HHSEARCH alignment of GI: 254780424 and SCOP domain: d1au7a2

Alignment

Probab=95.72  E-value=0.014  Score=33.80  Aligned_cols=50  Identities=18%  Similarity=0.403  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             9999999999981997999999872------469999998528988358999999975
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISEV   65 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lG------vs~s~is~~E~G~~~ps~~~L~~iA~~   65 (144)
                      +..+..|..|..+|+||.+++..+|      .|+++|+++|+=.  .|...+.++--+
T Consensus         7 ~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~--LS~kn~~klkPi   62 (72)
T d1au7a2           7 QFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQ--LSFKNACKLKAI   62 (72)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTC--SBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCC--CCHHHHHHHHHH
T ss_conf             99999998774268629999999998618655503778888515--479889988999

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: POU-specific domain
domain: Pit-1
species: Rat (Rattus norvegicus) [TaxId: 10116]