HHsearch alignment for GI: 254780424 and conserved domain: TIGR01950
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR; InterPro: IPR010211 SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulphur cluster activates SoxR. The physiological role in Escherichia coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In Escherichia coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0005506 iron ion binding, 0006118 electron transport, 0006355 regulation of transcription DNA-dependent, 0006979 response to oxidative stress.
Probab=93.04 E-value=0.15 Score=30.17 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCC----------------CCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 979999998724699999985289----------------88358999999975499999950
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGV----------------NRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~----------------~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
T Consensus 2 lTvG~lA~R~GVAVSALHFYE~KGLI~S~Rn~GnQRRy~Rd~LRRVa~Ik~AQ~vGipL~~I~ 64 (142)
T TIGR01950 2 LTVGELAKRAGVAVSALHFYESKGLIHSVRNAGNQRRYKRDVLRRVAVIKVAQRVGIPLAEIA 64 (142)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 861016556557888776541035610113688834232001115674332332589888999