Query         gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 144
No_of_seqs    111 out of 3925
Neff          8.2 
Searched_HMMs 13730
Date          Wed Jun  1 05:28:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780424.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2b5aa1 a.35.1.3 (A:1-77) Regu  99.6 3.3E-15 2.4E-19  114.7   9.4   70    8-77      2-73  (77)
  2 d2r1jl1 a.35.1.2 (L:3-68) P22   99.6 2.7E-15 1.9E-19  115.3   7.8   64   14-77      3-66  (66)
  3 d1b0na2 a.35.1.3 (A:1-68) SinR  99.6 2.5E-15 1.8E-19  115.4   7.6   65   14-78      1-66  (68)
  4 d1y9qa1 a.35.1.8 (A:4-82) Prob  99.6 1.6E-15 1.1E-19  116.8   6.2   67   13-79      7-73  (79)
  5 d1y7ya1 a.35.1.3 (A:5-73) Rest  99.6   3E-15 2.2E-19  114.9   7.1   62   13-74      8-69  (69)
  6 d2croa_ a.35.1.2 (A:) cro 434   99.5 5.5E-15   4E-19  113.3   6.7   62   14-76      3-64  (65)
  7 d1r69a_ a.35.1.2 (A:) 434 C1 r  99.5 4.6E-15 3.4E-19  113.8   6.2   61   15-76      2-62  (63)
  8 d1utxa_ a.35.1.3 (A:) Putative  99.5 3.2E-15 2.3E-19  114.8   4.3   64   15-78      2-65  (66)
  9 d1lmb3_ a.35.1.2 (3:) lambda C  99.5 3.9E-14 2.8E-18  107.8   7.1   61   15-75     13-73  (87)
 10 d2icta1 a.35.1.3 (A:8-94) Anti  99.5 4.5E-14 3.3E-18  107.4   7.2   61   16-76      3-63  (87)
 11 d1x57a1 a.35.1.12 (A:8-85) End  99.5 1.1E-14   8E-19  111.4   3.9   66   12-77      4-69  (78)
 12 d2ofya1 a.35.1.3 (A:3-84) Puta  99.5 9.9E-14 7.2E-18  105.2   8.4   65   13-79     13-78  (82)
 13 d2o38a1 a.35.1.13 (A:28-116) H  99.4 1.3E-13 9.1E-18  104.6   4.4   67   13-79     10-77  (89)
 14 d2a6ca1 a.35.1.13 (A:1-69) HTH  99.3 1.1E-12 8.1E-17   98.5   5.0   61   14-74      6-67  (69)
 15 d2ppxa1 a.35.1.3 (A:30-91) Unc  99.1 4.9E-11 3.6E-15   88.0   5.7   57   18-75      3-59  (62)
 16 d2auwa1 a.35.1.10 (A:88-154) H  98.8 3.2E-09 2.4E-13   76.3   6.4   43   16-58      3-45  (67)
 17 d2bnma1 a.35.1.3 (A:6-76) Hydr  97.4 0.00017 1.2E-08   46.1   6.5   60   15-74      6-66  (71)
 18 d1dwka1 a.35.1.4 (A:1-86) Cyan  97.1 0.00066 4.8E-08   42.3   6.8   72    1-73      1-72  (86)
 19 d2awia1 a.35.1.11 (A:2-66) Prg  96.8  0.0017 1.3E-07   39.6   6.4   60   15-75      3-62  (65)
 20 d1e3oc2 a.35.1.1 (C:1-75) Oct-  96.3  0.0084 6.2E-07   35.2   7.4   56    7-64      3-65  (75)
 21 d1au7a2 a.35.1.1 (A:5-76) Pit-  95.7   0.014   1E-06   33.8   6.3   50   14-65      7-62  (72)
 22 d2hsga1 a.35.1.5 (A:2-58) Gluc  95.4   0.012 8.5E-07   34.3   4.9   46   27-72      1-49  (57)
 23 d1ic8a2 a.35.1.1 (A:87-180) He  95.3   0.021 1.5E-06   32.7   6.2   49   14-62     28-76  (94)
 24 d1efaa1 a.35.1.5 (A:2-60) Lac   95.2   0.011 7.8E-07   34.5   4.3   45   26-70      1-48  (59)
 25 d1r71a_ a.4.14.1 (A:) Transcri  94.9    0.02 1.5E-06   32.8   5.0   45    8-55     14-58  (114)
 26 d1vz0a1 a.4.14.1 (A:116-208) P  94.9   0.021 1.5E-06   32.7   5.0   40    9-51      4-43  (93)
 27 d1qpza1 a.35.1.5 (A:2-58) Puri  94.7    0.02 1.5E-06   32.8   4.6   43   29-71      2-47  (57)
 28 d1nera_ a.35.1.2 (A:) Ner {Bac  94.6   0.026 1.9E-06   32.1   4.9   56   18-76     13-68  (74)
 29 d1uxda_ a.35.1.5 (A:) Fructose  93.8   0.027   2E-06   32.0   3.6   45   28-72      1-51  (59)
 30 d2ox6a1 a.35.1.6 (A:5-166) Hyp  93.6    0.13 9.3E-06   27.7   6.9   63   18-80      7-79  (162)
 31 d1s4ka_ a.35.1.6 (A:) Putative  93.4   0.089 6.5E-06   28.7   5.7   48   17-64      6-55  (120)
 32 d1ijwc_ a.4.1.2 (C:) HIN recom  93.1   0.048 3.5E-06   30.4   4.0   32   17-49     12-43  (47)
 33 d1hlva1 a.4.1.7 (A:1-66) DNA-b  92.7   0.048 3.5E-06   30.4   3.5   38   15-52     10-50  (66)
 34 d1k78a1 a.4.1.5 (A:19-81) Pax-  92.5   0.097 7.1E-06   28.4   4.9   41    6-49     12-52  (63)
 35 d1jhga_ a.4.12.1 (A:) Trp repr  92.2   0.094 6.8E-06   28.5   4.5   39   14-52     43-83  (101)
 36 d1z05a1 a.4.5.63 (A:10-80) Tra  89.8    0.25 1.8E-05   25.8   4.8   36   13-48      6-41  (71)
 37 d2jn6a1 a.4.1.19 (A:1-89) Unch  89.0    0.12 8.9E-06   27.8   2.7   32   18-49     11-45  (89)
 38 d2ao9a1 a.4.1.17 (A:13-132) Ph  88.3    0.12 8.9E-06   27.8   2.3   29   27-55     36-65  (120)
 39 d1nr3a_ d.236.1.1 (A:) DNA-bin  87.9  0.0057 4.2E-07   36.3  -4.6   46   25-70      3-50  (122)
 40 d1zs4a1 a.35.1.9 (A:4-81) Regu  86.9    0.27   2E-05   25.5   3.4   44   28-73     21-64  (78)
 41 d1z6ra1 a.4.5.63 (A:12-81) Mlc  86.8     0.3 2.2E-05   25.2   3.6   37   13-49      5-41  (70)
 42 d1pdnc_ a.4.1.5 (C:) Paired pr  85.9    0.62 4.5E-05   23.3   4.9   40    7-49     15-54  (123)
 43 d1i5za1 a.4.5.4 (A:138-206) Ca  85.6    0.23 1.6E-05   26.1   2.5   24   26-49     28-51  (69)
 44 d3e5ua1 a.4.5.4 (A:148-227) Ch  84.9    0.27   2E-05   25.6   2.6   23   26-48     29-51  (80)
 45 d1zyba1 a.4.5.4 (A:148-220) Pr  84.6    0.27   2E-05   25.5   2.5   23   26-48     26-48  (73)
 46 d1rp3a2 a.4.13.2 (A:164-234) S  84.6    0.46 3.4E-05   24.1   3.7   33   17-49     27-59  (71)
 47 d1rzsa_ a.35.1.2 (A:) cro p22   84.5    0.25 1.8E-05   25.8   2.3   26   29-56     12-37  (61)
 48 d2gaua1 a.4.5.4 (A:152-232) Tr  84.1    0.26 1.9E-05   25.6   2.3   23   26-48     28-50  (81)
 49 d2cfxa1 a.4.5.32 (A:1-63) Tran  84.1    0.67 4.9E-05   23.0   4.4   35    9-46      4-38  (63)
 50 d1ft9a1 a.4.5.4 (A:134-213) CO  84.0     0.3 2.2E-05   25.2   2.5   23   26-48     29-51  (80)
 51 d2hoea1 a.4.5.63 (A:10-71) N-a  83.7    0.47 3.4E-05   24.0   3.4   29   19-48      5-33  (62)
 52 d2bgca1 a.4.5.4 (A:138-237) Li  83.6     0.3 2.2E-05   25.3   2.4   21   27-47     31-52  (100)
 53 d1biaa1 a.4.5.1 (A:1-63) Bioti  83.5    0.27   2E-05   25.6   2.1   30   18-47     10-39  (63)
 54 d1s7oa_ a.4.13.3 (A:) Hypothet  83.4    0.65 4.7E-05   23.1   4.0   33   17-49     22-54  (106)
 55 d1x2la1 a.35.1.7 (A:9-95) Home  83.3     0.9 6.6E-05   22.2   4.7   37   14-50     13-50  (87)
 56 d3ctaa1 a.4.5.28 (A:5-89) Ta10  83.2    0.78 5.7E-05   22.6   4.4   33   16-48      4-42  (85)
 57 d2csfa1 a.35.1.7 (A:8-95) DNA-  82.9     1.4 9.9E-05   21.1   6.5   57   13-69     13-76  (88)
 58 d1j5ya1 a.4.5.1 (A:3-67) Putat  82.6    0.47 3.4E-05   24.0   3.1   32   17-48     11-43  (65)
 59 d2zcwa1 a.4.5.4 (A:118-199) Tr  82.0    0.39 2.9E-05   24.5   2.5   23   26-48     28-50  (82)
 60 d1gdta1 a.4.1.2 (A:141-183) ga  81.8    0.95 6.9E-05   22.1   4.4   33   17-50      9-41  (43)
 61 d2o4aa1 a.35.1.7 (A:370-452) D  81.8     1.2 8.6E-05   21.5   4.9   38   14-51      5-43  (83)
 62 d2a61a1 a.4.5.28 (A:5-143) Tra  81.3    0.72 5.2E-05   22.8   3.6   31   17-47     34-64  (139)
 63 d2o3fa1 a.4.1.20 (A:1-83) Puta  81.0       1 7.5E-05   21.8   4.3   50   10-59     18-68  (83)
 64 d2d1ha1 a.4.5.50 (A:1-109) Hyp  80.9    0.58 4.2E-05   23.5   3.0   20   28-47     37-56  (109)
 65 d1s7ea2 a.35.1.7 (A:6-85) Hepa  80.5    0.98 7.1E-05   22.0   4.1   54   14-67      6-65  (80)
 66 d2cyya1 a.4.5.32 (A:5-64) Puta  80.1     1.1 8.1E-05   21.6   4.2   35    9-46      2-36  (60)
 67 d2cg4a1 a.4.5.32 (A:4-66) Regu  79.9     1.3 9.5E-05   21.2   4.6   36    8-46      3-38  (63)
 68 d2etha1 a.4.5.28 (A:1-140) Put  78.4    0.92 6.7E-05   22.1   3.4   30   18-47     37-66  (140)
 69 d1xsva_ a.4.13.3 (A:) Hypothet  77.4     1.1 7.8E-05   21.7   3.5   32   17-48     24-55  (106)
 70 d1wh8a_ a.35.1.7 (A:) Homeobox  77.4     1.8 0.00013   20.3   4.7   38   13-50     30-68  (111)
 71 d1or7a1 a.4.13.2 (A:120-187) S  77.3     1.2 8.6E-05   21.5   3.7   32   17-48     24-55  (68)
 72 d1ku3a_ a.4.13.2 (A:) Sigma70   76.8     1.3 9.1E-05   21.3   3.7   33   18-50     15-51  (61)
 73 d1lj9a_ a.4.5.28 (A:) Transcri  76.3    0.79 5.8E-05   22.6   2.6   29   19-47     35-63  (144)
 74 d3broa1 a.4.5.28 (A:3-137) Tra  75.8     1.2 9.1E-05   21.3   3.5   19   28-46     46-64  (135)
 75 d1i1ga1 a.4.5.32 (A:2-61) LprA  75.7     1.1   8E-05   21.7   3.2   29   18-46      8-36  (60)
 76 d1wh6a_ a.35.1.7 (A:) Homeobox  75.3     1.9 0.00014   20.1   4.3   38   13-50     20-58  (101)
 77 d1d1la_ a.35.1.2 (A:) cro lamb  75.2     1.2   9E-05   21.3   3.3   35   19-55      7-41  (61)
 78 d1lnwa_ a.4.5.28 (A:) MexR rep  74.3    0.89 6.5E-05   22.3   2.4   28   20-47     43-70  (141)
 79 d2hr3a1 a.4.5.28 (A:2-146) Pro  73.9     2.5 0.00018   19.3   4.8   19   28-46     50-68  (145)
 80 d2p7vb1 a.4.13.2 (B:546-613) S  73.5    0.97   7E-05   22.0   2.4   25   26-50     24-48  (68)
 81 d1j9ia_ a.6.1.5 (A:) Terminase  73.5    0.54 3.9E-05   23.6   1.1   23   27-49      2-24  (68)
 82 d1jgsa_ a.4.5.28 (A:) Multiple  72.3     1.8 0.00013   20.3   3.5   26   21-46     42-67  (138)
 83 d1q06a_ a.6.1.3 (A:) Transcrip  72.0     1.1   8E-05   21.7   2.4   46   28-73      1-63  (127)
 84 d1z91a1 a.4.5.28 (A:8-144) Org  71.8    0.92 6.7E-05   22.2   2.0   30   18-47     38-67  (137)
 85 d1sfxa_ a.4.5.50 (A:) Hypothet  71.4     2.5 0.00018   19.4   4.1   45   16-73      7-51  (109)
 86 d1etxa_ a.4.1.12 (A:) FIS prot  71.3     2.4 0.00017   19.5   4.0   31   17-47     52-82  (89)
 87 d1r8da_ a.6.1.3 (A:) Multidrug  70.6     1.2 8.4E-05   21.5   2.3   48   27-74      2-66  (109)
 88 d1s3ja_ a.4.5.28 (A:) Putative  70.3     1.3 9.8E-05   21.1   2.6   23  105-128   116-138 (143)
 89 d1umqa_ a.4.1.12 (A:) Photosyn  70.2     2.6 0.00019   19.3   4.0   34   14-47     20-53  (60)
 90 d2fxaa1 a.4.5.28 (A:6-167) Pro  70.0     1.5 0.00011   20.8   2.8   29   19-47     47-75  (162)
 91 d2fbia1 a.4.5.28 (A:5-140) Pro  69.8     1.5 0.00011   20.7   2.8   15   59-73     47-61  (136)
 92 d1a04a1 a.4.6.2 (A:150-216) Ni  69.6     1.6 0.00011   20.7   2.8   26   24-49     18-43  (67)
 93 d1aisb1 a.74.1.2 (B:1108-1205)  69.3     2.9 0.00021   19.0   4.1   12   19-30      9-20  (98)
 94 d2fbha1 a.4.5.28 (A:8-144) Tra  69.2     1.5 0.00011   20.8   2.6   21   27-47     43-63  (137)
 95 d1ku9a_ a.4.5.36 (A:) DNA-bind  69.0     1.1 7.8E-05   21.7   1.8   21   27-47     41-61  (151)
 96 d1ttya_ a.4.13.2 (A:) Sigma70   66.8     1.7 0.00012   20.5   2.4   26   25-50     36-61  (87)
 97 d1z0xa1 a.4.1.9 (A:4-71) Trans  66.6     1.2 8.5E-05   21.5   1.6   42   25-66     21-62  (68)
 98 d1mkma1 a.4.5.33 (A:1-75) Tran  66.1     1.2 8.8E-05   21.4   1.6   30   19-48     11-41  (75)
 99 d2fbqa1 a.4.1.9 (A:2-80) Trans  65.6     0.6 4.3E-05   23.4  -0.0   30   25-54     22-51  (79)
100 d2gfna1 a.4.1.9 (A:4-80) Proba  65.4       1 7.6E-05   21.8   1.2   39   26-64     25-63  (77)
101 d1p4wa_ a.4.6.2 (A:) Transcrip  65.3     2.9 0.00021   19.0   3.4   46   23-68     33-82  (87)
102 d1ub9a_ a.4.5.28 (A:) Hypothet  65.1     2.9 0.00021   18.9   3.4   36    9-47     15-50  (100)
103 d2o7ta1 a.4.1.9 (A:1-78) Trans  64.1     1.9 0.00014   20.2   2.3   26   26-51     26-51  (78)
104 d1fsea_ a.4.6.2 (A:) Germinati  63.4     2.3 0.00017   19.6   2.7   27   24-50     16-42  (67)
105 d2frha1 a.4.5.28 (A:102-216) P  62.9     2.4 0.00017   19.5   2.7   15   59-73     52-66  (115)
106 d1ngra_ a.77.1.2 (A:) p75 low   62.0     3.1 0.00023   18.8   3.1   33   26-59     20-52  (85)
107 d3deua1 a.4.5.28 (A:2-141) Tra  61.8     2.4 0.00018   19.5   2.5   23  105-128   113-135 (140)
108 d1yioa1 a.4.6.2 (A:131-200) Re  61.7     2.5 0.00018   19.3   2.6   26   24-49     24-49  (70)
109 d1r8ea1 a.6.1.3 (A:3-120) Tran  61.6     1.6 0.00012   20.5   1.6   46   28-73      4-67  (118)
110 d2fq4a1 a.4.1.9 (A:9-77) Trans  61.3     2.6 0.00019   19.3   2.6   36   17-52     14-49  (69)
111 d1v7ba1 a.4.1.9 (A:1-74) Trans  61.1       2 0.00015   19.9   2.0   36   24-59     21-56  (74)
112 d2bv6a1 a.4.5.28 (A:5-140) Tra  60.3    0.98 7.2E-05   22.0   0.3   12   59-70     51-62  (136)
113 d2fx0a1 a.4.1.9 (A:4-76) Hemol  59.4       3 0.00022   18.9   2.6   31   24-54     21-51  (73)
114 d2i10a1 a.4.1.9 (A:10-78) Puta  58.4     3.1 0.00023   18.7   2.6   36   19-54     12-47  (69)
115 d1rkta1 a.4.1.9 (A:2-82) Hypot  58.2     2.2 0.00016   19.7   1.8   27   46-75     24-50  (81)
116 d1l3la1 a.4.6.2 (A:170-234) Qu  57.9     3.2 0.00024   18.7   2.6   27   24-50     16-42  (65)
117 d1t56a1 a.4.1.9 (A:22-94) Ethr  57.9     1.4 9.9E-05   21.1   0.7   31   25-55     21-51  (73)
118 d2g7sa1 a.4.1.9 (A:3-76) Putat  57.3     2.2 0.00016   19.7   1.7   29   25-53     22-50  (74)
119 d3c07a1 a.4.1.9 (A:15-89) Puta  57.0     3.5 0.00025   18.5   2.6   25   26-50     24-48  (75)
120 d1bl0a1 a.4.1.8 (A:9-62) MarA   56.6     2.1 0.00015   19.9   1.4   25   25-49     17-41  (54)
121 d2hkua1 a.4.1.9 (A:18-87) Puta  56.4     3.5 0.00025   18.5   2.6   25   27-51     20-44  (70)
122 d1jt6a1 a.4.1.9 (A:2-72) Multi  56.0       3 0.00022   18.9   2.2   28   25-52     19-46  (71)
123 d1sfua_ a.4.5.19 (A:) 34L {Yab  56.0     1.8 0.00013   20.3   1.0   38   10-47      5-44  (70)
124 d1jhfa1 a.4.5.2 (A:2-72) LexA   56.0     5.6 0.00041   17.1   5.5   35   13-47      8-45  (71)
125 d1p4xa2 a.4.5.28 (A:126-250) S  55.9     2.1 0.00015   19.8   1.4   15   59-73     52-66  (125)
126 d2np5a1 a.4.1.9 (A:9-77) Trans  55.7     3.2 0.00023   18.7   2.3   29   24-52     18-46  (69)
127 d2id6a1 a.4.1.9 (A:1-75) Trans  54.6     3.3 0.00024   18.6   2.2   50   15-64     11-60  (75)
128 d1ui5a1 a.4.1.9 (A:5-75) A-fac  54.0     4.1  0.0003   18.0   2.6   23   26-48     24-46  (71)
129 d1u2wa1 a.4.5.5 (A:12-119) Cad  53.5     3.9 0.00029   18.1   2.4   22   26-47     44-65  (108)
130 d2vkva1 a.4.1.9 (A:6-67) Tetra  53.4     2.7  0.0002   19.1   1.6   34   21-54     13-46  (62)
131 d2d6ya1 a.4.1.9 (A:7-74) Putat  53.3     3.8 0.00028   18.2   2.4   33   22-54     17-49  (68)
132 d2id3a1 a.4.1.9 (A:13-80) Puta  52.7     3.7 0.00027   18.3   2.2   30   25-54     24-53  (68)
133 d2g3ba1 a.4.1.9 (A:2-73) Putat  51.7     3.5 0.00025   18.5   1.9   28   25-52     20-47  (72)
134 d1hsja1 a.4.5.28 (A:373-487) S  51.6     1.7 0.00013   20.4   0.4   48   16-73     18-65  (115)
135 d2ev0a1 a.4.5.24 (A:2-62) Mang  51.3     6.6 0.00048   16.7   4.0   24   24-47     18-41  (61)
136 d2g7la1 a.4.1.9 (A:16-83) Puta  50.8     1.7 0.00012   20.5   0.2   28   25-52     22-49  (68)
137 d2g7ga1 a.4.1.9 (A:9-73) Putat  50.6       6 0.00044   16.9   3.0   34   21-54     13-46  (65)
138 d1zk8a1 a.4.1.9 (A:6-77) Trans  50.3     4.6 0.00033   17.7   2.4   25   23-47     19-43  (72)
139 d2hyja1 a.4.1.9 (A:8-82) Putat  50.2     2.5 0.00018   19.4   1.0   37   24-60     22-58  (75)
140 d1pb6a1 a.4.1.9 (A:14-85) Hypo  50.2     3.9 0.00028   18.2   2.0   34   25-58     22-55  (72)
141 d1vi0a1 a.4.1.9 (A:6-77) Hypot  49.8     3.7 0.00027   18.3   1.9   35   25-59     19-53  (72)
142 d1ntca_ a.4.1.12 (A:) DNA-bind  49.5     5.7 0.00041   17.1   2.7   29   18-46     55-83  (91)
143 d1rp3a1 a.4.13.1 (A:87-163) Si  49.3     7.1 0.00052   16.5   4.7   35   15-49     12-48  (77)
144 d2gena1 a.4.1.9 (A:6-75) Proba  49.3     4.5 0.00032   17.8   2.2   26   26-51     19-44  (70)
145 d1ulya_ a.4.5.58 (A:) Hypothet  48.0     5.4 0.00039   17.2   2.4   23   25-47     30-52  (190)
146 d2oi8a1 a.4.1.9 (A:8-86) Putat  47.9     2.9 0.00021   19.0   1.1   21   27-47     29-49  (79)
147 d1d5ya1 a.4.1.8 (A:3-56) Rob t  46.7     2.5 0.00018   19.3   0.6   23   25-47     17-39  (54)
148 d1d2za_ a.77.1.2 (A:) Pelle de  46.3     7.9 0.00058   16.2   3.8   45   30-74     28-75  (102)
149 d2isya1 a.4.5.24 (A:2-64) Iron  46.2     7.9 0.00058   16.2   3.9   23   25-47     21-43  (63)
150 d2fbka1 a.4.5.28 (A:8-179) Tra  45.9       1 7.6E-05   21.8  -1.5   15   59-73     82-96  (172)
151 d1hw1a1 a.4.5.6 (A:5-78) Fatty  45.2     5.6 0.00041   17.1   2.2   32   15-46     12-46  (74)
152 d1r1ta_ a.4.5.5 (A:) SmtB repr  44.3     7.8 0.00056   16.2   2.8   23   25-47     34-56  (98)
153 d1g2ha_ a.4.1.12 (A:) Transcri  41.8     9.3 0.00067   15.7   3.2   33   14-47     21-53  (61)
154 d3bwga1 a.4.5.6 (A:5-82) Trans  41.8     6.6 0.00048   16.7   2.1   33   14-46      6-41  (78)
155 d1pufb_ a.4.1.1 (B:) pbx1 {Hum  41.6     6.6 0.00048   16.7   2.1   21   53-73     28-48  (73)
156 d2p4wa1 a.4.5.64 (A:1-194) Tra  41.3       9 0.00066   15.8   2.7   28   20-48     22-49  (194)
157 d1sgma1 a.4.1.9 (A:5-77) Putat  40.7     3.5 0.00026   18.4   0.6   24   24-47     19-42  (73)
158 d1le8a_ a.4.1.1 (A:) Mating ty  40.2     6.5 0.00047   16.7   1.9   23   51-73     19-41  (53)
159 d1ig7a_ a.4.1.1 (A:) Msx-1 hom  39.1     6.8  0.0005   16.6   1.8   23   51-73     22-44  (58)
160 d1x2na1 a.4.1.1 (A:6-67) Homeo  39.0     7.6 0.00055   16.3   2.1   21   53-73     29-49  (62)
161 d1e0ga_ d.7.1.1 (A:) Membrane-  38.0     4.5 0.00033   17.7   0.8   23   55-77      9-31  (48)
162 d1jgga_ a.4.1.1 (A:) Even-skip  37.9     8.8 0.00064   15.9   2.3   23   51-73     21-43  (57)
163 d1t33a1 a.4.1.9 (A:1-88) Putat  37.1     9.3 0.00068   15.7   2.3   24   47-74     26-49  (88)
164 d1p4xa1 a.4.5.28 (A:1-125) Sta  36.2     2.4 0.00017   19.5  -0.9   46   18-73     22-67  (125)
165 d1p7ia_ a.4.1.1 (A:) Engrailed  36.0       9 0.00066   15.8   2.1   22   51-72     21-42  (53)
166 d2hs5a1 a.4.5.6 (A:25-93) Puta  35.8     8.2  0.0006   16.1   1.8   19   28-46     26-44  (69)
167 d1zq3p1 a.4.1.1 (P:2-68) Homeo  35.5      10 0.00074   15.5   2.3   22   51-72     23-44  (67)
168 d1b4aa1 a.4.5.3 (A:4-78) Argin  34.8      12 0.00087   15.0   4.2   42   17-68      5-47  (75)
169 d1e3oc1 a.4.1.1 (C:104-160) Oc  34.4      11 0.00078   15.3   2.2   23   51-73     20-42  (57)
170 d1ftta_ a.4.1.1 (A:) Thyroid t  34.3     9.3 0.00068   15.7   1.9   23   51-73     24-46  (68)
171 d1bw5a_ a.4.1.1 (A:) Insulin g  34.2      10 0.00074   15.5   2.1   26   47-73     22-47  (66)
172 d1fjla_ a.4.1.1 (A:) Paired pr  34.1      10 0.00073   15.5   2.1   23   51-73     24-46  (65)
173 d1vnda_ a.4.1.1 (A:) VND/NK-2   33.9      10 0.00074   15.5   2.1   22   51-72     31-52  (77)
174 d1wi3a_ a.4.1.1 (A:) DNA-bindi  33.8     7.6 0.00055   16.3   1.4   24   50-73     29-52  (71)
175 d2np3a1 a.4.1.9 (A:35-99) Puta  33.5     4.4 0.00032   17.8   0.1   32   23-54     12-43  (65)
176 d2craa1 a.4.1.1 (A:7-64) Homeo  33.4       9 0.00066   15.8   1.7   23   51-73     23-45  (58)
177 d2fd5a1 a.4.1.9 (A:1-76) Proba  33.2     3.4 0.00025   18.5  -0.5   25   47-74     21-45  (76)
178 d1aisb2 a.74.1.2 (B:1206-1300)  33.0      13 0.00092   14.8   2.5   11   20-30      8-18  (95)
179 d2iu5a1 a.4.1.9 (A:1-71) Trans  32.9     3.5 0.00025   18.5  -0.5   27   25-51     24-50  (71)
180 d1au7a1 a.4.1.1 (A:103-160) Pi  32.7      11  0.0008   15.3   2.1   23   51-73     21-43  (58)
181 d2cuea1 a.4.1.1 (A:7-74) Paire  32.3     9.4 0.00068   15.7   1.7   23   51-73     23-45  (68)
182 d1r1ua_ a.4.5.5 (A:) Metal-sen  32.2      13 0.00095   14.8   3.6   23   25-47     29-51  (94)
183 d2e1oa1 a.4.1.1 (A:8-64) Homeo  32.0      11 0.00082   15.2   2.0   23   51-73     22-44  (57)
184 d1k61a_ a.4.1.1 (A:) mat alpha  31.6      11 0.00081   15.2   1.9   21   53-73     25-45  (60)
185 d9anta_ a.4.1.1 (A:) Antennape  31.5      12 0.00086   15.0   2.1   23   51-73     19-41  (56)
186 d1ocpa_ a.4.1.1 (A:) Oct-3 POU  30.2      14   0.001   14.6   2.2   23   51-73     30-52  (67)
187 d2ecba1 a.4.1.1 (A:8-83) Zinc   30.0      11 0.00081   15.2   1.7   26   47-73     23-48  (76)
188 d1b72a_ a.4.1.1 (A:) Homeobox   29.9      13 0.00095   14.8   2.1   41   25-73     31-71  (88)
189 d1yz8p1 a.4.1.1 (P:1-60) Pitui  29.8     9.5  0.0007   15.6   1.3   20   52-71     24-43  (60)
190 d1uhsa_ a.4.1.1 (A:) Homeodoma  29.6      13 0.00097   14.7   2.1   28   46-73     19-46  (72)
191 d1wh7a_ a.4.1.1 (A:) ZF-HD hom  29.0      14   0.001   14.6   2.0   23   51-73     43-65  (80)
192 d1ddfa_ a.77.1.2 (A:) Fas {Hum  28.9     4.2  0.0003   17.9  -0.6   43    9-51      7-50  (127)
193 d1s7ea1 a.4.1.1 (A:103-152) He  28.0     6.5 0.00048   16.7   0.3   22   51-72     20-41  (50)
194 d1v4ra1 a.4.5.6 (A:1-100) Tran  28.0     8.1 0.00059   16.1   0.7   17   29-45     35-51  (100)
195 d2ecca1 a.4.1.1 (A:1-76) Homeo  27.6      14   0.001   14.6   1.9   23   51-73     25-47  (76)
196 d1d4ca3 d.168.1.1 (A:360-505)   27.6      16  0.0011   14.3   2.2   22   53-74     81-102 (146)
197 d1pufa_ a.4.1.1 (A:) Homeobox   26.6      16  0.0012   14.2   2.1   23   51-73     35-57  (77)
198 d2p5ka1 a.4.5.3 (A:2-64) Argin  23.5      19  0.0014   13.8   4.1   31   17-47      7-43  (63)
199 d1y7ma2 d.7.1.1 (A:1-48) Hypot  23.3     4.7 0.00034   17.6  -1.2   24   55-78      8-31  (48)
200 d1y0pa3 d.168.1.1 (A:362-504)   22.3      20  0.0014   13.6   2.2   22   52-73     79-100 (143)
201 d1vola1 a.74.1.2 (A:113-207) T  22.2      20  0.0014   13.6   2.5   13   18-30      8-20  (95)
202 d2esna1 a.4.5.37 (A:3-91) Prob  22.1      20  0.0014   13.6   2.2   31   29-70     22-52  (89)
203 d1rr7a_ a.4.1.14 (A:) Middle o  22.0      20  0.0014   13.6   3.6   13   55-67     27-39  (94)
204 d2oa4a1 a.4.12.3 (A:1-93) Unch  20.9      21  0.0015   13.4   1.8   36   27-62     50-90  (93)
205 d2cqxa1 a.4.1.1 (A:8-66) LAG1   20.5      21  0.0016   13.4   3.6   27   47-73     20-46  (59)

No 1  
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=99.59  E-value=3.3e-15  Score=114.69  Aligned_cols=70  Identities=24%  Similarity=0.419  Sum_probs=64.0

Q ss_pred             CCHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             99899--99999999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r    8 PNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS   77 (144)
Q Consensus         8 ~~~~d--~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~   77 (144)
                      .|.+|  ..+|++||.+|+.+||||++||+.+|||+++|++||+|.+.|+.+.|.+||.+|||++++||...
T Consensus         2 ~~~~~~~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~~   73 (77)
T d2b5aa1           2 INEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKM   73 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf             863899999999999999980999999998979799999999869989999999999999698999985423


No 2  
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=99.57  E-value=2.7e-15  Score=115.29  Aligned_cols=64  Identities=23%  Similarity=0.439  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             9999999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS   77 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~   77 (144)
                      .||++||++|+.+||||.+||+.+|||.++|++||+|...|+.+.+.+||++|+||++||+.++
T Consensus         3 ~ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~Ll~gd   66 (66)
T d2r1jl1           3 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGD   66 (66)
T ss_dssp             CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHHCC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf             9999999999985999999999979899999999869989999999999999698899984679


No 3  
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=99.57  E-value=2.5e-15  Score=115.44  Aligned_cols=65  Identities=23%  Similarity=0.344  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf             999999999998199799999987246999999852898-83589999999754999999506774
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFDVSP   78 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~-~ps~~~L~~iA~~l~v~~~~l~~~~~   78 (144)
                      .||++||++|.++||||.+||+++|||.++|++||+|.+ .|++++|.+||++||||++|||+...
T Consensus         1 ~ig~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~v~~~~l~~~~~   66 (68)
T d1b0na2           1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKH   66 (68)
T ss_dssp             CCHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCCTT
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf             979999999998299999999897979999999985998999999999999998986999839988


No 4  
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=99.57  E-value=1.6e-15  Score=116.76  Aligned_cols=67  Identities=21%  Similarity=0.327  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             9999999999998199799999987246999999852898835899999997549999995067744
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT   79 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~   79 (144)
                      .+||++||++|+.+||||++||+.+|||+++|++||+|+..|+.+.+.+||++|||+++|||.+.+.
T Consensus         7 ~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~   73 (79)
T d1y9qa1           7 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQ   73 (79)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTSTH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf             9999999999998299999999987711648999986998999999999999989879998389961


No 5  
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=99.56  E-value=3e-15  Score=114.93  Aligned_cols=62  Identities=26%  Similarity=0.360  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             99999999999981997999999872469999998528988358999999975499999950
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF   74 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~   74 (144)
                      +.+|++||++|+.+||||++||+.+|+|.++|++||+|+..|++++|.+||++|+|++++||
T Consensus         8 ~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~lF   69 (69)
T d1y7ya1           8 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
T ss_conf             99999999999983999999986829989899999879999999999999999695999979


No 6  
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=99.54  E-value=5.5e-15  Score=113.30  Aligned_cols=62  Identities=26%  Similarity=0.330  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV   76 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~   76 (144)
                      .||+|||++|+.+||||++||+.+|||+++|++||+|.+.|+ +.|.+||++|+|+++||+.|
T Consensus         3 ~i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~~~~-~~l~~ia~~l~v~~~~Ll~G   64 (65)
T d2croa_           3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYG   64 (65)
T ss_dssp             SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSC-TTHHHHHHHTTSCHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCH-HHHHHHHHHHCCCHHHHHHC
T ss_conf             899999999998499999999997867949998787799999-99999999969989998338


No 7  
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=99.53  E-value=4.6e-15  Score=113.78  Aligned_cols=61  Identities=21%  Similarity=0.458  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             99999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r   15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV   76 (144)
Q Consensus        15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~   76 (144)
                      ||+|||.+|+.+||||++||+.+|||.++|++||+|++ |+.+.|.+||++|||+++||+.|
T Consensus         2 ig~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~g~~-~~~~~l~~ia~~l~v~~~~l~~G   62 (63)
T d1r69a_           2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNG   62 (63)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC-SSCTTHHHHHHHTTCCHHHHHHC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-CCHHHHHHHHHHHCCCHHHHHHC
T ss_conf             89999999998499699999983739999999878989-49899999999989689998448


No 8  
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=99.52  E-value=3.2e-15  Score=114.78  Aligned_cols=64  Identities=22%  Similarity=0.266  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf             9999999999819979999998724699999985289883589999999754999999506774
Q gi|254780424|r   15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP   78 (144)
Q Consensus        15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~   78 (144)
                      |++|||.+|+.+||||++||.++|||.+++++||+|...|+.+++.+||++||||+++||+..+
T Consensus         2 i~~ri~~lR~~~g~tq~elA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~lf~~~~   65 (66)
T d1utxa_           2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQP   65 (66)
T ss_dssp             EEECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEEECC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf             8999999999859999999886355798999998699899999999999997987999829899


No 9  
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=99.47  E-value=3.9e-14  Score=107.83  Aligned_cols=61  Identities=20%  Similarity=0.301  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf             9999999999819979999998724699999985289883589999999754999999506
Q gi|254780424|r   15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD   75 (144)
Q Consensus        15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~   75 (144)
                      +|+.|+..|+++||||++||+++|+|.++|++||+|.+.|+.+.|.+||++|+||+++|+.
T Consensus        13 l~~~i~~~R~~~gltq~~lA~~lgis~~~is~~E~g~~~~s~~~l~~ia~~l~v~~~~~~~   73 (87)
T d1lmb3_          13 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP   73 (87)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHCH
T ss_conf             9999999999939999999988672288899998114787599999999998979999874


No 10 
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=99.47  E-value=4.5e-14  Score=107.42  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             9999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r   16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV   76 (144)
Q Consensus        16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~   76 (144)
                      |++||++|+.+||||.+||+.+|||+++|++||+|++.|+.+.+.+||++|||+++|+++.
T Consensus         3 Ge~lke~r~~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~kla~~lgvs~~~~L~l   63 (87)
T d2icta1           3 GDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNL   63 (87)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf             7999999998699999999997246999999998501798999999999989199999821


No 11 
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.47  E-value=1.1e-14  Score=111.37  Aligned_cols=66  Identities=21%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             999999999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r   12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS   77 (144)
Q Consensus        12 d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~   77 (144)
                      +..||++||.+|+.+||||++||+.+|||.++|++||+|...|+.+.|.+||.+|||++.++..+.
T Consensus         4 ~~~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~G~~~p~~~~l~~la~~l~v~l~~~~~~~   69 (78)
T d1x57a1           4 TLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGK   69 (78)
T ss_dssp             CCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTTTTC
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             489999999999985997267887188789999999806779999999999999099664565789


No 12 
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=99.46  E-value=9.9e-14  Score=105.24  Aligned_cols=65  Identities=20%  Similarity=0.217  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             999999999999819979999998724699999985289-8835899999997549999995067744
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDVSPT   79 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~~~~~~   79 (144)
                      ..||++||.+|+  |+||.+||+++|||.++|++||+|+ ..|++++|.+||++|||++++|+.....
T Consensus        13 ~~lG~~ir~~R~--~~t~~eLA~~~Gvs~~~ls~iE~G~~~~ps~~tl~kia~~L~v~~~~Ll~~~~~   78 (82)
T d2ofya1          13 QRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTF   78 (82)
T ss_dssp             HHHHHHHHHHHT--TSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTCCC
T ss_pred             HHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCC
T ss_conf             999999999998--079999998971799999999829867888999999999989889999855478


No 13 
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=99.38  E-value=1.3e-13  Score=104.58  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             999999999999819979999998724699999985289-8835899999997549999995067744
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDVSPT   79 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~~~~~~   79 (144)
                      ..||.+||++|+++||||.++|+++|+++++|++||+|+ ..|++++|.+||++||+++++++...+.
T Consensus        10 ~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~~~~~~~~~L~~ia~~Lg~~i~~~~~~~~~   77 (89)
T d2o38a1          10 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIRKKPR   77 (89)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEEECCT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHEECCCCC
T ss_conf             99999999999995999999999997337089999849978986899999999909988870157876


No 14 
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=99.29  E-value=1.1e-12  Score=98.49  Aligned_cols=61  Identities=16%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             99999999999819979999998724699999985289-88358999999975499999950
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF   74 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~   74 (144)
                      .+|.+|+.+|+.+||||++||+.+||++++||+||+|+ .+|+.++|.+||++||++++..+
T Consensus         6 ~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~g~~~~~s~~~L~~ia~~Lg~~i~~~~   67 (69)
T d2a6ca1           6 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINI   67 (69)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999999969999999999874784799997665201008999999999199707651


No 15 
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=99.10  E-value=4.9e-11  Score=87.96  Aligned_cols=57  Identities=16%  Similarity=0.233  Sum_probs=50.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf             9999999819979999998724699999985289883589999999754999999506
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD   75 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~   75 (144)
                      +||.+|+.+||||++||+.+|||.++|++||+|++.|+...+..++ .+...|+.++.
T Consensus         3 ~ik~~R~~~gltQ~elA~~lGvs~~tvs~~E~G~~~P~~~~~~ll~-~l~~~Pe~v~~   59 (62)
T d2ppxa1           3 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLK-IIAVDPEGTAA   59 (62)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHH-HHHHCHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH-HHHCCHHHHHH
T ss_conf             8899999969999999999698999999887798899999999999-98669999999


No 16 
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=98.82  E-value=3.2e-09  Score=76.31  Aligned_cols=43  Identities=16%  Similarity=0.091  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             9999999998199799999987246999999852898835899
Q gi|254780424|r   16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR   58 (144)
Q Consensus        16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~   58 (144)
                      +++++++|+.+||||++||+.+|||+.+|++||+|.+.++...
T Consensus         3 ~e~~k~~R~~~gltQ~elA~~LGvs~~ti~~yE~G~r~iP~~v   45 (67)
T d2auwa1           3 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTI   45 (67)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf             8999999999599999999995998999999986999999899


No 17 
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=97.44  E-value=0.00017  Score=46.08  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             999999999981997999999872469999998528-988358999999975499999950
Q gi|254780424|r   15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF   74 (144)
Q Consensus        15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G-~~~ps~~~L~~iA~~l~v~~~~l~   74 (144)
                      ..+++|+.|.+..|.-..||..+|-++.++..||+| .-..++..|-+||.+||.++..|.
T Consensus         6 fae~lk~rreqvkmdhaalas~lgetpetvaawengeggeltltqlg~ia~~lgtsigalt   66 (71)
T d2bnma1           6 FAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALT   66 (71)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCC
T ss_conf             8999999999971119999999768906788863588750529998889999714412327


No 18 
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.14  E-value=0.00066  Score=42.29  Aligned_cols=72  Identities=14%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             9987668998999999999999998199799999987246999999852898835899999997549999995
Q gi|254780424|r    1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus         1 ~~~~~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      |++-+-.+++. ..+-+.|-..+.++|||-+++|+.+|.|..++.....|....+.+.-.++|+.|+.|.+..
T Consensus         1 m~~~~~~~~~r-~~lte~Il~AK~~kgltw~~IA~~iG~s~vwvtaa~lGQ~~l~~~~A~~l~~~L~L~~e~~   72 (86)
T d1dwka1           1 MIQSQINRNIR-LDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSI   72 (86)
T ss_dssp             CCCBCSCHHHH-HHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred             CCHHHCCCCHH-HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf             95312044269-9999999999998399899999895988999999984578899999999999749999999


No 19 
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=96.79  E-value=0.0017  Score=39.61  Aligned_cols=60  Identities=18%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf             9999999999819979999998724699999985289883589999999754999999506
Q gi|254780424|r   15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD   75 (144)
Q Consensus        15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~   75 (144)
                      ||.-+|++|+++++.|-+|-..+ +|++.+-++|-..+.++.+.|.++++.|||+.-.++.
T Consensus         3 ig~~lkqir~elnyhqidlysgi-msksiyikveadsrpisveel~kfserlginffeil~   62 (65)
T d2awia1           3 IGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILN   62 (65)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf             00699999998445675887512-2012699984488864499999899983763999987


No 20 
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.30  E-value=0.0084  Score=35.20  Aligned_cols=56  Identities=16%  Similarity=0.377  Sum_probs=41.0

Q ss_pred             CCCHHHHH-HHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             89989999-999999999981997999999872------46999999852898835899999997
Q gi|254780424|r    7 IPNPVDIN-VGKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISE   64 (144)
Q Consensus         7 ~~~~~d~~-iG~rIr~~R~~~glTQ~eLA~~lG------vs~s~is~~E~G~~~ps~~~L~~iA~   64 (144)
                      .|++-+.. ..+..|..|..+|+||.+++..+|      .|+++|+++|+=.  .|...+.++--
T Consensus         3 ~~~l~Ele~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~--LS~kn~~kLkP   65 (75)
T d1e3oc2           3 PSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN--LSFKNMSKLKP   65 (75)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTC--SCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_conf             8989999999999998788436558999999998717502588999999724--57988998899


No 21 
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=95.72  E-value=0.014  Score=33.80  Aligned_cols=50  Identities=18%  Similarity=0.403  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             9999999999981997999999872------469999998528988358999999975
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISEV   65 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lG------vs~s~is~~E~G~~~ps~~~L~~iA~~   65 (144)
                      +..+..|..|..+|+||.+++..+|      .|+++|+++|+=.  .|...+.++--+
T Consensus         7 ~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~--LS~kn~~klkPi   62 (72)
T d1au7a2           7 QFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQ--LSFKNACKLKAI   62 (72)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTC--SBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCC--CCHHHHHHHHHH
T ss_conf             99999998774268629999999998618655503778888515--479889988999


No 22 
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=95.36  E-value=0.012  Score=34.30  Aligned_cols=46  Identities=13%  Similarity=0.091  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHCCCCHHH
Q ss_conf             99799999987246999999852898835899999---99754999999
Q gi|254780424|r   27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH---ISEVLESPISF   72 (144)
Q Consensus        27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~---iA~~l~v~~~~   72 (144)
                      +.|..++|+.+|||.+|+|++-+|....+.++-.+   .++.||--++.
T Consensus         1 NvTi~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV~~aa~~lgY~pn~   49 (57)
T d2hsga1           1 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNA   49 (57)
T ss_dssp             CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf             9699999989895999999996898867989999999999998869799


No 23 
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.35  E-value=0.021  Score=32.67  Aligned_cols=49  Identities=8%  Similarity=0.100  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             9999999999981997999999872469999998528988358999999
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI   62 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i   62 (144)
                      .+-+-||.+=...+++|.++|+..|+|.|+||+|-++...++..+-..|
T Consensus        28 ~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~g~~M~~~KR~al   76 (94)
T d1ic8a2          28 RVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAAL   76 (94)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             9999999999986885999999980159999999827998517999999


No 24 
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=95.21  E-value=0.011  Score=34.53  Aligned_cols=45  Identities=16%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHCCCCH
Q ss_conf             1997999999872469999998528988358999999---97549999
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI---SEVLESPI   70 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i---A~~l~v~~   70 (144)
                      +..|..++|+..|||.+++|++-+|...++.++-.+|   |+-||--+
T Consensus         1 k~~Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~rI~~~a~~lgY~p   48 (59)
T d1efaa1           1 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIP   48 (59)
T ss_dssp             CCCCHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHHHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             988899999897979999999977998679999999999999988986


No 25 
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=94.90  E-value=0.02  Score=32.76  Aligned_cols=45  Identities=9%  Similarity=0.070  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             998999999999999998199799999987246999999852898835
Q gi|254780424|r    8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG   55 (144)
Q Consensus         8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps   55 (144)
                      -+|+|  .+.-++.+- ..|+|++++|+++|+|.++|+++-.=...|.
T Consensus        14 L~p~e--~A~a~~~l~-~~g~s~~eiA~~~G~s~~~V~~~l~L~~lp~   58 (114)
T d1r71a_          14 LTPRE--IADFIGREL-AKGKKKGDIAKEIGKSPAFITQHVTLLDLPE   58 (114)
T ss_dssp             CCHHH--HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHGGGSCCH
T ss_pred             CCHHH--HHHHHHHHH-HHCCCHHHHHHHHCCCHHHHHHHHHHHCCCH
T ss_conf             99999--999999998-8099899999997772999999999967999


No 26 
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=94.86  E-value=0.021  Score=32.67  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9899999999999999819979999998724699999985289
Q gi|254780424|r    9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV   51 (144)
Q Consensus         9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~   51 (144)
                      |||+.  +.-.+.+- +.|+||+++|+++|.|+++|++.-+=.
T Consensus         4 ~piEe--A~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~LrLl   43 (93)
T d1vz0a1           4 SPVEE--ARGYQALL-EMGLTQEEVARRVGKARSTVANALRLL   43 (93)
T ss_dssp             CHHHH--HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred             CHHHH--HHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             89999--99999999-849999999999851469999999899


No 27 
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=94.73  E-value=0.02  Score=32.80  Aligned_cols=43  Identities=9%  Similarity=0.020  Sum_probs=33.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHCCCCHH
Q ss_conf             799999987246999999852898835899999---9975499999
Q gi|254780424|r   29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQH---ISEVLESPIS   71 (144)
Q Consensus        29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~---iA~~l~v~~~   71 (144)
                      |..++|+..|||.+++|++-+|...++.++-.+   +++-||--++
T Consensus         2 Ti~dvA~~agVS~sTVSr~ln~~~~vs~~tr~rV~~~a~~lgY~pn   47 (57)
T d1qpza1           2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPS   47 (57)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             8999999989599999999779985689999999999999888979


No 28 
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=94.57  E-value=0.026  Score=32.06  Aligned_cols=56  Identities=13%  Similarity=0.023  Sum_probs=44.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             99999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV   76 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~   76 (144)
                      -|+..=..+|+|..+|+...|++.+++.+.-..   |...-=..||++||+++..++..
T Consensus        13 dI~AaL~krG~sLa~lsr~~gls~stl~naL~r---p~pKgEriIA~aLg~~P~eIWPs   68 (74)
T d1nera_          13 DVIAGLKKRKLSLSALSRQFGYAPTTLANALER---HWPKGEQIIANALETKPEVIWPS   68 (74)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTTS---SCHHHHHHHHHHTTSCHHHHSTT
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHCCCHHHHCCC
T ss_conf             999999996887999999909987899999837---78589999999978598895944


No 29 
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=93.77  E-value=0.027  Score=31.98  Aligned_cols=45  Identities=7%  Similarity=0.084  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCC------CCHHHHHHHHHHCCCCHHH
Q ss_conf             97999999872469999998528988------3589999999754999999
Q gi|254780424|r   28 MSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPISF   72 (144)
Q Consensus        28 lTQ~eLA~~lGvs~s~is~~E~G~~~------ps~~~L~~iA~~l~v~~~~   72 (144)
                      +|..++|+.+|||.+|+|++-||...      -+.+.+...|+.||-.++.
T Consensus         1 vTl~diA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~   51 (59)
T d1uxda_           1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA   51 (59)
T ss_dssp             CCHHHHHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCS
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf             979999999796999999998499876757999999999999998879699


No 30 
>d2ox6a1 a.35.1.6 (A:5-166) Hypothetical protein SO3848 {Shewanella oneidensis [TaxId: 70863]}
Probab=93.64  E-value=0.13  Score=27.66  Aligned_cols=63  Identities=19%  Similarity=0.335  Sum_probs=45.6

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHCCCC-------HHHHHCCCCCC
Q ss_conf             999999981997999999872469999998528988358---9999999754999-------99950677443
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA---SRLQHISEVLESP-------ISFFFDVSPTV   80 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~---~~L~~iA~~l~v~-------~~~l~~~~~~~   80 (144)
                      .|+.+|..+|||.+++|+..+.|..-+-.||.|....+.   ..|..|-++....       +..||...+..
T Consensus         7 e~~ylr~slglt~aqv~~l~k~se~dv~aweage~~~~~laqkklleide~iemqvlnt~dgieelfkkepkr   79 (162)
T d2ox6a1           7 EMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPELAQKKLLDIDDIIEMQVLNTTDGIEALFKKEPKR   79 (162)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf             7999999707789998887455777755355057767527786450188888887752142199997418430


No 31 
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}
Probab=93.37  E-value=0.089  Score=28.66  Aligned_cols=48  Identities=17%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             9999999981997999999872--46999999852898835899999997
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISE   64 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lG--vs~s~is~~E~G~~~ps~~~L~~iA~   64 (144)
                      --|..+|+..-||-+|-|.-++  ++..+.++||+|...+..+.+..+..
T Consensus         6 ~ELQalR~if~mti~EaA~~I~~~~~s~tWQqWE~Gd~~IP~~Vi~~l~~   55 (120)
T d1s4ka_           6 LELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE   55 (120)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             99999999999759999999965766899999874898998999999999


No 32 
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=93.08  E-value=0.048  Score=30.35  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=26.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999998199799999987246999999852
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      +.+|+++ ..|.|..++|..+|||++||.+|--
T Consensus        12 ~~a~~l~-~~G~s~~~iA~~~gVSr~TiYry~p   43 (47)
T d1ijwc_          12 EQISRLL-EKGHPRQQLAIIFGIGVSTLYRYFP   43 (47)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHSC
T ss_pred             HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999999-8899799999997969999985577


No 33 
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.68  E-value=0.048  Score=30.38  Aligned_cols=38  Identities=8%  Similarity=0.093  Sum_probs=30.2

Q ss_pred             HHHHHHHHHH-HCC--CCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999-819--9799999987246999999852898
Q gi|254780424|r   15 VGKRIRLRRM-ILG--MSQEKLGECLGITFQQVQKYEKGVN   52 (144)
Q Consensus        15 iG~rIr~~R~-~~g--lTQ~eLA~~lGvs~s~is~~E~G~~   52 (144)
                      +.++++-++. +.|  ++|.++|...||+.+||+.|-+.+.
T Consensus        10 ~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK~   50 (66)
T d1hlva1          10 FREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR   50 (66)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999999999808721099999995997647999998799


No 34 
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.46  E-value=0.097  Score=28.41  Aligned_cols=41  Identities=22%  Similarity=0.139  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             68998999999999999998199799999987246999999852
Q gi|254780424|r    6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus         6 ~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      ..|-++|  +=+||=++= +.|+|..++|++++||.+++++|-+
T Consensus        12 GrPls~D--LR~Riv~~~-~~G~s~r~aA~rf~VS~s~v~k~l~   52 (63)
T d1k78a1          12 GRPLPDV--VRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILG   52 (63)
T ss_dssp             TSCCCHH--HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCCHH--HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9859999--999999999-9599899999995977999999999


No 35 
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=92.21  E-value=0.094  Score=28.51  Aligned_cols=39  Identities=26%  Similarity=0.459  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHH-HCC-CCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999-819-9799999987246999999852898
Q gi|254780424|r   14 NVGKRIRLRRM-ILG-MSQEKLGECLGITFQQVQKYEKGVN   52 (144)
Q Consensus        14 ~iG~rIr~~R~-~~g-lTQ~eLA~~lGvs~s~is~~E~G~~   52 (144)
                      .+++|++-++. ..| +||.++|+.+|||..||++.-+--.
T Consensus        43 ~la~R~~ia~~L~~G~~s~reI~~~~gvs~aTItR~s~~Lk   83 (101)
T d1jhga_          43 ALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLK   83 (101)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999999999990896799999996987577889999987


No 36 
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=89.76  E-value=0.25  Score=25.80  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999819979999998724699999985
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      .+.+.-++.+|..-.+|..|||+.+|+|.++++++-
T Consensus         6 ~N~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l   41 (71)
T d1z05a1           6 INAGRVYKLIDQKGPISRIDLSKESELAPASITKIT   41 (71)
T ss_dssp             HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             999999999998599489999999887887899999


No 37 
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=89.00  E-value=0.12  Score=27.77  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=25.5

Q ss_pred             HHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999---8199799999987246999999852
Q gi|254780424|r   18 RIRLRRM---ILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        18 rIr~~R~---~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      +...++.   .-|+|..++|..+||+.++|.+|-+
T Consensus        11 K~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k   45 (89)
T d2jn6a1          11 KRDAVALYENSDGASLQQIANDLGINRVTLKNWII   45 (89)
T ss_dssp             HHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999982998599999997989889999999


No 38 
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=88.26  E-value=0.12  Score=27.76  Aligned_cols=29  Identities=17%  Similarity=0.322  Sum_probs=22.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH-CCCCCCC
Q ss_conf             9979999998724699999985-2898835
Q gi|254780424|r   27 GMSQEKLGECLGITFQQVQKYE-KGVNRVG   55 (144)
Q Consensus        27 glTQ~eLA~~lGvs~s~is~~E-~G~~~ps   55 (144)
                      .=||+++|+.+|||+.++.+|- +++..+.
T Consensus        36 kktqeqiAeelGisr~tLyrWrt~dk~FI~   65 (120)
T d2ao9a1          36 KRTQDEMANELGINRTTLWEWRTKNQDFIA   65 (120)
T ss_dssp             CCCHHHHHHHHTCCHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHCCHHHHH
T ss_conf             414999999958018889887606626999


No 39 
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=87.92  E-value=0.0057  Score=36.28  Aligned_cols=46  Identities=26%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCC-HHHHHHHHHHCCCCH
Q ss_conf             81997999999872469999998528-98835-899999997549999
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKG-VNRVG-ASRLQHISEVLESPI   70 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G-~~~ps-~~~L~~iA~~l~v~~   70 (144)
                      ++||||+|.|+.+|.|++.||.+|+. ..++. ...=.++.+.++-|+
T Consensus         3 ~kGltQ~eIA~~LgTSraNIs~IEk~A~eNIekAr~Tl~~~~~l~Ap~   50 (122)
T d1nr3a_           3 ERGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPV   50 (122)
T ss_dssp             CCSCSSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCE
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             256779999999776588999999999999999999999999668988


No 40 
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=86.88  E-value=0.27  Score=25.55  Aligned_cols=44  Identities=18%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             9799999987246999999852898835899999997549999995
Q gi|254780424|r   28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      +-|..+|..+||..++||+|-+|.- |....+..+-+ .||.-+.+
T Consensus        21 ~Gq~k~A~amGv~esqiSRwK~~f~-~q~smlLAvLE-~GV~D~em   64 (78)
T d1zs4a1          21 LGTEKTAEAVGVDKSQISRWKRDWI-PKFSMLLAVLE-WGVVDDDM   64 (78)
T ss_dssp             HCHHHHHHHHTSCHHHHHHHHHHTH-HHHHHHHHHHT-TCCCHHHH
T ss_pred             HCCHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHH-HCCCCHHH
T ss_conf             7204689993998999989987068-89999999999-65670899


No 41 
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=86.79  E-value=0.3  Score=25.24  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999998199799999987246999999852
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      .+.+.=++.+|..-.+|..+||+.+|+|.++++++-+
T Consensus         5 ~N~~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~   41 (70)
T d1z6ra1           5 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVH   41 (70)
T ss_dssp             HHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8999999999994992899999998949999999999


No 42 
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=85.94  E-value=0.62  Score=23.26  Aligned_cols=40  Identities=18%  Similarity=0.152  Sum_probs=31.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8998999999999999998199799999987246999999852
Q gi|254780424|r    7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus         7 ~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      .|=++|  +=++|=++- +.|+++.++|.++|||.+++++|-+
T Consensus        15 rpLs~d--lR~rIv~~~-~~G~s~r~iA~~~~VS~~tV~k~l~   54 (123)
T d1pdnc_          15 RPLPNN--IRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILN   54 (123)
T ss_dssp             SCCCHH--HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCHH--HHHHHHHHH-HHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             179899--999999999-8048999999998969999999999


No 43 
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=85.59  E-value=0.23  Score=26.06  Aligned_cols=24  Identities=17%  Similarity=0.448  Sum_probs=20.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             199799999987246999999852
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      ..+||+++|..+|+|+.++++.-+
T Consensus        28 l~lt~~~lA~~~G~sRetvsr~L~   51 (69)
T d1i5za1          28 IKITRQEIGQIVGCSRETVGRILK   51 (69)
T ss_dssp             EECCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             178999999897997999999999


No 44 
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=84.94  E-value=0.27  Score=25.55  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             19979999998724699999985
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      ..+||++||..+|+|+.++++.-
T Consensus        29 ~~lt~~elA~~~g~sretvsr~l   51 (80)
T d3e5ua1          29 MPLSQKSIGEITGVHHVTVSRVL   51 (80)
T ss_dssp             SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHH
T ss_conf             37999999999887788999999


No 45 
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=84.59  E-value=0.27  Score=25.55  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             19979999998724699999985
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      ..+||+++|+.+|+|+.++++.-
T Consensus        26 i~lt~~elA~~lg~sr~tvsr~l   48 (73)
T d1zyba1          26 FKVKMDDLARCLDDTRLNISKTL   48 (73)
T ss_dssp             EECCHHHHHHHHTSCHHHHHHHH
T ss_pred             EECCHHHHHHHHCCCHHHHHHHH
T ss_conf             50699999989798899999999


No 46 
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=84.57  E-value=0.46  Score=24.06  Aligned_cols=33  Identities=9%  Similarity=0.127  Sum_probs=27.0

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999998199799999987246999999852
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      +.+=.+|--.|+|++|+|+.+|+|.+++.+.-.
T Consensus        27 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~   59 (71)
T d1rp3a2          27 KLVIQLIFYEELPAKEVAKILETSVSRVSQLKA   59 (71)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999986848999999997989999999999


No 47 
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=84.47  E-value=0.25  Score=25.80  Aligned_cols=26  Identities=19%  Similarity=0.232  Sum_probs=22.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             7999999872469999998528988358
Q gi|254780424|r   29 SQEKLGECLGITFQQVQKYEKGVNRVGA   56 (144)
Q Consensus        29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~   56 (144)
                      ++..+|+.+|||+++|++|  |..-|..
T Consensus        12 ~~~k~A~algis~~AVsqW--Ge~VPe~   37 (61)
T d1rzsa_          12 TQRAVAKALGISDAAVSQW--KEVIPEK   37 (61)
T ss_dssp             SHHHHHHHHTCCHHHHHHC--CSBCCHH
T ss_pred             CHHHHHHHHCCCHHHHHHH--HCCCCHH
T ss_conf             7999999969989999988--6307698


No 48 
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=84.14  E-value=0.26  Score=25.62  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             19979999998724699999985
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      ..+||.+||..+|+|+.++++.-
T Consensus        28 ~~lt~~eLA~~~G~sretvsr~L   50 (81)
T d2gaua1          28 IYLSREELATLSNMTVSNAIRTL   50 (81)
T ss_dssp             CCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHH
T ss_conf             06899999999799899999999


No 49 
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=84.09  E-value=0.67  Score=23.03  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=28.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             98999999999999998199799999987246999999
Q gi|254780424|r    9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK   46 (144)
Q Consensus         9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~   46 (144)
                      +.+|..   =|..+....-+|+.++|+.+|+|.+++++
T Consensus         4 D~~D~~---IL~~L~~n~r~s~~~iA~~lgis~~tv~~   38 (63)
T d2cfxa1           4 DQIDLN---IIEELKKDSRLSMRELGRKIKLSPPSVTE   38 (63)
T ss_dssp             CHHHHH---HHHHHHHCSCCCHHHHHHHHTCCHHHHHH
T ss_pred             CHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             899999---99999983999999999998968789999


No 50 
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=83.98  E-value=0.3  Score=25.24  Aligned_cols=23  Identities=13%  Similarity=0.218  Sum_probs=20.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             19979999998724699999985
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      ..+||+++|..+|+|+.++++.-
T Consensus        29 ~~~t~~eiA~~lG~sretvsr~l   51 (80)
T d1ft9a1          29 VDFTVEEIANLIGSSRQTTSTAL   51 (80)
T ss_dssp             ECCCHHHHHHHHCSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             37899999999798899999999


No 51 
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=83.70  E-value=0.47  Score=24.01  Aligned_cols=29  Identities=24%  Similarity=0.224  Sum_probs=24.8

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999819979999998724699999985
Q gi|254780424|r   19 IRLRRMILGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      |+.+|+ ..+|..|||+.+|+|.++++++-
T Consensus         5 l~~i~~-~pisr~eLa~~~gls~~TVs~~v   33 (62)
T d2hoea1           5 LKRIMK-SPVSRVELAEELGLTKTTVGEIA   33 (62)
T ss_dssp             HHHHHH-SCBCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHH-CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             999997-89699999999893999999999


No 52 
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=83.65  E-value=0.3  Score=25.26  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.3

Q ss_pred             CCCHHHHHHHHHHH-HHHHHHH
Q ss_conf             99799999987246-9999998
Q gi|254780424|r   27 GMSQEKLGECLGIT-FQQVQKY   47 (144)
Q Consensus        27 glTQ~eLA~~lGvs-~s~is~~   47 (144)
                      .+||+|||..+|+| +.++++.
T Consensus        31 ~lTqeeLA~~lG~s~ReTVsR~   52 (100)
T d2bgca1          31 NLTMQELGYSSGIAHSSAVSRI   52 (100)
T ss_dssp             CCCHHHHHHHTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHH
T ss_conf             6699999988387448899999


No 53 
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=83.52  E-value=0.27  Score=25.56  Aligned_cols=30  Identities=33%  Similarity=0.248  Sum_probs=24.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999981997999999872469999998
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      -|..+....-+|.++||+.+|||+.+|.+.
T Consensus        10 iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~   39 (63)
T d1biaa1          10 LIALLANGEFHSGEQLGETLGMSRAAINKH   39 (63)
T ss_dssp             HHHHHTTSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999999789587999999989399999999


No 54 
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=83.42  E-value=0.65  Score=23.12  Aligned_cols=33  Identities=15%  Similarity=0.028  Sum_probs=27.6

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999998199799999987246999999852
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      +.+=.+|---|||++|+|+.+|||.+++...-.
T Consensus        22 R~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~   54 (106)
T d1s7oa_          22 MNYIELYYADDYSLAEIADEFGVSRQAVYDNIK   54 (106)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999898999199999999998969999999999


No 55 
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.31  E-value=0.9  Score=22.21  Aligned_cols=37  Identities=11%  Similarity=0.238  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC
Q ss_conf             999999999998199799999987-2469999998528
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKG   50 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G   50 (144)
                      .|-++|++.-+..+++|.-||+.+ |.|+.++|.+-+.
T Consensus        13 ~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdLL~~   50 (87)
T d1x2la1          13 EIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILAR   50 (87)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHC
T ss_conf             99999999999949879999999983084789999848


No 56 
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=83.20  E-value=0.78  Score=22.61  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=25.4

Q ss_pred             HHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998------19979999998724699999985
Q gi|254780424|r   16 GKRIRLRRMI------LGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        16 G~rIr~~R~~------~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      +.-|++++..      -++|+.+||+.+|+++++++++-
T Consensus         4 ~~~l~~l~~~~~~~~~~~lt~~eLa~~l~i~~~~vs~~l   42 (85)
T d3ctaa1           4 YRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRII   42 (85)
T ss_dssp             HHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             999999998260158999889999999887887899999


No 57 
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.95  E-value=1.4  Score=21.07  Aligned_cols=57  Identities=12%  Similarity=0.022  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCCC------HHHHHHHHHHCCCC
Q ss_conf             9999999999998199799999987-246999999852898835------89999999754999
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVG------ASRLQHISEVLESP   69 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~~~ps------~~~L~~iA~~l~v~   69 (144)
                      ..|.++|++.=+..+++|+-||+.+ |.|+.++|.+-+..-.|+      .+++.++-+.|+-|
T Consensus        13 ~~Ia~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrkpkp~~~~~~sg~e~~~rm~~wL~lP   76 (88)
T d2csfa1          13 AAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLP   76 (88)
T ss_dssp             THHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCH
T ss_conf             9999999999999497799999999831807799998089995223177889999999998174


No 58 
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=82.57  E-value=0.47  Score=24.02  Aligned_cols=32  Identities=19%  Similarity=0.149  Sum_probs=25.3

Q ss_pred             HHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999819-979999998724699999985
Q gi|254780424|r   17 KRIRLRRMILG-MSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        17 ~rIr~~R~~~g-lTQ~eLA~~lGvs~s~is~~E   48 (144)
                      +-|..++...+ +|-.+||+.+|||..||.+.=
T Consensus        11 ~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi   43 (65)
T d1j5ya1          11 SIVRILERSKEPVSGAQLAEELSVSRQVIVQDI   43 (65)
T ss_dssp             HHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             999999985997859999999798999999999


No 59 
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=82.02  E-value=0.39  Score=24.52  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             19979999998724699999985
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      ..+||+++|+.+|+|+.++++.-
T Consensus        28 i~lt~~elA~~lg~sr~tv~r~L   50 (82)
T d2zcwa1          28 LKATHDELAAAVGSVRETVTKVI   50 (82)
T ss_dssp             EECCHHHHHHHHTCCHHHHHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHH
T ss_conf             05899999999898899999999


No 60 
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=81.75  E-value=0.95  Score=22.06  Aligned_cols=33  Identities=12%  Similarity=0.115  Sum_probs=28.9

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999981997999999872469999998528
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG   50 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G   50 (144)
                      ++|++++ ..|+.-.++|..+||+++++.++-+.
T Consensus         9 ~~V~~L~-~~G~gat~IAk~lgI~R~SVYR~L~~   41 (43)
T d1gdta1           9 DAVLNMW-QQGLGASHISKTMNIARSTVYKVINE   41 (43)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999999-94898999999979879999999860


No 61 
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.75  E-value=1.2  Score=21.46  Aligned_cols=38  Identities=13%  Similarity=0.052  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCC
Q ss_conf             999999999998199799999987-24699999985289
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGV   51 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~   51 (144)
                      .|.++|++.=+..+++|+-||+.+ |.|+.++|.+-+..
T Consensus         5 eI~~~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~~p   43 (83)
T d2o4aa1           5 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKE   43 (83)
T ss_dssp             THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf             999999999999497799999999831807799998189


No 62 
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=81.28  E-value=0.72  Score=22.85  Aligned_cols=31  Identities=13%  Similarity=0.025  Sum_probs=17.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999981997999999872469999998
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      .-|..+...-++|+.+||+.+|++++++++.
T Consensus        34 ~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~   64 (139)
T d2a61a1          34 DILQKIYFEGPKRPGELSVLLGVAKSTVTGL   64 (139)
T ss_dssp             HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf             9999999769989999999839881442699


No 63 
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=81.02  E-value=1  Score=21.84  Aligned_cols=50  Identities=12%  Similarity=0.113  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             899999999999999-81997999999872469999998528988358999
Q gi|254780424|r   10 PVDINVGKRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL   59 (144)
Q Consensus        10 ~~d~~iG~rIr~~R~-~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L   59 (144)
                      +-+..|++.|..-.. -..+|-.+||+.+|||.++|.++.+.----.+.-+
T Consensus        18 ~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~   68 (83)
T d2o3fa1          18 PSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDL   68 (83)
T ss_dssp             HHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
T ss_conf             999999999982999998831999999979899899999999589989999


No 64 
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=80.91  E-value=0.58  Score=23.46  Aligned_cols=20  Identities=15%  Similarity=0.351  Sum_probs=11.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q ss_conf             97999999872469999998
Q gi|254780424|r   28 MSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        28 lTQ~eLA~~lGvs~s~is~~   47 (144)
                      +|+.+||+.+|++++++++.
T Consensus        37 ~t~~eLa~~~~i~~~tvs~~   56 (109)
T d2d1ha1          37 ITSEELADIFKLSKTTVENS   56 (109)
T ss_dssp             EEHHHHHHHHTCCHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHH
T ss_conf             88999999988567699999


No 65 
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=80.48  E-value=0.98  Score=21.99  Aligned_cols=54  Identities=11%  Similarity=0.141  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC-----CCCCCHHHHHHHHHHCC
Q ss_conf             999999999998199799999987-2469999998528-----98835899999997549
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKG-----VNRVGASRLQHISEVLE   67 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G-----~~~ps~~~L~~iA~~l~   67 (144)
                      .|-++|++.-+..+++|+-||+.+ |.|+.++|.+-+.     +..+.-+.+.++-+.|+
T Consensus         6 ~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~kPKPW~~l~~gre~y~RM~~wL~   65 (80)
T d1s7ea2           6 EVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQ   65 (80)
T ss_dssp             HHHHHHHHHHTSSCCCHHHHHHHTSSSCSSHHHHHTTSCCTTCCCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHC
T ss_conf             999999999999598799999999743807899988399970321325699999999983


No 66 
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=80.05  E-value=1.1  Score=21.64  Aligned_cols=35  Identities=9%  Similarity=0.160  Sum_probs=27.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             98999999999999998199799999987246999999
Q gi|254780424|r    9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK   46 (144)
Q Consensus         9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~   46 (144)
                      |.+|..   =|+.+...--+|..++|+++|+|.++++.
T Consensus         2 D~~D~~---Il~~L~~n~r~s~~eiA~~l~ls~~~v~~   36 (60)
T d2cyya1           2 DEIDKK---IIKILQNDGKAPLREISKITGLAESTIHE   36 (60)
T ss_dssp             CHHHHH---HHHHHHHCTTCCHHHHHHHHCSCHHHHHH
T ss_pred             CHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             889999---99999982899999999998939999999


No 67 
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=79.90  E-value=1.3  Score=21.17  Aligned_cols=36  Identities=8%  Similarity=0.071  Sum_probs=29.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998999999999999998199799999987246999999
Q gi|254780424|r    8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK   46 (144)
Q Consensus         8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~   46 (144)
                      -+.+|..   =|+.+...-.+|..++|+++|+|.+++..
T Consensus         3 lD~~D~~---IL~~L~~~~r~s~~eiA~~l~ls~~~v~~   38 (63)
T d2cg4a1           3 IDNLDRG---ILEALMGNARTAYAELAKQFGVSPETIHV   38 (63)
T ss_dssp             CCHHHHH---HHHHHHHCTTSCHHHHHHHHTSCHHHHHH
T ss_pred             CCHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             8889999---99999983899999999998939999999


No 68 
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=78.44  E-value=0.92  Score=22.14  Aligned_cols=30  Identities=13%  Similarity=0.076  Sum_probs=20.4

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999981997999999872469999998
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      -|..+-..-++|+.+||+.+|++++++++.
T Consensus        37 iL~~l~~~~~~t~~~La~~l~i~~~~vs~~   66 (140)
T d2etha1          37 AFLYVALFGPKKMKEIAEFLSTTKSNVTNV   66 (140)
T ss_dssp             HHHHHHHHCCBCHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999999869959999999989698799999


No 69 
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=77.41  E-value=1.1  Score=21.72  Aligned_cols=32  Identities=9%  Similarity=0.039  Sum_probs=26.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999819979999998724699999985
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      +.+=.+|-.-|||..|.|+.+|||.+++..--
T Consensus        24 R~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l   55 (106)
T d1xsva_          24 RNYLELFYLEDYSLSEIADTFNVSRQAVYDNI   55 (106)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             99999999908759999999895999999999


No 70 
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.35  E-value=1.8  Score=20.26  Aligned_cols=38  Identities=21%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC
Q ss_conf             9999999999998199799999987-2469999998528
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKG   50 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G   50 (144)
                      ..|.++|++.=+..+++|+-||+.+ |.|+.+++.+-+.
T Consensus        30 ~~Ia~~v~~~L~~~~I~Q~~Fa~~VL~rSQGtlSdLL~~   68 (111)
T d1wh8a_          30 YSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSR   68 (111)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             999999999999858329999999980082789999838


No 71 
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=77.29  E-value=1.2  Score=21.46  Aligned_cols=32  Identities=16%  Similarity=0.150  Sum_probs=26.2

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999819979999998724699999985
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      +.+=.+|--.|+|++|+|+.+|+|.+++...-
T Consensus        24 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l   55 (68)
T d1or7a1          24 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRI   55 (68)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             99999999909899999999894999999999


No 72 
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=76.76  E-value=1.3  Score=21.30  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=25.8

Q ss_pred             HHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999----81997999999872469999998528
Q gi|254780424|r   18 RIRLRRM----ILGMSQEKLGECLGITFQQVQKYEKG   50 (144)
Q Consensus        18 rIr~~R~----~~glTQ~eLA~~lGvs~s~is~~E~G   50 (144)
                      .|=..|-    ...+|+.|+|+.+|||...+.++|+-
T Consensus        15 ~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~~~   51 (61)
T d1ku3a_          15 MVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK   51 (61)
T ss_dssp             HHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999984778999778999889979889999999999


No 73 
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=76.26  E-value=0.79  Score=22.58  Aligned_cols=29  Identities=17%  Similarity=0.134  Sum_probs=17.0

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999981997999999872469999998
Q gi|254780424|r   19 IRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      |..+...-|+||.+||+.+|++++++++.
T Consensus        35 L~~i~~~~~~t~~~la~~l~i~~~tvs~~   63 (144)
T d1lj9a_          35 LVRVCENPGIIQEKIAELIKVDRTTAARA   63 (144)
T ss_dssp             HHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             99998289989999999878247169999


No 74 
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=75.76  E-value=1.2  Score=21.31  Aligned_cols=19  Identities=16%  Similarity=0.104  Sum_probs=11.4

Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q ss_conf             9799999987246999999
Q gi|254780424|r   28 MSQEKLGECLGITFQQVQK   46 (144)
Q Consensus        28 lTQ~eLA~~lGvs~s~is~   46 (144)
                      +||.+||+.+|++++++++
T Consensus        46 it~~ela~~~~~~~~~vs~   64 (135)
T d3broa1          46 VLQRDLESEFSIKSSTATV   64 (135)
T ss_dssp             CBHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHH
T ss_conf             9999999998968868999


No 75 
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=75.71  E-value=1.1  Score=21.66  Aligned_cols=29  Identities=17%  Similarity=0.169  Sum_probs=24.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999998199799999987246999999
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQK   46 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~   46 (144)
                      =|+.+...--+|..++|+.+|+|.+++..
T Consensus         8 Il~~L~~n~r~s~~~lA~~~gls~~~v~~   36 (60)
T d1i1ga1           8 ILEILEKDARTPFTEIAKKLGISETAVRK   36 (60)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             99999884999999999998929999999


No 76 
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.26  E-value=1.9  Score=20.09  Aligned_cols=38  Identities=16%  Similarity=0.312  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC
Q ss_conf             9999999999998199799999987-2469999998528
Q gi|254780424|r   13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKG   50 (144)
Q Consensus        13 ~~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G   50 (144)
                      ..|-++|++.=+..+++|+-||+.+ |.|+.++|.+-+.
T Consensus        20 ~~I~~~v~~eL~~~~IsQ~~Fa~~VL~rSQGtlSdLL~~   58 (101)
T d1wh6a_          20 LELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSR   58 (101)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             999999999999949769999999981081789999847


No 77 
>d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]}
Probab=75.24  E-value=1.2  Score=21.33  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=28.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999998199799999987246999999852898835
Q gi|254780424|r   19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG   55 (144)
Q Consensus        19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps   55 (144)
                      |.++=.+.|  |...|+.+||.+++||+--+-.+++.
T Consensus         7 L~dyv~~~G--QaKaA~~LGv~Q~AIsKAira~R~I~   41 (61)
T d1d1la_           7 LKDYAMRFG--QTKTAKDLGVYQSAINKAIHAGRKIF   41 (61)
T ss_dssp             HHHHHHHHC--HHHHHHHHTCCTHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHC--HHHHHHHCCCCHHHHHHHHHCCCEEE
T ss_conf             999999977--59899982964889999996388279


No 78 
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=74.29  E-value=0.89  Score=22.26  Aligned_cols=28  Identities=14%  Similarity=0.173  Sum_probs=14.4

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999981997999999872469999998
Q gi|254780424|r   20 RLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        20 r~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ..+-..-|+|+.+||+.+|++++++++.
T Consensus        43 ~~l~~~~~~t~~~la~~l~~~~~~vsr~   70 (141)
T d1lnwa_          43 KLIDEQRGLNLQDLGRQMCRDKALITRK   70 (141)
T ss_dssp             HHHHSSTTCBHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999879989999999978457379999


No 79 
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=73.93  E-value=2.5  Score=19.34  Aligned_cols=19  Identities=5%  Similarity=0.127  Sum_probs=9.8

Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q ss_conf             9799999987246999999
Q gi|254780424|r   28 MSQEKLGECLGITFQQVQK   46 (144)
Q Consensus        28 lTQ~eLA~~lGvs~s~is~   46 (144)
                      +|+.+||+.+|++++++++
T Consensus        50 ~t~~~La~~~~~~~~~vs~   68 (145)
T d2hr3a1          50 VTPSELAAAERMRSSNLAA   68 (145)
T ss_dssp             BCHHHHHHHTTCCHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHH
T ss_conf             7999999997989889999


No 80 
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=73.51  E-value=0.97  Score=22.01  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=22.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             1997999999872469999998528
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYEKG   50 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E~G   50 (144)
                      ..+|++++|+.+|||+..|.++|.-
T Consensus        24 ~~~tl~eI~~~lgiSrerVrqie~~   48 (68)
T d2p7vb1          24 TDYTLEEVGKQFDVTRERIRQIEAK   48 (68)
T ss_dssp             SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             8688999999979789999999999


No 81 
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=73.51  E-value=0.54  Score=23.64  Aligned_cols=23  Identities=13%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99799999987246999999852
Q gi|254780424|r   27 GMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        27 glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      .+++.+||+..|||..||.+|=+
T Consensus         2 ~Vnk~~lA~iFGVS~~TI~~W~~   24 (68)
T d1j9ia_           2 EVNKKQLADIFGASIRTIQNWQE   24 (68)
T ss_dssp             EEEHHHHHHHTTCCHHHHHHHTT
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             46899999996998899999998


No 82 
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=72.28  E-value=1.8  Score=20.33  Aligned_cols=26  Identities=12%  Similarity=0.198  Sum_probs=12.4

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99998199799999987246999999
Q gi|254780424|r   21 LRRMILGMSQEKLGECLGITFQQVQK   46 (144)
Q Consensus        21 ~~R~~~glTQ~eLA~~lGvs~s~is~   46 (144)
                      .+-..-++|+.+||+.+|++++++++
T Consensus        42 ~l~~~~~~t~~ela~~~~i~~~~vs~   67 (138)
T d1jgsa_          42 SIRCAACITPVELKKVLSVDLGALTR   67 (138)
T ss_dssp             HHHHHSSBCHHHHHHHHTCCHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             68718098999999997878857999


No 83 
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=72.02  E-value=1.1  Score=21.65  Aligned_cols=46  Identities=15%  Similarity=0.195  Sum_probs=33.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHC-CCCCCCH--------------H--HHHHHHHHCCCCHHHH
Q ss_conf             9799999987246999999852-8988358--------------9--9999997549999995
Q gi|254780424|r   28 MSQEKLGECLGITFQQVQKYEK-GVNRVGA--------------S--RLQHISEVLESPISFF   73 (144)
Q Consensus        28 lTQ~eLA~~lGvs~s~is~~E~-G~~~ps~--------------~--~L~~iA~~l~v~~~~l   73 (144)
                      |+-.|+|+.+|||.+||-.||+ |--.|..              .  .+.+....+|+|+..+
T Consensus         1 m~Ige~A~~~gvs~~TlR~Ye~~GLl~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~sl~eI   63 (127)
T d1q06a_           1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEES   63 (127)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             978999999892999999999927988876577676145199999999999999869999999


No 84 
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=71.83  E-value=0.92  Score=22.16  Aligned_cols=30  Identities=17%  Similarity=0.112  Sum_probs=20.3

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999981997999999872469999998
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      -|..+...-|+||.+||+.+|++++++++.
T Consensus        38 vL~~l~~~~~~t~~~La~~~~i~~~~vsr~   67 (137)
T d1z91a1          38 ALLLLWEHETLTVKKMGEQLYLDSGTLTPM   67 (137)
T ss_dssp             HHHHHHHHSEEEHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999987589998999999979688889799


No 85 
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=71.42  E-value=2.5  Score=19.41  Aligned_cols=45  Identities=18%  Similarity=0.266  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             9999999998199799999987246999999852898835899999997549999995
Q gi|254780424|r   16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      |+-++.++. .|+|-.+..-.       ..-+++|..+     ...||+.+|++....
T Consensus         7 ~~l~~~L~~-lGlt~~e~~v~-------~~L~~~g~~t-----~~eia~~~~i~~~~v   51 (109)
T d1sfxa_           7 GELVKALEK-LSFKPSDVRIY-------SLLLERGGMR-----VSEIARELDLSARFV   51 (109)
T ss_dssp             HHHHHHHHH-TCCCHHHHHHH-------HHHHHHCCBC-----HHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHH-CCCCHHHHHHH-------HHHHHCCCCC-----HHHHHHHHCCCCCHH
T ss_conf             999999998-59999999999-------9988238998-----999999857983559


No 86 
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=71.30  E-value=2.4  Score=19.51  Aligned_cols=31  Identities=10%  Similarity=0.049  Sum_probs=22.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999981997999999872469999998
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ..|+..=..-+..|.+.|+.+|+|++++.+.
T Consensus        52 ~~i~~aL~~~~gn~~~aA~~LGisR~tL~~k   82 (89)
T d1etxa_          52 PLLDMVMQYTRGNATRAALMMGINRGTLRKK   82 (89)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999999992996999999989789999999


No 87 
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=70.63  E-value=1.2  Score=21.53  Aligned_cols=48  Identities=10%  Similarity=0.162  Sum_probs=33.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHC-CCCCCCH--------------HH--HHHHHHHCCCCHHHHH
Q ss_conf             99799999987246999999852-8988358--------------99--9999975499999950
Q gi|254780424|r   27 GMSQEKLGECLGITFQQVQKYEK-GVNRVGA--------------SR--LQHISEVLESPISFFF   74 (144)
Q Consensus        27 glTQ~eLA~~lGvs~s~is~~E~-G~~~ps~--------------~~--L~~iA~~l~v~~~~l~   74 (144)
                      .+|-.|+|+.+|||.++|-.||+ |--.|..              ..  +.+..+.+|+|++.+-
T Consensus         2 ~ytI~e~A~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~~~~l~~I~~lr~~G~sl~eI~   66 (109)
T d1r8da_           2 KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIK   66 (109)
T ss_dssp             CBCHHHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             62299999998969999999988689587655776504562999999999999998699999999


No 88 
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=70.34  E-value=1.3  Score=21.11  Aligned_cols=23  Identities=9%  Similarity=0.252  Sum_probs=10.0

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             998728999999999999999999
Q gi|254780424|r  105 RYFIQIDDVKVRQKIIELVRSIVS  128 (144)
Q Consensus       105 ~~~~~l~~~~~r~~i~~l~~~l~~  128 (144)
                      ..|..+++.+ ...+..+++.+..
T Consensus       116 ~~~~~l~~~e-~~~l~~~l~kl~~  138 (143)
T d1s3ja_         116 RYLSFLTEEE-MLQAAHITAKLAQ  138 (143)
T ss_dssp             HHHTTSCHHH-HHHHHHHHHHHHH
T ss_pred             HHHHCCCHHH-HHHHHHHHHHHHH
T ss_conf             9985899999-9999999999999


No 89 
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=70.21  E-value=2.6  Score=19.29  Aligned_cols=34  Identities=9%  Similarity=-0.000  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999981997999999872469999998
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      .=-+.|...=...|..+.+.|+.+|||++++.+-
T Consensus        20 ~Er~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rk   53 (60)
T d1umqa_          20 VRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRI   53 (60)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999999999996685999999989889999999


No 90 
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=69.97  E-value=1.5  Score=20.76  Aligned_cols=29  Identities=7%  Similarity=0.116  Sum_probs=15.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999981997999999872469999998
Q gi|254780424|r   19 IRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      |..+...-|+|+.++|+.+|++++++++.
T Consensus        47 L~~l~~~~~~t~~~la~~~~l~~~tvs~~   75 (162)
T d2fxaa1          47 LWIAYQLNGASISEIAKFGVMHVSTAFNF   75 (162)
T ss_dssp             HHHHHHHTSEEHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             96521189918999999976994031998


No 91 
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=69.80  E-value=1.5  Score=20.71  Aligned_cols=15  Identities=0%  Similarity=-0.237  Sum_probs=8.6

Q ss_pred             HHHHHHHCCCCHHHH
Q ss_conf             999997549999995
Q gi|254780424|r   59 LQHISEVLESPISFF   73 (144)
Q Consensus        59 L~~iA~~l~v~~~~l   73 (144)
                      ...||+.++++...+
T Consensus        47 ~~~la~~~~i~~~~v   61 (136)
T d2fbia1          47 SYQLANQACILRPSM   61 (136)
T ss_dssp             HHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHCCCHHHH
T ss_conf             999999988789889


No 92 
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=69.58  E-value=1.6  Score=20.66  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.6

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98199799999987246999999852
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      ...|+|..++|+.+|+|..++..+-.
T Consensus        18 l~~G~s~~eIA~~l~iS~~TV~~~~~   43 (67)
T d1a04a1          18 IAQGLPNKMIARRLDITESTVKVHVK   43 (67)
T ss_dssp             HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99679989999997888889999999


No 93 
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=69.28  E-value=2.9  Score=19.01  Aligned_cols=12  Identities=8%  Similarity=0.077  Sum_probs=4.2

Q ss_pred             HHHHHHHCCCCH
Q ss_conf             999999819979
Q gi|254780424|r   19 IRLRRMILGMSQ   30 (144)
Q Consensus        19 Ir~~R~~~glTQ   30 (144)
                      |.++=..+|++.
T Consensus         9 I~~~~~~L~L~~   20 (98)
T d1aisb1           9 LDRITAQLKLPR   20 (98)
T ss_dssp             HHHHHHHHTCCH
T ss_pred             HHHHHHHCCCCH
T ss_conf             999998859699


No 94 
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=69.23  E-value=1.5  Score=20.84  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=12.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             997999999872469999998
Q gi|254780424|r   27 GMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        27 glTQ~eLA~~lGvs~s~is~~   47 (144)
                      |+||.+||+.+|++++++++.
T Consensus        43 ~~t~~~la~~~~~~~~~vs~~   63 (137)
T d2fbha1          43 SPTQRELAQSVGVEGPTLARL   63 (137)
T ss_dssp             CCBHHHHHHHHTCCHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHH
T ss_conf             976999999989789899999


No 95 
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=69.03  E-value=1.1  Score=21.75  Aligned_cols=21  Identities=19%  Similarity=0.105  Sum_probs=12.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             997999999872469999998
Q gi|254780424|r   27 GMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        27 glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ++|+.++|+.+|+|++++++.
T Consensus        41 plt~~ela~~l~vsk~~vs~~   61 (151)
T d1ku9a_          41 PLTISDIMEELKISKGNVSMS   61 (151)
T ss_dssp             CEEHHHHHHHHTCCHHHHHHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHH
T ss_conf             928999999867770249999


No 96 
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=66.78  E-value=1.7  Score=20.51  Aligned_cols=26  Identities=15%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             81997999999872469999998528
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKG   50 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G   50 (144)
                      ...+|+.++|+.+|||+..|.++|.-
T Consensus        36 ~~~~tl~eI~~~lgiSrERVRQie~~   61 (87)
T d1ttya_          36 GKPKTLEEVGQYFNVTRERIRQIEVK   61 (87)
T ss_dssp             SSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99688999999959889999999999


No 97 
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=66.63  E-value=1.2  Score=21.50  Aligned_cols=42  Identities=21%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf             819979999998724699999985289883589999999754
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL   66 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l   66 (144)
                      -.++|-.++|+++|||++++.++=.++...-...+..+.+-+
T Consensus        21 ~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~~~~~~~~   62 (68)
T d1z0xa1          21 LEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHF   62 (68)
T ss_dssp             GGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf             231679999998772656899962999999999999999654


No 98 
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=66.13  E-value=1.2  Score=21.40  Aligned_cols=30  Identities=13%  Similarity=0.162  Sum_probs=23.6

Q ss_pred             HHHHHH-HCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999-819979999998724699999985
Q gi|254780424|r   19 IRLRRM-ILGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        19 Ir~~R~-~~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      |..+.. ..++|..|+|+.+|+++++++++-
T Consensus        11 L~~~a~~~~~~s~~eia~~~~~~~st~~rll   41 (75)
T d1mkma1          11 LDFIVKNPGDVSVSEIAEKFNMSVSNAYKYM   41 (75)
T ss_dssp             HHHHHHCSSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9999857999899999999791999999999


No 99 
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=65.56  E-value=0.6  Score=23.36  Aligned_cols=30  Identities=10%  Similarity=0.030  Sum_probs=18.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             819979999998724699999985289883
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVNRV   54 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~p   54 (144)
                      -.++|-.++|+.+|||++++.+|=.++...
T Consensus        22 ~~~~ti~~Ia~~agvs~~s~y~~F~~K~~l   51 (79)
T d2fbqa1          22 FAETSLRLITSKAGVNLAAVNYHFGSKKAL   51 (79)
T ss_dssp             STTCCHHHHHHHHTSCHHHHHHHTCSHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf             350409999999882855787877699999


No 100
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=65.43  E-value=1  Score=21.80  Aligned_cols=39  Identities=10%  Similarity=0.129  Sum_probs=25.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             199799999987246999999852898835899999997
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE   64 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~   64 (144)
                      .++|-.++|+.+|||++++.+|=.++...-...+.....
T Consensus        25 ~~~s~~~Ia~~agvs~~~lY~~F~~K~~L~~~~~~~~~~   63 (77)
T d2gfna1          25 SAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGD   63 (77)
T ss_dssp             GGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             405799999987888779988883999999999999999


No 101
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=65.27  E-value=2.9  Score=18.99  Aligned_cols=46  Identities=9%  Similarity=0.084  Sum_probs=32.5

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHCCC
Q ss_conf             9981997999999872469999998528----988358999999975499
Q gi|254780424|r   23 RMILGMSQEKLGECLGITFQQVQKYEKG----VNRVGASRLQHISEVLES   68 (144)
Q Consensus        23 R~~~glTQ~eLA~~lGvs~s~is~~E~G----~~~ps~~~L~~iA~~l~v   68 (144)
                      -...|+|-.++|+.+|+|..++..+-+.    ....+...+...|...|+
T Consensus        33 ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~~~~~~~lv~~a~~~gl   82 (87)
T d1p4wa_          33 LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM   82 (87)
T ss_dssp             HHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC
T ss_pred             HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf             99928999999878697999999999999998499999999999999689


No 102
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=65.12  E-value=2.9  Score=18.94  Aligned_cols=36  Identities=14%  Similarity=0.169  Sum_probs=25.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             989999999999999981997999999872469999998
Q gi|254780424|r    9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus         9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ||...+|   +..+-..-++|+.+||+.+|++++++++.
T Consensus        15 ~p~r~~I---L~~L~~~~~~~~~eLa~~l~is~~~vs~~   50 (100)
T d1ub9a_          15 NPVRLGI---MIFLLPRRKAPFSQIQKVLDLTPGNLDSH   50 (100)
T ss_dssp             SHHHHHH---HHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred             CHHHHHH---HHHHCCCCCEEHHHHHHHHHHCCCCCCHH
T ss_conf             9999999---98760479901999999986254323099


No 103
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=64.11  E-value=1.9  Score=20.17  Aligned_cols=26  Identities=12%  Similarity=0.142  Sum_probs=18.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             19979999998724699999985289
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYEKGV   51 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E~G~   51 (144)
                      .++|..++|+++|||++++.+|=.++
T Consensus        26 ~~~t~~~Ia~~agvs~~t~y~~F~sK   51 (78)
T d2o7ta1          26 DSLTMENIAEQAGVGVATLYRNFPDR   51 (78)
T ss_dssp             GGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHCCCH
T ss_conf             40679999988399887999988699


No 104
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=63.44  E-value=2.3  Score=19.58  Aligned_cols=27  Identities=11%  Similarity=0.133  Sum_probs=23.1

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             981997999999872469999998528
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKYEKG   50 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~E~G   50 (144)
                      ...|+|-+|.|+.+|+|.+|+..+-+.
T Consensus        16 ~~~G~s~~eIA~~L~is~~TV~~~~~~   42 (67)
T d1fsea_          16 LVQDKTTKEIASELFISEKTVRNHISN   42 (67)
T ss_dssp             HTTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             983698999999988888899999999


No 105
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=62.93  E-value=2.4  Score=19.51  Aligned_cols=15  Identities=20%  Similarity=0.122  Sum_probs=8.9

Q ss_pred             HHHHHHHCCCCHHHH
Q ss_conf             999997549999995
Q gi|254780424|r   59 LQHISEVLESPISFF   73 (144)
Q Consensus        59 L~~iA~~l~v~~~~l   73 (144)
                      +..||+.++++...+
T Consensus        52 ~~~la~~l~~~~~tv   66 (115)
T d2frha1          52 LKDIINHLNYKQPQV   66 (115)
T ss_dssp             HHHHHHHSSSHHHHH
T ss_pred             HHHHHHHHCCCHHHH
T ss_conf             999999979788689


No 106
>d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=61.98  E-value=3.1  Score=18.76  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=23.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             1997999999872469999998528988358999
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL   59 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L   59 (144)
                      .|-.=+.||.++|++...|..+++.. .|+...|
T Consensus        20 dg~dWr~LA~~LGl~~~~I~~i~~~~-spt~~lL   52 (85)
T d1ngra_          20 NGDTWRHLAGELGYQPEHIDSFTHEA-CPVRALL   52 (85)
T ss_dssp             CTTHHHHHHHHTTCCHHHHHHHHHSS-CHHHHHH
T ss_pred             CCCCHHHHHHHCCCCHHHHHHHHCCC-CHHHHHH
T ss_conf             77879999989397999998987289-8699999


No 107
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=61.80  E-value=2.4  Score=19.47  Aligned_cols=23  Identities=13%  Similarity=0.244  Sum_probs=10.3

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             998728999999999999999999
Q gi|254780424|r  105 RYFIQIDDVKVRQKIIELVRSIVS  128 (144)
Q Consensus       105 ~~~~~l~~~~~r~~i~~l~~~l~~  128 (144)
                      ..+..+++.+ .+.+..+++.+..
T Consensus       113 ~~~~~l~~ee-~~~~~~~L~~i~~  135 (140)
T d3deua1         113 EILAGISSEE-IELLIKLIAKLEH  135 (140)
T ss_dssp             HHHTTCCHHH-HHHHHHHHHHHHH
T ss_pred             HHHHCCCHHH-HHHHHHHHHHHHH
T ss_conf             9994899999-9999999999999


No 108
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=61.75  E-value=2.5  Score=19.34  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=21.9

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98199799999987246999999852
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      ...|+|-.++|..+|+|..|+..+=.
T Consensus        24 l~~G~s~~eIA~~l~iS~~TV~~~~~   49 (70)
T d1yioa1          24 TIRGLMNKQIAGELGIAEVTVKVHRH   49 (70)
T ss_dssp             HTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             98289999999897979999999999


No 109
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=61.63  E-value=1.6  Score=20.53  Aligned_cols=46  Identities=11%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHC-CCCCCCH---------------HH--HHHHHHHCCCCHHHH
Q ss_conf             9799999987246999999852-8988358---------------99--999997549999995
Q gi|254780424|r   28 MSQEKLGECLGITFQQVQKYEK-GVNRVGA---------------SR--LQHISEVLESPISFF   73 (144)
Q Consensus        28 lTQ~eLA~~lGvs~s~is~~E~-G~~~ps~---------------~~--L~~iA~~l~v~~~~l   73 (144)
                      +|-.|+|+.+|||..+|-.||+ |--.|..               ..  ..+..+.+|+|+..+
T Consensus         4 ytI~evA~~~gvs~~tlR~Ye~~GLl~P~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~g~sl~eI   67 (118)
T d1r8ea1           4 YSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEM   67 (118)
T ss_dssp             EEHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             0199999998969999999998588553453699994035488999999999999969999999


No 110
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=61.33  E-value=2.6  Score=19.26  Aligned_cols=36  Identities=11%  Similarity=0.115  Sum_probs=25.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999998199799999987246999999852898
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN   52 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~   52 (144)
                      ..+=.-+--.++|-.++|+++|||++++.+|=.++.
T Consensus        14 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~   49 (69)
T d2fq4a1          14 YELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKA   49 (69)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf             999998392407799999997858879999987999


No 111
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=61.10  E-value=2  Score=19.93  Aligned_cols=36  Identities=11%  Similarity=0.010  Sum_probs=23.0

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             981997999999872469999998528988358999
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL   59 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L   59 (144)
                      --.++|..++|+.+|||++++.++=.++...-...+
T Consensus        21 G~~~~s~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~   56 (74)
T d1v7ba1          21 SLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMH   56 (74)
T ss_dssp             CSTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHH
T ss_conf             956357999998849692238550799999999999


No 112
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=60.31  E-value=0.98  Score=21.96  Aligned_cols=12  Identities=8%  Similarity=0.130  Sum_probs=6.9

Q ss_pred             HHHHHHHCCCCH
Q ss_conf             999997549999
Q gi|254780424|r   59 LQHISEVLESPI   70 (144)
Q Consensus        59 L~~iA~~l~v~~   70 (144)
                      ...||+.++++.
T Consensus        51 ~~~la~~l~~~~   62 (136)
T d2bv6a1          51 VKKVVTELALDT   62 (136)
T ss_dssp             HHHHHHHTTCCT
T ss_pred             HHHHHHHHCCCH
T ss_conf             999999979788


No 113
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=59.45  E-value=3  Score=18.89  Aligned_cols=31  Identities=13%  Similarity=0.160  Sum_probs=24.1

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9819979999998724699999985289883
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKYEKGVNRV   54 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p   54 (144)
                      --.++|-.++|+.+|||++++.+|=.++...
T Consensus        21 G~~~~si~~Ia~~agvs~~~~Y~~F~~K~~L   51 (73)
T d2fx0a1          21 GYEGTSIQEIAKEAKVNVAMASYYFNGKENL   51 (73)
T ss_dssp             CTTTCCHHHHHHHHTSCHHHHHHHHTSHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf             9351769999998784864999888499999


No 114
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=58.36  E-value=3.1  Score=18.73  Aligned_cols=36  Identities=19%  Similarity=0.129  Sum_probs=25.1

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999999819979999998724699999985289883
Q gi|254780424|r   19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV   54 (144)
Q Consensus        19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p   54 (144)
                      +=.-+--.++|-.++|+.+|||++++.+|=.++...
T Consensus        12 lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~L   47 (69)
T d2i10a1          12 LFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDL   47 (69)
T ss_dssp             HHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf             999879062779999998687862998888599999


No 115
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=58.25  E-value=2.2  Score=19.73  Aligned_cols=27  Identities=11%  Similarity=-0.001  Sum_probs=12.9

Q ss_pred             HHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf             985289883589999999754999999506
Q gi|254780424|r   46 KYEKGVNRVGASRLQHISEVLESPISFFFD   75 (144)
Q Consensus        46 ~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~   75 (144)
                      -++.|-...+   +..||+..||+..-|+.
T Consensus        24 ~~~~G~~~~t---i~~Ia~~agvs~~t~Y~   50 (81)
T d1rkta1          24 FKRKGFELTT---MKDVVEESGFSRGGVYL   50 (81)
T ss_dssp             HHHHCSTTCC---HHHHHHHHTSCHHHHHT
T ss_pred             HHHHCCCCCC---HHHHHHHHCCCHHHHHH
T ss_conf             9985925177---99999986949889988


No 116
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=57.90  E-value=3.2  Score=18.66  Aligned_cols=27  Identities=15%  Similarity=0.411  Sum_probs=22.8

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             981997999999872469999998528
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKYEKG   50 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~E~G   50 (144)
                      ...|+|-+|.|+.+|+|.+++..+-+.
T Consensus        16 ~~~G~s~~eIA~~l~iS~~TV~~~~~~   42 (65)
T d1l3la1          16 IAVGKTMEEIADVEGVKYNSVRVKLRE   42 (65)
T ss_dssp             HTTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             993698889999978889999999999


No 117
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=57.87  E-value=1.4  Score=21.05  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=19.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             8199799999987246999999852898835
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVG   55 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps   55 (144)
                      -.++|-.++|+.+|||++++.+|=.++...=
T Consensus        21 ~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~   51 (73)
T d1t56a1          21 LADISVDDLAKGAGISRPTFYFYFPSKEAVL   51 (73)
T ss_dssp             GGGCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHH
T ss_conf             1507799999986988889988884999999


No 118
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=57.33  E-value=2.2  Score=19.70  Aligned_cols=29  Identities=10%  Similarity=0.126  Sum_probs=19.3

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             81997999999872469999998528988
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVNR   53 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~   53 (144)
                      -.|+|..++|+.+|||++++.+|=.++..
T Consensus        22 ~~~~s~~~Ia~~agvs~~~iY~~F~sK~~   50 (74)
T d2g7sa1          22 YNSFSYADISQVVGIRNASIHHHFPSKSD   50 (74)
T ss_dssp             GGGCCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred             CCCCCHHHHHHHHCCCCCHHHHHCCCHHH
T ss_conf             15067999999878184169888839999


No 119
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=57.00  E-value=3.5  Score=18.46  Aligned_cols=25  Identities=12%  Similarity=0.177  Sum_probs=14.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             1997999999872469999998528
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYEKG   50 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E~G   50 (144)
                      .++|-.++|+.+|||++++.+|=.+
T Consensus        24 ~~~t~~~Ia~~agvs~~~~y~~F~~   48 (75)
T d3c07a1          24 DRTTMRAIAQEAGVSVGNAYYYFAG   48 (75)
T ss_dssp             TTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf             4077999999879398799989859


No 120
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=56.56  E-value=2.1  Score=19.90  Aligned_cols=25  Identities=28%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8199799999987246999999852
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      ...+|.++||+.+|+|+++++++=+
T Consensus        17 ~~~~tl~~lA~~~~~s~~~l~r~Fk   41 (54)
T d1bl0a1          17 ESPLSLEKVSERSGYSKWHLQRMFK   41 (54)
T ss_dssp             TSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             7999999999998939999999999


No 121
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=56.38  E-value=3.5  Score=18.46  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=16.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9979999998724699999985289
Q gi|254780424|r   27 GMSQEKLGECLGITFQQVQKYEKGV   51 (144)
Q Consensus        27 glTQ~eLA~~lGvs~s~is~~E~G~   51 (144)
                      |.|-.++|+.+|||++++.+|=.++
T Consensus        20 ~~t~~~Ia~~agvs~~~~Y~~F~~K   44 (70)
T d2hkua1          20 GVPITQICAAAGAHPNQVTYYYGSK   44 (70)
T ss_dssp             TSCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred             CCHHHHHHHHHCCCHHHHHHCCCCH
T ss_conf             7449999988788853687308999


No 122
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=56.05  E-value=3  Score=18.87  Aligned_cols=28  Identities=4%  Similarity=-0.191  Sum_probs=18.2

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8199799999987246999999852898
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVN   52 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~   52 (144)
                      -.++|-.++|+.+|||++++.+|=.++.
T Consensus        19 ~~~~s~~~Ia~~agvs~~~~y~~F~~K~   46 (71)
T d1jt6a1          19 YNATTTGEIVKLSESSKGNLYYHFKTKE   46 (71)
T ss_dssp             TTTCCHHHHHHHTTCCHHHHHHHHSSHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf             1406799999987858759988884999


No 123
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=56.04  E-value=1.8  Score=20.34  Aligned_cols=38  Identities=16%  Similarity=0.058  Sum_probs=26.1

Q ss_pred             HHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             89999--999999999981997999999872469999998
Q gi|254780424|r   10 PVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        10 ~~d~~--iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ..|++  +-+.+-.++...+.|-.+||..+|++++.|++.
T Consensus         5 ~~~i~~lvk~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~   44 (70)
T d1sfua_           5 DAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQ   44 (70)
T ss_dssp             SHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf             8999999999997458777704999999959889898899


No 124
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=56.01  E-value=5.6  Score=17.14  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHCCC--CHHHHHHHHHH-HHHHHHHH
Q ss_conf             9999999999998199--79999998724-69999998
Q gi|254780424|r   13 INVGKRIRLRRMILGM--SQEKLGECLGI-TFQQVQKY   47 (144)
Q Consensus        13 ~~iG~rIr~~R~~~gl--TQ~eLA~~lGv-s~s~is~~   47 (144)
                      ..|=+.|+..-...|.  |.+|+|+.+|+ |.+++..+
T Consensus         8 ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~   45 (71)
T d1jhfa1           8 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH   45 (71)
T ss_dssp             HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf             99999999999982889889999977299999999999


No 125
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=55.85  E-value=2.1  Score=19.82  Aligned_cols=15  Identities=13%  Similarity=0.175  Sum_probs=11.1

Q ss_pred             HHHHHHHCCCCHHHH
Q ss_conf             999997549999995
Q gi|254780424|r   59 LQHISEVLESPISFF   73 (144)
Q Consensus        59 L~~iA~~l~v~~~~l   73 (144)
                      +..||+.++++...+
T Consensus        52 ~~~ia~~l~~~~~~v   66 (125)
T d1p4xa2          52 LKDLIETIHHKYPQT   66 (125)
T ss_dssp             HHHHHHHSSSCHHHH
T ss_pred             HHHHHHHHCCCCCHH
T ss_conf             999999978984249


No 126
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=55.75  E-value=3.2  Score=18.68  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=20.6

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             98199799999987246999999852898
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKYEKGVN   52 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~   52 (144)
                      --.++|-.++|+.+|||++++.+|=.++.
T Consensus        18 G~~~~ti~~Ia~~agvs~~~iy~~F~sK~   46 (69)
T d2np5a1          18 GLEGASVREVAKRAGVSIGAVQHHFSTKD   46 (69)
T ss_dssp             CGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf             91406799999883988879988883999


No 127
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=54.60  E-value=3.3  Score=18.62  Aligned_cols=50  Identities=10%  Similarity=0.092  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             99999999998199799999987246999999852898835899999997
Q gi|254780424|r   15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE   64 (144)
Q Consensus        15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~   64 (144)
                      -+.++=.-.--.++|-.++|+.+|||++++.+|=.++...-.+.+..+..
T Consensus        11 aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~~k~~Ll~~~~~~~~~   60 (75)
T d2id6a1          11 AAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTE   60 (75)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999998393516799999884998889988887999999999999999


No 128
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=53.95  E-value=4.1  Score=17.99  Aligned_cols=23  Identities=9%  Similarity=-0.089  Sum_probs=11.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             19979999998724699999985
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      .+.|-.++|+..|||++++.+|=
T Consensus        24 ~~~si~~Ia~~agvs~~~~y~~F   46 (71)
T d1ui5a1          24 ESTTLSEIVAHAGVTKGALYFHF   46 (71)
T ss_dssp             TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             62679999998794876999898


No 129
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=53.45  E-value=3.9  Score=18.12  Aligned_cols=22  Identities=14%  Similarity=0.226  Sum_probs=15.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             1997999999872469999998
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ..+|-.++|+.+|+|++++|+.
T Consensus        44 ~~~~v~ela~~l~~s~s~vS~H   65 (108)
T d1u2wa1          44 EELCVCDIANILGVTIANASHH   65 (108)
T ss_dssp             SCEEHHHHHHHHTCCHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9914999998885572579999


No 130
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=53.40  E-value=2.7  Score=19.13  Aligned_cols=34  Identities=21%  Similarity=0.176  Sum_probs=26.1

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999819979999998724699999985289883
Q gi|254780424|r   21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV   54 (144)
Q Consensus        21 ~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p   54 (144)
                      .-.--.++|-.++|+++|||++++.++=.++...
T Consensus        13 ~~~G~~~~s~~~Ia~~agvs~~tiy~~F~~K~~L   46 (62)
T d2vkva1          13 NEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRAL   46 (62)
T ss_dssp             HHHHHHHCCHHHHHHHHTSCHHHHHHHSCCHHHH
T ss_pred             HHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf             9839351789999988098888999888799999


No 131
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=53.27  E-value=3.8  Score=18.17  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=24.3

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999819979999998724699999985289883
Q gi|254780424|r   22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRV   54 (144)
Q Consensus        22 ~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p   54 (144)
                      -+--.++|-.++|++.|||++++.++=.++...
T Consensus        17 ~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~l   49 (68)
T d2d6ya1          17 RHGIAGARIDRIAAEARANKQLIYAYYGNKGEL   49 (68)
T ss_dssp             HHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred             HHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf             859250679999988784662898887499999


No 132
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=52.69  E-value=3.7  Score=18.31  Aligned_cols=30  Identities=7%  Similarity=0.010  Sum_probs=19.5

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             819979999998724699999985289883
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVNRV   54 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~p   54 (144)
                      -.++|-.++|+.+|||++++.++=.++...
T Consensus        24 ~~~~t~~~Ia~~agvs~~~iY~~F~~k~~L   53 (68)
T d2id3a1          24 FDALDLGEIARRAGVGKTTVYRRWGTPGGL   53 (68)
T ss_dssp             GGGCCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf             340779999999786887999998599999


No 133
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=51.69  E-value=3.5  Score=18.46  Aligned_cols=28  Identities=18%  Similarity=0.131  Sum_probs=22.2

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8199799999987246999999852898
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVN   52 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~   52 (144)
                      -.+.|-.++|+..|||++++.+|=.++.
T Consensus        20 ~~~~ti~~Ia~~agvs~~~ly~~F~~K~   47 (72)
T d2g3ba1          20 IRGLRVNDVAEVAGVSPGLLYYHFKDRI   47 (72)
T ss_dssp             HHHCCHHHHHHHHTSCHHHHHHHHCSHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf             2407799999885969779998883999


No 134
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=51.59  E-value=1.7  Score=20.42  Aligned_cols=48  Identities=13%  Similarity=0.078  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             9999999998199799999987246999999852898835899999997549999995
Q gi|254780424|r   16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      -+..+...+..|||..++.-..     .+..++.+.     -+...||+.++++...+
T Consensus        18 ~~~~~~~~~~~~Lt~~q~~vL~-----~l~~~~~~~-----~t~~ela~~l~~~~~~v   65 (115)
T d1hsja1          18 KKFFRDTKKKFNLNYEEIYILN-----HILRSESNE-----ISSKEIAKCSEFKPYYL   65 (115)
T ss_dssp             HHHHHHHSSSCCCCHHHHHHHH-----HHHTCSCSE-----EEHHHHHHSSCCCHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHH-----HHHCCCCCC-----CCHHHHHHHHCCCHHHH
T ss_conf             9999998745599999999999-----998068999-----48999999978885359


No 135
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=51.26  E-value=6.6  Score=16.65  Aligned_cols=24  Identities=17%  Similarity=0.051  Sum_probs=19.5

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             981997999999872469999998
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ..-..+..++|+.+|||+++++..
T Consensus        18 ~~~~v~~~~iA~~L~vs~~SVs~m   41 (61)
T d2ev0a1          18 EKGYARVSDIAEALAVHPSSVTKM   41 (61)
T ss_dssp             HHSSCCHHHHHHHHTCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             589750999999958995159999


No 136
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=50.83  E-value=1.7  Score=20.47  Aligned_cols=28  Identities=11%  Similarity=0.120  Sum_probs=19.6

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8199799999987246999999852898
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVN   52 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~   52 (144)
                      -.++|-.++|+++|||++++.++=.++.
T Consensus        22 ~~~~si~~ia~~~gvs~~~~y~hF~~K~   49 (68)
T d2g7la1          22 LEKVTMRRLAQELDTGPASLYVYVANTA   49 (68)
T ss_dssp             SSSCCHHHHHHHTTSCHHHHTTTCCSHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf             0307899999997828767628775999


No 137
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=50.61  E-value=6  Score=16.94  Aligned_cols=34  Identities=18%  Similarity=0.139  Sum_probs=21.9

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999819979999998724699999985289883
Q gi|254780424|r   21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV   54 (144)
Q Consensus        21 ~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p   54 (144)
                      -+...-++|-.++|+.+|||++++..+=.++...
T Consensus        13 l~~~~G~~ti~~Ia~~agvs~~~iY~~F~~K~~L   46 (65)
T d2g7ga1          13 LVDRDGDFRMPDLARHLNVQVSSIYHHAKGRAAV   46 (65)
T ss_dssp             HHHHHSSCCHHHHHHHTTSCHHHHHTTSCHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCCCCHHHCCCCHHHH
T ss_conf             9978679789999988570613131158999999


No 138
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=50.26  E-value=4.6  Score=17.68  Aligned_cols=25  Identities=12%  Similarity=0.191  Sum_probs=12.1

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9981997999999872469999998
Q gi|254780424|r   23 RMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        23 R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      +--.++|-.++|+++|||++++.+|
T Consensus        19 ~G~~~~t~~~Ia~~agvs~~slY~y   43 (72)
T d1zk8a1          19 NGVQEVTLASLAQTLGVRSPSLYNH   43 (72)
T ss_dssp             HCGGGCCHHHHHHHHTSCHHHHTTT
T ss_pred             HCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             6977566999999959799999898


No 139
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=50.17  E-value=2.5  Score=19.41  Aligned_cols=37  Identities=22%  Similarity=0.178  Sum_probs=22.4

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             9819979999998724699999985289883589999
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ   60 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~   60 (144)
                      --.++|-.++|+.+|||++++.+|=.++...-...+.
T Consensus        22 G~~~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~   58 (75)
T d2hyja1          22 GLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLD   58 (75)
T ss_dssp             CGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf             9030769999998890989998888299999999999


No 140
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=50.16  E-value=3.9  Score=18.15  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=23.4

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             8199799999987246999999852898835899
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR   58 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~   58 (144)
                      -.++|-.++|+..|||++++.+|=.++...=...
T Consensus        22 ~~~~ti~~Ia~~agvs~~t~y~~F~~K~~l~~~~   55 (72)
T d1pb6a1          22 FHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAV   55 (72)
T ss_dssp             TTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
T ss_conf             2506799999986978679998886999999999


No 141
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=49.78  E-value=3.7  Score=18.26  Aligned_cols=35  Identities=14%  Similarity=0.082  Sum_probs=23.4

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             81997999999872469999998528988358999
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL   59 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L   59 (144)
                      -.++|-.++|+..|||++++.++=.++...-...+
T Consensus        19 ~~~~ti~~Ia~~agvs~~~~y~~F~~K~~L~~~~~   53 (72)
T d1vi0a1          19 YHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLF   53 (72)
T ss_dssp             GGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf             04155999999879498799888839999999999


No 142
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=49.51  E-value=5.7  Score=17.10  Aligned_cols=29  Identities=7%  Similarity=-0.048  Sum_probs=16.3

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999998199799999987246999999
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQK   46 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~   46 (144)
                      .|+..=..-+..+.+.|+.+|++++|+.+
T Consensus        55 lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~   83 (91)
T d1ntca_          55 LLTTALRHTQGHKQEAARLLGWGAATLTA   83 (91)
T ss_dssp             HHHHHHHHTTTCTTHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf             99999999599599999997988999999


No 143
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=49.27  E-value=7.1  Score=16.46  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999998199--799999987246999999852
Q gi|254780424|r   15 VGKRIRLRRMILGM--SQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus        15 iG~rIr~~R~~~gl--TQ~eLA~~lGvs~s~is~~E~   49 (144)
                      |-+-++.++.++|=  |-+|+|+.+|++...|.+|..
T Consensus        12 i~~a~~~L~~~lGR~Pt~~EiA~~lg~s~~e~~~~l~   48 (77)
T d1rp3a1          12 IKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLD   48 (77)
T ss_dssp             HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999999988697999999997949999999999


No 144
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=49.26  E-value=4.5  Score=17.77  Aligned_cols=26  Identities=8%  Similarity=-0.028  Sum_probs=15.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             19979999998724699999985289
Q gi|254780424|r   26 LGMSQEKLGECLGITFQQVQKYEKGV   51 (144)
Q Consensus        26 ~glTQ~eLA~~lGvs~s~is~~E~G~   51 (144)
                      .++|-.++|+.+|||++++.+|=.++
T Consensus        19 ~~~si~~Ia~~agvs~~t~Y~~F~sK   44 (70)
T d2gena1          19 DATTIEMIRDRSGASIGSLYHHFGNK   44 (70)
T ss_dssp             TTCCHHHHHHHHCCCHHHHHHHTCSH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHCCCH
T ss_conf             40879999998795877999898799


No 145
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=47.99  E-value=5.4  Score=17.24  Aligned_cols=23  Identities=30%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             81997999999872469999998
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ...+|-.|+|+.+|+|++++++.
T Consensus        30 ~~~~s~~ela~~lg~s~~~v~~h   52 (190)
T d1ulya_          30 NKEMTISQLSEILGKTPQTIYHH   52 (190)
T ss_dssp             TCCBCHHHHHHHHTCCHHHHHHH
T ss_pred             HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             19987999999989199999999


No 146
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=47.89  E-value=2.9  Score=18.96  Aligned_cols=21  Identities=14%  Similarity=0.400  Sum_probs=9.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             997999999872469999998
Q gi|254780424|r   27 GMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        27 glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ++|-.++|+.+|||++++.++
T Consensus        29 ~~t~~~Ia~~agvs~~~~Y~~   49 (79)
T d2oi8a1          29 ALSLNAIAKRMGMSGPALYRY   49 (79)
T ss_dssp             SCCHHHHHHHTTCCHHHHHTT
T ss_pred             CCCHHHHHHHHCCCCCCHHHH
T ss_conf             067999999867997744551


No 147
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=46.71  E-value=2.5  Score=19.34  Aligned_cols=23  Identities=13%  Similarity=0.115  Sum_probs=18.4

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             81997999999872469999998
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ...+|.++||+.+|+|++++++.
T Consensus        17 ~~~itl~~lA~~~~~S~~~l~r~   39 (54)
T d1d5ya1          17 DQPLSLDNVAAKAGYSKWHLQRM   39 (54)
T ss_dssp             SSSCCCHHHHTTTSSCHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             89999999999989299999999


No 148
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=46.33  E-value=7.9  Score=16.17  Aligned_cols=45  Identities=11%  Similarity=0.118  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             999999872469999998528---988358999999975499999950
Q gi|254780424|r   30 QEKLGECLGITFQQVQKYEKG---VNRVGASRLQHISEVLESPISFFF   74 (144)
Q Consensus        30 Q~eLA~~lGvs~s~is~~E~G---~~~ps~~~L~~iA~~l~v~~~~l~   74 (144)
                      =+.||.++|++...|..+|..   ...|+...|..-+.--+-++..|+
T Consensus        28 Wr~LA~~Lg~~~~~I~~i~~~~~~~~Spt~~lL~~W~~~~~~Tv~~L~   75 (102)
T d1d2za_          28 WQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLF   75 (102)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf             999999949999999999863467997499999999836898199999


No 149
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=46.19  E-value=7.9  Score=16.15  Aligned_cols=23  Identities=13%  Similarity=0.033  Sum_probs=18.1

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             81997999999872469999998
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ....+..++|+.+|||+++++..
T Consensus        21 ~~~v~~~~iA~~L~vs~~SVt~m   43 (63)
T d2isya1          21 GVTPLRARIAERLDQSGPTVSQT   43 (63)
T ss_dssp             TCCCCHHHHHHHHTCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             89770999999968994439999


No 150
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=45.88  E-value=1  Score=21.79  Aligned_cols=15  Identities=7%  Similarity=-0.148  Sum_probs=9.1

Q ss_pred             HHHHHHHCCCCHHHH
Q ss_conf             999997549999995
Q gi|254780424|r   59 LQHISEVLESPISFF   73 (144)
Q Consensus        59 L~~iA~~l~v~~~~l   73 (144)
                      ...||+.++++...+
T Consensus        82 ~~eLa~~l~i~~~tv   96 (172)
T d2fbka1          82 PTELSALAAISGPST   96 (172)
T ss_dssp             HHHHHHHCSCCSGGG
T ss_pred             HHHHHHHHCCCHHHH
T ss_conf             999999978678579


No 151
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=45.23  E-value=5.6  Score=17.12  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999819--9-799999987246999999
Q gi|254780424|r   15 VGKRIRLRRMILG--M-SQEKLGECLGITFQQVQK   46 (144)
Q Consensus        15 iG~rIr~~R~~~g--l-TQ~eLA~~lGvs~s~is~   46 (144)
                      |-+.|..-+..-|  | |+.+||+.+|||+.++.+
T Consensus        12 i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~   46 (74)
T d1hw1a1          12 IIESIWNNRFPPGTILPAERELSELIGVTRTTLRE   46 (74)
T ss_dssp             HHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             99999849999949983499999998979899999


No 152
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=44.32  E-value=7.8  Score=16.22  Aligned_cols=23  Identities=13%  Similarity=0.221  Sum_probs=18.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             81997999999872469999998
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ...+|-.++|+.+|+|++++|+.
T Consensus        34 ~~~~~v~ela~~l~is~stvS~H   56 (98)
T d1r1ta_          34 RSELCVGDLAQAIGVSESAVSHQ   56 (98)
T ss_dssp             TCCBCHHHHHHHHTCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             19967999999989298899999


No 153
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=41.84  E-value=9.3  Score=15.73  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999981997999999872469999998
Q gi|254780424|r   14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      .=-+.|+..=...| +..+.|+.+||+++++.+-
T Consensus        21 ~Er~~I~~aL~~~g-n~~~aA~~Lgisr~tL~rK   53 (61)
T d1g2ha_          21 YEAQVLKLFYAEYP-STRKLAQRLGVSHTAIANK   53 (61)
T ss_dssp             HHHHHHHHHHHHSC-SHHHHHHHTTSCTHHHHHH
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHH
T ss_conf             99999999999878-9999999979889999999


No 154
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=41.79  E-value=6.6  Score=16.66  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHH--CCC-CHHHHHHHHHHHHHHHHH
Q ss_conf             999999999998--199-799999987246999999
Q gi|254780424|r   14 NVGKRIRLRRMI--LGM-SQEKLGECLGITFQQVQK   46 (144)
Q Consensus        14 ~iG~rIr~~R~~--~gl-TQ~eLA~~lGvs~s~is~   46 (144)
                      +|-..|..-+..  -.| |..+||+..|||++++.+
T Consensus         6 ~i~~~I~~g~l~~G~~LPse~~La~~~~vSr~tvr~   41 (78)
T d3bwga1           6 EIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITK   41 (78)
T ss_dssp             HHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999999849999939993799999998879899999


No 155
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.62  E-value=6.6  Score=16.67  Aligned_cols=21  Identities=5%  Similarity=-0.020  Sum_probs=15.0

Q ss_pred             CCCHHHHHHHHHHCCCCHHHH
Q ss_conf             835899999997549999995
Q gi|254780424|r   53 RVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        53 ~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      -|+.+....||..+|++...+
T Consensus        28 YPs~~~k~~La~~~gl~~~qv   48 (73)
T d1pufb_          28 YPSEEAKEELAKKCGITVSQV   48 (73)
T ss_dssp             CCCHHHHHHHHHHHTSCHHHH
T ss_pred             CCCHHHHHHHHHHHCCCHHHH
T ss_conf             999999999999979399996


No 156
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=41.35  E-value=9  Score=15.80  Aligned_cols=28  Identities=18%  Similarity=0.008  Sum_probs=22.0

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999819979999998724699999985
Q gi|254780424|r   20 RLRRMILGMSQEKLGECLGITFQQVQKYE   48 (144)
Q Consensus        20 r~~R~~~glTQ~eLA~~lGvs~s~is~~E   48 (144)
                      ..++ ..-+|-.+||+.+|+|.+++++.-
T Consensus        22 ~~L~-~~~~~~~ela~~l~~s~~~v~~HL   49 (194)
T d2p4wa1          22 FLLT-KRPYFVSELSRELGVGQKAVLEHL   49 (194)
T ss_dssp             HHHH-HSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHH-HCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9998-089879999999890998999999


No 157
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=40.66  E-value=3.5  Score=18.43  Aligned_cols=24  Identities=4%  Similarity=-0.022  Sum_probs=14.0

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             981997999999872469999998
Q gi|254780424|r   24 MILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        24 ~~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      --.+.|-.++|+..|||++++.++
T Consensus        19 G~~~~si~~Ia~~agvs~~~iy~~   42 (73)
T d1sgma1          19 GYHATGLNQIVKESGAPKGSLYHF   42 (73)
T ss_dssp             CTTTCCHHHHHHHHCCCSCHHHHS
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             924177999999868887799998


No 158
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.20  E-value=6.5  Score=16.72  Aligned_cols=23  Identities=0%  Similarity=-0.068  Sum_probs=16.4

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+....||..+|++...+
T Consensus        19 ~~~P~~~~~~~LA~~lgl~~~qV   41 (53)
T d1le8a_          19 KQSLNSKEKEEVAKKCGITPLQV   41 (53)
T ss_dssp             CSCCCHHHHHHHHHHTTSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             89989999999999978998888


No 159
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.11  E-value=6.8  Score=16.58  Aligned_cols=23  Identities=9%  Similarity=-0.012  Sum_probs=16.0

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+....||..+|++...+
T Consensus        22 ~~yP~~~~r~~LA~~l~l~~~~V   44 (58)
T d1ig7a_          22 KQYLSIAERAEFSSSLSLTETQV   44 (58)
T ss_dssp             CSCCCHHHHHHHHHHTTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHE
T ss_conf             78888999999999929994061


No 160
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.01  E-value=7.6  Score=16.29  Aligned_cols=21  Identities=5%  Similarity=-0.058  Sum_probs=12.1

Q ss_pred             CCCHHHHHHHHHHCCCCHHHH
Q ss_conf             835899999997549999995
Q gi|254780424|r   53 RVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        53 ~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      .|+.+....||..+|++...+
T Consensus        29 yPs~~e~~~La~~~~l~~~qI   49 (62)
T d1x2na1          29 YPTEDEKKQIAAQTNLTLLQV   49 (62)
T ss_dssp             CCCHHHHHHHHHHHTCCHHHH
T ss_pred             CCCHHHHHHHHHHHCCCHHHH
T ss_conf             969999999999989099993


No 161
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}
Probab=38.03  E-value=4.5  Score=17.73  Aligned_cols=23  Identities=13%  Similarity=0.042  Sum_probs=18.5

Q ss_pred             CHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             58999999975499999950677
Q gi|254780424|r   55 GASRLQHISEVLESPISFFFDVS   77 (144)
Q Consensus        55 s~~~L~~iA~~l~v~~~~l~~~~   77 (144)
                      +.++|+.||+.++++++.|....
T Consensus         9 ~GDTl~~IA~~y~vs~~~i~~~N   31 (48)
T d1e0ga_           9 KGDSLSSIAKRHGVNIKDVMRWN   31 (48)
T ss_dssp             TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             99999999999798899999875


No 162
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=37.89  E-value=8.8  Score=15.86  Aligned_cols=23  Identities=26%  Similarity=0.224  Sum_probs=15.3

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+......||..+|++..-+
T Consensus        21 ~~yp~~~~r~~LA~~lgl~~~qV   43 (57)
T d1jgga_          21 ENYVSRPRRCELAAQLNLPESTI   43 (57)
T ss_dssp             CSCCCHHHHHHHHHHHTSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             79999999999999959986680


No 163
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=37.08  E-value=9.3  Score=15.72  Aligned_cols=24  Identities=17%  Similarity=0.176  Sum_probs=13.3

Q ss_pred             HHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             8528988358999999975499999950
Q gi|254780424|r   47 YEKGVNRVGASRLQHISEVLESPISFFF   74 (144)
Q Consensus        47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l~   74 (144)
                      .|+|-. .+   +..||+..||+..-|+
T Consensus        26 ~~~G~~-~t---~~~Ia~~agvs~~~~Y   49 (88)
T d1t33a1          26 GEYGLH-AT---TRDIAALAGQNIAAIT   49 (88)
T ss_dssp             HHHGGG-SC---HHHHHHHHTSCHHHHH
T ss_pred             HHHCCC-CC---HHHHHHHHCCCHHHHH
T ss_conf             875401-67---9999988399844310


No 164
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=36.25  E-value=2.4  Score=19.52  Aligned_cols=46  Identities=11%  Similarity=-0.016  Sum_probs=21.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             99999998199799999987246999999852898835899999997549999995
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ..+.+....|||..++.-..-     +  +++.....+   +..||+.++++...+
T Consensus        22 ~~~~~~~~~~Lt~~q~~iL~~-----l--~~~~~~~~t---~~eia~~~~~~~~~v   67 (125)
T d1p4xa1          22 FKKKVKPEVDMTIKEFILLTY-----L--FHQQENTLP---FKKIVSDLCYKQSDL   67 (125)
T ss_dssp             HHHHHTTTCSSCHHHHHHHHH-----H--HSCSCSEEE---HHHHHHHSSSCGGGT
T ss_pred             HHHHHHHHCCCCHHHHHHHHH-----H--HHHCCCCCC---HHHHHHHHCCCCCHH
T ss_conf             999999874998899999999-----9--984369867---999999968882439


No 165
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=35.97  E-value=9  Score=15.80  Aligned_cols=22  Identities=18%  Similarity=0.040  Sum_probs=15.5

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHH
Q ss_conf             9883589999999754999999
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISF   72 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~   72 (144)
                      ...|+.+....||..||++..-
T Consensus        21 ~~yp~~~~r~~LA~~lgL~~~q   42 (53)
T d1p7ia_          21 NRYLTERRRQQLSSELGLNEAQ   42 (53)
T ss_dssp             CSSCCHHHHHHHHHHHTCCHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHH
T ss_conf             7889889999999995978688


No 166
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=35.79  E-value=8.2  Score=16.06  Aligned_cols=19  Identities=16%  Similarity=0.358  Sum_probs=13.6

Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q ss_conf             9799999987246999999
Q gi|254780424|r   28 MSQEKLGECLGITFQQVQK   46 (144)
Q Consensus        28 lTQ~eLA~~lGvs~s~is~   46 (144)
                      |+..+||+..|||+.++..
T Consensus        26 l~~~~La~~~~vSr~tvr~   44 (69)
T d2hs5a1          26 LSEPDICAALDVSRNTVRE   44 (69)
T ss_dssp             ECHHHHHHHHTCCHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHH
T ss_conf             6999999998979899999


No 167
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=35.45  E-value=10  Score=15.46  Aligned_cols=22  Identities=23%  Similarity=0.140  Sum_probs=15.5

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHH
Q ss_conf             9883589999999754999999
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISF   72 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~   72 (144)
                      ...|+......||..||++..-
T Consensus        23 ~~yp~~~~r~~LA~~l~l~~~~   44 (67)
T d1zq3p1          23 GRYLTAPRLADLSAKLALGTAQ   44 (67)
T ss_dssp             CSSCCHHHHHHHHHHHTSCHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCCCC
T ss_conf             7787789999999870998133


No 168
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=34.82  E-value=12  Score=15.03  Aligned_cols=42  Identities=24%  Similarity=0.252  Sum_probs=24.0

Q ss_pred             HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf             999999998199-7999999872469999998528988358999999975499
Q gi|254780424|r   17 KRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES   68 (144)
Q Consensus        17 ~rIr~~R~~~gl-TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v   68 (144)
                      ..|+++=....+ ||+||.+.+.         +.|.. .+-.++.+--+-||+
T Consensus         5 ~~I~~li~~~~i~tQ~eL~~~L~---------~~Gi~-vTQaTlSRDL~eLg~   47 (75)
T d1b4aa1           5 IKIREIIMSNDIETQDELVDRLR---------EAGFN-VTQATVSRDIKEMQL   47 (75)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHH---------HTTCC-CCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHH---------HCCCC-EEHHHHHHHHHHHCC
T ss_conf             99999998689778999999999---------85986-308999979999298


No 169
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.39  E-value=11  Score=15.32  Aligned_cols=23  Identities=13%  Similarity=0.141  Sum_probs=17.9

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+....||..+|++...+
T Consensus        20 ~~~P~~~~~~~LA~~lgL~~~qV   42 (57)
T d1e3oc1          20 NQKPTSEDITLIAEQLNMEKEVI   42 (57)
T ss_dssp             CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             57899999999999978799999


No 170
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.32  E-value=9.3  Score=15.71  Aligned_cols=23  Identities=9%  Similarity=0.172  Sum_probs=16.9

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+....||..+|++..-+
T Consensus        24 ~~yPs~~~r~~LA~~l~L~~~~V   46 (68)
T d1ftta_          24 QKYLSAPEREHLASMIHLTPTQV   46 (68)
T ss_dssp             SSSCCHHHHHHHHHHHTSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCE
T ss_conf             77777899999999849992524


No 171
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.22  E-value=10  Score=15.47  Aligned_cols=26  Identities=15%  Similarity=0.129  Sum_probs=17.9

Q ss_pred             HHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             852898835899999997549999995
Q gi|254780424|r   47 YEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      |+.+. .|+.+....||..+|++...+
T Consensus        22 F~~n~-~Ps~~~~~~LA~~l~l~~~~V   47 (66)
T d1bw5a_          22 YAANP-RPDALMKEQLVEMTGLSPRVI   47 (66)
T ss_dssp             HHHCS-CCCHHHHHHHHHHHTSCHHHH
T ss_pred             HHHCC-CCCHHHHHHHHHHCCCCHHHH
T ss_conf             99878-999999999999909397882


No 172
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=34.14  E-value=10  Score=15.50  Aligned_cols=23  Identities=0%  Similarity=-0.119  Sum_probs=16.7

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+......||..||++...+
T Consensus        24 n~yPs~~~r~~LA~~lgl~~~~V   46 (65)
T d1fjla_          24 TQYPDIYTREELAQRTNLTEARI   46 (65)
T ss_dssp             CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             69998389999999959987895


No 173
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=33.87  E-value=10  Score=15.45  Aligned_cols=22  Identities=9%  Similarity=0.173  Sum_probs=14.8

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHH
Q ss_conf             9883589999999754999999
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISF   72 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~   72 (144)
                      ...|+......||..+|++...
T Consensus        31 ~~yP~~~~r~~LA~~l~l~~~q   52 (77)
T d1vnda_          31 QRYLSAPEREHLASLIRLTPTQ   52 (77)
T ss_dssp             CSCCCHHHHHHHHHHHTCCHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHH
T ss_conf             7889999999999970997566


No 174
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.80  E-value=7.6  Score=16.28  Aligned_cols=24  Identities=13%  Similarity=0.033  Sum_probs=18.3

Q ss_pred             CCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             898835899999997549999995
Q gi|254780424|r   50 GVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        50 G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ....|+.+....||..+|++...+
T Consensus        29 ~~~~P~~~~~~~La~~lgl~~~qV   52 (71)
T d1wi3a_          29 VGLYPDQEAIHTLSAQLDLPKHTI   52 (71)
T ss_dssp             HCSCCCHHHHHHHHHHSCCCHHHH
T ss_pred             HCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             067798999999987827999999


No 175
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=33.47  E-value=4.4  Score=17.80  Aligned_cols=32  Identities=16%  Similarity=0.204  Sum_probs=23.0

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99819979999998724699999985289883
Q gi|254780424|r   23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRV   54 (144)
Q Consensus        23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p   54 (144)
                      +--.+.|-.++|+..|||++++.+|=.++...
T Consensus        12 ~G~~~~s~~~IA~~agvs~~~ly~~F~sK~~L   43 (65)
T d2np3a1          12 RGFDATSLRRIAETAGVDQSLVHHFYGTKENL   43 (65)
T ss_dssp             -------------------------CCC-CHH
T ss_pred             HCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf             79040779999998786887999888799999


No 176
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.43  E-value=9  Score=15.80  Aligned_cols=23  Identities=9%  Similarity=-0.010  Sum_probs=17.2

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+....||..+|++...+
T Consensus        23 ~~yp~~~~r~~LA~~l~l~~~qV   45 (58)
T d2craa1          23 NKFITKDKRRKISAATSLSERQI   45 (58)
T ss_dssp             CSSCCHHHHHHHHHHTCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCCHHHE
T ss_conf             69999899999999829997781


No 177
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.21  E-value=3.4  Score=18.48  Aligned_cols=25  Identities=12%  Similarity=0.243  Sum_probs=11.8

Q ss_pred             HHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             8528988358999999975499999950
Q gi|254780424|r   47 YEKGVNRVGASRLQHISEVLESPISFFF   74 (144)
Q Consensus        47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l~   74 (144)
                      .|.|-...|+.   .||+..||+..-|+
T Consensus        21 ~~~G~~~~si~---~Ia~~agvs~~t~Y   45 (76)
T d2fd5a1          21 LERGAVEPSVG---EVMGAAGLTVGGFY   45 (76)
T ss_dssp             HHHTTTSCCHH---HHHHHTTCCGGGGG
T ss_pred             HHHCCCCCCHH---HHHHHHCCCCCCHH
T ss_conf             98491305699---99998389955004


No 178
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=33.05  E-value=13  Score=14.85  Aligned_cols=11  Identities=27%  Similarity=0.184  Sum_probs=4.2

Q ss_pred             HHHHHHCCCCH
Q ss_conf             99999819979
Q gi|254780424|r   20 RLRRMILGMSQ   30 (144)
Q Consensus        20 r~~R~~~glTQ   30 (144)
                      .++=..+||+-
T Consensus         8 ~R~~~~L~L~~   18 (95)
T d1aisb2           8 NKFADELGLSE   18 (95)
T ss_dssp             HHHHHHHTCCH
T ss_pred             HHHHHHCCCCH
T ss_conf             99998869699


No 179
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=32.85  E-value=3.5  Score=18.47  Aligned_cols=27  Identities=15%  Similarity=0.068  Sum_probs=17.0

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             819979999998724699999985289
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGV   51 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~   51 (144)
                      -.++|-.++|+++|||++++.+|=.++
T Consensus        24 ~~~~sv~~Ia~~agvs~~t~Y~~F~~k   50 (71)
T d2iu5a1          24 YHQISVSDIMQTAKIRRQTFYNYFQNQ   50 (71)
T ss_dssp             GGGCCHHHHHHHHTSCGGGGGGTCSSH
T ss_pred             CCCCCHHHHHHHHCCCCCHHHHHCCCH
T ss_conf             640779999987571645897776799


No 180
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.70  E-value=11  Score=15.25  Aligned_cols=23  Identities=9%  Similarity=0.150  Sum_probs=17.8

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+....||..+|++...+
T Consensus        21 ~~~P~~~~~~~La~~l~l~~~~V   43 (58)
T d1au7a1          21 HSKPSSQEIMRMAEELNLEKEVV   43 (58)
T ss_dssp             CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             36999999999999968999999


No 181
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.31  E-value=9.4  Score=15.68  Aligned_cols=23  Identities=4%  Similarity=0.059  Sum_probs=17.8

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+......||..+|++...+
T Consensus        23 n~yP~~~~r~~LA~~l~L~~~~V   45 (68)
T d2cuea1          23 THYPDVFARERLAAKIDLPEARI   45 (68)
T ss_dssp             CSSCCHHHHHHHHHHTTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHE
T ss_conf             68998789999999939693354


No 182
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=32.22  E-value=13  Score=14.76  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=18.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             81997999999872469999998
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKY   47 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~   47 (144)
                      ...++-.++|+.+|+|++++|+-
T Consensus        29 ~~~~~v~el~~~l~~s~~~vS~H   51 (94)
T d1r1ua_          29 VSEASVGHISHQLNLSQSNVSHQ   51 (94)
T ss_dssp             HCCBCHHHHHHHHTCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             29956999999988787789999


No 183
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.99  E-value=11  Score=15.19  Aligned_cols=23  Identities=4%  Similarity=0.089  Sum_probs=17.2

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+....||..||++....
T Consensus        22 n~yp~~~~r~~LA~~l~L~~~qV   44 (57)
T d2e1oa1          22 QKYLSPPERKRLAKMLQLSERQV   44 (57)
T ss_dssp             CSSCCHHHHHHHHHHTTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             79999999999999958987783


No 184
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.61  E-value=11  Score=15.22  Aligned_cols=21  Identities=5%  Similarity=-0.021  Sum_probs=16.0

Q ss_pred             CCCHHHHHHHHHHCCCCHHHH
Q ss_conf             835899999997549999995
Q gi|254780424|r   53 RVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        53 ~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      -|+.+....||..+|+++..+
T Consensus        25 yPs~~e~~~La~~~gL~~~qV   45 (60)
T d1k61a_          25 YLDTKGLENLMKNTSLSRIQI   45 (60)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHH
T ss_pred             CCCHHHHHHHHHHHCCCHHHH
T ss_conf             949999999999988099997


No 185
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=31.50  E-value=12  Score=15.05  Aligned_cols=23  Identities=13%  Similarity=0.010  Sum_probs=16.0

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+......||..||++...+
T Consensus        19 ~~yp~~~~r~~LA~~l~l~~~~V   41 (56)
T d9anta_          19 NRYLTRRRRIEIAHALSLTERQI   41 (56)
T ss_dssp             CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHE
T ss_conf             79999999999999939986670


No 186
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.18  E-value=14  Score=14.60  Aligned_cols=23  Identities=13%  Similarity=0.196  Sum_probs=17.3

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+....||..+|+++..+
T Consensus        30 n~~P~~~~r~~La~~~~l~~~~V   52 (67)
T d1ocpa_          30 CPKPSLQQITHIANQLGLEKDVV   52 (67)
T ss_dssp             CSCCCHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             25799999999999984788999


No 187
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.96  E-value=11  Score=15.20  Aligned_cols=26  Identities=4%  Similarity=0.031  Sum_probs=19.6

Q ss_pred             HHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             852898835899999997549999995
Q gi|254780424|r   47 YEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      |+.+ ..|+.+....||..+|++...+
T Consensus        23 F~~~-~~P~~~~r~~LA~~l~l~~~~V   48 (76)
T d2ecba1          23 FLNS-SVLTDEELNRLRAQTKLTRREI   48 (76)
T ss_dssp             HHHC-SSCCHHHHHHHHHHTCCCHHHH
T ss_pred             HHHC-CCCCHHHHHHHHHHHCCCHHHH
T ss_conf             9987-7888999999999968989999


No 188
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.91  E-value=13  Score=14.77  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=24.1

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             8199799999987246999999852898835899999997549999995
Q gi|254780424|r   25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ..-+|-.++...-       ..++.+. .|+.+....||..||++...+
T Consensus        31 Rt~ft~~Ql~~Le-------~~F~~n~-yPs~~~r~~LA~~l~l~~~~V   71 (88)
T d1b72a_          31 RTNFTTRQLTELE-------KEFHFNK-YLSRARRVEIAATLELNETQV   71 (88)
T ss_dssp             CCCCCHHHHHHHH-------HHHTTCS-SCCHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCHHHHHHHH-------HHHHHCC-CCCHHHHHHHHHHCCCCHHHE
T ss_conf             8688999999999-------9999678-875278999999829997784


No 189
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.83  E-value=9.5  Score=15.64  Aligned_cols=20  Identities=10%  Similarity=-0.087  Sum_probs=10.2

Q ss_pred             CCCCHHHHHHHHHHCCCCHH
Q ss_conf             88358999999975499999
Q gi|254780424|r   52 NRVGASRLQHISEVLESPIS   71 (144)
Q Consensus        52 ~~ps~~~L~~iA~~l~v~~~   71 (144)
                      ..|+......||..+|++..
T Consensus        24 ~yP~~~~r~~LA~~l~l~~~   43 (60)
T d1yz8p1          24 RYPDMSTREEIAVWTNLTEA   43 (60)
T ss_dssp             SSCCTTTTTHHHHHTTSCHH
T ss_pred             CCCCHHHHHHHHHHHCCCHH
T ss_conf             99986799999998779857


No 190
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.58  E-value=13  Score=14.71  Aligned_cols=28  Identities=11%  Similarity=-0.028  Sum_probs=20.8

Q ss_pred             HHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             9852898835899999997549999995
Q gi|254780424|r   46 KYEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        46 ~~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      .++.....|+......||..+|++...+
T Consensus        19 ~F~~~n~yP~~~~r~~LA~~lgL~~~~V   46 (72)
T d1uhsa_          19 NFNKVNKHPDPTTLCLIAAEAGLTEEQT   46 (72)
T ss_dssp             HHHSSCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             9987423389999999999939978999


No 191
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.97  E-value=14  Score=14.64  Aligned_cols=23  Identities=0%  Similarity=0.039  Sum_probs=14.5

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+.+..||+-+|++...+
T Consensus        43 ~~~p~~~~~~~la~~~gl~~~~i   65 (80)
T d1wh7a_          43 IQKHDDVAVEQFCAETGVRRQVL   65 (80)
T ss_dssp             CCSSTTHHHHHHHHHSCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHE
T ss_conf             56969999999999978898895


No 192
>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.89  E-value=4.2  Score=17.94  Aligned_cols=43  Identities=14%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             989999999999999981997-9999998724699999985289
Q gi|254780424|r    9 NPVDINVGKRIRLRRMILGMS-QEKLGECLGITFQQVQKYEKGV   51 (144)
Q Consensus         9 ~~~d~~iG~rIr~~R~~~glT-Q~eLA~~lGvs~s~is~~E~G~   51 (144)
                      |..|+-+.+.+-.+-...+.+ =..||.++|+|...|..++...
T Consensus         7 ~~~d~dl~~~f~~ia~~l~~~dwk~lar~LGls~~~I~~I~~~~   50 (127)
T d1ddfa_           7 NLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDN   50 (127)
T ss_dssp             CCTTCCTTSHHHHHHHHSCHHHHHHHHHTTTSCHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             97603699999999987798899999999499999999999878


No 193
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.03  E-value=6.5  Score=16.69  Aligned_cols=22  Identities=23%  Similarity=0.086  Sum_probs=16.1

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHH
Q ss_conf             9883589999999754999999
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISF   72 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~   72 (144)
                      ...|+.+....||..+|++...
T Consensus        20 n~~P~~~~~~~LA~~l~l~~~~   41 (50)
T d1s7ea1          20 NKRPSKELQITISQQLGLELST   41 (50)
T ss_dssp             SCSSTHHHHHHHHTTSCSSSHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHH
T ss_conf             7999999999999997909889


No 194
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=27.99  E-value=8.1  Score=16.11  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=8.1

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             79999998724699999
Q gi|254780424|r   29 SQEKLGECLGITFQQVQ   45 (144)
Q Consensus        29 TQ~eLA~~lGvs~s~is   45 (144)
                      |..+||+.+|||+.++.
T Consensus        35 s~r~La~~~~vSr~tvr   51 (100)
T d1v4ra1          35 SVADIRAQFGVAAKTVS   51 (100)
T ss_dssp             CHHHHHHHSSSCTTHHH
T ss_pred             CHHHHHHHHCCCHHHHH
T ss_conf             69999999887989999


No 195
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.64  E-value=14  Score=14.57  Aligned_cols=23  Identities=9%  Similarity=0.105  Sum_probs=18.9

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+.+.+..||..+|++...+
T Consensus        25 n~~Ps~~~~~~La~~~gL~~~qV   47 (76)
T d2ecca1          25 CQWARREDYQKLEQITGLPRPEI   47 (76)
T ss_dssp             CSSCCHHHHHHHHHHTCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             67899999999999980579999


No 196
>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}
Probab=27.61  E-value=16  Score=14.26  Aligned_cols=22  Identities=5%  Similarity=0.193  Sum_probs=13.0

Q ss_pred             CCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             8358999999975499999950
Q gi|254780424|r   53 RVGASRLQHISEVLESPISFFF   74 (144)
Q Consensus        53 ~ps~~~L~~iA~~l~v~~~~l~   74 (144)
                      -.+.++|..||+.+|+|++.|-
T Consensus        81 ~~ka~TleeLA~~~gid~~~L~  102 (146)
T d1d4ca3          81 VKEGKTIEELAKQIDVPAAELA  102 (146)
T ss_dssp             CEEESSHHHHHHHHTCCHHHHH
T ss_pred             EEECCCHHHHHHHHCCCHHHHH
T ss_conf             5574889999998698978999


No 197
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.63  E-value=16  Score=14.18  Aligned_cols=23  Identities=9%  Similarity=-0.005  Sum_probs=14.6

Q ss_pred             CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             98835899999997549999995
Q gi|254780424|r   51 VNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        51 ~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      ...|+......||..+|++...+
T Consensus        35 ~~yPs~~~r~~LA~~l~l~~~qV   57 (77)
T d1pufa_          35 NMYLTRDRRYEVARLLNLTERQV   57 (77)
T ss_dssp             CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             79999999999999809887780


No 198
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.53  E-value=19  Score=13.78  Aligned_cols=31  Identities=23%  Similarity=0.193  Sum_probs=20.9

Q ss_pred             HHHHHHHHHCCC-CHHHHHHHHH-----HHHHHHHHH
Q ss_conf             999999998199-7999999872-----469999998
Q gi|254780424|r   17 KRIRLRRMILGM-SQEKLGECLG-----ITFQQVQKY   47 (144)
Q Consensus        17 ~rIr~~R~~~gl-TQ~eLA~~lG-----vs~s~is~~   47 (144)
                      ..|+.+=....+ ||+||.+.+.     ||.+|+|+.
T Consensus         7 ~~I~~li~~~~i~tQ~eL~~~L~~~G~~vTQaTlSRD   43 (63)
T d2p5ka1           7 IKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRD   43 (63)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHH
T ss_conf             9999999848978899999999986987528998878


No 199
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.25  E-value=4.7  Score=17.62  Aligned_cols=24  Identities=13%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             CHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf             589999999754999999506774
Q gi|254780424|r   55 GASRLQHISEVLESPISFFFDVSP   78 (144)
Q Consensus        55 s~~~L~~iA~~l~v~~~~l~~~~~   78 (144)
                      +-++|+.||+.++++++.+....+
T Consensus         8 ~GDTL~~IA~~y~v~~~~i~~~N~   31 (48)
T d1y7ma2           8 QGDTLNSIAADFRISTAALLQANP   31 (48)
T ss_dssp             TTCCHHHHHHHTTSCCCCCCCTSC
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             998999999876989999998729


No 200
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=22.32  E-value=20  Score=13.63  Aligned_cols=22  Identities=9%  Similarity=-0.068  Sum_probs=14.5

Q ss_pred             CCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             8835899999997549999995
Q gi|254780424|r   52 NRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        52 ~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      .-...++|..||+.+|+|++.|
T Consensus        79 ~~~~adtleeLA~~~gid~~~L  100 (143)
T d1y0pa3          79 VAPTADSLVKLGKMEGIDGKAL  100 (143)
T ss_dssp             CCCEESSHHHHHHHHTSCHHHH
T ss_pred             CEEECCCHHHHHHHHCCCHHHH
T ss_conf             3223583999999859897898


No 201
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.19  E-value=20  Score=13.62  Aligned_cols=13  Identities=8%  Similarity=0.082  Sum_probs=4.8

Q ss_pred             HHHHHHHHCCCCH
Q ss_conf             9999999819979
Q gi|254780424|r   18 RIRLRRMILGMSQ   30 (144)
Q Consensus        18 rIr~~R~~~glTQ   30 (144)
                      .|..+=..+||+.
T Consensus         8 ~I~~~~~~L~L~~   20 (95)
T d1vola1           8 EITTMADRINLPR   20 (95)
T ss_dssp             HHHHHHHHTTCCH
T ss_pred             HHHHHHHHCCCCH
T ss_conf             9999998859699


No 202
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.14  E-value=20  Score=13.61  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf             799999987246999999852898835899999997549999
Q gi|254780424|r   29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI   70 (144)
Q Consensus        29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~   70 (144)
                      |-...|+.+|+|++++|+           .|..+-+.||+++
T Consensus        22 s~t~AA~~l~isq~avs~-----------~l~~lE~~~g~~L   52 (89)
T d2esna1          22 NVGTAASELAISASAFSH-----------ALGRLRQGLDDEL   52 (89)
T ss_dssp             SHHHHHHHHTCCHHHHHH-----------HHHHHHHHHTSCC
T ss_pred             CHHHHHHHHCCCCCHHHH-----------HHHHHHHCCCCEE
T ss_conf             999999987799847559-----------9999986577300


No 203
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=22.04  E-value=20  Score=13.60  Aligned_cols=13  Identities=15%  Similarity=0.079  Sum_probs=6.3

Q ss_pred             CHHHHHHHHHHCC
Q ss_conf             5899999997549
Q gi|254780424|r   55 GASRLQHISEVLE   67 (144)
Q Consensus        55 s~~~L~~iA~~l~   67 (144)
                      ..+.+.+||+.+|
T Consensus        27 a~~l~~~l~~~~g   39 (94)
T d1rr7a_          27 SLEIVVAICKHLG   39 (94)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999979


No 204
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=20.85  E-value=21  Score=13.44  Aligned_cols=36  Identities=8%  Similarity=0.235  Sum_probs=26.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH-----CCCCCCCHHHHHHH
Q ss_conf             9979999998724699999985-----28988358999999
Q gi|254780424|r   27 GMSQEKLGECLGITFQQVQKYE-----KGVNRVGASRLQHI   62 (144)
Q Consensus        27 glTQ~eLA~~lGvs~s~is~~E-----~G~~~ps~~~L~~i   62 (144)
                      -+|++|+.++-|+|.+.+..|.     .|........|.+.
T Consensus        50 l~S~~EAcrrY~LS~eEf~~W~~a~~~hGe~aLr~t~~q~y   90 (93)
T d2oa4a1          50 LITLAEAKQTYGLSDEEFNSWVSALAEHGKDALKVTALKKY   90 (93)
T ss_dssp             TCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSSSCCHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             57799999883999999999999999986999999989998


No 205
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.47  E-value=21  Score=13.39  Aligned_cols=27  Identities=15%  Similarity=0.191  Sum_probs=16.9

Q ss_pred             HHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             852898835899999997549999995
Q gi|254780424|r   47 YEKGVNRVGASRLQHISEVLESPISFF   73 (144)
Q Consensus        47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l   73 (144)
                      |+.+...|+.+.+..||+.+|++....
T Consensus        20 F~~~~~yPs~~~~~~LA~~lgls~~qV   46 (59)
T d2cqxa1          20 FVSVTKYPDEKRLKGLSKQLDWSVRKI   46 (59)
T ss_dssp             HHHTCSSCCHHHHHHHHHHTTCCHHHH
T ss_pred             HHHCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf             988489959999999999978199999


Done!