BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780421|ref|YP_003064834.1| hypothetical protein
CLIBASIA_01530 [Candidatus Liberibacter asiaticus str. psy62]
         (218 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780421|ref|YP_003064834.1| hypothetical protein CLIBASIA_01530 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 218

 Score =  443 bits (1139), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MESNNDANSYKGKCKMGKCCYKWIAPLLILMILSLAIWFYLFDGSHEKKKNIVGENFAQA 60
           MESNNDANSYKGKCKMGKCCYKWIAPLLILMILSLAIWFYLFDGSHEKKKNIVGENFAQA
Sbjct: 1   MESNNDANSYKGKCKMGKCCYKWIAPLLILMILSLAIWFYLFDGSHEKKKNIVGENFAQA 60

Query: 61  LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL 120
           LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL
Sbjct: 61  LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL 120

Query: 121 APLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQK 180
           APLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQK
Sbjct: 121 APLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQK 180

Query: 181 AKTIFEELAKDNNSPFGISTRSQMILANIIASDQRNKK 218
           AKTIFEELAKDNNSPFGISTRSQMILANIIASDQRNKK
Sbjct: 181 AKTIFEELAKDNNSPFGISTRSQMILANIIASDQRNKK 218


>gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 332

 Score = 21.9 bits (45), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 4/27 (14%)

Query: 21  YKWIAPLLILMILSLAIWFYLFDGSHE 47
           + W+ PL+I+  L++  W    D +H 
Sbjct: 97  FVWLVPLVIVGFLAVITW----DATHR 119


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.131    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,643
Number of Sequences: 1233
Number of extensions: 4962
Number of successful extensions: 9
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 218
length of database: 328,796
effective HSP length: 70
effective length of query: 148
effective length of database: 242,486
effective search space: 35887928
effective search space used: 35887928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)