HHSEARCH alignment of GI: 254780424 and SCOP domain: d2o38a1

Alignment
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=99.38  E-value=1.3e-13  Score=104.58  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             999999999999819979999998724699999985289-8835899999997549999995067744
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDVSPT   79 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~~~~~~   79 (144)
                      ..||.+||++|+++||||.++|+++|+++++|++||+|+ ..|++++|.+||++||+++++++...+.
T Consensus        10 ~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~~~~~~~~~L~~ia~~Lg~~i~~~~~~~~~   77 (89)
T d2o38a1          10 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIRKKPR   77 (89)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEEECCT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHEECCCCC
T ss_conf             99999999999995999999999997337089999849978986899999999909988870157876


SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: NE1354
domain: Hypothetical protein RPA3824
species: Rhodopseudomonas palustris [TaxId: 1076]