HHSEARCH alignment of GI: 254780424 and SCOP domain: d1hlva1

Alignment

Probab=92.68  E-value=0.048  Score=30.38  Aligned_cols=38  Identities=8%  Similarity=0.093  Sum_probs=30.2

Q ss_pred             HHHHHHHHHH-HCC--CCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999-819--9799999987246999999852898
Q gi|254780424|r   15 VGKRIRLRRM-ILG--MSQEKLGECLGITFQQVQKYEKGVN   52 (144)
Q Consensus        15 iG~rIr~~R~-~~g--lTQ~eLA~~lGvs~s~is~~E~G~~   52 (144)
                      +.++++-++. +.|  ++|.++|...||+.+||+.|-+.+.
T Consensus        10 ~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK~   50 (66)
T d1hlva1          10 FREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR   50 (66)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999999999808721099999995997647999998799

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Centromere-binding
domain: DNA-binding domain of centromere binding protein B (CENP-B)
species: Human (Homo sapiens) [TaxId: 9606]