RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780423|ref|YP_003064836.1| S-adenosylmethionine
synthetase [Candidatus Liberibacter asiaticus str. psy62]
(413 letters)
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 152
Score = 216 bits (551), Expect = 3e-57
Identities = 90/155 (58%), Positives = 108/155 (69%), Gaps = 5/155 (3%)
Query: 258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLA 317
IGGP D GLTGRKIIVDTYGG + HGGGAFSGKD +KVDR+AAYAARY+AKNIVAAGLA
Sbjct: 1 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLA 60
Query: 318 DRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIY 377
DRC IQ+SYAIG++ P SI V+ + KV + + + DL G+ L+L PIY
Sbjct: 61 DRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIY 120
Query: 378 AQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412
+T+AYGHFGR FPWE D + L+ A G
Sbjct: 121 KETAAYGHFGREH-----FPWEKTDKAQLLRDAAG 150
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 205 bits (523), Expect = 5e-54
Identities = 81/148 (54%), Positives = 102/148 (68%), Gaps = 5/148 (3%)
Query: 258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLA 317
IGGP DAGLTGRKIIVDTYGG HGGGAFSGKD TKVDR+AAYAAR++AK++V GL
Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60
Query: 318 DRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIY 377
R +Q+SYAIG+S PLSI + + + + SE + + K DL I L+L +PIY
Sbjct: 61 RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIY 120
Query: 378 AQTSAYGHFGRSANQDGFFPWEALDLIE 405
+T+AYGHFGR + FPWE ++
Sbjct: 121 QRTAAYGHFGRDS-----FPWEVPKKLK 143
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 129 bits (327), Expect = 3e-31
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 138 LGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIR 197
GAGDQG+MFGYA ET MPAPI YAHR+++ A+ RKN G + L PDAKSQVT +
Sbjct: 7 QGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKN--GTLPWLRPDAKSQVTFQ 64
Query: 198 YVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFV 257
Y D K+ + ++VLS QH + + +V+E I L ++ ++INP G+FV
Sbjct: 65 YDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFV 124
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 126
Score = 130 bits (327), Expect = 3e-31
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 6/124 (4%)
Query: 138 LGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIR 197
+GAGDQG+MFGYA ET + MP I AH++ LA+ R+N G + L PD+K+QVT++
Sbjct: 5 IGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRN--GTLPWLRPDSKTQVTVQ 62
Query: 198 YVDNK----VCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPA 253
Y+ ++ V +IV+S+QH + ++ E I + + D +++ P+
Sbjct: 63 YMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPS 122
Query: 254 GKFV 257
G+FV
Sbjct: 123 GRFV 126
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human
(Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 110
Score = 120 bits (302), Expect = 2e-28
Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 24/127 (18%)
Query: 5 FLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGE 64
FLFTSESV EGHPDKICD+ISD ++D ++ ++ +VACE + +++AGE
Sbjct: 3 FLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDA-------KVACETVAKTGMILLAGE 55
Query: 65 VRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYE--QEGFHWETVDVEVLLHSQSS 122
+ ++KVVR ++ IGY+ +GF ++T +V V L QS
Sbjct: 56 ITSRA---------------AVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSP 100
Query: 123 DIAYGVD 129
DIA GV
Sbjct: 101 DIAQGVH 107
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 106 bits (267), Expect = 3e-24
Identities = 44/124 (35%), Positives = 59/124 (47%), Gaps = 24/124 (19%)
Query: 3 ADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVA 62
A LFTSESVSEGHPDKI D+ISD ++D + + ++ RVACE V V+V
Sbjct: 1 AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKA-------RVACETYVKTGMVLVG 53
Query: 63 GEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQ 120
GE+ E++ R+ +R IGY GF + V + Q
Sbjct: 54 GEITTSA---------------WVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQ 98
Query: 121 SSDI 124
S DI
Sbjct: 99 SPDI 102
>d2o9ux1 d.17.1.1 (X:1001-1096) Monellin, B & A chains together
{Serendipity berry (Dioscoreophyllum cumminsii) [TaxId:
3457]}
Length = 96
Score = 30.4 bits (68), Expect = 0.25
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 79 GQYVVDKEK---------FEKVVRSVIRSIGYEQEGFHWETVDVEVLLHSQSSDIAYGVD 129
G++ VD+E F KV+R ++ YE EGF E E L+ +SD + D
Sbjct: 16 GKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFR-EIKGYEYQLYVYASDKLFRAD 74
Query: 130 NASDDCSTLG 139
S+D T G
Sbjct: 75 -ISEDYKTRG 83
>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces
viridochromogenes [TaxId: 1938]}
Length = 249
Score = 28.1 bits (62), Expect = 1.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 290 GKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQ 323
GK AA AAR L + + A G A C I+
Sbjct: 119 GKPS---YLEAAQAARRLRERLTAEGGALPCAIR 149
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain
{Thermoanaerobacterium saccharolyticum [TaxId: 28896]}
Length = 346
Score = 27.0 bits (58), Expect = 2.7
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 113 VEVLLHSQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTL 172
+L ++ SD G+ + +P P +Y + +
Sbjct: 286 ARILSEGGDYVDSFSYWTFSDVFEERDVPRSQFHGGFGLV-ALNMIPKPTFYTFKFFNAM 344
Query: 173 AD 174
+
Sbjct: 345 GE 346
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 392
Score = 26.8 bits (59), Expect = 3.0
Identities = 4/11 (36%), Positives = 9/11 (81%)
Query: 158 MPAPIYYAHRI 168
+PA ++Y+ +I
Sbjct: 361 LPATVHYSDKI 371
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 316
Score = 26.9 bits (59), Expect = 3.1
Identities = 2/11 (18%), Positives = 5/11 (45%)
Query: 158 MPAPIYYAHRI 168
+P + Y +
Sbjct: 295 LPVTVNYPKLV 305
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase
{Desulfovibrio gigas [TaxId: 879]}
Length = 597
Score = 26.9 bits (58), Expect = 3.2
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 281 SPHGGGAFSGKDITKVDRAAAYAARYLAK 309
+ GG F K + A AA +
Sbjct: 104 ANPMGGTFGYKFSPTSEALVAVAAMATGR 132
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
{Pyrococcus furiosus [TaxId: 2261]}
Length = 447
Score = 26.8 bits (59), Expect = 3.4
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 159 PAPIYYAHRI 168
PAP++YAH+
Sbjct: 415 PAPVHYAHKF 424
>d1ylia1 d.38.1.1 (A:11-152) Putative acyl-coa thioester hydrolase
HI0827 {Haemophilus influenzae [TaxId: 727]}
Length = 142
Score = 26.5 bits (58), Expect = 3.8
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 283 HGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHD 342
G F G ++++D A A+ +A V + ++G + +
Sbjct: 20 ANGDIFGGWIMSQMDMGGAILAKEIAHGRVVTVAVESMNFIKPISVGDV--VCCYGQCLK 77
Query: 343 SGKVSESCVANAINKVMDLSVSGIRDHLN 371
G+ S K + G R +
Sbjct: 78 VGRSSIKIKVEVWVKKVASEPIGERYCVT 106
>d1lwba_ a.133.1.3 (A:) Prokaryotic phospholipase A2 {Streptomyces
violaceoruber [TaxId: 1935]}
Length = 122
Score = 26.5 bits (58), Expect = 4.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 119 SQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACR 152
+QS+ AY D ++D C+ G F AC
Sbjct: 29 NQSAWAAYEFDWSTDLCTQAPDNPFGFPFNTACA 62
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp.
c2-2 [TaxId: 192168]}
Length = 216
Score = 26.3 bits (57), Expect = 4.4
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 99 IGYEQEGFHWETVDVEVLLHSQSSDIAYGVDNASDDCSTLGAGDQ----GI 145
IG + DV L + S+ + V S S L DQ GI
Sbjct: 156 IGVGSGSRLAQEFDVSDALRAGSNLLVVRVHQWSAA-SYLEDQDQWWLPGI 205
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 26.3 bits (57), Expect = 4.5
Identities = 6/23 (26%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 80 QYVVDKEKFEKVVR-SVIRSIGY 101
+ ++ +FE+ V+ S+++S+G+
Sbjct: 142 LWRDNRPEFERQVKLSILKSLGF 164
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.9 bits (56), Expect = 5.7
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 206 VKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDI--KISPDCSWYIN 251
+ IV + + T D +V + + K + D +WY++
Sbjct: 394 AQQIVAEMLSYLETADYSIREEIV-----LKVAILAEKYAVDYTWYVD 436
>d1wu4a1 a.102.1.2 (A:6-381) Xylanase Y {Bacillus halodurans [TaxId:
86665]}
Length = 376
Score = 25.7 bits (56), Expect = 6.6
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 368 DHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEAL 401
+ S P Y Y F AN++ W+
Sbjct: 184 PEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEA 217
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
INMT {Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 25.4 bits (54), Expect = 7.7
Identities = 17/135 (12%), Positives = 30/135 (22%), Gaps = 2/135 (1%)
Query: 144 GIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKV 203
F RE + A+ + A + G + K + ++ V
Sbjct: 79 LSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVL--K 136
Query: 204 CEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFVIGGPCS 263
C+V P D +E + + + P G V
Sbjct: 137 CDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196
Query: 264 DAGLTGRKIIVDTYG 278
K
Sbjct: 197 LPSYMVGKREFSCVA 211
>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase
{Bacteriophage PHI-6 [TaxId: 10879]}
Length = 664
Score = 25.4 bits (55), Expect = 9.0
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 18/68 (26%)
Query: 354 AINKVMDLSVSGIRDHLNLSRPIYAQT-------------SAYGH--FGRSANQDGFFPW 398
A+N + +R + S+ YA T + ++ D F+P
Sbjct: 278 ALNAPIMAVAQPVR-NKIYSK--YAYTFHHTTRLNKEEKVKEWSLCVATDVSDHDTFWPG 334
Query: 399 EALDLIEP 406
DLI
Sbjct: 335 WLRDLICD 342
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,564,686
Number of extensions: 72559
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 26
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)