Query gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 413
No_of_seqs 150 out of 1826
Neff 4.7
Searched_HMMs 13730
Date Wed Jun 1 06:01:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780423.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mxaa3 d.130.1.1 (A:232-383) 100.0 0 0 562.1 13.8 151 258-413 1-151 (152)
2 d2p02a3 d.130.1.1 (A:274-417) 100.0 0 0 548.0 11.4 143 258-405 1-143 (144)
3 d1mxaa2 d.130.1.1 (A:108-231) 100.0 0 0 372.0 14.2 122 134-257 3-124 (124)
4 d2p02a2 d.130.1.1 (A:148-273) 100.0 0 0 369.3 12.1 121 135-257 2-126 (126)
5 d2p02a1 d.130.1.1 (A:38-147) S 100.0 0 0 331.4 8.9 106 4-131 2-109 (110)
6 d1mxaa1 d.130.1.1 (A:1-102) S- 100.0 0 0 311.1 7.5 100 3-124 1-102 (102)
7 d2dt5a1 a.4.5.38 (A:4-77) Tran 69.8 2.3 0.00017 20.0 3.7 53 342-413 22-74 (74)
8 d1w9ha1 c.55.3.10 (A:93-408) H 59.7 3.9 0.00028 18.6 3.3 18 88-105 61-78 (316)
9 d2f0ca1 b.21.1.3 (A:63-163) Ba 41.7 7.1 0.00051 16.9 2.2 24 246-270 70-93 (101)
10 d1u04a2 c.55.3.10 (A:324-770) 36.5 10 0.00074 15.9 2.4 25 14-39 126-150 (447)
11 d1kjna_ c.115.1.1 (A:) Hypothe 36.2 5.3 0.00039 17.7 0.9 19 151-169 10-28 (152)
12 d1j3ga_ d.118.1.1 (A:) AmpD pr 33.3 13 0.00097 15.2 2.6 20 245-264 73-92 (187)
13 d1ae1a_ c.2.1.2 (A:) Tropinone 31.2 9.5 0.00069 16.1 1.5 19 265-285 239-257 (258)
14 d1zrua1 b.21.1.3 (A:162-264) r 29.6 15 0.0011 14.9 2.3 25 246-270 70-95 (103)
15 d1t0ga_ d.120.1.2 (A:) Putativ 28.5 8.6 0.00062 16.4 0.9 20 275-296 45-64 (109)
16 d1ghha_ d.57.1.1 (A:) DNA dama 26.9 17 0.0013 14.5 4.5 36 157-203 12-49 (81)
17 d1bvsa1 a.5.1.1 (A:148-203) DN 26.1 5.9 0.00043 17.4 -0.3 28 12-39 12-39 (56)
18 d1b3ta_ d.58.8.1 (A:) Epstein 25.8 18 0.0013 14.3 3.5 10 187-196 128-137 (147)
19 d1yvua2 c.55.3.10 (A:315-706) 24.9 8.5 0.00062 16.4 0.4 26 328-356 321-346 (392)
20 d1to0a_ c.116.1.3 (A:) Hypothe 24.0 13 0.00094 15.3 1.2 10 158-167 130-139 (157)
21 d1gesa2 c.3.1.5 (A:147-262) Gl 23.6 20 0.0014 14.1 4.5 51 163-213 63-115 (116)
22 d1o6da_ c.116.1.3 (A:) Hypothe 23.5 13 0.00092 15.3 1.0 11 158-168 122-132 (147)
23 d1xoda1 b.55.1.4 (A:10-123) Sp 21.9 9.9 0.00072 16.0 0.2 11 92-102 42-52 (114)
24 d1vh0a_ c.116.1.3 (A:) Hypothe 21.6 15 0.0011 14.9 1.0 10 158-167 130-139 (157)
25 d2foka2 a.4.5.12 (A:144-286) R 21.5 18 0.0013 14.3 1.5 58 260-321 42-101 (143)
26 g1uhe.1 b.52.2.1 (B:,A:) Pyruv 20.1 23 0.0017 13.6 1.9 29 252-280 63-91 (121)
No 1
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=562.13 Aligned_cols=151 Identities=60% Similarity=0.995 Sum_probs=149.1
Q ss_pred ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCEEEE
Q ss_conf 55873003655561110245776667775335657440457788899999999975082322110013005835550799
Q gi|254780423|r 258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIF 337 (413)
Q Consensus 258 iGGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~vqlsYaIG~~~P~si~ 337 (413)
+|||.|||||||||||||||||++||||||||||||||||||||||||||||||||+|||++|+||||||||+++|+||+
T Consensus 1 iGGp~~d~GlTGRKiivDtYGg~~~~GGGafsGKD~tKVDRSaAY~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvsi~ 80 (152)
T d1mxaa3 1 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIM 80 (152)
T ss_dssp SCTTTTSEEETTSSHHHHHTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEE
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEE
T ss_conf 97986566775662789767775165887778886551101088999987777987089751377775404702000668
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9824888689899999999745999789998608998620210760207898766678954545789999986086
Q gi|254780423|r 338 VDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIGF 413 (413)
Q Consensus 338 V~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~~lk~~~g~ 413 (413)
|+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+ +||||++|++++||+++||
T Consensus 81 V~t~gt~~~~~~~i~~~I~~~FDl~P~~II~~L~L~~PiY~~TAayGHFGR~-----~f~WEk~d~v~~lk~a~gl 151 (152)
T d1mxaa3 81 VETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGRE-----HFPWEKTDKAQLLRDAAGL 151 (152)
T ss_dssp EEECSCCSSCHHHHHHHHHHHCCCSHHHHHHHTTCCSSCCGGGGSSCSSSCS-----SSGGGCCTTHHHHHHHSSC
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHHHHCCC
T ss_conf 8842686300588999999835987899987408999745123787788899-----9796241469999997089
No 2
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=100.00 E-value=0 Score=548.04 Aligned_cols=143 Identities=57% Similarity=0.914 Sum_probs=140.4
Q ss_pred ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCEEEE
Q ss_conf 55873003655561110245776667775335657440457788899999999975082322110013005835550799
Q gi|254780423|r 258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIF 337 (413)
Q Consensus 258 iGGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~vqlsYaIG~~~P~si~ 337 (413)
||||.|||||||||||||||||++||||||||||||||||||||||||||||||||+|||++|+||||||||+++|+||+
T Consensus 1 iGGp~~d~GlTGRKiivDtYGg~~~hGGGafsgKD~tKvDRSaAY~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvsi~ 80 (144)
T d2p02a3 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSIS 80 (144)
T ss_dssp SCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEE
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEE
T ss_conf 97986566775662789747774045886777774213677778899999999987377770699998633756323689
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98248886898999999997459997899986089986202107602078987666789545457899
Q gi|254780423|r 338 VDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIE 405 (413)
Q Consensus 338 V~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~ 405 (413)
|+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+ +||||++|+++
T Consensus 81 VdtfGT~~~~~~~i~~~I~~~FDl~P~~II~~L~L~~PiY~~TAaYGHFGR~-----~f~WEk~dkve 143 (144)
T d2p02a3 81 IFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRD-----SFPWEVPKKLK 143 (144)
T ss_dssp EECTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSSCGGGGSSSCSSSST-----TCGGGSCCCCC
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCC-----CCCEECCCCCC
T ss_conf 9968975358999999888604878899999828899865300576678899-----99801645656
No 3
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=372.03 Aligned_cols=122 Identities=45% Similarity=0.706 Sum_probs=113.8
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 30005898624888742066454487579999999999999752035764100117826899997497631454578876
Q gi|254780423|r 134 DCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSI 213 (413)
Q Consensus 134 ~~~~~GAGDQGiMFGYAc~ET~~~MPlpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViSt 213 (413)
+.+++||||||||||||||||++||||||+|||+|+|+|+++||+ +.++||||||||||||+|+|++|++|++||+|+
T Consensus 3 ~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lah~l~~~l~~~Rk~--~~~~~L~PD~KsQVTv~Y~~~~P~~i~tiViSt 80 (124)
T d1mxaa2 3 DPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKN--GTLPWLRPDAKSQVTFQYDDGKIVGIDAVVLST 80 (124)
T ss_dssp SGGGCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHT--SSSTTEEEEEEEEEEEEESSSCEEEEEEEEEEE
T ss_pred CHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEC
T ss_conf 710168886247665774896201766899999999999999981--999754688877999985079987888888614
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEE
Q ss_conf 50673268999998876520123322468854279991788378
Q gi|254780423|r 214 QHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFV 257 (413)
Q Consensus 214 QH~~~~~~~~~~~~ii~~vI~~~l~~~~l~~~t~~~INPtG~Fv 257 (413)
||++.....+.++.++++||++++|..+++++|+||||||||||
T Consensus 81 QH~~~v~~~~lr~~i~~~VI~~vlp~~~l~~~t~~~INPTGrFV 124 (124)
T d1mxaa2 81 QHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFV 124 (124)
T ss_dssp EECSSSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 68876699999999999888986014328989899988999839
No 4
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=100.00 E-value=0 Score=369.31 Aligned_cols=121 Identities=36% Similarity=0.610 Sum_probs=111.3
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC----CEEEEEEE
Q ss_conf 00058986248887420664544875799999999999997520357641001178268999974976----31454578
Q gi|254780423|r 135 CSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNK----VCEVKSIV 210 (413)
Q Consensus 135 ~~~~GAGDQGiMFGYAc~ET~~~MPlpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~k----P~~i~tVV 210 (413)
.+++||||||||||||||||++||||||+|||+|+++|+++||+ +.+|||||||||||||+|++++ |++|++||
T Consensus 2 ~~~~GAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~--~~~~~LrPD~KsQVTv~Y~~~~~~~~P~~i~tVV 79 (126)
T d2p02a2 2 EEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRN--GTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIV 79 (126)
T ss_dssp GGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 32137775415221674898344881899999999999999974--9997546887579999986699845678998888
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEE
Q ss_conf 87650673268999998876520123322468854279991788378
Q gi|254780423|r 211 LSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFV 257 (413)
Q Consensus 211 iStQH~~~~~~~~~~~~ii~~vI~~~l~~~~l~~~t~~~INPtG~Fv 257 (413)
+|+||++.....+.++.++++||++++|+.+++++|+|+||||||||
T Consensus 80 iStQH~~~~~~~~l~~~i~~~Vi~~vl~~~~ld~~t~~~INPTGrFV 126 (126)
T d2p02a2 80 ISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFV 126 (126)
T ss_dssp EEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCC
T ss_pred EECCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf 70356511126889966343353776862007989889989999869
No 5
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=100.00 E-value=0 Score=331.37 Aligned_cols=106 Identities=45% Similarity=0.810 Sum_probs=99.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEEC
Q ss_conf 73067300887883168988688999999863601235666760599993149849998785246555543344542001
Q gi|254780423|r 4 DFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQYVV 83 (413)
Q Consensus 4 ~~lFTSESVs~GHPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~~~v 83 (413)
+||||||||||||||||||||||||||+||++||+| ||||||++++|+|+|+|||++++.+
T Consensus 2 ~~lfTsEsVs~GHPDKicDqISDailD~~l~~Dp~a-------rVA~Et~v~~~~V~v~GEitt~~~v------------ 62 (110)
T d2p02a1 2 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDA-------KVACETVAKTGMILLAGEITSRAAV------------ 62 (110)
T ss_dssp EEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEEETTEEEEEEEEECSCCC------------
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEECCCEEEEEEEECCCCCC------------
T ss_conf 668985135799976799987759989998659553-------2568998538879998874243321------------
Q ss_pred CHHHHHHHHHHHHHCCCCCC--CCCCCCCCCEEEHHHHHHHHHHHHHHHC
Q ss_conf 67789999999984085870--1257332210003333456777554420
Q gi|254780423|r 84 DKEKFEKVVRSVIRSIGYEQ--EGFHWETVDVEVLLHSQSSDIAYGVDNA 131 (413)
Q Consensus 84 ~~~di~~ivR~~i~~IGY~~--~gfd~~~~~v~~~i~~QS~dIa~GVd~~ 131 (413)
||++|||+++++|||++ .||||++|.|+++|++|||||+||||.+
T Consensus 63 ---d~~~IvR~vi~~IGY~~~~~gfd~~t~~V~~~I~~QSpDIa~GVd~~ 109 (110)
T d2p02a1 63 ---DYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLD 109 (110)
T ss_dssp ---CHHHHHHHHHHHHTCEEGGGTEETTTSEEEEEEECCCHHHHHHHTTT
T ss_pred ---CHHHHHHHHHHCCCEECCCCCCCCCCEEEEEECCCCCHHHHHHCCCC
T ss_conf ---08899998613057746768726260077761257996898043699
No 6
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=311.06 Aligned_cols=100 Identities=45% Similarity=0.709 Sum_probs=93.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 87306730088788316898868899999986360123566676059999314984999878524655554334454200
Q gi|254780423|r 3 ADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQYV 82 (413)
Q Consensus 3 ~~~lFTSESVs~GHPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~~~ 82 (413)
++||||||||||||||||||||||||||+||+|||+| ||||||++++|+|+|+|||++++.
T Consensus 1 s~~lfTSEsVs~GHPDKicDqISDaIlD~~L~~Dp~s-------RVA~Et~~~~~~v~v~GEits~~~------------ 61 (102)
T d1mxaa1 1 AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKA-------RVACETYVKTGMVLVGGEITTSAW------------ 61 (102)
T ss_dssp CCEEEEEEEECTTSHHHHHHHHHHHHHHHHHTTCTTC-------EEEEEEEEETTEEEEEEEEECSCC------------
T ss_pred CCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEECCCCEEEEEEECCCCC------------
T ss_conf 9835830335799974799988899999999759753-------368899973782898776336443------------
Q ss_pred CCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCEEEHHHHHHHHH
Q ss_conf 1677899999999840858701--25733221000333345677
Q gi|254780423|r 83 VDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQSSDI 124 (413)
Q Consensus 83 v~~~di~~ivR~~i~~IGY~~~--gfd~~~~~v~~~i~~QS~dI 124 (413)
+ ||++|||+++++|||+++ ||||++|.|+++|++|||||
T Consensus 62 v---d~~~ivR~~i~~IGY~~~~~gfd~~~~~V~~~i~~QSpdI 102 (102)
T d1mxaa1 62 V---DIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDI 102 (102)
T ss_dssp C---CHHHHHHHHHHHHTCEEGGGTEETTTSEEEEEEEEECCC-
T ss_pred C---CHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 5---6789999999986423533662567318998144889998
No 7
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=69.83 E-value=2.3 Score=19.97 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 888689899999999745999789998608998620210760207898766678954545789999986086
Q gi|254780423|r 342 DSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIGF 413 (413)
Q Consensus 342 gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~~lk~~~g~ 413 (413)
|...++-++|.+. ..++|.-|.+.|.. +|.||+. .+-+.--++.+.|++.+||
T Consensus 22 g~~~vSS~~La~~----~gi~~~qVRKDls~----------fG~~G~~-----g~GY~V~~L~~~i~~iLGl 74 (74)
T d2dt5a1 22 GVHRTSSEQLGGL----AQVTAFQVRKDLSY----------FGSYGTR-----GVGYTVPVLKRELRHILGL 74 (74)
T ss_dssp TCCEECHHHHHHH----HTSCHHHHHHHHHH----------TTCCCCT-----TTCEEHHHHHHHHHHHHTT
T ss_pred CCEEECHHHHHHH----HCCCHHHHHHHHHH----------HCCCCCC-----CCCCCHHHHHHHHHHHHCC
T ss_conf 9915969999999----79699999987998----------6578999-----9990199999999998483
No 8
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=59.69 E-value=3.9 Score=18.57 Aligned_cols=18 Identities=6% Similarity=0.115 Sum_probs=12.2
Q ss_pred HHHHHHHHHHCCCCCCCC
Q ss_conf 999999998408587012
Q gi|254780423|r 88 FEKVVRSVIRSIGYEQEG 105 (413)
Q Consensus 88 i~~ivR~~i~~IGY~~~g 105 (413)
..+|+-++.-.+|...+.
T Consensus 61 ~~nI~lqin~KlGG~pw~ 78 (316)
T d1w9ha1 61 VDNLLVQFVSKLGGKPWI 78 (316)
T ss_dssp HHHHHHHHHHHTTCBCCE
T ss_pred HHHHHHHHHHHHCCCCEE
T ss_conf 999999999973985148
No 9
>d2f0ca1 b.21.1.3 (A:63-163) Baseplate protein (bpp), C-terminal domain {Lactococcus phage tp901-1 [TaxId: 35345]}
Probab=41.66 E-value=7.1 Score=16.93 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=18.8
Q ss_pred CEEEEECCCCEEECCCCCCCCCCCC
Q ss_conf 2799917883785587300365556
Q gi|254780423|r 246 CSWYINPAGKFVIGGPCSDAGLTGR 270 (413)
Q Consensus 246 t~~~INPtG~FviGGP~~D~GLTGR 270 (413)
+.+.|||.|.+..=||...+| |=|
T Consensus 70 FHIDi~p~GsitWWG~~~~~~-apR 93 (101)
T d2f0ca1 70 FHIDIPSSGVCQWFGPTASSG-TPR 93 (101)
T ss_dssp EEEEECTTCCCEECSCCBSSC-CEE
T ss_pred EEEEECCCCEEEEECCCCCCC-CCC
T ss_conf 689708996489834777899-865
No 10
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
Probab=36.53 E-value=10 Score=15.92 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78831689886889999998636012
Q gi|254780423|r 14 EGHPDKICDRISDEIVDLVYREAIES 39 (413)
Q Consensus 14 ~GHPDKicDqISDaILD~~L~~Dp~s 39 (413)
--||+|=.+-+-+. +|.++++++..
T Consensus 126 ~~~~~~~~~~~~e~-~~~~~~~~~~~ 150 (447)
T d1u04a2 126 DLNSDKGIIEVVEQ-VSSFMKGKELG 150 (447)
T ss_dssp CTTSHHHHHHHHHH-HHHHHTTCSCE
T ss_pred CCCCCCCHHHHHHH-HHHHHCCCCCE
T ss_conf 15688765565878-99875358730
No 11
>d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=36.21 E-value=5.3 Score=17.71 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=8.9
Q ss_pred ECCCCCCCCHHHHHHHHHH
Q ss_conf 0664544875799999999
Q gi|254780423|r 151 CRETADFMPAPIYYAHRIL 169 (413)
Q Consensus 151 c~ET~~~MPlpi~lAh~L~ 169 (413)
|-|.|-.+|+.++|+|+|.
T Consensus 10 CPe~Pvq~~~~lyl~~~Lk 28 (152)
T d1kjna_ 10 CPESPVQIPLAIYTSHKLK 28 (152)
T ss_dssp CSCSTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 9998613479999999987
No 12
>d1j3ga_ d.118.1.1 (A:) AmpD protein {Citrobacter freundii [TaxId: 546]}
Probab=33.29 E-value=13 Score=15.18 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=13.7
Q ss_pred CCEEEEECCCCEEECCCCCC
Q ss_conf 42799917883785587300
Q gi|254780423|r 245 DCSWYINPAGKFVIGGPCSD 264 (413)
Q Consensus 245 ~t~~~INPtG~FviGGP~~D 264 (413)
-..|+|...|..+-.=|..+
T Consensus 73 SaHy~I~~dG~i~q~V~~~~ 92 (187)
T d1j3ga_ 73 SAHCLIRRDGEIVQYVPFDK 92 (187)
T ss_dssp BCSEEEETTTEEEECSCSSS
T ss_pred CCEEEECCCCEEEEEECCCC
T ss_conf 84079733753778513342
No 13
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}
Probab=31.23 E-value=9.5 Score=16.12 Aligned_cols=19 Identities=42% Similarity=0.746 Sum_probs=16.3
Q ss_pred CCCCCCCEEECCCCCCCCCCC
Q ss_conf 365556111024577666777
Q gi|254780423|r 265 AGLTGRKIIVDTYGGASPHGG 285 (413)
Q Consensus 265 ~GLTGRKiiVDtYGg~~~hGG 285 (413)
.-+||.-|.|| |||..|||
T Consensus 239 ~~itG~~i~vD--GG~s~~g~ 257 (258)
T d1ae1a_ 239 SYITGQIIWAD--GGFTANGG 257 (258)
T ss_dssp TTCCSCEEEES--TTGGGCSC
T ss_pred CCCCCCEEEEC--CCEECCCC
T ss_conf 79768189948--99660588
No 14
>d1zrua1 b.21.1.3 (A:162-264) receptor binding protein, rbp, C-terminal domain {Lactococcus lactis phage p2 [TaxId: 100641]}
Probab=29.59 E-value=15 Score=14.94 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=16.9
Q ss_pred CEEEEECCCCEEECCCC-CCCCCCCC
Q ss_conf 27999178837855873-00365556
Q gi|254780423|r 246 CSWYINPAGKFVIGGPC-SDAGLTGR 270 (413)
Q Consensus 246 t~~~INPtG~FviGGP~-~D~GLTGR 270 (413)
+.+.|||.|.+..=||. +.+..|-|
T Consensus 70 FHIDi~p~GsitWWG~~~~~~~~apR 95 (103)
T d1zrua1 70 FHIDINPNGSITWWGANIDKTPIATR 95 (103)
T ss_dssp EEEEECTTSCEEECSCCBCSSCEEEE
T ss_pred EEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf 78970899648983576578977756
No 15
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.50 E-value=8.6 Score=16.40 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 2457766677753356574404
Q gi|254780423|r 275 DTYGGASPHGGGAFSGKDITKV 296 (413)
Q Consensus 275 DtYGg~~~hGGGAfSGKDptKV 296 (413)
+.||+-++++ .|.|||.|+.
T Consensus 45 ~~ygpgg~Y~--~faG~D~sra 64 (109)
T d1t0ga_ 45 SFYGSGGDYS--MFAGKDASRA 64 (109)
T ss_dssp TTSTTTCTTT--TTTTEECHHH
T ss_pred CEECCCCCCC--CCCCCCHHHH
T ss_conf 4088998664--3010327899
No 16
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=26.85 E-value=17 Score=14.47 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=25.0
Q ss_pred CCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 4875--7999999999999975203576410011782689999749763
Q gi|254780423|r 157 FMPA--PIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKV 203 (413)
Q Consensus 157 ~MPl--pi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP 203 (413)
.||. --.|...|.|||.. .-||++++|+|.|-....
T Consensus 12 ~lp~ga~~aL~~EL~kRl~~-----------~fpD~~~~v~Vr~~sa~~ 49 (81)
T d1ghha_ 12 PLPAGAIDALAGELSRRIQY-----------AFPDNEGHVSVRYAAANN 49 (81)
T ss_dssp CCCTTHHHHHHHHHHHHHHH-----------HCSSSCCEEEEEEESSCE
T ss_pred CCCCHHHHHHHHHHHHHHHH-----------HCCCCCCEEEEEECCCCC
T ss_conf 89802899999999998873-----------589975407986558896
No 17
>d1bvsa1 a.5.1.1 (A:148-203) DNA helicase RuvA subunit, C-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=26.09 E-value=5.9 Score=17.41 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8878831689886889999998636012
Q gi|254780423|r 12 VSEGHPDKICDRISDEIVDLVYREAIES 39 (413)
Q Consensus 12 Vs~GHPDKicDqISDaILD~~L~~Dp~s 39 (413)
|.-|-++|.+.|--|.+|...|..||.+
T Consensus 12 vGLGF~~KqAe~a~d~Vl~~~la~~p~a 39 (56)
T d1bvsa1 12 VGLGFAAKQAEEATDQVLDGELGKDGAV 39 (56)
T ss_dssp HHHTCCHHHHHHHHHHHHHCC-------
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8358407789987768886210258863
No 18
>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
Probab=25.76 E-value=18 Score=14.34 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=4.6
Q ss_pred CCCCCEEEEE
Q ss_conf 1178268999
Q gi|254780423|r 187 GPDAKSQVTI 196 (413)
Q Consensus 187 ~PDgKsQVTv 196 (413)
.|-.-+||||
T Consensus 128 ~PT~~~~Vtv 137 (147)
T d1b3ta_ 128 APTCNIRVTV 137 (147)
T ss_dssp TTGGGEEEEE
T ss_pred CCCCCEEEEE
T ss_conf 9976447999
No 19
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
Probab=24.94 E-value=8.5 Score=16.42 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=15.6
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 58355507999824888689899999999
Q gi|254780423|r 328 IGISRPLSIFVDLHDSGKVSESCVANAIN 356 (413)
Q Consensus 328 IG~~~P~si~V~t~gt~~~~d~~i~~~i~ 356 (413)
-|.++|+.+.|- +++. +-+.|.+.+-
T Consensus 321 qGT~rP~~Y~vl-~d~~--~~d~l~~lt~ 346 (392)
T d1yvua2 321 EGTHQPIKVRKV-YGEL--PVEVLCSQIL 346 (392)
T ss_dssp TTCCCCEEEEEE-ECSS--CHHHHHHHHH
T ss_pred CCCCCCCEEEEE-CCCC--CHHHHHHHHH
T ss_conf 877788589998-8989--9899999999
No 20
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=23.99 E-value=13 Score=15.25 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=5.1
Q ss_pred CCHHHHHHHH
Q ss_conf 8757999999
Q gi|254780423|r 158 MPAPIYYAHR 167 (413)
Q Consensus 158 MPlpi~lAh~ 167 (413)
|-+||.||+-
T Consensus 130 mT~pH~l~r~ 139 (157)
T d1to0a_ 130 MTFPHQLMRL 139 (157)
T ss_dssp SCCCHHHHHH
T ss_pred CCCHHHHHHH
T ss_conf 8765899999
No 21
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}
Probab=23.58 E-value=20 Score=14.08 Aligned_cols=51 Identities=8% Similarity=0.189 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHC--CCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 9999999999997520--35764100117826899997497631454578876
Q gi|254780423|r 163 YYAHRILRTLADARKN--SGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSI 213 (413)
Q Consensus 163 ~lAh~L~krL~~~Rk~--~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViSt 213 (413)
.++..+.+.|.+..-+ ..-.+.....+...+|+++.++++....+.|++++
T Consensus 63 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~ 115 (116)
T d1gesa2 63 MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI 115 (116)
T ss_dssp HHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEECCCCEEECCEEEEEC
T ss_conf 36999999999779999939999999986996799998999999929999900
No 22
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=23.51 E-value=13 Score=15.32 Aligned_cols=11 Identities=18% Similarity=-0.112 Sum_probs=6.1
Q ss_pred CCHHHHHHHHH
Q ss_conf 87579999999
Q gi|254780423|r 158 MPAPIYYAHRI 168 (413)
Q Consensus 158 MPlpi~lAh~L 168 (413)
|-+||.||+-+
T Consensus 122 mT~pH~l~rv~ 132 (147)
T d1o6da_ 122 MTFTHGMTVLI 132 (147)
T ss_dssp SCCCHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 76647999999
No 23
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}
Probab=21.86 E-value=9.9 Score=16.00 Aligned_cols=11 Identities=9% Similarity=-0.142 Sum_probs=4.4
Q ss_pred HHHHHHCCCCC
Q ss_conf 99998408587
Q gi|254780423|r 92 VRSVIRSIGYE 102 (413)
Q Consensus 92 vR~~i~~IGY~ 102 (413)
.|..++=+||.
T Consensus 42 ~~~~Y~I~g~~ 52 (114)
T d1xoda1 42 GGTEFLVHGER 52 (114)
T ss_dssp ---CCEEEEEE
T ss_pred CCCEEEEEEEE
T ss_conf 98359999998
No 24
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=21.57 E-value=15 Score=14.90 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=5.3
Q ss_pred CCHHHHHHHH
Q ss_conf 8757999999
Q gi|254780423|r 158 MPAPIYYAHR 167 (413)
Q Consensus 158 MPlpi~lAh~ 167 (413)
|-+||.||+-
T Consensus 130 mT~pH~larv 139 (157)
T d1vh0a_ 130 MTFPHQMMRV 139 (157)
T ss_dssp SCCCHHHHHH
T ss_pred CCCHHHHHHH
T ss_conf 7753599999
No 25
>d2foka2 a.4.5.12 (A:144-286) Restriction endonuclease FokI, N-terminal (recognition) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=21.54 E-value=18 Score=14.32 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=28.5
Q ss_pred CCCCCCCCCCC--CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHE
Q ss_conf 87300365556--111024577666777533565744045778889999999997508232211
Q gi|254780423|r 260 GPCSDAGLTGR--KIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCT 321 (413)
Q Consensus 260 GP~~D~GLTGR--KiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~ 321 (413)
|..|..|.|-- -|.+|+-+-.-+. =-+|=-|-.|-|---+|||||+-+|..||++.-.
T Consensus 42 GF~gE~GFts~p~~i~~~~La~a~~~----ek~kIKsd~egtSDKYaR~i~~wL~~~Glv~q~~ 101 (143)
T d2foka2 42 GFSGESGFTSLPEGILLDTLANAMPK----DKGEIRNNWEGSSDKYARMIGGWLDKLGLVKQGK 101 (143)
T ss_dssp SSTTSTTSCCCCHHHHHHHHHTSCHH----HHHHHHHHCCCHHHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEECC
T ss_conf 75566555427688999988640665----7754424666560899999999998715103035
No 26
>g1uhe.1 b.52.2.1 (B:,A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Helicobacter pylori [TaxId: 210]}
Probab=20.12 E-value=23 Score=13.64 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=23.6
Q ss_pred CCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 78837855873003655561110245776
Q gi|254780423|r 252 PAGKFVIGGPCSDAGLTGRKIIVDTYGGA 280 (413)
Q Consensus 252 PtG~FviGGP~~D~GLTGRKiiVDtYGg~ 280 (413)
++|...+-|+.+..+-.|-+||+=+|+-.
T Consensus 63 ~sg~I~lNGAAA~~~~~GD~vII~sy~~~ 91 (121)
T g1uhe.1 63 KRGEICVNGAAARKVAIGDVVIILAYASM 91 (121)
T ss_dssp STTCEEEEGGGGGGCCTTCEEEEEEEEEE
T ss_pred CCCEEEECCHHHEECCCCCEEEEEECCCC
T ss_conf 88879855856423489999999982647
Done!