HHsearch alignment for GI: 254780424 and conserved domain: PRK12529
>PRK12529 RNA polymerase sigma factor; Provisional.
Probab=91.07 E-value=0.24 Score=28.85 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHC---CC----CCCCHHHHHHHHHHCC
Q ss_conf 99999999999819-9799999987246999999852---89----8835899999997549
Q gi|254780424|r 14 NVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEK---GV----NRVGASRLQHISEVLE 67 (144)
Q Consensus 14 ~iG~rIr~~R~~~g-lTQ~eLA~~lGvs~s~is~~E~---G~----~~ps~~~L~~iA~~l~ 67 (144)
T Consensus 22 h~~~L~~~l~~Rl~~~~~~-~AeDl-~QDvFlrl~~~~~~~~~~~i~~p-~a~L~rIA~Nl~ 80 (178)
T PRK12529 22 NHAWLRNWLAYRLRSWGRG-VADDL-AHDIFLRILASRDGGQREAIRQP-RAYLARIANCVL 80 (178)
T ss_pred HHHHHHHHHHHHHCCCCCC-CHHHH-HHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHH
T ss_conf 9999999999982899835-46999-99999999973444564323348-999999999999