RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780423|ref|YP_003064836.1| S-adenosylmethionine
synthetase [Candidatus Liberibacter asiaticus str. psy62]
(413 letters)
>gnl|CDD|179974 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.
Length = 384
Score = 623 bits (1610), Expect = e-179
Identities = 220/412 (53%), Positives = 269/412 (65%), Gaps = 33/412 (8%)
Query: 4 DFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAG 63
+LFTSESVSEGHPDKI D+ISD I+D + + D N+ RVACE LVT V+VAG
Sbjct: 2 RYLFTSESVSEGHPDKIADQISDAILDAILAQ------DPNA-RVACETLVTTGLVVVAG 54
Query: 64 EVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQ--EGFHWETVDVEVLLHSQS 121
E+ T YV E++VR I+ IGY GF T V V + QS
Sbjct: 55 EIT-----------TSAYV----DIEEIVRETIKEIGYTSSEYGFDANTCAVLVSIGEQS 99
Query: 122 SDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGG 181
DIA GVD D +GAGDQGIMFGYAC ET + MP PI AHR++R LA+ RK+ G
Sbjct: 100 PDIAQGVDRDELD--EIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKS--G 155
Query: 182 DVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRS-VVEPYILKALEDI 240
+ L PDAKSQVT+ Y + K + +IV+S QH DP + ++R V+E I L
Sbjct: 156 TLPYLRPDAKSQVTVEYENGKPVRIDTIVVSTQH-DPDVSQEQLREDVIEEVIKPVLPAE 214
Query: 241 KISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAA 300
+ D + INP G+FVIGGP DAGLTGRKIIVDTYGG + HGGGAFSGKD TKVDR+A
Sbjct: 215 LLDEDTKFLINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSA 274
Query: 301 AYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMD 360
AYAARY+AKNIVAAGLADRC +QLSYAIG++ P+SI+VD +GKVS+ + A+ +V D
Sbjct: 275 AYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYVDTFGTGKVSDEKIEEAVREVFD 334
Query: 361 LSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412
L +GI L+L RPIY +T+AYGHFGR D FPWE D +E LK A G
Sbjct: 335 LRPAGIIKMLDLRRPIYRKTAAYGHFGRE---DLDFPWEKTDKVEALKAAAG 383
>gnl|CDD|183537 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional.
Length = 386
Score = 497 bits (1281), Expect = e-141
Identities = 212/413 (51%), Positives = 263/413 (63%), Gaps = 34/413 (8%)
Query: 4 DFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAG 63
FLFTSESV+EGHPDK+CD+ISD I+D R+ D S RVACEVLV+ VIVAG
Sbjct: 3 TFLFTSESVTEGHPDKLCDQISDAILDACLRQ------DPAS-RVACEVLVSTGIVIVAG 55
Query: 64 EVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQEGFHWETVDVEVLLHSQSSD 123
E IT VD EK+VR+VI+ IGY++ GF T V V L QS D
Sbjct: 56 E------------ITSSAKVD---IEKIVRNVIKEIGYDELGFDPRTCTVLVSLGEQSPD 100
Query: 124 IAYGVDNASDDCST---LGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSG 180
IA GVD A LGAGDQG MFGYAC ET + MP PI AHR+ + L ARK
Sbjct: 101 IAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARK--D 158
Query: 181 GDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKA-LED 239
G + L PD K+QVT+ Y D + V +IV+S QH D + D +R V ++K ED
Sbjct: 159 GLLPGLLPDGKTQVTVEYEDGRPVRVDTIVVSAQH-DESVDLETLRRDVIENVIKPVFED 217
Query: 240 IKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRA 299
+ + INP G+FV+GGP +D GLTGRKI+VDTYGG + HGGGAFSGKD +KVDR+
Sbjct: 218 FWLDDETRILINPTGRFVVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRS 277
Query: 300 AAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVM 359
AAYAARY+AKNIVAAGLA RC +QLSYAIG +RP+S+ V+ +G VS+ + A+ +
Sbjct: 278 AAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPVSVQVNTFGTGTVSDEELTRAVREHF 337
Query: 360 DLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412
DL +GI + LNL PIY +T+AYGHFGR+ FPWE D L+ A+G
Sbjct: 338 DLRPAGIIEKLNLRNPIYRKTAAYGHFGRTL-----FPWEKTDKAALLRAAVG 385
>gnl|CDD|162167 TIGR01034, metK, S-adenosylmethionine synthetase. Tandem isozymes
of this S-adenosylmethionine synthetase in E. coli are
designated MetK and MetX.
Length = 377
Score = 446 bits (1150), Expect = e-126
Identities = 202/409 (49%), Positives = 257/409 (62%), Gaps = 35/409 (8%)
Query: 6 LFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEV 65
LFTSESVSEGHPDKI D+ISD ++D + K D + +VACE V V++ GE
Sbjct: 1 LFTSESVSEGHPDKIADQISDAVLDAIL------KQDPKA-KVACETFVKTGLVLIGGE- 52
Query: 66 RLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYE--QEGFHWETVDVEVLLHSQSSD 123
IT VD ++V R+ I+ IGY GF +T V V + +QS D
Sbjct: 53 -----------ITTSAYVD---IQEVARNTIKDIGYTDSDYGFDAKTCAVLVAIGNQSPD 98
Query: 124 IAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDV 183
IA GVD A + GAGDQGIMFGYA ET + MP PI AH++L+ A+ RK+ G +
Sbjct: 99 IAQGVDKA--NPEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKS--GTL 154
Query: 184 SKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVV-EPYILKALEDIKI 242
L PD KSQVT++Y DNK V +IVLS QH DP + +R + E I L +
Sbjct: 155 PWLRPDGKSQVTVQYEDNKPVRVDTIVLSTQH-DPDISQKDLREAIIEEIIKPVLPAEYL 213
Query: 243 SPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAY 302
++INP G+FVIGGP D GLTGRKIIVDTYGG + HGGGAFSGKD +KVDR+AAY
Sbjct: 214 DEKTKFFINPTGRFVIGGPMGDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAY 273
Query: 303 AARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLS 362
AARY+AKNIVAAGLADRC +QLSYAIG++ P+SI ++ + K SE + N + + DL
Sbjct: 274 AARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMIETFGTSKKSEEELLNVVKENFDLR 333
Query: 363 VSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAI 411
GI + L+L +PIY +T+ YGHFGR FPWE D +E LK+A+
Sbjct: 334 PGGIIEKLDLLKPIYRKTAVYGHFGREE-----FPWEKPDKLEELKRAL 377
>gnl|CDD|185448 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional.
Length = 398
Score = 409 bits (1052), Expect = e-114
Identities = 185/413 (44%), Positives = 247/413 (59%), Gaps = 47/413 (11%)
Query: 1 MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVI 60
FLFTSESVSEGHPDK+CD+ISD ++D + SK VACE V+
Sbjct: 7 SVGHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSK-------VACETCAKTGMVM 59
Query: 61 VAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLH 118
V GE IT + VVD ++KVVR ++ IGY+ G ++T +V V +
Sbjct: 60 VFGE------------ITTKAVVD---YQKVVRDTVKEIGYDDTEKGLDYKTCNVLVAIE 104
Query: 119 SQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKN 178
QS DIA GV + +GAGDQGIMFGYA ET + MP A ++ + L++ RKN
Sbjct: 105 QQSPDIAQGVHVGKKE-EDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKN 163
Query: 179 SGGDVSKLGPDAKSQVTIRYVDNKVCE-----VKSIVLSIQHFDPTWDRGKVRS-----V 228
G + L PDAK+QVT+ Y + V +I++S QH D ++R V
Sbjct: 164 --GILPWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQH-DEGVSNEEIREDLMEHV 220
Query: 229 VEPYILKALEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAF 288
++P I L D + +++NP+G+FVIGGP DAGLTGRKIIVDTYGG HGGGAF
Sbjct: 221 IKPVIPAKLLD----EETKYHLNPSGRFVIGGPHGDAGLTGRKIIVDTYGGWGAHGGGAF 276
Query: 289 SGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGK--V 346
SGKD +KVDR+AAYAAR++AK++VAAGL RC +Q+SYAIG++ PLSI V+ + +GK
Sbjct: 277 SGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIHVNTYGTGKKGY 336
Query: 347 SESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWE 399
+ + + K DL I L+L RPI+ +T++YGHFGRS D F WE
Sbjct: 337 DDEDLLEIVQKNFDLRPGDIIKELDLRRPIFQKTASYGHFGRS---DPEFTWE 386
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase.
Length = 386
Score = 339 bits (871), Expect = 8e-94
Identities = 171/409 (41%), Positives = 237/409 (57%), Gaps = 39/409 (9%)
Query: 5 FLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGE 64
FLFTSESV+EGHPDK+CD+ISD ++D + +SK VACE N V+V GE
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSK-------VACETCTKTNMVMVFGE 56
Query: 65 VRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQSS 122
IT + VD +EK+VR R IG+ + G + V V + QS
Sbjct: 57 ------------ITTKAKVD---YEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSP 101
Query: 123 DIAYGVD-NASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGG 181
DIA GV + + +GAGDQG MFGYA ET + MP A ++ L + RKN G
Sbjct: 102 DIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKN--G 159
Query: 182 DVSKLGPDAKSQVTIRYVDNKVC----EVKSIVLSIQHFDPTWDRGKVRSVVEPYILK-A 236
L PD K+QVT+ Y + V ++++S QH D T ++ + ++ +++K
Sbjct: 160 TCPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQH-DETVTNDEIAADLKEHVIKPV 218
Query: 237 LEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKV 296
+ + + +++NP+G+FVIGGP DAGLTGRKII+DTYGG HGGGAFSGKD TKV
Sbjct: 219 IPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKV 278
Query: 297 DRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAIN 356
DR+ AY R AK++VAAGLA RC +Q+SYAIG+ PLS+FVD + +GK+ + + +
Sbjct: 279 DRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVK 338
Query: 357 KVMDLSVSGIRDHLNLSR---PIYAQTSAYGHFGRSANQDGFFPWEALD 402
+ D I +L+L R + +T+AYGHFGR D F WE +
Sbjct: 339 ENFDFRPGMIAINLDLKRGGNGRFQKTAAYGHFGR---DDPDFTWEVVK 384
>gnl|CDD|179849 PRK04439, PRK04439, S-adenosylmethionine synthetase; Provisional.
Length = 399
Score = 29.0 bits (66), Expect = 2.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 15 GHPDKICDRISDEI 28
GHPD ICD I++ +
Sbjct: 28 GHPDTICDGIAEAV 41
>gnl|CDD|184314 PRK13767, PRK13767, ATP-dependent helicase; Provisional.
Length = 876
Score = 27.9 bits (63), Expect = 4.9
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 32 VYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHG 70
YRE +E MD+ + EVL + I GE+ + G
Sbjct: 794 TYREILEDYMDIENAE---EVL----EKIRDGEIEVVIG 825
>gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large
subunit. Anthranilate (2-aminobenzoate) is an
intermediate of tryptophan (Trp) biosynthesis and
degradation. Members of this family are the large
subunit of anthranilate 1,2-dioxygenase, which acts in
Trp degradation by converting anthranilate to catechol.
Closely related paralogs typically are the benzoate
1,2-dioxygenase large subunit, among the larger set of
ring-hydroxylating dioxygenases.
Length = 438
Score = 27.6 bits (61), Expect = 6.3
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 104 EGFHWETVD---VEVLLHSQSSDIAYGVDNASDDCSTLGAGD 142
+G+H TV V + H Q + A G + A+ D S LGAGD
Sbjct: 205 DGYHVSTVHYNYVATVQHRQQVNAAKGGELATLDYSKLGAGD 246
>gnl|CDD|185492 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit;
Provisional.
Length = 1054
Score = 27.3 bits (61), Expect = 7.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 220 WDRGKVRSVVE---PYILKALEDIKISPDCSWYINPAGKFVI 258
WD ++ E P++L+ L D I+ SW P GK+ I
Sbjct: 188 WDGIRLFQTYESNVPFVLRFLIDNNIT-GGSWLTLPKGKYKI 228
>gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase.
Length = 332
Score = 27.4 bits (61), Expect = 7.3
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 273 IVDTYGGASPHGGGAFS----GKDITKVDRAAAYAARYL 307
+VDT G GG S GKDI + RA YAA +
Sbjct: 279 LVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVI 317
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,720,919
Number of extensions: 435025
Number of successful extensions: 834
Number of sequences better than 10.0: 1
Number of HSP's gapped: 801
Number of HSP's successfully gapped: 17
Length of query: 413
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 317
Effective length of database: 3,920,105
Effective search space: 1242673285
Effective search space used: 1242673285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)