HHsearch alignment for GI: 254780424 and conserved domain: smart00530
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=99.35 E-value=1.5e-12 Score=100.64 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=54.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99999998199799999987246999999852898835899999997549999995
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
T Consensus 1 rlr~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~~~~~~l 56 (56)
T smart00530 1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDEL 56 (56)
T ss_pred CHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHC
T ss_conf 98999977299999999998959999999997998999999999999988889879