Query gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 144 No_of_seqs 111 out of 3925 Neff 8.2 Searched_HMMs 13730 Date Wed Jun 1 05:28:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780424.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2b5aa1 a.35.1.3 (A:1-77) Regu 99.6 3.3E-15 2.4E-19 114.7 9.4 70 8-77 2-73 (77) 2 d2r1jl1 a.35.1.2 (L:3-68) P22 99.6 2.7E-15 1.9E-19 115.3 7.8 64 14-77 3-66 (66) 3 d1b0na2 a.35.1.3 (A:1-68) SinR 99.6 2.5E-15 1.8E-19 115.4 7.6 65 14-78 1-66 (68) 4 d1y9qa1 a.35.1.8 (A:4-82) Prob 99.6 1.6E-15 1.1E-19 116.8 6.2 67 13-79 7-73 (79) 5 d1y7ya1 a.35.1.3 (A:5-73) Rest 99.6 3E-15 2.2E-19 114.9 7.1 62 13-74 8-69 (69) 6 d2croa_ a.35.1.2 (A:) cro 434 99.5 5.5E-15 4E-19 113.3 6.7 62 14-76 3-64 (65) 7 d1r69a_ a.35.1.2 (A:) 434 C1 r 99.5 4.6E-15 3.4E-19 113.8 6.2 61 15-76 2-62 (63) 8 d1utxa_ a.35.1.3 (A:) Putative 99.5 3.2E-15 2.3E-19 114.8 4.3 64 15-78 2-65 (66) 9 d1lmb3_ a.35.1.2 (3:) lambda C 99.5 3.9E-14 2.8E-18 107.8 7.1 61 15-75 13-73 (87) 10 d2icta1 a.35.1.3 (A:8-94) Anti 99.5 4.5E-14 3.3E-18 107.4 7.2 61 16-76 3-63 (87) 11 d1x57a1 a.35.1.12 (A:8-85) End 99.5 1.1E-14 8E-19 111.4 3.9 66 12-77 4-69 (78) 12 d2ofya1 a.35.1.3 (A:3-84) Puta 99.5 9.9E-14 7.2E-18 105.2 8.4 65 13-79 13-78 (82) 13 d2o38a1 a.35.1.13 (A:28-116) H 99.4 1.3E-13 9.1E-18 104.6 4.4 67 13-79 10-77 (89) 14 d2a6ca1 a.35.1.13 (A:1-69) HTH 99.3 1.1E-12 8.1E-17 98.5 5.0 61 14-74 6-67 (69) 15 d2ppxa1 a.35.1.3 (A:30-91) Unc 99.1 4.9E-11 3.6E-15 88.0 5.7 57 18-75 3-59 (62) 16 d2auwa1 a.35.1.10 (A:88-154) H 98.8 3.2E-09 2.4E-13 76.3 6.4 43 16-58 3-45 (67) 17 d2bnma1 a.35.1.3 (A:6-76) Hydr 97.4 0.00017 1.2E-08 46.1 6.5 60 15-74 6-66 (71) 18 d1dwka1 a.35.1.4 (A:1-86) Cyan 97.1 0.00066 4.8E-08 42.3 6.8 72 1-73 1-72 (86) 19 d2awia1 a.35.1.11 (A:2-66) Prg 96.8 0.0017 1.3E-07 39.6 6.4 60 15-75 3-62 (65) 20 d1e3oc2 a.35.1.1 (C:1-75) Oct- 96.3 0.0084 6.2E-07 35.2 7.4 56 7-64 3-65 (75) 21 d1au7a2 a.35.1.1 (A:5-76) Pit- 95.7 0.014 1E-06 33.8 6.3 50 14-65 7-62 (72) 22 d2hsga1 a.35.1.5 (A:2-58) Gluc 95.4 0.012 8.5E-07 34.3 4.9 46 27-72 1-49 (57) 23 d1ic8a2 a.35.1.1 (A:87-180) He 95.3 0.021 1.5E-06 32.7 6.2 49 14-62 28-76 (94) 24 d1efaa1 a.35.1.5 (A:2-60) Lac 95.2 0.011 7.8E-07 34.5 4.3 45 26-70 1-48 (59) 25 d1r71a_ a.4.14.1 (A:) Transcri 94.9 0.02 1.5E-06 32.8 5.0 45 8-55 14-58 (114) 26 d1vz0a1 a.4.14.1 (A:116-208) P 94.9 0.021 1.5E-06 32.7 5.0 40 9-51 4-43 (93) 27 d1qpza1 a.35.1.5 (A:2-58) Puri 94.7 0.02 1.5E-06 32.8 4.6 43 29-71 2-47 (57) 28 d1nera_ a.35.1.2 (A:) Ner {Bac 94.6 0.026 1.9E-06 32.1 4.9 56 18-76 13-68 (74) 29 d1uxda_ a.35.1.5 (A:) Fructose 93.8 0.027 2E-06 32.0 3.6 45 28-72 1-51 (59) 30 d2ox6a1 a.35.1.6 (A:5-166) Hyp 93.6 0.13 9.3E-06 27.7 6.9 63 18-80 7-79 (162) 31 d1s4ka_ a.35.1.6 (A:) Putative 93.4 0.089 6.5E-06 28.7 5.7 48 17-64 6-55 (120) 32 d1ijwc_ a.4.1.2 (C:) HIN recom 93.1 0.048 3.5E-06 30.4 4.0 32 17-49 12-43 (47) 33 d1hlva1 a.4.1.7 (A:1-66) DNA-b 92.7 0.048 3.5E-06 30.4 3.5 38 15-52 10-50 (66) 34 d1k78a1 a.4.1.5 (A:19-81) Pax- 92.5 0.097 7.1E-06 28.4 4.9 41 6-49 12-52 (63) 35 d1jhga_ a.4.12.1 (A:) Trp repr 92.2 0.094 6.8E-06 28.5 4.5 39 14-52 43-83 (101) 36 d1z05a1 a.4.5.63 (A:10-80) Tra 89.8 0.25 1.8E-05 25.8 4.8 36 13-48 6-41 (71) 37 d2jn6a1 a.4.1.19 (A:1-89) Unch 89.0 0.12 8.9E-06 27.8 2.7 32 18-49 11-45 (89) 38 d2ao9a1 a.4.1.17 (A:13-132) Ph 88.3 0.12 8.9E-06 27.8 2.3 29 27-55 36-65 (120) 39 d1nr3a_ d.236.1.1 (A:) DNA-bin 87.9 0.0057 4.2E-07 36.3 -4.6 46 25-70 3-50 (122) 40 d1zs4a1 a.35.1.9 (A:4-81) Regu 86.9 0.27 2E-05 25.5 3.4 44 28-73 21-64 (78) 41 d1z6ra1 a.4.5.63 (A:12-81) Mlc 86.8 0.3 2.2E-05 25.2 3.6 37 13-49 5-41 (70) 42 d1pdnc_ a.4.1.5 (C:) Paired pr 85.9 0.62 4.5E-05 23.3 4.9 40 7-49 15-54 (123) 43 d1i5za1 a.4.5.4 (A:138-206) Ca 85.6 0.23 1.6E-05 26.1 2.5 24 26-49 28-51 (69) 44 d3e5ua1 a.4.5.4 (A:148-227) Ch 84.9 0.27 2E-05 25.6 2.6 23 26-48 29-51 (80) 45 d1zyba1 a.4.5.4 (A:148-220) Pr 84.6 0.27 2E-05 25.5 2.5 23 26-48 26-48 (73) 46 d1rp3a2 a.4.13.2 (A:164-234) S 84.6 0.46 3.4E-05 24.1 3.7 33 17-49 27-59 (71) 47 d1rzsa_ a.35.1.2 (A:) cro p22 84.5 0.25 1.8E-05 25.8 2.3 26 29-56 12-37 (61) 48 d2gaua1 a.4.5.4 (A:152-232) Tr 84.1 0.26 1.9E-05 25.6 2.3 23 26-48 28-50 (81) 49 d2cfxa1 a.4.5.32 (A:1-63) Tran 84.1 0.67 4.9E-05 23.0 4.4 35 9-46 4-38 (63) 50 d1ft9a1 a.4.5.4 (A:134-213) CO 84.0 0.3 2.2E-05 25.2 2.5 23 26-48 29-51 (80) 51 d2hoea1 a.4.5.63 (A:10-71) N-a 83.7 0.47 3.4E-05 24.0 3.4 29 19-48 5-33 (62) 52 d2bgca1 a.4.5.4 (A:138-237) Li 83.6 0.3 2.2E-05 25.3 2.4 21 27-47 31-52 (100) 53 d1biaa1 a.4.5.1 (A:1-63) Bioti 83.5 0.27 2E-05 25.6 2.1 30 18-47 10-39 (63) 54 d1s7oa_ a.4.13.3 (A:) Hypothet 83.4 0.65 4.7E-05 23.1 4.0 33 17-49 22-54 (106) 55 d1x2la1 a.35.1.7 (A:9-95) Home 83.3 0.9 6.6E-05 22.2 4.7 37 14-50 13-50 (87) 56 d3ctaa1 a.4.5.28 (A:5-89) Ta10 83.2 0.78 5.7E-05 22.6 4.4 33 16-48 4-42 (85) 57 d2csfa1 a.35.1.7 (A:8-95) DNA- 82.9 1.4 9.9E-05 21.1 6.5 57 13-69 13-76 (88) 58 d1j5ya1 a.4.5.1 (A:3-67) Putat 82.6 0.47 3.4E-05 24.0 3.1 32 17-48 11-43 (65) 59 d2zcwa1 a.4.5.4 (A:118-199) Tr 82.0 0.39 2.9E-05 24.5 2.5 23 26-48 28-50 (82) 60 d1gdta1 a.4.1.2 (A:141-183) ga 81.8 0.95 6.9E-05 22.1 4.4 33 17-50 9-41 (43) 61 d2o4aa1 a.35.1.7 (A:370-452) D 81.8 1.2 8.6E-05 21.5 4.9 38 14-51 5-43 (83) 62 d2a61a1 a.4.5.28 (A:5-143) Tra 81.3 0.72 5.2E-05 22.8 3.6 31 17-47 34-64 (139) 63 d2o3fa1 a.4.1.20 (A:1-83) Puta 81.0 1 7.5E-05 21.8 4.3 50 10-59 18-68 (83) 64 d2d1ha1 a.4.5.50 (A:1-109) Hyp 80.9 0.58 4.2E-05 23.5 3.0 20 28-47 37-56 (109) 65 d1s7ea2 a.35.1.7 (A:6-85) Hepa 80.5 0.98 7.1E-05 22.0 4.1 54 14-67 6-65 (80) 66 d2cyya1 a.4.5.32 (A:5-64) Puta 80.1 1.1 8.1E-05 21.6 4.2 35 9-46 2-36 (60) 67 d2cg4a1 a.4.5.32 (A:4-66) Regu 79.9 1.3 9.5E-05 21.2 4.6 36 8-46 3-38 (63) 68 d2etha1 a.4.5.28 (A:1-140) Put 78.4 0.92 6.7E-05 22.1 3.4 30 18-47 37-66 (140) 69 d1xsva_ a.4.13.3 (A:) Hypothet 77.4 1.1 7.8E-05 21.7 3.5 32 17-48 24-55 (106) 70 d1wh8a_ a.35.1.7 (A:) Homeobox 77.4 1.8 0.00013 20.3 4.7 38 13-50 30-68 (111) 71 d1or7a1 a.4.13.2 (A:120-187) S 77.3 1.2 8.6E-05 21.5 3.7 32 17-48 24-55 (68) 72 d1ku3a_ a.4.13.2 (A:) Sigma70 76.8 1.3 9.1E-05 21.3 3.7 33 18-50 15-51 (61) 73 d1lj9a_ a.4.5.28 (A:) Transcri 76.3 0.79 5.8E-05 22.6 2.6 29 19-47 35-63 (144) 74 d3broa1 a.4.5.28 (A:3-137) Tra 75.8 1.2 9.1E-05 21.3 3.5 19 28-46 46-64 (135) 75 d1i1ga1 a.4.5.32 (A:2-61) LprA 75.7 1.1 8E-05 21.7 3.2 29 18-46 8-36 (60) 76 d1wh6a_ a.35.1.7 (A:) Homeobox 75.3 1.9 0.00014 20.1 4.3 38 13-50 20-58 (101) 77 d1d1la_ a.35.1.2 (A:) cro lamb 75.2 1.2 9E-05 21.3 3.3 35 19-55 7-41 (61) 78 d1lnwa_ a.4.5.28 (A:) MexR rep 74.3 0.89 6.5E-05 22.3 2.4 28 20-47 43-70 (141) 79 d2hr3a1 a.4.5.28 (A:2-146) Pro 73.9 2.5 0.00018 19.3 4.8 19 28-46 50-68 (145) 80 d2p7vb1 a.4.13.2 (B:546-613) S 73.5 0.97 7E-05 22.0 2.4 25 26-50 24-48 (68) 81 d1j9ia_ a.6.1.5 (A:) Terminase 73.5 0.54 3.9E-05 23.6 1.1 23 27-49 2-24 (68) 82 d1jgsa_ a.4.5.28 (A:) Multiple 72.3 1.8 0.00013 20.3 3.5 26 21-46 42-67 (138) 83 d1q06a_ a.6.1.3 (A:) Transcrip 72.0 1.1 8E-05 21.7 2.4 46 28-73 1-63 (127) 84 d1z91a1 a.4.5.28 (A:8-144) Org 71.8 0.92 6.7E-05 22.2 2.0 30 18-47 38-67 (137) 85 d1sfxa_ a.4.5.50 (A:) Hypothet 71.4 2.5 0.00018 19.4 4.1 45 16-73 7-51 (109) 86 d1etxa_ a.4.1.12 (A:) FIS prot 71.3 2.4 0.00017 19.5 4.0 31 17-47 52-82 (89) 87 d1r8da_ a.6.1.3 (A:) Multidrug 70.6 1.2 8.4E-05 21.5 2.3 48 27-74 2-66 (109) 88 d1s3ja_ a.4.5.28 (A:) Putative 70.3 1.3 9.8E-05 21.1 2.6 23 105-128 116-138 (143) 89 d1umqa_ a.4.1.12 (A:) Photosyn 70.2 2.6 0.00019 19.3 4.0 34 14-47 20-53 (60) 90 d2fxaa1 a.4.5.28 (A:6-167) Pro 70.0 1.5 0.00011 20.8 2.8 29 19-47 47-75 (162) 91 d2fbia1 a.4.5.28 (A:5-140) Pro 69.8 1.5 0.00011 20.7 2.8 15 59-73 47-61 (136) 92 d1a04a1 a.4.6.2 (A:150-216) Ni 69.6 1.6 0.00011 20.7 2.8 26 24-49 18-43 (67) 93 d1aisb1 a.74.1.2 (B:1108-1205) 69.3 2.9 0.00021 19.0 4.1 12 19-30 9-20 (98) 94 d2fbha1 a.4.5.28 (A:8-144) Tra 69.2 1.5 0.00011 20.8 2.6 21 27-47 43-63 (137) 95 d1ku9a_ a.4.5.36 (A:) DNA-bind 69.0 1.1 7.8E-05 21.7 1.8 21 27-47 41-61 (151) 96 d1ttya_ a.4.13.2 (A:) Sigma70 66.8 1.7 0.00012 20.5 2.4 26 25-50 36-61 (87) 97 d1z0xa1 a.4.1.9 (A:4-71) Trans 66.6 1.2 8.5E-05 21.5 1.6 42 25-66 21-62 (68) 98 d1mkma1 a.4.5.33 (A:1-75) Tran 66.1 1.2 8.8E-05 21.4 1.6 30 19-48 11-41 (75) 99 d2fbqa1 a.4.1.9 (A:2-80) Trans 65.6 0.6 4.3E-05 23.4 -0.0 30 25-54 22-51 (79) 100 d2gfna1 a.4.1.9 (A:4-80) Proba 65.4 1 7.6E-05 21.8 1.2 39 26-64 25-63 (77) 101 d1p4wa_ a.4.6.2 (A:) Transcrip 65.3 2.9 0.00021 19.0 3.4 46 23-68 33-82 (87) 102 d1ub9a_ a.4.5.28 (A:) Hypothet 65.1 2.9 0.00021 18.9 3.4 36 9-47 15-50 (100) 103 d2o7ta1 a.4.1.9 (A:1-78) Trans 64.1 1.9 0.00014 20.2 2.3 26 26-51 26-51 (78) 104 d1fsea_ a.4.6.2 (A:) Germinati 63.4 2.3 0.00017 19.6 2.7 27 24-50 16-42 (67) 105 d2frha1 a.4.5.28 (A:102-216) P 62.9 2.4 0.00017 19.5 2.7 15 59-73 52-66 (115) 106 d1ngra_ a.77.1.2 (A:) p75 low 62.0 3.1 0.00023 18.8 3.1 33 26-59 20-52 (85) 107 d3deua1 a.4.5.28 (A:2-141) Tra 61.8 2.4 0.00018 19.5 2.5 23 105-128 113-135 (140) 108 d1yioa1 a.4.6.2 (A:131-200) Re 61.7 2.5 0.00018 19.3 2.6 26 24-49 24-49 (70) 109 d1r8ea1 a.6.1.3 (A:3-120) Tran 61.6 1.6 0.00012 20.5 1.6 46 28-73 4-67 (118) 110 d2fq4a1 a.4.1.9 (A:9-77) Trans 61.3 2.6 0.00019 19.3 2.6 36 17-52 14-49 (69) 111 d1v7ba1 a.4.1.9 (A:1-74) Trans 61.1 2 0.00015 19.9 2.0 36 24-59 21-56 (74) 112 d2bv6a1 a.4.5.28 (A:5-140) Tra 60.3 0.98 7.2E-05 22.0 0.3 12 59-70 51-62 (136) 113 d2fx0a1 a.4.1.9 (A:4-76) Hemol 59.4 3 0.00022 18.9 2.6 31 24-54 21-51 (73) 114 d2i10a1 a.4.1.9 (A:10-78) Puta 58.4 3.1 0.00023 18.7 2.6 36 19-54 12-47 (69) 115 d1rkta1 a.4.1.9 (A:2-82) Hypot 58.2 2.2 0.00016 19.7 1.8 27 46-75 24-50 (81) 116 d1l3la1 a.4.6.2 (A:170-234) Qu 57.9 3.2 0.00024 18.7 2.6 27 24-50 16-42 (65) 117 d1t56a1 a.4.1.9 (A:22-94) Ethr 57.9 1.4 9.9E-05 21.1 0.7 31 25-55 21-51 (73) 118 d2g7sa1 a.4.1.9 (A:3-76) Putat 57.3 2.2 0.00016 19.7 1.7 29 25-53 22-50 (74) 119 d3c07a1 a.4.1.9 (A:15-89) Puta 57.0 3.5 0.00025 18.5 2.6 25 26-50 24-48 (75) 120 d1bl0a1 a.4.1.8 (A:9-62) MarA 56.6 2.1 0.00015 19.9 1.4 25 25-49 17-41 (54) 121 d2hkua1 a.4.1.9 (A:18-87) Puta 56.4 3.5 0.00025 18.5 2.6 25 27-51 20-44 (70) 122 d1jt6a1 a.4.1.9 (A:2-72) Multi 56.0 3 0.00022 18.9 2.2 28 25-52 19-46 (71) 123 d1sfua_ a.4.5.19 (A:) 34L {Yab 56.0 1.8 0.00013 20.3 1.0 38 10-47 5-44 (70) 124 d1jhfa1 a.4.5.2 (A:2-72) LexA 56.0 5.6 0.00041 17.1 5.5 35 13-47 8-45 (71) 125 d1p4xa2 a.4.5.28 (A:126-250) S 55.9 2.1 0.00015 19.8 1.4 15 59-73 52-66 (125) 126 d2np5a1 a.4.1.9 (A:9-77) Trans 55.7 3.2 0.00023 18.7 2.3 29 24-52 18-46 (69) 127 d2id6a1 a.4.1.9 (A:1-75) Trans 54.6 3.3 0.00024 18.6 2.2 50 15-64 11-60 (75) 128 d1ui5a1 a.4.1.9 (A:5-75) A-fac 54.0 4.1 0.0003 18.0 2.6 23 26-48 24-46 (71) 129 d1u2wa1 a.4.5.5 (A:12-119) Cad 53.5 3.9 0.00029 18.1 2.4 22 26-47 44-65 (108) 130 d2vkva1 a.4.1.9 (A:6-67) Tetra 53.4 2.7 0.0002 19.1 1.6 34 21-54 13-46 (62) 131 d2d6ya1 a.4.1.9 (A:7-74) Putat 53.3 3.8 0.00028 18.2 2.4 33 22-54 17-49 (68) 132 d2id3a1 a.4.1.9 (A:13-80) Puta 52.7 3.7 0.00027 18.3 2.2 30 25-54 24-53 (68) 133 d2g3ba1 a.4.1.9 (A:2-73) Putat 51.7 3.5 0.00025 18.5 1.9 28 25-52 20-47 (72) 134 d1hsja1 a.4.5.28 (A:373-487) S 51.6 1.7 0.00013 20.4 0.4 48 16-73 18-65 (115) 135 d2ev0a1 a.4.5.24 (A:2-62) Mang 51.3 6.6 0.00048 16.7 4.0 24 24-47 18-41 (61) 136 d2g7la1 a.4.1.9 (A:16-83) Puta 50.8 1.7 0.00012 20.5 0.2 28 25-52 22-49 (68) 137 d2g7ga1 a.4.1.9 (A:9-73) Putat 50.6 6 0.00044 16.9 3.0 34 21-54 13-46 (65) 138 d1zk8a1 a.4.1.9 (A:6-77) Trans 50.3 4.6 0.00033 17.7 2.4 25 23-47 19-43 (72) 139 d2hyja1 a.4.1.9 (A:8-82) Putat 50.2 2.5 0.00018 19.4 1.0 37 24-60 22-58 (75) 140 d1pb6a1 a.4.1.9 (A:14-85) Hypo 50.2 3.9 0.00028 18.2 2.0 34 25-58 22-55 (72) 141 d1vi0a1 a.4.1.9 (A:6-77) Hypot 49.8 3.7 0.00027 18.3 1.9 35 25-59 19-53 (72) 142 d1ntca_ a.4.1.12 (A:) DNA-bind 49.5 5.7 0.00041 17.1 2.7 29 18-46 55-83 (91) 143 d1rp3a1 a.4.13.1 (A:87-163) Si 49.3 7.1 0.00052 16.5 4.7 35 15-49 12-48 (77) 144 d2gena1 a.4.1.9 (A:6-75) Proba 49.3 4.5 0.00032 17.8 2.2 26 26-51 19-44 (70) 145 d1ulya_ a.4.5.58 (A:) Hypothet 48.0 5.4 0.00039 17.2 2.4 23 25-47 30-52 (190) 146 d2oi8a1 a.4.1.9 (A:8-86) Putat 47.9 2.9 0.00021 19.0 1.1 21 27-47 29-49 (79) 147 d1d5ya1 a.4.1.8 (A:3-56) Rob t 46.7 2.5 0.00018 19.3 0.6 23 25-47 17-39 (54) 148 d1d2za_ a.77.1.2 (A:) Pelle de 46.3 7.9 0.00058 16.2 3.8 45 30-74 28-75 (102) 149 d2isya1 a.4.5.24 (A:2-64) Iron 46.2 7.9 0.00058 16.2 3.9 23 25-47 21-43 (63) 150 d2fbka1 a.4.5.28 (A:8-179) Tra 45.9 1 7.6E-05 21.8 -1.5 15 59-73 82-96 (172) 151 d1hw1a1 a.4.5.6 (A:5-78) Fatty 45.2 5.6 0.00041 17.1 2.2 32 15-46 12-46 (74) 152 d1r1ta_ a.4.5.5 (A:) SmtB repr 44.3 7.8 0.00056 16.2 2.8 23 25-47 34-56 (98) 153 d1g2ha_ a.4.1.12 (A:) Transcri 41.8 9.3 0.00067 15.7 3.2 33 14-47 21-53 (61) 154 d3bwga1 a.4.5.6 (A:5-82) Trans 41.8 6.6 0.00048 16.7 2.1 33 14-46 6-41 (78) 155 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 41.6 6.6 0.00048 16.7 2.1 21 53-73 28-48 (73) 156 d2p4wa1 a.4.5.64 (A:1-194) Tra 41.3 9 0.00066 15.8 2.7 28 20-48 22-49 (194) 157 d1sgma1 a.4.1.9 (A:5-77) Putat 40.7 3.5 0.00026 18.4 0.6 24 24-47 19-42 (73) 158 d1le8a_ a.4.1.1 (A:) Mating ty 40.2 6.5 0.00047 16.7 1.9 23 51-73 19-41 (53) 159 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 39.1 6.8 0.0005 16.6 1.8 23 51-73 22-44 (58) 160 d1x2na1 a.4.1.1 (A:6-67) Homeo 39.0 7.6 0.00055 16.3 2.1 21 53-73 29-49 (62) 161 d1e0ga_ d.7.1.1 (A:) Membrane- 38.0 4.5 0.00033 17.7 0.8 23 55-77 9-31 (48) 162 d1jgga_ a.4.1.1 (A:) Even-skip 37.9 8.8 0.00064 15.9 2.3 23 51-73 21-43 (57) 163 d1t33a1 a.4.1.9 (A:1-88) Putat 37.1 9.3 0.00068 15.7 2.3 24 47-74 26-49 (88) 164 d1p4xa1 a.4.5.28 (A:1-125) Sta 36.2 2.4 0.00017 19.5 -0.9 46 18-73 22-67 (125) 165 d1p7ia_ a.4.1.1 (A:) Engrailed 36.0 9 0.00066 15.8 2.1 22 51-72 21-42 (53) 166 d2hs5a1 a.4.5.6 (A:25-93) Puta 35.8 8.2 0.0006 16.1 1.8 19 28-46 26-44 (69) 167 d1zq3p1 a.4.1.1 (P:2-68) Homeo 35.5 10 0.00074 15.5 2.3 22 51-72 23-44 (67) 168 d1b4aa1 a.4.5.3 (A:4-78) Argin 34.8 12 0.00087 15.0 4.2 42 17-68 5-47 (75) 169 d1e3oc1 a.4.1.1 (C:104-160) Oc 34.4 11 0.00078 15.3 2.2 23 51-73 20-42 (57) 170 d1ftta_ a.4.1.1 (A:) Thyroid t 34.3 9.3 0.00068 15.7 1.9 23 51-73 24-46 (68) 171 d1bw5a_ a.4.1.1 (A:) Insulin g 34.2 10 0.00074 15.5 2.1 26 47-73 22-47 (66) 172 d1fjla_ a.4.1.1 (A:) Paired pr 34.1 10 0.00073 15.5 2.1 23 51-73 24-46 (65) 173 d1vnda_ a.4.1.1 (A:) VND/NK-2 33.9 10 0.00074 15.5 2.1 22 51-72 31-52 (77) 174 d1wi3a_ a.4.1.1 (A:) DNA-bindi 33.8 7.6 0.00055 16.3 1.4 24 50-73 29-52 (71) 175 d2np3a1 a.4.1.9 (A:35-99) Puta 33.5 4.4 0.00032 17.8 0.1 32 23-54 12-43 (65) 176 d2craa1 a.4.1.1 (A:7-64) Homeo 33.4 9 0.00066 15.8 1.7 23 51-73 23-45 (58) 177 d2fd5a1 a.4.1.9 (A:1-76) Proba 33.2 3.4 0.00025 18.5 -0.5 25 47-74 21-45 (76) 178 d1aisb2 a.74.1.2 (B:1206-1300) 33.0 13 0.00092 14.8 2.5 11 20-30 8-18 (95) 179 d2iu5a1 a.4.1.9 (A:1-71) Trans 32.9 3.5 0.00025 18.5 -0.5 27 25-51 24-50 (71) 180 d1au7a1 a.4.1.1 (A:103-160) Pi 32.7 11 0.0008 15.3 2.1 23 51-73 21-43 (58) 181 d2cuea1 a.4.1.1 (A:7-74) Paire 32.3 9.4 0.00068 15.7 1.7 23 51-73 23-45 (68) 182 d1r1ua_ a.4.5.5 (A:) Metal-sen 32.2 13 0.00095 14.8 3.6 23 25-47 29-51 (94) 183 d2e1oa1 a.4.1.1 (A:8-64) Homeo 32.0 11 0.00082 15.2 2.0 23 51-73 22-44 (57) 184 d1k61a_ a.4.1.1 (A:) mat alpha 31.6 11 0.00081 15.2 1.9 21 53-73 25-45 (60) 185 d9anta_ a.4.1.1 (A:) Antennape 31.5 12 0.00086 15.0 2.1 23 51-73 19-41 (56) 186 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 30.2 14 0.001 14.6 2.2 23 51-73 30-52 (67) 187 d2ecba1 a.4.1.1 (A:8-83) Zinc 30.0 11 0.00081 15.2 1.7 26 47-73 23-48 (76) 188 d1b72a_ a.4.1.1 (A:) Homeobox 29.9 13 0.00095 14.8 2.1 41 25-73 31-71 (88) 189 d1yz8p1 a.4.1.1 (P:1-60) Pitui 29.8 9.5 0.0007 15.6 1.3 20 52-71 24-43 (60) 190 d1uhsa_ a.4.1.1 (A:) Homeodoma 29.6 13 0.00097 14.7 2.1 28 46-73 19-46 (72) 191 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 29.0 14 0.001 14.6 2.0 23 51-73 43-65 (80) 192 d1ddfa_ a.77.1.2 (A:) Fas {Hum 28.9 4.2 0.0003 17.9 -0.6 43 9-51 7-50 (127) 193 d1s7ea1 a.4.1.1 (A:103-152) He 28.0 6.5 0.00048 16.7 0.3 22 51-72 20-41 (50) 194 d1v4ra1 a.4.5.6 (A:1-100) Tran 28.0 8.1 0.00059 16.1 0.7 17 29-45 35-51 (100) 195 d2ecca1 a.4.1.1 (A:1-76) Homeo 27.6 14 0.001 14.6 1.9 23 51-73 25-47 (76) 196 d1d4ca3 d.168.1.1 (A:360-505) 27.6 16 0.0011 14.3 2.2 22 53-74 81-102 (146) 197 d1pufa_ a.4.1.1 (A:) Homeobox 26.6 16 0.0012 14.2 2.1 23 51-73 35-57 (77) 198 d2p5ka1 a.4.5.3 (A:2-64) Argin 23.5 19 0.0014 13.8 4.1 31 17-47 7-43 (63) 199 d1y7ma2 d.7.1.1 (A:1-48) Hypot 23.3 4.7 0.00034 17.6 -1.2 24 55-78 8-31 (48) 200 d1y0pa3 d.168.1.1 (A:362-504) 22.3 20 0.0014 13.6 2.2 22 52-73 79-100 (143) 201 d1vola1 a.74.1.2 (A:113-207) T 22.2 20 0.0014 13.6 2.5 13 18-30 8-20 (95) 202 d2esna1 a.4.5.37 (A:3-91) Prob 22.1 20 0.0014 13.6 2.2 31 29-70 22-52 (89) 203 d1rr7a_ a.4.1.14 (A:) Middle o 22.0 20 0.0014 13.6 3.6 13 55-67 27-39 (94) 204 d2oa4a1 a.4.12.3 (A:1-93) Unch 20.9 21 0.0015 13.4 1.8 36 27-62 50-90 (93) 205 d2cqxa1 a.4.1.1 (A:8-66) LAG1 20.5 21 0.0016 13.4 3.6 27 47-73 20-46 (59) No 1 >d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]} Probab=99.59 E-value=3.3e-15 Score=114.69 Aligned_cols=70 Identities=24% Similarity=0.419 Sum_probs=64.0 Q ss_pred CCHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC Q ss_conf 99899--99999999999981997999999872469999998528988358999999975499999950677 Q gi|254780424|r 8 PNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144) Q Consensus 8 ~~~~d--~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144) .|.+| ..+|++||.+|+.+||||++||+.+|||+++|++||+|.+.|+.+.|.+||.+|||++++||... T Consensus 2 ~~~~~~~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~~ 73 (77) T d2b5aa1 2 INEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKM 73 (77) T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC T ss_conf 863899999999999999980999999998979799999999869989999999999999698999985423 No 2 >d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} Probab=99.57 E-value=2.7e-15 Score=115.29 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=61.8 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC Q ss_conf 9999999999981997999999872469999998528988358999999975499999950677 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144) .||++||++|+.+||||.+||+.+|||.++|++||+|...|+.+.+.+||++|+||++||+.++ T Consensus 3 ~ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~Ll~gd 66 (66) T d2r1jl1 3 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGD 66 (66) T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHHCC T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC T ss_conf 9999999999985999999999979899999999869989999999999999698899984679 No 3 >d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]} Probab=99.57 E-value=2.5e-15 Score=115.44 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=61.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCHHHHHCCCC Q ss_conf 999999999998199799999987246999999852898-83589999999754999999506774 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFDVSP 78 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~-~ps~~~L~~iA~~l~v~~~~l~~~~~ 78 (144) .||++||++|.++||||.+||+++|||.++|++||+|.+ .|++++|.+||++||||++|||+... T Consensus 1 ~ig~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~v~~~~l~~~~~ 66 (68) T d1b0na2 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKH 66 (68) T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCCTT T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC T ss_conf 979999999998299999999897979999999985998999999999999998986999839988 No 4 >d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=99.57 E-value=1.6e-15 Score=116.76 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=63.5 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCC Q ss_conf 9999999999998199799999987246999999852898835899999997549999995067744 Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 (144) Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144) .+||++||++|+.+||||++||+.+|||+++|++||+|+..|+.+.+.+||++|||+++|||.+.+. T Consensus 7 ~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~ 73 (79) T d1y9qa1 7 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQ 73 (79) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTSTH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC T ss_conf 9999999999998299999999987711648999986998999999999999989879998389961 No 5 >d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]} Probab=99.56 E-value=3e-15 Score=114.93 Aligned_cols=62 Identities=26% Similarity=0.360 Sum_probs=60.1 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH Q ss_conf 99999999999981997999999872469999998528988358999999975499999950 Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144) Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144) +.+|++||++|+.+||||++||+.+|+|.++|++||+|+..|++++|.+||++|+|++++|| T Consensus 8 ~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~lF 69 (69) T d1y7ya1 8 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF 69 (69) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC T ss_conf 99999999999983999999986829989899999879999999999999999695999979 No 6 >d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} Probab=99.54 E-value=5.5e-15 Score=113.30 Aligned_cols=62 Identities=26% Similarity=0.330 Sum_probs=58.8 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC Q ss_conf 999999999998199799999987246999999852898835899999997549999995067 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144) .||+|||++|+.+||||++||+.+|||+++|++||+|.+.|+ +.|.+||++|+|+++||+.| T Consensus 3 ~i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~~~~-~~l~~ia~~l~v~~~~Ll~G 64 (65) T d2croa_ 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYG 64 (65) T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSC-TTHHHHHHHTTSCHHHHHHC T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCH-HHHHHHHHHHCCCHHHHHHC T ss_conf 899999999998499999999997867949998787799999-99999999969989998338 No 7 >d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]} Probab=99.53 E-value=4.6e-15 Score=113.78 Aligned_cols=61 Identities=21% Similarity=0.458 Sum_probs=58.9 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC Q ss_conf 99999999998199799999987246999999852898835899999997549999995067 Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144) Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144) ||+|||.+|+.+||||++||+.+|||.++|++||+|++ |+.+.|.+||++|||+++||+.| T Consensus 2 ig~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~g~~-~~~~~l~~ia~~l~v~~~~l~~G 62 (63) T d1r69a_ 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNG 62 (63) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC-SSCTTHHHHHHHTTCCHHHHHHC T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC-CCHHHHHHHHHHHCCCHHHHHHC T ss_conf 89999999998499699999983739999999878989-49899999999989689998448 No 8 >d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]} Probab=99.52 E-value=3.2e-15 Score=114.78 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=60.4 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCC Q ss_conf 9999999999819979999998724699999985289883589999999754999999506774 Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 (144) Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~ 78 (144) |++|||.+|+.+||||++||.++|||.+++++||+|...|+.+++.+||++||||+++||+..+ T Consensus 2 i~~ri~~lR~~~g~tq~elA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~lf~~~~ 65 (66) T d1utxa_ 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQP 65 (66) T ss_dssp EEECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEEECC T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC T ss_conf 8999999999859999999886355798999998699899999999999997987999829899 No 9 >d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]} Probab=99.47 E-value=3.9e-14 Score=107.83 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=56.8 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC Q ss_conf 9999999999819979999998724699999985289883589999999754999999506 Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144) Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144) +|+.|+..|+++||||++||+++|+|.++|++||+|.+.|+.+.|.+||++|+||+++|+. T Consensus 13 l~~~i~~~R~~~gltq~~lA~~lgis~~~is~~E~g~~~~s~~~l~~ia~~l~v~~~~~~~ 73 (87) T d1lmb3_ 13 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP 73 (87) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHCH T ss_conf 9999999999939999999988672288899998114787599999999998979999874 No 10 >d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]} Probab=99.47 E-value=4.5e-14 Score=107.42 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=59.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC Q ss_conf 9999999998199799999987246999999852898835899999997549999995067 Q gi|254780424|r 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144) Q Consensus 16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144) |++||++|+.+||||.+||+.+|||+++|++||+|++.|+.+.+.+||++|||+++|+++. T Consensus 3 Ge~lke~r~~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~kla~~lgvs~~~~L~l 63 (87) T d2icta1 3 GDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNL 63 (87) T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHH T ss_conf 7999999998699999999997246999999998501798999999999989199999821 No 11 >d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.47 E-value=1.1e-14 Score=111.37 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=60.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC Q ss_conf 999999999999981997999999872469999998528988358999999975499999950677 Q gi|254780424|r 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144) Q Consensus 12 d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144) +..||++||.+|+.+||||++||+.+|||.++|++||+|...|+.+.|.+||.+|||++.++..+. T Consensus 4 ~~~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~G~~~p~~~~l~~la~~l~v~l~~~~~~~ 69 (78) T d1x57a1 4 TLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGK 69 (78) T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTTTTC T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC T ss_conf 489999999999985997267887188789999999806779999999999999099664565789 No 12 >d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=99.46 E-value=9.9e-14 Score=105.24 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=59.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHHCCCCC Q ss_conf 999999999999819979999998724699999985289-8835899999997549999995067744 Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDVSPT 79 (144) Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144) ..||++||.+|+ |+||.+||+++|||.++|++||+|+ ..|++++|.+||++|||++++|+..... T Consensus 13 ~~lG~~ir~~R~--~~t~~eLA~~~Gvs~~~ls~iE~G~~~~ps~~tl~kia~~L~v~~~~Ll~~~~~ 78 (82) T d2ofya1 13 QRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTF 78 (82) T ss_dssp HHHHHHHHHHHT--TSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTCCC T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCC T ss_conf 999999999998--079999998971799999999829867888999999999989889999855478 No 13 >d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]} Probab=99.38 E-value=1.3e-13 Score=104.58 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=62.1 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHHCCCCC Q ss_conf 999999999999819979999998724699999985289-8835899999997549999995067744 Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDVSPT 79 (144) Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144) ..||.+||++|+++||||.++|+++|+++++|++||+|+ ..|++++|.+||++||+++++++...+. T Consensus 10 ~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~~~~~~~~~L~~ia~~Lg~~i~~~~~~~~~ 77 (89) T d2o38a1 10 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIRKKPR 77 (89) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEEECCT T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHEECCCCC T ss_conf 99999999999995999999999997337089999849978986899999999909988870157876 No 14 >d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]} Probab=99.29 E-value=1.1e-12 Score=98.49 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=57.4 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHH Q ss_conf 99999999999819979999998724699999985289-88358999999975499999950 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~ 74 (144) .+|.+|+.+|+.+||||++||+.+||++++||+||+|+ .+|+.++|.+||++||++++..+ T Consensus 6 ~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~g~~~~~s~~~L~~ia~~Lg~~i~~~~ 67 (69) T d2a6ca1 6 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINI 67 (69) T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCC T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 99999999999969999999999874784799997665201008999999999199707651 No 15 >d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]} Probab=99.10 E-value=4.9e-11 Score=87.96 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=50.0 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC Q ss_conf 9999999819979999998724699999985289883589999999754999999506 Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144) Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144) +||.+|+.+||||++||+.+|||.++|++||+|++.|+...+..++ .+...|+.++. T Consensus 3 ~ik~~R~~~gltQ~elA~~lGvs~~tvs~~E~G~~~P~~~~~~ll~-~l~~~Pe~v~~ 59 (62) T d2ppxa1 3 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLK-IIAVDPEGTAA 59 (62) T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHH-HHHHCHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH-HHHCCHHHHHH T ss_conf 8899999969999999999698999999887798899999999999-98669999999 No 16 >d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]} Probab=98.82 E-value=3.2e-09 Score=76.31 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=39.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 9999999998199799999987246999999852898835899 Q gi|254780424|r 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 (144) Q Consensus 16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~ 58 (144) +++++++|+.+||||++||+.+|||+.+|++||+|.+.++... T Consensus 3 ~e~~k~~R~~~gltQ~elA~~LGvs~~ti~~yE~G~r~iP~~v 45 (67) T d2auwa1 3 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTI 45 (67) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH T ss_conf 8999999999599999999995998999999986999999899 No 17 >d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Probab=97.44 E-value=0.00017 Score=46.08 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=55.2 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHCCCCHHHHH Q ss_conf 999999999981997999999872469999998528-988358999999975499999950 Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 (144) Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G-~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144) ..+++|+.|.+..|.-..||..+|-++.++..||+| .-..++..|-+||.+||.++..|. T Consensus 6 fae~lk~rreqvkmdhaalas~lgetpetvaawengeggeltltqlg~ia~~lgtsigalt 66 (71) T d2bnma1 6 FAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALT 66 (71) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCC T ss_conf 8999999999971119999999768906788863588750529998889999714412327 No 18 >d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]} Probab=97.14 E-value=0.00066 Score=42.29 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=61.3 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 9987668998999999999999998199799999987246999999852898835899999997549999995 Q gi|254780424|r 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 1 ~~~~~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) |++-+-.+++. ..+-+.|-..+.++|||-+++|+.+|.|..++.....|....+.+.-.++|+.|+.|.+.. T Consensus 1 m~~~~~~~~~r-~~lte~Il~AK~~kgltw~~IA~~iG~s~vwvtaa~lGQ~~l~~~~A~~l~~~L~L~~e~~ 72 (86) T d1dwka1 1 MIQSQINRNIR-LDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSI 72 (86) T ss_dssp CCCBCSCHHHH-HHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHH T ss_pred CCHHHCCCCHH-HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH T ss_conf 95312044269-9999999999998399899999895988999999984578899999999999749999999 No 19 >d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]} Probab=96.79 E-value=0.0017 Score=39.61 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=55.5 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC Q ss_conf 9999999999819979999998724699999985289883589999999754999999506 Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144) Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144) ||.-+|++|+++++.|-+|-..+ +|++.+-++|-..+.++.+.|.++++.|||+.-.++. T Consensus 3 ig~~lkqir~elnyhqidlysgi-msksiyikveadsrpisveel~kfserlginffeil~ 62 (65) T d2awia1 3 IGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILN 62 (65) T ss_dssp HHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHH T ss_conf 00699999998445675887512-2012699984488864499999899983763999987 No 20 >d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=96.30 E-value=0.0084 Score=35.20 Aligned_cols=56 Identities=16% Similarity=0.377 Sum_probs=41.0 Q ss_pred CCCHHHHH-HHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 89989999-999999999981997999999872------46999999852898835899999997 Q gi|254780424|r 7 IPNPVDIN-VGKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISE 64 (144) Q Consensus 7 ~~~~~d~~-iG~rIr~~R~~~glTQ~eLA~~lG------vs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144) .|++-+.. ..+..|..|..+|+||.+++..+| .|+++|+++|+=. .|...+.++-- T Consensus 3 ~~~l~Ele~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~--LS~kn~~kLkP 65 (75) T d1e3oc2 3 PSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN--LSFKNMSKLKP 65 (75) T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTC--SCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC--CCHHHHHHHHH T ss_conf 8989999999999998788436558999999998717502588999999724--57988998899 No 21 >d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=95.72 E-value=0.014 Score=33.80 Aligned_cols=50 Identities=18% Similarity=0.403 Sum_probs=39.3 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 9999999999981997999999872------469999998528988358999999975 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISEV 65 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lG------vs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144) +..+..|..|..+|+||.+++..+| .|+++|+++|+=. .|...+.++--+ T Consensus 7 ~Fa~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~--LS~kn~~klkPi 62 (72) T d1au7a2 7 QFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQ--LSFKNACKLKAI 62 (72) T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTC--SBHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCC--CCHHHHHHHHHH T ss_conf 99999998774268629999999998618655503778888515--479889988999 No 22 >d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]} Probab=95.36 E-value=0.012 Score=34.30 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=35.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHCCCCHHH Q ss_conf 99799999987246999999852898835899999---99754999999 Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH---ISEVLESPISF 72 (144) Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~---iA~~l~v~~~~ 72 (144) +.|..++|+.+|||.+|+|++-+|....+.++-.+ .++.||--++. T Consensus 1 NvTi~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV~~aa~~lgY~pn~ 49 (57) T d2hsga1 1 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNA 49 (57) T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCH T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCH T ss_conf 9699999989895999999996898867989999999999998869799 No 23 >d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]} Probab=95.35 E-value=0.021 Score=32.67 Aligned_cols=49 Identities=8% Similarity=0.100 Sum_probs=42.2 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 9999999999981997999999872469999998528988358999999 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i 62 (144) .+-+-||.+=...+++|.++|+..|+|.|+||+|-++...++..+-..| T Consensus 28 ~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~g~~M~~~KR~al 76 (94) T d1ic8a2 28 RVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAAL 76 (94) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH T ss_conf 9999999999986885999999980159999999827998517999999 No 24 >d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=95.21 E-value=0.011 Score=34.53 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=35.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHCCCCH Q ss_conf 1997999999872469999998528988358999999---97549999 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI---SEVLESPI 70 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i---A~~l~v~~ 70 (144) +..|..++|+..|||.+++|++-+|...++.++-.+| |+-||--+ T Consensus 1 k~~Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~rI~~~a~~lgY~p 48 (59) T d1efaa1 1 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIP 48 (59) T ss_dssp CCCCHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHHHHHHHHHHTCCC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 988899999897979999999977998679999999999999988986 No 25 >d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=94.90 E-value=0.02 Score=32.76 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=35.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 998999999999999998199799999987246999999852898835 Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144) Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144) -+|+| .+.-++.+- ..|+|++++|+++|+|.++|+++-.=...|. T Consensus 14 L~p~e--~A~a~~~l~-~~g~s~~eiA~~~G~s~~~V~~~l~L~~lp~ 58 (114) T d1r71a_ 14 LTPRE--IADFIGREL-AKGKKKGDIAKEIGKSPAFITQHVTLLDLPE 58 (114) T ss_dssp CCHHH--HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHGGGSCCH T ss_pred CCHHH--HHHHHHHHH-HHCCCHHHHHHHHCCCHHHHHHHHHHHCCCH T ss_conf 99999--999999998-8099899999997772999999999967999 No 26 >d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} Probab=94.86 E-value=0.021 Score=32.67 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=31.9 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9899999999999999819979999998724699999985289 Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 (144) Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144) |||+. +.-.+.+- +.|+||+++|+++|.|+++|++.-+=. T Consensus 4 ~piEe--A~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~LrLl 43 (93) T d1vz0a1 4 SPVEE--ARGYQALL-EMGLTQEEVARRVGKARSTVANALRLL 43 (93) T ss_dssp CHHHH--HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGG T ss_pred CHHHH--HHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 89999--99999999-849999999999851469999999899 No 27 >d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=94.73 E-value=0.02 Score=32.80 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=33.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH---HHHHCCCCHH Q ss_conf 799999987246999999852898835899999---9975499999 Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQH---ISEVLESPIS 71 (144) Q Consensus 29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~---iA~~l~v~~~ 71 (144) |..++|+..|||.+++|++-+|...++.++-.+ +++-||--++ T Consensus 2 Ti~dvA~~agVS~sTVSr~ln~~~~vs~~tr~rV~~~a~~lgY~pn 47 (57) T d1qpza1 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPS 47 (57) T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCC T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 8999999989599999999779985689999999999999888979 No 28 >d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]} Probab=94.57 E-value=0.026 Score=32.06 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=44.5 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC Q ss_conf 99999998199799999987246999999852898835899999997549999995067 Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144) Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144) -|+..=..+|+|..+|+...|++.+++.+.-.. |...-=..||++||+++..++.. T Consensus 13 dI~AaL~krG~sLa~lsr~~gls~stl~naL~r---p~pKgEriIA~aLg~~P~eIWPs 68 (74) T d1nera_ 13 DVIAGLKKRKLSLSALSRQFGYAPTTLANALER---HWPKGEQIIANALETKPEVIWPS 68 (74) T ss_dssp HHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTTS---SCHHHHHHHHHHTTSCHHHHSTT T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHCCCHHHHCCC T ss_conf 999999996887999999909987899999837---78589999999978598895944 No 29 >d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=93.77 E-value=0.027 Score=31.98 Aligned_cols=45 Identities=7% Similarity=0.084 Sum_probs=35.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC------CCHHHHHHHHHHCCCCHHH Q ss_conf 97999999872469999998528988------3589999999754999999 Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPISF 72 (144) Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~------ps~~~L~~iA~~l~v~~~~ 72 (144) +|..++|+.+|||.+|+|++-||... -+.+.+...|+.||-.++. T Consensus 1 vTl~diA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (59) T d1uxda_ 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (59) T ss_dssp CCHHHHHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCS T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH T ss_conf 979999999796999999998499876757999999999999998879699 No 30 >d2ox6a1 a.35.1.6 (A:5-166) Hypothetical protein SO3848 {Shewanella oneidensis [TaxId: 70863]} Probab=93.64 E-value=0.13 Score=27.66 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=45.6 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHCCCC-------HHHHHCCCCCC Q ss_conf 999999981997999999872469999998528988358---9999999754999-------99950677443 Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA---SRLQHISEVLESP-------ISFFFDVSPTV 80 (144) Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~---~~L~~iA~~l~v~-------~~~l~~~~~~~ 80 (144) .|+.+|..+|||.+++|+..+.|..-+-.||.|....+. ..|..|-++.... +..||...+.. T Consensus 7 e~~ylr~slglt~aqv~~l~k~se~dv~aweage~~~~~laqkklleide~iemqvlnt~dgieelfkkepkr 79 (162) T d2ox6a1 7 EMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPELAQKKLLDIDDIIEMQVLNTTDGIEALFKKEPKR 79 (162) T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCC T ss_conf 7999999707789998887455777755355057767527786450188888887752142199997418430 No 31 >d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]} Probab=93.37 E-value=0.089 Score=28.66 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=41.4 Q ss_pred HHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 9999999981997999999872--46999999852898835899999997 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISE 64 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lG--vs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144) --|..+|+..-||-+|-|.-++ ++..+.++||+|...+..+.+..+.. T Consensus 6 ~ELQalR~if~mti~EaA~~I~~~~~s~tWQqWE~Gd~~IP~~Vi~~l~~ 55 (120) T d1s4ka_ 6 LELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE 55 (120) T ss_dssp HHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 99999999999759999999965766899999874898998999999999 No 32 >d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Probab=93.08 E-value=0.048 Score=30.35 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.4 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999998199799999987246999999852 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) +.+|+++ ..|.|..++|..+|||++||.+|-- T Consensus 12 ~~a~~l~-~~G~s~~~iA~~~gVSr~TiYry~p 43 (47) T d1ijwc_ 12 EQISRLL-EKGHPRQQLAIIFGIGVSTLYRYFP 43 (47) T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHSC T ss_pred HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 9999999-8899799999997969999985577 No 33 >d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} Probab=92.68 E-value=0.048 Score=30.38 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=30.2 Q ss_pred HHHHHHHHHH-HCC--CCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999999999-819--9799999987246999999852898 Q gi|254780424|r 15 VGKRIRLRRM-ILG--MSQEKLGECLGITFQQVQKYEKGVN 52 (144) Q Consensus 15 iG~rIr~~R~-~~g--lTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144) +.++++-++. +.| ++|.++|...||+.+||+.|-+.+. T Consensus 10 ~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK~ 50 (66) T d1hlva1 10 FREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50 (66) T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999999808721099999995997647999998799 No 34 >d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=92.46 E-value=0.097 Score=28.41 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=33.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 68998999999999999998199799999987246999999852 Q gi|254780424|r 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 6 ~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) ..|-++| +=+||=++= +.|+|..++|++++||.+++++|-+ T Consensus 12 GrPls~D--LR~Riv~~~-~~G~s~r~aA~rf~VS~s~v~k~l~ 52 (63) T d1k78a1 12 GRPLPDV--VRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILG 52 (63) T ss_dssp TSCCCHH--HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCCHH--HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9859999--999999999-9599899999995977999999999 No 35 >d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]} Probab=92.21 E-value=0.094 Score=28.51 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=33.1 Q ss_pred HHHHHHHHHHH-HCC-CCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999-819-9799999987246999999852898 Q gi|254780424|r 14 NVGKRIRLRRM-ILG-MSQEKLGECLGITFQQVQKYEKGVN 52 (144) Q Consensus 14 ~iG~rIr~~R~-~~g-lTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144) .+++|++-++. ..| +||.++|+.+|||..||++.-+--. T Consensus 43 ~la~R~~ia~~L~~G~~s~reI~~~~gvs~aTItR~s~~Lk 83 (101) T d1jhga_ 43 ALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLK 83 (101) T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999999990896799999996987577889999987 No 36 >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=89.76 E-value=0.25 Score=25.80 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999819979999998724699999985 Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144) .+.+.-++.+|..-.+|..|||+.+|+|.++++++- T Consensus 6 ~N~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l 41 (71) T d1z05a1 6 INAGRVYKLIDQKGPISRIDLSKESELAPASITKIT 41 (71) T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 999999999998599489999999887887899999 No 37 >d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Probab=89.00 E-value=0.12 Score=27.77 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.5 Q ss_pred HHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999---8199799999987246999999852 Q gi|254780424|r 18 RIRLRRM---ILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 18 rIr~~R~---~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) +...++. .-|+|..++|..+||+.++|.+|-+ T Consensus 11 K~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k 45 (89) T d2jn6a1 11 KRDAVALYENSDGASLQQIANDLGINRVTLKNWII 45 (89) T ss_dssp HHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999982998599999997989889999999 No 38 >d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]} Probab=88.26 E-value=0.12 Score=27.76 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=22.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-CCCCCCC Q ss_conf 9979999998724699999985-2898835 Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYE-KGVNRVG 55 (144) Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E-~G~~~ps 55 (144) .=||+++|+.+|||+.++.+|- +++..+. T Consensus 36 kktqeqiAeelGisr~tLyrWrt~dk~FI~ 65 (120) T d2ao9a1 36 KRTQDEMANELGINRTTLWEWRTKNQDFIA 65 (120) T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHH T ss_pred HHHHHHHHHHHCHHHHHHHHHHHCCHHHHH T ss_conf 414999999958018889887606626999 No 39 >d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=87.92 E-value=0.0057 Score=36.28 Aligned_cols=46 Identities=26% Similarity=0.331 Sum_probs=31.9 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCC-HHHHHHHHHHCCCCH Q ss_conf 81997999999872469999998528-98835-899999997549999 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKG-VNRVG-ASRLQHISEVLESPI 70 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G-~~~ps-~~~L~~iA~~l~v~~ 70 (144) ++||||+|.|+.+|.|++.||.+|+. ..++. ...=.++.+.++-|+ T Consensus 3 ~kGltQ~eIA~~LgTSraNIs~IEk~A~eNIekAr~Tl~~~~~l~Ap~ 50 (122) T d1nr3a_ 3 ERGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPV 50 (122) T ss_dssp CCSCSSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCE T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 256779999999776588999999999999999999999999668988 No 40 >d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]} Probab=86.88 E-value=0.27 Score=25.55 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=34.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 9799999987246999999852898835899999997549999995 Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) +-|..+|..+||..++||+|-+|.- |....+..+-+ .||.-+.+ T Consensus 21 ~Gq~k~A~amGv~esqiSRwK~~f~-~q~smlLAvLE-~GV~D~em 64 (78) T d1zs4a1 21 LGTEKTAEAVGVDKSQISRWKRDWI-PKFSMLLAVLE-WGVVDDDM 64 (78) T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHTH-HHHHHHHHHHT-TCCCHHHH T ss_pred HCCHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHH-HCCCCHHH T ss_conf 7204689993998999989987068-89999999999-65670899 No 41 >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Probab=86.79 E-value=0.3 Score=25.24 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999998199799999987246999999852 Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) .+.+.=++.+|..-.+|..+||+.+|+|.++++++-+ T Consensus 5 ~N~~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~ 41 (70) T d1z6ra1 5 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVH 41 (70) T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8999999999994992899999998949999999999 No 42 >d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=85.94 E-value=0.62 Score=23.26 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=31.4 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 8998999999999999998199799999987246999999852 Q gi|254780424|r 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 7 ~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) .|=++| +=++|=++- +.|+++.++|.++|||.+++++|-+ T Consensus 15 rpLs~d--lR~rIv~~~-~~G~s~r~iA~~~~VS~~tV~k~l~ 54 (123) T d1pdnc_ 15 RPLPNN--IRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILN 54 (123) T ss_dssp SCCCHH--HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHH--HHHHHHHHH-HHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 179899--999999999-8048999999998969999999999 No 43 >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=85.59 E-value=0.23 Score=26.06 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=20.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 199799999987246999999852 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) ..+||+++|..+|+|+.++++.-+ T Consensus 28 l~lt~~~lA~~~G~sRetvsr~L~ 51 (69) T d1i5za1 28 IKITRQEIGQIVGCSRETVGRILK 51 (69) T ss_dssp EECCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 178999999897997999999999 No 44 >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Probab=84.94 E-value=0.27 Score=25.55 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 19979999998724699999985 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E 48 (144) ..+||++||..+|+|+.++++.- T Consensus 29 ~~lt~~elA~~~g~sretvsr~l 51 (80) T d3e5ua1 29 MPLSQKSIGEITGVHHVTVSRVL 51 (80) T ss_dssp SCCCHHHHHHHHTCCHHHHHHHH T ss_pred ECCCHHHHHHHHCCCHHHHHHHH T ss_conf 37999999999887788999999 No 45 >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=84.59 E-value=0.27 Score=25.55 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 19979999998724699999985 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E 48 (144) ..+||+++|+.+|+|+.++++.- T Consensus 26 i~lt~~elA~~lg~sr~tvsr~l 48 (73) T d1zyba1 26 FKVKMDDLARCLDDTRLNISKTL 48 (73) T ss_dssp EECCHHHHHHHHTSCHHHHHHHH T ss_pred EECCHHHHHHHHCCCHHHHHHHH T ss_conf 50699999989798899999999 No 46 >d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Probab=84.57 E-value=0.46 Score=24.06 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=27.0 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999998199799999987246999999852 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) +.+=.+|--.|+|++|+|+.+|+|.+++.+.-. T Consensus 27 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~ 59 (71) T d1rp3a2 27 KLVIQLIFYEELPAKEVAKILETSVSRVSQLKA 59 (71) T ss_dssp HHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999986848999999997989999999999 No 47 >d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]} Probab=84.47 E-value=0.25 Score=25.80 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=22.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 7999999872469999998528988358 Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYEKGVNRVGA 56 (144) Q Consensus 29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~ 56 (144) ++..+|+.+|||+++|++| |..-|.. T Consensus 12 ~~~k~A~algis~~AVsqW--Ge~VPe~ 37 (61) T d1rzsa_ 12 TQRAVAKALGISDAAVSQW--KEVIPEK 37 (61) T ss_dssp SHHHHHHHHTCCHHHHHHC--CSBCCHH T ss_pred CHHHHHHHHCCCHHHHHHH--HCCCCHH T ss_conf 7999999969989999988--6307698 No 48 >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Probab=84.14 E-value=0.26 Score=25.62 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 19979999998724699999985 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E 48 (144) ..+||.+||..+|+|+.++++.- T Consensus 28 ~~lt~~eLA~~~G~sretvsr~L 50 (81) T d2gaua1 28 IYLSREELATLSNMTVSNAIRTL 50 (81) T ss_dssp CCCCHHHHHHHTTSCHHHHHHHH T ss_pred ECCCHHHHHHHHCCCHHHHHHHH T ss_conf 06899999999799899999999 No 49 >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Probab=84.09 E-value=0.67 Score=23.03 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=28.0 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 98999999999999998199799999987246999999 Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144) Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144) +.+|.. =|..+....-+|+.++|+.+|+|.+++++ T Consensus 4 D~~D~~---IL~~L~~n~r~s~~~iA~~lgis~~tv~~ 38 (63) T d2cfxa1 4 DQIDLN---IIEELKKDSRLSMRELGRKIKLSPPSVTE 38 (63) T ss_dssp CHHHHH---HHHHHHHCSCCCHHHHHHHHTCCHHHHHH T ss_pred CHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH T ss_conf 899999---99999983999999999998968789999 No 50 >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Probab=83.98 E-value=0.3 Score=25.24 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 19979999998724699999985 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E 48 (144) ..+||+++|..+|+|+.++++.- T Consensus 29 ~~~t~~eiA~~lG~sretvsr~l 51 (80) T d1ft9a1 29 VDFTVEEIANLIGSSRQTTSTAL 51 (80) T ss_dssp ECCCHHHHHHHHCSCHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHH T ss_conf 37899999999798899999999 No 51 >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Probab=83.70 E-value=0.47 Score=24.01 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=24.8 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999999819979999998724699999985 Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144) |+.+|+ ..+|..|||+.+|+|.++++++- T Consensus 5 l~~i~~-~pisr~eLa~~~gls~~TVs~~v 33 (62) T d2hoea1 5 LKRIMK-SPVSRVELAEELGLTKTTVGEIA 33 (62) T ss_dssp HHHHHH-SCBCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHH-CCCCHHHHHHHHCCCHHHHHHHH T ss_conf 999997-89699999999893999999999 No 52 >d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Probab=83.65 E-value=0.3 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.3 Q ss_pred CCCHHHHHHHHHHH-HHHHHHH Q ss_conf 99799999987246-9999998 Q gi|254780424|r 27 GMSQEKLGECLGIT-FQQVQKY 47 (144) Q Consensus 27 glTQ~eLA~~lGvs-~s~is~~ 47 (144) .+||+|||..+|+| +.++++. T Consensus 31 ~lTqeeLA~~lG~s~ReTVsR~ 52 (100) T d2bgca1 31 NLTMQELGYSSGIAHSSAVSRI 52 (100) T ss_dssp CCCHHHHHHHTTCCCHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHH T ss_conf 6699999988387448899999 No 53 >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=83.52 E-value=0.27 Score=25.56 Aligned_cols=30 Identities=33% Similarity=0.248 Sum_probs=24.5 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999981997999999872469999998 Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) -|..+....-+|.++||+.+|||+.+|.+. T Consensus 10 iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~ 39 (63) T d1biaa1 10 LIALLANGEFHSGEQLGETLGMSRAAINKH 39 (63) T ss_dssp HHHHHTTSSCBCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999999789587999999989399999999 No 54 >d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]} Probab=83.42 E-value=0.65 Score=23.12 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=27.6 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999998199799999987246999999852 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) +.+=.+|---|||++|+|+.+|||.+++...-. T Consensus 22 R~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~ 54 (106) T d1s7oa_ 22 MNYIELYYADDYSLAEIADEFGVSRQAVYDNIK 54 (106) T ss_dssp HHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999898999199999999998969999999999 No 55 >d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=83.31 E-value=0.9 Score=22.21 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC Q ss_conf 999999999998199799999987-2469999998528 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKG 50 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G 50 (144) .|-++|++.-+..+++|.-||+.+ |.|+.++|.+-+. T Consensus 13 ~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdLL~~ 50 (87) T d1x2la1 13 EIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILAR 50 (87) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHC T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHC T ss_conf 99999999999949879999999983084789999848 No 56 >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} Probab=83.20 E-value=0.78 Score=22.61 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=25.4 Q ss_pred HHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998------19979999998724699999985 Q gi|254780424|r 16 GKRIRLRRMI------LGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 16 G~rIr~~R~~------~glTQ~eLA~~lGvs~s~is~~E 48 (144) +.-|++++.. -++|+.+||+.+|+++++++++- T Consensus 4 ~~~l~~l~~~~~~~~~~~lt~~eLa~~l~i~~~~vs~~l 42 (85) T d3ctaa1 4 YRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRII 42 (85) T ss_dssp HHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 999999998260158999889999999887887899999 No 57 >d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Probab=82.95 E-value=1.4 Score=21.07 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=41.9 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCCC------HHHHHHHHHHCCCC Q ss_conf 9999999999998199799999987-246999999852898835------89999999754999 Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVG------ASRLQHISEVLESP 69 (144) Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~~~ps------~~~L~~iA~~l~v~ 69 (144) ..|.++|++.=+..+++|+-||+.+ |.|+.++|.+-+..-.|+ .+++.++-+.|+-| T Consensus 13 ~~Ia~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrkpkp~~~~~~sg~e~~~rm~~wL~lP 76 (88) T d2csfa1 13 AAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLP 76 (88) T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSC T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCH T ss_conf 9999999999999497799999999831807799998089995223177889999999998174 No 58 >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=82.57 E-value=0.47 Score=24.02 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=25.3 Q ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999819-979999998724699999985 Q gi|254780424|r 17 KRIRLRRMILG-MSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 17 ~rIr~~R~~~g-lTQ~eLA~~lGvs~s~is~~E 48 (144) +-|..++...+ +|-.+||+.+|||..||.+.= T Consensus 11 ~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi 43 (65) T d1j5ya1 11 SIVRILERSKEPVSGAQLAEELSVSRQVIVQDI 43 (65) T ss_dssp HHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 999999985997859999999798999999999 No 59 >d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=82.02 E-value=0.39 Score=24.52 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 19979999998724699999985 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E 48 (144) ..+||+++|+.+|+|+.++++.- T Consensus 28 i~lt~~elA~~lg~sr~tv~r~L 50 (82) T d2zcwa1 28 LKATHDELAAAVGSVRETVTKVI 50 (82) T ss_dssp EECCHHHHHHHHTCCHHHHHHHH T ss_pred ECCCHHHHHHHHCCCHHHHHHHH T ss_conf 05899999999898899999999 No 60 >d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]} Probab=81.75 E-value=0.95 Score=22.06 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=28.9 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999981997999999872469999998528 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144) ++|++++ ..|+.-.++|..+||+++++.++-+. T Consensus 9 ~~V~~L~-~~G~gat~IAk~lgI~R~SVYR~L~~ 41 (43) T d1gdta1 9 DAVLNMW-QQGLGASHISKTMNIARSTVYKVINE 41 (43) T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS T ss_pred HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999-94898999999979879999999860 No 61 >d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]} Probab=81.75 E-value=1.2 Score=21.46 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCC Q ss_conf 999999999998199799999987-24699999985289 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGV 51 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~ 51 (144) .|.++|++.=+..+++|+-||+.+ |.|+.++|.+-+.. T Consensus 5 eI~~~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~~p 43 (83) T d2o4aa1 5 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKE 43 (83) T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHC T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCC T ss_conf 999999999999497799999999831807799998189 No 62 >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Probab=81.28 E-value=0.72 Score=22.85 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=17.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999981997999999872469999998 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) .-|..+...-++|+.+||+.+|++++++++. T Consensus 34 ~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~ 64 (139) T d2a61a1 34 DILQKIYFEGPKRPGELSVLLGVAKSTVTGL 64 (139) T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCHHH T ss_conf 9999999769989999999839881442699 No 63 >d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]} Probab=81.02 E-value=1 Score=21.84 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=36.2 Q ss_pred HHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 899999999999999-81997999999872469999998528988358999 Q gi|254780424|r 10 PVDINVGKRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144) Q Consensus 10 ~~d~~iG~rIr~~R~-~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144) +-+..|++.|..-.. -..+|-.+||+.+|||.++|.++.+.----.+.-+ T Consensus 18 ~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~ 68 (83) T d2o3fa1 18 PSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDL 68 (83) T ss_dssp HHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHH T ss_pred HHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH T ss_conf 999999999982999998831999999979899899999999589989999 No 64 >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Probab=80.91 E-value=0.58 Score=23.46 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=11.6 Q ss_pred CCHHHHHHHHHHHHHHHHHH Q ss_conf 97999999872469999998 Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 28 lTQ~eLA~~lGvs~s~is~~ 47 (144) +|+.+||+.+|++++++++. T Consensus 37 ~t~~eLa~~~~i~~~tvs~~ 56 (109) T d2d1ha1 37 ITSEELADIFKLSKTTVENS 56 (109) T ss_dssp EEHHHHHHHHTCCHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHH T ss_conf 88999999988567699999 No 65 >d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Probab=80.48 E-value=0.98 Score=21.99 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=39.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC-----CCCCCHHHHHHHHHHCC Q ss_conf 999999999998199799999987-2469999998528-----98835899999997549 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKG-----VNRVGASRLQHISEVLE 67 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G-----~~~ps~~~L~~iA~~l~ 67 (144) .|-++|++.-+..+++|+-||+.+ |.|+.++|.+-+. +..+.-+.+.++-+.|+ T Consensus 6 ~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~kPKPW~~l~~gre~y~RM~~wL~ 65 (80) T d1s7ea2 6 EVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQ 65 (80) T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHTSSSCSSHHHHHTTSCCTTCCCSSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHC T ss_conf 999999999999598799999999743807899988399970321325699999999983 No 66 >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=80.05 E-value=1.1 Score=21.64 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=27.7 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 98999999999999998199799999987246999999 Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144) Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144) |.+|.. =|+.+...--+|..++|+++|+|.++++. T Consensus 2 D~~D~~---Il~~L~~n~r~s~~eiA~~l~ls~~~v~~ 36 (60) T d2cyya1 2 DEIDKK---IIKILQNDGKAPLREISKITGLAESTIHE 36 (60) T ss_dssp CHHHHH---HHHHHHHCTTCCHHHHHHHHCSCHHHHHH T ss_pred CHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH T ss_conf 889999---99999982899999999998939999999 No 67 >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Probab=79.90 E-value=1.3 Score=21.17 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=29.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998999999999999998199799999987246999999 Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144) Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144) -+.+|.. =|+.+...-.+|..++|+++|+|.+++.. T Consensus 3 lD~~D~~---IL~~L~~~~r~s~~eiA~~l~ls~~~v~~ 38 (63) T d2cg4a1 3 IDNLDRG---ILEALMGNARTAYAELAKQFGVSPETIHV 38 (63) T ss_dssp CCHHHHH---HHHHHHHCTTSCHHHHHHHHTSCHHHHHH T ss_pred CCHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH T ss_conf 8889999---99999983899999999998939999999 No 68 >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Probab=78.44 E-value=0.92 Score=22.14 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=20.4 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999981997999999872469999998 Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) -|..+-..-++|+.+||+.+|++++++++. T Consensus 37 iL~~l~~~~~~t~~~La~~l~i~~~~vs~~ 66 (140) T d2etha1 37 AFLYVALFGPKKMKEIAEFLSTTKSNVTNV 66 (140) T ss_dssp HHHHHHHHCCBCHHHHHHHTTSCHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999999869959999999989698799999 No 69 >d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]} Probab=77.41 E-value=1.1 Score=21.72 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=26.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999819979999998724699999985 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144) +.+=.+|-.-|||..|.|+.+|||.+++..-- T Consensus 24 R~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l 55 (106) T d1xsva_ 24 RNYLELFYLEDYSLSEIADTFNVSRQAVYDNI 55 (106) T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999908759999999895999999999 No 70 >d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=77.35 E-value=1.8 Score=20.26 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC Q ss_conf 9999999999998199799999987-2469999998528 Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKG 50 (144) Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G 50 (144) ..|.++|++.=+..+++|+-||+.+ |.|+.+++.+-+. T Consensus 30 ~~Ia~~v~~~L~~~~I~Q~~Fa~~VL~rSQGtlSdLL~~ 68 (111) T d1wh8a_ 30 YSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSR 68 (111) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHS T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHC T ss_conf 999999999999858329999999980082789999838 No 71 >d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} Probab=77.29 E-value=1.2 Score=21.46 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=26.2 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999819979999998724699999985 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144) +.+=.+|--.|+|++|+|+.+|+|.+++...- T Consensus 24 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l 55 (68) T d1or7a1 24 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRI 55 (68) T ss_dssp HHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999909899999999894999999999 No 72 >d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]} Probab=76.76 E-value=1.3 Score=21.30 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.8 Q ss_pred HHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999----81997999999872469999998528 Q gi|254780424|r 18 RIRLRRM----ILGMSQEKLGECLGITFQQVQKYEKG 50 (144) Q Consensus 18 rIr~~R~----~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144) .|=..|- ...+|+.|+|+.+|||...+.++|+- T Consensus 15 ~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~~~ 51 (61) T d1ku3a_ 15 MVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 51 (61) T ss_dssp HHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999984778999778999889979889999999999 No 73 >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Probab=76.26 E-value=0.79 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=17.0 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999981997999999872469999998 Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) |..+...-|+||.+||+.+|++++++++. T Consensus 35 L~~i~~~~~~t~~~la~~l~i~~~tvs~~ 63 (144) T d1lj9a_ 35 LVRVCENPGIIQEKIAELIKVDRTTAARA 63 (144) T ss_dssp HHHHHHSTTEEHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99998289989999999878247169999 No 74 >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Probab=75.76 E-value=1.2 Score=21.31 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=11.4 Q ss_pred CCHHHHHHHHHHHHHHHHH Q ss_conf 9799999987246999999 Q gi|254780424|r 28 MSQEKLGECLGITFQQVQK 46 (144) Q Consensus 28 lTQ~eLA~~lGvs~s~is~ 46 (144) +||.+||+.+|++++++++ T Consensus 46 it~~ela~~~~~~~~~vs~ 64 (135) T d3broa1 46 VLQRDLESEFSIKSSTATV 64 (135) T ss_dssp CBHHHHHHHHTCCHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHH T ss_conf 9999999998968868999 No 75 >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=75.71 E-value=1.1 Score=21.66 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=24.0 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999998199799999987246999999 Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144) Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144) =|+.+...--+|..++|+.+|+|.+++.. T Consensus 8 Il~~L~~n~r~s~~~lA~~~gls~~~v~~ 36 (60) T d1i1ga1 8 ILEILEKDARTPFTEIAKKLGISETAVRK 36 (60) T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHH T ss_conf 99999884999999999998929999999 No 76 >d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=75.26 E-value=1.9 Score=20.09 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC Q ss_conf 9999999999998199799999987-2469999998528 Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKG 50 (144) Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G 50 (144) ..|-++|++.=+..+++|+-||+.+ |.|+.++|.+-+. T Consensus 20 ~~I~~~v~~eL~~~~IsQ~~Fa~~VL~rSQGtlSdLL~~ 58 (101) T d1wh6a_ 20 LELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSR 58 (101) T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHS T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHC T ss_conf 999999999999949769999999981081789999847 No 77 >d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]} Probab=75.24 E-value=1.2 Score=21.33 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=28.3 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999998199799999987246999999852898835 Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144) Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144) |.++=.+.| |...|+.+||.+++||+--+-.+++. T Consensus 7 L~dyv~~~G--QaKaA~~LGv~Q~AIsKAira~R~I~ 41 (61) T d1d1la_ 7 LKDYAMRFG--QTKTAKDLGVYQSAINKAIHAGRKIF 41 (61) T ss_dssp HHHHHHHHC--HHHHHHHHTCCTHHHHHHHHTTCCEE T ss_pred HHHHHHHHC--HHHHHHHCCCCHHHHHHHHHCCCEEE T ss_conf 999999977--59899982964889999996388279 No 78 >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Probab=74.29 E-value=0.89 Score=22.26 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=14.4 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999981997999999872469999998 Q gi|254780424|r 20 RLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 20 r~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ..+-..-|+|+.+||+.+|++++++++. T Consensus 43 ~~l~~~~~~t~~~la~~l~~~~~~vsr~ 70 (141) T d1lnwa_ 43 KLIDEQRGLNLQDLGRQMCRDKALITRK 70 (141) T ss_dssp HHHHSSTTCBHHHHHHHTTCCHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999879989999999978457379999 No 79 >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Probab=73.93 E-value=2.5 Score=19.34 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=9.8 Q ss_pred CCHHHHHHHHHHHHHHHHH Q ss_conf 9799999987246999999 Q gi|254780424|r 28 MSQEKLGECLGITFQQVQK 46 (144) Q Consensus 28 lTQ~eLA~~lGvs~s~is~ 46 (144) +|+.+||+.+|++++++++ T Consensus 50 ~t~~~La~~~~~~~~~vs~ 68 (145) T d2hr3a1 50 VTPSELAAAERMRSSNLAA 68 (145) T ss_dssp BCHHHHHHHTTCCHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHH T ss_conf 7999999997989889999 No 80 >d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]} Probab=73.51 E-value=0.97 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 1997999999872469999998528 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKG 50 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G 50 (144) ..+|++++|+.+|||+..|.++|.- T Consensus 24 ~~~tl~eI~~~lgiSrerVrqie~~ 48 (68) T d2p7vb1 24 TDYTLEEVGKQFDVTRERIRQIEAK 48 (68) T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 8688999999979789999999999 No 81 >d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]} Probab=73.51 E-value=0.54 Score=23.64 Aligned_cols=23 Identities=13% Similarity=0.543 Sum_probs=19.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 99799999987246999999852 Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~ 49 (144) .+++.+||+..|||..||.+|=+ T Consensus 2 ~Vnk~~lA~iFGVS~~TI~~W~~ 24 (68) T d1j9ia_ 2 EVNKKQLADIFGASIRTIQNWQE 24 (68) T ss_dssp EEEHHHHHHHTTCCHHHHHHHTT T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 46899999996998899999998 No 82 >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Probab=72.28 E-value=1.8 Score=20.33 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=12.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99998199799999987246999999 Q gi|254780424|r 21 LRRMILGMSQEKLGECLGITFQQVQK 46 (144) Q Consensus 21 ~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144) .+-..-++|+.+||+.+|++++++++ T Consensus 42 ~l~~~~~~t~~ela~~~~i~~~~vs~ 67 (138) T d1jgsa_ 42 SIRCAACITPVELKKVLSVDLGALTR 67 (138) T ss_dssp HHHHHSSBCHHHHHHHHTCCHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHH T ss_conf 68718098999999997878857999 No 83 >d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]} Probab=72.02 E-value=1.1 Score=21.65 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=33.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHC-CCCCCCH--------------H--HHHHHHHHCCCCHHHH Q ss_conf 9799999987246999999852-8988358--------------9--9999997549999995 Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEK-GVNRVGA--------------S--RLQHISEVLESPISFF 73 (144) Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~-G~~~ps~--------------~--~L~~iA~~l~v~~~~l 73 (144) |+-.|+|+.+|||.+||-.||+ |--.|.. . .+.+....+|+|+..+ T Consensus 1 m~Ige~A~~~gvs~~TlR~Ye~~GLl~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~sl~eI 63 (127) T d1q06a_ 1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEES 63 (127) T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 978999999892999999999927988876577676145199999999999999869999999 No 84 >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Probab=71.83 E-value=0.92 Score=22.16 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=20.3 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999981997999999872469999998 Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) -|..+...-|+||.+||+.+|++++++++. T Consensus 38 vL~~l~~~~~~t~~~La~~~~i~~~~vsr~ 67 (137) T d1z91a1 38 ALLLLWEHETLTVKKMGEQLYLDSGTLTPM 67 (137) T ss_dssp HHHHHHHHSEEEHHHHHHTTTCCHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999987589998999999979688889799 No 85 >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=71.42 E-value=2.5 Score=19.41 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=19.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 9999999998199799999987246999999852898835899999997549999995 Q gi|254780424|r 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) |+-++.++. .|+|-.+..-. ..-+++|..+ ...||+.+|++.... T Consensus 7 ~~l~~~L~~-lGlt~~e~~v~-------~~L~~~g~~t-----~~eia~~~~i~~~~v 51 (109) T d1sfxa_ 7 GELVKALEK-LSFKPSDVRIY-------SLLLERGGMR-----VSEIARELDLSARFV 51 (109) T ss_dssp HHHHHHHHH-TCCCHHHHHHH-------HHHHHHCCBC-----HHHHHHHHTCCHHHH T ss_pred HHHHHHHHH-CCCCHHHHHHH-------HHHHHCCCCC-----HHHHHHHHCCCCCHH T ss_conf 999999998-59999999999-------9988238998-----999999857983559 No 86 >d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]} Probab=71.30 E-value=2.4 Score=19.51 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=22.5 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999981997999999872469999998 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ..|+..=..-+..|.+.|+.+|+|++++.+. T Consensus 52 ~~i~~aL~~~~gn~~~aA~~LGisR~tL~~k 82 (89) T d1etxa_ 52 PLLDMVMQYTRGNATRAALMMGINRGTLRKK 82 (89) T ss_dssp HHHHHHHHHTTTCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999999992996999999989789999999 No 87 >d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]} Probab=70.63 E-value=1.2 Score=21.53 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=33.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHC-CCCCCCH--------------HH--HHHHHHHCCCCHHHHH Q ss_conf 99799999987246999999852-8988358--------------99--9999975499999950 Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEK-GVNRVGA--------------SR--LQHISEVLESPISFFF 74 (144) Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~-G~~~ps~--------------~~--L~~iA~~l~v~~~~l~ 74 (144) .+|-.|+|+.+|||.++|-.||+ |--.|.. .. +.+..+.+|+|++.+- T Consensus 2 ~ytI~e~A~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~~~~l~~I~~lr~~G~sl~eI~ 66 (109) T d1r8da_ 2 KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIK 66 (109) T ss_dssp CBCHHHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 62299999998969999999988689587655776504562999999999999998699999999 No 88 >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Probab=70.34 E-value=1.3 Score=21.11 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=10.0 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 998728999999999999999999 Q gi|254780424|r 105 RYFIQIDDVKVRQKIIELVRSIVS 128 (144) Q Consensus 105 ~~~~~l~~~~~r~~i~~l~~~l~~ 128 (144) ..|..+++.+ ...+..+++.+.. T Consensus 116 ~~~~~l~~~e-~~~l~~~l~kl~~ 138 (143) T d1s3ja_ 116 RYLSFLTEEE-MLQAAHITAKLAQ 138 (143) T ss_dssp HHHTTSCHHH-HHHHHHHHHHHHH T ss_pred HHHHCCCHHH-HHHHHHHHHHHHH T ss_conf 9985899999-9999999999999 No 89 >d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]} Probab=70.21 E-value=2.6 Score=19.29 Aligned_cols=34 Identities=9% Similarity=-0.000 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999981997999999872469999998 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) .=-+.|...=...|..+.+.|+.+|||++++.+- T Consensus 20 ~Er~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rk 53 (60) T d1umqa_ 20 VRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRI 53 (60) T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999999999996685999999989889999999 No 90 >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Probab=69.97 E-value=1.5 Score=20.76 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=15.2 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999981997999999872469999998 Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) |..+...-|+|+.++|+.+|++++++++. T Consensus 47 L~~l~~~~~~t~~~la~~~~l~~~tvs~~ 75 (162) T d2fxaa1 47 LWIAYQLNGASISEIAKFGVMHVSTAFNF 75 (162) T ss_dssp HHHHHHHTSEEHHHHHHHTTCCHHHHHHH T ss_pred HHHHCCCCCCCHHHHHHHHCCCCHHHHHH T ss_conf 96521189918999999976994031998 No 91 >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Probab=69.80 E-value=1.5 Score=20.71 Aligned_cols=15 Identities=0% Similarity=-0.237 Sum_probs=8.6 Q ss_pred HHHHHHHCCCCHHHH Q ss_conf 999997549999995 Q gi|254780424|r 59 LQHISEVLESPISFF 73 (144) Q Consensus 59 L~~iA~~l~v~~~~l 73 (144) ...||+.++++...+ T Consensus 47 ~~~la~~~~i~~~~v 61 (136) T d2fbia1 47 SYQLANQACILRPSM 61 (136) T ss_dssp HHHHHHHTTCCHHHH T ss_pred HHHHHHHHCCCHHHH T ss_conf 999999988789889 No 92 >d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]} Probab=69.58 E-value=1.6 Score=20.66 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.6 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 98199799999987246999999852 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) ...|+|..++|+.+|+|..++..+-. T Consensus 18 l~~G~s~~eIA~~l~iS~~TV~~~~~ 43 (67) T d1a04a1 18 IAQGLPNKMIARRLDITESTVKVHVK 43 (67) T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99679989999997888889999999 No 93 >d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Probab=69.28 E-value=2.9 Score=19.01 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=4.2 Q ss_pred HHHHHHHCCCCH Q ss_conf 999999819979 Q gi|254780424|r 19 IRLRRMILGMSQ 30 (144) Q Consensus 19 Ir~~R~~~glTQ 30 (144) |.++=..+|++. T Consensus 9 I~~~~~~L~L~~ 20 (98) T d1aisb1 9 LDRITAQLKLPR 20 (98) T ss_dssp HHHHHHHHTCCH T ss_pred HHHHHHHCCCCH T ss_conf 999998859699 No 94 >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Probab=69.23 E-value=1.5 Score=20.84 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=12.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 997999999872469999998 Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144) |+||.+||+.+|++++++++. T Consensus 43 ~~t~~~la~~~~~~~~~vs~~ 63 (137) T d2fbha1 43 SPTQRELAQSVGVEGPTLARL 63 (137) T ss_dssp CCBHHHHHHHHTCCHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHH T ss_conf 976999999989789899999 No 95 >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=69.03 E-value=1.1 Score=21.75 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=12.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 997999999872469999998 Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144) ++|+.++|+.+|+|++++++. T Consensus 41 plt~~ela~~l~vsk~~vs~~ 61 (151) T d1ku9a_ 41 PLTISDIMEELKISKGNVSMS 61 (151) T ss_dssp CEEHHHHHHHHTCCHHHHHHH T ss_pred CCCHHHHHHHHCCCCCHHHHH T ss_conf 928999999867770249999 No 96 >d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]} Probab=66.78 E-value=1.7 Score=20.51 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.6 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 81997999999872469999998528 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKG 50 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144) ...+|+.++|+.+|||+..|.++|.- T Consensus 36 ~~~~tl~eI~~~lgiSrERVRQie~~ 61 (87) T d1ttya_ 36 GKPKTLEEVGQYFNVTRERIRQIEVK 61 (87) T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99688999999959889999999999 No 97 >d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]} Probab=66.63 E-value=1.2 Score=21.50 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=29.2 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC Q ss_conf 819979999998724699999985289883589999999754 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144) -.++|-.++|+++|||++++.++=.++...-...+..+.+-+ T Consensus 21 ~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~~~~~~~~ 62 (68) T d1z0xa1 21 LEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHF 62 (68) T ss_dssp GGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTC T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHC T ss_conf 231679999998772656899962999999999999999654 No 98 >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=66.13 E-value=1.2 Score=21.40 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=23.6 Q ss_pred HHHHHH-HCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999999-819979999998724699999985 Q gi|254780424|r 19 IRLRRM-ILGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 19 Ir~~R~-~~glTQ~eLA~~lGvs~s~is~~E 48 (144) |..+.. ..++|..|+|+.+|+++++++++- T Consensus 11 L~~~a~~~~~~s~~eia~~~~~~~st~~rll 41 (75) T d1mkma1 11 LDFIVKNPGDVSVSEIAEKFNMSVSNAYKYM 41 (75) T ss_dssp HHHHHHCSSCBCHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999857999899999999791999999999 No 99 >d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]} Probab=65.56 E-value=0.6 Score=23.36 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=18.9 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 819979999998724699999985289883 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144) -.++|-.++|+.+|||++++.+|=.++... T Consensus 22 ~~~~ti~~Ia~~agvs~~s~y~~F~~K~~l 51 (79) T d2fbqa1 22 FAETSLRLITSKAGVNLAAVNYHFGSKKAL 51 (79) T ss_dssp STTCCHHHHHHHHTSCHHHHHHHTCSHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHH T ss_conf 350409999999882855787877699999 No 100 >d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=65.43 E-value=1 Score=21.80 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=25.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 199799999987246999999852898835899999997 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144) .++|-.++|+.+|||++++.+|=.++...-...+..... T Consensus 25 ~~~s~~~Ia~~agvs~~~lY~~F~~K~~L~~~~~~~~~~ 63 (77) T d2gfna1 25 SAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGD 63 (77) T ss_dssp GGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 405799999987888779988883999999999999999 No 101 >d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]} Probab=65.27 E-value=2.9 Score=18.99 Aligned_cols=46 Identities=9% Similarity=0.084 Sum_probs=32.5 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHCCC Q ss_conf 9981997999999872469999998528----988358999999975499 Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKG----VNRVGASRLQHISEVLES 68 (144) Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G----~~~ps~~~L~~iA~~l~v 68 (144) -...|+|-.++|+.+|+|..++..+-+. ....+...+...|...|+ T Consensus 33 ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~~~~~~~lv~~a~~~gl 82 (87) T d1p4wa_ 33 LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM 82 (87) T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC T ss_conf 99928999999878697999999999999998499999999999999689 No 102 >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=65.12 E-value=2.9 Score=18.94 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=25.5 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 989999999999999981997999999872469999998 Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ||...+| +..+-..-++|+.+||+.+|++++++++. T Consensus 15 ~p~r~~I---L~~L~~~~~~~~~eLa~~l~is~~~vs~~ 50 (100) T d1ub9a_ 15 NPVRLGI---MIFLLPRRKAPFSQIQKVLDLTPGNLDSH 50 (100) T ss_dssp SHHHHHH---HHHHHHHSEEEHHHHHHHTTCCHHHHHHH T ss_pred CHHHHHH---HHHHCCCCCEEHHHHHHHHHHCCCCCCHH T ss_conf 9999999---98760479901999999986254323099 No 103 >d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]} Probab=64.11 E-value=1.9 Score=20.17 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=18.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 19979999998724699999985289 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGV 51 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144) .++|..++|+++|||++++.+|=.++ T Consensus 26 ~~~t~~~Ia~~agvs~~t~y~~F~sK 51 (78) T d2o7ta1 26 DSLTMENIAEQAGVGVATLYRNFPDR 51 (78) T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSH T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCH T ss_conf 40679999988399887999988699 No 104 >d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]} Probab=63.44 E-value=2.3 Score=19.58 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=23.1 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 981997999999872469999998528 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKG 50 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144) ...|+|-+|.|+.+|+|.+|+..+-+. T Consensus 16 ~~~G~s~~eIA~~L~is~~TV~~~~~~ 42 (67) T d1fsea_ 16 LVQDKTTKEIASELFISEKTVRNHISN 42 (67) T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 983698999999988888899999999 No 105 >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Probab=62.93 E-value=2.4 Score=19.51 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=8.9 Q ss_pred HHHHHHHCCCCHHHH Q ss_conf 999997549999995 Q gi|254780424|r 59 LQHISEVLESPISFF 73 (144) Q Consensus 59 L~~iA~~l~v~~~~l 73 (144) +..||+.++++...+ T Consensus 52 ~~~la~~l~~~~~tv 66 (115) T d2frha1 52 LKDIINHLNYKQPQV 66 (115) T ss_dssp HHHHHHHSSSHHHHH T ss_pred HHHHHHHHCCCHHHH T ss_conf 999999979788689 No 106 >d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=61.98 E-value=3.1 Score=18.76 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=23.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 1997999999872469999998528988358999 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144) .|-.=+.||.++|++...|..+++.. .|+...| T Consensus 20 dg~dWr~LA~~LGl~~~~I~~i~~~~-spt~~lL 52 (85) T d1ngra_ 20 NGDTWRHLAGELGYQPEHIDSFTHEA-CPVRALL 52 (85) T ss_dssp CTTHHHHHHHHTTCCHHHHHHHHHSS-CHHHHHH T ss_pred CCCCHHHHHHHCCCCHHHHHHHHCCC-CHHHHHH T ss_conf 77879999989397999998987289-8699999 No 107 >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Probab=61.80 E-value=2.4 Score=19.47 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=10.3 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 998728999999999999999999 Q gi|254780424|r 105 RYFIQIDDVKVRQKIIELVRSIVS 128 (144) Q Consensus 105 ~~~~~l~~~~~r~~i~~l~~~l~~ 128 (144) ..+..+++.+ .+.+..+++.+.. T Consensus 113 ~~~~~l~~ee-~~~~~~~L~~i~~ 135 (140) T d3deua1 113 EILAGISSEE-IELLIKLIAKLEH 135 (140) T ss_dssp HHHTTCCHHH-HHHHHHHHHHHHH T ss_pred HHHHCCCHHH-HHHHHHHHHHHHH T ss_conf 9994899999-9999999999999 No 108 >d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Probab=61.75 E-value=2.5 Score=19.34 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.9 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 98199799999987246999999852 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) ...|+|-.++|..+|+|..|+..+=. T Consensus 24 l~~G~s~~eIA~~l~iS~~TV~~~~~ 49 (70) T d1yioa1 24 TIRGLMNKQIAGELGIAEVTVKVHRH 49 (70) T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 98289999999897979999999999 No 109 >d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]} Probab=61.63 E-value=1.6 Score=20.53 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=32.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHC-CCCCCCH---------------HH--HHHHHHHCCCCHHHH Q ss_conf 9799999987246999999852-8988358---------------99--999997549999995 Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEK-GVNRVGA---------------SR--LQHISEVLESPISFF 73 (144) Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~-G~~~ps~---------------~~--L~~iA~~l~v~~~~l 73 (144) +|-.|+|+.+|||..+|-.||+ |--.|.. .. ..+..+.+|+|+..+ T Consensus 4 ytI~evA~~~gvs~~tlR~Ye~~GLl~P~~~r~~~gyR~Y~~~~l~~l~~I~~lr~~g~sl~eI 67 (118) T d1r8ea1 4 YSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEM 67 (118) T ss_dssp EEHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 0199999998969999999998588553453699994035488999999999999969999999 No 110 >d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]} Probab=61.33 E-value=2.6 Score=19.26 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=25.4 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999998199799999987246999999852898 Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 (144) Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144) ..+=.-+--.++|-.++|+++|||++++.+|=.++. T Consensus 14 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~k~ 49 (69) T d2fq4a1 14 YELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKA 49 (69) T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 999998392407799999997858879999987999 No 111 >d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]} Probab=61.10 E-value=2 Score=19.93 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=23.0 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 981997999999872469999998528988358999 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144) --.++|..++|+.+|||++++.++=.++...-...+ T Consensus 21 G~~~~s~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~ 56 (74) T d1v7ba1 21 SLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMH 56 (74) T ss_dssp CSTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHH T ss_conf 956357999998849692238550799999999999 No 112 >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Probab=60.31 E-value=0.98 Score=21.96 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=6.9 Q ss_pred HHHHHHHCCCCH Q ss_conf 999997549999 Q gi|254780424|r 59 LQHISEVLESPI 70 (144) Q Consensus 59 L~~iA~~l~v~~ 70 (144) ...||+.++++. T Consensus 51 ~~~la~~l~~~~ 62 (136) T d2bv6a1 51 VKKVVTELALDT 62 (136) T ss_dssp HHHHHHHTTCCT T ss_pred HHHHHHHHCCCH T ss_conf 999999979788 No 113 >d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]} Probab=59.45 E-value=3 Score=18.89 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=24.1 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9819979999998724699999985289883 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144) --.++|-.++|+.+|||++++.+|=.++... T Consensus 21 G~~~~si~~Ia~~agvs~~~~Y~~F~~K~~L 51 (73) T d2fx0a1 21 GYEGTSIQEIAKEAKVNVAMASYYFNGKENL 51 (73) T ss_dssp CTTTCCHHHHHHHHTSCHHHHHHHHTSHHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH T ss_conf 9351769999998784864999888499999 No 114 >d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]} Probab=58.36 E-value=3.1 Score=18.73 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=25.1 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999999819979999998724699999985289883 Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144) Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144) +=.-+--.++|-.++|+.+|||++++.+|=.++... T Consensus 12 lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~L 47 (69) T d2i10a1 12 LFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDL 47 (69) T ss_dssp HHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH T ss_conf 999879062779999998687862998888599999 No 115 >d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]} Probab=58.25 E-value=2.2 Score=19.73 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=12.9 Q ss_pred HHHCCCCCCCHHHHHHHHHHCCCCHHHHHC Q ss_conf 985289883589999999754999999506 Q gi|254780424|r 46 KYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144) Q Consensus 46 ~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144) -++.|-...+ +..||+..||+..-|+. T Consensus 24 ~~~~G~~~~t---i~~Ia~~agvs~~t~Y~ 50 (81) T d1rkta1 24 FKRKGFELTT---MKDVVEESGFSRGGVYL 50 (81) T ss_dssp HHHHCSTTCC---HHHHHHHHTSCHHHHHT T ss_pred HHHHCCCCCC---HHHHHHHHCCCHHHHHH T ss_conf 9985925177---99999986949889988 No 116 >d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Probab=57.90 E-value=3.2 Score=18.66 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=22.8 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 981997999999872469999998528 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKG 50 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144) ...|+|-+|.|+.+|+|.+++..+-+. T Consensus 16 ~~~G~s~~eIA~~l~iS~~TV~~~~~~ 42 (65) T d1l3la1 16 IAVGKTMEEIADVEGVKYNSVRVKLRE 42 (65) T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 993698889999978889999999999 No 117 >d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]} Probab=57.87 E-value=1.4 Score=21.05 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=19.7 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 8199799999987246999999852898835 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144) -.++|-.++|+.+|||++++.+|=.++...= T Consensus 21 ~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~ 51 (73) T d1t56a1 21 LADISVDDLAKGAGISRPTFYFYFPSKEAVL 51 (73) T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHH T ss_conf 1507799999986988889988884999999 No 118 >d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]} Probab=57.33 E-value=2.2 Score=19.70 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=19.3 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 81997999999872469999998528988 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNR 53 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ 53 (144) -.|+|..++|+.+|||++++.+|=.++.. T Consensus 22 ~~~~s~~~Ia~~agvs~~~iY~~F~sK~~ 50 (74) T d2g7sa1 22 YNSFSYADISQVVGIRNASIHHHFPSKSD 50 (74) T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHCSSHHH T ss_pred CCCCCHHHHHHHHCCCCCHHHHHCCCHHH T ss_conf 15067999999878184169888839999 No 119 >d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]} Probab=57.00 E-value=3.5 Score=18.46 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=14.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 1997999999872469999998528 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKG 50 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G 50 (144) .++|-.++|+.+|||++++.+|=.+ T Consensus 24 ~~~t~~~Ia~~agvs~~~~y~~F~~ 48 (75) T d3c07a1 24 DRTTMRAIAQEAGVSVGNAYYYFAG 48 (75) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSS T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC T ss_conf 4077999999879398799989859 No 120 >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Probab=56.56 E-value=2.1 Score=19.90 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=20.7 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 8199799999987246999999852 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144) ...+|.++||+.+|+|+++++++=+ T Consensus 17 ~~~~tl~~lA~~~~~s~~~l~r~Fk 41 (54) T d1bl0a1 17 ESPLSLEKVSERSGYSKWHLQRMFK 41 (54) T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 7999999999998939999999999 No 121 >d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=56.38 E-value=3.5 Score=18.46 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=16.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9979999998724699999985289 Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGV 51 (144) Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144) |.|-.++|+.+|||++++.+|=.++ T Consensus 20 ~~t~~~Ia~~agvs~~~~Y~~F~~K 44 (70) T d2hkua1 20 GVPITQICAAAGAHPNQVTYYYGSK 44 (70) T ss_dssp TSCHHHHHHHHTCCHHHHHHHHSSH T ss_pred CCHHHHHHHHHCCCHHHHHHCCCCH T ss_conf 7449999988788853687308999 No 122 >d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]} Probab=56.05 E-value=3 Score=18.87 Aligned_cols=28 Identities=4% Similarity=-0.191 Sum_probs=18.2 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 8199799999987246999999852898 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVN 52 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144) -.++|-.++|+.+|||++++.+|=.++. T Consensus 19 ~~~~s~~~Ia~~agvs~~~~y~~F~~K~ 46 (71) T d1jt6a1 19 YNATTTGEIVKLSESSKGNLYYHFKTKE 46 (71) T ss_dssp TTTCCHHHHHHHTTCCHHHHHHHHSSHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 1406799999987858759988884999 No 123 >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} Probab=56.04 E-value=1.8 Score=20.34 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=26.1 Q ss_pred HHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 89999--999999999981997999999872469999998 Q gi|254780424|r 10 PVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 10 ~~d~~--iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ..|++ +-+.+-.++...+.|-.+||..+|++++.|++. T Consensus 5 ~~~i~~lvk~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~ 44 (70) T d1sfua_ 5 DAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQ 44 (70) T ss_dssp SHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHH T ss_conf 8999999999997458777704999999959889898899 No 124 >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=56.01 E-value=5.6 Score=17.14 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHH-HHHHHHHH Q ss_conf 9999999999998199--79999998724-69999998 Q gi|254780424|r 13 INVGKRIRLRRMILGM--SQEKLGECLGI-TFQQVQKY 47 (144) Q Consensus 13 ~~iG~rIr~~R~~~gl--TQ~eLA~~lGv-s~s~is~~ 47 (144) ..|=+.|+..-...|. |.+|+|+.+|+ |.+++..+ T Consensus 8 ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~ 45 (71) T d1jhfa1 8 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH 45 (71) T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHH T ss_conf 99999999999982889889999977299999999999 No 125 >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=55.85 E-value=2.1 Score=19.82 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=11.1 Q ss_pred HHHHHHHCCCCHHHH Q ss_conf 999997549999995 Q gi|254780424|r 59 LQHISEVLESPISFF 73 (144) Q Consensus 59 L~~iA~~l~v~~~~l 73 (144) +..||+.++++...+ T Consensus 52 ~~~ia~~l~~~~~~v 66 (125) T d1p4xa2 52 LKDLIETIHHKYPQT 66 (125) T ss_dssp HHHHHHHSSSCHHHH T ss_pred HHHHHHHHCCCCCHH T ss_conf 999999978984249 No 126 >d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]} Probab=55.75 E-value=3.2 Score=18.68 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=20.6 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 98199799999987246999999852898 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVN 52 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144) --.++|-.++|+.+|||++++.+|=.++. T Consensus 18 G~~~~ti~~Ia~~agvs~~~iy~~F~sK~ 46 (69) T d2np5a1 18 GLEGASVREVAKRAGVSIGAVQHHFSTKD 46 (69) T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCSSHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 91406799999883988879988883999 No 127 >d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]} Probab=54.60 E-value=3.3 Score=18.62 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 99999999998199799999987246999999852898835899999997 Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144) Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144) -+.++=.-.--.++|-.++|+.+|||++++.+|=.++...-.+.+..+.. T Consensus 11 aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~~k~~Ll~~~~~~~~~ 60 (75) T d2id6a1 11 AAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTE 60 (75) T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999998393516799999884998889988887999999999999999 No 128 >d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]} Probab=53.95 E-value=4.1 Score=17.99 Aligned_cols=23 Identities=9% Similarity=-0.089 Sum_probs=11.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 19979999998724699999985 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E 48 (144) .+.|-.++|+..|||++++.+|= T Consensus 24 ~~~si~~Ia~~agvs~~~~y~~F 46 (71) T d1ui5a1 24 ESTTLSEIVAHAGVTKGALYFHF 46 (71) T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC T ss_pred CCCCHHHHHHHHCCCHHHHHHHC T ss_conf 62679999998794876999898 No 129 >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} Probab=53.45 E-value=3.9 Score=18.12 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=15.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 1997999999872469999998 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144) ..+|-.++|+.+|+|++++|+. T Consensus 44 ~~~~v~ela~~l~~s~s~vS~H 65 (108) T d1u2wa1 44 EELCVCDIANILGVTIANASHH 65 (108) T ss_dssp SCEEHHHHHHHHTCCHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHH T ss_conf 9914999998885572579999 No 130 >d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]} Probab=53.40 E-value=2.7 Score=19.13 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=26.1 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9999819979999998724699999985289883 Q gi|254780424|r 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144) Q Consensus 21 ~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144) .-.--.++|-.++|+++|||++++.++=.++... T Consensus 13 ~~~G~~~~s~~~Ia~~agvs~~tiy~~F~~K~~L 46 (62) T d2vkva1 13 NEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRAL 46 (62) T ss_dssp HHHHHHHCCHHHHHHHHTSCHHHHHHHSCCHHHH T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH T ss_conf 9839351789999988098888999888799999 No 131 >d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]} Probab=53.27 E-value=3.8 Score=18.17 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=24.3 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999819979999998724699999985289883 Q gi|254780424|r 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144) Q Consensus 22 ~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144) -+--.++|-.++|++.|||++++.++=.++... T Consensus 17 ~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K~~l 49 (68) T d2d6ya1 17 RHGIAGARIDRIAAEARANKQLIYAYYGNKGEL 49 (68) T ss_dssp HHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHH T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH T ss_conf 859250679999988784662898887499999 No 132 >d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]} Probab=52.69 E-value=3.7 Score=18.31 Aligned_cols=30 Identities=7% Similarity=0.010 Sum_probs=19.5 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 819979999998724699999985289883 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144) -.++|-.++|+.+|||++++.++=.++... T Consensus 24 ~~~~t~~~Ia~~agvs~~~iY~~F~~k~~L 53 (68) T d2id3a1 24 FDALDLGEIARRAGVGKTTVYRRWGTPGGL 53 (68) T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHCSHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHH T ss_conf 340779999999786887999998599999 No 133 >d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=51.69 E-value=3.5 Score=18.46 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=22.2 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 8199799999987246999999852898 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVN 52 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144) -.+.|-.++|+..|||++++.+|=.++. T Consensus 20 ~~~~ti~~Ia~~agvs~~~ly~~F~~K~ 47 (72) T d2g3ba1 20 IRGLRVNDVAEVAGVSPGLLYYHFKDRI 47 (72) T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHHCSHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 2407799999885969779998883999 No 134 >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Probab=51.59 E-value=1.7 Score=20.42 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=20.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 9999999998199799999987246999999852898835899999997549999995 Q gi|254780424|r 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) -+..+...+..|||..++.-.. .+..++.+. -+...||+.++++...+ T Consensus 18 ~~~~~~~~~~~~Lt~~q~~vL~-----~l~~~~~~~-----~t~~ela~~l~~~~~~v 65 (115) T d1hsja1 18 KKFFRDTKKKFNLNYEEIYILN-----HILRSESNE-----ISSKEIAKCSEFKPYYL 65 (115) T ss_dssp HHHHHHHSSSCCCCHHHHHHHH-----HHHTCSCSE-----EEHHHHHHSSCCCHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHH-----HHHCCCCCC-----CCHHHHHHHHCCCHHHH T ss_conf 9999998745599999999999-----998068999-----48999999978885359 No 135 >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Probab=51.26 E-value=6.6 Score=16.65 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=19.5 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 981997999999872469999998 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ..-..+..++|+.+|||+++++.. T Consensus 18 ~~~~v~~~~iA~~L~vs~~SVs~m 41 (61) T d2ev0a1 18 EKGYARVSDIAEALAVHPSSVTKM 41 (61) T ss_dssp HHSSCCHHHHHHHHTCCHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCCHHHHHH T ss_conf 589750999999958995159999 No 136 >d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]} Probab=50.83 E-value=1.7 Score=20.47 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=19.6 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 8199799999987246999999852898 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVN 52 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144) -.++|-.++|+++|||++++.++=.++. T Consensus 22 ~~~~si~~ia~~~gvs~~~~y~hF~~K~ 49 (68) T d2g7la1 22 LEKVTMRRLAQELDTGPASLYVYVANTA 49 (68) T ss_dssp SSSCCHHHHHHHTTSCHHHHTTTCCSHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 0307899999997828767628775999 No 137 >d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=50.61 E-value=6 Score=16.94 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=21.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9999819979999998724699999985289883 Q gi|254780424|r 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144) Q Consensus 21 ~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144) -+...-++|-.++|+.+|||++++..+=.++... T Consensus 13 l~~~~G~~ti~~Ia~~agvs~~~iY~~F~~K~~L 46 (65) T d2g7ga1 13 LVDRDGDFRMPDLARHLNVQVSSIYHHAKGRAAV 46 (65) T ss_dssp HHHHHSSCCHHHHHHHTTSCHHHHHTTSCHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCCCCHHHCCCCHHHH T ss_conf 9978679789999988570613131158999999 No 138 >d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]} Probab=50.26 E-value=4.6 Score=17.68 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=12.1 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9981997999999872469999998 Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) +--.++|-.++|+++|||++++.+| T Consensus 19 ~G~~~~t~~~Ia~~agvs~~slY~y 43 (72) T d1zk8a1 19 NGVQEVTLASLAQTLGVRSPSLYNH 43 (72) T ss_dssp HCGGGCCHHHHHHHHTSCHHHHTTT T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 6977566999999959799999898 No 139 >d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]} Probab=50.17 E-value=2.5 Score=19.41 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=22.4 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 9819979999998724699999985289883589999 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~ 60 (144) --.++|-.++|+.+|||++++.+|=.++...-...+. T Consensus 22 G~~~~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~ 58 (75) T d2hyja1 22 GLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLD 58 (75) T ss_dssp CGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH T ss_conf 9030769999998890989998888299999999999 No 140 >d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]} Probab=50.16 E-value=3.9 Score=18.15 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=23.4 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 8199799999987246999999852898835899 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~ 58 (144) -.++|-.++|+..|||++++.+|=.++...=... T Consensus 22 ~~~~ti~~Ia~~agvs~~t~y~~F~~K~~l~~~~ 55 (72) T d1pb6a1 22 FHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAV 55 (72) T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH T ss_conf 2506799999986978679998886999999999 No 141 >d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]} Probab=49.78 E-value=3.7 Score=18.26 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=23.4 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 81997999999872469999998528988358999 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144) -.++|-.++|+..|||++++.++=.++...-...+ T Consensus 19 ~~~~ti~~Ia~~agvs~~~~y~~F~~K~~L~~~~~ 53 (72) T d1vi0a1 19 YHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLF 53 (72) T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH T ss_conf 04155999999879498799888839999999999 No 142 >d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]} Probab=49.51 E-value=5.7 Score=17.10 Aligned_cols=29 Identities=7% Similarity=-0.048 Sum_probs=16.3 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999998199799999987246999999 Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144) Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144) .|+..=..-+..+.+.|+.+|++++|+.+ T Consensus 55 lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~ 83 (91) T d1ntca_ 55 LLTTALRHTQGHKQEAARLLGWGAATLTA 83 (91) T ss_dssp HHHHHHHHTTTCTTHHHHHTTCCHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHH T ss_conf 99999999599599999997988999999 No 143 >d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Probab=49.27 E-value=7.1 Score=16.46 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=23.1 Q ss_pred HHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999998199--799999987246999999852 Q gi|254780424|r 15 VGKRIRLRRMILGM--SQEKLGECLGITFQQVQKYEK 49 (144) Q Consensus 15 iG~rIr~~R~~~gl--TQ~eLA~~lGvs~s~is~~E~ 49 (144) |-+-++.++.++|= |-+|+|+.+|++...|.+|.. T Consensus 12 i~~a~~~L~~~lGR~Pt~~EiA~~lg~s~~e~~~~l~ 48 (77) T d1rp3a1 12 IKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLD 48 (77) T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999999988697999999997949999999999 No 144 >d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]} Probab=49.26 E-value=4.5 Score=17.77 Aligned_cols=26 Identities=8% Similarity=-0.028 Sum_probs=15.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 19979999998724699999985289 Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGV 51 (144) Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144) .++|-.++|+.+|||++++.+|=.++ T Consensus 19 ~~~si~~Ia~~agvs~~t~Y~~F~sK 44 (70) T d2gena1 19 DATTIEMIRDRSGASIGSLYHHFGNK 44 (70) T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTCSH T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCH T ss_conf 40879999998795877999898799 No 145 >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} Probab=47.99 E-value=5.4 Score=17.24 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=20.3 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 81997999999872469999998 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ...+|-.|+|+.+|+|++++++. T Consensus 30 ~~~~s~~ela~~lg~s~~~v~~h 52 (190) T d1ulya_ 30 NKEMTISQLSEILGKTPQTIYHH 52 (190) T ss_dssp TCCBCHHHHHHHHTCCHHHHHHH T ss_pred HCCCCHHHHHHHHCCCHHHHHHH T ss_conf 19987999999989199999999 No 146 >d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]} Probab=47.89 E-value=2.9 Score=18.96 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=9.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 997999999872469999998 Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144) ++|-.++|+.+|||++++.++ T Consensus 29 ~~t~~~Ia~~agvs~~~~Y~~ 49 (79) T d2oi8a1 29 ALSLNAIAKRMGMSGPALYRY 49 (79) T ss_dssp SCCHHHHHHHTTCCHHHHHTT T ss_pred CCCHHHHHHHHCCCCCCHHHH T ss_conf 067999999867997744551 No 147 >d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=46.71 E-value=2.5 Score=19.34 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=18.4 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 81997999999872469999998 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ...+|.++||+.+|+|++++++. T Consensus 17 ~~~itl~~lA~~~~~S~~~l~r~ 39 (54) T d1d5ya1 17 DQPLSLDNVAAKAGYSKWHLQRM 39 (54) T ss_dssp SSSCCCHHHHTTTSSCHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHH T ss_conf 89999999999989299999999 No 148 >d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]} Probab=46.33 E-value=7.9 Score=16.17 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=27.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHCCCCHHHHH Q ss_conf 999999872469999998528---988358999999975499999950 Q gi|254780424|r 30 QEKLGECLGITFQQVQKYEKG---VNRVGASRLQHISEVLESPISFFF 74 (144) Q Consensus 30 Q~eLA~~lGvs~s~is~~E~G---~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144) =+.||.++|++...|..+|.. ...|+...|..-+.--+-++..|+ T Consensus 28 Wr~LA~~Lg~~~~~I~~i~~~~~~~~Spt~~lL~~W~~~~~~Tv~~L~ 75 (102) T d1d2za_ 28 WQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLF 75 (102) T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHH T ss_conf 999999949999999999863467997499999999836898199999 No 149 >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Probab=46.19 E-value=7.9 Score=16.15 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=18.1 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 81997999999872469999998 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ....+..++|+.+|||+++++.. T Consensus 21 ~~~v~~~~iA~~L~vs~~SVt~m 43 (63) T d2isya1 21 GVTPLRARIAERLDQSGPTVSQT 43 (63) T ss_dssp TCCCCHHHHHHHHTCCHHHHHHH T ss_pred CCCCCHHHHHHHHCCCCHHHHHH T ss_conf 89770999999968994439999 No 150 >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} Probab=45.88 E-value=1 Score=21.79 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=9.1 Q ss_pred HHHHHHHCCCCHHHH Q ss_conf 999997549999995 Q gi|254780424|r 59 LQHISEVLESPISFF 73 (144) Q Consensus 59 L~~iA~~l~v~~~~l 73 (144) ...||+.++++...+ T Consensus 82 ~~eLa~~l~i~~~tv 96 (172) T d2fbka1 82 PTELSALAAISGPST 96 (172) T ss_dssp HHHHHHHCSCCSGGG T ss_pred HHHHHHHHCCCHHHH T ss_conf 999999978678579 No 151 >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=45.23 E-value=5.6 Score=17.12 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHHH Q ss_conf 9999999999819--9-799999987246999999 Q gi|254780424|r 15 VGKRIRLRRMILG--M-SQEKLGECLGITFQQVQK 46 (144) Q Consensus 15 iG~rIr~~R~~~g--l-TQ~eLA~~lGvs~s~is~ 46 (144) |-+.|..-+..-| | |+.+||+.+|||+.++.+ T Consensus 12 i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~ 46 (74) T d1hw1a1 12 IIESIWNNRFPPGTILPAERELSELIGVTRTTLRE 46 (74) T ss_dssp HHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 99999849999949983499999998979899999 No 152 >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} Probab=44.32 E-value=7.8 Score=16.22 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=18.9 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 81997999999872469999998 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ...+|-.++|+.+|+|++++|+. T Consensus 34 ~~~~~v~ela~~l~is~stvS~H 56 (98) T d1r1ta_ 34 RSELCVGDLAQAIGVSESAVSHQ 56 (98) T ss_dssp TCCBCHHHHHHHHTCCHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHH T ss_conf 19967999999989298899999 No 153 >d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Probab=41.84 E-value=9.3 Score=15.73 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=23.0 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999981997999999872469999998 Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) .=-+.|+..=...| +..+.|+.+||+++++.+- T Consensus 21 ~Er~~I~~aL~~~g-n~~~aA~~Lgisr~tL~rK 53 (61) T d1g2ha_ 21 YEAQVLKLFYAEYP-STRKLAQRLGVSHTAIANK 53 (61) T ss_dssp HHHHHHHHHHHHSC-SHHHHHHHTTSCTHHHHHH T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHH T ss_conf 99999999999878-9999999979889999999 No 154 >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} Probab=41.79 E-value=6.6 Score=16.66 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHH--CCC-CHHHHHHHHHHHHHHHHH Q ss_conf 999999999998--199-799999987246999999 Q gi|254780424|r 14 NVGKRIRLRRMI--LGM-SQEKLGECLGITFQQVQK 46 (144) Q Consensus 14 ~iG~rIr~~R~~--~gl-TQ~eLA~~lGvs~s~is~ 46 (144) +|-..|..-+.. -.| |..+||+..|||++++.+ T Consensus 6 ~i~~~I~~g~l~~G~~LPse~~La~~~~vSr~tvr~ 41 (78) T d3bwga1 6 EIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITK 41 (78) T ss_dssp HHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999999849999939993799999998879899999 No 155 >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Probab=41.62 E-value=6.6 Score=16.67 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=15.0 Q ss_pred CCCHHHHHHHHHHCCCCHHHH Q ss_conf 835899999997549999995 Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144) Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144) -|+.+....||..+|++...+ T Consensus 28 YPs~~~k~~La~~~gl~~~qv 48 (73) T d1pufb_ 28 YPSEEAKEELAKKCGITVSQV 48 (73) T ss_dssp CCCHHHHHHHHHHHTSCHHHH T ss_pred CCCHHHHHHHHHHHCCCHHHH T ss_conf 999999999999979399996 No 156 >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} Probab=41.35 E-value=9 Score=15.80 Aligned_cols=28 Identities=18% Similarity=0.008 Sum_probs=22.0 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999819979999998724699999985 Q gi|254780424|r 20 RLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144) Q Consensus 20 r~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144) ..++ ..-+|-.+||+.+|+|.+++++.- T Consensus 22 ~~L~-~~~~~~~ela~~l~~s~~~v~~HL 49 (194) T d2p4wa1 22 FLLT-KRPYFVSELSRELGVGQKAVLEHL 49 (194) T ss_dssp HHHH-HSCEEHHHHHHHHTCCHHHHHHHH T ss_pred HHHH-HCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9998-089879999999890998999999 No 157 >d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]} Probab=40.66 E-value=3.5 Score=18.43 Aligned_cols=24 Identities=4% Similarity=-0.022 Sum_probs=14.0 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 981997999999872469999998 Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~ 47 (144) --.+.|-.++|+..|||++++.++ T Consensus 19 G~~~~si~~Ia~~agvs~~~iy~~ 42 (73) T d1sgma1 19 GYHATGLNQIVKESGAPKGSLYHF 42 (73) T ss_dssp CTTTCCHHHHHHHHCCCSCHHHHS T ss_pred CCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 924177999999868887799998 No 158 >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=40.20 E-value=6.5 Score=16.72 Aligned_cols=23 Identities=0% Similarity=-0.068 Sum_probs=16.4 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+....||..+|++...+ T Consensus 19 ~~~P~~~~~~~LA~~lgl~~~qV 41 (53) T d1le8a_ 19 KQSLNSKEKEEVAKKCGITPLQV 41 (53) T ss_dssp CSCCCHHHHHHHHHHTTSCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHH T ss_conf 89989999999999978998888 No 159 >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Probab=39.11 E-value=6.8 Score=16.58 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=16.0 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+....||..+|++...+ T Consensus 22 ~~yP~~~~r~~LA~~l~l~~~~V 44 (58) T d1ig7a_ 22 KQYLSIAERAEFSSSLSLTETQV 44 (58) T ss_dssp CSCCCHHHHHHHHHHTTCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHE T ss_conf 78888999999999929994061 No 160 >d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Probab=39.01 E-value=7.6 Score=16.29 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=12.1 Q ss_pred CCCHHHHHHHHHHCCCCHHHH Q ss_conf 835899999997549999995 Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144) Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144) .|+.+....||..+|++...+ T Consensus 29 yPs~~e~~~La~~~~l~~~qI 49 (62) T d1x2na1 29 YPTEDEKKQIAAQTNLTLLQV 49 (62) T ss_dssp CCCHHHHHHHHHHHTCCHHHH T ss_pred CCCHHHHHHHHHHHCCCHHHH T ss_conf 969999999999989099993 No 161 >d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Probab=38.03 E-value=4.5 Score=17.73 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=18.5 Q ss_pred CHHHHHHHHHHCCCCHHHHHCCC Q ss_conf 58999999975499999950677 Q gi|254780424|r 55 GASRLQHISEVLESPISFFFDVS 77 (144) Q Consensus 55 s~~~L~~iA~~l~v~~~~l~~~~ 77 (144) +.++|+.||+.++++++.|.... T Consensus 9 ~GDTl~~IA~~y~vs~~~i~~~N 31 (48) T d1e0ga_ 9 KGDSLSSIAKRHGVNIKDVMRWN 31 (48) T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC T ss_pred CCCCHHHHHHHHCCCHHHHHHHC T ss_conf 99999999999798899999875 No 162 >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=37.89 E-value=8.8 Score=15.86 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=15.3 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+......||..+|++..-+ T Consensus 21 ~~yp~~~~r~~LA~~lgl~~~qV 43 (57) T d1jgga_ 21 ENYVSRPRRCELAAQLNLPESTI 43 (57) T ss_dssp CSCCCHHHHHHHHHHHTSCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHH T ss_conf 79999999999999959986680 No 163 >d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]} Probab=37.08 E-value=9.3 Score=15.72 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=13.3 Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHHH Q ss_conf 8528988358999999975499999950 Q gi|254780424|r 47 YEKGVNRVGASRLQHISEVLESPISFFF 74 (144) Q Consensus 47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144) .|+|-. .+ +..||+..||+..-|+ T Consensus 26 ~~~G~~-~t---~~~Ia~~agvs~~~~Y 49 (88) T d1t33a1 26 GEYGLH-AT---TRDIAALAGQNIAAIT 49 (88) T ss_dssp HHHGGG-SC---HHHHHHHHTSCHHHHH T ss_pred HHHCCC-CC---HHHHHHHHCCCHHHHH T ss_conf 875401-67---9999988399844310 No 164 >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=36.25 E-value=2.4 Score=19.52 Aligned_cols=46 Identities=11% Similarity=-0.016 Sum_probs=21.2 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 99999998199799999987246999999852898835899999997549999995 Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ..+.+....|||..++.-..- + +++.....+ +..||+.++++...+ T Consensus 22 ~~~~~~~~~~Lt~~q~~iL~~-----l--~~~~~~~~t---~~eia~~~~~~~~~v 67 (125) T d1p4xa1 22 FKKKVKPEVDMTIKEFILLTY-----L--FHQQENTLP---FKKIVSDLCYKQSDL 67 (125) T ss_dssp HHHHHTTTCSSCHHHHHHHHH-----H--HSCSCSEEE---HHHHHHHSSSCGGGT T ss_pred HHHHHHHHCCCCHHHHHHHHH-----H--HHHCCCCCC---HHHHHHHHCCCCCHH T ss_conf 999999874998899999999-----9--984369867---999999968882439 No 165 >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Probab=35.97 E-value=9 Score=15.80 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=15.5 Q ss_pred CCCCCHHHHHHHHHHCCCCHHH Q ss_conf 9883589999999754999999 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISF 72 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~ 72 (144) ...|+.+....||..||++..- T Consensus 21 ~~yp~~~~r~~LA~~lgL~~~q 42 (53) T d1p7ia_ 21 NRYLTERRRQQLSSELGLNEAQ 42 (53) T ss_dssp CSSCCHHHHHHHHHHHTCCHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHH T ss_conf 7889889999999995978688 No 166 >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=35.79 E-value=8.2 Score=16.06 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=13.6 Q ss_pred CCHHHHHHHHHHHHHHHHH Q ss_conf 9799999987246999999 Q gi|254780424|r 28 MSQEKLGECLGITFQQVQK 46 (144) Q Consensus 28 lTQ~eLA~~lGvs~s~is~ 46 (144) |+..+||+..|||+.++.. T Consensus 26 l~~~~La~~~~vSr~tvr~ 44 (69) T d2hs5a1 26 LSEPDICAALDVSRNTVRE 44 (69) T ss_dssp ECHHHHHHHHTCCHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHH T ss_conf 6999999998979899999 No 167 >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=35.45 E-value=10 Score=15.46 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=15.5 Q ss_pred CCCCCHHHHHHHHHHCCCCHHH Q ss_conf 9883589999999754999999 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISF 72 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~ 72 (144) ...|+......||..||++..- T Consensus 23 ~~yp~~~~r~~LA~~l~l~~~~ 44 (67) T d1zq3p1 23 GRYLTAPRLADLSAKLALGTAQ 44 (67) T ss_dssp CSSCCHHHHHHHHHHHTSCHHH T ss_pred CCCCCHHHHHHHHHHHCCCCCC T ss_conf 7787789999999870998133 No 168 >d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]} Probab=34.82 E-value=12 Score=15.03 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=24.0 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC Q ss_conf 999999998199-7999999872469999998528988358999999975499 Q gi|254780424|r 17 KRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 (144) Q Consensus 17 ~rIr~~R~~~gl-TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v 68 (144) ..|+++=....+ ||+||.+.+. +.|.. .+-.++.+--+-||+ T Consensus 5 ~~I~~li~~~~i~tQ~eL~~~L~---------~~Gi~-vTQaTlSRDL~eLg~ 47 (75) T d1b4aa1 5 IKIREIIMSNDIETQDELVDRLR---------EAGFN-VTQATVSRDIKEMQL 47 (75) T ss_dssp HHHHHHHHHSCCCSHHHHHHHHH---------HTTCC-CCHHHHHHHHHHTTC T ss_pred HHHHHHHHHCCCCCHHHHHHHHH---------HCCCC-EEHHHHHHHHHHHCC T ss_conf 99999998689778999999999---------85986-308999979999298 No 169 >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Probab=34.39 E-value=11 Score=15.32 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=17.9 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+....||..+|++...+ T Consensus 20 ~~~P~~~~~~~LA~~lgL~~~qV 42 (57) T d1e3oc1 20 NQKPTSEDITLIAEQLNMEKEVI 42 (57) T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHH T ss_conf 57899999999999978799999 No 170 >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=34.32 E-value=9.3 Score=15.71 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=16.9 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+....||..+|++..-+ T Consensus 24 ~~yPs~~~r~~LA~~l~L~~~~V 46 (68) T d1ftta_ 24 QKYLSAPEREHLASMIHLTPTQV 46 (68) T ss_dssp SSSCCHHHHHHHHHHHTSCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCCCCE T ss_conf 77777899999999849992524 No 171 >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=34.22 E-value=10 Score=15.47 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=17.9 Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 852898835899999997549999995 Q gi|254780424|r 47 YEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) |+.+. .|+.+....||..+|++...+ T Consensus 22 F~~n~-~Ps~~~~~~LA~~l~l~~~~V 47 (66) T d1bw5a_ 22 YAANP-RPDALMKEQLVEMTGLSPRVI 47 (66) T ss_dssp HHHCS-CCCHHHHHHHHHHHTSCHHHH T ss_pred HHHCC-CCCHHHHHHHHHHCCCCHHHH T ss_conf 99878-999999999999909397882 No 172 >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=34.14 E-value=10 Score=15.50 Aligned_cols=23 Identities=0% Similarity=-0.119 Sum_probs=16.7 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+......||..||++...+ T Consensus 24 n~yPs~~~r~~LA~~lgl~~~~V 46 (65) T d1fjla_ 24 TQYPDIYTREELAQRTNLTEARI 46 (65) T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHH T ss_conf 69998389999999959987895 No 173 >d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=33.87 E-value=10 Score=15.45 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=14.8 Q ss_pred CCCCCHHHHHHHHHHCCCCHHH Q ss_conf 9883589999999754999999 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISF 72 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~ 72 (144) ...|+......||..+|++... T Consensus 31 ~~yP~~~~r~~LA~~l~l~~~q 52 (77) T d1vnda_ 31 QRYLSAPEREHLASLIRLTPTQ 52 (77) T ss_dssp CSCCCHHHHHHHHHHHTCCHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHH T ss_conf 7889999999999970997566 No 174 >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Probab=33.80 E-value=7.6 Score=16.28 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=18.3 Q ss_pred CCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 898835899999997549999995 Q gi|254780424|r 50 GVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 50 G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ....|+.+....||..+|++...+ T Consensus 29 ~~~~P~~~~~~~La~~lgl~~~qV 52 (71) T d1wi3a_ 29 VGLYPDQEAIHTLSAQLDLPKHTI 52 (71) T ss_dssp HCSCCCHHHHHHHHHHSCCCHHHH T ss_pred HCCCCCHHHHHHHHHHHCCCHHHH T ss_conf 067798999999987827999999 No 175 >d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]} Probab=33.47 E-value=4.4 Score=17.80 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=23.0 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99819979999998724699999985289883 Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144) Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144) +--.+.|-.++|+..|||++++.+|=.++... T Consensus 12 ~G~~~~s~~~IA~~agvs~~~ly~~F~sK~~L 43 (65) T d2np3a1 12 RGFDATSLRRIAETAGVDQSLVHHFYGTKENL 43 (65) T ss_dssp -------------------------CCC-CHH T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHH T ss_conf 79040779999998786887999888799999 No 176 >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Probab=33.43 E-value=9 Score=15.80 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=17.2 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+....||..+|++...+ T Consensus 23 ~~yp~~~~r~~LA~~l~l~~~qV 45 (58) T d2craa1 23 NKFITKDKRRKISAATSLSERQI 45 (58) T ss_dssp CSSCCHHHHHHHHHHTCCCHHHH T ss_pred CCCCCHHHHHHHHHHCCCCHHHE T ss_conf 69999899999999829997781 No 177 >d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]} Probab=33.21 E-value=3.4 Score=18.48 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=11.8 Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHHH Q ss_conf 8528988358999999975499999950 Q gi|254780424|r 47 YEKGVNRVGASRLQHISEVLESPISFFF 74 (144) Q Consensus 47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144) .|.|-...|+. .||+..||+..-|+ T Consensus 21 ~~~G~~~~si~---~Ia~~agvs~~t~Y 45 (76) T d2fd5a1 21 LERGAVEPSVG---EVMGAAGLTVGGFY 45 (76) T ss_dssp HHHTTTSCCHH---HHHHHTTCCGGGGG T ss_pred HHHCCCCCCHH---HHHHHHCCCCCCHH T ss_conf 98491305699---99998389955004 No 178 >d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Probab=33.05 E-value=13 Score=14.85 Aligned_cols=11 Identities=27% Similarity=0.184 Sum_probs=4.2 Q ss_pred HHHHHHCCCCH Q ss_conf 99999819979 Q gi|254780424|r 20 RLRRMILGMSQ 30 (144) Q Consensus 20 r~~R~~~glTQ 30 (144) .++=..+||+- T Consensus 8 ~R~~~~L~L~~ 18 (95) T d1aisb2 8 NKFADELGLSE 18 (95) T ss_dssp HHHHHHHTCCH T ss_pred HHHHHHCCCCH T ss_conf 99998869699 No 179 >d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]} Probab=32.85 E-value=3.5 Score=18.47 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=17.0 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 819979999998724699999985289 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGV 51 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144) -.++|-.++|+++|||++++.+|=.++ T Consensus 24 ~~~~sv~~Ia~~agvs~~t~Y~~F~~k 50 (71) T d2iu5a1 24 YHQISVSDIMQTAKIRRQTFYNYFQNQ 50 (71) T ss_dssp GGGCCHHHHHHHHTSCGGGGGGTCSSH T ss_pred CCCCCHHHHHHHHCCCCCHHHHHCCCH T ss_conf 640779999987571645897776799 No 180 >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=32.70 E-value=11 Score=15.25 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=17.8 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+....||..+|++...+ T Consensus 21 ~~~P~~~~~~~La~~l~l~~~~V 43 (58) T d1au7a1 21 HSKPSSQEIMRMAEELNLEKEVV 43 (58) T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHH T ss_conf 36999999999999968999999 No 181 >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Probab=32.31 E-value=9.4 Score=15.68 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=17.8 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+......||..+|++...+ T Consensus 23 n~yP~~~~r~~LA~~l~L~~~~V 45 (68) T d2cuea1 23 THYPDVFARERLAAKIDLPEARI 45 (68) T ss_dssp CSSCCHHHHHHHHHHTTCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHE T ss_conf 68998789999999939693354 No 182 >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} Probab=32.22 E-value=13 Score=14.76 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.7 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 81997999999872469999998 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144) ...++-.++|+.+|+|++++|+- T Consensus 29 ~~~~~v~el~~~l~~s~~~vS~H 51 (94) T d1r1ua_ 29 VSEASVGHISHQLNLSQSNVSHQ 51 (94) T ss_dssp HCCBCHHHHHHHHTCCHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHH T ss_conf 29956999999988787789999 No 183 >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Probab=31.99 E-value=11 Score=15.19 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=17.2 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+....||..||++.... T Consensus 22 n~yp~~~~r~~LA~~l~L~~~qV 44 (57) T d2e1oa1 22 QKYLSPPERKRLAKMLQLSERQV 44 (57) T ss_dssp CSSCCHHHHHHHHHHTTCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHH T ss_conf 79999999999999958987783 No 184 >d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=31.61 E-value=11 Score=15.22 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=16.0 Q ss_pred CCCHHHHHHHHHHCCCCHHHH Q ss_conf 835899999997549999995 Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144) Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144) -|+.+....||..+|+++..+ T Consensus 25 yPs~~e~~~La~~~gL~~~qV 45 (60) T d1k61a_ 25 YLDTKGLENLMKNTSLSRIQI 45 (60) T ss_dssp CCCHHHHHHHHHHHCCCHHHH T ss_pred CCCHHHHHHHHHHHCCCHHHH T ss_conf 949999999999988099997 No 185 >d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Probab=31.50 E-value=12 Score=15.05 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=16.0 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+......||..||++...+ T Consensus 19 ~~yp~~~~r~~LA~~l~l~~~~V 41 (56) T d9anta_ 19 NRYLTRRRRIEIAHALSLTERQI 41 (56) T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHE T ss_conf 79999999999999939986670 No 186 >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Probab=30.18 E-value=14 Score=14.60 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.3 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+....||..+|+++..+ T Consensus 30 n~~P~~~~r~~La~~~~l~~~~V 52 (67) T d1ocpa_ 30 CPKPSLQQITHIANQLGLEKDVV 52 (67) T ss_dssp CSCCCHHHHHHHHHHHTCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHH T ss_conf 25799999999999984788999 No 187 >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Probab=29.96 E-value=11 Score=15.20 Aligned_cols=26 Identities=4% Similarity=0.031 Sum_probs=19.6 Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 852898835899999997549999995 Q gi|254780424|r 47 YEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) |+.+ ..|+.+....||..+|++...+ T Consensus 23 F~~~-~~P~~~~r~~LA~~l~l~~~~V 48 (76) T d2ecba1 23 FLNS-SVLTDEELNRLRAQTKLTRREI 48 (76) T ss_dssp HHHC-SSCCHHHHHHHHHHTCCCHHHH T ss_pred HHHC-CCCCHHHHHHHHHHHCCCHHHH T ss_conf 9987-7888999999999968989999 No 188 >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Probab=29.91 E-value=13 Score=14.77 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=24.1 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 8199799999987246999999852898835899999997549999995 Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ..-+|-.++...- ..++.+. .|+.+....||..||++...+ T Consensus 31 Rt~ft~~Ql~~Le-------~~F~~n~-yPs~~~r~~LA~~l~l~~~~V 71 (88) T d1b72a_ 31 RTNFTTRQLTELE-------KEFHFNK-YLSRARRVEIAATLELNETQV 71 (88) T ss_dssp CCCCCHHHHHHHH-------HHHTTCS-SCCHHHHHHHHHHHTCCHHHH T ss_pred CCCCCHHHHHHHH-------HHHHHCC-CCCHHHHHHHHHHCCCCHHHE T ss_conf 8688999999999-------9999678-875278999999829997784 No 189 >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=29.83 E-value=9.5 Score=15.64 Aligned_cols=20 Identities=10% Similarity=-0.087 Sum_probs=10.2 Q ss_pred CCCCHHHHHHHHHHCCCCHH Q ss_conf 88358999999975499999 Q gi|254780424|r 52 NRVGASRLQHISEVLESPIS 71 (144) Q Consensus 52 ~~ps~~~L~~iA~~l~v~~~ 71 (144) ..|+......||..+|++.. T Consensus 24 ~yP~~~~r~~LA~~l~l~~~ 43 (60) T d1yz8p1 24 RYPDMSTREEIAVWTNLTEA 43 (60) T ss_dssp SSCCTTTTTHHHHHTTSCHH T ss_pred CCCCHHHHHHHHHHHCCCHH T ss_conf 99986799999998779857 No 190 >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Probab=29.58 E-value=13 Score=14.71 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=20.8 Q ss_pred HHHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 9852898835899999997549999995 Q gi|254780424|r 46 KYEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 46 ~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) .++.....|+......||..+|++...+ T Consensus 19 ~F~~~n~yP~~~~r~~LA~~lgL~~~~V 46 (72) T d1uhsa_ 19 NFNKVNKHPDPTTLCLIAAEAGLTEEQT 46 (72) T ss_dssp HHHSSCSSCCHHHHHHHHHHHTCCHHHH T ss_pred HHHHCCCCCCHHHHHHHHHHHCCCHHHH T ss_conf 9987423389999999999939978999 No 191 >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=28.97 E-value=14 Score=14.64 Aligned_cols=23 Identities=0% Similarity=0.039 Sum_probs=14.5 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+.+..||+-+|++...+ T Consensus 43 ~~~p~~~~~~~la~~~gl~~~~i 65 (80) T d1wh7a_ 43 IQKHDDVAVEQFCAETGVRRQVL 65 (80) T ss_dssp CCSSTTHHHHHHHHHSCCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHE T ss_conf 56969999999999978898895 No 192 >d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]} Probab=28.89 E-value=4.2 Score=17.94 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=31.5 Q ss_pred CHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCC Q ss_conf 989999999999999981997-9999998724699999985289 Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMS-QEKLGECLGITFQQVQKYEKGV 51 (144) Q Consensus 9 ~~~d~~iG~rIr~~R~~~glT-Q~eLA~~lGvs~s~is~~E~G~ 51 (144) |..|+-+.+.+-.+-...+.+ =..||.++|+|...|..++... T Consensus 7 ~~~d~dl~~~f~~ia~~l~~~dwk~lar~LGls~~~I~~I~~~~ 50 (127) T d1ddfa_ 7 NLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDN 50 (127) T ss_dssp CCTTCCTTSHHHHHHHHSCHHHHHHHHHTTTSCHHHHHHHHHTT T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 97603699999999987798899999999499999999999878 No 193 >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Probab=28.03 E-value=6.5 Score=16.69 Aligned_cols=22 Identities=23% Similarity=0.086 Sum_probs=16.1 Q ss_pred CCCCCHHHHHHHHHHCCCCHHH Q ss_conf 9883589999999754999999 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISF 72 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~ 72 (144) ...|+.+....||..+|++... T Consensus 20 n~~P~~~~~~~LA~~l~l~~~~ 41 (50) T d1s7ea1 20 NKRPSKELQITISQQLGLELST 41 (50) T ss_dssp SCSSTHHHHHHHHTTSCSSSHH T ss_pred CCCCCHHHHHHHHHHHCCCHHH T ss_conf 7999999999999997909889 No 194 >d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]} Probab=27.99 E-value=8.1 Score=16.11 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=8.1 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 79999998724699999 Q gi|254780424|r 29 SQEKLGECLGITFQQVQ 45 (144) Q Consensus 29 TQ~eLA~~lGvs~s~is 45 (144) |..+||+.+|||+.++. T Consensus 35 s~r~La~~~~vSr~tvr 51 (100) T d1v4ra1 35 SVADIRAQFGVAAKTVS 51 (100) T ss_dssp CHHHHHHHSSSCTTHHH T ss_pred CHHHHHHHHCCCHHHHH T ss_conf 69999999887989999 No 195 >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Probab=27.64 E-value=14 Score=14.57 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.9 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+.+.+..||..+|++...+ T Consensus 25 n~~Ps~~~~~~La~~~gL~~~qV 47 (76) T d2ecca1 25 CQWARREDYQKLEQITGLPRPEI 47 (76) T ss_dssp CSSCCHHHHHHHHHHTCCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHH T ss_conf 67899999999999980579999 No 196 >d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Probab=27.61 E-value=16 Score=14.26 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=13.0 Q ss_pred CCCHHHHHHHHHHCCCCHHHHH Q ss_conf 8358999999975499999950 Q gi|254780424|r 53 RVGASRLQHISEVLESPISFFF 74 (144) Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l~ 74 (144) -.+.++|..||+.+|+|++.|- T Consensus 81 ~~ka~TleeLA~~~gid~~~L~ 102 (146) T d1d4ca3 81 VKEGKTIEELAKQIDVPAAELA 102 (146) T ss_dssp CEEESSHHHHHHHHTCCHHHHH T ss_pred EEECCCHHHHHHHHCCCHHHHH T ss_conf 5574889999998698978999 No 197 >d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Probab=26.63 E-value=16 Score=14.18 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=14.6 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 98835899999997549999995 Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144) ...|+......||..+|++...+ T Consensus 35 ~~yPs~~~r~~LA~~l~l~~~qV 57 (77) T d1pufa_ 35 NMYLTRDRRYEVARLLNLTERQV 57 (77) T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH T ss_pred CCCCCHHHHHHHHHHHCCCHHHH T ss_conf 79999999999999809887780 No 198 >d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]} Probab=23.53 E-value=19 Score=13.78 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=20.9 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHH-----HHHHHHHHH Q ss_conf 999999998199-7999999872-----469999998 Q gi|254780424|r 17 KRIRLRRMILGM-SQEKLGECLG-----ITFQQVQKY 47 (144) Q Consensus 17 ~rIr~~R~~~gl-TQ~eLA~~lG-----vs~s~is~~ 47 (144) ..|+.+=....+ ||+||.+.+. ||.+|+|+. T Consensus 7 ~~I~~li~~~~i~tQ~eL~~~L~~~G~~vTQaTlSRD 43 (63) T d2p5ka1 7 IKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRD 43 (63) T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHH T ss_conf 9999999848978899999999986987528998878 No 199 >d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Probab=23.25 E-value=4.7 Score=17.62 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=19.1 Q ss_pred CHHHHHHHHHHCCCCHHHHHCCCC Q ss_conf 589999999754999999506774 Q gi|254780424|r 55 GASRLQHISEVLESPISFFFDVSP 78 (144) Q Consensus 55 s~~~L~~iA~~l~v~~~~l~~~~~ 78 (144) +-++|+.||+.++++++.+....+ T Consensus 8 ~GDTL~~IA~~y~v~~~~i~~~N~ 31 (48) T d1y7ma2 8 QGDTLNSIAADFRISTAALLQANP 31 (48) T ss_dssp TTCCHHHHHHHTTSCCCCCCCTSC T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 998999999876989999998729 No 200 >d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Probab=22.32 E-value=20 Score=13.63 Aligned_cols=22 Identities=9% Similarity=-0.068 Sum_probs=14.5 Q ss_pred CCCCHHHHHHHHHHCCCCHHHH Q ss_conf 8835899999997549999995 Q gi|254780424|r 52 NRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 52 ~~ps~~~L~~iA~~l~v~~~~l 73 (144) .-...++|..||+.+|+|++.| T Consensus 79 ~~~~adtleeLA~~~gid~~~L 100 (143) T d1y0pa3 79 VAPTADSLVKLGKMEGIDGKAL 100 (143) T ss_dssp CCCEESSHHHHHHHHTSCHHHH T ss_pred CEEECCCHHHHHHHHCCCHHHH T ss_conf 3223583999999859897898 No 201 >d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Probab=22.19 E-value=20 Score=13.62 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=4.8 Q ss_pred HHHHHHHHCCCCH Q ss_conf 9999999819979 Q gi|254780424|r 18 RIRLRRMILGMSQ 30 (144) Q Consensus 18 rIr~~R~~~glTQ 30 (144) .|..+=..+||+. T Consensus 8 ~I~~~~~~L~L~~ 20 (95) T d1vola1 8 EITTMADRINLPR 20 (95) T ss_dssp HHHHHHHHTTCCH T ss_pred HHHHHHHHCCCCH T ss_conf 9999998859699 No 202 >d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} Probab=22.14 E-value=20 Score=13.61 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=25.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH Q ss_conf 799999987246999999852898835899999997549999 Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 (144) Q Consensus 29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~ 70 (144) |-...|+.+|+|++++|+ .|..+-+.||+++ T Consensus 22 s~t~AA~~l~isq~avs~-----------~l~~lE~~~g~~L 52 (89) T d2esna1 22 NVGTAASELAISASAFSH-----------ALGRLRQGLDDEL 52 (89) T ss_dssp SHHHHHHHHTCCHHHHHH-----------HHHHHHHHHTSCC T ss_pred CHHHHHHHHCCCCCHHHH-----------HHHHHHHCCCCEE T ss_conf 999999987799847559-----------9999986577300 No 203 >d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]} Probab=22.04 E-value=20 Score=13.60 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=6.3 Q ss_pred CHHHHHHHHHHCC Q ss_conf 5899999997549 Q gi|254780424|r 55 GASRLQHISEVLE 67 (144) Q Consensus 55 s~~~L~~iA~~l~ 67 (144) ..+.+.+||+.+| T Consensus 27 a~~l~~~l~~~~g 39 (94) T d1rr7a_ 27 SLEIVVAICKHLG 39 (94) T ss_dssp HHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999979 No 204 >d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]} Probab=20.85 E-value=21 Score=13.44 Aligned_cols=36 Identities=8% Similarity=0.235 Sum_probs=26.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-----CCCCCCCHHHHHHH Q ss_conf 9979999998724699999985-----28988358999999 Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYE-----KGVNRVGASRLQHI 62 (144) Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E-----~G~~~ps~~~L~~i 62 (144) -+|++|+.++-|+|.+.+..|. .|........|.+. T Consensus 50 l~S~~EAcrrY~LS~eEf~~W~~a~~~hGe~aLr~t~~q~y 90 (93) T d2oa4a1 50 LITLAEAKQTYGLSDEEFNSWVSALAEHGKDALKVTALKKY 90 (93) T ss_dssp TCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSSSCCHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 57799999883999999999999999986999999989998 No 205 >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Probab=20.47 E-value=21 Score=13.39 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=16.9 Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 852898835899999997549999995 Q gi|254780424|r 47 YEKGVNRVGASRLQHISEVLESPISFF 73 (144) Q Consensus 47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144) |+.+...|+.+.+..||+.+|++.... T Consensus 20 F~~~~~yPs~~~~~~LA~~lgls~~qV 46 (59) T d2cqxa1 20 FVSVTKYPDEKRLKGLSKQLDWSVRKI 46 (59) T ss_dssp HHHTCSSCCHHHHHHHHHHTTCCHHHH T ss_pred HHHCCCCCCHHHHHHHHHHHCCCHHHH T ss_conf 988489959999999999978199999 Done!