HHsearch alignment for GI: 254780424 and conserved domain: COG4800

>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription].

Probab=96.34  E-value=0.011  Score=37.33  Aligned_cols=52  Identities=17%  Similarity=0.241  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf             99999999999819979999998724699999985289883589999999754
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL   66 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l   66 (144)
T Consensus        16 ~F~~~l~~~l~Elglt~~eFak~anIP~StLYKil~G-~dpr~~tl~~I~kti   67 (170)
T COG4800          16 DFGSCLQKLLDELGLTPSEFAKRANIPLSTLYKILKG-SDPRYDTLTRIFKTI   67 (170)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCHHHHHHHHHHH
T ss_conf             7999999999981999899988709989999999817-996577899999999