BLAST/PSIBLAST alignment of GI: 254780424 and GI: 116250159 at iteration 1
>gi|116250159|ref|YP_765997.1| HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 138
>gi|115254807|emb|CAK05881.1| putative HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 138
 Score =  171 bits (433), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 105/133 (78%), Gaps = 5/133 (3%)

Query: 1   MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60
           M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ
Sbjct: 1   MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60

Query: 61  HISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115
           +IS +L  P+SFFF+ +P   S       +S  N V+DF+S+ +GLQLNR F++I D KV
Sbjct: 61  NISNILNVPVSFFFEDAPGEHSSAGGGMEASSSNYVVDFLSSSEGLQLNRAFVKISDPKV 120

Query: 116 RQKIIELVRSIVS 128
           R+K++ELV+++ +
Sbjct: 121 RRKVVELVKALAA 133