 190 (218)
Q Consensus 164 a~ellg~~~~~----~Gd~~~A~~~y~~i~~ 190 (218)
+...+|.++.. ..|.+.|...|+++++
T Consensus 184 A~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 214 (273)
T 1ouv_A 184 GCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999887711788844479998899999998
No 137
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.95 E-value=0.25 Score=25.27 Aligned_cols=78 Identities=12% Similarity=-0.053 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999995110057789999998731268957899999999996302699899999975311464235689999999
Q gi|254780421|r 90 LSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILG 169 (218)
Q Consensus 90 lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg 169 (218)
.+.+.++.++...|++++|+..|+..+.-.+... .+...+|.++...++..+|+..+..-..-..|| ..|..-++
T Consensus 153 ~~~~~LG~l~r~~~~~~~A~~~y~~A~~l~P~~~----~~~~~lg~l~~~~~~~~~A~~~y~ral~~~~~~-~~a~~nL~ 227 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-PAASTNLQ 227 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHHHHHHH
T ss_conf 9999999999985799999999999998788989----999999999998799999999999998179998-89999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780421|r 170 ISA 172 (218)
Q Consensus 170 ~~~ 172 (218)
..+
T Consensus 228 ~~~ 230 (497)
T 1ya0_A 228 KAL 230 (497)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 138
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=92.47 E-value=0.12 Score=27.16 Aligned_cols=34 Identities=21% Similarity=0.021 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4588999999997519999999999999999999
Q gi|254780421|r 8 NSYKGKCKMGKCCYKWIAPLLILMILSLAIWFYL 41 (218)
Q Consensus 8 ~~~~~~~~~~~~~yk~ii~~~i~~i~~~~~~~~~ 41 (218)
++.+=|-+||-.+||+.++.++++++.++.++.|
T Consensus 83 ~A~kL~r~mwwrn~K~~ii~~~v~~i~i~iii~~ 116 (119)
T 2kog_A 83 SAAKLKRKYWWKNLKMMIILGVICAIILIIIIVY 116 (119)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999888
No 139
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, acetylation, cell junction, coiled coil; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=88.40 E-value=0.58 Score=23.03 Aligned_cols=32 Identities=22% Similarity=0.013 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58899999999751999999999999999999
Q gi|254780421|r 9 SYKGKCKMGKCCYKWIAPLLILMILSLAIWFY 40 (218)
Q Consensus 9 ~~~~~~~~~~~~yk~ii~~~i~~i~~~~~~~~ 40 (218)
+.+=|-+||-.+||+.+++++++++.++..+.
T Consensus 56 a~~l~~~~ww~~~K~~~i~~~~~~~~i~~ii~ 87 (91)
T 3hd7_A 56 AAKLKRKYWWKNLKMMIILGVICAIILIIIIV 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999
No 140
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=78.70 E-value=2.5 Score=19.04 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5778999999873126895----789999999999630269989999997531146423568999999999998
Q gi|254780421|r 105 TKNAAEIFLKVANDDLAPL----AVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALK 174 (218)
Q Consensus 105 ~~~A~~~l~~i~~~~~~~~----~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~ 174 (218)
.+-|+..++.+-.+.+.+. ..+.+-+...+.+.+..+.+++|...|..+.++++....+-..++..+-.+
T Consensus 88 LESAl~vw~~I~kE~~~~~~l~e~i~~lik~qAV~VCme~g~FkeA~eil~r~f~~~~~~~~lr~kL~~II~~K 161 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 89999999999985164156789999999999999999806607899999998478998608999999999703
No 141
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.66 E-value=2.7 Score=18.85 Aligned_cols=116 Identities=10% Similarity=-0.003 Sum_probs=80.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCC--------CH----------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999995110057789999998731268--------95----------789999999999630269989999997531
Q gi|254780421|r 92 NMYIASILVAKGDTKNAAEIFLKVANDDLA--------PL----------AVRYAATLQAASILVDTSSYEEISKILQKL 153 (218)
Q Consensus 92 ~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~--------~~----------~~~~lA~l~la~~~~~~~~~d~a~~~l~~~ 153 (218)
....+......++.+.++..|...+.--.. .. .....+...++...+..+++++++..+...
T Consensus 118 l~~~a~~a~~~~~~~~a~~~l~~Al~LyrG~~L~~~~~~~w~~~~r~~l~~~~~~al~~la~~~l~~g~~~~a~~~~~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99988765415997999999999999727876788754027899999999999999999999999869889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------CCCCCHHHHHHHHHHHHH
Q ss_conf 1464235689999999999988998999999999983------558998999999999995
Q gi|254780421|r 154 SEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK------DNNSPFGISTRSQMILAN 208 (218)
Q Consensus 154 ~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~------~~~~p~~~r~ra~~~l~~ 208 (218)
..- .|+.-.++..+..++.+.|+..+|...|+..-. ..++++.+++--+.+|..
T Consensus 198 l~~-dP~~E~~~~~Lm~al~~~G~~~~Al~~Y~~~~~~L~~ELG~~Ps~~l~~L~~~il~~ 257 (388)
T 2ff4_A 198 TFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ 257 (388)
T ss_dssp HHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred HHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 996-848999999999999986999999999999999999962999789999999998458
No 142
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.53 E-value=2.8 Score=18.83 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHH-HHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCC
Q ss_conf 00577899999987312689578----99999999996-30269989999997531146-42356899999999999889
Q gi|254780421|r 103 GDTKNAAEIFLKVANDDLAPLAV----RYAATLQAASI-LVDTSSYEEISKILQKLSEP-SNPMHQFANEILGISALKFG 176 (218)
Q Consensus 103 g~~~~A~~~l~~i~~~~~~~~~~----~~lA~l~la~~-~~~~~~~d~a~~~l~~~~~~-~~~~~~~a~ellg~~~~~~G 176 (218)
++...+..+|+..+..-..+..+ +.+ ++=+.++ +....+.+++...+..+... -++-.+...+.-|..+..+|
T Consensus 51 ~~~~~l~~llER~l~~~~~~~~y~~d~Ryl-klWi~Ya~~~~~~~~~~ar~vy~~~~~~~i~~~~a~~~~~~A~~~e~~~ 129 (202)
T 3esl_A 51 SGQEVLRSTMERCLIYIQDMETYRNDPRFL-KIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ 129 (202)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGTTCHHHH-HHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHCCHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 659999999999998425387650248899-9999999985301524599999999982899860999999999999808
Q ss_pred CHHHHHHHHHHHHHCCCCCH
Q ss_conf 98999999999983558998
Q gi|254780421|r 177 KVQKAKTIFEELAKDNNSPF 196 (218)
Q Consensus 177 d~~~A~~~y~~i~~~~~~p~ 196 (218)
+++.|+++|+..+.....|.
T Consensus 130 ~~~~Ar~Iy~~gi~~~a~P~ 149 (202)
T 3esl_A 130 FFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999987579979
No 143
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=76.51 E-value=0.11 Score=27.38 Aligned_cols=19 Identities=5% Similarity=-0.055 Sum_probs=10.5
Q ss_pred HHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999889989999999
Q gi|254780421|r 167 ILGISALKFGKVQKAKTIF 185 (218)
Q Consensus 167 llg~~~~~~Gd~~~A~~~y 185 (218)
+.+.+|.+.+++++|++.|
T Consensus 459 iAa~lY~k~~r~~~AI~l~ 477 (624)
T 3lvg_A 459 IAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp HHHHHHHTTCHHHHHSSCS
T ss_pred HHHHHHHHCCCHHHHHHHH
T ss_conf 9999998868989999998
No 144
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=68.74 E-value=4.5 Score=17.52 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=12.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999998899899999999998
Q gi|254780421|r 165 NEILGISALKFGKVQKAKTIFEELA 189 (218)
Q Consensus 165 ~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218)
..-+|.++...|+.++|...|+.+.
T Consensus 322 ~YW~aRa~~~~G~~~~A~~~~~~aa 346 (618)
T 1qsa_A 322 RYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9887999986476789999999861
No 145
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=65.63 E-value=5.2 Score=17.14 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=54.8
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH
Q ss_conf 95110057789999998731268957899999999996302699899999975311464235689999999999988998
Q gi|254780421|r 99 LVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKV 178 (218)
Q Consensus 99 ~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~ 178 (218)
...+.-++.++..+.++++|.+.|..+|..|. ++...|. +++.+.... .
T Consensus 6 ~~~e~~~~q~~~~L~~I~~D~sVPRNIRr~a~--------------ea~~~L~---n~~~~~~vR--------------a 54 (89)
T 2qsb_A 6 RVDQNLFNEVMYLLDELSQDITVPKNVRKVAQ--------------DSKAKLS---QENESLDLR--------------C 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHH--------------HHHHHHT---CTTSCHHHH--------------H
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--------------HHHHHHH---CCCCCHHHH--------------H
T ss_conf 84699999999999998548988768999999--------------9999987---788563477--------------9
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999998355899899999999999500
Q gi|254780421|r 179 QKAKTIFEELAKDNNSPFGISTRSQMILANII 210 (218)
Q Consensus 179 ~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~ 210 (218)
..|...++++.+|++.|...|..+=+++..|.
T Consensus 55 a~aIs~LdeIs~DPNmP~h~RT~Iw~ivS~LE 86 (89)
T 2qsb_A 55 ATVLSMLDEMANDPNVPAHGRTDLYTIISKLE 86 (89)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999761399998079989999999985
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646}
Probab=64.30 E-value=5.5 Score=16.98 Aligned_cols=149 Identities=15% Similarity=0.062 Sum_probs=98.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
Q ss_conf 984138766699999997312----5520699999999999951100577899999987312---689578999999999
Q gi|254780421|r 62 ELFNSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD---LAPLAVRYAATLQAA 134 (218)
Q Consensus 62 ~~~~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~---~~~~~~~~lA~l~la 134 (218)
......+.+.+...+..+... ............++..+...++...+...+..++... +....+.....+.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~nl~ 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99854459999999999987511134077898884000112787676899999999999999874752136888998899
Q ss_pred HHHHCCCCHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
Q ss_conf 963026998999999753114-----6423568999999999998899-8999999999983--5589989999999999
Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSE-----PSNPMHQFANEILGISALKFGK-VQKAKTIFEELAK--DNNSPFGISTRSQMIL 206 (218)
Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~-----~~~~~~~~a~ellg~~~~~~Gd-~~~A~~~y~~i~~--~~~~p~~~r~ra~~~l 206 (218)
..+...+++++|...+..... ....+.+.....+|.++...|+ ..+|.+.|+++.. .......+...++..+
T Consensus 204 ~~~~~~~~y~~Al~~~~~ai~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~a~~~~~ka~~i~~~~~~~~~~~~~~~~~ 283 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKI 283 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999856999999999999999877989999999999999999809989999999999999999829989999999999
Q ss_pred HHHC
Q ss_conf 9500
Q gi|254780421|r 207 ANII 210 (218)
Q Consensus 207 ~~l~ 210 (218)
..|.
T Consensus 284 ~~~~ 287 (293)
T 2qfc_A 284 SRLE 287 (293)
T ss_dssp HHC-
T ss_pred HHHH
T ss_conf 9875
No 147
>3kez_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=59.71 E-value=6.6 Score=16.47 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999999995110057789999998731
Q gi|254780421|r 90 LSNMYIASILVAKGDTKNAAEIFLKVAND 118 (218)
Q Consensus 90 lA~l~lA~~~~~~g~~~~A~~~l~~i~~~ 118 (218)
.|...+|++++-.|++++|++..+.++..
T Consensus 197 aA~al~Arv~l~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 197 AAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999999998746899999999999986
No 148
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.86 E-value=6.8 Score=16.38 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999889989999999999
Q gi|254780421|r 163 FANEILGISALKFGKVQKAKTIFEEL 188 (218)
Q Consensus 163 ~a~ellg~~~~~~Gd~~~A~~~y~~i 188 (218)
...+-+++.+++.|.+++|++-++++
T Consensus 16 H~~~RRAEr~l~~grfdEAIeCH~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99988899999858789999999999
No 149
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, protein structure initiative; 1.60A {Bacillus anthracis str} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=57.18 E-value=2.2 Score=19.47 Aligned_cols=42 Identities=7% Similarity=-0.086 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 975199999999999999999999999999999999999999
Q gi|254780421|r 19 CCYKWIAPLLILMILSLAIWFYLFDGSHEKKKNIVGENFAQA 60 (218)
Q Consensus 19 ~~yk~ii~~~i~~i~~~~~~~~~~~~~q~~~~~~as~~y~~a 60 (218)
+.++.|++.++++++++.++..++.++...+..+..+.+.+.
T Consensus 11 ~~~~~il~~i~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 52 (254)
T 1rz2_A 11 IFFQRILTVVFLGTFFYSVYELGDIFMDYYENRKVMAEAQNI 52 (254)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999988
No 150
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=51.38 E-value=9.1 Score=15.63 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=31.7
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 84138766699999997312552069999999999995110057789999998
Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115 (218)
Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i 115 (218)
.++.|+.+.|......+.+ +.-| -.+|...+.+|+++.|...|..+
T Consensus 15 Al~~g~l~~A~~~a~~~~~--~~~W-----~~La~~Al~~g~~~~Ae~~y~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLND--SITW-----ERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHHCC--HHHH-----HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHCCC--HHHH-----HHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9975999999999998388--9999-----99999999879999999999986
No 151
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structural genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=50.88 E-value=9.2 Score=15.58 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 10057789999998731268957899999999996302699899999975311464235689999999999988998999
Q gi|254780421|r 102 KGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKA 181 (218)
Q Consensus 102 ~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A 181 (218)
+.....++..+.++++|.+.|..+|..|. ++...|. +++.+.... ...|
T Consensus 13 ee~i~~~~~~L~~I~~D~sVPRNIRr~a~--------------e~~~~L~---ne~~~~~vR--------------aa~a 61 (94)
T 2qzg_A 13 ADKLKNISSMLEEIVEDTTVPRNIRAAAD--------------NAKNALH---NEEQELIVR--------------SATA 61 (94)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHH--------------HHHHHTT---CTTSCHHHH--------------HHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHH--------------HHHHHHH---CCCCCHHHH--------------HHHH
T ss_conf 99999999999998548988768999999--------------9999987---778455578--------------9999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999983558998999999999995003
Q gi|254780421|r 182 KTIFEELAKDNNSPFGISTRSQMILANIIA 211 (218)
Q Consensus 182 ~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~ 211 (218)
...++++.+|++.|...|..+=+++..|..
T Consensus 62 Is~LDeIs~DPNmP~h~RT~Iw~ivS~LE~ 91 (94)
T 2qzg_A 62 IQYLDDISEDPNMPIHTRTQIWGIVSELET 91 (94)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999997623999980789899999999987
No 152
>3jq1_A SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=49.98 E-value=9.5 Score=15.49 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 99999999999951100577899999987312
Q gi|254780421|r 88 NPLSNMYIASILVAKGDTKNAAEIFLKVANDD 119 (218)
Q Consensus 88 a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~ 119 (218)
...|...+|++++-.+++++|++..+.++...
T Consensus 179 k~aA~al~arvyl~~~~~~~A~~~~~~vi~~~ 210 (481)
T 3jq1_A 179 QGAAYAALGKIYVYEENWQEAINVLEPLTQNP 210 (481)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHGGGGSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999976554799999999998435
No 153
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=49.94 E-value=9.5 Score=15.49 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 9999999999511005778999999873
Q gi|254780421|r 90 LSNMYIASILVAKGDTKNAAEIFLKVAN 117 (218)
Q Consensus 90 lA~l~lA~~~~~~g~~~~A~~~l~~i~~ 117 (218)
.|...+|++++-.+++++|.+..+.+++
T Consensus 203 aa~al~arvyl~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 203 AAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999999999985549999999999997
No 154
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=49.75 E-value=3.9 Score=17.89 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999751999999999999999999999
Q gi|254780421|r 15 KMGKCCYKWIAPLLILMILSLAIWFYLFD 43 (218)
Q Consensus 15 ~~~~~~yk~ii~~~i~~i~~~~~~~~~~~ 43 (218)
.+++...++||++++++++++++..+.+.
T Consensus 7 ~~~~~~l~lvl~g~~~g~~~~~~~~~~~~ 35 (159)
T 2j7a_C 7 RNGPARLKLVLGGATLGVVALATVAFGMK 35 (159)
T ss_dssp -------CCSTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77854114489999999999999999987
No 155
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=46.16 E-value=11 Score=15.12 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 68999999999998899899999999998
Q gi|254780421|r 161 HQFANEILGISALKFGKVQKAKTIFEELA 189 (218)
Q Consensus 161 ~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218)
+..+.-++|.+++-.|+.++|.+...+++
T Consensus 189 k~aA~aLlArv~L~~~~~~~a~~~a~~vi 217 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999864135489999999999
No 156
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens}
Probab=44.36 E-value=12 Score=14.95 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH
Q ss_conf 100577899999987312689578---99999999996302699899999975311464235689999999999988998
Q gi|254780421|r 102 KGDTKNAAEIFLKVANDDLAPLAV---RYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKV 178 (218)
Q Consensus 102 ~g~~~~A~~~l~~i~~~~~~~~~~---~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~ 178 (218)
.|+.......|+..+..-..+..+ ...+++-+-+.-. ..+..+.-..+.... -++-.+.....-|..+..+|++
T Consensus 36 ~~~~~~l~~l~eR~l~~~~~~~~~~~d~RYl~~wi~~~~~-~~~~~~if~~l~~~~--i~~~~a~~~i~yA~~~e~~~~~ 112 (164)
T 2wvi_A 36 GGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRL-CNEPLDMYSYLHNQG--IGVSLAQFYISWAEEYEARENF 112 (164)
T ss_dssp ----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH-CSCHHHHHHHHHHTT--SSTTBHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCH
T ss_conf 8978889999999998655758774389999999999874-110999999999828--7866299999999999984999
Q ss_pred HHHHHHHHHHHHCCCCCHH
Q ss_conf 9999999999835589989
Q gi|254780421|r 179 QKAKTIFEELAKDNNSPFG 197 (218)
Q Consensus 179 ~~A~~~y~~i~~~~~~p~~ 197 (218)
+.|++.|+..+.....|..
T Consensus 113 ~~Ar~Iy~rgl~~~A~P~~ 131 (164)
T 2wvi_A 113 RKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHHHCCCCCHH
T ss_conf 9999999999884699899
No 157
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=41.79 E-value=13 Score=14.70 Aligned_cols=27 Identities=15% Similarity=0.038 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999
Q gi|254780421|r 24 IAPLLILMILSLAIWFYLFDGSHEKKK 50 (218)
Q Consensus 24 ii~~~i~~i~~~~~~~~~~~~~q~~~~ 50 (218)
+++.+|++|+++++.-.|..+.+..+.
T Consensus 7 lVVIaIIgILaaia~P~~~~~~~~a~~ 33 (158)
T 2hi2_A 7 MIVIAIVGILAAVALPAYQDYTARAQV 33 (158)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 158
>3owq_A LIN1025 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.61A {Listeria innocua} PDB: 3nro_A
Probab=34.24 E-value=6.9 Score=16.37 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5889999999975199999999999
Q gi|254780421|r 9 SYKGKCKMGKCCYKWIAPLLILMIL 33 (218)
Q Consensus 9 ~~~~~~~~~~~~yk~ii~~~i~~i~ 33 (218)
..+-|-+.|++..+.+.+.++.+++
T Consensus 8 ~k~kk~~~~~k~~~~~~~~~l~vl~ 32 (321)
T 3owq_A 8 TKQKKPSTFTKVMKIASVTLLGILF 32 (321)
T ss_dssp -------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 3456752168999999999999999
No 159
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.57 E-value=19 Score=13.70 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 778999999873126-8957899999999996302699899999975311464235689999999999
Q gi|254780421|r 106 KNAAEIFLKVANDDL-APLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISA 172 (218)
Q Consensus 106 ~~A~~~l~~i~~~~~-~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~ 172 (218)
+.|+..++.+-...+ .....+.+-+...+.+.+.++.+++|...|..+.++++....+-..++..+-
T Consensus 95 ESAl~v~~~I~~E~d~lhe~i~~lik~qAV~vCme~g~fk~A~eilkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 95 ESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999998614435999999999999999998164578999999985689876489999999987
No 160
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=30.80 E-value=19 Score=13.62 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999
Q gi|254780421|r 24 IAPLLILMILSLAIWFYLFDGSHEKKK 50 (218)
Q Consensus 24 ii~~~i~~i~~~~~~~~~~~~~q~~~~ 50 (218)
+++.+|++|++.++.-.|..+....+.
T Consensus 7 mvViaIigILaaiaiP~~~~~~~~ar~ 33 (144)
T 1oqw_A 7 MIVVAIIGILAAIAIPQYQNYVARSEG 33 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 161
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae YJM789}
Probab=25.86 E-value=23 Score=13.08 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=51.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 41387666999999973125520699999999999951100577899999987312689578999999999963026998
Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSY 143 (218)
Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~ 143 (218)
++.++.++|....+.+ ++ -...- .+|..++..|+++-|...|...- |- ..+. .++.-.++.
T Consensus 663 l~~g~~~~A~~~~~~~----~~-~~~W~--~La~~al~~~~~~~A~~~y~~~~-d~------~~l~-----~l~~~~gd~ 723 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE----SA-EMKWR--ALGDASLQRFNFKLAIEAFTNAH-DL------ESLF-----LLHSSFNNK 723 (814)
T ss_dssp HHHTCHHHHHHHHTTC----CC-HHHHH--HHHHHHHHTTCHHHHHHHHHHHT-CH------HHHH-----HHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHC----CC-HHHHH--HHHHHHHHCCCHHHHHHHHHHHC-CH------HHHH-----HHHHHHCCH
T ss_conf 7719999999999860----87-89999--99999998199899999999844-76------6779-----999850999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999975311464235689999999999988998999999999
Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEE 187 (218)
Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~ 187 (218)
+.. ..+..+....+.+ .+-..+|+..||.++|.+.|.+
T Consensus 724 ~~l-~~la~~a~~~~~~-----~~a~~~~l~~g~~~~ai~~l~~ 761 (814)
T 3mkq_A 724 EGL-VTLAKDAETTGKF-----NLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHH-HHHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHCCCH-----HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999-9999999886987-----8999999884999999999998
No 162
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.54 E-value=28 Score=12.56 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 69999999999995110057789999998
Q gi|254780421|r 87 YNPLSNMYIASILVAKGDTKNAAEIFLKV 115 (218)
Q Consensus 87 ya~lA~l~lA~~~~~~g~~~~A~~~l~~i 115 (218)
..++..+..|--.-..|++++|+..|...
T Consensus 13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~a 41 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEG 41 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999869999999999999
No 163
>2ahm_E Replicase NSP8, replicase polyprotein 1AB, heavy chain; SARS-COV, non-structural protein, super-complex, hexadecamer, viral protein; 2.40A {Sars coronavirus} SCOP: d.302.1.1
Probab=21.39 E-value=16 Score=14.07 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 77899999987312
Q gi|254780421|r 106 KNAAEIFLKVANDD 119 (218)
Q Consensus 106 ~~A~~~l~~i~~~~ 119 (218)
+.|...|+..+++.
T Consensus 21 E~A~~~Ye~a~~~g 34 (203)
T 2ahm_E 21 ATAQEAYEQAVANG 34 (203)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998759
No 164
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=20.37 E-value=17 Score=13.86 Aligned_cols=22 Identities=18% Similarity=-0.031 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999
Q gi|254780421|r 24 IAPLLILMILSLAIWFYLFDGS 45 (218)
Q Consensus 24 ii~~~i~~i~~~~~~~~~~~~~ 45 (218)
|+++++++.+++.+||.|+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (407)
T 3h9i_A 7 IIGSMIAGGIISAAGFTWVAKA 28 (407)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999887431367
Done!