HHSEARCH alignment of GI: 254780424 and SCOP domain: d1y9qa1

Alignment

Probab=99.57  E-value=1.6e-15  Score=116.76  Aligned_cols=67  Identities=21%  Similarity=0.327  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             9999999999998199799999987246999999852898835899999997549999995067744
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT   79 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~   79 (144)
                      .+||++||++|+.+||||++||+.+|||+++|++||+|+..|+.+.+.+||++|||+++|||.+.+.
T Consensus         7 ~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~   73 (79)
T d1y9qa1           7 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQ   73 (79)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTSTH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf             9999999999998299999999987711648999986998999999999999989879998389961

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Probable transcriptional regulator VC1968, N-terminal domain
domain: Probable transcriptional regulator VC1968, N-terminal domain
species: Vibrio cholerae [TaxId: 666]