HHsearch alignment for GI: 254780424 and conserved domain: pfam07022
>pfam07022 Phage_CI_repr Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.
Probab=97.99 E-value=2.5e-05 Score=54.33 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=52.7
Q ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf 9999998199-7999999872469999998528988358999999975499999950677443
Q gi|254780424|r 19 IRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 (144)
Q Consensus 19 Ir~~R~~~gl-TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~~ 80 (144)
T Consensus 3 i~Rl~~a~G~~t~~eLA~~LgI~~stis~w~~R~~-~P~e~iv~~~~~tGvsl~WL~~G~G~~ 64 (65)
T pfam07022 3 IERLMKAYGFKSRSELADHLGVSKSTLSTWYKRDS-FPAEWVIRCALETGVSLDWLATGDGEL 64 (65)
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCC-CCHHHHHHHHHHHCCCHHHHHCCCCCC
T ss_conf 99999996888699999996988888999998699-989999999999882999997089999