HHsearch alignment for GI: 254780424 and conserved domain: TIGR02959
>TIGR02959 SigZ RNA polymerase sigma factor, SigZ family; InterPro: IPR014304 This entry is a group of RNA polymerase sigma factors where one of the members is designated as SigZ in Bacillus subtilis . This group has a very sporadic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member Dechloromonas aromatica (strain RCB), that appears to have two of these sigma factors. A member of which appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri (strain ATCC 700601 / ES114), where a second one is chromosomally encoded..
Probab=93.27 E-value=0.024 Score=35.20 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=27.6
Q ss_pred HHHHCCCCHHHHHHHHHHHHHH-HHHHHCCCCCC
Q ss_conf 9998199799999987246999-99985289883
Q gi|254780424|r 22 RRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRV 54 (144)
Q Consensus 22 ~R~~~glTQ~eLA~~lGvs~s~-is~~E~G~~~p 54 (144)
T Consensus 111 L~el~G~sQ~e~A~kLGlSlSGaKSRVQRGR~~L 144 (170)
T TIGR02959 111 LTELEGLSQKEIAEKLGLSLSGAKSRVQRGRKKL 144 (170)
T ss_pred HHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 8750799827998761753351567889999999