Query gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 413
No_of_seqs 150 out of 1826
Neff 4.7
Searched_HMMs 33803
Date Wed Jun 1 13:04:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780423.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1p7l_A S-adenosylmethionine s 100.0 0 0 650.3 16.2 184 121-413 1-184 (185)
2 >2p02_A S-adenosylmethionine s 100.0 0 0 633.7 15.1 177 121-405 1-177 (178)
3 >3iml_A S-adenosylmethionine s 100.0 0 0 629.4 16.8 152 259-413 26-177 (184)
4 >3iml_A S-adenosylmethionine s 100.0 2.2E-39 6.6E-44 270.1 7.2 94 16-131 1-96 (96)
5 >3iml_A S-adenosylmethionine s 100.0 1.2E-38 3.4E-43 265.6 10.6 103 154-258 17-119 (119)
6 >1p7l_A S-adenosylmethionine s 100.0 2.9E-38 8.5E-43 263.1 10.7 103 154-258 11-113 (113)
7 >2p02_A S-adenosylmethionine s 100.0 3.4E-38 1E-42 262.6 9.3 110 147-258 19-133 (133)
8 >1p7l_A S-adenosylmethionine s 100.0 1.4E-33 4.1E-38 233.3 7.3 83 16-120 1-85 (85)
9 >2p02_A S-adenosylmethionine s 100.0 1.5E-33 4.4E-38 233.1 7.3 83 16-120 1-85 (85)
10 >3iml_A S-adenosylmethionine s 95.4 0.091 2.7E-06 31.4 7.5 28 1-28 5-39 (119)
11 >2p02_A S-adenosylmethionine s 80.1 0.61 1.8E-05 26.2 0.9 47 3-56 17-73 (133)
12 >2dt5_A AT-rich DNA-binding pr 72.0 4.8 0.00014 20.5 3.7 53 342-413 25-77 (77)
13 >2vt3_A REX, redox-sensing tra 61.2 5.5 0.00016 20.1 2.2 53 342-413 30-82 (85)
14 >2owo_A DNA ligase; protein/DN 60.7 9.4 0.00028 18.6 3.4 37 166-205 36-76 (180)
15 >2is6_A DNA helicase II; hydro 54.7 13 0.0004 17.6 3.4 72 82-169 7-98 (104)
16 >2w42_A PIWI, putative unchara 54.4 10 0.0003 18.5 2.7 33 146-178 199-231 (251)
17 >1u04_A Argonaute, hypothetica 53.2 9.6 0.00028 18.6 2.4 33 324-357 166-198 (246)
18 >3ho1_A Argonaute; argonaute, 42.7 24 0.0007 16.1 3.5 30 325-357 161-190 (238)
19 >1ghh_A DINI, DNA-damage-induc 39.7 26 0.00078 15.8 5.2 58 157-233 12-71 (81)
20 >1kjn_A MTH0777; hypotethical 36.8 13 0.00038 17.8 0.9 25 145-169 9-33 (157)
21 >2f0c_A Phage TP901-1 ORF49 (B 35.8 26 0.00076 15.8 2.4 23 246-268 86-108 (117)
22 >1b3t_A Protein (nuclear prote 29.7 38 0.0011 14.8 3.5 10 187-196 128-137 (147)
23 >1yvu_A Hypothetical protein A 27.5 18 0.00052 16.9 0.4 35 319-356 153-187 (233)
24 >1zru_A Lactophage P2 receptor 25.9 44 0.0013 14.4 2.3 25 246-270 81-106 (114)
25 >3hol_A TBPB; transferrin rece 24.0 43 0.0013 14.4 1.8 18 142-159 73-90 (259)
26 >1ezw_A Coenzyme F420-dependen 22.9 41 0.0012 14.6 1.5 23 10-32 45-67 (87)
27 >1ns5_A Hypothetical protein Y 22.4 34 0.001 15.1 1.0 11 158-168 125-135 (155)
28 >1uhe_A Aspartate 1-decarboxyl 22.0 52 0.0015 13.9 1.9 28 251-278 38-65 (65)
29 >1bkv_A T3-785; collagen, hydr 22.0 52 0.0016 13.9 2.0 26 259-284 2-27 (30)
30 >1o6d_A Hypothetical UPF0247 p 21.8 36 0.0011 15.0 1.0 11 158-168 124-134 (163)
31 >1mty_D Methane monooxygenase 21.7 41 0.0012 14.5 1.4 37 155-195 45-87 (116)
32 >1vh0_A Hypothetical UPF0247 p 21.5 36 0.0011 14.9 1.0 12 157-168 131-142 (161)
No 1
>>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} (A:99-132,A:233-383)
Probab=100.00 E-value=0 Score=650.34 Aligned_cols=184 Identities=59% Similarity=0.961 Sum_probs=178.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 56777554420353000589862488874206645448757999999999999975203576410011782689999749
Q gi|254780423|r 121 SSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVD 200 (413)
Q Consensus 121 S~dIa~GVd~~~~~~~~~GAGDQGiMFGYAc~ET~~~MPlpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~ 200 (413)
||||+||||... .+++|||||||||||||||||+
T Consensus 1 S~dIa~gv~~~~--~~~~GAGDQGimfGyA~~ET~~-------------------------------------------- 34 (185)
T 1p7l_A 1 SPDINQGVDRAD--PLEQGAGDQGLMFGYATNETDV-------------------------------------------- 34 (185)
T ss_dssp CHHHHHHHSCSS--TTTCCCSSCEEEEEEEETTSTT--------------------------------------------
T ss_pred CHHHHCCCCCCC--CCCCCCCCCCEEEEEECCCCCC--------------------------------------------
T ss_conf 777760355333--1113667641587675279855--------------------------------------------
Q ss_pred CCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 76314545788765067326899999887652012332246885427999178837855873003655561110245776
Q gi|254780423|r 201 NKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGA 280 (413)
Q Consensus 201 ~kP~~i~tVViStQH~~~~~~~~~~~~ii~~vI~~~l~~~~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDtYGg~ 280 (413)
|||.|||||||||||||||||+
T Consensus 35 ----------------------------------------------------------GGP~gD~GlTGRKiivDtYGg~ 56 (185)
T 1p7l_A 35 ----------------------------------------------------------GGPMGDCGLTGRKIIVDTYGGM 56 (185)
T ss_dssp ----------------------------------------------------------CHHHHSCEETTCCTTTTTTTTS
T ss_pred ----------------------------------------------------------CCCCCCCCCCCCCCEECCCCCC
T ss_conf ----------------------------------------------------------7985456777752013255564
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 66777533565744045778889999999997508232211001300583555079998248886898999999997459
Q gi|254780423|r 281 SPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMD 360 (413)
Q Consensus 281 ~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~vqlsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~~fd 360 (413)
++|||||||||||||||||||||||||||||||||||+||+||||||||+++|+||+|+||||+++++++|.++|+++||
T Consensus 57 ~~hGGGAfSGKD~tKVDRSaaY~AR~iAK~iVaagla~~c~vqlsYAIGva~Pvsi~V~tfGT~~~sd~~i~~iI~~~FD 136 (185)
T 1p7l_A 57 ARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFD 136 (185)
T ss_dssp SCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEECTTCCSCSEEEEECTTCBSSCHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 46688646788855333312446778789998648877548986211377787389998468888899999999998079
Q ss_pred CCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99789998608998620210760207898766678954545789999986086
Q gi|254780423|r 361 LSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIGF 413 (413)
Q Consensus 361 l~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~~lk~~~g~ 413 (413)
|||++||++|+|++|||++||+||||||+ +||||++|+++.||+++++
T Consensus 137 lrP~~II~~L~L~~PiY~kTA~YGHFGr~-----df~WEk~d~v~~lk~~~~~ 184 (185)
T 1p7l_A 137 LRPYGLIQMLDLLHPIYKETAAYGHFGRE-----HFPWEKTDKAQLLRDAAGL 184 (185)
T ss_dssp CSHHHHHHHHTCCSSCCGGGGSSCSSSCT-----TSTTTCCSHHHHHHHTSCC
T ss_pred CCHHHHHHHHCCCCCCCHHHCCCCCCCCC-----CCCCCCCHHHHHHHHHCCC
T ss_conf 98899998718999864311575688999-----9881664259999987089
No 2
>>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} (A:115-149,A:254-396)
Probab=100.00 E-value=0 Score=633.74 Aligned_cols=177 Identities=56% Similarity=0.899 Sum_probs=170.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 56777554420353000589862488874206645448757999999999999975203576410011782689999749
Q gi|254780423|r 121 SSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVD 200 (413)
Q Consensus 121 S~dIa~GVd~~~~~~~~~GAGDQGiMFGYAc~ET~~~MPlpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~ 200 (413)
||||+|||+.+. ..+++|||||||||||||||||+
T Consensus 1 S~dI~~gv~~~~-~~~~~gAGDQGimfGyA~~ET~~-------------------------------------------- 35 (178)
T 2p02_A 1 SPDIAQGVHLDR-NEEDIGAGDQGLMFGYATDETEE-------------------------------------------- 35 (178)
T ss_dssp CHHHHHHHTTTC-CGGGCCBSSCEEEEEEEETTSTT--------------------------------------------
T ss_pred CCCCCCCHHCCC-CHHHCCCCCCEEEEEECCCCCCC--------------------------------------------
T ss_conf 764552311256-67550666651686412457654--------------------------------------------
Q ss_pred CCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 76314545788765067326899999887652012332246885427999178837855873003655561110245776
Q gi|254780423|r 201 NKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGA 280 (413)
Q Consensus 201 ~kP~~i~tVViStQH~~~~~~~~~~~~ii~~vI~~~l~~~~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDtYGg~ 280 (413)
|||.|||||||||||||||||+
T Consensus 36 ----------------------------------------------------------GGP~gD~GlTGRKiivDtYGg~ 57 (178)
T 2p02_A 36 ----------------------------------------------------------GGPQGDAGLTGRKIIVDTYGGW 57 (178)
T ss_dssp ----------------------------------------------------------CGGGTSCEETTSCTTTTTTTTS
T ss_pred ----------------------------------------------------------CCCCCCCCCCCCEEEEECCCCC
T ss_conf ----------------------------------------------------------6865455643330211035664
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 66777533565744045778889999999997508232211001300583555079998248886898999999997459
Q gi|254780423|r 281 SPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMD 360 (413)
Q Consensus 281 ~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~vqlsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~~fd 360 (413)
++|||||||||||||||||||||||||||||||||||+||+||||||||+++|+||+||||||+++++++|.++|+++||
T Consensus 58 ~~hGGGAfSGKD~tKvDRsaaY~AR~iAKniVaagla~~c~vqlsyaIGva~Pvsi~VdtfGT~~v~d~~I~~~V~~~FD 137 (178)
T 2p02_A 58 GAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFD 137 (178)
T ss_dssp SCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEEEECTTCCSSCHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 35688767667865212352057777568775127776327865131377887089998268876789999999997579
Q ss_pred CCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 997899986089986202107602078987666789545457899
Q gi|254780423|r 361 LSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIE 405 (413)
Q Consensus 361 l~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~ 405 (413)
|||++||++|+|++|||++||+||||||+ +||||++|+++
T Consensus 138 lrP~~II~~L~L~~PiY~kTA~YGHFGR~-----df~WEk~dkv~ 177 (178)
T 2p02_A 138 LRPGVIVRDLDLKKPIYQRTAAYGHFGRD-----SFPWEVPKKLK 177 (178)
T ss_dssp CCHHHHHHHHTTTSSCGGGGSSSCSSSST-----TCGGGSCCCCC
T ss_pred CCHHHHHHHCCCCCCCCHHHCCCCCCCCC-----CCCCCCCCCCC
T ss_conf 98899998638999865533575688999-----99835746778
No 3
>>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP- binding, cobalt, cytoplasm, magnesium, metal-binding, nucleotide-binding; 2.35A {Burkholderia pseudomallei} (A:116-140,A:241-399)
Probab=100.00 E-value=0 Score=629.35 Aligned_cols=152 Identities=59% Similarity=0.982 Sum_probs=149.3
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCEEEEE
Q ss_conf 58730036555611102457766677753356574404577888999999999750823221100130058355507999
Q gi|254780423|r 259 GGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFV 338 (413)
Q Consensus 259 GGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~vqlsYaIG~~~P~si~V 338 (413)
|||.|||||||||||||||||+++|||||||||||||||||||||||||||||||||||+||+||||||||+++|+||+|
T Consensus 26 GGP~~D~GlTGRKiivDtYGg~~~hGGGafSgKDptKVDRSaaY~AR~iAKniVaagla~~c~vqlsyaIG~a~Pvsi~V 105 (184)
T 3iml_A 26 GGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMV 105 (184)
T ss_dssp CGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCSSCSEEEE
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEE
T ss_conf 57754567555402110146642468766667884643344101677757999984466502887741257778618999
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 824888689899999999745999789998608998620210760207898766678954545789999986086
Q gi|254780423|r 339 DLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIGF 413 (413)
Q Consensus 339 ~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~~lk~~~g~ 413 (413)
+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+ |.+||||++|+++.||+++++
T Consensus 106 dtfGT~k~~d~~L~~iI~~~FDlrP~~II~~L~LrrPiY~kTA~YGHFGR~---d~~fpWEk~d~v~~Lk~~~~~ 177 (184)
T 3iml_A 106 NTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGRE---EPEFSWEAADKALALAEAAGV 177 (184)
T ss_dssp ECTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSSCCGGGGSSCSSSCC---CTTCGGGCCTTHHHHHHHHTC
T ss_pred EECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCC---CCCCCCCCCHHHHHHHHHCCC
T ss_conf 856887779999999999707998899998629999865310674688999---999885454179999997499
No 4
>>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP- binding, cobalt, cytoplasm, magnesium, metal-binding, nucleotide-binding; 2.35A {Burkholderia pseudomallei} (A:20-115)
Probab=100.00 E-value=2.2e-39 Score=270.11 Aligned_cols=94 Identities=39% Similarity=0.649 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHH
Q ss_conf 83168988688999999863601235666760599993149849998785246555543344542001677899999999
Q gi|254780423|r 16 HPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSV 95 (413)
Q Consensus 16 HPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~~~v~~~di~~ivR~~ 95 (413)
|||||||||||||||+||+|||+| ||||||++++|+|+|+|||++++.+ ||++|||++
T Consensus 1 HPDKicDqISDaILD~~L~~Dp~a-------rVA~Et~~~~~~V~i~GEi~~~~~v---------------d~~~ivR~~ 58 (96)
T 3iml_A 1 HPDKVADQISDAILDAILAQDKYS-------RVAAETLCNTGLVVLAGEITTTANI---------------DYIQIARDT 58 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEECSSEEEEEEEEECSCCC---------------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCEEEEEEEECCCCCC---------------CHHHHHHHH
T ss_conf 961899988899999999759998-------6799988647989999998358767---------------799999999
Q ss_pred HHCCCCCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHC
Q ss_conf 840858701--257332210003333456777554420
Q gi|254780423|r 96 IRSIGYEQE--GFHWETVDVEVLLHSQSSDIAYGVDNA 131 (413)
Q Consensus 96 i~~IGY~~~--gfd~~~~~v~~~i~~QS~dIa~GVd~~ 131 (413)
|++|||+++ ||||++|+|++.|++|||||+|||+++
T Consensus 59 i~~IGY~~~~~gfd~~t~~v~~~i~~QS~DIa~gV~~~ 96 (96)
T 3iml_A 59 IKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRA 96 (96)
T ss_dssp HHHHTCC---------CCEEEEEEEEECC---------
T ss_pred HHHHHCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 99751561422988676248887413565433223223
No 5
>>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP- binding, cobalt, cytoplasm, magnesium, metal-binding, nucleotide-binding; 2.35A {Burkholderia pseudomallei} (A:1-19,A:141-240)
Probab=100.00 E-value=1.2e-38 Score=265.58 Aligned_cols=103 Identities=39% Similarity=0.579 Sum_probs=96.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 45448757999999999999975203576410011782689999749763145457887650673268999998876520
Q gi|254780423|r 154 TADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYI 233 (413)
Q Consensus 154 T~~~MPlpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViStQH~~~~~~~~~~~~ii~~vI 233 (413)
.+.||||||+|||+|+|+|+++||+ |.+|||||||||||||+|+|++|+||+|||+|+||++.....+.+++++++||
T Consensus 17 ~~~lMPlpi~lAh~L~~~l~~~RK~--g~~~~LrPD~KsQVTveY~~~kPvrI~tIVvStQH~~~i~~~~lr~~I~e~VI 94 (119)
T 3iml_A 17 SEGLMPLPIHLSHRLVERQANLRRD--GRLPWLRPDAKSQVTVRYVDGKPHSIDTVVLSTQHAPEIDLPALREAVIEEVI 94 (119)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 8996676999999999999999743--89875456776379999768940058889861357765699999999999873
Q ss_pred CCCCCCCCCCCCCEEEEECCCCEEE
Q ss_conf 1233224688542799917883785
Q gi|254780423|r 234 LKALEDIKISPDCSWYINPAGKFVI 258 (413)
Q Consensus 234 ~~~l~~~~l~~~t~~~INPtG~Fvi 258 (413)
++++|+.+++++|+|||||||||||
T Consensus 95 ~~vip~~~ld~~t~~~INPtGrFVI 119 (119)
T 3iml_A 95 KPTLPADLIKGDIKFLVNPTGRFVI 119 (119)
T ss_dssp TTTSCGGGCCTTCEEEESTTCCCCS
T ss_pred HHHHHHHCCCCCCEEEECCCCCEEE
T ss_conf 6651010278452899827897775
No 6
>>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} (A:1-13,A:133-232)
Probab=100.00 E-value=2.9e-38 Score=263.07 Aligned_cols=103 Identities=41% Similarity=0.657 Sum_probs=95.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 45448757999999999999975203576410011782689999749763145457887650673268999998876520
Q gi|254780423|r 154 TADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYI 233 (413)
Q Consensus 154 T~~~MPlpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViStQH~~~~~~~~~~~~ii~~vI 233 (413)
.+.||||||+|||+|+++|+++||+ |.++||||||||||||+|+|++|++|+|||+|+||++.....+.+++++++||
T Consensus 11 ~~~~MPlpi~lAh~l~~~l~~~Rk~--g~~~~L~PD~KsQVTveY~~~kPvrI~tIVvS~QH~~~v~~~~lr~~I~e~Vi 88 (113)
T 1p7l_A 11 SEGLMPAPITYAHRLVQRQAEVRKN--GTLPWLRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEII 88 (113)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 8996781599999999999999974--99876489872379997058751689889983367765599999999998787
Q ss_pred CCCCCCCCCCCCCEEEEECCCCEEE
Q ss_conf 1233224688542799917883785
Q gi|254780423|r 234 LKALEDIKISPDCSWYINPAGKFVI 258 (413)
Q Consensus 234 ~~~l~~~~l~~~t~~~INPtG~Fvi 258 (413)
++++|+++++++|+|+|||||||||
T Consensus 89 ~~vlp~~~l~~~t~~~INPTGrFVI 113 (113)
T 1p7l_A 89 KPILPAEWLTSATKFFINPTGRFVI 113 (113)
T ss_dssp TTTSCGGGCCTTCEEEESTTSCCCS
T ss_pred HHHCCCCCCCCCCEEEECCCCCEEE
T ss_conf 9854711278564798658898664
No 7
>>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} (A:1-29,A:150-253)
Probab=100.00 E-value=3.4e-38 Score=262.59 Aligned_cols=110 Identities=30% Similarity=0.486 Sum_probs=97.1
Q ss_pred EEEEECC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCC----CCEEEEEEEEEEEECCCCCC
Q ss_conf 8742066-454487579999999999999752035764100117826899997497----63145457887650673268
Q gi|254780423|r 147 FGYACRE-TADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDN----KVCEVKSIVLSIQHFDPTWD 221 (413)
Q Consensus 147 FGYAc~E-T~~~MPlpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~----kP~~i~tVViStQH~~~~~~ 221 (413)
|=|.... -+.||||||+|||+|++||+++||+ +.+|||||||||||||+|+++ +|+||+|||||+||++....
T Consensus 19 ~~~~~~~~~~~lMPlpi~lAHrL~krL~~~RK~--g~l~~LrPD~KSQVTVeY~~~~~~~~P~rI~tIVVStQH~e~i~~ 96 (133)
T 2p02_A 19 FLFTSESVGEGCMPLTIVLAHKLNAKLAELRRN--GTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCL 96 (133)
T ss_dssp EEEEEEEECTTSSCHHHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSSCCH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCH
T ss_conf 489846778996771899999999999999972--999755888744899998627885478999898850333666799
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEE
Q ss_conf 9999988765201233224688542799917883785
Q gi|254780423|r 222 RGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFVI 258 (413)
Q Consensus 222 ~~~~~~ii~~vI~~~l~~~~l~~~t~~~INPtG~Fvi 258 (413)
.+.+++++++||.+++|+.+++++|+|+|||||||||
T Consensus 97 e~lr~~I~e~VI~~vlp~~~ld~~t~~~INPTGrFVI 133 (133)
T 2p02_A 97 DEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVI 133 (133)
T ss_dssp HHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCCS
T ss_pred HHHHHHHHHHEEHHHCCHHCCCCCCEEEECCCCCEEE
T ss_conf 9999887665205327310069763698648886476
No 8
>>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} (A:14-98)
Probab=100.00 E-value=1.4e-33 Score=233.34 Aligned_cols=83 Identities=36% Similarity=0.641 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHH
Q ss_conf 83168988688999999863601235666760599993149849998785246555543344542001677899999999
Q gi|254780423|r 16 HPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSV 95 (413)
Q Consensus 16 HPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~~~v~~~di~~ivR~~ 95 (413)
|||||||||||||||+||+|||+| ||||||++++|+|+|+|||++++.+ ||++|||++
T Consensus 1 HPDKicDqISDaILD~~L~~Dp~s-------rvA~Et~~~~~~v~v~GEi~t~~~~---------------d~~~ivR~~ 58 (85)
T 1p7l_A 1 HPDKIADQISDAVLDAILEQDPKA-------RVACETYVKTGMVLVGGEITTSAWV---------------DIEEITRNT 58 (85)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEEETTEEEEEEEEECSCCC---------------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCEEEEEEEECCCCCC---------------CHHHHHHHH
T ss_conf 971899988889999999649998-------6799988747989999998578668---------------789999999
Q ss_pred HHCCCCCCC--CCCCCCCCEEEHHHHH
Q ss_conf 840858701--2573322100033334
Q gi|254780423|r 96 IRSIGYEQE--GFHWETVDVEVLLHSQ 120 (413)
Q Consensus 96 i~~IGY~~~--gfd~~~~~v~~~i~~Q 120 (413)
|++|||++. ||||++|.|++.|++|
T Consensus 59 I~~IGY~~~~~gFd~~t~~V~~~i~~Q 85 (85)
T 1p7l_A 59 VREIGYVHSDMGFDANSCAVLSAIGKQ 85 (85)
T ss_dssp HHHHTCEEGGGTEETTTSEEEEEEECC
T ss_pred HHHHHCCCHHCCCCCCCEEEEEEECCC
T ss_conf 999712601049877714899930378
No 9
>>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} (A:30-114)
Probab=100.00 E-value=1.5e-33 Score=233.12 Aligned_cols=83 Identities=39% Similarity=0.784 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHH
Q ss_conf 83168988688999999863601235666760599993149849998785246555543344542001677899999999
Q gi|254780423|r 16 HPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSV 95 (413)
Q Consensus 16 HPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~~~v~~~di~~ivR~~ 95 (413)
|||||||||||||||+||+|||+| ||||||++++|+|+|+|||++++.+ ||++|||++
T Consensus 1 HPDKicDqISDaILD~~L~~Dp~s-------rVA~Et~~~~~~V~i~GEi~t~~~v---------------d~~~ivR~~ 58 (85)
T 2p02_A 1 HPDKICDQISDAVLDAHLQQDPDA-------KVACETVAKTGMILLAGEITSRAAV---------------DYQKVVREA 58 (85)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEEETTEEEEEEEEECSCCC---------------CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCEEEEEEEECCCCCC---------------CHHHHHHHH
T ss_conf 961898888879999999659998-------4899988607979999997778768---------------789999999
Q ss_pred HHCCCCCCC--CCCCCCCCEEEHHHHH
Q ss_conf 840858701--2573322100033334
Q gi|254780423|r 96 IRSIGYEQE--GFHWETVDVEVLLHSQ 120 (413)
Q Consensus 96 i~~IGY~~~--gfd~~~~~v~~~i~~Q 120 (413)
+++|||+++ ||||++|.|++.|++|
T Consensus 59 i~~IGY~~~~~gfd~~t~~v~~~i~~Q 85 (85)
T 2p02_A 59 VKHIGYDDSSKGFDYKTCNVLVALEQQ 85 (85)
T ss_dssp HHHHTCEEGGGTEETTTSEEEEEEECC
T ss_pred HHHHCCCCHHCCCCCCCCEEEEEEECC
T ss_conf 998541602238454351799964036
No 10
>>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP- binding, cobalt, cytoplasm, magnesium, metal-binding, nucleotide-binding; 2.35A {Burkholderia pseudomallei} (A:1-19,A:141-240)
Probab=95.37 E-value=0.091 Score=31.42 Aligned_cols=28 Identities=50% Similarity=0.802 Sum_probs=20.8
Q ss_pred CCCCCEEEEECCCCCC-C------HHHHHHHHHHH
Q ss_conf 9987306730088788-3------16898868899
Q gi|254780423|r 1 MSADFLFTSESVSEGH-P------DKICDRISDEI 28 (413)
Q Consensus 1 M~~~~lFTSESVs~GH-P------DKicDqISDaI 28 (413)
|..+|||||||||||= | -||+.+++++-
T Consensus 5 ~~~~~~~~~~~~~~~lMPlpi~lAh~L~~~l~~~R 39 (119)
T 3iml_A 5 MANDYLFTSESVSEGLMPLPIHLSHRLVERQANLR 39 (119)
T ss_dssp CCCEEEEEEEEECTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 66786587056789966769999999999999997
No 11
>>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} (A:1-29,A:150-253)
Probab=80.06 E-value=0.61 Score=26.16 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCCC---C----HHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCEEEEEECCC
Q ss_conf 87306730088788---3----1689886889999---99863601235666760599993149
Q gi|254780423|r 3 ADFLFTSESVSEGH---P----DKICDRISDEIVD---LVYREAIESKMDVNSVRVACEVLVTK 56 (413)
Q Consensus 3 ~~~lFTSESVs~GH---P----DKicDqISDaILD---~~L~~Dp~sk~~~~~~RVA~Et~v~~ 56 (413)
..||||||||.+|= | -+|+.+++++-.+ .+|+-|-+| -|-+|=-=.+
T Consensus 17 ~~~~~~~~~~~~~lMPlpi~lAHrL~krL~~~RK~g~l~~LrPD~KS-------QVTVeY~~~~ 73 (133)
T 2p02_A 17 GTFLFTSESVGEGCMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKT-------QVTVQYMQDR 73 (133)
T ss_dssp CEEEEEEEEECTTSSCHHHHHHHHHHHHHHHHHHTTSSTTEEEEEEE-------EEEEEEEEET
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE-------EEEEEEECCC
T ss_conf 82489846778996771899999999999999972999755888744-------8999986278
No 12
>>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, thermus themophilus; HET: NAD; 2.16A {Thermus thermophilus HB8} (A:1-77)
Probab=72.03 E-value=4.8 Score=20.47 Aligned_cols=53 Identities=15% Similarity=0.336 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 888689899999999745999789998608998620210760207898766678954545789999986086
Q gi|254780423|r 342 DSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIGF 413 (413)
Q Consensus 342 gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~~lk~~~g~ 413 (413)
|...++-.+|.+ ...++|.-|.+.|.. +|+||+. .+-+.--++.+.|++.+||
T Consensus 25 g~~~iSS~eLa~----~~gi~~~qVRKDls~----------fg~~G~~-----gvGY~V~~L~~~i~~iLGl 77 (77)
T 2dt5_A 25 GVHRTSSEQLGG----LAQVTAFQVRKDLSY----------FGSYGTR-----GVGYTVPVLKRELRHILGL 77 (77)
T ss_dssp TCCEECHHHHHH----HHTSCHHHHHHHHHH----------TTCCCCT-----TTCEEHHHHHHHHHHHHTT
T ss_pred CCEEEEHHHHHH----HHCCCHHHHHHHHHH----------HHHHHCC-----EEEEEHHHHHHHHHHHCCC
T ss_conf 886985999999----968868875345999----------9997424-----0316899999999998199
No 13
>>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* (A:1-85)
Probab=61.23 E-value=5.5 Score=20.13 Aligned_cols=53 Identities=15% Similarity=0.349 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 888689899999999745999789998608998620210760207898766678954545789999986086
Q gi|254780423|r 342 DSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIGF 413 (413)
Q Consensus 342 gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~~lk~~~g~ 413 (413)
|...++-.+|. +...++|.-|.+.|.. +|+||+. .+-+.--++.+.|.+.+|+
T Consensus 30 g~~~iSS~~La----~~~gi~~~qVRKDls~----------~G~~G~~-----g~GY~V~~L~~~i~~iLG~ 82 (85)
T 2vt3_A 30 GKQRVSSAELS----DAVKVDSATIRRDFSY----------FGALGKK-----GYGYNVDYLLSFFRKTLDQ 82 (85)
T ss_dssp TCCEECHHHHH----HHHCCCHHHHHHHHHH----------TTCCC----------EEHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHH----HHHCCCHHHHHCCHHH----------HHHHHCC-----CCCCCHHHHHHHHHHHHCC
T ss_conf 98799799999----9868755675441877----------3021226-----0240799999999998399
No 14
>>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:1-60,A:117-236)
Probab=60.67 E-value=9.4 Score=18.63 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCEE----EEEEECCCCCEE
Q ss_conf 9999999997520357641001178268----999974976314
Q gi|254780423|r 166 HRILRTLADARKNSGGDVSKLGPDAKSQ----VTIRYVDNKVCE 205 (413)
Q Consensus 166 h~L~krL~~~Rk~~~g~~~~L~PDgKsQ----VTveY~~~kP~~ 205 (413)
-+|.++|.++-+..+ .+..||+-|| |++.|++|+-++
T Consensus 36 D~l~~eL~~LE~~~P---~l~~~dSPTqDG~ai~L~Ye~G~Lv~ 76 (180)
T 2owo_A 36 DRLMRELRELETKHP---ELITPDSPTQDGLAVSILYENGVLVS 76 (180)
T ss_dssp HHHHHHHHHHHHHCT---TSCCTTSGGGSSEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHCC---CCCCCCCCCCCEEEEEEEEECCEEEE
T ss_conf 999999999998681---44689999665379999998999989
No 15
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:107-188,A:525-546)
Probab=54.70 E-value=13 Score=17.63 Aligned_cols=72 Identities=15% Similarity=0.371 Sum_probs=42.6
Q ss_pred ECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHH--------------------HHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 0167789999999984085870125733221000333--------------------34567775544203530005898
Q gi|254780423|r 82 VVDKEKFEKVVRSVIRSIGYEQEGFHWETVDVEVLLH--------------------SQSSDIAYGVDNASDDCSTLGAG 141 (413)
Q Consensus 82 ~v~~~di~~ivR~~i~~IGY~~~gfd~~~~~v~~~i~--------------------~QS~dIa~GVd~~~~~~~~~GAG 141 (413)
.+|..|-..++++++++.|.+...|..+++ +..|. ++-.+|..--. ....+.++=
T Consensus 7 I~D~~Dq~~llk~ilkel~l~~~~~~~~~i--l~~IS~~Kn~~~~p~~~~~~~~~~~~~~a~IY~~Ye---~~L~~~n~l 81 (104)
T 2is6_A 7 ILDSEDQLRLLKRLIKAMNLDEKQWPPRQA--MWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQ---EACDRAGLV 81 (104)
T ss_dssp EECHHHHHHHHHHHHHHTTCCTTTSCHHHH--HHHHHHHHHTTCCTTTCCCSSCHHHHHHHHHHHHHH---HHHHHHTEE
T ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCHHHH--HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH---HHHHHCCCC
T ss_conf 737999999999999980887110348999--999876554037868888734789999999999999---999984994
Q ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 6248887420664544875799999999
Q gi|254780423|r 142 DQGIMFGYACRETADFMPAPIYYAHRIL 169 (413)
Q Consensus 142 DQGiMFGYAc~ET~~~MPlpi~lAh~L~ 169 (413)
| .+.+||+.-+|+|.-+
T Consensus 82 D-----------~~~~~~~~~~~~~~~~ 98 (104)
T 2is6_A 82 D-----------DEDLMPLQAFLSHAAL 98 (104)
T ss_dssp E-----------C--CCHHHHHHHHHHH
T ss_pred C-----------CCHHHHHHHHHHHHHH
T ss_conf 3-----------1000479999998764
No 16
>>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A (A:177-427)
Probab=54.42 E-value=10 Score=18.45 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=24.8
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 887420664544875799999999999997520
Q gi|254780423|r 146 MFGYACRETADFMPAPIYYAHRILRTLADARKN 178 (413)
Q Consensus 146 MFGYAc~ET~~~MPlpi~lAh~L~krL~~~Rk~ 178 (413)
.|.|.-.-.+.-+|+|+.+||+|++++......
T Consensus 199 ~~~~~~~~~~~~lPapi~yA~~la~~~~~~~~~ 231 (251)
T 2w42_A 199 SKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRY 231 (251)
T ss_dssp HTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 413106688884170348899999999874345
No 17
>>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H, hydrolase/gene regulation complex; 2.25A {Pyrococcus furiosus dsm 3638} (A:1-9,A:313-328,A:551-771)
Probab=53.24 E-value=9.6 Score=18.58 Aligned_cols=33 Identities=9% Similarity=-0.121 Sum_probs=19.5
Q ss_pred EEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 1300583555079998248886898999999997
Q gi|254780423|r 324 LSYAIGISRPLSIFVDLHDSGKVSESCVANAINK 357 (413)
Q Consensus 324 lsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~ 357 (413)
-.-++|.++|+.+.|- +.++..+.+.|.+.+-.
T Consensus 166 ~~~~~gt~~P~~y~v~-~d~~~~~~~~l~~~t~~ 198 (246)
T 1u04_A 166 TPIPIKLAKKRIIKNG-KVEKQSITRQDVLDIFI 198 (246)
T ss_dssp CCCCEEEEEEEEEETT-EEEECCCCHHHHHHHHH
T ss_pred ECCEEEEEEECCCCCC-CCCCCCCHHHHHHHHHH
T ss_conf 1718999985253356-66789797999999999
No 18
>>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, plasmid; 2.60A {Thermus thermophilus HB27} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A (A:1-12,A:309-318,A:470-685)
Probab=42.73 E-value=24 Score=16.10 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=15.7
Q ss_pred EECCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 300583555079998248886898999999997
Q gi|254780423|r 325 SYAIGISRPLSIFVDLHDSGKVSESCVANAINK 357 (413)
Q Consensus 325 sYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~ 357 (413)
..-.|.++|+.+.|.- +..+.+.|.+.+-.
T Consensus 161 ~~~~Gt~~P~~y~v~~---~~~~~~~l~~~~~~ 190 (238)
T 3ho1_A 161 RDFRGTPRPLKLVHEA---GDTPLEALAHQIFH 190 (238)
T ss_dssp CCSSSCCCCEEEEEEE---ECSCHHHHHHHHHH
T ss_pred CCCEECCCCEEEEEEC---CCCCHHHHHHHHHH
T ss_conf 2875348877999908---99998999999999
No 19
>>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} (A:)
Probab=39.65 E-value=26 Score=15.80 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=34.0
Q ss_pred CCCHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 48757--999999999999975203576410011782689999749763145457887650673268999998876520
Q gi|254780423|r 157 FMPAP--IYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYI 233 (413)
Q Consensus 157 ~MPlp--i~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViStQH~~~~~~~~~~~~ii~~vI 233 (413)
.||.. -.|...|.|||.. .-||++++|+|.|-....+ |+-.. .....+.+..+++++-
T Consensus 12 ~lp~ga~~aL~~EL~kRi~~-----------~yPd~~~~v~Vr~~s~n~l-------sv~g~-~k~dKe~i~eiLqE~w 71 (81)
T 1ghh_A 12 PLPAGAIDALAGELSRRIQY-----------AFPDNEGHVSVRYAAANNL-------SVIGA-TKEDKQRISEILQETW 71 (81)
T ss_dssp CCCTTHHHHHHHHHHHHHHH-----------HCSSSCCEEEEEEESSCEE-------EEESC-CHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH-----------HCCCCCCCEEEEECCCCCC-------CCCCC-CHHHHHHHHHHHHHHH
T ss_conf 78600699999999999987-----------6888644355522345774-------56677-7878999999999999
No 20
>>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} (A:)
Probab=36.75 E-value=13 Score=17.80 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=17.3
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 8887420664544875799999999
Q gi|254780423|r 145 IMFGYACRETADFMPAPIYYAHRIL 169 (413)
Q Consensus 145 iMFGYAc~ET~~~MPlpi~lAh~L~ 169 (413)
+|.=--|-|.|..+|+.++|+|+|.
T Consensus 9 ~lillGCPe~Pvq~p~~lyl~~~Lk 33 (157)
T 1kjn_A 9 ALXVLGCPESPVQIPLAIYTSHKLK 33 (157)
T ss_dssp EEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 8999469998513479999999998
No 21
>>2f0c_A Phage TP901-1 ORF49 (BPP); beta-barrel, beta prism, 3 helix parallel bundle, virus/viral protein complex; 1.65A {Lactococcus phage tp901-1} (A:75-191)
Probab=35.78 E-value=26 Score=15.84 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=18.6
Q ss_pred CEEEEECCCCEEECCCCCCCCCC
Q ss_conf 27999178837855873003655
Q gi|254780423|r 246 CSWYINPAGKFVIGGPCSDAGLT 268 (413)
Q Consensus 246 t~~~INPtG~FviGGP~~D~GLT 268 (413)
+.+.|||.|++..=||...+|-+
T Consensus 86 FHIDI~p~GsitWWG~~~~~~a~ 108 (117)
T 2f0c_A 86 FHIDIPSSGVCQWFGPTASSGTP 108 (117)
T ss_dssp EEEEECTTCCCEECSCCBSSCCE
T ss_pred EEEEECCCCEEEECCCCCCCCCC
T ss_conf 79973899738854898899885
No 22
>>1b3t_A Protein (nuclear protein EBNA1); nuclear protein, protein-DNA complex, DNA-binding, activator; HET: DNA; 2.20A {Epstein-barr virus} (A:)
Probab=29.73 E-value=38 Score=14.79 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=4.3
Q ss_pred CCCCCEEEEE
Q ss_conf 1178268999
Q gi|254780423|r 187 GPDAKSQVTI 196 (413)
Q Consensus 187 ~PDgKsQVTv 196 (413)
.|-.-+||||
T Consensus 128 ~PT~~~~Vtv 137 (147)
T 1b3t_A 128 APTCNIRVTV 137 (147)
T ss_dssp TTGGGEEEEE
T ss_pred CCCCCEEEEE
T ss_conf 9976447999
No 23
>>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus VF5} (A:1-8,A:308-318,A:493-706)
Probab=27.49 E-value=18 Score=16.90 Aligned_cols=35 Identities=9% Similarity=-0.023 Sum_probs=20.2
Q ss_pred HHEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 21100130058355507999824888689899999999
Q gi|254780423|r 319 RCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAIN 356 (413)
Q Consensus 319 ~c~vqlsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~ 356 (413)
=+.+.-+.-.|.++|+-+.|-- ++. +-+.|.+.+-
T Consensus 153 f~l~s~~~~~Gt~rP~~y~v~~-d~~--~~~~l~~~t~ 187 (233)
T 1yvu_A 153 ILATYNQVYEGTHQPIKVRKVY-GEL--PVEVLCSQIL 187 (233)
T ss_dssp EECCSCCCSTTCCCCEEEEEEE-CSS--CHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCEEEEEC-CCC--CHHHHHHHHH
T ss_conf 9997898889887784899978-989--9799999999
No 24
>>1zru_A Lactophage P2 receptor binding protein; domains: beta barrel, beta prism, beta barrel, structural genomics; 1.73A {Lactococcus lactis phage P2} (A:151-264)
Probab=25.90 E-value=44 Score=14.36 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=16.9
Q ss_pred CEEEEECCCCEEECCCCCC-CCCCCC
Q ss_conf 2799917883785587300-365556
Q gi|254780423|r 246 CSWYINPAGKFVIGGPCSD-AGLTGR 270 (413)
Q Consensus 246 t~~~INPtG~FviGGP~~D-~GLTGR 270 (413)
+.+.|||.|.+..=||..+ +..|-|
T Consensus 81 FHIDi~pdGsitWWG~~~~~~~~apR 106 (114)
T 1zru_A 81 FHIDINPNGSITWWGANIDKTPIATR 106 (114)
T ss_dssp EEEEECTTSCEEECSCCBCSSCEEEE
T ss_pred EEEEECCCCEEEECCCCCCCCCCCCC
T ss_conf 69971899758867886578987756
No 25
>>3hol_A TBPB; transferrin receptor, iron acquisition, vaccine, lipoprotein, transport protein; 1.98A {Actinobacillus pleuropneumoniae} PDB: 3hoe_A (A:1-18,A:269-509)
Probab=24.00 E-value=43 Score=14.43 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.0
Q ss_pred CCEEEEEEEECCCCCCCC
Q ss_conf 624888742066454487
Q gi|254780423|r 142 DQGIMFGYACRETADFMP 159 (413)
Q Consensus 142 DQGiMFGYAc~ET~~~MP 159 (413)
+-+.||-|+|..|||+|-
T Consensus 73 NG~T~ft~t~~~tpEsdK 90 (259)
T 3hol_A 73 NGKTMVAVACCSNLEYMK 90 (259)
T ss_dssp TTEEEEEEEECTTCSSEE
T ss_pred CCEEEEEEEEECCHHHCC
T ss_conf 883999999873344103
No 26
>>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel, TIM barrel, oxidoreductase; 1.65A {Methanopyrus kandleri} (A:232-318)
Probab=22.91 E-value=41 Score=14.60 Aligned_cols=23 Identities=9% Similarity=0.364 Sum_probs=17.0
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 00887883168988688999999
Q gi|254780423|r 10 ESVSEGHPDKICDRISDEIVDLV 32 (413)
Q Consensus 10 ESVs~GHPDKicDqISDaILD~~ 32 (413)
|-...|.+++.+++|+|.+||.+
T Consensus 45 ~~~~~gd~~~a~~~V~De~vd~~ 67 (87)
T 1ezw_A 45 EAIGKGDFGTAIGLVDEDMIEAF 67 (87)
T ss_dssp HHTTTTCHHHHHHHCCHHHHHHH
T ss_pred HHHCCCCHHHHHHHCCHHHHCCC
T ss_conf 87425545567641438773762
No 27
>>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} (A:)
Probab=22.43 E-value=34 Score=15.08 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=6.4
Q ss_pred CCHHHHHHHHH
Q ss_conf 87579999999
Q gi|254780423|r 158 MPAPIYYAHRI 168 (413)
Q Consensus 158 MPlpi~lAh~L 168 (413)
|.+|+.||+-+
T Consensus 125 mTfpH~larvv 135 (155)
T 1ns5_A 125 LTLPHPLVRVL 135 (155)
T ss_dssp SCCCHHHHHHH
T ss_pred CCCCHHHHHHH
T ss_conf 88708999999
No 28
>>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} (A:1-65)
Probab=22.01 E-value=52 Score=13.91 Aligned_cols=28 Identities=18% Similarity=0.410 Sum_probs=25.3
Q ss_pred ECCCCEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 1788378558730036555611102457
Q gi|254780423|r 251 NPAGKFVIGGPCSDAGLTGRKIIVDTYG 278 (413)
Q Consensus 251 NPtG~FviGGP~~D~GLTGRKiiVDtYG 278 (413)
-|+|...+-|+.+..+-.|-++|+=+|+
T Consensus 38 ~~sg~I~lNGaAAr~~~~GD~vII~aya 65 (65)
T 1uhe_A 38 KKRGEICVNGAAARKVAIGDVVIILAYA 65 (65)
T ss_dssp CSTTCEEEEGGGGGGCCTTCEEEEEEEE
T ss_pred CCCCEEEECCHHHEECCCCCEEEEEECC
T ss_conf 7788798688686125999999999816
No 29
>>1bkv_A T3-785; collagen, hydroxyproline, hydrogen bonding; 2.00A {} (A:)
Probab=22.00 E-value=52 Score=13.89 Aligned_cols=26 Identities=31% Similarity=0.675 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 58730036555611102457766677
Q gi|254780423|r 259 GGPCSDAGLTGRKIIVDTYGGASPHG 284 (413)
Q Consensus 259 GGP~~D~GLTGRKiiVDtYGg~~~hG 284 (413)
.||.|-.|.||-.=...-.|+.+|.|
T Consensus 2 ~gp~gp~gitgarglagp~gp~gp~g 27 (30)
T 1bkv_A 2 XGPXGPXGITGARGLAGPXGPXGPXG 27 (30)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77878875324332457988888888
No 30
>>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} (A:)
Probab=21.75 E-value=36 Score=14.96 Aligned_cols=11 Identities=18% Similarity=-0.112 Sum_probs=6.5
Q ss_pred CCHHHHHHHHH
Q ss_conf 87579999999
Q gi|254780423|r 158 MPAPIYYAHRI 168 (413)
Q Consensus 158 MPlpi~lAh~L 168 (413)
|-+|+.||+-+
T Consensus 124 mTfpH~Larli 134 (163)
T 1o6d_A 124 MTFTHGMTVLI 134 (163)
T ss_dssp SCCCHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 76647999999
No 31
>>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (D:342-399,D:455-512)
Probab=21.67 E-value=41 Score=14.55 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHH------HHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 5448757999999------9999999752035764100117826899
Q gi|254780423|r 155 ADFMPAPIYYAHR------ILRTLADARKNSGGDVSKLGPDAKSQVT 195 (413)
Q Consensus 155 ~~~MPlpi~lAh~------L~krL~~~Rk~~~g~~~~L~PDgKsQVT 195 (413)
+-|+|+...+..- =...|+++-+. +-++||||||-+.
T Consensus 45 sGfip~~w~~~~ghw~~~y~G~dlAd~I~d----lg~vR~DGKTLi~ 87 (116)
T 1mty_D 45 SGFIPLMWFIENNHIFEQYEGRELSEVIAE----LHGLRSDGKTLIA 87 (116)
T ss_dssp SCCCTHHHHHHTTCHHHHSTTCBHHHHHHH----TTCBCTTSSBBSC
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCHHHHHHH----CCCCCCCCCEECC
T ss_conf 676730002456789987689549999998----1975589997378
No 32
>>1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} (A:)
Probab=21.50 E-value=36 Score=14.89 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHH
Q ss_conf 487579999999
Q gi|254780423|r 157 FMPAPIYYAHRI 168 (413)
Q Consensus 157 ~MPlpi~lAh~L 168 (413)
-|.+||.|++-+
T Consensus 131 ~mTfpH~larli 142 (161)
T 1vh0_A 131 KMTFPHQMMRVV 142 (161)
T ss_dssp SSCCCHHHHHHH
T ss_pred CCCCCHHHHHHH
T ss_conf 266628999999
Done!