HHsearch results for GI: 254780424 and protein with PDBid: 3bd1_A

>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}

Probab=96.70  E-value=0.0012  Score=42.10  Aligned_cols=48  Identities=21%  Similarity=0.149  Sum_probs=41.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC--CCHHHHHCC
Q ss_conf             9799999987246999999852898835899999997549--999995067
Q gi|254780424|r   28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE--SPISFFFDV   76 (144)
Q Consensus        28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~--v~~~~l~~~   76 (144)
                      =+|.+||+.+|||+++|++|-+|. .++.+....|+++.+  |+..+|...
T Consensus        12 G~q~~lAr~lGVsq~aVs~W~~~~-~vP~~~~~~Ie~aT~g~Vt~~eLrPD   61 (79)
T 3bd1_A           12 GSVSALAASLGVRQSAISNWRARG-RVPAERCIDIERVTNGAVICRELRPD   61 (79)
T ss_dssp             SSHHHHHHHHTCCHHHHHHHHHHT-CCCGGGHHHHHHHTTTSSCHHHHCTT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf             899999999299999999998469-99999999999997895319984955