HHSEARCH alignment of GI: 254780424 and SCOP domain: d1ic8a2

Alignment
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.35  E-value=0.021  Score=32.67  Aligned_cols=49  Identities=8%  Similarity=0.100  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             9999999999981997999999872469999998528988358999999
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI   62 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i   62 (144)
                      .+-+-||.+=...+++|.++|+..|+|.|+||+|-++...++..+-..|
T Consensus        28 ~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~g~~M~~~KR~al   76 (94)
T d1ic8a2          28 RVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAAL   76 (94)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             9999999999986885999999980159999999827998517999999


SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: POU-specific domain
domain: Hepatocyte nuclear factor 1a (LFB1/HNF1)
species: Human (Homo sapiens) [TaxId: 9606]