HHSEARCH alignment of GI: 254780424 and SCOP domain: d1ijwc_

Alignment

Probab=93.08  E-value=0.048  Score=30.35  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=26.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999998199799999987246999999852
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      +.+|+++ ..|.|..++|..+|||++||.+|--
T Consensus        12 ~~a~~l~-~~G~s~~~iA~~~gVSr~TiYry~p   43 (47)
T d1ijwc_          12 EQISRLL-EKGHPRQQLAIIFGIGVSTLYRYFP   43 (47)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHSC
T ss_pred             HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999999-8899799999997969999985577

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic