HHsearch alignment for GI: 254780424 and conserved domain: pfam01381

>pfam01381 HTH_3 Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI.

Probab=99.35  E-value=1.4e-12  Score=100.73  Aligned_cols=55  Identities=29%  Similarity=0.437  Sum_probs=53.6

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             9999998199799999987246999999852898835899999997549999995
Q gi|254780424|r   19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
T Consensus         1 ir~~R~~~g~tq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l   55 (55)
T pfam01381         1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLETLKKLAEALGVSLDEL   55 (55)
T ss_pred             CHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHC
T ss_conf             9898978299899999998969999999987999999999999999978979879