RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus str. psy62] (413 letters) >d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 152 Score = 216 bits (551), Expect = 3e-57 Identities = 90/155 (58%), Positives = 108/155 (69%), Gaps = 5/155 (3%) Query: 258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLA 317 IGGP D GLTGRKIIVDTYGG + HGGGAFSGKD +KVDR+AAYAARY+AKNIVAAGLA Sbjct: 1 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLA 60 Query: 318 DRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIY 377 DRC IQ+SYAIG++ P SI V+ + KV + + + DL G+ L+L PIY Sbjct: 61 DRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIY 120 Query: 378 AQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412 +T+AYGHFGR FPWE D + L+ A G Sbjct: 121 KETAAYGHFGREH-----FPWEKTDKAQLLRDAAG 150 >d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 144 Score = 205 bits (523), Expect = 5e-54 Identities = 81/148 (54%), Positives = 102/148 (68%), Gaps = 5/148 (3%) Query: 258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLA 317 IGGP DAGLTGRKIIVDTYGG HGGGAFSGKD TKVDR+AAYAAR++AK++V GL Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60 Query: 318 DRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIY 377 R +Q+SYAIG+S PLSI + + + + SE + + K DL I L+L +PIY Sbjct: 61 RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIY 120 Query: 378 AQTSAYGHFGRSANQDGFFPWEALDLIE 405 +T+AYGHFGR + FPWE ++ Sbjct: 121 QRTAAYGHFGRDS-----FPWEVPKKLK 143 >d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 124 Score = 129 bits (327), Expect = 3e-31 Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 2/120 (1%) Query: 138 LGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIR 197 GAGDQG+MFGYA ET MPAPI YAHR+++ A+ RKN G + L PDAKSQVT + Sbjct: 7 QGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKN--GTLPWLRPDAKSQVTFQ 64 Query: 198 YVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFV 257 Y D K+ + ++VLS QH + + +V+E I L ++ ++INP G+FV Sbjct: 65 YDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFV 124 >d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 126 Score = 130 bits (327), Expect = 3e-31 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 6/124 (4%) Query: 138 LGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIR 197 +GAGDQG+MFGYA ET + MP I AH++ LA+ R+N G + L PD+K+QVT++ Sbjct: 5 IGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRN--GTLPWLRPDSKTQVTVQ 62 Query: 198 YVDNK----VCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPA 253 Y+ ++ V +IV+S+QH + ++ E I + + D +++ P+ Sbjct: 63 YMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPS 122 Query: 254 GKFV 257 G+FV Sbjct: 123 GRFV 126 >d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 110 Score = 120 bits (302), Expect = 2e-28 Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 24/127 (18%) Query: 5 FLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGE 64 FLFTSESV EGHPDKICD+ISD ++D ++ ++ +VACE + +++AGE Sbjct: 3 FLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDA-------KVACETVAKTGMILLAGE 55 Query: 65 VRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYE--QEGFHWETVDVEVLLHSQSS 122 + ++KVVR ++ IGY+ +GF ++T +V V L QS Sbjct: 56 ITSRA---------------AVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSP 100 Query: 123 DIAYGVD 129 DIA GV Sbjct: 101 DIAQGVH 107 >d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 102 Score = 106 bits (267), Expect = 3e-24 Identities = 44/124 (35%), Positives = 59/124 (47%), Gaps = 24/124 (19%) Query: 3 ADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVA 62 A LFTSESVSEGHPDKI D+ISD ++D + + ++ RVACE V V+V Sbjct: 1 AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKA-------RVACETYVKTGMVLVG 53 Query: 63 GEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQ 120 GE+ E++ R+ +R IGY GF + V + Q Sbjct: 54 GEITTSA---------------WVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQ 98 Query: 121 SSDI 124 S DI Sbjct: 99 SPDI 102 >d2o9ux1 d.17.1.1 (X:1001-1096) Monellin, B & A chains together {Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]} Length = 96 Score = 30.4 bits (68), Expect = 0.25 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 11/70 (15%) Query: 79 GQYVVDKEK---------FEKVVRSVIRSIGYEQEGFHWETVDVEVLLHSQSSDIAYGVD 129 G++ VD+E F KV+R ++ YE EGF E E L+ +SD + D Sbjct: 16 GKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFR-EIKGYEYQLYVYASDKLFRAD 74 Query: 130 NASDDCSTLG 139 S+D T G Sbjct: 75 -ISEDYKTRG 83 >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} Length = 249 Score = 28.1 bits (62), Expect = 1.5 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 290 GKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQ 323 GK AA AAR L + + A G A C I+ Sbjct: 119 GKPS---YLEAAQAARRLRERLTAEGGALPCAIR 149 >d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Length = 346 Score = 27.0 bits (58), Expect = 2.7 Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 1/62 (1%) Query: 113 VEVLLHSQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTL 172 +L ++ SD G+ + +P P +Y + + Sbjct: 286 ARILSEGGDYVDSFSYWTFSDVFEERDVPRSQFHGGFGLV-ALNMIPKPTFYTFKFFNAM 344 Query: 173 AD 174 + Sbjct: 345 GE 346 >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Score = 26.8 bits (59), Expect = 3.0 Identities = 4/11 (36%), Positives = 9/11 (81%) Query: 158 MPAPIYYAHRI 168 +PA ++Y+ +I Sbjct: 361 LPATVHYSDKI 371 >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Score = 26.9 bits (59), Expect = 3.1 Identities = 2/11 (18%), Positives = 5/11 (45%) Query: 158 MPAPIYYAHRI 168 +P + Y + Sbjct: 295 LPVTVNYPKLV 305 >d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase {Desulfovibrio gigas [TaxId: 879]} Length = 597 Score = 26.9 bits (58), Expect = 3.2 Identities = 7/29 (24%), Positives = 10/29 (34%) Query: 281 SPHGGGAFSGKDITKVDRAAAYAARYLAK 309 + GG F K + A AA + Sbjct: 104 ANPMGGTFGYKFSPTSEALVAVAAMATGR 132 >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Score = 26.8 bits (59), Expect = 3.4 Identities = 6/10 (60%), Positives = 9/10 (90%) Query: 159 PAPIYYAHRI 168 PAP++YAH+ Sbjct: 415 PAPVHYAHKF 424 >d1ylia1 d.38.1.1 (A:11-152) Putative acyl-coa thioester hydrolase HI0827 {Haemophilus influenzae [TaxId: 727]} Length = 142 Score = 26.5 bits (58), Expect = 3.8 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 2/89 (2%) Query: 283 HGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHD 342 G F G ++++D A A+ +A V + ++G + + Sbjct: 20 ANGDIFGGWIMSQMDMGGAILAKEIAHGRVVTVAVESMNFIKPISVGDV--VCCYGQCLK 77 Query: 343 SGKVSESCVANAINKVMDLSVSGIRDHLN 371 G+ S K + G R + Sbjct: 78 VGRSSIKIKVEVWVKKVASEPIGERYCVT 106 >d1lwba_ a.133.1.3 (A:) Prokaryotic phospholipase A2 {Streptomyces violaceoruber [TaxId: 1935]} Length = 122 Score = 26.5 bits (58), Expect = 4.1 Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 119 SQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACR 152 +QS+ AY D ++D C+ G F AC Sbjct: 29 NQSAWAAYEFDWSTDLCTQAPDNPFGFPFNTACA 62 >d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Length = 216 Score = 26.3 bits (57), Expect = 4.4 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 5/51 (9%) Query: 99 IGYEQEGFHWETVDVEVLLHSQSSDIAYGVDNASDDCSTLGAGDQ----GI 145 IG + DV L + S+ + V S S L DQ GI Sbjct: 156 IGVGSGSRLAQEFDVSDALRAGSNLLVVRVHQWSAA-SYLEDQDQWWLPGI 205 >d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164 Score = 26.3 bits (57), Expect = 4.5 Identities = 6/23 (26%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Query: 80 QYVVDKEKFEKVVR-SVIRSIGY 101 + ++ +FE+ V+ S+++S+G+ Sbjct: 142 LWRDNRPEFERQVKLSILKSLGF 164 >d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 584 Score = 25.9 bits (56), Expect = 5.7 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 7/48 (14%) Query: 206 VKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDI--KISPDCSWYIN 251 + IV + + T D +V + + K + D +WY++ Sbjct: 394 AQQIVAEMLSYLETADYSIREEIV-----LKVAILAEKYAVDYTWYVD 436 >d1wu4a1 a.102.1.2 (A:6-381) Xylanase Y {Bacillus halodurans [TaxId: 86665]} Length = 376 Score = 25.7 bits (56), Expect = 6.6 Identities = 8/34 (23%), Positives = 12/34 (35%) Query: 368 DHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEAL 401 + S P Y Y F AN++ W+ Sbjct: 184 PEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEA 217 >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 Score = 25.4 bits (54), Expect = 7.7 Identities = 17/135 (12%), Positives = 30/135 (22%), Gaps = 2/135 (1%) Query: 144 GIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKV 203 F RE + A+ + A + G + K + ++ V Sbjct: 79 LSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVL--K 136 Query: 204 CEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFVIGGPCS 263 C+V P D +E + + + P G V Sbjct: 137 CDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 Query: 264 DAGLTGRKIIVDTYG 278 K Sbjct: 197 LPSYMVGKREFSCVA 211 >d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase {Bacteriophage PHI-6 [TaxId: 10879]} Length = 664 Score = 25.4 bits (55), Expect = 9.0 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 18/68 (26%) Query: 354 AINKVMDLSVSGIRDHLNLSRPIYAQT-------------SAYGH--FGRSANQDGFFPW 398 A+N + +R + S+ YA T + ++ D F+P Sbjct: 278 ALNAPIMAVAQPVR-NKIYSK--YAYTFHHTTRLNKEEKVKEWSLCVATDVSDHDTFWPG 334 Query: 399 EALDLIEP 406 DLI Sbjct: 335 WLRDLICD 342 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,564,686 Number of extensions: 72559 Number of successful extensions: 212 Number of sequences better than 10.0: 1 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 26 Length of query: 413 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 325 Effective length of database: 1,199,356 Effective search space: 389790700 Effective search space used: 389790700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.1 bits)