BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] (144 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040101|gb|ACT56897.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 144 Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ Sbjct: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII Sbjct: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 ELVRSIVSSEKKYRTIEEECMVEQ Sbjct: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 >gi|315122130|ref|YP_004062619.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495532|gb|ADR52131.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 145 Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 108/139 (77%), Positives = 119/139 (85%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+GNKK PNPVDINVGKRIRLRR ILGMSQEKLG+ LGITFQQVQKYEKGVNRVGASRLQ Sbjct: 1 MIGNKKTPNPVDINVGKRIRLRRTILGMSQEKLGDSLGITFQQVQKYEKGVNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +IS L+ PISFFFD P VCS SEENN+MDF+S+ DGLQLNR+F QI DVKVRQKII Sbjct: 61 NISRALDIPISFFFDDPPEVCSGALSEENNIMDFLSSSDGLQLNRHFTQIKDVKVRQKII 120 Query: 121 ELVRSIVSSEKKYRTIEEE 139 +LV+SIVS EK +EEE Sbjct: 121 DLVKSIVSLEKSTIALEEE 139 >gi|241202771|ref|YP_002973867.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856661|gb|ACS54328.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 138 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 81/133 (60%), Positives = 106/133 (79%), Gaps = 5/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +IS +L P+SFFF+ +P S+ +S N V+DF+S+ +GLQLNR F++I D KV Sbjct: 61 NISNILNVPVSFFFEDAPGEHSNAGGGMETSSSNYVVDFLSSSEGLQLNRAFVKISDPKV 120 Query: 116 RQKIIELVRSIVS 128 R+K++ELV+++ + Sbjct: 121 RRKVVELVKALAA 133 >gi|222084698|ref|YP_002543227.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722146|gb|ACM25302.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 139 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 81/134 (60%), Positives = 106/134 (79%), Gaps = 6/134 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSP----TVCSDI--SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P T + +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISSILNVPVSFFFEDAPGDHTTTAGGLAEASSSNYVVDFLSSSEGLQLNRAFVKISDGK 120 Query: 115 VRQKIIELVRSIVS 128 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAA 134 >gi|116250159|ref|YP_765997.1| HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254807|emb|CAK05881.1| putative HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 138 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 81/133 (60%), Positives = 105/133 (78%), Gaps = 5/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +IS +L P+SFFF+ +P S +S N V+DF+S+ +GLQLNR F++I D KV Sbjct: 61 NISNILNVPVSFFFEDAPGEHSSAGGGMEASSSNYVVDFLSSSEGLQLNRAFVKISDPKV 120 Query: 116 RQKIIELVRSIVS 128 R+K++ELV+++ + Sbjct: 121 RRKVVELVKALAA 133 >gi|190890041|ref|YP_001976583.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|218510206|ref|ZP_03508084.1| probable transcriptional regulator protein [Rhizobium etli Brasil 5] gi|218670147|ref|ZP_03519818.1| probable transcriptional regulator protein [Rhizobium etli GR56] gi|190695320|gb|ACE89405.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] gi|327188600|gb|EGE55810.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 139 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 81/134 (60%), Positives = 105/134 (78%), Gaps = 6/134 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P S +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISSILNVPVSFFFEDAPGEHSGAIGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVS 128 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAA 134 >gi|90420537|ref|ZP_01228444.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335265|gb|EAS49018.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 139 Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 82/134 (61%), Positives = 105/134 (78%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV NKK PNPVDI+VG R+RLRR +LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MVDNKKKPNPVDIHVGSRVRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 ISEV+ P+SFFF+ +PT + S + V+DF+S+ +GLQLNR F++I D KV Sbjct: 61 RISEVMTVPVSFFFEDAPTGMTGSESLQEPSSPDYVVDFLSSSEGLQLNRAFVRISDPKV 120 Query: 116 RQKIIELVRSIVSS 129 R+++I+LVR++ S Sbjct: 121 RRRVIDLVRTLADS 134 >gi|227820634|ref|YP_002824604.1| putative transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339633|gb|ACP23851.1| putative transcriptional regulator [Sinorhizobium fredii NGR234] Length = 136 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/131 (61%), Positives = 104/131 (79%), Gaps = 3/131 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MVENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +IS +L P+SFFF+ +P +E N V+DF+S+ +GLQLNR F++I D KVR+ Sbjct: 61 NISSILNVPVSFFFEDAPGEAGSGMAEAPSSNYVVDFLSSSEGLQLNRAFVKISDPKVRR 120 Query: 118 KIIELVRSIVS 128 K+++LV+++ + Sbjct: 121 KLVDLVKALAA 131 >gi|325291795|ref|YP_004277659.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059648|gb|ADY63339.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 140 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/134 (59%), Positives = 104/134 (77%), Gaps = 6/134 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 2 MTENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 61 Query: 61 HISEVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P T +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 62 NISAILNVPVSFFFEDAPGDQAVGTTGMAEASSSNYVVDFLSSAEGLQLNRAFVKIADPK 121 Query: 115 VRQKIIELVRSIVS 128 VR+++++LV+S+ + Sbjct: 122 VRRRLVDLVKSLAA 135 >gi|254470793|ref|ZP_05084196.1| dna-binding protein [Pseudovibrio sp. JE062] gi|211959935|gb|EEA95132.1| dna-binding protein [Pseudovibrio sp. JE062] Length = 135 Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 75/132 (56%), Positives = 104/132 (78%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +KK PNP+D++VG R+RLRRM+LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ Sbjct: 3 SKKAPNPIDVHVGSRVRLRRMMLGMSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIA 62 Query: 64 EVLESPISFFFDVSPTVCSDISSEENN-----VMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +L+ P++FFF+ +P + +N V+DF+S+ DGL LN+ F++I++ KVR+K Sbjct: 63 TILKVPVAFFFEDAPGTPDETPGVGDNPQTTYVVDFLSSSDGLALNKAFVRIENPKVRKK 122 Query: 119 IIELVRSIVSSE 130 ++ELV+SI E Sbjct: 123 VVELVKSIAGDE 134 >gi|222147356|ref|YP_002548313.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734346|gb|ACM35309.1| transcriptional regulator [Agrobacterium vitis S4] Length = 140 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 79/135 (58%), Positives = 107/135 (79%), Gaps = 7/135 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MLENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPT--VCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +IS +L P+SFFF+ +P V + ++ N V+DF+S+ +GLQLNR F++I+D Sbjct: 61 NISSILNVPVSFFFEDAPGEQVVAGANGFSEAASSNYVVDFLSSSEGLQLNRAFVKINDP 120 Query: 114 KVRQKIIELVRSIVS 128 KVR+K+++LV+++ + Sbjct: 121 KVRRKVVDLVKALAA 135 >gi|159184276|ref|NP_353393.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139603|gb|AAK86178.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 139 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 79/134 (58%), Positives = 104/134 (77%), Gaps = 6/134 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P T +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISGILNVPVSFFFEDAPGDQVGGTSGMAEASSSNYVVDFLSSAEGLQLNRAFVKIADPK 120 Query: 115 VRQKIIELVRSIVS 128 VR+++++LV+++ + Sbjct: 121 VRRRLVDLVKALAA 134 >gi|163757744|ref|ZP_02164833.1| dna-binding protein [Hoeflea phototrophica DFL-43] gi|162285246|gb|EDQ35528.1| dna-binding protein [Hoeflea phototrophica DFL-43] Length = 139 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/134 (59%), Positives = 105/134 (78%), Gaps = 6/134 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGEALGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P + ++ N V+DF+S+ +GLQLNR FI+I D K Sbjct: 61 NISTILNVPVSFFFEDAPGDPATGQPGMAEANSSNYVVDFLSSSEGLQLNRAFIKIPDPK 120 Query: 115 VRQKIIELVRSIVS 128 VR+++++LV+S+ S Sbjct: 121 VRRRLVDLVKSLAS 134 >gi|15964163|ref|NP_384516.1| DNA-binding protein [Sinorhizobium meliloti 1021] gi|150395273|ref|YP_001325740.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|307301308|ref|ZP_07581070.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307317979|ref|ZP_07597416.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|160358932|sp|A6U5H5|Y045_SINMW RecName: Full=Uncharacterized HTH-type transcriptional regulator Smed_0045 gi|160358955|sp|P0C5S2|Y410_RHIME RecName: Full=Uncharacterized HTH-type transcriptional regulator R00410 gi|2564960|gb|AAB81868.1| DNA-binding protein [Sinorhizobium medicae WSM419] gi|15073339|emb|CAC41847.1| Transcription regulator [Sinorhizobium meliloti 1021] gi|150026788|gb|ABR58905.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] gi|306896381|gb|EFN27130.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903764|gb|EFN34351.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 139 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/134 (58%), Positives = 105/134 (78%), Gaps = 6/134 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS++L P+SFFF+ +P +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISQILNVPVSFFFEDAPGDGGGTGPGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVS 128 VR+K+++LV+++ + Sbjct: 121 VRRKLVDLVKALAA 134 >gi|307942740|ref|ZP_07658085.1| transcriptional regulator protein [Roseibium sp. TrichSKD4] gi|307773536|gb|EFO32752.1| transcriptional regulator protein [Roseibium sp. TrichSKD4] Length = 135 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 74/132 (56%), Positives = 104/132 (78%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +KK PNP+D++VG R+RLRRM+LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ Sbjct: 3 SKKAPNPIDVHVGSRVRLRRMMLGMSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIA 62 Query: 64 EVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +L+ P++FFF+ +P + + + V+DF+S+ +GL LN+ F++IDD KVR++ Sbjct: 63 TILKVPVAFFFEDAPGTPEEAEGFGEAQPTSYVVDFLSSSEGLSLNKAFVRIDDPKVRRR 122 Query: 119 IIELVRSIVSSE 130 I++LVRS+ E Sbjct: 123 IVDLVRSLAGDE 134 >gi|86356028|ref|YP_467920.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280130|gb|ABC89193.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 139 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 79/134 (58%), Positives = 102/134 (76%), Gaps = 6/134 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISSILNVPVSFFFEDAPGEHAGAAGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVS 128 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAA 134 >gi|209547626|ref|YP_002279543.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533382|gb|ACI53317.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 139 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/134 (58%), Positives = 102/134 (76%), Gaps = 6/134 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISNILNVPVSFFFEDAPGEHAGAGGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVS 128 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAA 134 >gi|153008089|ref|YP_001369304.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559977|gb|ABS13475.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 135 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 77/132 (58%), Positives = 102/132 (77%), Gaps = 4/132 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDVHVGSRIRLRRNMLGLSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVR 116 IS +L P+SFFF+ +P + E+N V+DF+++ +G+QL R F +I D KVR Sbjct: 61 AISAILNVPVSFFFEDAPGSSNQAGFAEDNEATYVVDFLNSNEGVQLTRAFTKISDPKVR 120 Query: 117 QKIIELVRSIVS 128 +KII+LV+S+ + Sbjct: 121 RKIIDLVKSLAA 132 >gi|239833207|ref|ZP_04681536.1| DNA-binding-domin protein [Ochrobactrum intermedium LMG 3301] gi|239825474|gb|EEQ97042.1| DNA-binding-domin protein [Ochrobactrum intermedium LMG 3301] Length = 135 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 77/132 (58%), Positives = 102/132 (77%), Gaps = 4/132 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDVHVGSRIRLRRNMLGLSQEKLGENLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVR 116 IS +L P+SFFF+ +P + E+N V+DF+++ +G+QL R F +I D KVR Sbjct: 61 AISAILNVPVSFFFEDAPGSSNQAGFAEDNEATYVVDFLNSNEGVQLTRAFTKISDPKVR 120 Query: 117 QKIIELVRSIVS 128 +KII+LV+S+ + Sbjct: 121 RKIIDLVKSLAA 132 >gi|260461987|ref|ZP_05810232.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259032234|gb|EEW33500.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 139 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 77/133 (57%), Positives = 105/133 (78%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ I+ Sbjct: 5 NKKKPNPIDIHVGSRIRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRLQAIA 64 Query: 64 EVLESPISFFFDVSPTVCSDIS---SEENNV---MDFISTPDGLQLNRYFIQIDDVKVRQ 117 +L P++FFF+ +P S + +E+ ++ ++F +P+GLQLNR F++I DVKVR+ Sbjct: 65 SILGVPVAFFFEDAPGQESSANRGFAEDASMAFAVEFCGSPEGLQLNRAFVKIADVKVRR 124 Query: 118 KIIELVRSIVSSE 130 +II+LV+S+ + + Sbjct: 125 RIIDLVKSLAADD 137 >gi|13474622|ref|NP_106191.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025376|dbj|BAB51977.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 139 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 76/133 (57%), Positives = 103/133 (77%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+DI+VG R+RLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ I+ Sbjct: 5 NKKKPNPIDIHVGSRVRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRLQAIA 64 Query: 64 EVLESPISFFFDVSP---TVCSDISSEENNV---MDFISTPDGLQLNRYFIQIDDVKVRQ 117 +L P++FFF+ +P SE+ ++ ++F +P+GLQLNR F++I DVKVR+ Sbjct: 65 SILGVPVAFFFEDAPGQEAAPGRGFSEDASMAFAVEFCGSPEGLQLNRAFVKIADVKVRR 124 Query: 118 KIIELVRSIVSSE 130 +II+LV+S+ + + Sbjct: 125 RIIDLVKSLAADD 137 >gi|17988254|ref|NP_540888.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23503007|ref|NP_699134.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|62290996|ref|YP_222789.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82700905|ref|YP_415479.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|148558969|ref|YP_001259953.1| Cro/CI family transcriptional regulator [Brucella ovis ATCC 25840] gi|161620067|ref|YP_001593954.1| hypothetical protein BCAN_A2201 [Brucella canis ATCC 23365] gi|163844172|ref|YP_001628577.1| hypothetical protein BSUIS_A1996 [Brucella suis ATCC 23445] gi|189025208|ref|YP_001935976.1| Helix-turn-helix motif [Brucella abortus S19] gi|225626524|ref|ZP_03784563.1| DNA-binding domain protein [Brucella ceti str. Cudo] gi|225853584|ref|YP_002733817.1| XRE family transcriptional regulator [Brucella melitensis ATCC 23457] gi|237816498|ref|ZP_04595491.1| DNA-binding protein [Brucella abortus str. 2308 A] gi|254690290|ref|ZP_05153544.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 6 str. 870] gi|254694778|ref|ZP_05156606.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 3 str. Tulya] gi|254696406|ref|ZP_05158234.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700788|ref|ZP_05162616.1| transcriptional regulator, XRE family protein [Brucella suis bv. 5 str. 513] gi|254705157|ref|ZP_05166985.1| transcriptional regulator, XRE family protein [Brucella suis bv. 3 str. 686] gi|254707325|ref|ZP_05169153.1| transcriptional regulator, XRE family protein [Brucella pinnipedialis M163/99/10] gi|254709133|ref|ZP_05170944.1| transcriptional regulator, XRE family protein [Brucella pinnipedialis B2/94] gi|254713442|ref|ZP_05175253.1| transcriptional regulator, XRE family protein [Brucella ceti M644/93/1] gi|254716202|ref|ZP_05178013.1| transcriptional regulator, XRE family protein [Brucella ceti M13/05/1] gi|254718196|ref|ZP_05180007.1| transcriptional regulator, XRE family protein [Brucella sp. 83/13] gi|254731319|ref|ZP_05189897.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 4 str. 292] gi|256030658|ref|ZP_05444272.1| transcriptional regulator, XRE family protein [Brucella pinnipedialis M292/94/1] gi|256045762|ref|ZP_05448640.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060119|ref|ZP_05450301.1| transcriptional regulator, XRE family protein [Brucella neotomae 5K33] gi|256112481|ref|ZP_05453402.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 3 str. Ether] gi|256158660|ref|ZP_05456543.1| transcriptional regulator, XRE family protein [Brucella ceti M490/95/1] gi|256254064|ref|ZP_05459600.1| transcriptional regulator, XRE family protein [Brucella ceti B1/94] gi|256258543|ref|ZP_05464079.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 9 str. C68] gi|256262932|ref|ZP_05465464.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|256370554|ref|YP_003108065.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260169562|ref|ZP_05756373.1| transcriptional regulator, Cro/CI family protein [Brucella sp. F5/99] gi|260546259|ref|ZP_05821999.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260563058|ref|ZP_05833544.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260567374|ref|ZP_05837844.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|260755830|ref|ZP_05868178.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759053|ref|ZP_05871401.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760778|ref|ZP_05873121.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884855|ref|ZP_05896469.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261215105|ref|ZP_05929386.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261217976|ref|ZP_05932257.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261221205|ref|ZP_05935486.1| transcriptional regulator [Brucella ceti B1/94] gi|261314807|ref|ZP_05954004.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316633|ref|ZP_05955830.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321174|ref|ZP_05960371.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261324096|ref|ZP_05963293.1| transcriptional regulator [Brucella neotomae 5K33] gi|261751297|ref|ZP_05995006.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755862|ref|ZP_05999571.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261759090|ref|ZP_06002799.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|265983154|ref|ZP_06095889.1| transcriptional regulator [Brucella sp. 83/13] gi|265987705|ref|ZP_06100262.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992179|ref|ZP_06104736.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993917|ref|ZP_06106474.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265997166|ref|ZP_06109723.1| transcriptional regulator [Brucella ceti M490/95/1] gi|294851383|ref|ZP_06792056.1| HTH-type transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297247382|ref|ZP_06931100.1| HTH-type transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306837710|ref|ZP_07470579.1| transcriptional regulator protein [Brucella sp. NF 2653] gi|306842733|ref|ZP_07475375.1| transcriptional regulator protein [Brucella sp. BO2] gi|306843576|ref|ZP_07476177.1| transcriptional regulator protein [Brucella sp. BO1] gi|17984022|gb|AAL53152.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23349047|gb|AAN31049.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] gi|62197128|gb|AAX75428.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1 str. 9-941] gi|82617006|emb|CAJ12115.1| Helix-turn-helix motif [Brucella melitensis biovar Abortus 2308] gi|148370226|gb|ABQ60205.1| transcriptional regulator, Cro/CI family [Brucella ovis ATCC 25840] gi|161336878|gb|ABX63183.1| hypothetical protein BCAN_A2201 [Brucella canis ATCC 23365] gi|163674895|gb|ABY39006.1| hypothetical protein BSUIS_A1996 [Brucella suis ATCC 23445] gi|189020780|gb|ACD73502.1| Helix-turn-helix motif [Brucella abortus S19] gi|225618181|gb|EEH15224.1| DNA-binding domain protein [Brucella ceti str. Cudo] gi|225641949|gb|ACO01863.1| transcriptional regulator, XRE family protein [Brucella melitensis ATCC 23457] gi|237788565|gb|EEP62780.1| DNA-binding protein [Brucella abortus str. 2308 A] gi|256000717|gb|ACU49116.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260096366|gb|EEW80242.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260153074|gb|EEW88166.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260156892|gb|EEW91972.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|260669371|gb|EEX56311.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671210|gb|EEX58031.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675938|gb|EEX62759.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874383|gb|EEX81452.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260916712|gb|EEX83573.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919789|gb|EEX86442.1| transcriptional regulator [Brucella ceti B1/94] gi|260923065|gb|EEX89633.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293864|gb|EEX97360.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261295856|gb|EEX99352.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300076|gb|EEY03573.1| transcriptional regulator [Brucella neotomae 5K33] gi|261303833|gb|EEY07330.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261739074|gb|EEY27070.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|261741050|gb|EEY28976.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261745615|gb|EEY33541.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262551634|gb|EEZ07624.1| transcriptional regulator [Brucella ceti M490/95/1] gi|262764898|gb|EEZ10819.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003245|gb|EEZ15538.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092806|gb|EEZ16981.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264659902|gb|EEZ30163.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264661746|gb|EEZ32007.1| transcriptional regulator [Brucella sp. 83/13] gi|294819972|gb|EFG36971.1| HTH-type transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297174551|gb|EFH33898.1| HTH-type transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306276267|gb|EFM57967.1| transcriptional regulator protein [Brucella sp. BO1] gi|306287077|gb|EFM58582.1| transcriptional regulator protein [Brucella sp. BO2] gi|306407268|gb|EFM63478.1| transcriptional regulator protein [Brucella sp. NF 2653] gi|326410157|gb|ADZ67222.1| Helix-turn-helix motif protein [Brucella melitensis M28] gi|326539875|gb|ADZ88090.1| transcriptional regulator, XRE family protein [Brucella melitensis M5-90] Length = 137 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/134 (57%), Positives = 101/134 (75%), Gaps = 6/134 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDMHVGSRIRLRRNMLGLSQEKLGENLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 IS +L P+SFFF+ +P S +E V+DF+++ +G+QL R F +I D K Sbjct: 61 AISSILNVPVSFFFEDAPGSGSSGGDGFAEDNEATYVVDFLNSNEGVQLTRAFTKISDPK 120 Query: 115 VRQKIIELVRSIVS 128 VR+KII+LV+S+ + Sbjct: 121 VRRKIIDLVKSLAA 134 >gi|319779776|ref|YP_004139252.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165664|gb|ADV09202.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 139 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/133 (57%), Positives = 103/133 (77%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ I+ Sbjct: 5 NKKKPNPIDIHVGSRIRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRLQAIA 64 Query: 64 EVLESPISFFFDVSP---TVCSDISSEENNV---MDFISTPDGLQLNRYFIQIDDVKVRQ 117 +L P++FFF+ +P V +E+ ++ ++F +P+GLQLNR F++I D KVR+ Sbjct: 65 SILGVPVAFFFEDAPGQEPVAGRGFAEDASMAFAVEFCGSPEGLQLNRAFVKIADAKVRR 124 Query: 118 KIIELVRSIVSSE 130 +II+LV+S+ + + Sbjct: 125 RIIDLVKSLSADD 137 >gi|158421637|ref|YP_001522929.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158328526|dbj|BAF86011.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 150 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/133 (54%), Positives = 96/133 (72%), Gaps = 7/133 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D +VG R+R+RRM++GMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ IS Sbjct: 3 KKAPNPIDKHVGSRVRMRRMMVGMSQEKLGEHLGITFQQIQKYEKGTNRIGASRLQQISI 62 Query: 65 VLESPISFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 VL P++FFF+ +P+ + E V DF++T DGL L R F++I D KVR+ Sbjct: 63 VLSVPVAFFFEGAPSANPEADGEGFAEGHSPAYVSDFLATSDGLALTRNFMRISDAKVRR 122 Query: 118 KIIELVRSIVSSE 130 +I++LV +I E Sbjct: 123 RIVDLVSAIAGEE 135 >gi|110636247|ref|YP_676455.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110287231|gb|ABG65290.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 140 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 73/130 (56%), Positives = 102/130 (78%), Gaps = 5/130 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +KK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ I+ Sbjct: 5 DKKRPNPIDVHVGSRIRLRRNMLGISQEKLGESLGITFQQIQKYEKGTNRVGASRLQAIA 64 Query: 64 EVLESPISFFFDVSPTVCSDIS---SEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +L +P+SFFF+ +P D +EE V DF+S+ +G+QLNR F++I D KVR++ Sbjct: 65 SILNAPVSFFFEGAPNEDGDPVAGLAEEGTPYVGDFLSSSEGIQLNRAFVRITDPKVRRR 124 Query: 119 IIELVRSIVS 128 +++LV+++ + Sbjct: 125 VLDLVKALAT 134 >gi|304393079|ref|ZP_07375008.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303294844|gb|EFL89215.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 150 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 69/132 (52%), Positives = 100/132 (75%), Gaps = 6/132 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK PNP+DI+VG R+RLRR + GMSQEKLG+ LGITFQQ+QKYEKG NR+GASR+Q Sbjct: 1 MAEKKTPNPIDIHVGSRVRLRRTMQGMSQEKLGDALGITFQQIQKYEKGTNRIGASRMQQ 60 Query: 62 ISEVLESPISFFFDVSPT-VCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 IS L+ P++FFF+ +P V ++ +S V+DF+S+P+G+QLNR F++I + Sbjct: 61 ISSALDVPVAFFFEDAPADVINNATGMHETSATTYVVDFLSSPEGIQLNRAFVRITSPAI 120 Query: 116 RQKIIELVRSIV 127 R+++IE+VR++ Sbjct: 121 RRRVIEMVRTLA 132 >gi|217979023|ref|YP_002363170.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217504399|gb|ACK51808.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 166 Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 99/138 (71%), Gaps = 12/138 (8%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKIPNP+D +VG R+R+RR+ILGMSQEKLGE LG+TFQQVQKYEKG NR+GASRLQ IS Sbjct: 12 KKIPNPIDRHVGSRVRMRRVILGMSQEKLGEALGLTFQQVQKYEKGANRIGASRLQQISR 71 Query: 65 VLESPISFFFDVSPTVCSDIS---------SEENN---VMDFISTPDGLQLNRYFIQIDD 112 L+ P +FFF+ +P+ + + +EE N V DF+ST +GL LN F +I D Sbjct: 72 TLDVPPAFFFEGAPSFEASATGGSPALGGVAEEANSSYVADFLSTAEGLHLNMAFARIHD 131 Query: 113 VKVRQKIIELVRSIVSSE 130 KVR++II+L+ ++ + Sbjct: 132 PKVRKRIIDLISALAGDD 149 >gi|298293906|ref|YP_003695845.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296930417|gb|ADH91226.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 135 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/129 (56%), Positives = 99/129 (76%), Gaps = 5/129 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D +VG R+R+RRM++GMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ+IS Sbjct: 3 KKSPNPIDKHVGSRVRMRRMMIGMSQEKLGENLGITFQQIQKYEKGTNRIGASRLQNISN 62 Query: 65 VLESPISFFFDVSPTV-CSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 VL P+SFFF+ +P V ++ E+ V DF++T +GL L R F++I D KVR++I Sbjct: 63 VLGVPVSFFFEGAPNVGIANTGFAEDASPAYVSDFLATTEGLALTRAFLKIADSKVRRRI 122 Query: 120 IELVRSIVS 128 ++LV ++ S Sbjct: 123 VDLVEALAS 131 >gi|154245759|ref|YP_001416717.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159844|gb|ABS67060.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 137 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/129 (58%), Positives = 98/129 (75%), Gaps = 5/129 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D +VG R+R+RRM++ MSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ IS Sbjct: 3 KKAPNPIDKHVGSRVRMRRMMVSMSQEKLGEHLGITFQQIQKYEKGTNRIGASRLQQIST 62 Query: 65 VLESPISFFFDVSPTVCSDIS--SEENN---VMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 VL P++FFF+ +PTV + SE+ + V DF++T DGL L R F++I D KVR++I Sbjct: 63 VLGVPVAFFFEGAPTVGPEGEGFSEDQSPAYVSDFLATSDGLTLTRNFMRITDPKVRRRI 122 Query: 120 IELVRSIVS 128 +ELV +I Sbjct: 123 VELVIAIAG 131 >gi|319405105|emb|CBI78709.1| transcriptional regulator [Bartonella sp. AR 15-3] Length = 137 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/128 (56%), Positives = 96/128 (75%), Gaps = 2/128 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTKTRKKPDPIDIYVGARIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + S + +NN +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIAIQSIDGFTESDNNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSI 126 II+L +++ Sbjct: 121 IIDLAKAL 128 >gi|319406551|emb|CBI80193.1| transcriptional regulator [Bartonella sp. 1-1C] Length = 137 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/128 (56%), Positives = 97/128 (75%), Gaps = 2/128 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTKTRKKPDPMDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ S + +NN +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGISIQSLEGFTESDNNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSI 126 II+L +++ Sbjct: 121 IIDLAKAL 128 >gi|49473876|ref|YP_031918.1| transcriptional regulator [Bartonella quintana str. Toulouse] gi|49239379|emb|CAF25712.1| Transcriptional regulator [Bartonella quintana str. Toulouse] Length = 137 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/128 (55%), Positives = 95/128 (74%), Gaps = 2/128 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETKKNPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + + +N+ MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIDSQHVEGFAESDNSFMDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSI 126 II+L +++ Sbjct: 121 IIDLAKAL 128 >gi|163867517|ref|YP_001608716.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161017163|emb|CAK00721.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 139 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 70/128 (54%), Positives = 96/128 (75%), Gaps = 2/128 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + ++N MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGLTSQQVEGFAESDHNFMDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSI 126 II+L +++ Sbjct: 121 IIDLAKAL 128 >gi|49475033|ref|YP_033074.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49237838|emb|CAF27033.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 138 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/132 (53%), Positives = 96/132 (72%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+D+ VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETRKKPDPIDVYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD V + +N+ MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGVGTQQVEGFAESDNDFMDFCSSSEGIQLMRAFTNISDSKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ E Sbjct: 121 IIDLAKALSEEE 132 >gi|182678047|ref|YP_001832193.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633930|gb|ACB94704.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 155 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/139 (51%), Positives = 100/139 (71%), Gaps = 11/139 (7%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK+PNP+D +VG ++R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NR+GASRLQ IS Sbjct: 2 KKVPNPIDCHVGGKVRMRRVMLGMSQEKLGEALGLTFQQVQKYEKGTNRIGASRLQQISR 61 Query: 65 VLESPISFFFDVSPT-----------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +L+ P +FFFD +P + + + + V +F++TP+GL LN F +I D Sbjct: 62 ILDVPPAFFFDGAPAFEGMPRPNAPVIPTGDEASLSYVTEFLATPEGLHLNLAFRRIKDP 121 Query: 114 KVRQKIIELVRSIVSSEKK 132 KVR++I+ELV +I E++ Sbjct: 122 KVRKRIVELVMAIAGDEEQ 140 >gi|92115659|ref|YP_575388.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91798553|gb|ABE60928.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis X14] Length = 139 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 73/137 (53%), Positives = 97/137 (70%), Gaps = 6/137 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSP----TVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++L+ P+SF F+ SP V +S + V DF++T +GL L R F +I D K+R+ Sbjct: 62 DILQVPVSFLFEGSPGTGIAVAGGLSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRR 121 Query: 118 KIIELVRSIVSSEKKYR 134 I++LV I + E R Sbjct: 122 SIVDLVEQIAAREPPDR 138 >gi|319403635|emb|CBI77220.1| transcriptional regulator [Bartonella rochalimae ATCC BAA-1498] Length = 137 Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 72/128 (56%), Positives = 96/128 (75%), Gaps = 2/128 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTKTRKKPDPMDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + S + +NN +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIGIQSLEGFTESDNNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSI 126 II+L +++ Sbjct: 121 IIDLAKAL 128 >gi|319898343|ref|YP_004158436.1| transcriptional regulator [Bartonella clarridgeiae 73] gi|319402307|emb|CBI75846.1| transcriptional regulator [Bartonella clarridgeiae 73] Length = 137 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 74/128 (57%), Positives = 96/128 (75%), Gaps = 2/128 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + S EE NN M+F S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIGIQSVEGFEESDNNFMNFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSI 126 II+L +++ Sbjct: 121 IIDLAKAL 128 >gi|319408017|emb|CBI81671.1| transcriptional regulator [Bartonella schoenbuchensis R1] Length = 136 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 71/127 (55%), Positives = 95/127 (74%), Gaps = 1/127 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+D+ VG RIRLRR +LG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTETRKKPDPIDVYVGTRIRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPT-VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+E+++ P+S+FFD T + E+N MDF S+ +G+QL R F I D KVR+KI Sbjct: 61 AIAEIMDVPVSYFFDKGITQSVEGFAESESNFMDFCSSSEGIQLMRAFTNILDAKVRRKI 120 Query: 120 IELVRSI 126 I+L +++ Sbjct: 121 IDLAKAL 127 >gi|296445773|ref|ZP_06887726.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] gi|296256753|gb|EFH03827.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] Length = 145 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/128 (55%), Positives = 100/128 (78%), Gaps = 5/128 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R++R++L MSQEKLGE LG+TFQQVQKYEKG NR+GASRLQ IS+ Sbjct: 2 KKAPDPIDRHVGSRVRMQRVLLKMSQEKLGEALGLTFQQVQKYEKGTNRIGASRLQQISK 61 Query: 65 VLESPISFFFDVSPTVCS--DISSEENN---VMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L P SFFFD +P+V + D +EE++ V++F+ST +GL LNR F +I D KVR+++ Sbjct: 62 TLNVPPSFFFDGAPSVGAPGDGFAEESSSQYVVEFLSTAEGLHLNRAFARIKDPKVRKRV 121 Query: 120 IELVRSIV 127 I+L+ ++ Sbjct: 122 IDLISTLA 129 >gi|240849887|ref|YP_002971275.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240267010|gb|ACS50598.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 137 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 69/128 (53%), Positives = 96/128 (75%), Gaps = 2/128 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + ++N +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGITSQQVEGFAESDHNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSI 126 II+L +++ Sbjct: 121 IIDLAKAL 128 >gi|85714180|ref|ZP_01045169.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85699306|gb|EAQ37174.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 139 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/133 (54%), Positives = 96/133 (72%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSP-TVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ SP T S I + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGSPGTGVSRIDGLSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I+++V I + E Sbjct: 122 SIVDMVEQIAARE 134 >gi|75674218|ref|YP_316639.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419088|gb|ABA03287.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 139 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/133 (54%), Positives = 97/133 (72%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSP---TVCSDISSEENN---VMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ SP V + SE + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGSPGTGVVRTGGMSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I+++V I + E Sbjct: 122 SIVDMVEQIAARE 134 >gi|323138533|ref|ZP_08073601.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] gi|322396167|gb|EFX98700.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] Length = 141 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/134 (52%), Positives = 101/134 (75%), Gaps = 8/134 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R++R+++ MSQEKLGE LG+TFQQVQKYEKGVNR+GASRLQ IS+ Sbjct: 2 KKTPDPIDRHVGSRVRMQRILMKMSQEKLGEALGLTFQQVQKYEKGVNRIGASRLQQISK 61 Query: 65 VLESPISFFFDVSPTVCSDIS-----SEENN---VMDFISTPDGLQLNRYFIQIDDVKVR 116 L P SFFF+ +PT+ + +EE++ V+DF+ST +G+ LNR F +I D KVR Sbjct: 62 TLNVPPSFFFEGAPTLNGAVDGAGGFAEESSSQYVVDFLSTAEGMHLNRAFARIKDPKVR 121 Query: 117 QKIIELVRSIVSSE 130 +++++LV ++ E Sbjct: 122 KRVLDLVTTLADQE 135 >gi|90421997|ref|YP_530367.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104011|gb|ABD86048.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 138 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/132 (53%), Positives = 93/132 (70%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 E+L+ P+SF F+ P + ++ V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGGPGGLAKADGFAEAASPAYVSDFLATSEGLALTRAFTRITDSKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I S E Sbjct: 122 IVDLVEQIASRE 133 >gi|91974719|ref|YP_567378.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681175|gb|ABE37477.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] Length = 139 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/133 (54%), Positives = 96/133 (72%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPT---VCSDISSEENN---VMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ P+ ++ SE + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGGPSGGLANANGFSEAPSPSYVSDFLATSEGLALTRAFTKISDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I++LV I + E Sbjct: 122 SIVDLVEQIAARE 134 >gi|86747721|ref|YP_484217.1| XRE family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570749|gb|ABD05306.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris HaA2] Length = 139 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/133 (54%), Positives = 93/133 (69%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSDISS------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 EVL+ P+SF F+ P+ S + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EVLQVPVSFLFEGGPSGGLANGSGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I++LV I + E Sbjct: 122 SIVDLVEQIAARE 134 >gi|300024991|ref|YP_003757602.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526812|gb|ADJ25281.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 154 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 71/131 (54%), Positives = 99/131 (75%), Gaps = 9/131 (6%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D++VG R+RLRRM+LGMSQEKLGE LG+TFQQVQKYEKGVNR+GASRL +++VL Sbjct: 23 NPMDVHVGSRVRLRRMLLGMSQEKLGEHLGLTFQQVQKYEKGVNRIGASRLFDLAKVLGV 82 Query: 69 PISFFFDVSPT-------VCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 P+ FF+D +P+ V + + + E+ V+DF+ T +GL+LN+ F +I D KVR+ I Sbjct: 83 PVQFFYDEAPSGVQTTGNVIAGFAEQPGESYVVDFLGTREGLELNKAFARISDPKVRRSI 142 Query: 120 IELVRSIVSSE 130 ++LVRS+ E Sbjct: 143 VDLVRSLAGEE 153 >gi|114705364|ref|ZP_01438272.1| dna-binding protein [Fulvimarina pelagi HTCC2506] gi|114540149|gb|EAU43269.1| dna-binding protein [Fulvimarina pelagi HTCC2506] Length = 138 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 71/116 (61%), Positives = 94/116 (81%), Gaps = 5/116 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK+PNP+DI+VG R+RLRR +L +SQEKLGE LGITFQQVQKYEKG NR+GASRLQ IS Sbjct: 4 NKKMPNPIDIHVGSRVRLRRTMLSLSQEKLGEALGITFQQVQKYEKGTNRIGASRLQRIS 63 Query: 64 EVLESPISFFFDVSPTVCSDIS--SEENN---VMDFISTPDGLQLNRYFIQIDDVK 114 EVL+ P++FFF+ +PT + ++ SE + ++DF+ST +GLQLN+ FI+I + K Sbjct: 64 EVLKVPVAFFFEDAPTNGNTVTGMSEPHGGDYMVDFLSTSEGLQLNKAFIKIGNQK 119 >gi|121602273|ref|YP_989497.1| DNA-binding protein [Bartonella bacilliformis KC583] gi|120614450|gb|ABM45051.1| DNA-binding protein [Bartonella bacilliformis KC583] Length = 137 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 70/128 (54%), Positives = 96/128 (75%), Gaps = 2/128 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR +LG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + ++N MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGINNQPEESFAESDSNFMDFCSSNEGIQLMRAFTNILDAKVRRK 120 Query: 119 IIELVRSI 126 II+L +++ Sbjct: 121 IIDLAKAL 128 >gi|146337220|ref|YP_001202268.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190026|emb|CAL74018.1| conserved hypothetical protein; putative transcriptional regulatory protein HTH type [Bradyrhizobium sp. ORS278] Length = 140 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQ+QKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL+ P+SF F+ P+ ++ + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EVLQVPVSFLFEGVPSGGTNGEAFGEGASPAYVSDFLATSEGLALTRAFTRIHDSKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I E Sbjct: 122 IVDLVEQIADRE 133 >gi|316931572|ref|YP_004106554.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599286|gb|ADU41821.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 139 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/131 (54%), Positives = 92/131 (70%), Gaps = 6/131 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q I+EV Sbjct: 4 KAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIAEV 63 Query: 66 LESPISFFFDVSPTVCSDISS------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L+ P+SF F+ P+ S + V DF++T +GL L R F +I D K+R+ I Sbjct: 64 LQVPVSFLFEGGPSGGLANGSGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRRSI 123 Query: 120 IELVRSIVSSE 130 ++LV I + E Sbjct: 124 VDLVERIAARE 134 >gi|148251675|ref|YP_001236260.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146403848|gb|ABQ32354.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 138 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/131 (53%), Positives = 94/131 (71%), Gaps = 4/131 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQ+QKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 EVL+ P+SF F+ P+ ++ + V DF++T +GL L R F +I D K+R+ I Sbjct: 62 EVLQIPVSFLFEGVPSGSTNGEPFDGASPAYVSDFLATSEGLALTRAFTRIHDSKLRRSI 121 Query: 120 IELVRSIVSSE 130 ++LV I E Sbjct: 122 VDLVEQIADRE 132 >gi|39933520|ref|NP_945796.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192288878|ref|YP_001989483.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39647366|emb|CAE25887.1| possible transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] gi|192282627|gb|ACE99007.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 139 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/133 (54%), Positives = 95/133 (71%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q I+ Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIA 61 Query: 64 EVLESPISFFFDVSPT---VCSDISSEENN---VMDFISTPDGLQLNRYFIQIDDVKVRQ 117 EVL+ P+SF F+ P+ + SE + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EVLQVPVSFLFEGGPSGGLANGNGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I++LV I + E Sbjct: 122 SIVDLVERIAARE 134 >gi|27375901|ref|NP_767430.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349039|dbj|BAC46055.1| bll0790 [Bradyrhizobium japonicum USDA 110] Length = 137 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 67/130 (51%), Positives = 93/130 (71%), Gaps = 5/130 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQ+QKYEKG NRVGASR+Q I+E+ Sbjct: 3 KAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIAEI 62 Query: 66 LESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+SF F+ P+ + + + V DF++T +GL L + F +I D K+R+ I+ Sbjct: 63 LQVPVSFLFEGGPSGVAGPNGFAEGASPSYVSDFLATSEGLALTKAFTRITDAKMRRSIV 122 Query: 121 ELVRSIVSSE 130 +LV I + E Sbjct: 123 DLVEQIAARE 132 >gi|115522230|ref|YP_779141.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516177|gb|ABJ04161.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 140 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/131 (54%), Positives = 94/131 (71%), Gaps = 7/131 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTV------CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ P S+ +S + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGGPGANIKGEGFSEAAS-PSYVSDFLATSEGLALTRAFTRIADSKLRR 120 Query: 118 KIIELVRSIVS 128 I++LV I + Sbjct: 121 SIVDLVEQIAA 131 >gi|299133379|ref|ZP_07026574.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593516|gb|EFI53716.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 136 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 64/132 (48%), Positives = 93/132 (70%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LG+SQEKLG+ LG+TFQQ+QKYEKG NR+GASRL I+ Sbjct: 2 SAKTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIA 61 Query: 64 EVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++L+ P+SF F+ PT + + + V DF++T +GL L R F +I D K+R+ Sbjct: 62 DILQVPVSFLFEGGPTSNTSVEGLGEAPSPAYVSDFLATSEGLALTRAFTKITDAKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I ++ Sbjct: 122 IVDLVEQIAGTQ 133 >gi|154254053|ref|YP_001414877.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154158003|gb|ABS65220.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 147 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 67/128 (52%), Positives = 93/128 (72%), Gaps = 5/128 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K+PNP+D++VG R+R+RRM++GMSQEKLGE LG+TFQQVQKYEKG NR+GASRL I Sbjct: 2 TRKLPNPIDVHVGGRVRMRRMLIGMSQEKLGESLGLTFQQVQKYEKGSNRIGASRLYQIG 61 Query: 64 EVLESPISFFFD-VSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 VL PI +FF+ V P + D + MD +ST +G+QLN F I D K+R++ Sbjct: 62 SVLGVPIEYFFEGVEPGEGNGMEPDAAPSPGFDMDILSTAEGIQLNSAFFAIADPKLRKR 121 Query: 119 IIELVRSI 126 I++LV+++ Sbjct: 122 ILDLVKAL 129 >gi|312115567|ref|YP_004013163.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220696|gb|ADP72064.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 174 Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 69/133 (51%), Positives = 100/133 (75%), Gaps = 10/133 (7%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVDI+VG R+R RRMI+GMSQEKLGE + +TFQQ+QKYEKG NR+GASRL +S++LE Sbjct: 29 PNPVDIHVGSRVRYRRMIVGMSQEKLGEKMNLTFQQIQKYEKGTNRIGASRLFQLSKILE 88 Query: 68 SPISFFFD-----VSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 P+ +FF+ +P+ S E E ++DF+++ +GL+LN+ F +I D KVR+++ Sbjct: 89 VPVGYFFEDAFAHSAPSSASHGLHEPEQEGFLLDFLNSREGLELNKAFAKIQDPKVRRRV 148 Query: 120 IELVRSIVSSEKK 132 I+LVR++ SE+K Sbjct: 149 IDLVRAL--SEEK 159 >gi|209883668|ref|YP_002287525.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] gi|209871864|gb|ACI91660.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] Length = 148 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 67/134 (50%), Positives = 96/134 (71%), Gaps = 5/134 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V + K PNPVD VG R+R+RR++LG+SQEKLG+ LG+TFQQ+QKYEKG NR+GASRL Sbjct: 12 VMSAKTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQ 71 Query: 62 ISEVLESPISFFFDVSPT--VCSDISSEENN---VMDFISTPDGLQLNRYFIQIDDVKVR 116 I+++L+ P+SF F+ P+ V D E + V DF++T +GL L R F +I D K+R Sbjct: 72 IADILQVPVSFLFEGGPSSNVILDGLGEAPSPAYVSDFLATSEGLALTRAFTRITDAKLR 131 Query: 117 QKIIELVRSIVSSE 130 + I++LV I +++ Sbjct: 132 RSIVDLVEQIANTQ 145 >gi|222087623|ref|YP_002546160.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725071|gb|ACM28227.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 152 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 65/134 (48%), Positives = 100/134 (74%), Gaps = 7/134 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K+PNP+D VG R+R+RR++LGMSQE+L + +G+TFQQVQKYEKG NR+GASRLQ I+ Sbjct: 2 SAKVPNPIDAYVGSRVRMRRLMLGMSQERLADQIGVTFQQVQKYEKGTNRIGASRLQAIA 61 Query: 64 EVLESPISFFF--DVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 VL P++FFF D S + +D IS E ++ DF+++ +GL LN+ F++I+D VRQ Sbjct: 62 SVLAVPVAFFFQQDNSQPLATDGLGAISGLE-DLSDFLTSKEGLSLNKAFMKINDPSVRQ 120 Query: 118 KIIELVRSIVSSEK 131 ++ L++S+ ++ + Sbjct: 121 SVLMLIKSLANTAE 134 >gi|241258713|ref|YP_002978597.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863183|gb|ACS60846.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 152 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/138 (49%), Positives = 96/138 (69%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K N +D VG RIR+RR +LGMSQE+LGE +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTANAIDSYVGARIRMRRQLLGMSQERLGEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFF---DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL++ SFFF + P D+S+ V +F+ T +GL LNR F++I D +R+ Sbjct: 62 EVLQTSPSFFFEQENSEPLTLQGLDLSANMEPVAEFLRTKEGLVLNRAFLKIADSNIRET 121 Query: 119 IIELVRSIVSSEKKYRTI 136 +I LV+++ +E + T+ Sbjct: 122 VIALVKAMAQAESRGVTL 139 >gi|83945000|ref|ZP_00957366.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] gi|83851782|gb|EAP89637.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] Length = 144 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 71/128 (55%), Positives = 93/128 (72%), Gaps = 4/128 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + PN VD +VG RIRLRR +L +SQEKLGE LG+TFQQVQKYE+G NRVGA RL Sbjct: 1 MTANPRGPNAVDRHVGSRIRLRRQLLNLSQEKLGEELGVTFQQVQKYERGTNRVGAGRLW 60 Query: 61 HISEVLESPISFFFD-VSPTVCSDISSEENN---VMDFISTPDGLQLNRYFIQIDDVKVR 116 ++++VL+ P+SFF+D V+ TV SE + V DFI + DG+ L + F +I D KVR Sbjct: 61 NLAKVLDVPVSFFYDGVAETVGQPGFSEGDQTPIVDDFIQSADGVALAQAFARIKDSKVR 120 Query: 117 QKIIELVR 124 ++I+ELVR Sbjct: 121 RRILELVR 128 >gi|114571577|ref|YP_758257.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114342039|gb|ABI67319.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 140 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 67/131 (51%), Positives = 91/131 (69%), Gaps = 4/131 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + PNP+DI+VG RIRLRR +L MSQE+LG+ LG+TFQQVQKYE+G NRVGASRL +S Sbjct: 5 NPRGPNPIDIHVGSRIRLRRQLLKMSQERLGDDLGVTFQQVQKYERGANRVGASRLYRMS 64 Query: 64 EVLESPISFFFDVSPTVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 VLE P+ FFF+ + E++ V DFI + DG+ L F +I D KVR+++ Sbjct: 65 RVLEVPVQFFFEGMGERSTMTGMAEDDQTPIVYDFIRSADGVSLAESFSRIKDAKVRKRV 124 Query: 120 IELVRSIVSSE 130 +ELVR++ + Sbjct: 125 LELVRTLADED 135 >gi|227820124|ref|YP_002824095.1| transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339123|gb|ACP23342.1| probable transcriptional regulator protein [Sinorhizobium fredii NGR234] Length = 148 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/132 (49%), Positives = 91/132 (68%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK P +DI+VG RIRLRR+ L SQ KLGE L ++FQQVQKYEKG+NRVGASRLQ + Sbjct: 6 NKKEPRAIDIHVGNRIRLRRLALDWSQTKLGEALDVSFQQVQKYEKGLNRVGASRLQRAA 65 Query: 64 EVLESPISFFFDVSPTVC-----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL +S+FF+ P S + + ++ F++T +G+ LNR F ++ D +VR+K Sbjct: 66 EVLSVSVSYFFEGGPETSNGGEQSAAVTSSDEMLQFLATEEGVALNRAFARLSDPQVRRK 125 Query: 119 IIELVRSIVSSE 130 I+ LV+++ SE Sbjct: 126 IVALVKALAPSE 137 >gi|18071257|ref|NP_542325.1| hypothetical protein PBC5p65 [Sinorhizobium phage PBC5] gi|17940363|gb|AAL49607.1|AF448724_44 unknown [Sinorhizobium phage PBC5] Length = 135 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 68/119 (57%), Positives = 81/119 (68%), Gaps = 2/119 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PNP+D VG RIRLRR I+GMSQE L LGITFQQVQKYEKG NRVGASRLQ ISE Sbjct: 10 KKPNPIDTQVGARIRLRRNIIGMSQETLAAHLGITFQQVQKYEKGANRVGASRLQAISEA 69 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L+ S+FFD +E VM FI++ +G+ LNR F +I D R KI++LV+ Sbjct: 70 LKVAPSYFFDKPEGATEANGGDE--VMSFIASSEGIALNRAFARIQDSATRHKIVDLVK 126 >gi|190894495|ref|YP_001984788.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700156|gb|ACE94238.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 152 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/138 (50%), Positives = 91/138 (65%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDSYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFF---DVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL + SFFF D P + + + V +F+ T +GL LNR F++I D +R Sbjct: 62 EVLHTSPSFFFEQGDSEPVAAPGLGGRDRTDPVAEFLQTKEGLVLNRAFLKIADPHIRAS 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV ++ +E + TI Sbjct: 122 IIALVTAMGQAESRGLTI 139 >gi|241205900|ref|YP_002976996.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859790|gb|ACS57457.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 141 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 63/122 (51%), Positives = 83/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQNGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L PI FFF+ I N + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPIGFFFENGG--AGPIDGATNELNSFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|209552341|ref|YP_002284256.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539453|gb|ACI59385.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 152 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/138 (48%), Positives = 94/138 (68%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR+RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDGYVGARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFF---DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +VL + SFFF + P D+ + + V +F+ T +GL LNR F++I D +R+ Sbjct: 62 DVLHTSPSFFFEQENSEPLTLQGLDLPANSDPVAEFLQTKEGLVLNRAFLKIADRNIRET 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV+++ +E T+ Sbjct: 122 IIALVKAMAQAESSGVTL 139 >gi|218672917|ref|ZP_03522586.1| probable transcriptional regulator protein [Rhizobium etli GR56] Length = 141 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 64/124 (51%), Positives = 86/124 (69%), Gaps = 2/124 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ + I E + + F+S+ +GL LN+ FI I+D +RQK++ L RS Sbjct: 64 LRVPVGFFFENGGS--GPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALARS 121 Query: 126 IVSS 129 + S Sbjct: 122 LAVS 125 >gi|218681409|ref|ZP_03529306.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 141 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/122 (51%), Positives = 85/122 (69%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGANRIGASRLQKISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L PI FFF+ + I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPIGFFFENGGS--GPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|86358808|ref|YP_470700.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282910|gb|ABC91973.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 141 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 62/124 (50%), Positives = 87/124 (70%), Gaps = 2/124 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ + I E + + F+S+ +GL LN+ FI I+D VRQK++ L ++ Sbjct: 64 LRVPVGFFFENGGS--GPIEGETSELNKFLSSKEGLALNKAFIAIEDPNVRQKLVALAKT 121 Query: 126 IVSS 129 + ++ Sbjct: 122 LATA 125 >gi|85715705|ref|ZP_01046684.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85697358|gb|EAQ35237.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 149 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/130 (52%), Positives = 89/130 (68%), Gaps = 5/130 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN VD +VG R+R+RR++LGMSQE+LGE LG+TFQQVQKYEKG NRVGASR++ ISE+ Sbjct: 19 KSPNYVDKHVGSRVRMRRIMLGMSQEQLGEALGLTFQQVQKYEKGTNRVGASRIKQISEI 78 Query: 66 LESPISFFFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L P+SF F+ SPT S ++V F++T GL L R F +I D K+R+ ++ Sbjct: 79 LGVPVSFLFEGSPTRISATEDPGQVPSPDSVSSFVATTQGLALIRAFTRITDPKLRRSVV 138 Query: 121 ELVRSIVSSE 130 LV I E Sbjct: 139 NLVEQIACRE 148 >gi|209550535|ref|YP_002282452.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536291|gb|ACI56226.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 141 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/122 (51%), Positives = 85/122 (69%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L PI FFF+ + I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPIGFFFENGGS--GPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|116253382|ref|YP_769220.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|15007265|gb|AAK77322.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae] gi|115258030|emb|CAK09128.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 141 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/122 (51%), Positives = 86/122 (70%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQNGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ + D ++ E N F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPVGFFFENGGSGPIDGATNELN--SFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|116249754|ref|YP_765592.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254402|emb|CAK04035.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 152 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K N +D VG RIR+RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTANAIDSYVGARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFF---DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL + SFFF + P D+ + + V +F+ T +GL LNR F++I D +R+ Sbjct: 62 EVLHTSPSFFFEQENSEPLTLQGLDLPANMDPVAEFLRTKEGLVLNRAFLKIADSNIRET 121 Query: 119 IIELVRSIVSSEKKYRTI 136 +I LV+++ +E + T+ Sbjct: 122 VIALVKAMAQAESRGLTL 139 >gi|218458068|ref|ZP_03498159.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 127 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 62/122 (50%), Positives = 84/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPVGFFFENGG--AGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|144899566|emb|CAM76430.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 161 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 65/135 (48%), Positives = 92/135 (68%), Gaps = 12/135 (8%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+G NRVGASRL +S VL+ Sbjct: 26 PNPIDVHVGSRVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGANRVGASRLFDLSRVLD 85 Query: 68 SPISFFFD--------VSPTVCSDISSEENNVMDFISTP----DGLQLNRYFIQIDDVKV 115 P+SFFFD SP + + +++ E F P + L+L R + +I D +V Sbjct: 86 VPVSFFFDDMNDELKAQSPALIAGMTALEEPPAHFEHDPLAKRETLELVRAYYRIADPQV 145 Query: 116 RQKIIELVRSIVSSE 130 R+++ EL +++ S+ Sbjct: 146 RKRVYELAKALADSD 160 >gi|218670209|ref|ZP_03519880.1| probable transcriptional regulator protein [Rhizobium etli GR56] Length = 152 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 68/137 (49%), Positives = 92/137 (67%), Gaps = 5/137 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDSYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFF---DVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL + SFFF D P + ++ V +F+ T +GL LNR F++I D ++R+ Sbjct: 62 EVLHTSPSFFFEQGDSQPLAVRGLDGPDHADPVAEFLRTKEGLVLNRAFLKIADPEIRES 121 Query: 119 IIELVRSIVSSEKKYRT 135 II LV ++ +E + T Sbjct: 122 IIALVTAMGQAESRGLT 138 >gi|190893033|ref|YP_001979575.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|218517003|ref|ZP_03513843.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] gi|190698312|gb|ACE92397.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 141 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 62/122 (50%), Positives = 85/122 (69%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ + I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPVGFFFENGGS--GPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|254502751|ref|ZP_05114902.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438822|gb|EEE45501.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 112 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 62/112 (55%), Positives = 86/112 (76%), Gaps = 5/112 (4%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 M+LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ VL+ P+SFFF+ +P + Sbjct: 1 MMLGMSQEKLGEALGITFQQIQKYEKGTNRIGASRLQHIATVLKVPVSFFFEDAPGTPEE 60 Query: 84 I-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + V+DF+S+ +GL LN+ F++I+D KVR++I++LVRS+ E Sbjct: 61 AEGFGETQPTSYVVDFLSSSEGLSLNKAFVRIEDPKVRRRIVDLVRSLAGDE 112 >gi|190014814|ref|YP_001967578.1| orf_Bo182 [Agrobacterium tumefaciens] gi|71849617|gb|AAZ50565.1| orf_Bo182 [Agrobacterium tumefaciens] Length = 140 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/132 (49%), Positives = 89/132 (67%), Gaps = 5/132 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG RIRL+R +GMSQ+ L LG+TFQQVQKYEKG NRVGASRL I+ Sbjct: 6 KAPNAIDVEVGARIRLKRKPIGMSQQSLAGKLGVTFQQVQKYEKGTNRVGASRLSQIATA 65 Query: 66 LESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+S+FFD + D I+ E + V F+S+ +G LNR F+QI VRQK++ Sbjct: 66 LDVPMSYFFDGNQGERQDDDNPHITRETDEVALFLSSTEGFNLNRAFMQIPSAAVRQKVV 125 Query: 121 ELVRSIVSSEKK 132 LV+S+ +E++ Sbjct: 126 LLVKSVARAEEE 137 >gi|209966238|ref|YP_002299153.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209959704|gb|ACJ00341.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 149 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 61/125 (48%), Positives = 90/125 (72%), Gaps = 3/125 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ Sbjct: 20 PNPVDVHVGSRVRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLYDLSRVLD 79 Query: 68 SPISFFFDVSPTVCSDISSEENNV---MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+SFFFD P+ + ++E+ D ++ + L+L R + +I + VR++I EL + Sbjct: 80 VPVSFFFDDMPSDDAPRTAEQAQADGEPDPMAKRETLELVRAYYRITEPAVRKRIFELTK 139 Query: 125 SIVSS 129 ++ + Sbjct: 140 AVAHA 144 >gi|144900187|emb|CAM77051.1| transcriptional regulators [Magnetospirillum gryphiswaldense MSR-1] Length = 161 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/128 (49%), Positives = 92/128 (71%), Gaps = 9/128 (7%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+G NRVGASRL +S VL+ Sbjct: 27 PNPIDVHVGARVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGANRVGASRLFDLSRVLD 86 Query: 68 SPISFFFD--------VSPTVCSDISSEENNV-MDFISTPDGLQLNRYFIQIDDVKVRQK 118 P+SFFFD +SP + S ++ E + D ++ + L+L R + +I D VR++ Sbjct: 87 VPVSFFFDDMSEEVEALSPRLISGLAEEPASFETDPMTKRETLELVRAYYRITDPHVRKR 146 Query: 119 IIELVRSI 126 +++L +++ Sbjct: 147 VLDLAKAL 154 >gi|16124307|ref|NP_418871.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|13421145|gb|AAK22039.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] Length = 142 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/129 (49%), Positives = 93/129 (72%), Gaps = 2/129 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++ PNPVD++VG RIR+RR ILG+SQE+L E LG+TFQQVQKYE+G NRV AS+L I+ Sbjct: 7 TERHPNPVDLHVGARIRMRRRILGVSQERLAEDLGLTFQQVQKYERGANRVSASKLYEIA 66 Query: 64 EVLESPISFFFD-VSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L+SP+ +FF+ + T ++ E V DF+ TP+GL+L F ++ KVR++I+E Sbjct: 67 RSLQSPVDYFFEGLEDTTGGGMAERGEPFVHDFLMTPEGLELATLFPKVSRQKVRRRILE 126 Query: 122 LVRSIVSSE 130 LVRS+ + + Sbjct: 127 LVRSMAAED 135 >gi|227819384|ref|YP_002823355.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338383|gb|ACP22602.1| probable transcriptional regulator protein, XRE familiy [Sinorhizobium fredii NGR234] Length = 150 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/130 (50%), Positives = 91/130 (70%), Gaps = 6/130 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D VG R+R+RR+++GMSQEKL + LGITFQQVQKYEKG NR+GASRLQ I++ Sbjct: 2 KKNPNPIDTFVGSRVRMRRLMVGMSQEKLADGLGITFQQVQKYEKGTNRIGASRLQAIAD 61 Query: 65 VLESPISFFFD-----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L SFFF S +D+ E + + F+++ +G+ LNR F++I D +R+KI Sbjct: 62 ILGVHPSFFFQQDEKAQSRETAADV-HESHEISSFVASKEGIALNRAFLKIVDPVLRKKI 120 Query: 120 IELVRSIVSS 129 I LV ++ S Sbjct: 121 IALVAAMAHS 130 >gi|221232988|ref|YP_002515424.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] gi|220962160|gb|ACL93516.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] Length = 144 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/129 (49%), Positives = 93/129 (72%), Gaps = 2/129 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++ PNPVD++VG RIR+RR ILG+SQE+L E LG+TFQQVQKYE+G NRV AS+L I+ Sbjct: 9 TERHPNPVDLHVGARIRMRRRILGVSQERLAEDLGLTFQQVQKYERGANRVSASKLYEIA 68 Query: 64 EVLESPISFFFD-VSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L+SP+ +FF+ + T ++ E V DF+ TP+GL+L F ++ KVR++I+E Sbjct: 69 RSLQSPVDYFFEGLEDTTGGGMAERGEPFVHDFLMTPEGLELATLFPKVSRQKVRRRILE 128 Query: 122 LVRSIVSSE 130 LVRS+ + + Sbjct: 129 LVRSMAAED 137 >gi|222080150|ref|YP_002540013.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738795|gb|ACM39574.1| transcriptional regulator [Agrobacterium vitis S4] Length = 146 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 66/123 (53%), Positives = 86/123 (69%), Gaps = 2/123 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+PNPVDI VG+RI+ RR ILGMSQ KL E LG+TFQQVQKY+KG NRVGASRLQ+++ + Sbjct: 12 KVPNPVDIEVGERIKARRRILGMSQGKLAEALGVTFQQVQKYKKGKNRVGASRLQNVATI 71 Query: 66 LESPISFFF-DVSPTVCSDISSEENN-VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 P S+FF D S DI+S + F++ +GL LNR F I VR++++ LV Sbjct: 72 FGVPFSYFFPDQSSGTEGDITSNPGKEITAFLANNEGLDLNRAFALISSPLVRKRVVGLV 131 Query: 124 RSI 126 +SI Sbjct: 132 KSI 134 >gi|150376667|ref|YP_001313263.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031214|gb|ABR63330.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 152 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 67/138 (48%), Positives = 93/138 (67%), Gaps = 7/138 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+D VG R+R+RR+++G+SQEKL + LGITFQQVQKYEKG NR+GASRLQ I+ Sbjct: 2 NKKDPNPIDAFVGSRVRMRRLMIGLSQEKLADGLGITFQQVQKYEKGTNRIGASRLQAIA 61 Query: 64 EVLESPISFFFD------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++L SFFF S DI E + F+++ +G+ LNR F++I D +R+ Sbjct: 62 DILGVHPSFFFQQEEGSTQSGRPSGDI-HESQEISSFVASKEGIALNRAFLKIADPVLRK 120 Query: 118 KIIELVRSIVSSEKKYRT 135 KII LV ++ S + +T Sbjct: 121 KIISLVAAMAQSPESDQT 138 >gi|295687480|ref|YP_003591173.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295429383|gb|ADG08555.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 140 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 64/132 (48%), Positives = 93/132 (70%), Gaps = 1/132 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + G ++ PNPVD++VG RIR+RR ILG+SQE+L E LG+TFQQ+QKYE+G NRV AS+L Sbjct: 4 LSGAERHPNPVDLHVGARIRMRRKILGVSQERLAEDLGLTFQQIQKYERGANRVSASKLY 63 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I++ L++ + +FF+ T +S E V DF+ T +GL+L F +I KVR++I Sbjct: 64 EIAKSLQASVGYFFEGLETTVDGVSEPGEPFVHDFLMTSEGLELAAQFPRITRSKVRRRI 123 Query: 120 IELVRSIVSSEK 131 +ELVRS+ E+ Sbjct: 124 LELVRSMAEEEE 135 >gi|16264444|ref|NP_437236.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|307306783|ref|ZP_07586524.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307320821|ref|ZP_07600231.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15140581|emb|CAC49096.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|306893531|gb|EFN24307.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306902074|gb|EFN32672.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 152 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 64/132 (48%), Positives = 91/132 (68%), Gaps = 7/132 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+D VG R+R+RR+++G+SQEKL + LGITFQQVQKYEKG NR+GASRLQ I+ Sbjct: 2 NKKDPNPIDAFVGSRVRMRRLMIGLSQEKLADGLGITFQQVQKYEKGTNRIGASRLQAIA 61 Query: 64 EVLESPISFFFD------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++L SFFF S +D+ E + F+++ +G+ LNR F++I D +R+ Sbjct: 62 DILGVHPSFFFQQDEGSVHSGKPAADV-HESQEISSFVASKEGIALNRAFLKITDPVLRK 120 Query: 118 KIIELVRSIVSS 129 KII LV ++ + Sbjct: 121 KIISLVAAMAQT 132 >gi|167643999|ref|YP_001681662.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167346429|gb|ABZ69164.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 144 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/130 (50%), Positives = 92/130 (70%), Gaps = 4/130 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V ++ PNPVD++VG RIR+RR ILG+SQE+L + LG+TFQQVQKYE+G NRV AS+L Sbjct: 5 VDQERHPNPVDLHVGARIRMRRKILGVSQERLADDLGLTFQQVQKYERGANRVSASKLYE 64 Query: 62 ISEVLESPISFFFD--VSPTVCSDIS--SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I++ L+S +S+FF+ PT S E V DF+ TP+GL+L F +I +VR+ Sbjct: 65 IAKSLQSSVSYFFEGLADPTDLEGFSENGSEQFVHDFLMTPEGLELAALFPRIGKSRVRR 124 Query: 118 KIIELVRSIV 127 +I++LVRS+ Sbjct: 125 RILDLVRSMA 134 >gi|167644800|ref|YP_001682463.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347230|gb|ABZ69965.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 145 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 60/137 (43%), Positives = 93/137 (67%), Gaps = 12/137 (8%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG R+R+RR +LG+SQE+L + LG+TFQQVQKYE+G NRV AS+L I++ L+ Sbjct: 10 PNPVDLHVGGRVRMRRKLLGVSQEQLADSLGLTFQQVQKYERGANRVSASKLYEIAKTLQ 69 Query: 68 SPISFFFDVSPTVCSDISSEENN---------VMDFISTPDGLQLNRYFIQIDDVKVRQK 118 P+SFFFD + + EN+ V +F++TP+GL+L F +I +VR++ Sbjct: 70 VPVSFFFD---GLADPMDGSENDEIGQQAERIVQEFLTTPEGLELAEVFPKIGRGRVRRQ 126 Query: 119 IIELVRSIVSSEKKYRT 135 +++LVR++ + T Sbjct: 127 VLDLVRAMAEEAARTET 143 >gi|167621874|ref|YP_001676659.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167351615|gb|ABZ74345.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 140 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 88/129 (68%), Gaps = 3/129 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +PNPVD++VG R+R+RR +LGMSQE L LGI+FQQ+QKYE+G NRV AS+L Sbjct: 5 IAPDHLPNPVDLHVGARVRVRRKVLGMSQEALANALGISFQQIQKYERGTNRVSASKLYD 64 Query: 62 ISEVLESPISFFFDVSPTVC-SDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+ L +P+S+FF+ C D SS+ E +V F++T +GL+L F +I VR+ Sbjct: 65 IARTLGAPVSYFFEGLADPCDPDASSDPTEASVQQFLATSEGLELAAIFPKIQRAAVRRH 124 Query: 119 IIELVRSIV 127 +++LVRS+ Sbjct: 125 VLQLVRSMA 133 >gi|220920276|ref|YP_002495577.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944882|gb|ACL55274.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 137 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 59/127 (46%), Positives = 89/127 (70%), Gaps = 5/127 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R+RR+++G+SQEKLG+ LG+TFQQ+QKYEKG NR+ ASRLQ I+E Sbjct: 2 KKAPDPIDRHVGHRVRVRRLLVGVSQEKLGDALGVTFQQIQKYEKGANRISASRLQQIAE 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVM-----DFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L P+ FF++ +P + + E V D T LQL R F ++DD +VR+++ Sbjct: 62 MLGVPVGFFYEGAPRPENWLDEEHVEVARQPGSDLFWTSQDLQLVRAFQRVDDPQVRRRL 121 Query: 120 IELVRSI 126 + LV ++ Sbjct: 122 VALVEAL 128 >gi|288959693|ref|YP_003450034.1| HTH-type transcriptional regulator [Azospirillum sp. B510] gi|288912001|dbj|BAI73490.1| HTH-type transcriptional regulator [Azospirillum sp. B510] Length = 164 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 13/130 (10%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+D++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ Sbjct: 23 PNPIDVHVGSRVRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVLD 82 Query: 68 SPISFFFDVSPTVCSDI---------SSEENNVMDFISTP----DGLQLNRYFIQIDDVK 114 P+SFFFD P + +S+E + + P + L+L R + +I+D Sbjct: 83 VPVSFFFDDMPAEAAAARVEDDDEAGASDERSANTYEPDPMAKRETLELVRAYYKINDPS 142 Query: 115 VRQKIIELVR 124 VR+++ EL + Sbjct: 143 VRKRLFELTK 152 >gi|295688227|ref|YP_003591920.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430130|gb|ADG09302.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 144 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 58/131 (44%), Positives = 94/131 (71%), Gaps = 6/131 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG R+R+RR ++G+SQE+L + LG+TFQQVQKYE+G NRV AS+L I++ L+ Sbjct: 10 PNPVDLHVGGRVRMRRKLMGVSQEQLADSLGLTFQQVQKYERGANRVSASKLYDIAKTLQ 69 Query: 68 SPISFFFD--VSPTVCSDISS----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P+SFFF+ P ++I + E V +F++TP+GL+L F +I +VR+++++ Sbjct: 70 VPVSFFFEGLADPMSGAEIDATAQHAEKVVQEFLTTPEGLELAEVFPRIGRGRVRRQVLD 129 Query: 122 LVRSIVSSEKK 132 LVR++ ++ Sbjct: 130 LVRAMADEAQR 140 >gi|144900588|emb|CAM77452.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 160 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/135 (48%), Positives = 86/135 (63%), Gaps = 15/135 (11%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+G NRVGASRL +S VL+ Sbjct: 25 PNPIDVHVGNRVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGANRVGASRLYDLSRVLD 84 Query: 68 SPISFFFD--------VSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P+S+FFD SP D E ++ T L+L R + +I D V Sbjct: 85 VPVSYFFDDMNDETMAASPRHMVRATEDPPESEEAILAQRET---LELVRAYTRIKDPNV 141 Query: 116 RQKIIELVRSIVSSE 130 R+++ EL R++ E Sbjct: 142 RRQVQELARTLAVPE 156 >gi|227819239|ref|YP_002823210.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338238|gb|ACP22457.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 149 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 58/131 (44%), Positives = 93/131 (70%), Gaps = 2/131 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 ++ P+P+D +VG++IR++R++L MSQ +L + LG+T+QQVQKYE G RV ASRLQ I+ Sbjct: 8 RRRPDPIDSHVGQKIRMQRLLLHMSQTELAKALGVTYQQVQKYENGRTRVSASRLQAIAN 67 Query: 65 VLESPISFFFDVSPTVCSDIS--SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 VLE P++FFF+ S + SD + + + ++F+S+P GL LNR F +I DV+VR+ + L Sbjct: 68 VLEVPLTFFFESSASDHSDDAGLAASRSTVEFVSSPMGLALNRAFSRIADVRVRRSFLGL 127 Query: 123 VRSIVSSEKKY 133 V+ + + + Sbjct: 128 VQRLAEDDGTH 138 >gi|16127394|ref|NP_421958.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221236203|ref|YP_002518640.1| transcriptional regulator [Caulobacter crescentus NA1000] gi|13424834|gb|AAK25126.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220965376|gb|ACL96732.1| hypothetical transcriptional regulatory protein [Caulobacter crescentus NA1000] Length = 156 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 90/126 (71%), Gaps = 6/126 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG R+R+RR +LG+SQE+L + LG+TFQQVQKYE+G NRV AS+L I++ L+ Sbjct: 23 PNPVDLHVGGRVRMRRKLLGVSQEQLADSLGLTFQQVQKYERGANRVSASKLYEIAKTLQ 82 Query: 68 SPISFFFD--VSPTVCSDISS----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P+SFFFD P ++ E V +F++TP+GL+L F +I +VR+++++ Sbjct: 83 VPVSFFFDGLADPMNGAEADDAGLHAEKVVQEFLTTPEGLELAEVFPRIARGRVRRQVLD 142 Query: 122 LVRSIV 127 LVR++ Sbjct: 143 LVRAMA 148 >gi|296532209|ref|ZP_06894960.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296267465|gb|EFH13339.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 149 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 60/131 (45%), Positives = 86/131 (65%), Gaps = 11/131 (8%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+GVNR+GASRL ++ VL+ Sbjct: 16 PSPIDVHVGSRVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGVNRIGASRLFDLARVLD 75 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDG-----------LQLNRYFIQIDDVKVR 116 PI FFFD P ++ + F +G L+L R + +I + VR Sbjct: 76 VPIGFFFDDMPDAMGGQTALRARIGGFAEQQEGFEDDTLHKRETLELVRAYYRITEPSVR 135 Query: 117 QKIIELVRSIV 127 +++ EL++S+ Sbjct: 136 KRVFELIKSLA 146 >gi|167644301|ref|YP_001681964.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167346731|gb|ABZ69466.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 171 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/135 (45%), Positives = 95/135 (70%), Gaps = 5/135 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + PN VD++VG R+R+RR +LG+SQE L + LG+TFQQVQKYE+G NRV AS+L I++ Sbjct: 36 RTPNVVDLHVGGRVRMRRKMLGISQEHLADALGLTFQQVQKYERGANRVSASKLYEIAKT 95 Query: 66 LESPISFFFD--VSP-TVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+S+FF+ P T D + E N + DF++TP+GL+L F +I +VR++I+ Sbjct: 96 LQVPVSYFFEGLADPVTDEGDDAGEAANRVITDFLNTPEGLELAAIFPKIGKGRVRRQIL 155 Query: 121 ELVRSIVSSEKKYRT 135 +LVR++ E + ++ Sbjct: 156 DLVRAMADDEGQQKS 170 >gi|83313567|ref|YP_423831.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948408|dbj|BAE53272.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 164 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 62/135 (45%), Positives = 90/135 (66%), Gaps = 13/135 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PNPVDI+VG R+RLRR ++GMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL Sbjct: 24 LPNPVDIHVGARVRLRRTLMGMSQEKLGESIGLTFQQVQKYERGANRIGASRLFDLSRVL 83 Query: 67 ESPISFFF--------DVSPTVCSDISSEENN-----VMDFISTPDGLQLNRYFIQIDDV 113 + P+SFFF D SP + +S N D ++ + L+L R + I D Sbjct: 84 DVPVSFFFDDMAETVQDQSPVAVARGTSGLNEEPASFEADPMTKRETLELVRAYYSITDP 143 Query: 114 KVRQKIIELVRSIVS 128 +VR+++ +L +++ + Sbjct: 144 QVRRRVYDLAKALAA 158 >gi|118590494|ref|ZP_01547896.1| probable transcriptional regulator protein [Stappia aggregata IAM 12614] gi|118436957|gb|EAV43596.1| probable transcriptional regulator protein [Stappia aggregata IAM 12614] Length = 108 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 58/108 (53%), Positives = 82/108 (75%), Gaps = 5/108 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI--- 84 MSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ VL+ P+SFFF+ +P + Sbjct: 1 MSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIATVLKVPVSFFFEDAPGTPDEAEGF 60 Query: 85 --SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + V+DF+S+ +GL LN+ F++I+D KVR++I++LVRS+ + Sbjct: 61 GETQPTSYVVDFLSSSEGLSLNKAFVRIEDPKVRRRIVDLVRSLAGDD 108 >gi|170741362|ref|YP_001770017.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168195636|gb|ACA17583.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 142 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 56/127 (44%), Positives = 88/127 (69%), Gaps = 5/127 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R+RR+++G+SQEKLG+ LG+TFQQ+QKYEKG NR+ ASRLQ I+E Sbjct: 6 KKAPDPIDRHVGHRVRVRRLLMGVSQEKLGDALGVTFQQIQKYEKGANRISASRLQQIAE 65 Query: 65 VLESPISFFFDVSPTVCSDISSEENNV-----MDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L P+ FF++ +P + E + +D T LQL R F +++D +R+++ Sbjct: 66 MLGVPVGFFYEGAPRSENGHDEERGDAARAPSVDLFWTSQDLQLVRAFQRVNDPLLRRRV 125 Query: 120 IELVRSI 126 + LV ++ Sbjct: 126 VSLVEAM 132 >gi|148259042|ref|YP_001233169.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402169|ref|YP_004282250.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146400723|gb|ABQ29250.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325049030|dbj|BAJ79368.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 161 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 64/139 (46%), Positives = 93/139 (66%), Gaps = 16/139 (11%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D++VG RIRLRR +LGMSQEKLG+ LG+TFQQVQKYE+GVNRVGASRL IS VL+ Sbjct: 18 PSPIDVHVGSRIRLRRTLLGMSQEKLGDALGLTFQQVQKYERGVNRVGASRLFDISRVLD 77 Query: 68 SPISFFFDVSPTVCSDIS-----------SEEN-----NVMDFISTPDGLQLNRYFIQID 111 PISFFFD P +++ SE + D ++ + L+L R + +I Sbjct: 78 VPISFFFDDMPEGMNEMPMSGPRGRSNGLSEAQEPFGVGLDDHMTKRETLELVRAYYRIT 137 Query: 112 DVKVRQKIIELVRSIVSSE 130 + VR+++ +L++S+ ++ Sbjct: 138 EPTVRKRMFDLIKSLAPAD 156 >gi|83311180|ref|YP_421444.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946021|dbj|BAE50885.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 175 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 60/129 (46%), Positives = 84/129 (65%), Gaps = 11/129 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D++VG RIRLRR +LGMSQEKLGECLG+TFQQVQKYE+G NRVGASRL +S VL+ Sbjct: 43 NPIDVHVGARIRLRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLFDLSRVLDV 102 Query: 69 PISFFFD---VSPTVCSDISSEENNVMDFISTPDG--------LQLNRYFIQIDDVKVRQ 117 + +FF+ + S + NV + PD L+L R + I+D KVR Sbjct: 103 RVGYFFEEISATAQAASPVEVIRGNVTKSVDVPDDDPMTKRETLELVRAYFSINDPKVRD 162 Query: 118 KIIELVRSI 126 +++ + +++ Sbjct: 163 QVLSMAKAL 171 >gi|10954734|ref|NP_066669.1| hypothetical protein pRi1724_p089 [Agrobacterium rhizogenes] gi|8918734|dbj|BAA97799.1| riorf88 [Agrobacterium rhizogenes] gi|10567398|dbj|BAB16207.1| riorf88 [Agrobacterium rhizogenes] Length = 169 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 6/130 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P+D+ VG RIR RR +LGMSQ KL E LG+TFQQVQKYEKG NRVGASRL +++ V Sbjct: 33 KTPSPIDVEVGARIRTRRRVLGMSQAKLAEALGVTFQQVQKYEKGTNRVGASRLLNVANV 92 Query: 66 LESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L P+S FF+ S T S+ E + F+ + +G LN F +I + VR++++ Sbjct: 93 LGVPVSSFFN-SDTRDGQAERPRGSTAETELGAFVQSDEGRDLNGAFARIAEPAVRRQVV 151 Query: 121 ELVRSIVSSE 130 LV+++ ++E Sbjct: 152 SLVKAMAATE 161 >gi|163797135|ref|ZP_02191090.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] gi|159177651|gb|EDP62204.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] Length = 150 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 3/125 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG RIRLRR +LGMSQE+LG+ LG+TFQQVQKYE+G NRVGASRL ++ L+ Sbjct: 20 PNPVDVHVGVRIRLRRTLLGMSQERLGDALGLTFQQVQKYERGANRVGASRLFDLARALQ 79 Query: 68 SPISFFFD--VSPTVCSDI-SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+ FFFD TV + + D + + ++L R F +I D R+++ EL R Sbjct: 80 VPVGFFFDDLADGTVEGKVPPASATPADDPMQQRETIELVRAFYRIPDPTARRRLYELTR 139 Query: 125 SIVSS 129 SI + Sbjct: 140 SIADA 144 >gi|328545923|ref|YP_004306032.1| transcriptional regulator protein [polymorphum gilvum SL003B-26A1] gi|326415663|gb|ADZ72726.1| Probable transcriptional regulator protein [Polymorphum gilvum SL003B-26A1] Length = 109 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 55/108 (50%), Positives = 82/108 (75%), Gaps = 5/108 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI--- 84 MSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ +L+ P++FFF+ +P + Sbjct: 1 MSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIATILKVPVAFFFEDAPGSPEEAEGF 60 Query: 85 --SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + V+DF+S+ +GL LN+ F++I+D KVR++I++LVR++ + Sbjct: 61 GEAQPTSYVVDFLSSSEGLSLNKAFVRIEDPKVRRRIVDLVRALAGDD 108 >gi|295688460|ref|YP_003592153.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430363|gb|ADG09535.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 132 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 9/131 (6%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+PVD++VG+R+R+RR LG SQ+ L + LG+TFQQVQKYE G NR+ AS+L + Sbjct: 5 KTPDPVDVHVGRRLRMRRKDLGYSQQALADALGLTFQQVQKYEGGANRISASKLHATAMF 64 Query: 66 LESPISFFF------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L++PI FFF + + T +D++ N + +F STP G +L R ++ I+ +R+ + Sbjct: 65 LKTPIGFFFEGLDDPEGADTTAADLA---NEMAEFWSTPGGPELARAYVAIESTGMRRHL 121 Query: 120 IELVRSIVSSE 130 +L ++I E Sbjct: 122 ADLAKAIADDE 132 >gi|258541402|ref|YP_003186835.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632480|dbj|BAH98455.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256635537|dbj|BAI01506.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256638592|dbj|BAI04554.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256641646|dbj|BAI07601.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256644701|dbj|BAI10649.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256647756|dbj|BAI13697.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256650809|dbj|BAI16743.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653800|dbj|BAI19727.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] Length = 164 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 22/148 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +D +VGKRIRLRR +LG+SQEKLGE LGITFQQ+QKYE+G NRVGASRL Sbjct: 13 MIQPHAAASAIDAHVGKRIRLRRTLLGLSQEKLGEALGITFQQIQKYERGANRVGASRLY 72 Query: 61 HISEVLESPISFFF-DVSPT------------------VCSDISSEENNVMDFIS---TP 98 HI+ VL+ PISFFF D+ P SD ++ D S T Sbjct: 73 HIACVLDVPISFFFDDMHPVGAVSNKHAQFSETRKSFGTTSDKNTPAAPTTDTKSVFKTQ 132 Query: 99 DGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + L+L R + I D ++R+KI+EL+ ++ Sbjct: 133 ETLELVRAYYSIPDTQMRRKILELMLTM 160 >gi|83595104|ref|YP_428856.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83578018|gb|ABC24569.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 210 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 58/133 (43%), Positives = 87/133 (65%), Gaps = 19/133 (14%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG R+RLRR +LG+SQEKLGE +G+TFQQVQKYE+G NR+GASRL + VL+ Sbjct: 67 PNPVDVHVGARVRLRRTLLGLSQEKLGEAIGLTFQQVQKYERGANRIGASRLWDLGRVLD 126 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTP--------------DGLQLNRYFIQIDDV 113 P+++FFD D S++ ++ M+ P + L+L R + +I D Sbjct: 127 VPMAYFFD-----EMDDSTQRHSPMNIAQHPGEPPVQGTDTMTRRETLELVRAYYRIGDP 181 Query: 114 KVRQKIIELVRSI 126 VR+++ EL +++ Sbjct: 182 GVRRRVFELTKTL 194 >gi|332716362|ref|YP_004443828.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063047|gb|ADY66737.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 146 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 60/128 (46%), Positives = 84/128 (65%), Gaps = 3/128 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+P+P+D++VG +IR+RR LGMSQ L LGITFQQVQKYEKG NRVGASRLQ I+ V Sbjct: 5 KLPSPIDVHVGTQIRMRRKSLGMSQSALAGRLGITFQQVQKYEKGANRVGASRLQAIASV 64 Query: 66 LESPI-SFFFDVSPTV--CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L + S F + +P V + N + F+++ +G LN+ F +I VR+ I+ L Sbjct: 65 LGVDVSSLFANATPDVGNANPALGTINAMQSFVASNEGFSLNQAFARIKSATVRKSIVAL 124 Query: 123 VRSIVSSE 130 V S+ ++E Sbjct: 125 VTSLAATE 132 >gi|315497219|ref|YP_004086023.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315415231|gb|ADU11872.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 139 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/124 (46%), Positives = 84/124 (67%), Gaps = 4/124 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG R+R+RR LGMSQE L E + +TFQQVQKYE+G NR+ AS+L IS L+ Sbjct: 11 PNPVDLHVGARVRMRRKFLGMSQEALAETISLTFQQVQKYERGSNRISASKLHEISRALK 70 Query: 68 SPISFFFD---VSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +P+++FF+ S V S E V F+ T +G++L F +I + K R++I+ELV Sbjct: 71 APVAYFFEGYGESEAVEGFSESQSEQFVHGFLMTTEGIELAEAFPRIKNAKHRRRILELV 130 Query: 124 RSIV 127 R++ Sbjct: 131 RALA 134 >gi|83311279|ref|YP_421543.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946120|dbj|BAE50984.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 201 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 11/129 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D++VG RIRLRR +LGMSQEKLGECLG+TFQQVQKYE+G NRVGASRL +S VL+ Sbjct: 69 NPIDVHVGARIRLRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLFDLSRVLDV 128 Query: 69 PISFFF-DVSPT--VCSDISSEENNVMDFISTPDG--------LQLNRYFIQIDDVKVRQ 117 + +FF ++S T S + NV I D L+L R + I D KVR Sbjct: 129 RVGYFFEEISSTAQAASPVEVIRGNVTKAIDVADDNPMTKRETLELVRAYFSISDPKVRD 188 Query: 118 KIIELVRSI 126 +++ + +++ Sbjct: 189 QVLSMAKAL 197 >gi|15891368|ref|NP_357040.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15159757|gb|AAK89825.1| transcriptional regulator, HTH family [Agrobacterium tumefaciens str. C58] Length = 145 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/128 (46%), Positives = 84/128 (65%), Gaps = 3/128 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+P+P+D++VG +IR+RR LGMSQ L LGITFQQVQKYEKG NRVGASRLQ I+ + Sbjct: 4 KLPSPIDVHVGTQIRMRRKSLGMSQSALAGRLGITFQQVQKYEKGANRVGASRLQAIASI 63 Query: 66 LESPI-SFFFDVSP--TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L + S F + +P + N + F+++ +G LN+ F +I V VR+ I+ L Sbjct: 64 LGVEVSSLFANATPDGGAANPALGTINAMQTFVASNEGFSLNQAFSRIKSVAVRRSIVAL 123 Query: 123 VRSIVSSE 130 V S+ +SE Sbjct: 124 VTSLAASE 131 >gi|329114990|ref|ZP_08243745.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] gi|326695433|gb|EGE47119.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] Length = 164 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 22/148 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +D +VGKRIRLRR +LG+SQEKLGE LGITFQQ+QKYE+G NRVGASRL Sbjct: 13 MIQPHAAASAIDAHVGKRIRLRRTLLGLSQEKLGEALGITFQQIQKYERGANRVGASRLY 72 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTP-------------------- 98 HI+ L+ PISFFFD S V S+ + + P Sbjct: 73 HIACALDVPISFFFDDMHSAEVVSNKQAHFSETRKSFGAPSDKNVSVAPTSDTKNIFKKQ 132 Query: 99 DGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + L+L R + I D ++R+KI+EL++++ Sbjct: 133 ETLELVRVYYSIPDAQMRRKILELMQTM 160 >gi|16520003|ref|NP_444123.1| transcriptional regulator (Cro/CI family) [Sinorhizobium fredii NGR234] gi|2496761|sp|P55681|Y4WC_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4wC gi|2182692|gb|AAB91910.1| transcriptional regulator (Cro/CI family) [Sinorhizobium fredii NGR234] Length = 143 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 13/137 (9%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 ++ PN VD +VG+RIR RR MSQ LGE +G+TFQQVQKYEKGVNRVGA RLQ IS+ Sbjct: 10 RRKPNAVDAHVGQRIRQRREWQNMSQTTLGEAIGVTFQQVQKYEKGVNRVGAGRLQQISK 69 Query: 65 VLESPISFFFDVSPTVCSDISSEENN----------VMDFISTPDGLQLNRYFIQIDDVK 114 L+ S+FF+ + I SEE + V++F+ + +G++L R F ++ D + Sbjct: 70 ALKVEPSYFFE---DTLNKIRSEERSASNQINIPPEVVEFVVSKEGIELIRAFSRVGDYR 126 Query: 115 VRQKIIELVRSIVSSEK 131 VR++I+ LV+S+ + E+ Sbjct: 127 VRRRIVMLVKSLGAHER 143 >gi|218678050|ref|ZP_03525947.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 125 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 59/111 (53%), Positives = 77/111 (69%), Gaps = 5/111 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDGYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFF---DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQ 109 EVL + SFFF + P D+ + + V +F+ T +GL LNR F++ Sbjct: 62 EVLHTSPSFFFEQENSEPLTLQGLDLPANTDPVAEFLRTKEGLVLNRAFLR 112 >gi|83311372|ref|YP_421636.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946213|dbj|BAE51077.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 155 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 64/128 (50%), Positives = 85/128 (66%), Gaps = 13/128 (10%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ Sbjct: 17 PNPVDVHVGGRMRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVLD 76 Query: 68 SPISFFFD--------VSPTVCSDIS---SEENNVM--DFISTPDGLQLNRYFIQIDDVK 114 P+S+FFD SP S SEE D ++ + L+L R + I D + Sbjct: 77 VPVSYFFDDMADGVQAQSPVNIIKGSVGLSEEPATFEADPMTKRETLELVRAYYNITDPQ 136 Query: 115 VRQKIIEL 122 VR+++ EL Sbjct: 137 VRKRVYEL 144 >gi|218512667|ref|ZP_03509507.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] Length = 108 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 55/102 (53%), Positives = 76/102 (74%), Gaps = 6/102 (5%) Query: 33 LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI------SS 86 L + LGITFQQ+QKYEKG NRVGASRLQ+IS +L P+SFFF+ +P S +S Sbjct: 2 LAKALGITFQQIQKYEKGTNRVGASRLQNISSILNVPVSFFFEDAPGEHSGAIGGMAEAS 61 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 N V+DF+S+ +GLQLNR F++I D KVR+K++ELV+++ + Sbjct: 62 SSNYVVDFLSSSEGLQLNRAFVKISDPKVRRKVVELVKALAA 103 >gi|16126908|ref|NP_421472.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235691|ref|YP_002518128.1| transcriptional regulator [Caulobacter crescentus NA1000] gi|13424258|gb|AAK24640.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964864|gb|ACL96220.1| transcriptional regulator [Caulobacter crescentus NA1000] Length = 153 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 3/128 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+PVDI+VG+R+R+RR LG SQ+ L + LG+TFQQVQKYE G NR+ AS+L + Sbjct: 26 KSPDPVDIHVGRRLRMRRKDLGYSQQALADALGLTFQQVQKYEGGSNRISASKLHGAAMF 85 Query: 66 LESPISFFFDV--SPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L++P++FFF+ P ++E N + F S P G L R F I+ V +R+ +++L Sbjct: 86 LKTPVAFFFEGLEDPEGVDGTAAELANEMASFWSLPGGPDLARAFSAIESVSMRKHLLDL 145 Query: 123 VRSIVSSE 130 R+I E Sbjct: 146 ARAIAGQE 153 >gi|162147196|ref|YP_001601657.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785773|emb|CAP55344.1| putative transcriptional Regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 174 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 59/144 (40%), Positives = 87/144 (60%), Gaps = 21/144 (14%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD++VG RIRLRR ++G+SQE+LG+ LG+TFQQVQKYE+G NRV ASRL +SEVL+ Sbjct: 31 PSPVDVHVGGRIRLRRTLMGLSQERLGDALGLTFQQVQKYERGTNRVSASRLYELSEVLD 90 Query: 68 SPISFFFD------VSPTVCSDISSEENNVMDFISTPDG---------------LQLNRY 106 P+SFFFD + I F P+G ++L R Sbjct: 91 VPVSFFFDGLDSGQAGSKATNAIPGFAQAQEAFGGAPEGAAPASEIALFSRREMIELVRI 150 Query: 107 FIQIDDVKVRQKIIELVRSIVSSE 130 + +I+D +R+++++L+R + E Sbjct: 151 YYRIEDPAMRRRVLDLIRMMAPPE 174 >gi|209544249|ref|YP_002276478.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531926|gb|ACI51863.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 174 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 59/144 (40%), Positives = 87/144 (60%), Gaps = 21/144 (14%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD++VG RIRLRR ++G+SQE+LG+ LG+TFQQVQKYE+G NRV ASRL +SEVL+ Sbjct: 31 PSPVDVHVGGRIRLRRTLMGLSQERLGDALGLTFQQVQKYERGTNRVSASRLYELSEVLD 90 Query: 68 SPISFFFD------VSPTVCSDISSEENNVMDFISTPDG---------------LQLNRY 106 P+SFFFD + I F P+G ++L R Sbjct: 91 VPVSFFFDGLDSGQAGSKATNAIPGFAQAQEAFGGAPEGAAPASEIALFSRRETIELVRI 150 Query: 107 FIQIDDVKVRQKIIELVRSIVSSE 130 + +I+D +R+++++L+R + E Sbjct: 151 YYRIEDPAMRRRVLDLIRMMAPPE 174 >gi|144897602|emb|CAM74466.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 149 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 54/125 (43%), Positives = 81/125 (64%), Gaps = 6/125 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D +VG R+RLRR ++G+SQ +L + +G+TFQQVQKYE G NR+ ASRL HISE L+ Sbjct: 20 PDPIDTHVGARLRLRRTLMGLSQTELAKSVGLTFQQVQKYESGANRISASRLYHISEALD 79 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTP----DGLQLNRYFIQIDDVKVRQKIIELV 123 P+SFFFD E+ V S P +GL++ R + +I D +R+ + +L Sbjct: 80 VPVSFFFDDMSRSSGKYGLHEDAVA--FSAPESSREGLEMMRNYHRITDEAIRRSVYDLT 137 Query: 124 RSIVS 128 +S+ + Sbjct: 138 KSLAA 142 >gi|222102467|ref|YP_002539506.1| transcriptional regulator [Agrobacterium vitis S4] gi|221739068|gb|ACM39801.1| transcriptional regulator [Agrobacterium vitis S4] Length = 138 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 56/126 (44%), Positives = 83/126 (65%), Gaps = 4/126 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + +D++VG RIRL+R++ GMSQ+ L E +G+TFQQVQKYE G NR+G+SRLQ ++ + Sbjct: 8 KASDVIDVHVGCRIRLQRVLKGMSQKALAEGVGVTFQQVQKYETGTNRIGSSRLQAVARI 67 Query: 66 LESPISFFFDVSPTVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P++FFF+ P S E + FI + +GL LN F +I D VR+K+I Sbjct: 68 LSVPVAFFFEDGPQSSSPSQLPEAGIGKEITRFIRSEEGLALNLAFTKIQDANVRRKVIG 127 Query: 122 LVRSIV 127 LV+++ Sbjct: 128 LVKTLA 133 >gi|218459687|ref|ZP_03499778.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 104 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 54/99 (54%), Positives = 74/99 (74%), Gaps = 6/99 (6%) Query: 36 CLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI------SSEEN 89 LGITFQQ+QKYEKG NRVGASRLQ+IS +L P+SFFF+ +P S +S N Sbjct: 1 SLGITFQQIQKYEKGTNRVGASRLQNISSILNVPVSFFFEDAPGEHSGAIGGMAETSSSN 60 Query: 90 NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 V+DF+S+ +GLQLNR F++I D KVR+K++ELV+++ + Sbjct: 61 YVVDFLSSSEGLQLNRAFVKISDPKVRRKVVELVKALAA 99 >gi|46201366|ref|ZP_00055177.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 137 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 59/132 (44%), Positives = 90/132 (68%), Gaps = 13/132 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI+VG R+RLRR ++GMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ P+ Sbjct: 1 MDIHVGGRVRLRRTLMGMSQEKLGESIGLTFQQVQKYERGANRIGASRLFDLSRVLDVPV 60 Query: 71 SFFF-DVSPTV-----------CSDISSEENNV-MDFISTPDGLQLNRYFIQIDDVKVRQ 117 SFFF D++ TV S +S E + D ++ + L+L R + I D +VR+ Sbjct: 61 SFFFDDMAETVQEQSPVAVSRGASGLSEEPASFEADPMTKRETLELVRAYYAIIDPQVRR 120 Query: 118 KIIELVRSIVSS 129 ++ +L +++ ++ Sbjct: 121 RVYDLAKALAAT 132 >gi|197105969|ref|YP_002131346.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479389|gb|ACG78917.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 143 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 54/120 (45%), Positives = 83/120 (69%), Gaps = 2/120 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD +VG RIR+RR +G+SQE+L E LGITFQQVQKYE+G NRV AS+L I++ L+ Sbjct: 23 PHPVDRHVGLRIRMRRKEIGVSQERLAEALGITFQQVQKYERGANRVSASKLWEIAQALK 82 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + +++F++ ++ N DF+ T +GL+L F +I +R+K++ELVR++ Sbjct: 83 TGVTYFYE--GLNDHELGDAGRNAQDFMLTGEGLELMSTFPRIAQPALRRKLVELVRAMA 140 >gi|83310845|ref|YP_421109.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945686|dbj|BAE50550.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 167 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 49/68 (72%), Positives = 60/68 (88%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ Sbjct: 29 PNPVDVHVGGRMRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVLD 88 Query: 68 SPISFFFD 75 PIS+FFD Sbjct: 89 VPISYFFD 96 >gi|218507453|ref|ZP_03505331.1| transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 111 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 53/100 (53%), Positives = 70/100 (70%), Gaps = 2/100 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 L P+ FFF+ + I E + + F+S+ +GL LN+ Sbjct: 64 LRVPVGFFFENGGS--GPIEGETSELNKFLSSKEGLALNK 101 >gi|23011267|ref|ZP_00051678.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 160 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/131 (45%), Positives = 86/131 (65%), Gaps = 13/131 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ P+ Sbjct: 3 IDVHVGGRMRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVLDVPV 62 Query: 71 SFFFD--------VSPTVCSDIS---SEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQ 117 S+FFD SP S SEE D ++ + L+L R + I D +VR+ Sbjct: 63 SYFFDDMADGVQAQSPVNIIKGSVGLSEEPATFEADPMTKRETLELVRAYYNITDPQVRK 122 Query: 118 KIIELVRSIVS 128 ++ EL +++ + Sbjct: 123 RVYELAKALAA 133 >gi|330991161|ref|ZP_08315114.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] gi|329761747|gb|EGG78238.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] Length = 158 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 28/146 (19%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NPVD++VG RIRLRR +LGMSQE+LG LG+TFQQVQKYE+G NRVGASRL ++ VL+ Sbjct: 10 NPVDVHVGNRIRLRRTLLGMSQERLGNALGLTFQQVQKYERGRNRVGASRLYDLACVLDV 69 Query: 69 PISFFFDVSP--------------------------TVCSDISSEENNVMD--FISTPDG 100 P++FFF P D+ N D S + Sbjct: 70 PVAFFFAGLPDPVGSMEPCPSGPEGVSEPAVPLGGSMAVGDMPPPATNTGDLALFSRRET 129 Query: 101 LQLNRYFIQIDDVKVRQKIIELVRSI 126 ++L R + I+D R+++++LVRS+ Sbjct: 130 IELVRAYYGIEDSSTRRRVLDLVRSM 155 >gi|296114432|ref|ZP_06833086.1| HTH-type transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295979193|gb|EFG85917.1| HTH-type transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 207 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 49/71 (69%), Positives = 59/71 (83%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD+ VG RIRLRR +LGMSQE+LG LG+TFQQVQKYE+G NRVGASRL ++ VL+ Sbjct: 9 PSPVDVYVGSRIRLRRTLLGMSQERLGTALGLTFQQVQKYERGANRVGASRLYDLARVLD 68 Query: 68 SPISFFFDVSP 78 PI+FFFD P Sbjct: 69 VPIAFFFDGMP 79 >gi|27377896|ref|NP_769425.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27351042|dbj|BAC48050.1| bll2785 [Bradyrhizobium japonicum USDA 110] Length = 134 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 55/119 (46%), Positives = 83/119 (69%), Gaps = 6/119 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI +GKRIRLRR+ + +SQ +LGE LG++FQQVQKYEKGVNRVGA+RLQ I+ L+ P++ Sbjct: 21 DIELGKRIRLRRVEMKISQAELGEKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 80 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF+D D + E + F+ + L+L R + +I D V+++++ L+ SI ++E Sbjct: 81 FFYD------GDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSLMESIAANE 133 >gi|294084637|ref|YP_003551395.1| putative transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664210|gb|ADE39311.1| Predicted transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] Length = 155 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 16/135 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD++VGKR+RLRR +LGMSQE+LG L ITFQQVQKYE+G NR+ ASRL I ++L+ Sbjct: 19 NAVDMHVGKRVRLRRTLLGMSQEQLGTELNITFQQVQKYERGANRISASRLWDIGQILDV 78 Query: 69 PISFFFD--------VSPTVCS------DISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 PI++FFD SP S D+ E+ + D ++ + L+L R + I+ Sbjct: 79 PINYFFDDMTENTMQSSPRRISRGGEILDLVDEQ--IKDPMARRETLELVRSYYSIEKPL 136 Query: 115 VRQKIIELVRSIVSS 129 VR++I E+V+SI ++ Sbjct: 137 VRKRISEMVKSIATT 151 >gi|58039234|ref|YP_191198.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58001648|gb|AAW60542.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 212 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 46/67 (68%), Positives = 58/67 (86%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 PVD++VG RIRLRR ++G+SQEKLGE LG+TFQQ+QKYE+G NRVGASRL +++VL+ Sbjct: 34 GPVDVHVGNRIRLRRTLMGLSQEKLGEALGLTFQQIQKYERGANRVGASRLYDLAQVLDV 93 Query: 69 PISFFFD 75 PI FFFD Sbjct: 94 PIGFFFD 100 >gi|114571474|ref|YP_758154.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114341936|gb|ABI67216.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 128 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/125 (49%), Positives = 88/125 (70%), Gaps = 8/125 (6%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P +D +VG R+RLRR +L MSQ +LGE LG+TFQQVQKYE+G NR+GASRL ++++V E Sbjct: 6 PTSIDQHVGARLRLRRSLLEMSQSELGEKLGVTFQQVQKYERGTNRIGASRLFNVAKVTE 65 Query: 68 SPISFFFDVSPTVCSDISSE-----ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P+S+FF+ + D SSE + + DFI++PDGL L F I D VR+++I+L Sbjct: 66 VPVSYFFE---GLEEDGSSELKGGDSDTLYDFIASPDGLALASAFAGIKDQTVRRRVIDL 122 Query: 123 VRSIV 127 +RS+ Sbjct: 123 LRSLA 127 >gi|146339475|ref|YP_001204523.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192281|emb|CAL76286.1| putative transcriptional regulatory protein [Bradyrhizobium sp. ORS278] Length = 131 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/119 (46%), Positives = 82/119 (68%), Gaps = 6/119 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI +GKRIRLRR+ +SQ +LGE LG++FQQVQKYEKGVNRVGA+RLQ I+ L+ P++ Sbjct: 18 DIELGKRIRLRRVEQKISQAELGEKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 77 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF+D D + E + F+ + L+L R + +I D V+++++ L+ SI ++E Sbjct: 78 FFYD------GDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSLMESIAANE 130 >gi|148254259|ref|YP_001238844.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406432|gb|ABQ34938.1| putative transcriptional regulatory protein [Bradyrhizobium sp. BTAi1] Length = 131 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/119 (46%), Positives = 82/119 (68%), Gaps = 6/119 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI +GKRIRLRR+ +SQ +LGE LG++FQQVQKYEKGVNRVGA+RLQ I+ L+ P++ Sbjct: 18 DIELGKRIRLRRVEQKISQAELGEKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 77 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF+D D + E + F+ + L+L R + +I D V+++++ L+ SI ++E Sbjct: 78 FFYD------GDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVALMESIAANE 130 >gi|197103164|ref|YP_002128542.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480440|gb|ACG79967.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 171 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 53/129 (41%), Positives = 83/129 (64%), Gaps = 5/129 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D++VG R+RLRR LG++Q+ L E L +TFQQVQKYE+G NR+ AS L IS+VLE Sbjct: 23 PDPIDVHVGLRVRLRRKALGLTQQSLAEALDLTFQQVQKYERGANRISASTLFRISQVLE 82 Query: 68 SPISFFF----DVSPTVCSDISSEENNVM-DFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P+S+FF D + + + V+ D + P+G L F+ I +R+ + +L Sbjct: 83 VPVSYFFDGLHDPAKVAGERFAQVYDTVLQDLLLEPNGPALAEAFLSIRRRGIRKSVTDL 142 Query: 123 VRSIVSSEK 131 VR+I ++++ Sbjct: 143 VRAIAANDE 151 >gi|167645114|ref|YP_001682777.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347544|gb|ABZ70279.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 120 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 84/117 (71%), Gaps = 5/117 (4%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-VSPT 79 +RR +LG+SQE L + LG+TFQQVQKYE+G NRV AS+L I++ L+ P+S+FFD ++ Sbjct: 1 MRRKMLGVSQEALADALGLTFQQVQKYERGANRVSASKLYEIAKTLQVPVSYFFDGLADP 60 Query: 80 VCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + +D+ ++ E V +F++TP+GL+L F +I +VR+++++LVR++ E + Sbjct: 61 MTNDVDEVGAAAERVVTEFLNTPEGLELAEMFPKIGRGRVRRQVLDLVRAMAEDETR 117 >gi|46200999|ref|ZP_00056012.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 133 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 53/124 (42%), Positives = 79/124 (63%), Gaps = 9/124 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R+RLRR ++G+SQE LGE LG+TFQQ+QKYE+G NR+GASRL +S LE P+ + Sbjct: 1 MHVGSRLRLRRTLMGLSQEALGEALGLTFQQIQKYERGANRIGASRLFDLSRALEVPVEY 60 Query: 73 FFD--------VSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F+D SP + E +D +S + L L R + +I D+ VR+++ EL Sbjct: 61 FYDEMSADVMAASPRHMVRATEEPAPQRIDPMSKRETLDLVRTYYKIGDLNVRKRVYELA 120 Query: 124 RSIV 127 R++ Sbjct: 121 RALA 124 >gi|304320427|ref|YP_003854070.1| hypothetical protein PB2503_04267 [Parvularcula bermudensis HTCC2503] gi|303299329|gb|ADM08928.1| hypothetical protein PB2503_04267 [Parvularcula bermudensis HTCC2503] Length = 122 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 80/113 (70%), Gaps = 9/113 (7%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 M+ G+SQEKLGE LG+TFQQVQKYEKGVNR+GA RL I+++L+ P+ FF+D + D Sbjct: 1 MMQGISQEKLGEDLGLTFQQVQKYEKGVNRIGAGRLFEIAQILDVPVQFFYDDFQSDEDD 60 Query: 84 IS---------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + +E ++ ++T DG+QL + F++I+DV +R++I++LV++I Sbjct: 61 STLSEETTGYEAERTDLFASLATSDGMQLAQAFLRINDVTIRRRIVDLVKAIA 113 >gi|329847816|ref|ZP_08262844.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842879|gb|EGF92448.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 138 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 83/121 (68%), Gaps = 1/121 (0%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN VD++VG R+RLRR +LG+SQ+ L + +TFQQVQKYE+G NR+ AS+L I++ L+ Sbjct: 14 PNKVDLHVGARVRLRRKLLGLSQDGLAARIDLTFQQVQKYERGSNRISASKLYEIAQALQ 73 Query: 68 SPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + FF+ TV ++ + E +V F+ TP+G++L F +I K+R++++ELV ++ Sbjct: 74 CKVEHFFEGLETVETEAPVQVEQDVNSFLCTPEGIELAGGFPKIRSAKLRRRVLELVNTL 133 Query: 127 V 127 Sbjct: 134 A 134 >gi|197106910|ref|YP_002132287.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480330|gb|ACG79858.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 144 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 84/123 (68%), Gaps = 1/123 (0%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD +VG RIR+RR LGMSQE+L E +G+TFQQVQKYE+ NRV AS+L ++ L+ Sbjct: 16 PNPVDRHVGLRIRMRRKELGMSQERLAEAIGLTFQQVQKYERATNRVSASKLFEMARALQ 75 Query: 68 SPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + I++F++ + + S + V F+ + DG++L F +I +VR++I++LVR++ Sbjct: 76 TSIAYFYEGLEEAGAGEASPPSDEVQTFLMSHDGMELAHAFPRIRQARVRRRILDLVRAV 135 Query: 127 VSS 129 + Sbjct: 136 AET 138 >gi|114799525|ref|YP_758842.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739699|gb|ABI77824.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 145 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/128 (45%), Positives = 82/128 (64%), Gaps = 4/128 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+P+ +D VG+ I +R L ++QEKLGE LG+TFQQVQKYEKGVNRV A RL I+ V Sbjct: 5 KLPSDIDRVVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYEIAGV 64 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMD----FISTPDGLQLNRYFIQIDDVKVRQKIIE 121 LE P+ FFFD + TV S+ +E +D + + + LQL F +I+D +R ++ Sbjct: 65 LEVPVEFFFDGADTVVSNGVAELAEDLDDTQLAVLSDEVLQLIEAFQKIEDAALRGSLLA 124 Query: 122 LVRSIVSS 129 VR+ S+ Sbjct: 125 TVRAAASA 132 >gi|88657049|gb|ABD47298.1| RegA [Rhizobium leguminosarum bv. trifolii TA1] Length = 99 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 49/94 (52%), Positives = 65/94 (69%), Gaps = 2/94 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITF+Q+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQNGLAELLGITFRQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 L P+ FFF+ + I + N + F+S+ D Sbjct: 64 LRVPVGFFFENGGS--GPIDGQTNELNSFLSSKD 95 >gi|218510475|ref|ZP_03508353.1| probable transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 98 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 52/97 (53%), Positives = 66/97 (68%), Gaps = 5/97 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDSYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFF---DVSPTVCSDISSEENN--VMDFI 95 EVL + SFFF D P + ++ V +F+ Sbjct: 62 EVLHTSPSFFFEQGDSGPVAVRGLDGPDHTDPVAEFL 98 >gi|167646240|ref|YP_001683903.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348670|gb|ABZ71405.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 136 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD++VG+RIRLRR + G SQ ++ + LG+TFQQ+QKYE+G NR+ AS+LQ ++ L Sbjct: 6 PHPVDLHVGQRIRLRRKLAGASQTQVADALGLTFQQLQKYERGTNRISASKLQALALHLR 65 Query: 68 SPISFFFDV--SPTV-CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 PI++FF+ PT + I+ + V F+++ +G++L F +I + R +I+ LVR Sbjct: 66 VPINWFFEGLEEPTAEDAAINRRQTAVDAFLASREGVELALAFPRIGSGQ-RNQILALVR 124 Query: 125 SIVSSEK 131 ++ + E+ Sbjct: 125 TLAAEEE 131 >gi|89053723|ref|YP_509174.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88863272|gb|ABD54149.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 126 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 81/120 (67%), Gaps = 3/120 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G +Q++L E +GI FQQ+QKYE G+NRV ASRL I E L Sbjct: 1 MTHPVDVHVGKRIRHRRWMVGRTQQQLAETVGIKFQQIQKYETGMNRVSASRLWDIGEAL 60 Query: 67 ESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + P+++FF+ S V SD ++ E D ++ + L+L R + I + + R+++ +L R Sbjct: 61 DVPVAYFFEGVGSEEVASDTATGEALPGDLLADREALELVRSYYAIPENQ-RRRLFDLAR 119 >gi|149914411|ref|ZP_01902942.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149811930|gb|EDM71763.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 123 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI+VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MPHPVDIHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + +SFFF+ T + E D + + L L R + I + + R+++ +L R Sbjct: 61 DVDVSFFFEGLETDSGKSEAGEKVPADLLGDKEALDLVRSYYAIPENQ-RRRLFDLAR 117 >gi|190404401|ref|YP_001961032.1| rcorf57 [Agrobacterium rhizogenes] gi|158322197|gb|ABW33614.1| rcorf57 [Agrobacterium rhizogenes] Length = 163 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 81/132 (61%), Gaps = 12/132 (9%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P+D+ VG +R GMSQ L E LG+TFQQVQKYEKG NRVGASRL +++ + Sbjct: 33 KAPSPIDVEVGASVR------GMSQSTLAEALGVTFQQVQKYEKGTNRVGASRLLNVATL 86 Query: 66 LESPISFFFDV-----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L P+S+FFD P + +E + F+ T +G LN F +I +R++++ Sbjct: 87 LGVPVSYFFDSQSRDGKPDGLTGTGAEM-ELSAFLDTDEGRDLNVAFARIARPALRRQVL 145 Query: 121 ELVRSIVSSEKK 132 LV+++ +++ K Sbjct: 146 SLVKAMAATDVK 157 >gi|220922145|ref|YP_002497446.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946751|gb|ACL57143.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 134 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/115 (46%), Positives = 78/115 (67%), Gaps = 4/115 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ +LE P+ Sbjct: 8 VDRLVGIRITALRKAKGLSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARLLEVPV 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 S FF+ P +D + ++NV F+ST + + R ++QI+D ++R++++ +VRS Sbjct: 68 SAFFE-EP---NDAAGRDDNVFGFLSTQGAVDILRAYVQIEDDQLRREVLAIVRS 118 >gi|170740688|ref|YP_001769343.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194962|gb|ACA16909.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 134 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/115 (46%), Positives = 76/115 (66%), Gaps = 4/115 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ +LE P+ Sbjct: 8 VDRLVGIRITALRKAKGLSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARLLEVPV 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 S FF+ P SD + NV F+ST + + R ++QI+D ++R++++ +VRS Sbjct: 68 SAFFE-DP---SDTQGNDENVFGFLSTQGAIDVLRAYVQIEDDQLRREVLAIVRS 118 >gi|222109145|ref|YP_002551410.1| transcriptional regulator Cro/CI family [Agrobacterium vitis S4] gi|221738419|gb|ACM39284.1| transcriptional regulator Cro/CI family [Agrobacterium vitis S4] Length = 141 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/138 (42%), Positives = 81/138 (58%), Gaps = 4/138 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ VD+ VG+ IR RRMI G+SQ LG +G+TFQQVQKYEKG NRV AS L I+ Sbjct: 2 KDEPHAVDVAVGRAIRKRRMINGVSQSDLGARIGVTFQQVQKYEKGTNRVSASMLMEIAC 61 Query: 65 VLESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L + FFD + + F T + + LN+ F QI+D +R+KI++LV Sbjct: 62 ALHVDVRSFFDGIDAPSGKEPLHHTATPAAFSITRETVALNQAFAQINDALLRRKIVDLV 121 Query: 124 RSIVSSEKKYRTIEEECM 141 R++ SS T E+E + Sbjct: 122 RAVASSSS---TSEDELL 136 >gi|288958165|ref|YP_003448506.1| transcriptional regulator [Azospirillum sp. B510] gi|288910473|dbj|BAI71962.1| transcriptional regulator [Azospirillum sp. B510] Length = 155 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/125 (46%), Positives = 92/125 (73%), Gaps = 6/125 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+DI+VG R+RLRR +LG+SQEKLGE +GITFQQ+QKYE+G NR+ ASRL ++S+VL Sbjct: 21 PNPIDIHVGARLRLRRTLLGLSQEKLGEAVGITFQQLQKYERGSNRISASRLYNLSQVLG 80 Query: 68 SPISFFFDVSPT---VCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P+S+FFD P+ + ++ SE E + + ++ + L+L R + +I+D VR++ + Sbjct: 81 VPVSYFFDDMPSPDQITAETPSESMSETDEFESMARRETLELVRAYYRIEDPGVRKRTFD 140 Query: 122 LVRSI 126 L++++ Sbjct: 141 LLKAL 145 >gi|167647540|ref|YP_001685203.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167349970|gb|ABZ72705.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 140 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 72/103 (69%), Gaps = 2/103 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD+ VG R+R+RR +LG+SQ +L + LGITFQQ+QKYE+G NR+ AS+L + +L Sbjct: 9 MAHPVDLYVGARLRIRRKVLGLSQTQLADALGITFQQIQKYERGANRISASKLYEAARLL 68 Query: 67 ESPISFFFD-VSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 +SP+++FFD + T + + + F++TP+GL+L F Sbjct: 69 QSPVAYFFDGLDDTAQNGLDDGFAQRMTQFVATPEGLELASLF 111 >gi|56697797|ref|YP_168167.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679534|gb|AAV96200.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 123 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 1/116 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD++VGKR+R RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+E L+ Sbjct: 3 HPVDVHVGKRVRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIAEALDV 62 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+SFFF+ ++ + + D + + L L R + I + + R+++ EL R Sbjct: 63 PVSFFFEGLEEAEKVVAEKPSVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 117 >gi|188582991|ref|YP_001926436.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346489|gb|ACB81901.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 8/129 (6%) Query: 4 NKKIPNP-----VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + +P P D VG RI R G+SQ LG +G+TFQQVQKYEKG+NRVGA R Sbjct: 2 STSVPKPRHTTEADRIVGLRITTLRKARGLSQTALGTAVGVTFQQVQKYEKGLNRVGAGR 61 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L I+ +LE P+S FF+ + + ++ V+DF+ + L R F I+D ++R+K Sbjct: 62 LSEIAHLLEVPVSAFFEEADGATAQ---KQTEVVDFLRVHGAVDLLRAFATIEDDQLRRK 118 Query: 119 IIELVRSIV 127 ++ +VRS+ Sbjct: 119 VLAIVRSVA 127 >gi|163737462|ref|ZP_02144879.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|161388988|gb|EDQ13340.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 123 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGMTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+SFFF+ + S + D + + L L R + I + + R+++ EL R Sbjct: 61 SVPVSFFFEGLQDDDAPASDKAQVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 117 >gi|254464668|ref|ZP_05078079.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206685576|gb|EDZ46058.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 123 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 E P+SFFF+ + + D + + L L R + I + + R+++ EL R Sbjct: 61 EVPVSFFFEGLQEEGKAPAEKSAVPEDLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 117 >gi|240851141|ref|YP_002972543.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268264|gb|ACS51852.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 151 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 46/84 (54%), Positives = 66/84 (78%), Gaps = 7/84 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR +R ++GMSQ+KLG LG+TFQQ+QKYEKG NR+GA RLQ I+++ Sbjct: 38 KNPHFNDISIGRKIRFKRTMIGMSQKKLGSQLGVTFQQIQKYEKGSNRIGAGRLQEIADI 97 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 LE PISFF+ +D+S++EN Sbjct: 98 LEVPISFFY-------TDLSTKEN 114 >gi|260574596|ref|ZP_05842599.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259023013|gb|EEW26306.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 120 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 8/120 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VGKRIR RR ++GM+Q++L + +GI FQQ+QKYE G+NRV ASRL I+E L Sbjct: 1 MKHPVDAHVGKRIRHRRWMVGMTQQQLADRVGIKFQQIQKYETGMNRVSASRLWDIAETL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ISFFF+ D S E + M DF++ + L+L R + I + + R+++ +L R Sbjct: 61 GVAISFFFE-----GIDESREASKTMDGDFLADKEALELVRSYYSIPEAQ-RRRLFDLAR 114 >gi|197105530|ref|YP_002130907.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196478950|gb|ACG78478.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 128 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 6/125 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + I +PVD+ VG RIRL R + G+SQ+ L E G+TFQQ+QKYE+G NRV AS L I+ Sbjct: 6 EAIADPVDVAVGARIRLLRKLKGLSQQALAEAAGVTFQQIQKYERGANRVSASMLARIAR 65 Query: 65 VLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L P++ F + SPT SS + V ++ P L+L + + + R ++E V Sbjct: 66 TLGVPVAEMFGEASPT-----SSAVDEVAALLAEPGALELLKAYADLPRGASRSALVEFV 120 Query: 124 RSIVS 128 RS+ S Sbjct: 121 RSLRS 125 >gi|77462437|ref|YP_351941.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126461314|ref|YP_001042428.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|146276727|ref|YP_001166886.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|332560321|ref|ZP_08414643.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77386855|gb|ABA78040.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126102978|gb|ABN75656.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] gi|145554968|gb|ABP69581.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17025] gi|332278033|gb|EGJ23348.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 120 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 4/118 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VGKRIR RR ++GM+Q++L +C+GI FQQ+QKYE G+NRV ASRL I+E L Sbjct: 1 MKHPVDAHVGKRIRHRRWMVGMTQQQLADCVGIKFQQIQKYETGMNRVSASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ISFFF+ E D I+ + L+L R + I + + R+++ +L R Sbjct: 61 GVSISFFFEGLEGAGDQARQAEG---DRITDKEALELVRSYYAIPEAQ-RRRLFDLAR 114 >gi|259416694|ref|ZP_05740614.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259348133|gb|EEW59910.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 124 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 2/119 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ISFFF+ + + E+ V D + + L L R + I + + R+++ EL R Sbjct: 61 DVNISFFFEGLQDETAKVVPEKARVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 118 >gi|307315947|ref|ZP_07595440.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307322835|ref|ZP_07602141.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306891521|gb|EFN22401.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306898408|gb|EFN29102.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 144 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/133 (44%), Positives = 88/133 (66%), Gaps = 7/133 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P PVD++VG+RIR+RR+ + ++ L + +G+TFQQVQKYEKG NRVGASRLQ I++ Sbjct: 10 KGKPEPVDVHVGRRIRMRRIWMQVTLTALADAIGVTFQQVQKYEKGTNRVGASRLQQIAD 69 Query: 65 VLESPISFFFDVSP---TVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVRQ 117 L +P+S+FF+ P V D S + +++F S+ GL L R F QI D +VR Sbjct: 70 ALVAPVSYFFEDMPGAAPVGGDNRSGQKKLQPEIIEFASSDVGLALIRAFSQITDKRVRD 129 Query: 118 KIIELVRSIVSSE 130 +I+ LV+++ + Sbjct: 130 RILGLVKALAKQD 142 >gi|254511979|ref|ZP_05124046.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221535690|gb|EEE38678.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 123 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/119 (43%), Positives = 80/119 (67%), Gaps = 3/119 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKR+R RR ++GM+Q++L + +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MTHHVDVHVGKRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRVSASRLWDIAEAL 60 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 E P+SFFF+ + T SD S +++ D + + L L R + I + + R+++ EL R Sbjct: 61 EVPVSFFFEGLEETQKSD-SDKKSVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 117 >gi|170749530|ref|YP_001755790.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656052|gb|ACB25107.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 162 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 4/117 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD VG RI R GMSQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ +LE P+ Sbjct: 37 VDRLVGIRITALRKARGMSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARLLEVPV 96 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 S FF+ S + + +V F+S ++L R + QI+D ++R+ ++ LVRS Sbjct: 97 SAFFEES----EPRENAQEDVFGFLSAHGAIELLRAYAQIEDEQMRRDVLALVRSAA 149 >gi|188580819|ref|YP_001924264.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179344317|gb|ACB79729.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 70/111 (63%), Gaps = 3/111 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI R G+SQ LG +G+TFQQVQKYE+G NRVGA RLQ I+ +LE P+S FF Sbjct: 18 VGERIVALRKARGLSQAALGAAVGVTFQQVQKYERGTNRVGAGRLQEIARLLEVPVSAFF 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 D D+ + +V F+ + L R F I+D ++R++++ +VRS Sbjct: 78 DEGNGAAGDMQA---DVFGFLRIHGAIDLLRAFATIEDDQLRREVLAIVRS 125 >gi|99081750|ref|YP_613904.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038030|gb|ABF64642.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 123 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ISFFF+ + + D + + L L R + I + + R+++ EL R Sbjct: 61 DVNISFFFEGLQDETKSVPDKARVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 117 >gi|49476099|ref|YP_034140.1| DNA-binding protein [Bartonella henselae str. Houston-1] gi|49238907|emb|CAF28202.1| DNA-binding protein [Bartonella henselae str. Houston-1] Length = 152 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/84 (57%), Positives = 65/84 (77%), Gaps = 7/84 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI+VGKRIR RR +LG+SQ++LG LG+TFQQ+QKYEKG+NRVGA RLQ I+ + Sbjct: 38 KNPHFNDISVGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEKGINRVGAGRLQEIATL 97 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L+ ISFF+ +DIS++E+ Sbjct: 98 LDVSISFFY-------ADISTKEH 114 >gi|126739240|ref|ZP_01754934.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126719857|gb|EBA16565.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 122 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/120 (43%), Positives = 77/120 (64%), Gaps = 6/120 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G +Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGKTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 E P+SFFF+ + D + N + D + + L L R + I + + R+++ EL R Sbjct: 61 EVPVSFFFE---GLEEDGKAAGNTAVPDDLMGDKEALDLVRSYYSIPENQ-RRRLFELAR 116 >gi|16126569|ref|NP_421133.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235351|ref|YP_002517788.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] gi|13423855|gb|AAK24301.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964524|gb|ACL95880.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] Length = 135 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 43/100 (43%), Positives = 71/100 (71%), Gaps = 1/100 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD+ VG R+R+RR ++G+SQ ++ + LGITFQQ+QKYE+G NR+ AS+L +++L++ Sbjct: 11 HPVDLYVGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQA 70 Query: 69 PISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 P+S+FF+ + T + +F+STP+GL+L F Sbjct: 71 PVSYFFEGLEDTDGGVDDGFAQRMTEFVSTPEGLELASLF 110 >gi|218532713|ref|YP_002423529.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525016|gb|ACK85601.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 135 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 3/130 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K D VG+RI++ R G+SQ LG LG+TFQQ+QKYE GVNRVGASRL ++ V Sbjct: 9 KCATEQDRLVGERIKVLRKSKGISQTALGSALGVTFQQIQKYENGVNRVGASRLSEVARV 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ + + + V +F+ + L FI I+D ++R++++ LVR Sbjct: 69 LEVPVSTFFEEGGGL---VEQGQQEVFEFLRVRGAVDLLNAFIAIEDDQLRREVLALVRC 125 Query: 126 IVSSEKKYRT 135 ++K RT Sbjct: 126 AARMKQKQRT 135 >gi|294676430|ref|YP_003577045.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475250|gb|ADE84638.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 120 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 50/120 (41%), Positives = 78/120 (65%), Gaps = 12/120 (10%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD++VGKRIR RR ++G++Q++L + +GI FQQ+QKYE G+NRV ASRL I++ L+ Sbjct: 3 HPVDVHVGKRIRHRRWLVGVTQQQLADKVGIKFQQIQKYETGMNRVSASRLWDIADALDV 62 Query: 69 PISFFFDVSPTVCSDISSEENNVM----DFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+SFFF+ +S E+ N D S + L L R + I + + R+++ EL + Sbjct: 63 PVSFFFE-------GLSGEDPNTAAQEGDLFSDKEALALVRSYYAIPEAQ-RRRLFELAK 114 >gi|167644985|ref|YP_001682648.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347415|gb|ABZ70150.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 149 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 81/128 (63%), Gaps = 9/128 (7%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ VDI+VG R+R+RR LG+SQ +L + +GITFQQ+QKYE+G NRV AS+L ++ L+ Sbjct: 7 PHLVDIHVGARVRMRRKALGLSQTQLADSVGITFQQLQKYERGANRVSASKLYGMAVTLQ 66 Query: 68 SPISFFFDVSPTVCSDISSEEN--------NVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + +S+FF V ++EE + F+ + +GL+L F QI + RQ++ Sbjct: 67 TSVSWFFQGLSAVDVANATEEQMLEEHRLKGLQRFLLSSEGLELASLFPQIPPTQ-RQQL 125 Query: 120 IELVRSIV 127 + L +S++ Sbjct: 126 LALAKSLI 133 >gi|84515302|ref|ZP_01002664.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84510585|gb|EAQ07040.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 123 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/119 (45%), Positives = 76/119 (63%), Gaps = 7/119 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD+ VGKRIR RR + G +Q++L E +GI FQQ+QKYE G+NRV ASRL IS VL Sbjct: 3 HPVDVYVGKRIRHRRWMNGTTQQQLAENVGIKFQQIQKYETGMNRVSASRLWDISNVLGV 62 Query: 69 PISFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+SFFF D P V + IS D ++ + L+L R + I + + R+++ +L R Sbjct: 63 PVSFFFEGYDAQPAVETRISDMPG---DILTDKEALELLRSYYAIPENQ-RRRLFDLAR 117 >gi|209546420|ref|YP_002278310.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539277|gb|ACI59210.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 134 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 86/131 (65%), Gaps = 9/131 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHSVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFD--VSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ + FFD +P +D SEE FI + +G+ LN F I + +R+KI+ Sbjct: 62 ALKVDVRTFFDDLSAPDTANDNPAPSEE-----FIISREGVLLNAAFFSIKNEALRKKIL 116 Query: 121 ELVRSIVSSEK 131 +LV++I +E+ Sbjct: 117 KLVQAIAHTEQ 127 >gi|16519652|ref|NP_443772.1| uncharacterized transcription regulator (Cro/CI family) [Sinorhizobium fredii NGR234] gi|2496579|sp|P55360|Y4AM_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4aM gi|2182302|gb|AAB91610.1| uncharacterized transcription regulator (Cro/CI family) [Sinorhizobium fredii NGR234] Length = 143 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 7/125 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VDI VG+RIR RR MSQ LGE +G+TFQQVQKYEKG NRVGA RLQ IS+ LE Sbjct: 14 NAVDIYVGRRIRQRRRWQNMSQAALGEAIGVTFQQVQKYEKGSNRVGAGRLQQISDALEV 73 Query: 69 PISFFFDVSPTVCSDISSEENN-------VMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 S+FF+ P I N V++F ++ +G++L R F ++ ++ VR +I++ Sbjct: 74 HPSYFFEDMPDDTQSIGQGAPNQAYIPPEVIEFAASDEGVELIRAFSRVGNLNVRCRIVK 133 Query: 122 LVRSI 126 L++S+ Sbjct: 134 LLKSL 138 >gi|190895672|ref|YP_001985964.1| transcriptional regulator Cro/CI family [Rhizobium etli CIAT 652] gi|218658231|ref|ZP_03514161.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli IE4771] gi|190699617|gb|ACE93701.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] gi|327194885|gb|EGE61716.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CNPAF512] Length = 134 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 9/131 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHAVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFD--VSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ + FFD +P +D SEE F+ + +G+ LN F I + +R+KI+ Sbjct: 62 ALKVDVRTFFDDLSTPDTANDNPAPSEE-----FVISREGVLLNAAFFSIKNEALRKKIL 116 Query: 121 ELVRSIVSSEK 131 +LV++I +E+ Sbjct: 117 KLVQAIAHTEQ 127 >gi|288957911|ref|YP_003448252.1| transcriptional regulator [Azospirillum sp. B510] gi|288910219|dbj|BAI71708.1| transcriptional regulator [Azospirillum sp. B510] Length = 353 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 41/66 (62%), Positives = 54/66 (81%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +VG+R+R+RR +LGMSQEKLGE +G+TFQQVQKYE+G NR+ A L + +VL+ P+ Sbjct: 125 VDAHVGQRVRMRRTLLGMSQEKLGEAIGLTFQQVQKYERGSNRISAGTLYRLGQVLDVPV 184 Query: 71 SFFFDV 76 SFFFD Sbjct: 185 SFFFDT 190 >gi|86360708|ref|YP_472596.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86284810|gb|ABC93869.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 134 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 9/131 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHAVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFD--VSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L + FFD +P +D SEE F+ + +G+ LN F I + +R+KI+ Sbjct: 62 ALNVDVRTFFDDLSTPVTANDNPAPSEE-----FVISREGVLLNAAFFSIKNEALRKKIL 116 Query: 121 ELVRSIVSSEK 131 +LV++I +E+ Sbjct: 117 KLVQAIAHTEQ 127 >gi|260432963|ref|ZP_05786934.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416791|gb|EEX10050.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 123 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKR+R RR ++GM+Q++L + +GI FQQ+QKYE G NR+ ASRL I+E L Sbjct: 1 MTHHVDVHVGKRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRISASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + P+SFFF+ S +++ D + + L L R + I + + R+++ EL R Sbjct: 61 DVPVSFFFEGLEETQKADSDKQSVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 117 >gi|254461884|ref|ZP_05075300.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678473|gb|EDZ42960.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 135 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 50/120 (41%), Positives = 77/120 (64%), Gaps = 3/120 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G++Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 11 MAHPVDVHVGKRIRHRRWLVGVTQQRLAETVGIKFQQIQKYETGANRVSASRLWDIAESL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 E +SFFF + I E+ + D ++ + L L R + I + + R+++ +L R Sbjct: 71 EVDVSFFFSGLQNEDAAIGDAESGAVPSDILNDKEALDLVRSYYAIPEEQ-RRRLFDLAR 129 >gi|49475984|ref|YP_034025.1| DNA-binding protein [Bartonella henselae str. Houston-1] gi|49238792|emb|CAF28061.1| DNA-binding protein [Bartonella henselae str. Houston-1] Length = 118 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 47/86 (54%), Positives = 65/86 (75%), Gaps = 7/86 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI+VGK+IR RR I+G+SQ++LG LGITFQQ+QKYEKG+NRV A RLQ I++ Sbjct: 4 KNPHFNDISVGKKIRFRRSIMGLSQKQLGSHLGITFQQIQKYEKGINRVSAGRLQEIADR 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNV 91 L+ P+SFF+ +DIS +E+ + Sbjct: 64 LDVPVSFFY-------ADISKKEDTL 82 >gi|49476100|ref|YP_034141.1| DNA binding protein [Bartonella henselae str. Houston-1] gi|49238908|emb|CAF28203.1| DNA binding protein [Bartonella henselae str. Houston-1] Length = 152 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 48/84 (57%), Positives = 64/84 (76%), Gaps = 7/84 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI+VGKRIR RR +LG+SQ++LG LG+TFQQ+QKYEKG+NRVGA RLQ I+ + Sbjct: 38 KNPHFNDISVGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEKGINRVGAGRLQEIATL 97 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L+ ISFF+ +DIS +E+ Sbjct: 98 LDVSISFFY-------ADISKKEH 114 >gi|163849609|ref|YP_001637652.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163661214|gb|ABY28581.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 135 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ VG RI+ R G+SQ LG +G++FQQ+QKYE G NRVGA RL I+ VL +P+S Sbjct: 15 DVIVGLRIQTLRKSRGISQTALGIAIGVSFQQIQKYEIGANRVGAGRLSDIARVLGAPVS 74 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF+ + E+ V D + P + L FI I+D ++R++++ LVRS E+ Sbjct: 75 VFFEEGDAAA---AQEKTEVFDLLRAPGAVDLLNAFITIEDDRLRREVLALVRSAARMEQ 131 Query: 132 KY 133 + Sbjct: 132 DH 133 >gi|295690474|ref|YP_003594167.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432377|gb|ADG11549.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 135 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 42/100 (42%), Positives = 71/100 (71%), Gaps = 1/100 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD+ VG R+R+RR ++G+SQ ++ + LGITFQQ+QKYE+G NR+ AS+L +++L++ Sbjct: 11 HPVDLYVGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQA 70 Query: 69 PISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 P+S+F++ + T + +F+STP+GL+L F Sbjct: 71 PVSYFYEGLEDTDGGLDDGFAQRMTEFVSTPEGLELAGLF 110 >gi|163868974|ref|YP_001610203.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018650|emb|CAK02208.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 130 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 3/85 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +DI++GKRIR RR+ +G+SQ++LG LG++FQQVQKYEKG NRV A RLQ I+ Sbjct: 11 KNPNFIDISIGKRIRHRRISMGLSQKELGSHLGVSFQQVQKYEKGFNRVSAGRLQEIANR 70 Query: 66 LESPISFFF-DVSPTVCSDISSEEN 89 LE PI FF+ D++ DI ++EN Sbjct: 71 LEVPIHFFYADIA--TKEDIPTKEN 93 >gi|85706845|ref|ZP_01037936.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668638|gb|EAQ23508.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 124 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 2/119 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MPHPVDVHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIAESL 60 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ISFFF+ + + + D + + L L R + I + + R+++ +L R Sbjct: 61 DVTISFFFEGLEQDGGVEREKSDPARADLMGDKEALDLVRSYYAIPENQ-RRRLFDLAR 118 >gi|240851140|ref|YP_002972542.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268263|gb|ACS51851.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 151 Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 44/84 (52%), Positives = 65/84 (77%), Gaps = 7/84 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR +R ++GMSQ++LG LG+TFQQ+QKYEKG NR+GA RLQ I+++ Sbjct: 38 KNPHFNDISIGRKIRFKRTMIGMSQKQLGSQLGVTFQQIQKYEKGSNRIGAGRLQEIADI 97 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 LE P SFF+ +D+S++EN Sbjct: 98 LEVPSSFFY-------TDLSTKEN 114 >gi|149203704|ref|ZP_01880673.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149142821|gb|EDM30863.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 124 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 2/119 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MPHPVDVHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIAESL 60 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ISFFF+ + + + D + + L L R + I + + R+++ +L R Sbjct: 61 DVEISFFFEGLDQEGGVEREKSDPARADLMGDKEALDLVRSYYAIPENQ-RRRLFDLAR 118 >gi|260426926|ref|ZP_05780905.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421418|gb|EEX14669.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 123 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MTHPVDVHVGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + +SFFF+ T S D + + L L R + I + + R+++ EL R Sbjct: 61 DVSVSFFFEGLETEQDAPVSAAAMPSDILGDKEALDLVRSYYAIPENQ-RRRLFELAR 117 >gi|209963989|ref|YP_002296904.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209957455|gb|ACI98091.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 156 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/123 (44%), Positives = 85/123 (69%), Gaps = 3/123 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+DI+VG+R+RLRR +LG+SQE LGE +GITFQQ+QKYE+G NR+ ASRL ++S+VL Sbjct: 25 PNPIDIHVGQRLRLRRTLLGLSQETLGEAVGITFQQLQKYERGANRISASRLFNLSQVLG 84 Query: 68 SPISFFFDVSPTVCSDI---SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P++FFF+ P + E + ++ + L+L R + +I D VR++ +LV+ Sbjct: 85 VPVTFFFEDLPASGPEAPLDGGSETQEFESMARRETLELVRAYYRIPDEGVRRRAFDLVK 144 Query: 125 SIV 127 ++ Sbjct: 145 ALA 147 >gi|159045315|ref|YP_001534109.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913075|gb|ABV94508.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 123 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKR+R RR ++GM+Q++L + +GI FQQ+QKYE G+NRV ASRL I+ L Sbjct: 1 MKHPVDVHVGKRVRHRRWMVGMTQQQLADKVGIKFQQIQKYETGMNRVSASRLWEIASSL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+SFFF+ + + + D +S + L+L R + I + + R+++ +L R Sbjct: 61 GVPVSFFFEGLGAAQVAQTHDIDMPGDLLSDKEALELVRSYYAIPETQ-RRRLFDLAR 117 >gi|241667081|ref|YP_002985165.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862538|gb|ACS60203.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 134 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 87/131 (66%), Gaps = 9/131 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHSVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFD--VSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ + FFD +P +D SEE F+ + +G+ LN F I + +R+KI+ Sbjct: 62 ALKVDVRTFFDDLSTPDNANDNPAPSEE-----FVISREGVLLNAAFFSIKNEALRKKIL 116 Query: 121 ELVRSIVSSEK 131 +LV++I ++E+ Sbjct: 117 KLVQAIANTEQ 127 >gi|240851142|ref|YP_002972544.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268265|gb|ACS51853.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 130 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 44/86 (51%), Positives = 66/86 (76%), Gaps = 7/86 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR +R ++GMSQ++LG LG+TFQQ+QKYEKG NR+GA RLQ I+++ Sbjct: 16 KNPHFNDISIGRKIRFKRTMIGMSQKQLGSQLGVTFQQIQKYEKGSNRIGAGRLQEIADI 75 Query: 66 LESPISFFFDVSPTVCSDISSEENNV 91 LE P SFF+ +D+S++EN + Sbjct: 76 LEVPSSFFY-------ADLSTKENAL 94 >gi|114762993|ref|ZP_01442423.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114544317|gb|EAU47325.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 127 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 41/69 (59%), Positives = 56/69 (81%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MTHPVDVHVGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFD 75 E P+SFFF+ Sbjct: 61 EVPVSFFFE 69 >gi|114327057|ref|YP_744214.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315231|gb|ABI61291.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 152 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 13/133 (9%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN +D++VG+RIRLRR LG+S++KLG+ +GI+ Q+QKYE G R GA RL ++ ++ Sbjct: 18 PNTLDLHVGRRIRLRRAFLGVSEQKLGDLIGISASQIQKYETGTLRAGAVRLFDLARAMD 77 Query: 68 SPISFFFDVSP--TVCSDISSEENNVMDFISTPDG-----------LQLNRYFIQIDDVK 114 ISFFFD P V + + + + F +G L+L + F +I D Sbjct: 78 VSISFFFDEMPEQEVANHGVAAISRLGGFAEPQEGFGDGDTMRQEALELIQAFFRITDPA 137 Query: 115 VRQKIIELVRSIV 127 VR++I+EL+RS+ Sbjct: 138 VRERILELIRSLA 150 >gi|119384129|ref|YP_915185.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373896|gb|ABL69489.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 119 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 15/123 (12%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G+NRV ASRL I++ + Sbjct: 1 MKHNVDVHVGKRIRHRRWMIGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDIAQAV 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM-----DFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + P+SFFF+ E+ +V D ++ + LQL R + + + + RQ I E Sbjct: 61 DVPVSFFFE---------GLEDGHVHNAVEGDILADKEALQLVRAYYAMPEAQRRQ-IFE 110 Query: 122 LVR 124 L R Sbjct: 111 LAR 113 >gi|116255803|ref|YP_771636.1| HTH family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260451|emb|CAK03555.1| putative HTH family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 134 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 9/131 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHSVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFD--VSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ + FFD +P +D SEE F+ + +G+ LN F I + +R+KI+ Sbjct: 62 ALKVDVRTFFDDLSTPDNANDNPAPSEE-----FVISREGVLLNAAFFSIKNEALRKKIL 116 Query: 121 ELVRSIVSSEK 131 +LV++I +E+ Sbjct: 117 KLVQAIAHTEQ 127 >gi|188580238|ref|YP_001923683.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179343736|gb|ACB79148.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 73/127 (57%), Gaps = 3/127 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 4 KQTTDVDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLREIARL 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ + E+ V F+ + L R F I+D ++R++++ +VRS Sbjct: 64 LEVPVSAFFEEGDGAA---AQEQTEVFGFLRAHGAVDLLRAFASIEDDQMRREVLAIVRS 120 Query: 126 IVSSEKK 132 +K Sbjct: 121 AARLGRK 127 >gi|163733431|ref|ZP_02140874.1| transcriptional regulator, Cro/CI family, putative [Roseobacter litoralis Och 149] gi|161393219|gb|EDQ17545.1| transcriptional regulator, Cro/CI family, putative [Roseobacter litoralis Och 149] Length = 125 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 75/116 (64%), Gaps = 3/116 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD++VGKRIR RR ++GM+Q+KL EC+GI FQQ+QKYE G NRV ASRL I++ L+ + Sbjct: 5 VDVHVGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADALDVDV 64 Query: 71 SFFFD-VSPTVCSDISSEENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +FFF+ + D ++V D + + + L R + I + + R+++ EL R Sbjct: 65 AFFFEGLREEAGKDAPEPASSVPADMMGDKEAMDLVRSYYAIPENQ-RRRLFELAR 119 >gi|218529168|ref|YP_002419984.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218521471|gb|ACK82056.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 142 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ +LE P+ Sbjct: 9 VDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLREIARLLEVPV 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S FF+ + E+ V F+ + L R F I+D ++R++++ +VRS Sbjct: 69 SAFFEEGDGAA---AQEQTEVFGFLRAHGAVDLLRAFATIEDDQMRREVLAIVRSAARLG 125 Query: 131 KK 132 +K Sbjct: 126 RK 127 >gi|163852933|ref|YP_001640976.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163664538|gb|ABY31905.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 135 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 3/120 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI++ R G+SQ LG L +TFQQ+QKYE GVNRVGASRL ++ VLE P+S FF+ Sbjct: 19 GQRIKMLRKSKGISQSVLGRALSVTFQQIQKYENGVNRVGASRLSEVARVLEVPVSTFFE 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + + +F+ P + L FI I+D ++R++++ LVRS E+ T Sbjct: 79 EGSGL---VEQGQKEAFEFLRVPGAVDLLNAFITIEDDRLRREVLALVRSATRREQDQGT 135 >gi|163850474|ref|YP_001638517.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|240137535|ref|YP_002962006.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254560007|ref|YP_003067102.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|163662079|gb|ABY29446.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|240007503|gb|ACS38729.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254267285|emb|CAX23117.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 142 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ +LE P+ Sbjct: 9 VDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLREIARLLEVPV 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S FF+ + E+ V F+ + L R F I+D ++R++++ +VRS Sbjct: 69 SAFFEEGDGAA---AQEQTEVFGFLRAHGAVDLLRAFATIEDDQMRREVLAIVRSAARLG 125 Query: 131 KK 132 +K Sbjct: 126 RK 127 >gi|329847359|ref|ZP_08262387.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842422|gb|EGF91991.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 116 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 74/114 (64%), Gaps = 4/114 (3%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-VSPT 79 +RR LGMSQE L E + +TFQQVQKYE+G NR+ AS+L I+ L++P+++FF+ T Sbjct: 1 MRRKFLGMSQEGLAEVIDLTFQQVQKYERGSNRISASKLYEIARALKAPVAYFFEGYGET 60 Query: 80 VCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + SE E V F+ T +G++L F +I K+R+K++ELVR + SE Sbjct: 61 EAVEGFSESESEQFVHGFLMTTEGIELAEAFPRIRSAKLRRKVLELVRVLGESE 114 >gi|110679288|ref|YP_682295.1| Cro/CI family transcriptional regulator putative [Roseobacter denitrificans OCh 114] gi|109455404|gb|ABG31609.1| transcriptional regulator, Cro/CI family, putative [Roseobacter denitrificans OCh 114] Length = 125 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 75/116 (64%), Gaps = 3/116 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD++VGKRIR RR ++GM+Q+KL EC+GI FQQ+QKYE G NRV ASRL I++ L+ + Sbjct: 5 VDVHVGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADALDVDV 64 Query: 71 SFFFD-VSPTVCSDISSEENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +FFF+ + D ++V D + + + L R + I + + R+++ EL R Sbjct: 65 AFFFEGLREEAGKDAPEPTSSVPADMMGDKEAMDLVRSYYAIPENQ-RRRLFELAR 119 >gi|329848346|ref|ZP_08263374.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843409|gb|EGF92978.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 115 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 73/110 (66%), Gaps = 3/110 (2%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD--VSP 78 +RR +G+SQ+ LG+ +G+TFQQVQKYE+G NR+ AS+L HI +VL+ PI +FFD Sbjct: 1 MRRKFMGISQQVLGDSIGLTFQQVQKYERGSNRISASKLWHIGQVLKVPIDYFFDGFAGG 60 Query: 79 TVCSDI-SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 D E + F++T +G++L F ++ K+R+K+++LV+++ Sbjct: 61 EAPEDAPGGTEAKINAFLTTTEGIELAEVFPKVSGPKLRRKVLDLVKALA 110 >gi|86140033|ref|ZP_01058597.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85823283|gb|EAQ43494.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 122 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G +Q++L E +GI FQQ+QKYE G NRV ASRL IS+ + Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGKTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDAM 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + P+SFFF+ D + D + + L L R + I + + R+++ EL R Sbjct: 61 DVPVSFFFEGLDEEAKD-GGKSAVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 116 >gi|163869008|ref|YP_001610238.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018685|emb|CAK02243.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 126 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 46/89 (51%), Positives = 68/89 (76%), Gaps = 7/89 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI +GKRIRLRR +L +SQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I+++ Sbjct: 11 KNPHSNDILIGKRIRLRREMLKISQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIADI 70 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDF 94 L+ I FF+ +DIS++E+ ++ + Sbjct: 71 LDISIFFFY-------ADISTKEHVLLPY 92 >gi|163868772|ref|YP_001609996.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018443|emb|CAK02001.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 119 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 7/79 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRL+R ILGMSQ+ LG+ LG++FQQ+QKYEKG+NRV A RL+ IS++L P+ Sbjct: 8 IDLFVGKKIRLKRKILGMSQKTLGDALGVSFQQIQKYEKGLNRVSAGRLKEISDILNVPV 67 Query: 71 SFFFDVSPTVCSDISSEEN 89 FF+ +DI + EN Sbjct: 68 FFFY-------TDIITNEN 79 >gi|114799059|ref|YP_759118.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739233|gb|ABI77358.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 143 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 10/121 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD VG+R+R RR++LG++Q+++ + LGI++QQ+QKYE G NR+ A RL I+EVLE Sbjct: 10 NQVDRQVGERMRRRRILLGLTQDQVADALGISYQQIQKYETGANRISAGRLAQIAEVLEV 69 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +FF V P S V++ + R F +I+D +VR ++ L+RS+ Sbjct: 70 LPGWFFGV-PEAADAPGSSSRAVIELV---------RNFSRIEDERVRTHLMALMRSLSG 119 Query: 129 S 129 S Sbjct: 120 S 120 >gi|218532679|ref|YP_002423495.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218524982|gb|ACK85567.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 134 Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 4/117 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI + R G+SQ LG +G+TFQQVQKYE G+NRVGASRL I+ VL ++ FF Sbjct: 18 VGERIHVLRKSKGLSQTALGSAIGVTFQQVQKYENGMNRVGASRLSDIARVLGVSVAVFF 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + E+ + P + L R FI I+D ++R++++ LVRS E+ Sbjct: 78 EEGDAAA----PEKTEAFGLLHAPGAVDLLRAFITIEDDQLRREVLALVRSAARMEQ 130 >gi|114328663|ref|YP_745820.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316837|gb|ABI62897.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 184 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 18/139 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG RIR RR++LG+SQ++L + +G+T+QQ KYE+G+NR+ A RL IS VL PIS+F Sbjct: 53 HVGNRIRERRVMLGLSQQQLAQMIGVTYQQAHKYERGLNRISAGRLYQISHVLNVPISWF 112 Query: 74 FD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS--- 128 FD + + +D+++ + L+L R F ID+ K ++ + ++ R++ + Sbjct: 113 FDGFATESKTADLTTRQRMC---------LELARNFAAIDNEKHQEALSQMARALAAQSV 163 Query: 129 ----SEKKYRTIEEECMVE 143 ++ Y T EE E Sbjct: 164 ANKMAQDGYATALEESREE 182 >gi|163849608|ref|YP_001637651.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163661213|gb|ABY28580.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 134 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 4/126 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D VG+RI++ R G++Q LG+ +G+TFQQVQKYE G+NRVGASRL I+ V Sbjct: 9 KRATDLDRLVGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLSDIARV 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE +S F+D D + V F+ T + L R F +I+D ++R++++ +VR+ Sbjct: 69 LEVRVSSFYDGDEGEGEDRA----EVFGFLRTHGAIDLLRAFSEIEDDQLRREVLAIVRT 124 Query: 126 IVSSEK 131 + E+ Sbjct: 125 VARVEQ 130 >gi|23013262|ref|ZP_00053178.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 118 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 13/117 (11%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD--------VSPT 79 MSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ P+SFFFD SP Sbjct: 1 MSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVLDVPVSFFFDDMGEDAQSSSPA 60 Query: 80 V-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 ++ + D ++ + L+L R + I D VR+K EL +++ S+K Sbjct: 61 AVIKGEAVTTAASPGDERDPMAKRETLELVRAYYSITDESVRRKAYELAKTLGGSDK 117 >gi|163869143|ref|YP_001610382.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018829|emb|CAK02387.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/113 (47%), Positives = 72/113 (63%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR L MSQ LG LGI+FQQVQKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLFVGKKIRLRRKRLKMSQTTLGNALGISFQQVQKYEKGLNRVSAGRLMEISDILNVPI 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T +SS + + IS + QL + F + +K R I++L+ Sbjct: 68 SFFYADIITKQHALSSHD----EVISNTEEYQLLKKFRVLTTIKKR-AILQLL 115 >gi|163794400|ref|ZP_02188372.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] gi|159180568|gb|EDP65089.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] Length = 157 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/135 (42%), Positives = 88/135 (65%), Gaps = 17/135 (12%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D++VG+R+RLRR +LGMSQE+LG+ L ITFQQVQKYE+G NR+ ASRL I ++L+ Sbjct: 21 NPIDVHVGRRVRLRRTLLGMSQEQLGDALNITFQQVQKYERGSNRISASRLWDIGQILDV 80 Query: 69 PISFFFDVSPTVCSDISSE--------------ENNVMDFISTPDGLQLNRYFIQIDDVK 114 P+SFFFD + D ++ E N D ++ + L+L R + I + Sbjct: 81 PVSFFFD---DISDDTAAHSPRRMKAGGAKDEYEENPADPMARRETLELVRAYYSIKNPN 137 Query: 115 VRQKIIELVRSIVSS 129 +R++I E+V+S+ ++ Sbjct: 138 LRKRITEMVKSVATA 152 >gi|126735102|ref|ZP_01750848.1| putative Cro/CI transcriptional regulator [Roseobacter sp. CCS2] gi|126715657|gb|EBA12522.1| putative Cro/CI transcriptional regulator [Roseobacter sp. CCS2] Length = 123 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 79/119 (66%), Gaps = 3/119 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGKRIR RR + G +Q++L E +GI FQQ+QKYE G+NRV ASRL I++VL Sbjct: 1 MKHPVDIHVGKRIRHRRWMNGTTQQQLAEAVGIKFQQIQKYETGMNRVSASRLWDIAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +SFFF+ +D+ + +++ D ++ + L L R + I + + R+++ +L R Sbjct: 61 GVNVSFFFE-GLDAQTDLDANNSDMPGDILTDKEALDLLRSYYAIPENQ-RRRLFDLAR 117 >gi|240851449|ref|YP_002972836.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268572|gb|ACS52159.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 118 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 14/99 (14%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI+VGK+IR RR +G+SQEKLG+ +G++FQQ+QKYE G NRVGA RLQ I+ + Sbjct: 4 KTPHLNDISVGKKIRCRRKYMGISQEKLGKKIGVSFQQIQKYENGSNRVGAGRLQEIANI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTP--DGLQ 102 L+ ISFF+ +DIS + N IS P +GL Sbjct: 64 LDVDISFFY-------TDISEKRN-----ISYPYNEGLH 90 >gi|148284085|ref|YP_001248175.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] gi|146739524|emb|CAM79234.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] Length = 146 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 87/142 (61%), Gaps = 19/142 (13%) Query: 8 PNP--------VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 PNP +D+ V KR+++RR+ILG+SQ+KL E + ++ QQ+QKYEK NR+ + +L Sbjct: 5 PNPNSNTKVDSIDLYVSKRLKMRRVILGLSQKKLAEAVDVSIQQIQKYEKSTNRISSGKL 64 Query: 60 QHISEVLESPISFFFD--VSPTVCSD-------ISSEENNVM--DFISTPDGLQLNRYFI 108 ++ +L+ PI +FF+ S T C + + ++ N + D ++ + L L + F Sbjct: 65 YSLANLLKVPIGYFFENASSYTDCKNNVNTISIFAEDQENFLSDDTVTEKEVLNLIKAFN 124 Query: 109 QIDDVKVRQKIIELVRSIVSSE 130 ++ + VR+KII+LV+SI + E Sbjct: 125 EVKNSHVRKKIIDLVKSIKAME 146 >gi|189184272|ref|YP_001938057.1| hypothetical protein OTT_1365 [Orientia tsutsugamushi str. Ikeda] gi|189181043|dbj|BAG40823.1| hypothetical protein OTT_1365 [Orientia tsutsugamushi str. Ikeda] Length = 146 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 87/142 (61%), Gaps = 19/142 (13%) Query: 8 PNP--------VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 PNP +D+ V KR+++RR+ILG+SQ+KL E + ++ QQ+QKYEK NR+ + +L Sbjct: 5 PNPNSNTKVDSIDLYVSKRLKMRRVILGLSQKKLAEAVDVSIQQIQKYEKSTNRISSGKL 64 Query: 60 QHISEVLESPISFFFD--VSPTVCSD-------ISSEENNVM--DFISTPDGLQLNRYFI 108 ++ +L+ PI +FF+ S T C + + ++ N + D ++ + L L + F Sbjct: 65 YSLANLLKVPIGYFFENASSYTDCKNNVNTISVFAEDQENFLSDDTVTEKEVLNLIKAFN 124 Query: 109 QIDDVKVRQKIIELVRSIVSSE 130 ++ + VR+KII+LV+SI + E Sbjct: 125 EVKNSHVRKKIIDLVKSIKAME 146 >gi|83312661|ref|YP_422925.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82947502|dbj|BAE52366.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 121 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 72/111 (64%), Gaps = 9/111 (8%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-VSPTVCSD- 83 +G+SQE LGE LG+TFQQ+QKYE+G NR+GASRL +S LE P+ +F+D +SP V + Sbjct: 1 MGLSQEALGEALGLTFQQIQKYERGANRIGASRLFDLSRALEVPVEYFYDEMSPDVMAAS 60 Query: 84 ----ISSEENNV---MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + + + V +D +S + L L R + +I D VR+++ EL R++ Sbjct: 61 PRHMVRATQEPVPQQIDPMSKRETLDLVRTYYKIGDPNVRKRVYELARALA 111 >gi|310816677|ref|YP_003964641.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308755412|gb|ADO43341.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 119 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 5/118 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD+ VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+ L Sbjct: 1 MAHTVDVYVGKRIRQRRWLIGMTQQQLAEHVGIKFQQIQKYETGANRVSASRLWEIAHAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + IS+F++ + ++E++ + + + + ++L R + I + + R+ I EL R Sbjct: 61 GTSISYFYE----GMNAAATEDSTLNEELWGREAMELLRSYYAIPEDQ-RRHIFELAR 113 >gi|163869006|ref|YP_001610236.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018683|emb|CAK02241.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 142 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/89 (49%), Positives = 68/89 (76%), Gaps = 7/89 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR RR +L MSQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I+++ Sbjct: 11 KNPHFNDISIGRKIRFRREMLKMSQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIADI 70 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDF 94 L+ I FF+ +DIS++E+ ++ + Sbjct: 71 LDISIFFFY-------ADISTKEHVLLPY 92 >gi|114570052|ref|YP_756732.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114340514|gb|ABI65794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 136 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 77/128 (60%), Gaps = 1/128 (0%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P +D +VG R+R+ R+ +SQE LGE G++F Q+QKYE+G R+ ASRL ++ Sbjct: 7 GHQFPLQIDQHVGARLRVGRIEFCLSQEALGERFGVSFHQIQKYERGAYRISASRLFVLA 66 Query: 64 EVLESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L P+ FFFD + SE+ ++ FI++ G+ L F +I + ++RQ++I+L Sbjct: 67 NALLVPVQFFFDGLDDDGPQSAGSEDTDLYRFIASSAGVTLALAFSRIGNHEIRQRVIDL 126 Query: 123 VRSIVSSE 130 V ++ + Sbjct: 127 VHALAKQD 134 >gi|254559382|ref|YP_003066477.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266660|emb|CAX22437.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 158 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 4/121 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG+RI++ R G++Q LG+ +G+TFQQVQKYE G+NRVGASRL I+ VLE + Sbjct: 38 LDRLVGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLSDIARVLEVRV 97 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F+D D + V F+ T + L R F +I+D ++R++++ +VR++ E Sbjct: 98 SSFYDGDEGEGEDRAE----VFGFLRTHGAIDLLRAFSEIEDDQLRREVLAIVRTVARVE 153 Query: 131 K 131 + Sbjct: 154 Q 154 >gi|240850955|ref|YP_002972355.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268078|gb|ACS51666.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 119 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 41/68 (60%), Positives = 55/68 (80%), Gaps = 1/68 (1%) Query: 8 PN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PN +D+ VGK+IR RR +L MSQ+ LG LG+TFQQ+QKYEKG+NRV A RL+ IS++L Sbjct: 4 PNLNIDLFVGKKIRFRRKMLKMSQKTLGHHLGVTFQQIQKYEKGLNRVSAGRLKEISDIL 63 Query: 67 ESPISFFF 74 + PI+FF+ Sbjct: 64 DVPIAFFY 71 >gi|163869009|ref|YP_001610239.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018686|emb|CAK02244.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 146 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 43/89 (48%), Positives = 68/89 (76%), Gaps = 7/89 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR RR +L +SQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I+++ Sbjct: 11 KNPHSNDISIGRKIRFRRKMLKISQKELGDRLGVTFQQIQKYEKGLNRVGAGRLQEIADI 70 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDF 94 L+ I FF+ +DIS++E+ ++ + Sbjct: 71 LDISIFFFY-------ADISTKEHVLLPY 92 >gi|126727971|ref|ZP_01743794.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126702744|gb|EBA01854.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 122 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 2/119 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKR+R RR ++GM+Q++L E +GI FQQ+QKYE G+NR+ ASRL I+E L Sbjct: 1 MKHPVDVHVGKRVRHRRWMVGMTQQQLAEKVGIKFQQIQKYETGMNRISASRLWAIAENL 60 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ISFFF+ + + E + S + L+L R + I + + R+++ EL R Sbjct: 61 DVQISFFFEGLEGNEKASDQKFEGMPENVFSDKEALELVRCYYAIPENQ-RKRLFELAR 118 >gi|163869148|ref|YP_001610388.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018835|emb|CAK02393.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 40/64 (62%), Positives = 51/64 (79%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLLVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPI 67 Query: 71 SFFF 74 SFF+ Sbjct: 68 SFFY 71 >gi|163869007|ref|YP_001610237.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018684|emb|CAK02242.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 135 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/89 (50%), Positives = 67/89 (75%), Gaps = 7/89 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI +GKRIRLRR +L +SQ++LG+ L +TFQQ+QKYEKG+NRVGA RLQ I+++ Sbjct: 4 KNPHSNDILIGKRIRLRREMLKISQKQLGDRLSVTFQQIQKYEKGLNRVGAGRLQEIADI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDF 94 L+ I FF+ +DIS++E+ ++ + Sbjct: 64 LDISIFFFY-------ADISTKEHVLLPY 85 >gi|163868802|ref|YP_001610026.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018473|emb|CAK02031.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 96 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 39/68 (57%), Positives = 55/68 (80%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGKRIR RR +L MSQ+ LG+ LG++FQQ+QKYEKG+NRV A RL+ IS++L P+ Sbjct: 8 IDLFVGKRIRFRRKMLKMSQKTLGQHLGVSFQQIQKYEKGLNRVSAGRLKEISDILNVPL 67 Query: 71 SFFFDVSP 78 +FF+ +S Sbjct: 68 AFFYTISS 75 >gi|254295424|ref|YP_003061447.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043955|gb|ACT60750.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 141 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 5/125 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+PN +D +VG+R+R RR L SQEKLGE LG+TFQQ+QKYEKGVNR+ A RL +S V Sbjct: 5 KLPNSIDKHVGRRVRWRRRELNFSQEKLGELLGLTFQQIQKYEKGVNRISAGRLFEMSRV 64 Query: 66 LESPISFFF----DVSPTVCSDIS-SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 LE+ I +FF ++ + + S+++ + + D + L F I D K+RQ I+ Sbjct: 65 LETTIGYFFMGVEEMDEAMNRSFAESDKDQALTGLIDADAVDLVVAFQSIPDPKLRQSIL 124 Query: 121 ELVRS 125 +VR+ Sbjct: 125 TMVRN 129 >gi|170746516|ref|YP_001752776.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653038|gb|ACB22093.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 146 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 6/117 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG RI R G+SQ L LG++FQQVQKYE G NRVGA RLQ I+E L P+ Sbjct: 14 IDHGVGSRIAFLRAANGLSQSALASALGVSFQQVQKYETGKNRVGAGRLQAIAERLGVPV 73 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 S FF+ P +D + ++L R + QI D ++R+ ++ LV+S Sbjct: 74 SSFFEPEPEATTDSGPA------LLRVAGAVELLRAYNQIADDQMRRDVLSLVKSAA 124 >gi|222082679|ref|YP_002542044.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727358|gb|ACM30447.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 140 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 7/122 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD VG++IRL R MSQE L +CLG+TFQQVQKYE G NRV AS+L I+ L+ Sbjct: 21 HPVDTYVGQQIRLARKQQRMSQEALAKCLGVTFQQVQKYEIGANRVSASKLFEIATALQR 80 Query: 69 PISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S+FF+ +D+ E V+ + T +G +L + F+ VR+ ++ L+ Sbjct: 81 PVSYFFEGFANAAERDPTDVERESVTVIQY--TAEGRRLAKAFVAAMP-DVRKAVVGLLE 137 Query: 125 SI 126 S+ Sbjct: 138 SM 139 >gi|317016318|gb|ADU85831.1| transcriptional regulator [Bartonella sp. TT0105] Length = 118 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 43/77 (55%), Positives = 58/77 (75%), Gaps = 7/77 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D++VGK+IRLRR +L MSQ++LGE LG+TFQQ+QKYEK NR+GA RLQ I+++ IS Sbjct: 10 DLSVGKKIRLRREMLKMSQKQLGELLGVTFQQIQKYEKATNRIGAGRLQEIADIFNVDIS 69 Query: 72 FFFDVSPTVCSDISSEE 88 FF+ +DIS E+ Sbjct: 70 FFY-------TDISKEK 79 >gi|83313460|ref|YP_423724.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948301|dbj|BAE53165.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 127 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 15/121 (12%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +RLRR +LG+SQEKLGE +G+TFQQVQKYE+G NR+ SRL +S LE PIS+FFD P Sbjct: 1 MRLRRTLLGLSQEKLGELIGLTFQQVQKYERGANRISCSRLFDLSRSLEVPISYFFDDMP 60 Query: 79 TVCSDISS---------EENNVMDFISTP----DGLQLNRYFIQIDDVKVRQKIIELVRS 125 +S EE + + P + L+L R + I D VR++I +L ++ Sbjct: 61 EETKGLSPVQMVREPPKEEPPAAE--ADPRLRRETLELVRNYYSIVDPDVRRRIYDLAKA 118 Query: 126 I 126 + Sbjct: 119 L 119 >gi|240851038|ref|YP_002972438.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268161|gb|ACS51749.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 126 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 38/63 (60%), Positives = 53/63 (84%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI++GK+IR RR ++G SQ++LG LG+TFQQ+QKYEKG+NRV A RLQ I+ +L+ P+S Sbjct: 10 DISLGKKIRFRRNLMGFSQKQLGSHLGVTFQQIQKYEKGLNRVSARRLQEIAHILDVPVS 69 Query: 72 FFF 74 FF+ Sbjct: 70 FFY 72 >gi|163868821|ref|YP_001610047.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018494|emb|CAK02052.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/94 (48%), Positives = 67/94 (71%), Gaps = 7/94 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++GK+IR +R I+G+SQ++LG LG+TFQQ+QKYEKG+NRV A LQ I++ Sbjct: 7 KNPHFYDISLGKKIRFKRKIMGISQKQLGNHLGVTFQQIQKYEKGLNRVSARCLQEIADR 66 Query: 66 LESPISFFFDVSP----TVC---SDISSEENNVM 92 L+ PISFF+ S ++C ISS+E ++ Sbjct: 67 LDVPISFFYADSAQKENSLCYYDDQISSKEEYLL 100 >gi|315499301|ref|YP_004088105.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315417313|gb|ADU13954.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 125 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD++VG RIR RR +GMSQ L L +TFQQVQKYE+G NR+ AS++ + L Sbjct: 5 NKVDVHVGHRIRSRRKEIGMSQTDLANHLSLTFQQVQKYERGFNRISASKMHDAARALGV 64 Query: 69 PISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 I +FF+ + D S E +V F+ T +G +L+ +F ++ R+ ++ LVR +V Sbjct: 65 HIEYFFEGLDNETELDRSESEASVTQFLLTREGAELSSHFSKL-SANQRKGVLALVRMLV 123 >gi|240851130|ref|YP_002972532.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268253|gb|ACS51841.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 117 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/84 (52%), Positives = 61/84 (72%), Gaps = 7/84 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +DI +GKRIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG NRV A L I++ Sbjct: 4 KNPNFIDILIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSAGCLLEIAQK 63 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L+ PISFF+ +DI+++EN Sbjct: 64 LDVPISFFY-------ADITTKEN 80 >gi|163869150|ref|YP_001610390.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018837|emb|CAK02395.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 157 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 40/64 (62%), Positives = 51/64 (79%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 44 IDLLVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPI 103 Query: 71 SFFF 74 SFF+ Sbjct: 104 SFFY 107 >gi|240851232|ref|YP_002972635.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268355|gb|ACS51943.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 116 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 38/64 (59%), Positives = 53/64 (82%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GK+IRL+R +L MSQ+ LG+ LG+TFQQ+QKYEKG+NRV A RL IS++L P+ Sbjct: 8 IDLFIGKKIRLKRKMLKMSQKTLGQHLGVTFQQIQKYEKGLNRVSAGRLMEISDILNVPL 67 Query: 71 SFFF 74 SFF+ Sbjct: 68 SFFY 71 >gi|144901303|emb|CAM78167.1| transcriptional regulator, Cro/CI family [Magnetospirillum gryphiswaldense MSR-1] Length = 131 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 78/123 (63%), Gaps = 10/123 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D +VG RIR RR++LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I++VL Sbjct: 17 NDTDRHVGTRIRERRIMLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLYEIAQVLGV 76 Query: 69 PISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 P+S+FF+ + +D+++ + L+L R F I + K ++ + ++ R++ Sbjct: 77 PVSYFFEGLDNQRATDLTARQRMC---------LELARNFSSIQNEKHQEALSQMARALA 127 Query: 128 SSE 130 ++E Sbjct: 128 AAE 130 >gi|163868976|ref|YP_001610205.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018652|emb|CAK02210.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 135 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 41/86 (47%), Positives = 65/86 (75%), Gaps = 2/86 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ +D+++GKRIR RRM + +SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 11 KNPHFIDVSIGKRIRHRRMTMWLSQKTLGNFLGVSFQQIQKYEKGLNRVSAKCLLEIAQK 70 Query: 66 LESPISFFFDVSPTVCSDISSEENNV 91 L+ PISFF++ + +D++++E+ V Sbjct: 71 LQVPISFFYE--DLLATDLATKEDLV 94 >gi|240851233|ref|YP_002972636.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268356|gb|ACS51944.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 38/64 (59%), Positives = 52/64 (81%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GK+IRL+R +L MSQ LG+ LG+TFQQ+QKYEKG+NRV A RL IS++L P+ Sbjct: 8 IDLFIGKKIRLKRKMLKMSQTTLGQHLGVTFQQIQKYEKGLNRVSAGRLMEISDILNVPL 67 Query: 71 SFFF 74 SFF+ Sbjct: 68 SFFY 71 >gi|240851231|ref|YP_002972634.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268354|gb|ACS51942.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 38/64 (59%), Positives = 52/64 (81%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GK+IRL+R +L MSQ LG+ LG+TFQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLFIGKKIRLKRKMLKMSQTTLGQHLGVTFQQIQKYEKGLNRVSAGRLMEISDILNVPI 67 Query: 71 SFFF 74 +FF+ Sbjct: 68 TFFY 71 >gi|163869145|ref|YP_001610384.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018831|emb|CAK02389.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 82 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 41/64 (64%), Positives = 50/64 (78%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LGI+FQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLFVGKKIRLRRQMLKMSQTTLGNALGISFQQIQKYEKGLNRVSAGRLMEISDILTVPI 67 Query: 71 SFFF 74 SFF Sbjct: 68 SFFL 71 >gi|83594927|ref|YP_428679.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577841|gb|ABC24392.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 156 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 16/140 (11%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G K P+PVD++VG+R+RLRR +LGMSQE+L +G+TFQQ+QKYE+G NRV ASRL I Sbjct: 13 GINKSPDPVDVHVGRRLRLRRTLLGMSQEQLANAVGVTFQQIQKYERGSNRVSASRLYDI 72 Query: 63 SEVLESPISFFF-DVSPTVCS--------DISS---EENNVMDFISTP----DGLQLNRY 106 S+VL P++FFF D+ V S DI+ E + + P + L+L R Sbjct: 73 SKVLGVPVAFFFEDIGDEVTSARLAPIVPDITGSGLSEPAIPAYEQDPLQKNETLELIRA 132 Query: 107 FIQIDDVKVRQKIIELVRSI 126 + ++ VR++ ++L++S+ Sbjct: 133 YWRLPTDTVRKRALDLLKSL 152 >gi|240851106|ref|YP_002972508.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268229|gb|ACS51817.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 157 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/85 (51%), Positives = 64/85 (75%), Gaps = 3/85 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ +DI +GKRIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 38 KNPHFIDILIGKRIRHRRISMGLSQKALGSHLGVSFQQIQKYEKGLNRVSAKCLLEIAQK 97 Query: 66 LESPISFFF-DVSPTVCSDISSEEN 89 LE PISFF+ D++ + D+S++E Sbjct: 98 LEVPISFFYADIA--IKEDLSTKET 120 >gi|86360041|ref|YP_471931.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86284143|gb|ABC93204.1| probable transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 114 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/97 (46%), Positives = 67/97 (69%), Gaps = 5/97 (5%) Query: 39 ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS---PTVCSDISSEE--NNVMD 93 +TFQQVQKYEKG+NR+GASRLQ I+EVL + SFFF+ + P ++ + + V + Sbjct: 1 MTFQQVQKYEKGINRIGASRLQRIAEVLHTSPSFFFEQNESQPLSLQGLALPDGADPVAE 60 Query: 94 FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F+ T +GL LNR F++I D +R+ II LV+++ +E Sbjct: 61 FLRTKEGLVLNRAFLKIADPDIRETIIALVKAMAQAE 97 >gi|83591618|ref|YP_425370.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574532|gb|ABC21083.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 145 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 8/136 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G + D +VGKRIR RR++LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I Sbjct: 12 GPTNRASEADRHVGKRIRERRVMLGLSQQQMADMIGVTYQQAHKYERGINRISAGRLFEI 71 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++VL P+++FFD S+ S + L+L R F I + + ++ + +L Sbjct: 72 AQVLHVPVNYFFDGLDDEASETLSPRQRMC--------LELARNFAMIQNERHQEALSQL 123 Query: 123 VRSIVSSEKKYRTIEE 138 R++ + IEE Sbjct: 124 ARALAAQVSVVEVIEE 139 >gi|83859888|ref|ZP_00953408.1| DNA-binding protein, putative [Oceanicaulis alexandrii HTCC2633] gi|83852247|gb|EAP90101.1| DNA-binding protein, putative [Oceanicaulis alexandrii HTCC2633] Length = 130 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 81/121 (66%), Gaps = 2/121 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D +VGKRIR RR +LG++Q++L + +GI FQQ+QKYE G NRV ASRL ++E L Sbjct: 1 MTNAIDHHVGKRIRRRRRLLGLTQQQLAQSVGIRFQQIQKYESGANRVSASRLFELAEAL 60 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + P+ +F++ + T S EN D +S + L L R + ++++ + R++++EL RS Sbjct: 61 DVPVQYFYEGLQGTGESAAPEGENVAADVLSQKETLDLVRAYYKLNE-RPRRRLLELARS 119 Query: 126 I 126 + Sbjct: 120 L 120 >gi|163868997|ref|YP_001610227.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018674|emb|CAK02232.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 2/84 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQVQKYEKG+NRV A L I++ Sbjct: 11 KNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQVQKYEKGLNRVSAGCLLEIAQK 70 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L+ PISFF+ + + +DI+++EN Sbjct: 71 LQVPISFFY--ADLLTTDIATKEN 92 >gi|163869151|ref|YP_001610391.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018838|emb|CAK02396.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 39/64 (60%), Positives = 50/64 (78%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L I Sbjct: 8 IDLFVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVSI 67 Query: 71 SFFF 74 SFF+ Sbjct: 68 SFFY 71 >gi|163868981|ref|YP_001610211.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018658|emb|CAK02216.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 62/84 (73%), Gaps = 2/84 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 11 KNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQK 70 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L+ PISFF+ + + +DI+++EN Sbjct: 71 LQVPISFFY--ADLLTADIATKEN 92 >gi|163868999|ref|YP_001610229.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018676|emb|CAK02234.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 62/84 (73%), Gaps = 2/84 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 11 KNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQK 70 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L+ PISFF+ + + +DI+++EN Sbjct: 71 LQVPISFFY--ADLLTTDIATKEN 92 >gi|163868998|ref|YP_001610228.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018675|emb|CAK02233.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 130 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 62/84 (73%), Gaps = 2/84 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 11 KNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQK 70 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L+ PISFF+ + + +DI+++EN Sbjct: 71 LQVPISFFY--ADLLTTDIATKEN 92 >gi|218510909|ref|ZP_03508787.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 157 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 82/131 (62%), Gaps = 3/131 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +++ +PVDI+VG+++R+RR+ +SQ +LG+ +G+++QQVQKYE G NR+ AS L I+ Sbjct: 24 SEQASHPVDIHVGQQLRIRRVHSNLSQSELGQKVGLSYQQVQKYESGKNRISASMLYEIA 83 Query: 64 EVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P+ FFD P + I+ E + + F++T +G + +++ K+R + + Sbjct: 84 GGLNVPVGCFFDGLPQPGESATIAPEADERIAFLATAEGRRFVEEILRLPP-KLRTRTLA 142 Query: 122 LVRSIVSSEKK 132 ++R+I E K Sbjct: 143 VIRAIAGDEDK 153 >gi|197103372|ref|YP_002128750.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480648|gb|ACG80175.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 145 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/129 (41%), Positives = 85/129 (65%), Gaps = 5/129 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG+R+RLRR LG+SQ L + LG+TFQQ+QKYE+G NR+ AS+L I+++LE Sbjct: 5 PNPVDVHVGRRVRLRRRELGVSQAWLADRLGLTFQQIQKYERGANRISASKLYAIAKLLE 64 Query: 68 SPISFFFD-----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 PI++FF+ +PT + V + ++ P+G QL F+ I +R+ + EL Sbjct: 65 VPITYFFEGLDDPATPTGRQYAQAFTGVVEELLAEPNGPQLAEAFLSIRRRSIRKGLAEL 124 Query: 123 VRSIVSSEK 131 +I ++++ Sbjct: 125 APAIAANDQ 133 >gi|188581972|ref|YP_001925417.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179345470|gb|ACB80882.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 133 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 6/127 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K +D+ +G+RI R+ MSQ +LG +G+TFQQVQKYEKG NRVG RLQ I+ Sbjct: 5 SNKAATDIDVRIGQRIAALRVNRRMSQTELGTAIGVTFQQVQKYEKGRNRVGGGRLQQIA 64 Query: 64 EVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L +S F+ D P + V D + P G+++ R + + R I+ + Sbjct: 65 TALGVRVSDFYGDEQPA-----GGDATVVFDLLRDPHGIRIARALQSANSAEARNAIVGV 119 Query: 123 VRSIVSS 129 V ++ SS Sbjct: 120 VEAVASS 126 >gi|167647751|ref|YP_001685414.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350181|gb|ABZ72916.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 129 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 8/124 (6%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D+ VG RIR++R L +SQ+ L + LG+TFQQVQKYE+G NRV AS L I+ L+ Sbjct: 7 PDPIDVAVGTRIRVQRRHLKISQDDLAQVLGLTFQQVQKYERGTNRVSASMLVRIAAKLQ 66 Query: 68 SPISFFFDVSPTVCSDISSEENNVM-DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + V D+ +E++ M +STP + L R + Q K R+ I+ + R++ Sbjct: 67 TTVGSL------VGEDVVAEQDVAMLTALSTPGAIDLLRAYGQATP-KGRKAILNVARTL 119 Query: 127 VSSE 130 V + Sbjct: 120 VEPD 123 >gi|209964814|ref|YP_002297729.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209958280|gb|ACI98916.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 232 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 37/65 (56%), Positives = 49/65 (75%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +V RIRLRR +LGMSQ L LGITFQQVQKYE+G NRV +L ++E+L+ P+ Sbjct: 17 IESHVASRIRLRRGLLGMSQSDLARTLGITFQQVQKYERGSNRVSVGKLYRLAEILDVPL 76 Query: 71 SFFFD 75 +FFFD Sbjct: 77 TFFFD 81 >gi|83309880|ref|YP_420144.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944721|dbj|BAE49585.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 151 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 76/123 (61%), Gaps = 10/123 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D +VG RIR RR++LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I++VL Sbjct: 38 NDTDRHVGSRIRERRIMLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLFEIAQVLGV 97 Query: 69 PISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 P+ FF++ + SD+S+ + L+L R F I + + ++ + +L R++ Sbjct: 98 PVGFFYEGLENRRGSDLSARQRMC---------LELARNFTSITNERHQEALSQLARALA 148 Query: 128 SSE 130 + + Sbjct: 149 AED 151 >gi|218674449|ref|ZP_03524118.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 174 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 15/135 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +++ +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ Sbjct: 33 RELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELAN 92 Query: 65 VLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-----KV 115 L+ P+S FF+ P T I +E + + +IST +G +L IDDV +V Sbjct: 93 CLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRV 146 Query: 116 RQKIIELVRSIVSSE 130 R +++ LV SIV E Sbjct: 147 RSRVVALVSSIVEEE 161 >gi|218681208|ref|ZP_03529105.1| putative transcriptional regulator protein [Rhizobium etli CIAT 894] Length = 170 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 15/135 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +++ +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ Sbjct: 33 RELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELAN 92 Query: 65 VLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-----KV 115 L+ P+S FF+ P T I +E + + +IST +G +L IDDV +V Sbjct: 93 CLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRV 146 Query: 116 RQKIIELVRSIVSSE 130 R +++ LV SIV E Sbjct: 147 RSRVVALVSSIVDEE 161 >gi|83944525|ref|ZP_00956977.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83844631|gb|EAP82516.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 124 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 2/119 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+ VD++VG+RIR RR + GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+ L Sbjct: 1 MPHKVDVHVGQRIRQRRWLTGMTQQRLAELVGIKFQQIQKYETGANRVSASRLWDIAFAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +S FF+ +N+ D + + L R + I + + R+++ EL R Sbjct: 61 NVDVSHFFEGLEAEKPQPEKALDNIPADLSGDKEAMDLIRSYYAIPENQ-RRRLFELAR 118 >gi|254449883|ref|ZP_05063320.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198264289|gb|EDY88559.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 122 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 6/120 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR + G +Q+ L + +GI FQQ+QKYE G+NRV ASRL I+ L Sbjct: 1 MKHPVDVHVGKRIRHRRWVSGTTQQHLADQVGIKFQQIQKYETGMNRVSASRLWDIAHAL 60 Query: 67 ESPISFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++FFF+ + DI + D ++ + L L R + I + + R+++ +L R Sbjct: 61 GVEVAFFFEGLEGNLIGKDIGGMPS---DILTDKEALDLLRSYYAIPENQ-RRRLFDLAR 116 >gi|190894160|ref|YP_001984454.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190699821|gb|ACE93904.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 170 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 15/135 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +++ +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ Sbjct: 33 RELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELAN 92 Query: 65 VLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-----KV 115 L+ P+S FF+ P T I +E + + +IST +G +L IDDV +V Sbjct: 93 CLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRV 146 Query: 116 RQKIIELVRSIVSSE 130 R +++ LV SIV E Sbjct: 147 RSRVVALVSSIVDEE 161 >gi|46201107|ref|ZP_00055727.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 127 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 15/121 (12%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD--- 75 +RLRR +LG+SQEKLGE +G+TFQQVQKYE+G NR+ SRL +S LE IS+FF+ Sbjct: 1 MRLRRTLLGLSQEKLGEMIGLTFQQVQKYERGANRISCSRLFDLSRSLEVTISYFFEDMA 60 Query: 76 -----VSPT-VCSDISSEENNVMDFISTP----DGLQLNRYFIQIDDVKVRQKIIELVRS 125 +SP + + EE + + P + L+L R + I D VR++I +L ++ Sbjct: 61 EETKGLSPVQMVREPPKEEPAAAE--ADPRLRRETLELVRNYYSITDPDVRRRIYDLAKA 118 Query: 126 I 126 + Sbjct: 119 L 119 >gi|56697146|ref|YP_167509.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678883|gb|AAV95549.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 134 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 7/90 (7%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD VG+RIR RR LG+SQ +LG +G+ FQQVQKYE G NRV ASRL I+EVL+ Sbjct: 2 DTVDTVVGRRIRARRSALGLSQAELGRAVGVRFQQVQKYESGANRVSASRLWAIAEVLDV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTP 98 IS FF+ I + ++ V+D P Sbjct: 62 HISHFFE-------GIQAPDSGVIDGSDAP 84 >gi|21492787|ref|NP_659862.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|21467212|gb|AAM54875.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 161 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 15/131 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 28 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 87 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-----KVRQKI 119 P+S FF+ P T I +E + + +IST +G +L IDDV +VR ++ Sbjct: 88 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRV 141 Query: 120 IELVRSIVSSE 130 + LV SIV E Sbjct: 142 VALVSSIVDEE 152 >gi|190894008|ref|YP_001984302.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190699669|gb|ACE93752.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 246 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 15/135 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +++ +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ Sbjct: 113 RELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELAN 172 Query: 65 VLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-----KV 115 L+ P+S FF+ P T I +E + + +IST +G +L IDDV +V Sbjct: 173 CLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRV 226 Query: 116 RQKIIELVRSIVSSE 130 R +++ LV SIV E Sbjct: 227 RSRVVALVSSIVDEE 241 >gi|21492894|ref|NP_659969.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|190894068|ref|YP_001984362.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|21467319|gb|AAM54982.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|190699729|gb|ACE93812.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 254 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 15/135 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +++ +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ Sbjct: 113 RELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELAN 172 Query: 65 VLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-----KV 115 L+ P+S FF+ P T I +E + + +IST +G +L IDDV +V Sbjct: 173 CLKIPVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRV 226 Query: 116 RQKIIELVRSIVSSE 130 R +++ LV SIV E Sbjct: 227 RSRVVALVSSIVDEE 241 >gi|240851129|ref|YP_002972531.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268252|gb|ACS51840.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 7/84 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +DI +GKRIR RR+ + +SQ+ LG LG++FQQ+QKYEKG NRV L I++ Sbjct: 4 KNPNFIDILIGKRIRQRRIAMELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQK 63 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 LE P+SFF+ +D++++EN Sbjct: 64 LEVPMSFFY-------ADLATKEN 80 >gi|254419275|ref|ZP_05032999.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185452|gb|EDX80428.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 118 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 4/114 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG RI RR LG+SQ LG +G++ QQVQKYE G NR+ ASRL +++ L P+ Sbjct: 1 MDAVVGARIASRRTALGLSQTALGALIGVSCQQVQKYEGGQNRISASRLHNLALALGLPV 60 Query: 71 SFFFDVSPTVCSDISSEENNVM-DFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 FF P + E ++M +TP+G + F +I+D VRQ + LV Sbjct: 61 GAFF---PEPADEAEIPELSMMRTMAATPEGRAMAAGFSRIEDRAVRQALTRLV 111 >gi|254559380|ref|YP_003066475.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266658|emb|CAX22435.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 111 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 G+SQ LG +G++FQQ+QKYE G N VGA RL I+ VL P+S FF+ + Sbjct: 6 GLSQIALGIAIGVSFQQIQKYEIGANCVGAGRLSDIARVLGGPVSVFFEEGDAAA---AQ 62 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 E+ V D + P + L FI I+D ++R++++ LVR+ E+ + Sbjct: 63 EKTEVFDLLRAPGAVDLLNAFITIEDDRLRREVLALVRNAARMEQDH 109 >gi|190895203|ref|YP_001985496.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700864|gb|ACE94946.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 162 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 15/133 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD++VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 29 HPVDLHVGQQIRIRRMQSDVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 88 Query: 69 PISFFFD--VSPTVCSDI--SSEENNVMDFISTPDGLQLNRYFIQIDDV-----KVRQKI 119 P+S FF+ P D +++ ++ + +IST +G +L I+DV +VR ++ Sbjct: 89 PVSKFFEGLPDPETSQDAIHATKIDDRIAYISTAEGRRL------IEDVLLLPARVRSRV 142 Query: 120 IELVRSIVSSEKK 132 + LV SIV E K Sbjct: 143 VALVSSIVDEEMK 155 >gi|296532393|ref|ZP_06895122.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296267280|gb|EFH13176.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 144 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 7/118 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +VG RIR RR++LG+SQ++L +G+T+QQ KYE+G+NR+ A RL I+ VL P+ Sbjct: 26 ADRHVGMRIRERRLMLGLSQQQLASMIGVTYQQAHKYERGLNRISAGRLFEIATVLAVPV 85 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 S+FF+ + D S++ V + L+L R F ID+ + ++ + ++ R++ + Sbjct: 86 SWFFE---GLDEDGSTQPLGVRQRMC----LELARNFALIDNERHQEALSQMARALAA 136 >gi|218675040|ref|ZP_03524709.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 180 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 15/131 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 47 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 106 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-----KVRQKI 119 P+S FF+ P T +E + + +IST +G +L IDDV +VR ++ Sbjct: 107 PVSRFFEGLPDPETTQGQQFITEIDGKIAYISTAEGRRL------IDDVLLLSPRVRSRV 160 Query: 120 IELVRSIVSSE 130 + LV SIV E Sbjct: 161 VALVSSIVDEE 171 >gi|329851244|ref|ZP_08266001.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328840090|gb|EGF89662.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 152 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 63/98 (64%), Gaps = 12/98 (12%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D++VG+R+RL+R LG++Q L L ++FQQ+QKYE+G NR+ AS+L I+ L+ Sbjct: 21 HPIDLHVGERVRLKRKELGITQPALATQLKVSFQQLQKYERGFNRISASKLYEIAGALDV 80 Query: 69 PISFFFDVS-----------PTVCSDISSEENNVM-DF 94 PI +FFD + P V +++EE ++ DF Sbjct: 81 PIGYFFDGAKGTAAAASPKVPVVPETLTAEEARLLEDF 118 >gi|288960030|ref|YP_003450370.1| transcriptional regulator [Azospirillum sp. B510] gi|288912338|dbj|BAI73826.1| transcriptional regulator [Azospirillum sp. B510] Length = 196 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 18/127 (14%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD+ VG+R+R RM+ G+SQ + LG+TFQQ+QKYE+G NRV +SRL + + Sbjct: 44 NEVDVFVGQRLRELRMLAGLSQSDVASALGLTFQQLQKYERGFNRVSSSRLFTLGQFFRV 103 Query: 69 PISFFFD------------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 P+S FF+ V P + E+ N + + + L L RYF I D +R Sbjct: 104 PVSVFFEGLENREPVAEGGVRPAAGGE---EQENTLQ---SREALMLARYFQSIRDPHIR 157 Query: 117 QKIIELV 123 I EL Sbjct: 158 GAIRELA 164 >gi|114704610|ref|ZP_01437518.1| Transcriptional Regulator, XRE family protein [Fulvimarina pelagi HTCC2506] gi|114539395|gb|EAU42515.1| Transcriptional Regulator, XRE family protein [Fulvimarina pelagi HTCC2506] Length = 117 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 57/88 (64%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K + +D +VG +I+L R++ G+S+EKLG LGI++QQ+QKYE G NRV A RL I+ Sbjct: 3 DTKAASHIDKSVGAKIKLGRLMAGLSREKLGVQLGISWQQIQKYESGANRVSAGRLHQIA 62 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNV 91 +L I +FFD + SDI ++ Sbjct: 63 HILGREIQWFFDEADNEPSDIGPSPRDI 90 >gi|220926095|ref|YP_002501397.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950702|gb|ACL61094.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 121 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/78 (51%), Positives = 49/78 (62%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 KI VD VG RI R G+SQ LG +G+TFQQVQKYEKGVNRVGASRL+ + V Sbjct: 3 KITTDVDRAVGARITTLRKAKGLSQTALGAAIGVTFQQVQKYEKGVNRVGASRLRESARV 62 Query: 66 LESPISFFFDVSPTVCSD 83 L+ P++ F + D Sbjct: 63 LDVPVAALFGTEESQAGD 80 >gi|240851124|ref|YP_002972526.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268247|gb|ACS51835.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ +DI +GKRIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG NRV L I++ Sbjct: 4 KNPHFIDILIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQK 63 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 LE P++FF+ DIS++E Sbjct: 64 LEVPMNFFY-ADIVTKEDISTKET 86 >gi|197104103|ref|YP_002129480.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] gi|196477523|gb|ACG77051.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] Length = 136 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 73/124 (58%), Gaps = 2/124 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K P+P+DI +G +R+RR +GMSQE L E G++FQQ+QKYE G NR+ SRL I+ Sbjct: 5 STKAPDPMDIALGAAVRIRRRTIGMSQEALAEQCGVSFQQIQKYENGANRISFSRLVQIA 64 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L ++ DV + ++ + +++ + TP L+L + ++ + R ++ L+ Sbjct: 65 RALRCRVTDLMDVFDGPDRETAT-DLDLLTRMRTPGALELLAAYERLAP-EARSSLVSLL 122 Query: 124 RSIV 127 R++ Sbjct: 123 RTVA 126 >gi|254420054|ref|ZP_05033778.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186231|gb|EDX81207.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 142 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 56/91 (61%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD +VG+R++ +R+ LG++Q L +G++FQQVQKYEKG NRV AS+L ++E ++ Sbjct: 14 PHPVDRHVGRRVQEKRLDLGLTQTALARAVGVSFQQVQKYEKGANRVSASKLFEMAEFMK 73 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTP 98 I FFF + EE D P Sbjct: 74 VDIPFFFQGFHDAQPGVGEEEAPGFDHEHKP 104 >gi|170748847|ref|YP_001755107.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655369|gb|ACB24424.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 143 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +G RI R+ G+SQ LG+ +G++FQQVQKYEKG NR+GA RLQ I+++L+ P+ Sbjct: 13 TDRTIGGRIAALRVAQGLSQTDLGQAIGVSFQQVQKYEKGRNRIGAGRLQAIADLLKVPV 72 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 FF P D P ++L F I D R I+ +V++ + Sbjct: 73 DTFF-ADP---RDTGGGRVGPAALFEDPKVMELVLAFTSITDETTRGGILSIVKAAAA 126 >gi|254462264|ref|ZP_05075680.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678853|gb|EDZ43340.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 133 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 36/64 (56%), Positives = 47/64 (73%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G RI+ RR+ L +SQ KL E +G+ FQQVQKYE G NRV ASRL ++E L PI Sbjct: 4 IDVLIGARIKGRRIALKISQTKLAEAVGVRFQQVQKYESGANRVSASRLLMVAETLGVPI 63 Query: 71 SFFF 74 S+FF Sbjct: 64 SYFF 67 >gi|218507310|ref|ZP_03505188.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 166 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 15/131 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 37 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 96 Query: 69 PISFFFDVSPTVCS----DISSEENNVMDFISTPDGLQLNRYFIQIDDV-----KVRQKI 119 P+S FF+ P + +E + + +IST +G +L IDDV +VR ++ Sbjct: 97 PVSRFFEGLPDPETLQGQQFITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRV 150 Query: 120 IELVRSIVSSE 130 + LV SIV E Sbjct: 151 VALVSSIVDEE 161 >gi|329891162|ref|ZP_08269505.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846463|gb|EGF96027.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 122 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D VG RI RR LG SQ LG LG++FQQ+QKYE G NRV ASRL + + Sbjct: 6 HHIDQAVGLRIAARRSALGWSQSVLGRELGVSFQQIQKYETGANRVSASRLHQAATAMGC 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ FF P+ ++ V +++ +G L F +I D R+ + + +++ Sbjct: 66 SVADFFPARPSAEGEV----ELVHPVLASAEGRGLAEAFARIPDAGARRALTRVAQAMAG 121 Query: 129 S 129 + Sbjct: 122 A 122 >gi|254419648|ref|ZP_05033372.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185825|gb|EDX80801.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 139 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 49/67 (73%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NPVD++VG+R+ RR L SQ +L + G+TFQQ+QKYE+G NR+ ASRL I+E L Sbjct: 15 NPVDLHVGRRVAERRQALRYSQAQLAQAAGVTFQQIQKYERGSNRIAASRLWEIAEFLNV 74 Query: 69 PISFFFD 75 +++FF+ Sbjct: 75 DLNYFFE 81 >gi|307942085|ref|ZP_07657436.1| Cro/CI family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307774371|gb|EFO33581.1| Cro/CI family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 126 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD VG R+R RR L MSQE L + LG +FQQ+QKYE G NR+ A RL I+ L Sbjct: 6 PNPVDTYVGIRVRQRRQALNMSQETLADKLGTSFQQLQKYENGTNRISAGRLHAIASALG 65 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + F++ P ++ ++ +V ++ P L Sbjct: 66 ATPGHFYEGLPDAPEEVETDL-DVQKLLTIPGATDL 100 >gi|83594572|ref|YP_428324.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577486|gb|ABC24037.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 149 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 11/131 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +VG+R+R RR L + QE L +G++FQQ+QKYE+G NR+ ASRL I++ L PI Sbjct: 18 VDAHVGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDIAKALAVPI 77 Query: 71 SFFFD----VSPTVCSDISSEENNVMDFISTP-------DGLQLNRYFIQIDDVKVRQKI 119 +FF P ++ + + S P L L + F + D +RQ Sbjct: 78 DYFFSDLERGDPRHDGALAEDMGRLAQGGSAPPDPLRLTQSLDLAQAFWALPDDGMRQSF 137 Query: 120 IELVRSIVSSE 130 I L++++ S E Sbjct: 138 IALLKAMSSFE 148 >gi|302381344|ref|YP_003817167.1| hypothetical protein Bresu_0229 [Brevundimonas subvibrioides ATCC 15264] gi|302191972|gb|ADK99543.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 139 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 5/107 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD +VG+R+ +R+ LG +Q LG LG+TFQQ+QKYEKG NR+ AS+L I+ + Sbjct: 10 PHPVDRHVGRRVCEKRISLGYNQSDLGRALGLTFQQIQKYEKGANRISASKLWDIARFFK 69 Query: 68 SPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 +++FF + P V +D + DF ST +++ R Q+ Sbjct: 70 VDVAYFFQGLNNEQPGV-ADGAGPAAFEHDFPSTRHTIEIARLAPQL 115 >gi|240851107|ref|YP_002972509.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268230|gb|ACS51818.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 156 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 60/84 (71%), Gaps = 1/84 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ +DI +GKRIR RR+ +G+SQ++LG L ++FQQ+QKYEK +NRV A L I++ Sbjct: 37 KNPHFIDILIGKRIRHRRISIGLSQKELGSHLSVSFQQIQKYEKDLNRVSAKCLLEIAQK 96 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L+ P++FF+ + D+S++E Sbjct: 97 LDVPVNFFY-ADLAIKEDLSTKET 119 >gi|304321344|ref|YP_003854987.1| DNA-binding protein [Parvularcula bermudensis HTCC2503] gi|303300246|gb|ADM09845.1| DNA-binding protein, putative [Parvularcula bermudensis HTCC2503] Length = 128 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 84/128 (65%), Gaps = 6/128 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P+D +VG+R+R RR +LGM+Q++L E +GI FQQ+QKYE G NRV ASRL ++E L Sbjct: 1 MAHPIDSHVGRRLRQRRSLLGMTQQRLAESVGIKFQQIQKYESGANRVSASRLWALAEAL 60 Query: 67 ESPISFFFD--VSPTV--CSDISSEENNVM-DFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 E P+S+FF+ SP + + +E + + + ++ + + L R + + + R+++++ Sbjct: 61 EVPVSYFFEGLSSPEMEESTAAKAEADTISPEVLTNKETIDLIRAYYGLKE-GPRRRLLD 119 Query: 122 LVRSIVSS 129 L +++ + Sbjct: 120 LAKTLAGA 127 >gi|240851105|ref|YP_002972507.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268228|gb|ACS51816.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 60/84 (71%), Gaps = 1/84 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ +DI +GKRIR RR+ +G+SQ++LG L ++FQQ+QKYEK +NRV A L I++ Sbjct: 4 KNPHFIDILIGKRIRHRRIAMGVSQKELGCHLSVSFQQIQKYEKDLNRVSAKCLLEIAQK 63 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L+ P++FF+ + D+S++E Sbjct: 64 LDVPVNFFY-ADLAIKEDLSTKET 86 >gi|218659215|ref|ZP_03515145.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli IE4771] Length = 122 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/69 (55%), Positives = 50/69 (72%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFD 75 + IS F+ Sbjct: 61 DVEISVLFE 69 >gi|222149186|ref|YP_002550143.1| transcriptional regulator HTH family [Agrobacterium vitis S4] gi|221736171|gb|ACM37134.1| transcriptional regulator HTH family [Agrobacterium vitis S4] Length = 134 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 4/117 (3%) Query: 5 KKIPNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 KK P+ D N+ G+R++ R GMSQ + LG+TFQQ+ KYEKG+N + ASRL Sbjct: 5 KKTPDVHDYNILAGERLKSARKNKGMSQADVARKLGVTFQQLHKYEKGINGMSASRLAAA 64 Query: 63 SEVLESPISFFFDVSPTVC--SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + +L FF+ V D SSE +++ S D L+LN F I + R+ Sbjct: 65 ATLLGMDPDFFYTADSAVAPSKDTSSELTDLVKATSRSDALELNTCFASIKNSNTRK 121 >gi|218658899|ref|ZP_03514829.1| probable transcriptional regulator protein [Rhizobium etli IE4771] Length = 85 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 57/80 (71%), Gaps = 6/80 (7%) Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFI 108 GASRLQ+IS +L P+SFFF+ +P S +S N V+DF+S+ +GLQLNR F+ Sbjct: 1 GASRLQNISSILNVPVSFFFEDAPGEHSGAIGGMAETSSSNYVVDFLSSSEGLQLNRAFV 60 Query: 109 QIDDVKVRQKIIELVRSIVS 128 +I D KVR+K++ELV+++ + Sbjct: 61 KISDPKVRRKVVELVKALAA 80 >gi|218458185|ref|ZP_03498276.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli Kim 5] Length = 110 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/69 (55%), Positives = 50/69 (72%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFD 75 + IS F+ Sbjct: 61 DVEISVLFE 69 >gi|240851111|ref|YP_002972513.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268234|gb|ACS51822.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ +DI +GKRIR RR+ + +SQ+ LG LG++FQQ+QKYEKG NRV L I++ Sbjct: 4 KNPHFIDILIGKRIRHRRISIELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQK 63 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 LE P++FF+ DIS++E Sbjct: 64 LEVPMNFFY-ADIVTKEDISTKET 86 >gi|218682257|ref|ZP_03529858.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 119 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 37/69 (53%), Positives = 50/69 (72%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFL 60 Query: 67 ESPISFFFD 75 + IS F+ Sbjct: 61 DVEISALFE 69 >gi|49476080|ref|YP_034121.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49476154|ref|YP_034195.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238888|emb|CAF28181.1| Transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238962|emb|CAF28260.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 128 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 57/81 (70%), Gaps = 6/81 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A RL+ I+++L PI+ Sbjct: 15 DIFVGKKIRFRRKMLKMSQKTLADHLKVSSQQIQKYETGLNRVSAGRLKEIADILSVPIA 74 Query: 72 FFF-DV-----SPTVCSDISS 86 FF+ D+ +PT +I+S Sbjct: 75 FFYADLFTKQDTPTQHDEIAS 95 >gi|190889812|ref|YP_001976354.1| transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] gi|218512245|ref|ZP_03509085.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli 8C-3] gi|190695091|gb|ACE89176.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] Length = 122 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 38/69 (55%), Positives = 49/69 (71%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG IR R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGHNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFD 75 + IS F+ Sbjct: 61 DVEISVLFE 69 >gi|209551664|ref|YP_002283581.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537420|gb|ACI57355.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 121 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 37/69 (53%), Positives = 50/69 (72%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFD 75 + IS F+ Sbjct: 61 DVEISALFE 69 >gi|86355802|ref|YP_467694.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86279904|gb|ABC88967.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 121 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/69 (56%), Positives = 48/69 (69%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R I +SQ LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRAIRRVSQLDLGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFD 75 IS F+ Sbjct: 61 GVEISALFE 69 >gi|222101983|ref|YP_002546573.1| hypothetical protein Arad_12024 [Agrobacterium radiobacter K84] gi|221728100|gb|ACM31109.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 150 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 4/99 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD VG++IR++R+ +SQ +LG+ +GI++QQVQKYE G NRV AS L I L Sbjct: 27 HPVDFYVGQQIRIQRVRANLSQTELGKGVGISYQQVQKYEVGTNRVSASMLWEIGNFLNV 86 Query: 69 PISFFFDVSPTV----CSDISSEENNVMDFISTPDGLQL 103 + FFD P + IS + N + FI+T +G +L Sbjct: 87 LPAMFFDGLPESGAGDLTQISPQANESLAFIATTEGREL 125 >gi|49476037|ref|YP_034078.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238845|emb|CAF28129.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 119 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 38/75 (50%), Positives = 53/75 (70%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A RL+ I+++L PI+ Sbjct: 15 DIFVGKKIRFRRKMLKMSQKTLADHLKVSPQQIQKYETGLNRVSAGRLKEIADILSVPIA 74 Query: 72 FFFDVSPTVCSDISS 86 FF +S S +SS Sbjct: 75 FFMLISSHNKSTLSS 89 >gi|241207094|ref|YP_002978190.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860984|gb|ACS58651.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 121 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 37/69 (53%), Positives = 50/69 (72%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFL 60 Query: 67 ESPISFFFD 75 + IS F+ Sbjct: 61 DVEISALFE 69 >gi|116249916|ref|YP_765754.1| HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254564|emb|CAK05638.1| putative HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 121 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 37/69 (53%), Positives = 50/69 (72%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFL 60 Query: 67 ESPISFFFD 75 + IS F+ Sbjct: 61 DVDISALFE 69 >gi|167645186|ref|YP_001682849.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347616|gb|ABZ70351.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 127 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 78/125 (62%), Gaps = 3/125 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D+ +GKR+R RR +LG +Q++L +G+ FQQ+QKYE G NR+ A+RL +SE L Sbjct: 1 MGNDIDVYLGKRLRRRRRLLGFTQQQLASTVGVRFQQIQKYECGANRISAARLWQLSEAL 60 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 E P+ +F+D +S D S+E + + + L L R + + + + R+++++L +S Sbjct: 61 EVPVGYFYDGLSDRTAKDASTEAEG-GEMFARKETLDLVRAYYLLGE-RPRRRLLDLAKS 118 Query: 126 IVSSE 130 + E Sbjct: 119 LNGGE 123 >gi|254562707|ref|YP_003069802.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254269985|emb|CAX25965.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 94 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 39 ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 +TFQQ+QKYE GVNRVGASRL ++ LE P+S FF+ + + + +F+ P Sbjct: 1 MTFQQIQKYENGVNRVGASRLSEVARALEVPVSTFFEEGSGL---VEQGQKEAFEFLRVP 57 Query: 99 DGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + L FI I+D ++R++++ LVRS E+ T Sbjct: 58 GAVDLLNAFITIEDDRLRREVLALVRSATRREQDQGT 94 >gi|58617626|ref|YP_196825.1| putative transcriptional regulator [Ehrlichia ruminantium str. Gardel] gi|58417238|emb|CAI28351.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str. Gardel] Length = 201 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 17/144 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 54 KSRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLAS 113 Query: 65 VLESPISFFF-----DVSPTVC-SDISS-------EENNVMDF----ISTPDGLQLNRYF 107 VL + D+ C +DI S EE V +F I + + L + R + Sbjct: 114 VLNVEVRDIMLKLQEDLKNISCGNDIVSTPSLKDNEEKFVPEFHDSKIDSKEVLMMVRAY 173 Query: 108 IQIDDVKVRQKIIELVRSIVSSEK 131 I + KVR I LV+++ + K Sbjct: 174 TCIKNEKVRNIIYNLVKALSTDNK 197 >gi|57239584|ref|YP_180720.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|58579573|ref|YP_197785.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|38098396|gb|AAR10929.1| hypothetical transcriptional regulator [Ehrlichia ruminantium] gi|57161663|emb|CAH58593.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|58418199|emb|CAI27403.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] Length = 201 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 17/144 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 54 KSRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLAS 113 Query: 65 VLESPISFFF-----DVSPTVC-SDISS-------EENNVMDF----ISTPDGLQLNRYF 107 VL + D+ C +DI S EE V +F I + + L + R + Sbjct: 114 VLNVEVRDIMLKLQEDLKNISCGNDIVSTPSLKDNEEKFVPEFHDSKIDSKEVLMMVRAY 173 Query: 108 IQIDDVKVRQKIIELVRSIVSSEK 131 I + KVR I LV+++ + K Sbjct: 174 TCIKNEKVRNIIYNLVKALSTDNK 197 >gi|254419929|ref|ZP_05033653.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186106|gb|EDX81082.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 117 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 8/118 (6%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVDI +G RIR RR L ++Q +L G+TFQQ+QKYE+GVNRV A+RL I+ VL+S Sbjct: 6 DPVDIAIGARIRARREELRITQAQLAAGAGVTFQQIQKYERGVNRVSAARLLQIAAVLKS 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ++ + E + + ++ P +L F I D + R ++ + + + Sbjct: 66 -------TGAALLGELETAEGDEL-ALAAPGVAELLSAFRSIRDAEKRDALLVVAKGL 115 >gi|114571049|ref|YP_757729.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114341511|gb|ABI66791.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 128 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 83/124 (66%), Gaps = 2/124 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +D++VGKR+R RR +LG++Q++L E +GI FQQ+QKYE G NRV ASRL ++E L Sbjct: 1 MTSDIDLHVGKRLRRRRRLLGLTQQQLAESVGIRFQQIQKYECGANRVSASRLFELAESL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+ +F++ + +++ ++ D +S + + L R + ++ + + R++++EL +S+ Sbjct: 61 DVPVQYFYE-GLSKRDEVNGDDTLAADVLSQKETVDLIRAYYRLGE-RPRKRLLELAKSL 118 Query: 127 VSSE 130 E Sbjct: 119 EPEE 122 >gi|99077913|ref|YP_611172.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99034856|gb|ABF61910.1| transcriptional regulator XRE family [Ruegeria sp. TM1040] Length = 125 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 49/69 (71%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI+VGKRIR RR + +Q+ L E +G+ QQ+Q YE NRV ASRL IS+VL Sbjct: 1 MPHPVDIHVGKRIRTRRWTVDETQKYLAEKVGVKCQQIQNYEVASNRVSASRLWDISKVL 60 Query: 67 ESPISFFFD 75 +++FF+ Sbjct: 61 GVDVTYFFE 69 >gi|144900186|emb|CAM77050.1| transcriptional regulators [Magnetospirillum gryphiswaldense MSR-1] Length = 153 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 21/131 (16%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+D+++GKRIR RR +G+S E L + + + + + E G RVG L +S VL+ Sbjct: 25 PNPLDLHLGKRIRARRNAIGLSLEDLAQAMAVATETLLAMENGSQRVGPQLLHRLSIVLD 84 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTP------------DGLQLNRYFIQIDDVKV 115 P +FFD P DF TP + L+L R ++ I D K Sbjct: 85 VPFGYFFDGMPRELD---------ADFPGTPFDDCDPVGDDMREALELVRAYLAISDEKK 135 Query: 116 RQKIIELVRSI 126 RQ + +L R + Sbjct: 136 RQMVHQLARKL 146 >gi|227822741|ref|YP_002826713.1| putative transcriptional regulator, XRE familiy [Sinorhizobium fredii NGR234] gi|227341742|gb|ACP25960.1| putative transcriptional regulator, XRE familiy [Sinorhizobium fredii NGR234] Length = 122 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/72 (48%), Positives = 49/72 (68%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN +D VG RIRLRR LGM +E LG LG+ QV++YE+G RV A++L +++VL+ Sbjct: 5 PNSIDAFVGHRIRLRRKALGMDEENLGAALGVPVAQVRRYEQGTRRVCAAQLLAMADVLQ 64 Query: 68 SPISFFFDVSPT 79 +FFF+ SP Sbjct: 65 VHFTFFFEESPA 76 >gi|221638300|ref|YP_002524562.1| XRE family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221159081|gb|ACM00061.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides KD131] Length = 102 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 4/100 (4%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 ++GM+Q++L +C+GI FQQ+QKYE G+NRV ASRL I+E L ISFFF+ Sbjct: 1 MVGMTQQQLADCVGIKFQQIQKYETGMNRVSASRLWDIAEALGVSISFFFEGLEGAGDQA 60 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 E D I+ + L+L R + I + + R+++ +L R Sbjct: 61 RQAEG---DRITDKEALELVRSYYAIPEAQ-RRRLFDLAR 96 >gi|218670926|ref|ZP_03520597.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli GR56] Length = 98 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 9/102 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ L+ + Sbjct: 1 MDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAGALKVDV 60 Query: 71 SFFFD--VSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFI 108 FFD +P +D SEE F+ + +G+ LN F Sbjct: 61 RTFFDDLSTPDTANDNPAPSEE-----FVISREGVLLNAAFF 97 >gi|269958434|ref|YP_003328221.1| putative transcriptional regulator [Anaplasma centrale str. Israel] gi|269848263|gb|ACZ48907.1| putative transcriptional regulator [Anaplasma centrale str. Israel] Length = 187 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 48/66 (72%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +VG K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVGGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVL 66 ++ VL Sbjct: 76 ELARVL 81 >gi|126729205|ref|ZP_01745019.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126710195|gb|EBA09247.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 102 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 62/97 (63%), Gaps = 1/97 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L+ P+SFFF+ +++++ Sbjct: 1 MTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDIADALDVPVSFFFEGIENENAEVAAG 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ D + + L L R + I + + R+++ EL R Sbjct: 61 DHVPADILGDKEALDLVRSYYAIPENQ-RRRLFELAR 96 >gi|86651824|gb|ABD14429.1| transcriptional regulator [Anaplasma centrale] Length = 187 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 37/66 (56%), Positives = 48/66 (72%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +VG K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVGGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVL 66 ++ VL Sbjct: 76 ELARVL 81 >gi|330814062|ref|YP_004358301.1| transcriptional regulator, Cro/CI family [Candidatus Pelagibacter sp. IMCC9063] gi|327487157|gb|AEA81562.1| transcriptional regulator, Cro/CI family [Candidatus Pelagibacter sp. IMCC9063] Length = 120 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 51/74 (68%), Gaps = 4/74 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++GK++RLRR LG++Q ++ + + +TFQQ+QKYEKG N V ++RL ++ L+ PI FF Sbjct: 8 HLGKKLRLRRTSLGLTQTQVAQAINVTFQQIQKYEKGTNGVSSARLLQLANFLKVPIKFF 67 Query: 74 F----DVSPTVCSD 83 F D S T +D Sbjct: 68 FEDYQDFSETTQND 81 >gi|118785|sp|P15017|DNU4_RHORU RecName: Full=Uncharacterized transcriptional regulator in ATPase CF(0) region; AltName: Full=URF4 gi|46375|emb|CAA31250.1| ORF 4 (AA 1 - 108); homolog. to DNA-binding proteins [Rhodospirillum rubrum] gi|152603|gb|AAA26459.1| pot. DNA-binding protein (URF4); putative [Rhodospirillum rubrum] Length = 108 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 46/64 (71%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +VG+R+R RR L + QE L +G++FQQ+QKYE+G NR+ ASRL I++ L PI Sbjct: 12 VDAHVGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDIAKALAVPI 71 Query: 71 SFFF 74 +FF Sbjct: 72 DYFF 75 >gi|163869144|ref|YP_001610383.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018830|emb|CAK02388.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 156 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/113 (47%), Positives = 71/113 (62%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGKRIRLRR L MSQ LG LGI+FQQVQKYEKG+NRV A RL IS++L PI Sbjct: 43 IDLLVGKRIRLRRKRLKMSQTTLGNALGISFQQVQKYEKGLNRVSAGRLMEISDILNVPI 102 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T +SS + + IS + L + F + VK R+ ++L+ Sbjct: 103 SFFYADIITKQHALSSHD----EIISNTEEYLLLKRFRTLTTVK-RKAFLQLI 150 >gi|90309028|gb|ABD93637.1| hypothetical transcriptional regulator [Ehrlichia muris] Length = 216 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 17/136 (12%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ VL Sbjct: 75 PHPVDECVGKEIKRQRIMRGMSQNQLATKLGITFQQVQKYEKGTNRIVISRLYQLATVLN 134 Query: 68 SPISFFF-----DVSPTVCSDI--------SSEENNVMDF----ISTPDGLQLNRYFIQI 110 + D+ C +EE + +F I + + L + R + I Sbjct: 135 VEVRDIMLKLQEDLKNIACDHTVACTSILRDNEEKFIPEFHDNKIDSKEVLMMVRAYTCI 194 Query: 111 DDVKVRQKIIELVRSI 126 + KVR I LV+++ Sbjct: 195 KNEKVRNIIYNLVKAL 210 >gi|56417165|ref|YP_154239.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] gi|255004638|ref|ZP_05279439.1| hypothetical protein AmarV_05075 [Anaplasma marginale str. Virginia] gi|23168718|gb|AAN08687.1| transcriptional regulator [Anaplasma marginale str. South Idaho] gi|23168730|gb|AAN08693.1| transcriptional regulator [Anaplasma marginale] gi|23168742|gb|AAN08699.1| transcriptional regulator [Anaplasma marginale] gi|23168754|gb|AAN08705.1| transcriptional regulator [Anaplasma marginale] gi|23168766|gb|AAN08711.1| transcriptional regulator [Anaplasma marginale str. Washington Okanogan] gi|56388397|gb|AAV86984.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] Length = 187 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 16/148 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVEGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----DVSP-TVCSDIS------SEENNVMDF-ISTPDG---LQLN 104 ++ VL I D+ P T D + EE+++ +F S DG L L Sbjct: 76 ELARVLGIEIKDLIAKLQNDLRPITDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 R + +I K+R I LV+ + + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCAEQQQ 163 >gi|84686223|ref|ZP_01014118.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665750|gb|EAQ12225.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 104 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 2/100 (2%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 ++GM+Q++L E +GI FQQ+QKYE G+NRV ASRL IS+ L P+SFFF+ ++ Sbjct: 1 MVGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDISDALSVPVSFFFE-GLEGGAER 59 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +E D ++ + L+L R + I + + R+++ EL R Sbjct: 60 EAEHALPDDILADKEALELVRSYYAIPENQ-RRRLFELAR 98 >gi|254995332|ref|ZP_05277522.1| hypothetical protein AmarM_05275 [Anaplasma marginale str. Mississippi] Length = 187 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 16/148 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVEGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----DVSP-TVCSDIS------SEENNVMDF-ISTPDG---LQLN 104 ++ VL I D+ P T D + EE+++ +F S DG L L Sbjct: 76 ELARVLGIEIKDLIAKLQNDLRPITDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 R + +I K+R I LV+ + + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCAEQQQ 163 >gi|88657852|ref|YP_507902.1| putative transcriptional regulator [Ehrlichia chaffeensis str. Arkansas] gi|88599309|gb|ABD44778.1| putative transcriptional regulator [Ehrlichia chaffeensis str. Arkansas] Length = 213 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 17/136 (12%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ VL Sbjct: 72 PHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLASVLN 131 Query: 68 SPISFFF-----DVSPTVCSDI--------SSEENNVMDF----ISTPDGLQLNRYFIQI 110 + D+ C +EE + +F I + + L + R + I Sbjct: 132 VEVRDIMLKLQEDLKNISCDHTVASTSTLKDNEEKFIPEFHDSKIDSKEVLMMVRAYTCI 191 Query: 111 DDVKVRQKIIELVRSI 126 + KVR I LV+++ Sbjct: 192 KNEKVRNIIYNLVKAL 207 >gi|68171793|ref|ZP_00545135.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa] gi|13511828|gb|AAC02808.2| hypothetical transcriptional regulator [Ehrlichia chaffeensis] gi|67998784|gb|EAM85494.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa] Length = 213 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 17/136 (12%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ VL Sbjct: 72 PHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLASVLN 131 Query: 68 SPISFFF-----DVSPTVCSDI--------SSEENNVMDF----ISTPDGLQLNRYFIQI 110 + D+ C +EE + +F I + + L + R + I Sbjct: 132 VEVRDIMLKLQEDLKNISCDHTVASTSTLKDNEEKFIPEFHDSKIDSKEVLMMVRAYTCI 191 Query: 111 DDVKVRQKIIELVRSI 126 + KVR I LV+++ Sbjct: 192 KNEKVRNIIYNLVKAL 207 >gi|302383125|ref|YP_003818948.1| hypothetical protein Bresu_2014 [Brevundimonas subvibrioides ATCC 15264] gi|302193753|gb|ADL01325.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 130 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 23/129 (17%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D++VG+++ R ++G+SQ +G +G+TFQQVQKYE+G NR+ AS L ++E L P+ Sbjct: 13 LDVHVGRQLIAARTLMGLSQSDVGRLVGVTFQQVQKYERGTNRISASVLWTLAEKLNLPV 72 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD---------GLQLNRYFIQIDDVKVRQKIIE 121 ++FF+ +E V TPD G+++ F ++ K ++ +++ Sbjct: 73 TYFFE---------GLDEGTV----RTPDFVFASLGKVGVEMADAFAKLSP-KRQRLLLD 118 Query: 122 LVRSIVSSE 130 L RS SS+ Sbjct: 119 LARSFASSD 127 >gi|319409074|emb|CBI82722.1| Transcriptional regulator [Bartonella schoenbuchensis R1] Length = 94 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 +LGMSQ+ L LGI+FQQ+QKYEKG+NRVGA RL+ I+++ PISFF+ + T Sbjct: 1 MLGMSQKTLAHHLGISFQQIQKYEKGLNRVGAGRLKDIADIFRVPISFFYPDTTT 55 >gi|48527206|gb|AAT45743.1| putative Cro/CI family trancriptional regulator [Rhizobium etli] Length = 76 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 38/65 (58%), Positives = 46/65 (70%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R I +SQ LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRAIRRVSQLDLGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPIS 71 IS Sbjct: 61 GVEIS 65 >gi|262277238|ref|ZP_06055031.1| transcription regulator [alpha proteobacterium HIMB114] gi|262224341|gb|EEY74800.1| transcription regulator [alpha proteobacterium HIMB114] Length = 121 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 54/77 (70%), Gaps = 2/77 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++GK++RLRR LG++Q ++ + + +TFQQ+QKYEKG N V ++RL +S L+ PI +F Sbjct: 8 HLGKKLRLRRTSLGLTQTQVAKAINVTFQQIQKYEKGTNGVSSARLLQLSSFLKVPIKYF 67 Query: 74 FDVSPTVCSDISSEENN 90 F+ S S+E+N+ Sbjct: 68 FEDYQDFAS--SNEDNS 82 >gi|255263044|ref|ZP_05342386.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105379|gb|EET48053.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 118 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 48/67 (71%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD++VGKRI+ R++ G SQ ++ L I+FQQ+QKYE G NR+ ASRL +S++ Sbjct: 3 HPVDVHVGKRIKEARILRGQSQSEIARELDISFQQIQKYESGKNRISASRLFELSQLFGI 62 Query: 69 PISFFFD 75 SFFFD Sbjct: 63 SPSFFFD 69 >gi|222087820|ref|YP_002546358.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725268|gb|ACM28424.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 159 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 82/134 (61%), Gaps = 5/134 (3%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G+ ++ +PVD +VG+++R+ R+ +SQ +LG +G+++QQVQKYE G NR+ AS L I Sbjct: 23 GDGQMIHPVDRHVGQQLRILRIHSNLSQTELGHEVGLSYQQVQKYESGKNRISASMLYVI 82 Query: 63 SEVLESPISFFFDVSPTVCSDISS----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + L P++ FFD P S+++ E + + +I+T +G + +++ ++R + Sbjct: 83 ASRLNVPVNRFFDGLPPSESEVTDGIVPEVDERIAYIATAEGRRFVEEILRLPP-RLRTR 141 Query: 119 IIELVRSIVSSEKK 132 + +++ + E++ Sbjct: 142 TLAVIKVLAGDEEE 155 >gi|73667507|ref|YP_303523.1| transcriptional regulator [Ehrlichia canis str. Jake] gi|72394648|gb|AAZ68925.1| transcriptional regulator [Ehrlichia canis str. Jake] Length = 215 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 17/136 (12%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ VL Sbjct: 74 PHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLASVLN 133 Query: 68 SPISFFF-----DVSPTVCSDI--------SSEENNVMDF----ISTPDGLQLNRYFIQI 110 + D+ C + +EE + +F I + + L + R + I Sbjct: 134 VEVRDIMLKLQEDLKNISCDNPITPPHALRDNEEKFLPEFNDSKIDSKEVLMMVRAYTCI 193 Query: 111 DDVKVRQKIIELVRSI 126 + KVR I LV+++ Sbjct: 194 KNEKVRNIIYNLVKAL 209 >gi|13512585|gb|AAK28679.1| hypothetical transcriptional regulator [Ehrlichia canis] Length = 204 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 17/136 (12%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ VL Sbjct: 63 PHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLASVLN 122 Query: 68 SPISFFF-----DVSPTVCSDI--------SSEENNVMDF----ISTPDGLQLNRYFIQI 110 + D+ C + +EE + +F I + + L + R + I Sbjct: 123 VEVRDIMLKLQEDLKNISCDNPITPPHALRDNEEKFLPEFNDSKIDSKEVLMMVRAYTCI 182 Query: 111 DDVKVRQKIIELVRSI 126 + KVR I LV+++ Sbjct: 183 KNEKVRNIIYNLVKAL 198 >gi|222475530|ref|YP_002563947.1| transcriptional regulator [Anaplasma marginale str. Florida] gi|222419668|gb|ACM49691.1| transcriptional regulator [Anaplasma marginale str. Florida] Length = 187 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 16/148 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V K P+PVD VG+ I+ +R++ GMS+ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVEGKARPHPVDEYVGREIKKQRIMKGMSRNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----DVSP-TVCSDIS------SEENNVMDF-ISTPDG---LQLN 104 ++ VL I D+ P T D + EE+++ +F S DG L L Sbjct: 76 ELARVLGIEIKDLIAKLQNDLRPITDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 R + +I K+R I LV+ + + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCAEQQQ 163 >gi|329891157|ref|ZP_08269500.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846458|gb|EGF96022.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 123 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 4/119 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ +R+ LG +Q LG+ LG+TFQQVQKYEKG NR+ AS+L I+ I +FF Sbjct: 1 MGRRVCEKRIALGYNQTDLGQALGVTFQQVQKYEKGANRISASKLWDIARFFRVDIGYFF 60 Query: 75 DVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + +E E V DF +T +++ R ++ + ++ +++L+R +V + Sbjct: 61 EGLTGAAQPGMAEGEAEPFVHDFPATRQTIEIGRLAPRLSS-RQQKLVVDLMRELVEDD 118 >gi|114798925|ref|YP_758959.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739099|gb|ABI77224.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 132 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 77/123 (62%), Gaps = 4/123 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + D++VGKR+R RR +LGM+Q+ L +G+ FQQ+QKYE G NR+ ASRL ++ + Sbjct: 1 MADETDLHVGKRLRRRRRLLGMTQQDLASQVGVRFQQIQKYECGANRITASRLYDLARAM 60 Query: 67 ESPISFFFD---VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + +F+D V TV + + E D +S + L+L R + ++ + + R++++EL Sbjct: 61 NVSVQYFYDGMVVPGTVPNAANDAEQMEGDILSQKETLELVRAYYRLSE-RPRRRLLELA 119 Query: 124 RSI 126 +++ Sbjct: 120 KAL 122 >gi|254295330|ref|YP_003061353.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043861|gb|ACT60656.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 132 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 81/128 (63%), Gaps = 4/128 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + VDI VGKR+R RR +LGM+Q+ L +G+ FQQ+QKYE G NR+ ASRL ++ L Sbjct: 1 MATDVDIYVGKRLRRRRRLLGMTQQDLASEIGVRFQQIQKYECGANRITASRLFDLANAL 60 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +S+FFD ++P +++ N+ + D +S + L+L R + ++ + + R+++++L Sbjct: 61 TVNVSYFFDGLAPDGKQAPANDGNDTLSGDILSQKETLELVRAYYRLSE-RPRRRLLDLA 119 Query: 124 RSIVSSEK 131 +++ K Sbjct: 120 KALEEDNK 127 >gi|163740854|ref|ZP_02148247.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385845|gb|EDQ10221.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 102 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 1/97 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L P+SFFF+ + S + Sbjct: 1 MTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDALSVPVSFFFEGLQDDDAPASDK 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D + + L L R + I + + R+++ EL R Sbjct: 61 AQVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 96 >gi|163745937|ref|ZP_02153296.1| transcriptional regulator, Cro/CI family, putative [Oceanibulbus indolifex HEL-45] gi|161380682|gb|EDQ05092.1| transcriptional regulator, Cro/CI family, putative [Oceanibulbus indolifex HEL-45] Length = 103 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 2/98 (2%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-VSPTVCSDISS 86 M+Q+KL E +GI FQQ+QKYE G NRV ASRL I++ L P+SFFF+ + + Sbjct: 1 MTQQKLAELVGIKFQQIQKYETGANRVSASRLWDIADALGVPVSFFFEGIKDDQAEGTAP 60 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + D ++ + ++L R + I + + R+++ EL R Sbjct: 61 LDGLPADLMADKEAMELVRSYYAIPENQ-RRRLFELAR 97 >gi|88607013|ref|YP_505749.1| DNA-binding protein [Anaplasma phagocytophilum HZ] gi|35057062|gb|AAN15209.1| putative transcriptional regulator [Anaplasma phagocytophilum] gi|88598076|gb|ABD43546.1| DNA-binding protein [Anaplasma phagocytophilum HZ] Length = 183 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 3/82 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 20 KAKPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELAR 79 Query: 65 VLESPISFFFDVSPTVCSDISS 86 VL I+ D+ + +DI S Sbjct: 80 VLGIEIN---DLMSKLQNDIRS 98 >gi|319409214|emb|CBI82858.1| transcriptional regulator (fragment) [Bartonella schoenbuchensis R1] Length = 95 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 11/99 (11%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 MSQ+ L LGI+FQQ+QKYEKG+NRVGA RL+ I+++ + PISFF+ D +++ Sbjct: 1 MSQKTLAHHLGISFQQIQKYEKGLNRVGAGRLKDIADIFDVPISFFY-------PDTTTK 53 Query: 88 ENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 E V + IS+ + L + F + VK ++ I+EL+ Sbjct: 54 EGGVHHHDEIISSKEEYLLLKSFRVLTSVK-QKAILELI 91 >gi|254456421|ref|ZP_05069850.1| transcription regulator [Candidatus Pelagibacter sp. HTCC7211] gi|207083423|gb|EDZ60849.1| transcription regulator [Candidatus Pelagibacter sp. HTCC7211] Length = 123 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 47/62 (75%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G +++LRR+ LG++Q K+ + + +TFQQ+QKYEKG N V + RL +S L+ PI++F Sbjct: 8 HLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLSNYLKVPINYF 67 Query: 74 FD 75 F+ Sbjct: 68 FE 69 >gi|254418112|ref|ZP_05031836.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196184289|gb|EDX79265.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 124 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 8/121 (6%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+DI VG RIR R G+SQ LG+ +GITFQQVQKYE G NRV AS+L I+ L Sbjct: 6 HPIDIQVGARIRTFREAAGISQHHLGKDIGITFQQVQKYETGANRVSASKLYLIARRLGV 65 Query: 69 PISFFFDVSPTVCSDI-SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 I+ + ++ E V++ ++ +L + QID + R +I++ ++ Sbjct: 66 SIA-------EIIGEVEDGERATVVESLTVARTHELLAAWNQIDTPEKRALLIDVAQTFA 118 Query: 128 S 128 + Sbjct: 119 A 119 >gi|254477432|ref|ZP_05090818.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214031675|gb|EEB72510.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 101 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 4/98 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L P+SFFF+ D ++E Sbjct: 1 MTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDALGVPVSFFFE--GLQEDDGAAE 58 Query: 88 ENNVM-DFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ V D + + L L R + I + + R+++ EL R Sbjct: 59 KSQVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELAR 95 >gi|163869149|ref|YP_001610389.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018836|emb|CAK02394.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 128 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 30/47 (63%), Positives = 37/47 (78%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L PISFF+ Sbjct: 1 MSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPISFFY 47 >gi|302381689|ref|YP_003817512.1| hypothetical protein Bresu_0574 [Brevundimonas subvibrioides ATCC 15264] gi|302192317|gb|ADK99888.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 128 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 1/100 (1%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEE 88 +Q++L +GI FQQ+QKYE G NR+ A+RL +SE LE+PIS+F+D + Sbjct: 23 TQQQLAIQVGIRFQQIQKYECGANRISAARLWQLSEALETPISYFYDGLAEAMERRETAS 82 Query: 89 NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 N + S + L L + + Q+ + + R+++++L +S+ S Sbjct: 83 ANGGEMFSRKETLDLIQAYYQLGE-RPRRRLLDLAKSLHS 121 >gi|163869010|ref|YP_001610241.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018688|emb|CAK02246.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 112 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 45/53 (84%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +L +SQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I+++L+ I F+ D+S Sbjct: 1 MLKISQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIADILDISIFFYADIS 53 >gi|71083650|ref|YP_266370.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91763309|ref|ZP_01265273.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1002] gi|71062763|gb|AAZ21766.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91717722|gb|EAS84373.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1002] Length = 123 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 47/62 (75%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G +++LRR+ LG++Q K+ + + +TFQQ+QKYEKG N V + RL ++ L+ P+++F Sbjct: 8 HLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLANYLKVPVNYF 67 Query: 74 FD 75 F+ Sbjct: 68 FE 69 >gi|222825161|dbj|BAH22318.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 133 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 6/88 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +P+D +G+RIR RR++ G SQ LG+ LGI+FQ +Q YE G R+ RL ++E L Sbjct: 3 IQHPIDKQIGERIRKRRLMCGFSQRDLGKKLGISFQHIQGYETGEVRLIVDRLYKLAEAL 62 Query: 67 ESPISFFFDVSP------TVCSDISSEE 88 +S+FF + SD+ SEE Sbjct: 63 SVDMSYFFTKASEDLHDKAFRSDVGSEE 90 >gi|84684043|ref|ZP_01011945.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667796|gb|EAQ14264.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 120 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 10/118 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D+ +G+RIR R+ G++Q++L +G+ FQQ+QKYE NRV SRL IS+ L Sbjct: 3 HPIDVFIGRRIREERVAAGLTQKELSILIGVKFQQLQKYETAANRVSGSRLWMISKALAV 62 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S F P SE++ + P +L R + ++ K++ ++I VR+I Sbjct: 63 PMSSFL---PDGVELPISEKD------AEPSDARLMRDILMLEP-KLKLELIRFVRAI 110 >gi|84500271|ref|ZP_00998537.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84392205|gb|EAQ04473.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 100 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I++ LE +SFFF+ + + + Sbjct: 1 MTQQQLAERVGIKFQQIQKYETGANRVSASRLWDIADALEVSVSFFFE---GLNEEDTKA 57 Query: 88 ENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 N + D + + L L R + I + + R+++ EL R Sbjct: 58 SNKIPADILGDKEALDLVRSYYAIPEAQ-RRRLFELAR 94 >gi|253700083|ref|YP_003021272.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774933|gb|ACT17514.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 114 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 49/78 (62%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G+SQEKL E +G++FQQ+QKYE G + +LQHI+ L+ ++ FF Sbjct: 10 IGTLIRRYRQDAGLSQEKLAEMVGVSFQQIQKYENGHTTLNIIKLQHIAAALKVAVTDFF 69 Query: 75 DVSPTVCSDISSEENNVM 92 D +P ++ EE+ ++ Sbjct: 70 DAAPVKGVRLTGEEDQLL 87 >gi|58699289|ref|ZP_00374080.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] gi|58534197|gb|EAL58405.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] Length = 124 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 6/88 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +P+D +G+RIR RR++ G SQ LG+ L I+FQ VQ YE G R+ RL ++EVL Sbjct: 3 IQHPIDKQIGERIRKRRLMCGFSQRDLGKKLEISFQHVQGYESGEIRLVVDRLYKLAEVL 62 Query: 67 ESPISFFFDVSP------TVCSDISSEE 88 +S+FF + SD+ SEE Sbjct: 63 SVDMSYFFTKASEDLHDKAFHSDVGSEE 90 >gi|254485635|ref|ZP_05098840.1| transcriptional regulator, Cro/CI family, putative [Roseobacter sp. GAI101] gi|214042504|gb|EEB83142.1| transcriptional regulator, Cro/CI family, putative [Roseobacter sp. GAI101] Length = 103 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 6/100 (6%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF---DVSPTVCSDI 84 M+Q+KL E +GI FQQ+QKYE G NRV ASRL I++ L +++FF D T D+ Sbjct: 1 MTQQKLAELVGIKFQQIQKYETGANRVSASRLWDIADALNVSVAYFFEGMDSEQTKNQDV 60 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +N D I + + L R + I + + R+++ EL R Sbjct: 61 P--DNIPADLIGDKEAMDLVRSYYAIPENQ-RRRLFELAR 97 >gi|46201614|ref|ZP_00054686.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 98 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 10/107 (9%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-VSPTVCSD 83 +LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I++VL P+ FF++ + SD Sbjct: 1 MLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLFEIAQVLGVPVGFFYEGLENRRGSD 60 Query: 84 ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +S+ + L+L R F I + + ++ + +L R + + E Sbjct: 61 LSARQRMC---------LELARNFTSITNERHQEALSQLARVLAAEE 98 >gi|254487347|ref|ZP_05100552.1| transcriptional Regulator, XRE family [Roseobacter sp. GAI101] gi|214044216|gb|EEB84854.1| transcriptional Regulator, XRE family [Roseobacter sp. GAI101] Length = 121 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 49/67 (73%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVDI+VGK+++ R + +SQ + + L ++FQQ+QKYE G NRV ASRL ++++L+ Sbjct: 5 HPVDIHVGKKLKQIRTLRRLSQTDVAKQLKLSFQQIQKYEIGSNRVAASRLFELAQILDV 64 Query: 69 PISFFFD 75 SFFF+ Sbjct: 65 SPSFFFE 71 >gi|218508788|ref|ZP_03506666.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 125 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 15/118 (12%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP--- 78 RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ P+S FF+ P Sbjct: 1 RRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEGLPDPE 60 Query: 79 -TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-----KVRQKIIELVRSIVSSE 130 T I +E + + +IST +G +L IDDV +VR +++ LV SIV E Sbjct: 61 TTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRVVALVSSIVDEE 112 >gi|315498606|ref|YP_004087410.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315416618|gb|ADU13259.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 127 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 66/98 (67%), Gaps = 1/98 (1%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEE 88 +Q++L +GI FQQ+QKYE G NR+ A+RL +++ LE+P+++F+D +++++ + Sbjct: 23 TQQQLALAVGIRFQQIQKYECGANRISAARLFQLAKALETPVTYFYDGLEDNTTEVAAVQ 82 Query: 89 NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 N ++ S + L L + + ++ + + R+++++L +S+ Sbjct: 83 NEGIEVFSRKETLDLIQAYYRLSE-RPRRRLLDLAKSL 119 >gi|49476040|ref|YP_034081.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238848|emb|CAF28132.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 125 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 47/66 (71%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A L+ I+++L I+ Sbjct: 60 DIFVGKKIRFRRKMLKMSQKTLADHLRVSSQQIQKYETGLNRVSAGCLKEIADILNVSIA 119 Query: 72 FFFDVS 77 FF +S Sbjct: 120 FFMPIS 125 >gi|156936184|ref|YP_001440100.1| hypothetical protein ESA_04083 [Cronobacter sakazakii ATCC BAA-894] gi|46093560|dbj|BAD14974.1| hypothetical protein [Escherichia coli] gi|156534438|gb|ABU79264.1| hypothetical protein ESA_04083 [Cronobacter sakazakii ATCC BAA-894] Length = 125 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + D VG+RI++RR LG++ + L E + I+ QQ+ +YE+G N++ + L +I+ L + Sbjct: 7 DSADKQVGQRIQMRRKELGITAQHLAELVDISHQQLSRYERGTNKINVAHLVNIAIKLNT 66 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 PIS+FF S + +E N DF+ D NR+ Sbjct: 67 PISWFF---IDCFSTLDNESKNQQDFVPVKDADLKNRF 101 >gi|16126490|ref|NP_421054.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235270|ref|YP_002517707.1| transcriptional regulator of stalk biogenesis staR [Caulobacter crescentus NA1000] gi|13423760|gb|AAK24222.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|78057842|gb|ABB17333.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|220964443|gb|ACL95799.1| transcriptional regulator of stalk biogenesis staR [Caulobacter crescentus NA1000] Length = 131 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 77/120 (64%), Gaps = 1/120 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D+++GKR+R RR +LG++Q++L +G+ FQQ+QKYE G NR+ A+RL +SE L Sbjct: 4 MGNDIDVHLGKRLRRRRRLLGLTQQQLAGTVGVRFQQIQKYECGANRISAARLWQLSEAL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+ +F+D + +SE + + + L L R + + + + R+++++L +S+ Sbjct: 64 EVPVGYFYDGLSDTRRETTSESAEGGEMFARKETLDLIRAYYLLGE-RPRRRLLDLAKSL 122 >gi|163733855|ref|ZP_02141297.1| HTH-type transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161392966|gb|EDQ17293.1| HTH-type transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 119 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VG++++ R + +SQ + L ++FQQ+QKYE G NR+ ASRL +S + Sbjct: 1 MSHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIF 60 Query: 67 ESPISFFFD----VSPTVC 81 + P S+FF+ + T C Sbjct: 61 DVPTSYFFEGLDAATKTTC 79 >gi|13475238|ref|NP_106802.1| hypothetical protein mlr6265 [Mesorhizobium loti MAFF303099] gi|14025989|dbj|BAB52588.1| mlr6265 [Mesorhizobium loti MAFF303099] Length = 215 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 65/105 (61%), Gaps = 7/105 (6%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K P+P D +VG++I R+ +SQ +L +G++FQQ+QKYE NRV AS L I+ Sbjct: 24 SKSRPHPADQHVGRQIATVRLQSDVSQAQLARAIGVSFQQLQKYENARNRVSASMLYEIA 83 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNV-----MDFISTPDGLQL 103 L+ P+S FF+ + ++IS E + + ++FI++ +G +L Sbjct: 84 RSLDVPVSRFFEG--LLGNEISGETSPLPIDERIEFIASAEGRRL 126 >gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 101 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/60 (51%), Positives = 45/60 (75%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ RR LGM+ KL E +GI+ QQ+ +YE+G+NR+ S L I+ +LE+PI++FF Sbjct: 10 VGKRIQKRRKELGMTAVKLAEKIGISQQQLSRYERGINRINLSHLVQIASILETPINWFF 69 >gi|110678693|ref|YP_681700.1| HTH-type transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109454809|gb|ABG31014.1| HTH-type transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 119 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VG++++ R + +SQ + L ++FQQ+QKYE G NR+ ASRL +S + Sbjct: 1 MSHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIF 60 Query: 67 ESPISFFFD----VSPTVC 81 + P S+FF+ + T C Sbjct: 61 DVPTSYFFEGLDAATKTTC 79 >gi|83594727|ref|YP_428479.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577641|gb|ABC24192.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 180 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 13/136 (9%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D VG+R+RLRR +LG+SQ++L + +GITFQQVQKYE+GVNR+ +SRL + +L Sbjct: 17 PDPLDKEVGRRLRLRRKLLGLSQQQLADAVGITFQQVQKYERGVNRLSSSRLWDFATILG 76 Query: 68 SPISFFF------DVSPTV------CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +SFFF DV T+ D + + D + + L+L Y +V Sbjct: 77 VSVSFFFEDLEAADVDRTIPRARRDAQDETITQTTAEDPLVRTETLELC-YAFWATTPRV 135 Query: 116 RQKIIELVRSIVSSEK 131 R++ ++ +++ + EK Sbjct: 136 RKRYLDFLKTAATLEK 151 >gi|83941543|ref|ZP_00954005.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83847363|gb|EAP85238.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 119 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 49/67 (73%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVDI+VGK+++ R + +SQ + + L ++FQQ+QKYE G NRV ASRL +S++L+ Sbjct: 3 HPVDIHVGKKLKQIRTLRRLSQTDVAKRLNLSFQQIQKYEIGSNRVAASRLFELSQILDV 62 Query: 69 PISFFFD 75 ++FF+ Sbjct: 63 TPAYFFE 69 >gi|157964557|ref|YP_001499381.1| putative transcriptional regulator [Rickettsia massiliae MTU5] gi|157844333|gb|ABV84834.1| Putative transcriptional regulator [Rickettsia massiliae MTU5] Length = 131 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 13/135 (9%) Query: 1 MVGNKK-IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+G K I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MMGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVR 116 I+E L+ I +FF+ EE N + T ++++R F++I+ + + Sbjct: 61 VLIAEALDRNIDYFFE---------GLEEANKPRPVHTQHQRMCIEVSRNFMKINSTEEQ 111 Query: 117 QKIIELVRSIVSSEK 131 Q + LV+ + EK Sbjct: 112 QAVNNLVKCLAGKEK 126 >gi|83855020|ref|ZP_00948550.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83842863|gb|EAP82030.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 119 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 50/69 (72%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGK+++ R + +SQ + + L ++FQQ+QKYE G NRV ASRL +S++L Sbjct: 1 MSHPVDIHVGKKLKQIRTLRRLSQTDVAKRLNLSFQQIQKYEIGSNRVAASRLFELSQIL 60 Query: 67 ESPISFFFD 75 + ++FF+ Sbjct: 61 DVTPAYFFE 69 >gi|295690271|ref|YP_003593964.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432174|gb|ADG11346.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 127 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 78/124 (62%), Gaps = 1/124 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D+++GKR+R RR +LG++Q++L E +G+ FQQ+QKYE G NR+ A+RL ++E L Sbjct: 1 MGNDIDVHLGKRLRRRRRLLGLTQQQLAEVVGVRFQQIQKYECGANRISAARLWQLAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+ +F+D V + + E + + + L R + + + + R+++++L +S+ Sbjct: 61 EVPVGYFYDGLSEVRREAAGEIAESGEMFARKETQDLVRAYYLLGE-RPRRRLLDLAKSL 119 Query: 127 VSSE 130 E Sbjct: 120 HGGE 123 >gi|157803756|ref|YP_001492305.1| transcriptional regulator [Rickettsia canadensis str. McKiel] gi|157785019|gb|ABV73520.1| Predicted transcriptional regulator [Rickettsia canadensis str. McKiel] Length = 130 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 12/128 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL I+E L Sbjct: 7 IIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLVLIAEAL 66 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQKIIELV 123 + I +FF+ EE N + T ++++R F++I+ + +Q I LV Sbjct: 67 DRNIDYFFE---------GLEEANKPQPVHTQHQRMCIEVSRNFMKINSTEEQQAINNLV 117 Query: 124 RSIVSSEK 131 + + EK Sbjct: 118 KCLAGKEK 125 >gi|329849657|ref|ZP_08264503.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328841568|gb|EGF91138.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 127 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 65/98 (66%), Gaps = 1/98 (1%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEE 88 +Q++L +GI FQQ+QKYE G NR+ A+RL +++ LE+PI++F+D +++++ Sbjct: 23 TQQQLALAVGIRFQQIQKYECGANRISAARLFQLAKALETPINYFYDGLSDEKTEVAAVN 82 Query: 89 NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 N ++ S + L L + + ++ + + R+++++L +S+ Sbjct: 83 NEGIEVFSRKETLDLIQAYYRLSE-RPRRRLLDLAKSL 119 >gi|67458969|ref|YP_246593.1| hypothetical protein RF_0577 [Rickettsia felis URRWXCal2] gi|67004502|gb|AAY61428.1| unknown [Rickettsia felis URRWXCal2] Length = 163 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 36/158 (22%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N I +P D +R++ RR+ +G+SQ++LG+ L I+ QV+KYE+G++ + SRL + Sbjct: 2 NDSIKHP-DKLASERLKERRLAVGISQKELGQALDISALQVKKYEEGLSNIPISRLYVFA 60 Query: 64 EVLESPISFFFDVS--PTVCSDISSEENNVMDF------------ISTPDG--------- 100 +VL +P+ +FF+ S + +D + NN +++ I+ +G Sbjct: 61 KVLNTPLKYFFNSSEEEKLKTDDENTSNNKIEYLFKEIESDFLNNIAEEEGQYENDVSFD 120 Query: 101 ------------LQLNRYFIQIDDVKVRQKIIELVRSI 126 L L R F ++ + +R+ IIELVRS+ Sbjct: 121 YKELSRTMERELLSLTRAFTRVQNPNIRKIIIELVRSV 158 >gi|222081446|ref|YP_002540809.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726125|gb|ACM29214.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 222 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 51/76 (67%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +VG+++R+ R+ +SQ +LG + +++QQ+QKYE G NR+ AS L I+ L Sbjct: 73 HPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNV 132 Query: 69 PISFFFDVSPTVCSDI 84 PIS F+D P S++ Sbjct: 133 PISRFYDGLPQAGSEL 148 >gi|222087277|ref|YP_002545812.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724725|gb|ACM27881.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 180 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 51/76 (67%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +VG+++R+ R+ +SQ +LG + +++QQ+QKYE G NR+ AS L I+ L Sbjct: 31 HPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNV 90 Query: 69 PISFFFDVSPTVCSDI 84 PIS F+D P S++ Sbjct: 91 PISRFYDGLPQAGSEL 106 >gi|67459118|ref|YP_246742.1| transcriptional regulator [Rickettsia felis URRWXCal2] gi|67004651|gb|AAY61577.1| Predicted transcriptional regulator [Rickettsia felis URRWXCal2] Length = 130 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 12/128 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL I+E L Sbjct: 7 IIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLVLIAEAL 66 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQKIIELV 123 + I +FF+ EE N + T ++++R F++I+ + +Q + LV Sbjct: 67 DRNIDYFFE---------GLEEANKPQPVHTQHQRMCIEVSRNFMKINSTEEQQAVNNLV 117 Query: 124 RSIVSSEK 131 + + EK Sbjct: 118 KCLAGKEK 125 >gi|254796616|ref|YP_003081452.1| DNA-binding protein [Neorickettsia risticii str. Illinois] gi|254589843|gb|ACT69205.1| DNA-binding protein [Neorickettsia risticii str. Illinois] Length = 144 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 5/128 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K D+ +GK+IR R + G SQ + + +G+TFQQ+QKYE G NR+ SRL I Sbjct: 7 NFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVSRLLDIC 66 Query: 64 EVLE-SPISFFFDVSPTVCSDISSEENNVMDFIS----TPDGLQLNRYFIQIDDVKVRQK 118 + + SP FF ++ D + N ++F + L L R F I VR K Sbjct: 67 KFCKVSPSYFFASLNKEQEGDTLHDSENSIEFEHENECNKELLVLVRAFKSITQDSVRSK 126 Query: 119 IIELVRSI 126 ++ LV+++ Sbjct: 127 VLSLVKTM 134 >gi|88608440|ref|YP_506124.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama] gi|88600609|gb|ABD46077.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama] Length = 144 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 5/128 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K D+ +GK+IR R + G SQ + + +G+TFQQ+QKYE G NR+ SRL I Sbjct: 7 NFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVSRLLDIC 66 Query: 64 EVLE-SPISFFFDVSPTVCSDISSEENNVMDFIS----TPDGLQLNRYFIQIDDVKVRQK 118 + + SP FF ++ D + N ++F + L L R F I VR K Sbjct: 67 KFCKVSPSYFFASLNKEQEGDTLHDSENSIEFEHENEYNKELLVLVRAFKSITQDSVRSK 126 Query: 119 IIELVRSI 126 ++ LV+++ Sbjct: 127 VLSLVKTM 134 >gi|167041371|gb|ABZ06124.1| putative helix-turn-helix motif protein [uncultured marine microorganism HF4000_005K23] Length = 121 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 7/75 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G ++R RR+ LG++Q K+ + + +TFQQ+QKYEKG N + + R+ ++ L+ P+ +F Sbjct: 8 HLGTKLRTRRLALGLTQTKVAQAINVTFQQIQKYEKGTNGISSLRIMQLANFLKVPVVYF 67 Query: 74 FDVSPTVCSDISSEE 88 ++ D SS E Sbjct: 68 YE-------DFSSYE 75 >gi|163744744|ref|ZP_02152104.1| HTH-type transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] gi|161381562|gb|EDQ05971.1| HTH-type transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] Length = 127 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VG+R++ R + SQ + L ++FQQ+QKYE G NR+ ASRL ++ +L Sbjct: 10 MSHPVDIHVGRRLKQARTLRKQSQTDVARELKLSFQQIQKYEIGSNRIAASRLHELARIL 69 Query: 67 ESPISFFF----DVSPTVCSD 83 + +FF D +P +D Sbjct: 70 DVTPGYFFEGLNDDAPETKND 90 >gi|15604357|ref|NP_220873.1| hypothetical protein RP497 [Rickettsia prowazekii str. Madrid E] gi|51473681|ref|YP_067438.1| hypothetical protein RT0484 [Rickettsia typhi str. Wilmington] gi|7388420|sp|Q9ZD50|Y497_RICPR RecName: Full=Uncharacterized HTH-type transcriptional regulator RP497 gi|3861049|emb|CAA14949.1| unknown [Rickettsia prowazekii] gi|51459993|gb|AAU03956.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] gi|292572112|gb|ADE30027.1| Putative transcriptional regulator [Rickettsia prowazekii Rp22] Length = 130 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 12/128 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +D +G++I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL I+E L Sbjct: 7 IIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLVLIAEAL 66 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQKIIELV 123 + I +FF+ EE N + T ++++R F++I+ + +Q I LV Sbjct: 67 DRNIDYFFE---------GLEEANKPQPVHTQHQRMCIEVSRNFMKINSTEEQQAINNLV 117 Query: 124 RSIVSSEK 131 + + EK Sbjct: 118 KCLAGKEK 125 >gi|197106408|ref|YP_002131785.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479828|gb|ACG79356.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 124 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 76/124 (61%), Gaps = 13/124 (10%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D+++G+++R RR +LG++Q++L G+ FQQ+QKYE NR+ A+RL ++E+L++ Sbjct: 2 DEIDLHLGRKLRRRRKMLGLTQQELAGACGVRFQQIQKYECAANRMSAARLWKLAEILDA 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL---QLNRYFIQID---DVKVRQKIIEL 122 P+S+F++ +S + + PD + + R IQ D + R++++EL Sbjct: 62 PVSYFYE-------GLSEAQRQAHEAFREPDDVFTRKETRELIQAYYALDERPRRQLLEL 114 Query: 123 VRSI 126 +++ Sbjct: 115 AKAM 118 >gi|91206072|ref|YP_538427.1| hypothetical protein RBE_1257 [Rickettsia bellii RML369-C] gi|157826572|ref|YP_001495636.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389] gi|91069616|gb|ABE05338.1| unknown [Rickettsia bellii RML369-C] gi|157801876|gb|ABV78599.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389] Length = 186 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 36/153 (23%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +R++ RR+ +G+SQ++LGE L I+ Q++KYE+G++ + SRL ++++L +P+ Sbjct: 31 IDKIASERLKQRRIAIGLSQKELGETLDISAIQIKKYEEGISTIPVSRLYVLAKILNTPL 90 Query: 71 SFFFDVSPTVCSDISSEEN---NVMDFISTP----------------------------- 98 FF+ S + +++++N N ++++S Sbjct: 91 KHFFNTSISEEERLNTDDNIFDNEIEYLSNEIDEHLLNNVAEEDEDYEYNIPFSREDLTR 150 Query: 99 ----DGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L L R F +I + VR+ IIELVRS+ Sbjct: 151 TLEREILSLTRAFTKIQNPDVRKIIIELVRSLA 183 >gi|218462730|ref|ZP_03502821.1| putative transcriptional regulator protein [Rhizobium etli Kim 5] gi|218516609|ref|ZP_03513449.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 123 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 15/107 (14%) Query: 33 LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP----TVCSDISSEE 88 LG +G++ QQVQKYE G NRV AS L ++ L+ P+S FF+ P T I +E Sbjct: 10 LGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEGLPDPETTHGQQIITEI 69 Query: 89 NNVMDFISTPDGLQLNRYFIQIDDV-----KVRQKIIELVRSIVSSE 130 + + +IST +G +L IDDV +VR +++ LV SIV E Sbjct: 70 DEKIAYISTAEGRRL------IDDVLLLSPRVRSRVVALVSSIVDEE 110 >gi|329891045|ref|ZP_08269388.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846346|gb|EGF95910.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 90 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 57/69 (82%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +D+++G+R+R RR +LG++Q++LG+ +GI FQQ+QKYE G NR+ A+RL ++E L Sbjct: 1 MPAEIDLHLGRRLRRRRRLLGLTQQQLGDRVGIRFQQIQKYECGANRISAARLWELAEAL 60 Query: 67 ESPISFFFD 75 ++P+S+F+D Sbjct: 61 QTPVSYFYD 69 >gi|222825165|dbj|BAH22322.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 120 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 45/66 (68%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +G+RIR RR++ G+SQ LG+ L I+FQ +Q YE G R+ RL +++E L Sbjct: 5 HPIDKQIGERIRKRRLMCGLSQRDLGKKLEISFQHIQGYETGEVRLIVDRLYNLAEALSV 64 Query: 69 PISFFF 74 +S+FF Sbjct: 65 DMSYFF 70 >gi|83949849|ref|ZP_00958582.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837748|gb|EAP77044.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 99 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I+ ++ +SFFFD + ++ Sbjct: 1 MTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIAGAMDVDVSFFFD---GLERADAAA 57 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + D + + L L R + I + + R+++ EL R Sbjct: 58 PSAAGDLLGDKEALDLVRSYYSIPENQ-RRRLFELAR 93 >gi|316933837|ref|YP_004108819.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601551|gb|ADU44086.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 152 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 42/64 (65%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + R+R+ R+ G+SQEK E LG++FQQVQKYE G NR+ +L ++ + PI Sbjct: 27 IDSRIAARLRVARIEAGLSQEKTAEALGLSFQQVQKYESGKNRISPGKLAVLAALYGKPI 86 Query: 71 SFFF 74 + F+ Sbjct: 87 ASFY 90 >gi|222082024|ref|YP_002541389.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726703|gb|ACM29792.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 160 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 61/96 (63%), Gaps = 4/96 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +VG+++R+ R+ +SQ +LG + +++QQ+QKYE G NR+ AS L I+ L Sbjct: 31 HPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNV 90 Query: 69 PISFFFDVSPTVCSDISS----EENNVMDFISTPDG 100 PIS F++ P S++ + E + + +++T +G Sbjct: 91 PISRFYEGLPQAGSELVNGGLPEIDERIAYLATSEG 126 >gi|209966969|ref|YP_002299884.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] gi|209960435|gb|ACJ01072.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] Length = 191 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SP 69 V +G+R+R RR +LGM+Q++LG +G+TFQQVQKYE+G NRV L ++ L+ +P Sbjct: 21 VSAALGERVRARRGLLGMTQQELGRRVGLTFQQVQKYERGSNRVAVPTLIKLANALDTTP 80 Query: 70 ISFFFDVSPT-VCSDISSEENNVMDFIST 97 + T V S ++ + ++ +S Sbjct: 81 ADLLEGLGATQVGSRDAALDRESLNLLSA 109 >gi|49476087|ref|YP_034128.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238895|emb|CAF28188.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 108 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 3/66 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A RL+ I++ ++ + Sbjct: 15 DIFVGKKIRFRRKMLKMSQKTLADHLRVSSQQIQKYETGLNRVSAGRLKEIADRVK---T 71 Query: 72 FFFDVS 77 FF D+S Sbjct: 72 FFDDLS 77 >gi|157825788|ref|YP_001493508.1| hypothetical protein A1C_03595 [Rickettsia akari str. Hartford] gi|157799746|gb|ABV75000.1| hypothetical protein A1C_03595 [Rickettsia akari str. Hartford] Length = 130 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 12/128 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +D +G++I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL I+E L Sbjct: 7 IIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLVLIAEAL 66 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQKIIELV 123 + I +FF+ EE N + T ++++R F++I+ + +Q I LV Sbjct: 67 DRNIDYFFE---------GLEEANKPQPVYTQHQRMCIEVSRNFMKINSTEEQQAINNLV 117 Query: 124 RSIVSSEK 131 + + +K Sbjct: 118 KCLAGKDK 125 >gi|253988215|ref|YP_003039571.1| hypothetical protein PAU_00734 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638791|emb|CAR67408.1| hypothetical protein PA-RVA13-1279 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779665|emb|CAQ82826.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 101 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 44/60 (73%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ RR LGM+ KL +GI+ QQ+ +YE+G+NR+ S L I+ +L++PI++FF Sbjct: 10 VGKRIQKRRKELGMTAVKLAGQIGISQQQLSRYERGINRIDLSHLVQIASILDTPINWFF 69 >gi|302337126|ref|YP_003802332.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634311|gb|ADK79738.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 132 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 8/86 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G+ IR R G+SQ LGE +G+++QQ+QKYE G + + A +L I+E+L P Sbjct: 3 PDKSTIGRNIRSYRKACGLSQASLGEKVGVSYQQIQKYENGASSISAFQLGRIAEILAVP 62 Query: 70 ISFFF--------DVSPTVCSDISSE 87 I FF + P S+I E Sbjct: 63 IDCFFHLDTESGAEAPPAYSSEIGDE 88 >gi|91205491|ref|YP_537846.1| putative transcriptional regulator [Rickettsia bellii RML369-C] gi|157827144|ref|YP_001496208.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389] gi|91069035|gb|ABE04757.1| Putative transcriptional regulator [Rickettsia bellii RML369-C] gi|157802448|gb|ABV79171.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 137 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 12/134 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYE+ +NR+ RL Sbjct: 1 MARKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYERAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQ 117 I+E L+ I +FF+ EE N + T ++++R F++I +Q Sbjct: 61 LIAEALDRNIDYFFE---------GLEEANKPQPVHTQHQRMCIEVSRNFMKIQSTDEQQ 111 Query: 118 KIIELVRSIVSSEK 131 + LV+ + +K Sbjct: 112 AVNNLVKCLAGKDK 125 >gi|258543105|ref|YP_003188538.1| XRE family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634183|dbj|BAI00159.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01] gi|256637243|dbj|BAI03212.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-03] gi|256640295|dbj|BAI06257.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-07] gi|256643352|dbj|BAI09307.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-22] gi|256646407|dbj|BAI12355.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-26] gi|256649460|dbj|BAI15401.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-32] gi|256652446|dbj|BAI18380.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655504|dbj|BAI21431.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-12] Length = 138 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+I N D +G RIR RR L MS E+LG +G T+QQ+QKYE G N + A+ L + Sbjct: 66 KRIRN--DKRLGFRIRQRRHELHMSLEQLGHAIGCTYQQMQKYETGKNAIKATLLPTFAT 123 Query: 65 VLESPISFFFD 75 L+ P+++FF+ Sbjct: 124 ALDVPLTWFFE 134 >gi|15892591|ref|NP_360305.1| hypothetical protein RC0668 [Rickettsia conorii str. Malish 7] gi|157828542|ref|YP_001494784.1| hypothetical protein A1G_03795 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933258|ref|YP_001650047.1| transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|229586759|ref|YP_002845260.1| Putative transcriptional regulator [Rickettsia africae ESF-5] gi|238650247|ref|YP_002916098.1| transcriptional regulator [Rickettsia peacockii str. Rustic] gi|38503361|sp|Q92HV3|Y668_RICCN RecName: Full=Uncharacterized HTH-type transcriptional regulator RC0668 gi|15619757|gb|AAL03206.1| unknown [Rickettsia conorii str. Malish 7] gi|157801023|gb|ABV76276.1| hypothetical protein A1G_03795 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908345|gb|ABY72641.1| transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|228021809|gb|ACP53517.1| Putative transcriptional regulator [Rickettsia africae ESF-5] gi|238624345|gb|ACR47051.1| transcriptional regulator [Rickettsia peacockii str. Rustic] Length = 125 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 12/127 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL I+E L Sbjct: 7 IIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLVLIAEAL 66 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQKIIELV 123 + I +FF+ EE N + T ++++R F++I+ + +Q + LV Sbjct: 67 DRNIDYFFE---------GLEEANKPQPVHTQHQRMCIEVSRNFMKINSTEEQQAVNNLV 117 Query: 124 RSIVSSE 130 + + + Sbjct: 118 KCLAGKK 124 >gi|307317593|ref|ZP_07597032.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306896751|gb|EFN27498.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 89 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 4/75 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K +D +G R+R R++ GMSQ L E LGITFQQ+QKYEKG NR+ AS L I + Sbjct: 6 KAQTTHIDQKIGARVREFRLLRGMSQGALAEKLGITFQQMQKYEKGANRISASALILICK 65 Query: 65 VLE-SP---ISFFFD 75 L +P + FFD Sbjct: 66 ELGITPNHILGAFFD 80 >gi|154247535|ref|YP_001418493.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161620|gb|ABS68836.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 130 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 42/64 (65%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G R++ R+ G+SQE LGE LGITFQQ+QKYE G NR+ S L I++ L+ Sbjct: 11 LDVVIGFRVKQSRLRSGVSQEALGEHLGITFQQIQKYENGKNRIACSTLVMIADFLKVSA 70 Query: 71 SFFF 74 F Sbjct: 71 LFLL 74 >gi|34580426|ref|ZP_00141906.1| hypothetical protein [Rickettsia sibirica 246] gi|28261811|gb|EAA25315.1| unknown [Rickettsia sibirica 246] Length = 125 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 12/127 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL I+E L Sbjct: 7 IIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLVLIAEAL 66 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQKIIELV 123 + I +FF+ EE N + T +++ R F++I+ + +Q + LV Sbjct: 67 DRNIDYFFE---------GLEEANKPQPVHTQHQRMCIEVARNFMKINSTEEQQAVNNLV 117 Query: 124 RSIVSSE 130 + + + Sbjct: 118 KCLAGKK 124 >gi|150378060|ref|YP_001314655.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032607|gb|ABR64722.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 148 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 42/64 (65%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD VG IR R I G+SQ+KLG+ +G+TFQQ+QKY+ G +R+ ASRL + L + Sbjct: 10 VDATVGTNIRRFREISGISQKKLGDAIGVTFQQIQKYDSGKDRISASRLVETARALGCDL 69 Query: 71 SFFF 74 + F Sbjct: 70 NSLF 73 >gi|254420597|ref|ZP_05034321.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186774|gb|EDX81750.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 133 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 64/101 (63%), Gaps = 4/101 (3%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-VSPTVCSDISSE 87 +Q++L +GI FQQ+QKYE G NR+ A+RL ++E LE+P+S+F+D V+ + ++ Sbjct: 26 TQQQLAVQVGIRFQQIQKYECGANRISAARLWQLAEALETPVSYFYDGVTEALERKDAAP 85 Query: 88 ENNV--MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + S + L L + + Q+ + + R+++++L +S+ Sbjct: 86 GTSAGGGEMFSRKETLDLIQAYYQLGE-RPRRRLLDLAKSL 125 >gi|254805385|ref|YP_003083606.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254668927|emb|CBA07148.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254670077|emb|CBA04959.1| transcriptional regulator [Neisseria meningitidis alpha153] gi|254672200|emb|CBA05097.1| transcriptional regulator [Neisseria meningitidis alpha275] Length = 126 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +G++IR RR LG S EKL E + ++ QQ+ +YE+GV ++ S L I+ LE+PI Sbjct: 18 ADRLIGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETPI 77 Query: 71 SFFF-DVSPTVCSDISSEENN 90 ++FF D P + + EN Sbjct: 78 AWFFQDCLPKPLTVACTPENT 98 >gi|261392144|emb|CAX49650.1| putative HTH-type transcriptional regulator [Neisseria meningitidis 8013] Length = 117 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +G++IR RR LG S EKL E + ++ QQ+ +YE+GV ++ S L I+ LE+PI Sbjct: 9 ADRLIGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETPI 68 Query: 71 SFFF-DVSPTVCSDISSEEN 89 ++FF D P + + EN Sbjct: 69 AWFFQDCLPKPLTVACTPEN 88 >gi|329889919|ref|ZP_08268262.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845220|gb|EGF94784.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 143 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 2/62 (3%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D N +G+RIR RR LG SQ LG +G++FQQ+QKYEKG+N + A RL ++ L + Sbjct: 8 LDYNRAIGRRIRDRRKALGFSQAALGSKVGLSFQQIQKYEKGLNGLAAVRLGQLALALAT 67 Query: 69 PI 70 + Sbjct: 68 TV 69 >gi|114797386|ref|YP_760560.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114737560|gb|ABI75685.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 127 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 5/87 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P VD VG++IR R+ + +LG+ LGI+ QQ+QKYE G NR+ A L Sbjct: 8 AAGSRSPTKVDQQVGEKIRELRIAQNFTLSELGQELGISHQQLQKYETGTNRLSAGMLSS 67 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEE 88 ++ L PI+ F SD +S+E Sbjct: 68 VARALRVPIAELFQT-----SDATSQE 89 >gi|163868978|ref|YP_001610208.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018655|emb|CAK02213.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 52 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 37/51 (72%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +G+SQ+ LG LG++FQQ+QKYEKG NR+ A I++ L+ PISFF + Sbjct: 1 MGLSQKALGNFLGVSFQQIQKYEKGANRISAKCFLEIAQKLQVPISFFMKI 51 >gi|94266062|ref|ZP_01289781.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453384|gb|EAT03812.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 109 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+RIR RR +LG+SQ +L LGITFQ +Q++E+G L + +LE + Sbjct: 1 MNVGQRIRSRRQVLGLSQRELAARLGITFQAIQRWERGETFPRKETLPQLLAILEVGADW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 D+S+ +V++ + P Sbjct: 61 LVGTPSLAGPDVSTIPPDVLEAVRDP 86 >gi|148262670|ref|YP_001229376.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396170|gb|ABQ24803.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 113 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFF 73 +G R+R R G +QE+L E +G++ QQ+QKYE G N++ RLQ +++ L PI S F Sbjct: 10 IGHRLRQLRQQAGWTQERLAEQIGVSTQQIQKYECGTNKMNTDRLQQVAQALSIPIQSLF 69 Query: 74 FDVSPTV 80 D + ++ Sbjct: 70 TDTNDSL 76 >gi|83955346|ref|ZP_00964001.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83840339|gb|EAP79513.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 103 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I+ L +S FF+ Sbjct: 1 MTQQRLAELVGIKFQQIQKYETGANRVSASRLWDIAFALNVDVSHFFEGLEAEKPQPEKA 60 Query: 88 ENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +N+ D + + L R + I + + R+++ EL R Sbjct: 61 LDNIPADLSGDKEAMDLIRSYYAIPENQ-RRRLFELAR 97 >gi|255600423|ref|XP_002537454.1| conserved hypothetical protein [Ricinus communis] gi|223516285|gb|EEF24927.1| conserved hypothetical protein [Ricinus communis] Length = 89 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 3/87 (3%) Query: 44 VQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD---FISTPDG 100 +QKYE+G NR+ AS+L I+ L++P+S FF+ D ++ + + F STP+G Sbjct: 1 IQKYERGDNRISASKLYAIAVFLKTPVSVFFEGLAKPGEDGATVDGSAQAAQMFASTPEG 60 Query: 101 LQLNRYFIQIDDVKVRQKIIELVRSIV 127 ++L QI +R+ I+E++R++ Sbjct: 61 IELAGLLPQIGSQALRRHIVEIIRALA 87 >gi|89069702|ref|ZP_01157039.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] gi|89044782|gb|EAR50888.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] Length = 96 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 12/97 (12%) Query: 33 LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV-----SPTVCSDISSE 87 + E +GI FQQ+QKYE G+NRV ASRL I+ VL I FFF+ +P +D+ Sbjct: 1 MAEKVGIKFQQIQKYETGMNRVSASRLWDIASVLGVKIDFFFEGLGETETPANANDLPG- 59 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ++ + L+L R + I + + R+++ EL R Sbjct: 60 -----NILTDREALELLRSYYAIPENQ-RKRLFELAR 90 >gi|170752102|ref|YP_001758362.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658624|gb|ACB27679.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 124 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD+ +G RI R+ ++Q + +G+T Q+QKYEKG NR+ L I+++ +PI Sbjct: 9 VDVRIGGRISAARIRARLTQRTVAAEIGVTAAQLQKYEKGTNRISGVALSIIAKLTGAPI 68 Query: 71 SFFFDVSPT 79 + FFDV T Sbjct: 69 ASFFDVPET 77 >gi|329848452|ref|ZP_08263480.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843515|gb|EGF93084.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 127 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +G IR R L MSQ+ L + +G+TFQQVQKYE+G NRV AS+L I++ L SP S Sbjct: 1 MGLNIRRIRRDLNMSQQVLADRIGLTFQQVQKYERGANRVSASKLVAIAKALGVSPASLL 60 Query: 74 FD 75 D Sbjct: 61 PD 62 >gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 126 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR RR L +SQE+L L +++QQ+Q+YE G N++ +Q +++ L P+ +FF Sbjct: 12 IGAAIRRRRHELSLSQEELAARLEVSYQQIQRYESGKNKLNVENIQLVADALSVPVGYFF 71 Query: 75 DV 76 V Sbjct: 72 QV 73 >gi|222825166|dbj|BAH22323.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 110 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 68/117 (58%), Gaps = 11/117 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++Q +LG+ +G++++Q+Q+YE G N + ASRL +++ L ++ Sbjct: 1 MELGKKIKELRLYCGLTQTELGKRIGVSYRQIQRYENGSNHILASRLYDLAKALSINVAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF +D+ ++ + D + L+L + + +I ++R + LV+S S Sbjct: 61 FF-------TDVHADSHETYD----EEILKLVKGYNEIRSKRLRSVVYTLVKSFSQS 106 >gi|239947476|ref|ZP_04699229.1| helix-turn-helix domain protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921752|gb|EER21776.1| helix-turn-helix domain protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 158 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 41/158 (25%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N I +P D +R++ RR+ +G+SQ++LG+ L I+ QV+KYE+G+ SRL + Sbjct: 2 NDSIKHP-DKLASERLKERRLAVGISQKELGQALDISALQVKKYEEGL-----SRLYVFA 55 Query: 64 EVLESPISFFFDVS--PTVCSDISSEENNVMDF------------ISTPDG--------- 100 +VL + + +FF+ S + +D + NN +++ I+ +G Sbjct: 56 KVLNTSLKYFFNSSEEEKLKTDDENTSNNKIEYLFKEIESDFLNNIAEEEGQYENDISFD 115 Query: 101 ------------LQLNRYFIQIDDVKVRQKIIELVRSI 126 L L R F ++ + +R+ IIELVRS+ Sbjct: 116 YKELSRTMERELLSLTRAFTRVQNPNIRKIIIELVRSV 153 >gi|329889881|ref|ZP_08268224.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845182|gb|EGF94746.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 133 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 37/54 (68%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+R+R RR LG+SQ LG +G++ QQ+QKYE G N V ASRL +S L + Sbjct: 14 IGERVRRRRKELGLSQTALGAKIGVSCQQIQKYENGRNSVAASRLHQLSLALAT 67 >gi|290473639|ref|YP_003466511.1| transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] gi|289172944|emb|CBJ79715.1| Transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] Length = 100 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 2/67 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VD N VGKRI +R LG++ L + +GI+ QQ+ +YE+G NR+ + L IS+ L + Sbjct: 2 VDANTLVGKRICTKRKELGITATALAKQIGISQQQLSRYERGTNRININHLVVISKQLGT 61 Query: 69 PISFFFD 75 PIS+FF+ Sbjct: 62 PISWFFE 68 >gi|327191928|gb|EGE58913.1| hypothetical protein RHECNPAF_258003 [Rhizobium etli CNPAF512] Length = 114 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R+ G +Q LG+ +G+ +QQ+QKYE+G NR+ SR + +L ++ FD Sbjct: 1 MRTARLQAGYTQTALGDAVGVAYQQIQKYERGANRISLSRASQFASILRISVATLFDDPD 60 Query: 79 TVCSDISSEENNVMDFI 95 V S S + ++ Sbjct: 61 AVVSQASPPHAPLAQWM 77 >gi|148284913|ref|YP_001249003.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] gi|189183368|ref|YP_001937153.1| hypothetical protein OTT_0461 [Orientia tsutsugamushi str. Ikeda] gi|146740352|emb|CAM80780.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] gi|189180139|dbj|BAG39919.1| hypothetical protein OTT_0461 [Orientia tsutsugamushi str. Ikeda] Length = 79 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI + R+ +S+ L +G+T QQ+ KYEKG+NR+ RL I++ L + FF+ Sbjct: 15 IGNRIYMVRLEQKLSRNNLAASIGVTHQQLHKYEKGINRISIGRLMLIAKALNKNVDFFY 74 Query: 75 D 75 D Sbjct: 75 D 75 >gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] Length = 127 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 41/66 (62%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VD +GKRI+ RR LG++ L E +GI QQ+ +YE+G N++ S L I+ L++ Sbjct: 7 TDVDRFIGKRIQQRRKELGLTASALSEQIGIAQQQLSRYERGDNKINVSHLVEIATALDT 66 Query: 69 PISFFF 74 I +FF Sbjct: 67 SIGWFF 72 >gi|206889709|ref|YP_002248181.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741647|gb|ACI20704.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 107 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 10/110 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R G SQ +L E +GIT+QQ+QKYEKG +++ RL I+ L+ P+S Sbjct: 1 MKIGEIIKRLRKAKGFSQMELAEKIGITYQQLQKYEKGKSKITVDRLIDIARALDVPLS- 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + S+I +EN I + + + YF +I D ++R+ +++ Sbjct: 60 ------AILSEIYKKENIE---IYSEEEIVFLEYFRKISDPELRKSFLKI 100 >gi|240949581|ref|ZP_04753918.1| hypothetical protein AM305_11555 [Actinobacillus minor NM305] gi|240295989|gb|EER46659.1| hypothetical protein AM305_11555 [Actinobacillus minor NM305] Length = 356 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 39/70 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++L R G+S LG +GI+ ++KYE VN +S L +S+VL PI FFF Sbjct: 2 IGNRLKLARNAAGLSMAALGNAVGISANMIKKYEHNVNMPTSSILLKLSQVLHIPIEFFF 61 Query: 75 DVSPTVCSDI 84 +P I Sbjct: 62 RTTPPSLGAI 71 >gi|300721858|ref|YP_003711136.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] gi|106635962|gb|ABF82228.1| NilR [Xenorhabdus nematophila] gi|297628353|emb|CBJ88916.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] Length = 101 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 41/60 (68%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ +R L ++ L + +GI+ QQ+ +YE+G NR+ L I+++LE+PI +FF Sbjct: 8 VGQRIQTKRKELSITATALAKQIGISQQQLSRYERGTNRINLDHLVVIADILETPIDWFF 67 >gi|220925738|ref|YP_002501040.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950345|gb|ACL60737.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 149 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 42/67 (62%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G+RI R +S+E L + LGI+ Q KYEKG+NR+ A+ L + + + PI Sbjct: 10 DVHIGQRIERLRKQAKLSREALAQRLGISDSQFGKYEKGLNRMSAADLDFVGRLFDVPIG 69 Query: 72 FFFDVSP 78 +FF+ P Sbjct: 70 YFFEGLP 76 >gi|197284169|ref|YP_002150041.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227357957|ref|ZP_03842299.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194681656|emb|CAR40714.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227161692|gb|EEI46724.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 106 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 2/67 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D+N VGKRI+ RR LG + +L LG++ QQ +YE+G+N++ + L +++ L + Sbjct: 9 IDVNALVGKRIQKRRKELGYTGSQLAAKLGVSQQQFSRYERGLNKIDLTYLVLLAKFLNT 68 Query: 69 PISFFFD 75 PI +FF+ Sbjct: 69 PIYWFFE 75 >gi|222825162|dbj|BAH22319.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 115 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 48/76 (63%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++Q +LG+ +G++++Q+Q+YE G N + ASRL +++ L ++ Sbjct: 7 VQLGKKIKQLRLDRGLTQTELGKRIGVSYRQIQRYENGSNYILASRLYDLAKALSIDVAD 66 Query: 73 FFDVSPTVCSDISSEE 88 FF T + EE Sbjct: 67 FFTGMHTDSHEAYDEE 82 >gi|58699287|ref|ZP_00374078.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] gi|58534195|gb|EAL58403.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] Length = 109 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 68/118 (57%), Gaps = 11/118 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ ++Q +LG+ +G++++Q+QKYE G N V ASRL +++ L ++ Sbjct: 1 MQLGKKIKQLRLDRALTQTELGKRIGVSYRQIQKYENGSNCVLASRLYDLAKALSIDVAN 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF +D+ ++ + D + L+L + + +I ++R + LV+S S+ Sbjct: 61 FF-------TDMHTDSHEAYD----EEILKLVKGYNEIKSKRLRSAVYILVKSFSQSD 107 >gi|240949478|ref|ZP_04753818.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240296051|gb|EER46712.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 113 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 42/64 (65%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +G+RI+ +R G S EKL EC+ ++ QQ+ +YE+G +++ + L I+ ++PI Sbjct: 9 TDKLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKTPI 68 Query: 71 SFFF 74 ++FF Sbjct: 69 NWFF 72 >gi|167855531|ref|ZP_02478293.1| transcriptional regulator, XRE family protein [Haemophilus parasuis 29755] gi|219871292|ref|YP_002475667.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167853332|gb|EDS24584.1| transcriptional regulator, XRE family protein [Haemophilus parasuis 29755] gi|219691496|gb|ACL32719.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 113 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 42/64 (65%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +G+RI+ +R G S EKL EC+ ++ QQ+ +YE+G +++ + L I+ ++PI Sbjct: 9 TDKLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKTPI 68 Query: 71 SFFF 74 ++FF Sbjct: 69 NWFF 72 >gi|212711887|ref|ZP_03320015.1| hypothetical protein PROVALCAL_02962 [Providencia alcalifaciens DSM 30120] gi|212685409|gb|EEB44937.1| hypothetical protein PROVALCAL_02962 [Providencia alcalifaciens DSM 30120] Length = 103 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ RR LG+S L + L ++ QQ+ +YE GVN++ L ISE+L PI +FF Sbjct: 7 IGLRIKNRRKELGLSGANLADRLHLSQQQISRYENGVNKIPIDHLLDISEILMCPIEWFF 66 Query: 75 D 75 + Sbjct: 67 N 67 >gi|152979702|ref|YP_001345331.1| XRE family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150841425|gb|ABR75396.1| transcriptional regulator, XRE family [Actinobacillus succinogenes 130Z] Length = 114 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +G+RI+ +R +G S EKL E + ++ QQ+ +YE+G +++ + L I+ L++PI Sbjct: 9 ADKLIGQRIQQKRKEMGFSAEKLAEYIDLSQQQLSRYERGASKINVAHLIDIAIFLKTPI 68 Query: 71 SFFF-DVSP--TVCSDISSEENN 90 S+FF D P ++ +++S E++ Sbjct: 69 SWFFQDCFPNESLVNNLSMSESD 91 >gi|260663676|ref|ZP_05864565.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260551902|gb|EEX25017.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 78 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL---ESPISFFF 74 R+R R+ GM+QE++ E LGI+ K E G+ +GA+ L ISEVL IS FF Sbjct: 7 RLRAERIAKGMTQEEMAERLGISRAAYAKREAGIVDIGANELAAISEVLGIDRDHISIFF 66 Query: 75 DVSPTVCSD 83 DVS + +D Sbjct: 67 DVSSPIGND 75 >gi|307322435|ref|ZP_07601790.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306891921|gb|EFN22752.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 147 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD V IR R G+SQ+KLG+ +G+TFQQVQKYE G +R+ AS+L + L + Sbjct: 10 VDATVAN-IRRFRETSGISQKKLGDAIGVTFQQVQKYESGKDRISASKLVETARALGCDL 68 Query: 71 SFFF 74 + F Sbjct: 69 NSLF 72 >gi|170745337|ref|YP_001766794.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658938|gb|ACB27992.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 138 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 43/66 (65%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P+D ++G+RIR R + +LG LG + QQ++KYE+G++R+ AS L I+ +L+ Sbjct: 23 GPLDRDIGERIRKHRQDRRLGYGQLGGMLGFSGQQMRKYERGLSRIPASTLYVIAHILDV 82 Query: 69 PISFFF 74 P+++ Sbjct: 83 PVNYLL 88 >gi|315499434|ref|YP_004088237.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315417446|gb|ADU14086.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 276 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 42/66 (63%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD +VG R+R+RR ++ MS++ L LGIT Q++K E+G R+G L +E L+ Sbjct: 9 NEVDTHVGLRLRVRRELVQMSEDWLAGHLGITSAQLRKIEEGRARIGNRELLLCAEALDV 68 Query: 69 PISFFF 74 P +F+ Sbjct: 69 PERYFY 74 >gi|268592295|ref|ZP_06126516.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312076|gb|EFE52529.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 94 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Query: 7 IPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +PN I+ +G +I R + GM+ E L +G++ QQ +YE+G+NR+ RL H S+ Sbjct: 1 MPNYYLISKIIGNKITYYRKMKGMTLENLSNIVGVSEQQQSRYERGINRINIDRLYHYSK 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMD 93 + E I FF + ++I E ++ Sbjct: 61 IFEIDIMAFFIFNSREINEIEHAEEKYLN 89 >gi|170750881|ref|YP_001757141.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657403|gb|ACB26458.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 135 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ VG+RI +R ++Q ++ + G++ Q+QKYEKG NR+ A L Sbjct: 1 MAGQK--TDQRDVYVGQRIAEQRRKASLTQRRVAQSFGMSAAQLQKYEKGTNRISAVHLD 58 Query: 61 HISEVLESPISFFFDVSP 78 S + P+ +FF P Sbjct: 59 IFSRMTGVPMDYFFKGMP 76 >gi|163852720|ref|YP_001640763.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|218531560|ref|YP_002422376.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|163664325|gb|ABY31692.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|218523863|gb|ACK84448.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 135 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ +G+RI +R ++Q + + G++ Q+QKYEKGVNR+ A L Sbjct: 1 MAGQKT--DERDVLLGRRIAEQRKRSKLTQRAVADSFGMSAAQLQKYEKGVNRISAIHLA 58 Query: 61 HISEVLESPISFFFDVSP 78 +S + +P+S F D P Sbjct: 59 ILSRLTNTPVSDFLDGIP 76 >gi|268589692|ref|ZP_06123913.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291315003|gb|EFE55456.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 103 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 38/60 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ RR LG+S L + L ++ QQ+ +YE G+N++ + L I+E L PI +FF Sbjct: 7 IGIKIKNRRKELGLSGANLADKLNLSQQQISRYENGINKIPINHLVDIAEALNCPIEWFF 66 >gi|240140055|ref|YP_002964532.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|254562480|ref|YP_003069575.1| transcriptional regulator [Methylobacterium extorquens DM4] gi|240010029|gb|ACS41255.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|254269758|emb|CAX25730.1| putative transcriptional regulator [Methylobacterium extorquens DM4] Length = 140 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ +G+RI +R ++Q + + G++ Q+QKYEKGVNR+ A L Sbjct: 6 MAGQKT--DERDVLLGRRIAEQRKRSKLTQRAVADSFGMSAAQLQKYEKGVNRISAIHLA 63 Query: 61 HISEVLESPISFFFDVSP 78 +S + +P+S F D P Sbjct: 64 ILSRLTNTPVSDFLDGIP 81 >gi|261343818|ref|ZP_05971463.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282568202|gb|EFB73737.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 103 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ RR LG+S L L ++ QQ+ +YE G+N++ L I+++L PI +FF Sbjct: 7 IGTRIKNRRKELGLSGANLASKLNLSQQQISRYENGINKIPIDHLLDIADILMCPIEWFF 66 >gi|188582745|ref|YP_001926190.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346243|gb|ACB81655.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ +G+RI +R ++Q + + G++ Q+QKYEKGVNR+ A L Sbjct: 1 MAGQKT--DERDVLLGRRIAEQRKRSKLTQRAVADSFGMSAAQLQKYEKGVNRISAIHLA 58 Query: 61 HISEVLESPISFFFDVSP 78 + + +PIS F D P Sbjct: 59 ILGRLTNTPISEFLDGIP 76 >gi|300724595|ref|YP_003713920.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] gi|22094605|gb|AAM91936.1|AF525420_7 putative repressor of flagellae [Xenorhabdus nematophila] gi|297631137|emb|CBJ91828.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 41/65 (63%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + VGKRI+++R G++ +L + +G++ QQ+ +YE+G N++ L IS L +P Sbjct: 3 VSMLVGKRIQIKRKETGVTAAELADKIGVSHQQLSRYERGTNKISLEHLVAISIALNTPA 62 Query: 71 SFFFD 75 +F + Sbjct: 63 DWFLE 67 >gi|284006480|emb|CBA71741.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 96 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 40/64 (62%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + IN+GK I+ +R G+S E L + +G++ Q + +YE+GVN + + L I++ L PI Sbjct: 3 ISINIGKMIKFKRKEKGLSGELLAKKIGVSQQPLSRYERGVNDIKVNTLYSITQALNIPI 62 Query: 71 SFFF 74 FF Sbjct: 63 DSFF 66 >gi|114762814|ref|ZP_01442246.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114544424|gb|EAU47431.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 130 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 11/111 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFFDV 76 ++RL R G++Q +L + +G QQ+ +YE G R+ A++L IS+ L+ P+ FF D Sbjct: 8 QLRLYRRSAGLTQNELAKRIGAHVQQIYRYETGAGRIPAAQLWLISQALDMPLDQFFIDA 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +S +E V D + T L ++ + R +IEL+R++ Sbjct: 68 D----MPVSEQEQAVFDDVRTAATL------LRPLAPEQRNAVIELLRTMA 108 >gi|23168698|gb|AAN08677.1| transcriptional regulator [Anaplasma marginale str. Florida] Length = 148 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 16/122 (13%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-----DVSP-TV 80 GMS+ + LGITFQQVQKYEKG NR+ SRL ++ VL I D+ P T Sbjct: 3 GMSRNQPASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLIAKLQNDLRPITD 62 Query: 81 CSDIS------SEENNVMDF-ISTPDG---LQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 D + EE+++ +F S DG L L R + +I K+R I LV+ + + + Sbjct: 63 AGDATDAALREGEESSLEEFGQSYNDGKEVLMLVRAYRRIKSDKMRGAIHTLVKVMCAEQ 122 Query: 131 KK 132 ++ Sbjct: 123 QQ 124 >gi|85704294|ref|ZP_01035397.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217] gi|85671614|gb|EAQ26472.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217] Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D+ VG+ +R R+ G + L G+T QQ+QKYE G NRV SRL +S L Sbjct: 6 NDIDVIVGRVLRRTRLASGHTMTSLAAQCGVTHQQLQKYESGSNRVSVSRLFILSNALGI 65 Query: 69 PISFFFD 75 P + D Sbjct: 66 PPAELID 72 >gi|261345516|ref|ZP_05973160.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566568|gb|EFB72103.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 106 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 38/60 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ RR LG+S L + L I+ QQ+ +YE G+N++ + L I+ L+ PI +FF Sbjct: 7 IGIKIKARRKELGLSGAGLAKILNISQQQISRYENGINKIPLNHLVSIAVALKCPIDWFF 66 >gi|226328868|ref|ZP_03804386.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] gi|225202054|gb|EEG84408.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] Length = 112 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 11 VDINV----GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 DINV GKRI+ +R LG + ++ + +G++ QQ +YE+G+N++ S L ++ L Sbjct: 13 TDINVNALVGKRIQKKRKELGYTGMQIAKKIGVSQQQFSRYERGMNKIDLSYLVLLANYL 72 Query: 67 ESPISFFFD 75 +PI +FF+ Sbjct: 73 NTPIYWFFE 81 >gi|183599041|ref|ZP_02960534.1| hypothetical protein PROSTU_02486 [Providencia stuartii ATCC 25827] gi|188021257|gb|EDU59297.1| hypothetical protein PROSTU_02486 [Providencia stuartii ATCC 25827] Length = 104 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 38/60 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ RR LG+S L + L I+ QQV +YE G+N++ + L I+ L+ PI +FF Sbjct: 7 IGIKIKTRRKELGLSGADLAKKLNISQQQVSRYENGINKIPLNHLVSIAIALKCPIDWFF 66 >gi|307315880|ref|ZP_07595384.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306898470|gb|EFN29153.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 123 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 34/56 (60%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D +G IR R I G+SQ KLG +G+TFQQVQK E G +R+ + +L + L Sbjct: 10 ADAALGTNIRRFREISGISQNKLGAAIGVTFQQVQKDESGKDRISSKKLVETARTL 65 >gi|197284179|ref|YP_002150051.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194681666|emb|CAR40739.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 106 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +VGK+I+ +R LG + +L + +G++ QQ +YE+G+N++ L ++ L +PI Sbjct: 11 VNASVGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVLLALYLNTPI 70 Query: 71 SFFFD---VSPTVCSDISSEENNVMDFISTPDGLQ 102 +FF+ V ++ ++ N + +TPD Sbjct: 71 YWFFEDCYVKKPSLNNKGIDKRNYVIAQATPDAFH 105 >gi|227357946|ref|ZP_03842289.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|6453635|emb|CAB61440.1| mrpJ [Proteus mirabilis HI4320] gi|227161855|gb|EEI46884.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 107 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +VGK+I+ +R LG + +L + +G++ QQ +YE+G+N++ L ++ L +PI Sbjct: 12 VNASVGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVLLALYLNTPI 71 Query: 71 SFFFD---VSPTVCSDISSEENNVMDFISTPDGLQ 102 +FF+ V ++ ++ N + +TPD Sbjct: 72 YWFFEDCYVKKPSLNNKGIDKRNYVIAQATPDAFH 106 >gi|262276707|ref|ZP_06054501.1| transcriptional regulator, Cro/CI family [alpha proteobacterium HIMB114] gi|262225129|gb|EEY75587.1| transcriptional regulator, Cro/CI family [alpha proteobacterium HIMB114] Length = 104 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 34/47 (72%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +SQ ++G+ + TFQQ+QKYEKG N++ AS++ +SE P+S +F Sbjct: 36 ISQTQVGKYMNCTFQQIQKYEKGKNQLSASKIYKLSEFFNIPVSSWF 82 >gi|183598411|ref|ZP_02959904.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] gi|188020590|gb|EDU58630.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] Length = 76 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M GN P +I VGK+I+ R + ++ E+LG +G++ QQ+ +YE GVN + L Sbjct: 1 MSGNIIKPT-FNIIVGKKIKRYRKEMNLTAEELGRYIGVSQQQISRYESGVNHINIDFLS 59 Query: 61 HISEVLESPISFFF 74 +SE+ + PI F Sbjct: 60 QLSELFKVPIQVFL 73 >gi|251777920|ref|ZP_04820840.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082235|gb|EES48125.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 376 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 42/68 (61%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R++ G+SQE+LG+ +G+T Q + EK + + L +SE L+ P+SFF+ Sbjct: 10 GQRIKQGRILRGLSQEQLGKKVGVTRQAISNCEKDNINLSTTNLLKLSETLDLPLSFFYR 69 Query: 76 VSPTVCSD 83 + SD Sbjct: 70 IPEEDNSD 77 >gi|119385143|ref|YP_916199.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119374910|gb|ABL70503.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 108 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 32/42 (76%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 MSQ+++ E +G++ QQ+QKYE VNR+ ASRL I+ VL+ P Sbjct: 1 MSQKQVAERIGVSMQQLQKYETAVNRISASRLVEIANVLQVP 42 >gi|296491936|ref|YP_003662403.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] gi|289176823|emb|CBJ92992.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] Length = 291 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G RI++ R + ++ LG +G++ QQ+ + E G NR+ L +I+ L PIS+F Sbjct: 107 NIGLRIQIWRKTMMLTAAALGLSVGLSQQQISRNEHGKNRIHIDHLVNIALALGIPISWF 166 Query: 74 F-----DVSPTVCSDISSEENNVMD 93 F D+ S + + +MD Sbjct: 167 FIDCHPDLEVNTSSHLPTTPTKIMD 191 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+RIR+RR L ++ + L + G+ Q + +YE G R+ ++ L I+ L +PI +F Sbjct: 201 NIGQRIRVRRKKLNVTLQGLAKQAGMNQQTLSRYETGKKRITSTDLVIIAIALNTPIDWF 260 Query: 74 F 74 F Sbjct: 261 F 261 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+R+ +RR G+S L + GI+ Q+ YE G++ + S L IS L +P +F Sbjct: 12 SIGQRVCIRRKEAGLSTHTLAQHTGISEAQLIMYETGLDDIPLSHLIQISAGLNTPTGWF 71 Query: 74 F 74 F Sbjct: 72 F 72 >gi|170743390|ref|YP_001772045.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197664|gb|ACA19611.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 149 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 39/67 (58%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++G+RI R+ + ++ + LGI+ Q KYEKG NR+ A+ L + + + PI Sbjct: 10 DAHIGQRIEQLRLKAKIPRDVVAGRLGISASQFGKYEKGANRMSAADLDAVGRLFDVPIG 69 Query: 72 FFFDVSP 78 +FF+ P Sbjct: 70 YFFEGMP 76 >gi|133711095|gb|ABO36239.1| hypothetical translational regulator [Ehrlichia ewingii] Length = 118 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/37 (62%), Positives = 27/37 (72%) Query: 30 QEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 Q +L LGITFQQVQKYEKG NR+ SRL ++ VL Sbjct: 1 QNQLANKLGITFQQVQKYEKGTNRIVISRLYQLASVL 37 >gi|290476510|ref|YP_003469415.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] gi|289175848|emb|CBJ82651.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] Length = 92 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 42/65 (64%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + VGKRI+++R +GM+ +L + + ++ QQ+ +YE+G N++ L +S L++P Sbjct: 3 VSMLVGKRIQIKRKEIGMTVAELADRISVSQQQLSRYERGTNKISLEHLVDVSIALKTPA 62 Query: 71 SFFFD 75 +F + Sbjct: 63 DWFLE 67 >gi|226330186|ref|ZP_03805704.1| hypothetical protein PROPEN_04099 [Proteus penneri ATCC 35198] gi|225200981|gb|EEG83335.1| hypothetical protein PROPEN_04099 [Proteus penneri ATCC 35198] Length = 94 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 42/72 (58%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K I ++ +G RI +R G + ++ LGI+ QQ +YE+G N++ +L IS Sbjct: 3 DKNIKLSINEVIGNRISKKRREQGWTGNQVASLLGISQQQFSRYERGRNQISVYQLMKIS 62 Query: 64 EVLESPISFFFD 75 +L + I++FFD Sbjct: 63 RILNTSINWFFD 74 >gi|212709228|ref|ZP_03317356.1| hypothetical protein PROVALCAL_00263 [Providencia alcalifaciens DSM 30120] gi|212688140|gb|EEB47668.1| hypothetical protein PROVALCAL_00263 [Providencia alcalifaciens DSM 30120] Length = 83 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 40/64 (62%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + ++G ++R RR++LG S LG+ G++ QQ+ +YE+G SRL + VL+ ++ Sbjct: 10 NTDIGAKVRKRRLLLGWSASILGKKTGLSQQQISRYERGTQNFTISRLCIFANVLQCDLN 69 Query: 72 FFFD 75 +F + Sbjct: 70 YFLE 73 >gi|295135558|ref|YP_003586234.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294983573|gb|ADF54038.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 140 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 13/120 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L LGI+ Q V EK N V L+ ISEVL Sbjct: 21 HIGRKISRIRELRGMKQEALAAELGISQQSVSNLEKSEN-VDEGTLKKISEVL------- 72 Query: 74 FDVSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +VSP + E N+++ + N YF ID V +KI+EL +V +EK+ Sbjct: 73 -NVSPEAIRHFTEEAVFNIINNTFKDNSANNNNYFCTIDPV---EKIVELYERLVQAEKE 128 >gi|110347043|ref|YP_665861.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283154|gb|ABG61214.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 154 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SP 69 ++ ++G+ +R +R +++E+L +G++ Q +YEK ++++ +RL H+ E+L+ SP Sbjct: 44 METSLGRALRAKRSERKLTREQLATMIGLSTQVFGRYEKAISKMNVTRLIHLCEILDVSP 103 Query: 70 ISFFFDVSPTVCSDISSE 87 + ++ +P + D E Sbjct: 104 VDLIYEAAPHLFGDTPQE 121 >gi|22023151|gb|AAM88940.1|AF313446_1 putative transcriptional regulator [Rhizobium etli] Length = 94 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 5/77 (6%) Query: 59 LQHISEVLESPISFFFD---VSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDV 113 LQ I+EVL + SFFF+ P ++ + + V +F+ T +GL LNR F++I D Sbjct: 1 LQRIAEVLHTSPSFFFEQNESQPLSLQGLALPDGADPVAEFLRTKEGLVLNRAFLKIADP 60 Query: 114 KVRQKIIELVRSIVSSE 130 +R+ II LV+++ +E Sbjct: 61 DIRETIIALVKAMAQAE 77 >gi|226328632|ref|ZP_03804150.1| hypothetical protein PROPEN_02527 [Proteus penneri ATCC 35198] gi|225203365|gb|EEG85719.1| hypothetical protein PROPEN_02527 [Proteus penneri ATCC 35198] Length = 73 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G++I R + G+S ++L +G++ QQ +YE+GVNR+ RL +E+ Sbjct: 6 PVSKAIGRKITYYRKMKGISLDELAALIGVSQQQQSRYERGVNRINLDRLNQYAEIFNIH 65 Query: 70 ISFFF 74 I FF Sbjct: 66 IKDFF 70 >gi|317484279|ref|ZP_07943203.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924460|gb|EFV45622.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 272 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 14/93 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL------ 66 +N+G +I+ RR +G+SQE L + G++ Q V K+E G + RL +S+VL Sbjct: 6 LNIGGKIQARRKAMGLSQEDLAQLTGVSRQSVTKWETGQSAPDLDRLVEVSDVLGVSLDF 65 Query: 67 --------ESPISFFFDVSPTVCSDISSEENNV 91 SP SF SP D S + V Sbjct: 66 LLREPQQVSSPPSFAVADSPPFAEDGSPGASGV 98 >gi|222087278|ref|YP_002545813.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724726|gb|ACM27882.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 43/68 (63%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +VG+++R+ RM +SQ +LG+ +G+ QQ++++E NR+ + L ++ L PI Sbjct: 36 IDRHVGQQLRIIRMHSNLSQTELGQLVGLRHQQIEQFESSKNRMNTAVLCEVANCLNVPI 95 Query: 71 SFFFDVSP 78 + F+ P Sbjct: 96 ARVFEALP 103 >gi|160885067|ref|ZP_02066070.1| hypothetical protein BACOVA_03064 [Bacteroides ovatus ATCC 8483] gi|298483201|ref|ZP_07001381.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] gi|156109417|gb|EDO11162.1| hypothetical protein BACOVA_03064 [Bacteroides ovatus ATCC 8483] gi|298270718|gb|EFI12299.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] Length = 139 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 9/130 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL--ESPIS 71 +VG+ ++ R+ LGM QE L LG++ Q++ K EK + + L I+EVL + + Sbjct: 13 HVGRNLQRIRVYLGMKQEALASDLGVSQQEISKIEKQ-DEIEDGLLTKIAEVLGISTDVI 71 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FDV +C+ NN D +P G Y + +K++EL ++ SE+ Sbjct: 72 KDFDVEKAICNI-----NNYKDATISP-GATATVYAAHTQQINPLEKVVELYERLLKSEQ 125 Query: 132 KYRTIEEECM 141 + I EC+ Sbjct: 126 EKIEILRECI 135 >gi|58699199|ref|ZP_00374010.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534286|gb|EAL58474.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 119 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 12/125 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E LG+ + + +YEKG R+ RL I+E L Sbjct: 5 VEKSLDYKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I+ D+ P S + E +++ + R + +I+D ++R+ L + Sbjct: 65 SISIT---DLIPISKSCLEDEGEEILNLV---------REYKKINDQELRKMFCLLTNFV 112 Query: 127 VSSEK 131 SEK Sbjct: 113 PVSEK 117 >gi|218516214|ref|ZP_03513054.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 89 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 31/42 (73%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G Sbjct: 47 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESG 88 >gi|58696656|ref|ZP_00372210.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58699194|ref|ZP_00374006.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630362|ref|YP_002727153.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630756|ref|YP_002727547.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|58534290|gb|EAL58477.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58537180|gb|EAL60282.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|225592343|gb|ACN95362.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592737|gb|ACN95756.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 302 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E LG+ + + +YEKG R+ RL I+E L Sbjct: 5 VEKSLDYKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I+ +S + D E L L R + +I+D ++R+ L + Sbjct: 65 SISITDLIPISKSCLEDEGEE------------ILNLVREYKKINDQELRKMFCLLTNFV 112 Query: 127 VSSEK 131 SEK Sbjct: 113 QVSEK 117 >gi|42520475|ref|NP_966390.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410214|gb|AAS14324.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 302 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 12/125 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E LG+ + + +YEKG R+ RL I+E L Sbjct: 5 VEKSLDYKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I+ +S + D E L L R + +I+D ++R+ L + Sbjct: 65 SISITDLIPISKSCLEDEGEE------------ILNLVREYKKINDQELRKMFCLLTNFV 112 Query: 127 VSSEK 131 SEK Sbjct: 113 QVSEK 117 >gi|268591032|ref|ZP_06125253.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313838|gb|EFE54291.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 88 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K I N V N+GK+I+L R +S L +GI+ QQ+ +YE G++ + S++ IS Sbjct: 16 KNITNIVAKNIGKKIKLLRSEYRLSGSDLARIIGISQQQLSRYENGLSDISTSKIMLISV 75 Query: 65 VLESPISFFF 74 + + +FF Sbjct: 76 YFKVDVCYFF 85 >gi|150378104|ref|YP_001314699.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032651|gb|ABR64766.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 139 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 34/49 (69%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 D +G I R I G+SQ++LG+ +G+TFQQV+KYE G +R+ + +L Sbjct: 10 ADAALGTNICRFREISGISQKELGDAIGVTFQQVRKYESGKDRISSKKL 58 >gi|222055067|ref|YP_002537429.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564356|gb|ACM20328.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 115 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 7/73 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R G+SQEKL E +G++ Q+QKYE G +++ +LQ +++ L + FF Sbjct: 13 LGNQLRER---AGISQEKLAEHVGVSKGQIQKYEYGKDKMNTDKLQRVADALSVSVQEFF 69 Query: 75 ----DVSPTVCSD 83 DV P S+ Sbjct: 70 ATGEDVLPLAVSE 82 >gi|169349664|ref|ZP_02866602.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] gi|169293739|gb|EDS75872.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] Length = 206 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 20/115 (17%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 G+RI+ R G++QE+LG LG+ + KYE V + +Q +SE+ E P ++F Sbjct: 2 TGQRIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKETIQKLSEIFEVPATYF 61 Query: 74 FDVS----PTVCSDISSE-------------ENNVMDFISTPDG-LQLNR-YFIQ 109 + PT+ + I+ ++N+ ++I+ P+ L LN+ YF Q Sbjct: 62 LGIDETNQPTITNSITIPLYNDISCGTGIFVDDNIDEYIALPESLLTLNKEYFCQ 116 >gi|220927095|ref|YP_002502397.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951702|gb|ACL62094.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] Length = 84 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 8/82 (9%) Query: 47 YEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 YEKG+NRVGA RLQ I+++LE P+S + SD V+ ++TP +L + Sbjct: 7 YEKGLNRVGAGRLQAIADLLEVPVSTLYGGDGHAGSD-------VVALLNTPHAAELLQL 59 Query: 107 FIQIDDVKVRQKIIELVRSIVS 128 F + R ++ + R ++ Sbjct: 60 FDAM-PATYRGSLLTIARGLLG 80 >gi|319945880|ref|ZP_08020130.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747945|gb|EFW00189.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] Length = 228 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LGIT+Q +E+GV + +++ + ++L+ PI +F ++ Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKKPSKEKVKLLEQILDVPIGYFTEL 64 Query: 77 SPTVCSDISSEE--NNVMDFI 95 + S+E NN + ++ Sbjct: 65 EIVRLYNTLSDEGKNNALSYV 85 >gi|192361971|ref|YP_001984171.1| MrfJ protein [Cellvibrio japonicus Ueda107] gi|190688136|gb|ACE85814.1| MrfJ protein [Cellvibrio japonicus Ueda107] Length = 131 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G R++ R +S L + +G T QQ+ +YE G N++ A++L +++ L PI Sbjct: 9 LDRQIGLRLKKLRQQADISAVALADAIGSTQQQISRYENGQNKLSAAQLYLLAQSLCVPI 68 Query: 71 SFFF-DVSP 78 S+FF D P Sbjct: 69 SWFFLDCDP 77 >gi|153011903|ref|YP_001373116.1| helix-turn-helix domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151563791|gb|ABS17287.1| helix-turn-helix domain protein [Ochrobactrum anthropi ATCC 49188] Length = 176 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 + +IR R I M + L LG+ Q + +YEK +++ +RL H+ EVL+ SP+ Sbjct: 54 ISSQIRELREIREMPRTVLAPLLGLHHQVLSRYEKATSKLTVARLIHLCEVLDTSPMELL 113 Query: 74 FDVSPTVCSDISSEE---NNVMDFISTPDGLQLNRY--FIQ 109 + V+P + + + E ++ D + T D L L FIQ Sbjct: 114 YPVAPHLFGETAQEAEMTKSIYDKLRTLDALTLAAISNFIQ 154 >gi|268591879|ref|ZP_06126100.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312853|gb|EFE53306.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 82 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V N +I N +G+++R RR++LG S LG+ G++ QQ+ +YE+G RL Sbjct: 3 VYNTEISNSF---IGQQVRKRRLLLGWSASTLGKKSGLSQQQISRYERGTQNFTIYRLCI 59 Query: 62 ISEVLESPISFFF 74 + +LE +++F Sbjct: 60 FANILECDLNYFL 72 >gi|295098436|emb|CBK87526.1| Helix-turn-helix [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 102 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 4/73 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQH 61 K NP + +R++ R+ + +SQ+ LG GI ++ +YEKGV++ ++H Sbjct: 2 KTSNPHNQLFSRRLKEVRLDMALSQKSLGILAGIDEFAASARINRYEKGVHQASIEVVRH 61 Query: 62 ISEVLESPISFFF 74 +++VLE P+++F+ Sbjct: 62 LAKVLEVPVAYFY 74 >gi|238027673|ref|YP_002911904.1| putative phage repressor [Burkholderia glumae BGR1] gi|237876867|gb|ACR29200.1| Putative phage repressor [Burkholderia glumae BGR1] Length = 241 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 28/154 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RIR +R+ G++ +++G+ GI+ V +E+G R +L ++ +L++ I+F Sbjct: 1 MDIGSRIREKRLAHGLTLQQVGDMFGISRSAVASWERGATRPDQDKLPRLARILKTSIAF 60 Query: 73 FF------DV----SPTVCSDISSEENNVMDFISTP---DGLQLNRY---FIQIDDVKVR 116 D+ SPT +++ + +D + P D +Q++R+ +++R Sbjct: 61 LLSGERRHDIGGSDSPTDDDEVTEDNGYTLD--APPLRSDIVQISRFDTGGAMGSGIELR 118 Query: 117 QK--IIELVRSIVSSE------KKYRTIEEECMV 142 + IIE +R VS E K Y ++E C+V Sbjct: 119 DQPGIIETLR--VSHEWINKNLKNYSSVENLCVV 150 >gi|325662713|ref|ZP_08151310.1| hypothetical protein HMPREF0490_02050 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471052|gb|EGC74279.1| hypothetical protein HMPREF0490_02050 [Lachnospiraceae bacterium 4_1_37FAA] Length = 180 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 38/74 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R I G+SQE LG GI ++KYE G+ +L I+ L I+ Sbjct: 1 MTVGEKIKYYRNIRGISQEMLGNLSGINPATIKKYEYGIRNPKPDQLLKITNALGISINL 60 Query: 73 FFDVSPTVCSDISS 86 F D SD+ S Sbjct: 61 FMDFDIETVSDVLS 74 >gi|167755401|ref|ZP_02427528.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|237733631|ref|ZP_04564112.1| SOS-response transcriptional repressor [Mollicutes bacterium D7] gi|167704340|gb|EDS18919.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|229383229|gb|EEO33320.1| SOS-response transcriptional repressor [Coprobacillus sp. D7] Length = 206 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 20/118 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 G+RI+ R G++QE+LG LG+ + KYE V + +Q +SE+ + P S+F Sbjct: 2 TGERIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKDTIQKLSEIFDVPASYF 61 Query: 74 FDVSPT------------VCSDISSE-----ENNVMDFISTPDGL--QLNRYFIQIDD 112 + + + SDIS ++NV ++IS P+ L YF Q D Sbjct: 62 LGIDESNQPIITDSITIPLYSDISCGTGLFVDDNVDEYISLPETLLSPSKEYFCQYAD 119 >gi|210610934|ref|ZP_03288659.1| hypothetical protein CLONEX_00849 [Clostridium nexile DSM 1787] gi|210152234|gb|EEA83241.1| hypothetical protein CLONEX_00849 [Clostridium nexile DSM 1787] Length = 157 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 38/74 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R I G+SQE LG GI ++KYE G+ +L I+ L I+ Sbjct: 1 MTVGEKIKYYRNIRGISQEMLGNLSGINPATIKKYEYGIRNPKPDQLLKITNALGISINL 60 Query: 73 FFDVSPTVCSDISS 86 F D SD+ S Sbjct: 61 FMDFDIETVSDVLS 74 >gi|160943186|ref|ZP_02090422.1| hypothetical protein FAEPRAM212_00671 [Faecalibacterium prausnitzii M21/2] gi|158445425|gb|EDP22428.1| hypothetical protein FAEPRAM212_00671 [Faecalibacterium prausnitzii M21/2] Length = 392 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ L R I +S KL E +G+T Q V +YE G+ + A ++ IS+ L+ P FFF+ Sbjct: 11 GMRLTLAREIQNISSPKLAEKIGVTKQTVSQYENGLIKPSADKVLAISQELKFPPKFFFE 70 Query: 76 VS 77 S Sbjct: 71 GS 72 >gi|190570721|ref|YP_001975079.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356993|emb|CAQ54382.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 304 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 12/125 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG R+ RL I+E L Sbjct: 5 VEKSLDCEVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I+ +S + D E L L R + +I+D ++R+ L + Sbjct: 65 SISITDLIPISKSCLEDEGEE------------ILNLVREYKKINDQELRKMFCLLTNFV 112 Query: 127 VSSEK 131 SEK Sbjct: 113 QISEK 117 >gi|268592288|ref|ZP_06126509.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291312067|gb|EFE52520.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 92 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G +I+ R G+S L + +GI+ QQ +YE+G NR+ RL+ S + Sbjct: 6 PVSAVIGNKIKSLRKNKGLSLTALAKTVGISEQQQLRYERGNNRISIDRLKQYSNYFDIN 65 Query: 70 ISFFFDVS 77 I +FF S Sbjct: 66 IIYFFSFS 73 >gi|268592297|ref|ZP_06126518.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291312078|gb|EFE52531.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 73 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +GK+I R G+S +L E +GI+ QQ +YE+GVNR+ RL + Sbjct: 1 MPYSTSHLIGKKILYYRKTNGLSVNELSEVIGISPQQQSRYERGVNRITLDRLFQYATYF 60 Query: 67 ESPISFFF 74 E I FF Sbjct: 61 EIDIKTFF 68 >gi|213019728|ref|ZP_03335533.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994769|gb|EEB55412.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 300 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 12/125 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG R+ RL I+E L Sbjct: 1 MEKSLDCEVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I+ +S + D E L L R + +I+D ++R+ L + Sbjct: 61 SISITDLIPISKSCLEDEGEE------------ILNLVREYKKINDQELRKMFCLLTNFV 108 Query: 127 VSSEK 131 SEK Sbjct: 109 QISEK 113 >gi|197303199|ref|ZP_03168241.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] gi|197297739|gb|EDY32297.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] Length = 108 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ +R+ G++QEK E + ++ + + E+G+++V RL ISE I FF Sbjct: 8 LGDRIKTKRISQGITQEKFAEHMDVSVGYISQLERGISKVSLERLVSISEYFNCNIDFFI 67 Query: 75 D 75 D Sbjct: 68 D 68 >gi|307133110|ref|YP_003885126.1| putative transcriptional regulator [Dickeya dadantii 3937] gi|306530639|gb|ADN00570.1| Putative transcriptional regulator [Dickeya dadantii 3937] Length = 106 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQ 60 K PN D+ +R++ R+ G+SQ+KLG GI ++ +YEKGV+ Q Sbjct: 2 KSRPNYHDV-FCQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIDTAQ 60 Query: 61 HISEVLESPISFFF 74 +++ L+ P++FF+ Sbjct: 61 QLADALDVPLAFFY 74 >gi|200389135|ref|ZP_03215747.1| I C protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199606233|gb|EDZ04778.1| I C protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 107 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ++LG GI ++ +YEKGV+ G +Q ++EVL P+++ Sbjct: 13 RRLKQARLASGLSQKRLGIAAGIDEFVASTRINRYEKGVHEPGTEIVQKLAEVLRVPLAY 72 Query: 73 FF 74 F+ Sbjct: 73 FY 74 >gi|146296429|ref|YP_001180200.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410005|gb|ABP67009.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 11/107 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++++ R G++QE++ + LGI Q+ YE GV + LQ ++++ +++FF Sbjct: 10 IGQKLQEARKKAGLTQEQVADYLGINKVQLSYYENGVREISIGTLQQLADLYGYTLNYFF 69 Query: 75 D----VSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D P V E E ++ I+ NR+ I ++ +K+ Sbjct: 70 DDEKSTDPAVSFSFRGEELEKEDLEVIAMA-----NRFLINLEQMKM 111 >gi|271502480|ref|YP_003335506.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270346035|gb|ACZ78800.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 106 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ+KLG GI ++ +YEKGV+ Q +S+ L+ P++F Sbjct: 13 QRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIDTAQQLSDALDVPLAF 72 Query: 73 FF 74 F+ Sbjct: 73 FY 74 >gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] Length = 100 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK IR RR LG+S +L +GI+ QQV +YE+G + L +++ LE+ + FF Sbjct: 8 VGKEIRKRRKELGLSGAELAGLVGISQQQVSRYERGECNITLDNLLSLAKALETDLICFF 67 Query: 75 D 75 + Sbjct: 68 N 68 >gi|154497138|ref|ZP_02035834.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] gi|150273537|gb|EDN00665.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] Length = 417 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RI L+R LG+SQE LG+ LG++ Q + K+E + +L +S + P+ + Sbjct: 1 MTVGQRIALKRKELGLSQEGLGDKLGVSRQAIYKWESDASLPEVEKLVALSRIFSVPVGW 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|331086447|ref|ZP_08335527.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406213|gb|EGG85736.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 179 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++I+ R + G+SQE LG+ GI ++KYE G+ +L I+ L I+ Sbjct: 1 MTTGEKIKYFRNMRGISQETLGQLSGINSSTIKKYEYGIRNPKPDQLLKIANALGISINI 60 Query: 73 FFDVSPTVCSDISS 86 F D SD+ S Sbjct: 61 FMDFDIETVSDVLS 74 >gi|226328630|ref|ZP_03804148.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] gi|225203363|gb|EEG85717.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] Length = 97 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 13/89 (14%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKKI V GK+IR R + M+ ++LG LGI+ Q +YE G + A L Sbjct: 7 NKKISKLV----GKKIRSLREMYCMTGDELGALLGISQQHQSRYENGETNIHAETLY--- 59 Query: 64 EVLESPISFFFDVSP-TVCSDISSEENNV 91 +S+FFDV P SD+ E+N + Sbjct: 60 -----CLSYFFDVEPEYFLSDLLIEDNKL 83 >gi|225374593|ref|ZP_03751814.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans DSM 16841] gi|225213545|gb|EEG95899.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans DSM 16841] Length = 179 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++I+ R + G+SQE LG+ GI ++KYE G+ +L I+ L I+ Sbjct: 1 MTTGEKIKYFRNMRGISQETLGQLSGINSATIKKYEYGIRNPKPDQLLKIANALGISINI 60 Query: 73 FFDVSPTVCSDISS 86 F D SD+ S Sbjct: 61 FMDFDIETVSDVLS 74 >gi|262282955|ref|ZP_06060722.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261207|gb|EEY79906.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 121 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 15/120 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLE-SPI 70 +NVG+RI+ RR L MS + L E +G++ + +YEKG + +VG L+ I++ L SP Sbjct: 1 MNVGERIKQRRKELKMSADALSERVGVSRSTIFRYEKGDIEKVGPEVLKKIADTLNISPA 60 Query: 71 SFF------FDVSPTVCSDISSEEN--NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D + ++ +E + + + T DG LN +D++ QKIIE+ Sbjct: 61 QLMGWEEQNADRKGAIATNNYNETDLRKMAENAKTFDGKPLNE-----EDIQAIQKIIEI 115 >gi|210610650|ref|ZP_03288550.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] gi|210152372|gb|EEA83378.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] Length = 124 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 39/69 (56%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P +++GKR+R+ R+ +QE+ E LG++ K E+G + + +L H+ E Sbjct: 15 KAPDPFYVDMGKRLRIVRIKANYTQEQFAEILGMSTAYYGKIERGEHGLSLKKLVHVYEK 74 Query: 66 LESPISFFF 74 L I++ Sbjct: 75 LNIDINYLL 83 >gi|296877345|ref|ZP_06901385.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431865|gb|EFH17672.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 228 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/81 (23%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++++RR L ++Q+ + + LG+++Q +E+GV + ++Q + ++L P FF ++ Sbjct: 5 EKLKIRRKELKLTQKDIADQLGVSYQAYSAWERGVKQPSREKVQQLEQILNVPKGFFTEI 64 Query: 77 SPTVCSDISSEE--NNVMDFI 95 + S+E NN + ++ Sbjct: 65 EIVRLYNTLSDEGKNNALSYV 85 >gi|266626094|ref|ZP_06119029.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288861999|gb|EFC94297.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 102 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI---- 70 +GKRI R + G+SQEK+ E +GI+ Q V K+E +R L +S + E P+ Sbjct: 4 LGKRIAYYRKLQGLSQEKVAEHIGISRQAVTKWENDNSRPNTDNLLQLSALFEIPLNELV 63 Query: 71 -SFFFDVSP 78 S+ D SP Sbjct: 64 SSYSEDHSP 72 >gi|312868402|ref|ZP_07728602.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096147|gb|EFQ54391.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 228 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 42/72 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LGIT+Q +E+GV + ++Q + ++L P +F ++ Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKQPSREKVQQLEQILNVPKGYFTEL 64 Query: 77 SPTVCSDISSEE 88 +I S+E Sbjct: 65 EIARLYNILSDE 76 >gi|295084668|emb|CBK66191.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 138 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL--ESPIS 71 +VG+ ++ R+ LGM QE L LG++ Q++ K EK + + L I+EVL + + Sbjct: 13 HVGRNLQRIRVYLGMKQEALASDLGVSQQEISKIEKQ-DEIEDGLLTKIAEVLGISTDVI 71 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FDV +C+ NN D +P + + + +K++EL ++ SE+ Sbjct: 72 KDFDVEKAICNI-----NNYKDATISPGAIAT--VYAHNQQINPLEKVVELYERLLKSEQ 124 Query: 132 KYRTIEEECM 141 + I EC+ Sbjct: 125 EKIEILRECI 134 >gi|225026540|ref|ZP_03715732.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353] gi|224956154|gb|EEG37363.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353] Length = 177 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 2 VGKKIRAYREFRGFSQIQLAELSGINVGTIRKYELGIRNPKPEQLEKIAAALGLNVSIFL 61 Query: 75 DVSPTVCSDISS 86 D + D+ S Sbjct: 62 DFNIETVGDVLS 73 >gi|42520148|ref|NP_966063.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409885|gb|AAS13997.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 308 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 10/132 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG + RL I+E L Sbjct: 5 VEKSLDCKVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRGISIKRLYAIAEAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I+ S +EE +++ + R + +I+D ++R+ L + + Sbjct: 65 SVSITNLIPASKEKIG-FKNEEGEILNLV---------REYKKINDHELRRMFCLLTKFV 114 Query: 127 VSSEKKYRTIEE 138 SEK R E+ Sbjct: 115 QVSEKSSRKSEK 126 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK+I+ R++ +Q+ LGE + T +V YE+G V +L ++E L I+ Sbjct: 166 IGKKIKEWRLVREYTQKDLGEKMSTTRHEVSNYEQGRTAVPLDKLYEMAEALSINIT 222 >gi|237718063|ref|ZP_04548544.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|293370030|ref|ZP_06616597.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|299147754|ref|ZP_07040817.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|229452704|gb|EEO58495.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292634948|gb|EFF53470.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|298513937|gb|EFI37823.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 138 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 12/131 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL--ESPIS 71 +VG+ ++ R+ LGM QE L LG++ Q++ K EK + + L I+EVL + + Sbjct: 13 HVGRNLQRIRVYLGMKQEALASDLGVSQQEISKIEKQ-DEIEDGLLTKIAEVLGISTDVI 71 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FDV +C+ NN D +P + + + QI+ + +K++EL ++ SE Sbjct: 72 KDFDVEKAICNI-----NNYKDATISPGAIATVYAHNQQINPI---EKVVELYERLLKSE 123 Query: 131 KKYRTIEEECM 141 ++ I EC+ Sbjct: 124 QEKIEILRECI 134 >gi|229553274|ref|ZP_04441999.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540114|ref|YP_003174613.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229313360|gb|EEN79333.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257151790|emb|CAR90762.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 346 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 18/98 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR +R+ G++QE L + +G+T V K+EKG++ + L Sbjct: 4 MHLNQIIRTKRLAAGLTQEALAQKVGVTSPAVSKWEKGISYPDITLL------------- 50 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P + +++++ N ++DF + D L R++ ++ Sbjct: 51 -----PILARNLNTDVNTLLDFSADLDPAALRRFYTKL 83 >gi|284007380|emb|CBA72775.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 100 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ N+G+ IR +R L +S L LGI+ Q + +YE+G R+ L +S VL Sbjct: 8 IMDCINYNIGQMIRKKRQKLQISAADLSALLGISQQHLSRYERGEVRINVEWLIKVSRVL 67 Query: 67 ESPI-SFFFDVSPTVCSDISSEENNVM 92 + I S+F + D S N +M Sbjct: 68 DIAIESYFVNSRINFWEDYYSMGNCLM 94 >gi|253690483|ref|YP_003019673.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757061|gb|ACT15137.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 111 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ+KLG GI ++ +YEKGV+ Q ++E L+ P+++ Sbjct: 13 QRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIETAQQLAEALDVPLAY 72 Query: 73 FF 74 F+ Sbjct: 73 FY 74 >gi|261344094|ref|ZP_05971738.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567684|gb|EFB73219.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++G+RI+ R+ G S + LG+ GI+ QQ+ +YE+GVNR+ L + I Sbjct: 10 LSIGQRIKSLRLQNGWSGDALGKVTGISQQQISRYERGVNRIDVESLAKFANAFNVSI 67 >gi|66768392|ref|YP_243154.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66573724|gb|AAY49134.1| transcriptional regulator, HTH_3 family [Xanthomonas campestris pv. campestris str. 8004] Length = 412 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ L R GM + +L E +G+T + V YE G ++ L +SE L P +FFF Sbjct: 29 RLTLARKRRGMKKRELAEKIGLTEKSVSNYEAGSQEPESTTLSKLSEALRFPEAFFFGDD 88 Query: 78 PTVCS-DISS 86 P V + D++S Sbjct: 89 PEVPTPDVAS 98 >gi|58697513|ref|ZP_00372774.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58536024|gb|EAL59708.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 247 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL I Sbjct: 9 KIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDL 68 Query: 74 FDVSP-TVCSDISSEENNVMDFI 95 VS +C + +EE +++ + Sbjct: 69 IPVSSEKIC--LKNEEEEILNLV 89 >gi|42520477|ref|NP_966392.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630365|ref|YP_002727156.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630759|ref|YP_002727550.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|42410216|gb|AAS14326.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592346|gb|ACN95365.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592740|gb|ACN95759.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 303 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL I Sbjct: 9 KIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDL 68 Query: 74 FDVSP-TVCSDISSEENNVMDFI 95 VS +C + +EE +++ + Sbjct: 69 IPVSSEKIC--LKNEEEEILNLV 89 >gi|331091855|ref|ZP_08340687.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402754|gb|EGG82321.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] Length = 177 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 2 VGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALGLNVSVFL 61 Query: 75 DVSPTVCSDISSE----ENNV-MDFISTPD 99 D + D+ S +N+V + TPD Sbjct: 62 DFNIETVGDVLSLLFSIDNSVNLSLAETPD 91 >gi|307126198|ref|YP_003878229.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|306483260|gb|ADM90129.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|321157139|emb|CBW39125.1| Putative phage repressor protein [Streptococcus phage 23782] gi|321157188|emb|CBW39173.1| Putative phage repressor protein [Streptococcus phage 11865] Length = 244 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 12/79 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +NVG+RI+ RR L MS ++L E +G++ + +YEKG + +VG L+ I++ L Sbjct: 1 MNVGERIKQRRKALKMSADELAESVGVSRSTIFRYEKGDIEKVGPEVLKKIADKL----- 55 Query: 72 FFFDVSPTVCSDISSEENN 90 +VSP D+ E+N Sbjct: 56 ---NVSP---GDLMGWEDN 68 >gi|258616769|ref|ZP_05714539.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO] gi|293560120|ref|ZP_06676624.1| helix-turn-helix domain protein [Enterococcus faecium E1162] gi|314938184|ref|ZP_07845489.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314943772|ref|ZP_07850507.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951141|ref|ZP_07854199.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994621|ref|ZP_07859881.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995569|ref|ZP_07860663.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|291605987|gb|EFF35417.1| helix-turn-helix domain protein [Enterococcus faecium E1162] gi|313590157|gb|EFR69002.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591026|gb|EFR69871.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596620|gb|EFR75465.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597496|gb|EFR76341.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642531|gb|EFS07111.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 215 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRL 59 V KK P V+ G+RIRL R+ G+S E+LG L + V +E G N +RL Sbjct: 7 VARKKYPEAVE--TGQRIRLARIEKGLSMEQLGGKLSPPASKGAVSNWENGYNLPNNTRL 64 Query: 60 QHISEVLESPISFFFDVSPTV 80 + +S+VL+ ++ + S T+ Sbjct: 65 KQLSKVLDVSTTYLLNGSYTL 85 >gi|308181771|ref|YP_003925899.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047262|gb|ADN99805.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 188 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 40/61 (65%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+RI+ +R+ L ++Q ++ E L +T Q V ++E G + + +Q +SE+ + P ++F Sbjct: 4 SIGQRIKAKRLELKLTQNQVAEKLFVTQQTVARWENGKHTLPVKAVQDLSELFDVPTAYF 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|212710089|ref|ZP_03318217.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] gi|212687296|gb|EEB46824.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] Length = 94 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 39/71 (54%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG RI+ R G++ ++ L ++ QQ +YE+G+NR+ L I++ + Sbjct: 11 PIAKIVGSRIKKLRKEYGLTGTEIAAYLNVSQQQFSRYERGINRIDIDSLVMIADFFKIS 70 Query: 70 ISFFFDVSPTV 80 I +FF+ TV Sbjct: 71 IHYFFEDISTV 81 >gi|58699142|ref|ZP_00373967.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534342|gb|EAL58516.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 312 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL I Sbjct: 18 KIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDL 77 Query: 74 FDVSP-TVCSDISSEENNVMDFI 95 VS +C + +EE +++ + Sbjct: 78 IPVSSEKIC--LKNEEEEILNLV 98 >gi|229061582|ref|ZP_04198926.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] gi|228717816|gb|EEL69466.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] Length = 118 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG+ ++ +++ PI + F Sbjct: 4 IGERIFDLRKERKLTQEKIGENIGVSKQTISKYEKGIKIPSRENIEKLADFFNVPIDYLF 63 Query: 75 DVSPT 79 S T Sbjct: 64 GKSDT 68 >gi|206900818|ref|YP_002250397.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] gi|206739921|gb|ACI18979.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] Length = 105 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 23/125 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVGKRIR R M E L E G++ + E+G+ L+ I++ P S+ Sbjct: 1 MNVGKRIRETRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAKAFNLPTSY 60 Query: 73 FFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF SE+N+ + F+ T L D R+ II+L++S+ S + Sbjct: 61 FF-----------SEDNDETIETFLRTKTSL----------DEDERRMIIQLIKSLESKK 99 Query: 131 KKYRT 135 RT Sbjct: 100 GVRRT 104 >gi|188492663|ref|ZP_02999933.1| regulatory protein [Escherichia coli 53638] gi|188487862|gb|EDU62965.1| regulatory protein [Escherichia coli 53638] gi|315615351|gb|EFU95983.1| helix-turn-helix family protein [Escherichia coli 3431] Length = 229 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 13/118 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N RI G +Q +L LG++ Q VQ + G + +L H+SE+ P S+F Sbjct: 6 NTENRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKTFPRSDKLAHLSEISGYPQSWF 65 Query: 74 F--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI---DDVKVRQKIIELVRSI 126 D SPT SS+E + + D + N ++ D VR +I++VRSI Sbjct: 66 LGEDSSPT----FSSQEKHQ----TRTDSVVFNVLDVEFSCGDGTHVRGDLIDVVRSI 115 >gi|317501737|ref|ZP_07959924.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896859|gb|EFV18943.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] Length = 177 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 2 VGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALGLNVSVFL 61 Query: 75 DVSPTVCSDISS-----EENNVMDFISTPD 99 D + D+ S +++ + TPD Sbjct: 62 DFNIETVGDVLSLLFSIDDSVNLSLAETPD 91 >gi|319637930|ref|ZP_07992696.1| XRE family Transcriptional regulator [Neisseria mucosa C102] gi|317401085|gb|EFV81740.1| XRE family Transcriptional regulator [Neisseria mucosa C102] Length = 86 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R + R ++QEKLG +G + ++ +YEKG ++ + LQ I+EVLE P +F Sbjct: 9 RRFKEARKAKNLTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLQKIAEVLEVPPAF 68 Query: 73 FF 74 FF Sbjct: 69 FF 70 >gi|212711620|ref|ZP_03319748.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] gi|212685722|gb|EEB45250.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] Length = 107 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI---- 70 VG RIR R MS ++L + LGI+ Q ++E G R+ L ISE+LE I Sbjct: 10 VGARIRTLRKDRNMSIQQLSKLLGISQQHQSRHELGEMRIHVDTLYSISEILELDIQELM 69 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 S F D C+ E++N++ Sbjct: 70 SDFIDSYSCTCTSDKKEKDNLL 91 >gi|58699659|ref|ZP_00374339.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533824|gb|EAL58143.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 226 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL I Sbjct: 18 KIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDL 77 Query: 74 FDVSP-TVCSDISSEENNVMDFI 95 VS +C + +EE +++ + Sbjct: 78 IPVSSEKIC--LKNEEEEILNLV 98 >gi|260892597|ref|YP_003238694.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864738|gb|ACX51844.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 151 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G RI+ R+ G++Q +L + L + + + KYE+G NR A L+ ++++LE F Sbjct: 8 DLGLRIKFARLRKGLTQAELAQKLNVHPETLGKYERGTNRPDAETLRKLADILEVSTDFL 67 Query: 74 F----DVSPTVCS 82 D SP S Sbjct: 68 VGRTNDPSPIPSS 80 >gi|312868437|ref|ZP_07728637.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096182|gb|EFQ54426.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 248 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/81 (23%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L +Q+ + + LG+++Q +E+GV + ++Q + ++L P FF ++ Sbjct: 5 EKLKARRKELKKTQKDIADQLGVSYQAYSAWERGVKQPSREKVQQLEQILNVPKGFFTEI 64 Query: 77 SPTVCSDISSEE--NNVMDFI 95 + S+E NN ++++ Sbjct: 65 EIVRLYNTLSDEGKNNALNYV 85 >gi|161018434|emb|CAK01992.1| transcriptional regulator (fragment) [Bartonella tribocorum CIP 105476] Length = 39 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 28/32 (87%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ 42 +D+ VGK+IRL+R +LGMSQ+ LG+ LG++FQ Sbjct: 8 IDLFVGKKIRLKRKMLGMSQKTLGDALGVSFQ 39 >gi|260844262|ref|YP_003222040.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009] gi|257759409|dbj|BAI30906.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009] Length = 229 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 13/118 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N RI G +Q +L LG++ Q VQ + G + +L H+SE+ P S+F Sbjct: 6 NTENRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKTFPRSDKLAHLSEISGYPQSWF 65 Query: 74 F--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI---DDVKVRQKIIELVRSI 126 D SPT SS+E + + D + N ++ D VR +I++VRSI Sbjct: 66 LGEDSSPT----FSSQEKHQ----TRTDSVVFNVLDVEFSCGDGTHVRGDLIDVVRSI 115 >gi|183601014|ref|ZP_02962507.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] gi|188019351|gb|EDU57391.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] Length = 91 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++VG+RI+ R+ G S E LG+ GI+ QQ+ ++E+GVNR+ L + I Sbjct: 10 LSVGQRIKSLRLQNGWSGEALGKITGISQQQISRFERGVNRIDVESLAKFANAFNVDI 67 >gi|257463340|ref|ZP_05627736.1| putative prophage repressor [Fusobacterium sp. D12] gi|317060917|ref|ZP_07925402.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] gi|313686593|gb|EFS23428.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] Length = 198 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 13/103 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ GK+++L R G+SQE+L + L +T + YE G + +L I E L S + Sbjct: 2 LDYGKKLKLLRESKGLSQEELSDKLSVTKTTIGNYENGRRALTLEKLAEILEALNSSFNE 61 Query: 73 FF--------DVSPTVCSDISSE-----ENNVMDFISTPDGLQ 102 FF D+ + S +S+ E N++D++ P L Sbjct: 62 FFSLKELCTEDIKIPIVSKVSAGTGLLVEENIVDYLPIPKELS 104 >gi|237737130|ref|ZP_04567611.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420992|gb|EEO36039.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 181 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K + V++N G +I+L+R GM+QE+LGE L ++ Q + K+E I + Sbjct: 11 KLLKGGVNMNFGDKIQLQRKKKGMTQEELGEELNVSRQTITKWE------SNQSFPEIKK 64 Query: 65 VLESPISFFFDVS--PTVCSDISSEENNVM 92 +++ +S+FFDV+ + +I EE NV+ Sbjct: 65 IIK--LSYFFDVTIDYLLKDEIEDEERNVI 92 >gi|114798188|ref|YP_761228.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114738362|gb|ABI76487.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 126 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN +D VG IR R ++ + L +G++ QQ+QKYE NR+ A L ++E L Sbjct: 14 PNDLDRIVGSNIRALRQSQNITLQALATEIGVSHQQLQKYETSANRLSAGMLPIVAEALG 73 Query: 68 SPISFFF 74 +S + Sbjct: 74 VEVSDLY 80 >gi|321157314|emb|CBW39296.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 228 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/81 (24%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LGIT+Q +E+G+ + +++ + ++L P +F +V Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSTWERGIKQPSREKIKLLEQILNVPKGYFTEV 64 Query: 77 SPTVCSDISSEE--NNVMDFI 95 + S+E NN + ++ Sbjct: 65 EIVRLYNTLSDEGKNNALSYV 85 >gi|218690034|ref|YP_002398246.1| putative transcriptional regulator [Escherichia coli ED1a] gi|218427598|emb|CAR08499.2| Putative transcriptional regulator [Escherichia coli ED1a] Length = 115 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R G+SQ+KLG GI ++ +YEKGV+ Q ++E L P+++ Sbjct: 19 KRLKEARTAAGLSQKKLGIAAGIDEFVASTRINRYEKGVHEADIHTAQKLAETLNVPLAY 78 Query: 73 FF 74 F+ Sbjct: 79 FY 80 >gi|319939025|ref|ZP_08013389.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV] gi|319812075|gb|EFW08341.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV] Length = 115 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIRL R+ GM+QE+L E + V K E V + L+ + + LE I FF Sbjct: 16 IGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEVDIETFF 75 Query: 75 DVSP 78 D+ P Sbjct: 76 DMVP 79 >gi|296533524|ref|ZP_06896097.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296266156|gb|EFH12208.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 208 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+ +RL R LG+S ++LG G++ + + E+G+ L+ +S L+ PIS Sbjct: 25 DRRLGECVRLLRQRLGLSIQELGRRTGLSIGMISQLERGLATPSVRTLRLLSLALQVPIS 84 Query: 72 FFFDVSPTVCS 82 FFF+ P S Sbjct: 85 FFFEERPEGAS 95 >gi|268590899|ref|ZP_06125120.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313692|gb|EFE54145.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 102 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG RI+ R G++ ++ L ++ QQ +YE+G+NR+ L I++ L+ Sbjct: 6 PIAKIVGSRIKKLRREYGLTGTEVAMALNVSQQQFSRYERGINRIDIDSLVMIADFLKVS 65 Query: 70 ISFFF-DVSPTVCSDISSEENNVM 92 + +F D+ + +SE N+++ Sbjct: 66 VHYFLEDIDLEQSNSWTSEYNSLL 89 >gi|199598451|ref|ZP_03211869.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258508930|ref|YP_003171681.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199590635|gb|EDY98723.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257148857|emb|CAR87830.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259650223|dbj|BAI42385.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 343 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 18/98 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR +R+ G++QE L + +G+T V K+EKG++ + L Sbjct: 1 MHLNQIIRNKRLAAGLTQEALAQKVGVTAPAVSKWEKGISYPDITLL------------- 47 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P + +++++ N ++DF + D L R++ ++ Sbjct: 48 -----PILARNLNTDVNTLLDFSADLDPAALRRFYTKL 80 >gi|212711629|ref|ZP_03319757.1| hypothetical protein PROVALCAL_02704 [Providencia alcalifaciens DSM 30120] gi|212685731|gb|EEB45259.1| hypothetical protein PROVALCAL_02704 [Providencia alcalifaciens DSM 30120] Length = 75 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 37/64 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I R + G++ +KL + +G++ QQ +YE+GVNR+ RL + + ++ Sbjct: 11 IGSKIIYYRKMNGVTLQKLADTIGVSKQQQSRYERGVNRINLDRLAQYANYFDIDLNRLL 70 Query: 75 DVSP 78 D++ Sbjct: 71 DIND 74 >gi|325679534|ref|ZP_08159114.1| peptidase S24-like protein [Ruminococcus albus 8] gi|324108821|gb|EGC03057.1| peptidase S24-like protein [Ruminococcus albus 8] Length = 228 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +GKRI+ RR LGM+QE LG LG +Q+YE G +V +L I + + Sbjct: 4 NVEIGKRIKKRREELGMTQEALGSPLGFNKSTIQRYEAG--KVAKIKLPIIEAMAQR--- 58 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL 101 +VSP ++ + +++ ++ PD L Sbjct: 59 --LNVSPEW---LALKSDDMGEYHGAPDSL 83 >gi|260589352|ref|ZP_05855265.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260540433|gb|EEX21002.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 203 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 9/104 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N+K+ N +G RIR R G++Q +L LG + + +QKYE G V + L Sbjct: 1 MMSNEKLHNN---QIGLRIRTARKEKGINQTELANLLGKSLRTIQKYESGEIEVSIAMLN 57 Query: 61 HISEVLESPISFF--FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 I++VL+ ++ +D ++S ++M+F+ D ++ Sbjct: 58 EIAKVLDCESTYLIGYDAERKPLENLS----DIMNFLFQLDKIK 97 >gi|297242658|ref|ZP_06926596.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] gi|296888869|gb|EFH27603.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] Length = 214 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G++IR R+ G++QE+L E L ++ V K+E L+ I+ L + + Sbjct: 5 ISLGEKIRKARLEAGLTQEELSELLMVSRAAVAKWETNRGLPDIENLKFIASALSVSVDY 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 D ENN +DF T + LN+Y Sbjct: 65 LLD------------ENNSVDFSITKKPINLNKY 86 >gi|15892419|ref|NP_360133.1| hypothetical protein RC0496 [Rickettsia conorii str. Malish 7] gi|15619571|gb|AAL03034.1| unknown [Rickettsia conorii str. Malish 7] Length = 161 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 5/96 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKL--GECLGITFQQVQKYEKGVNRVGASRLQH 61 N I +P D +R++ RR+ +G K I+ QV+KYE+G++ + SRL Sbjct: 2 NYSIKHP-DKLASERLKERRLAVGRYYPKRIRASFFDISALQVKKYEEGLSNIPISRLYV 60 Query: 62 ISEVLESPISFFFDVS--PTVCSDISSEENNVMDFI 95 ++VL +P+ +FF+ S + +D + NN ++++ Sbjct: 61 FAKVLNTPLKYFFNSSEEEKLKADNENTPNNKIEYL 96 >gi|254499432|ref|ZP_05112093.1| transcriptional regulator [Legionella drancourtii LLAP12] gi|254351331|gb|EET10205.1| transcriptional regulator [Legionella drancourtii LLAP12] Length = 83 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 +D V KR++ R+ +G+SQ+KLG G+ ++ YE G + S L+ I+EVL Sbjct: 1 MDSPVPKRLKEARLAMGISQKKLGIAAGMDEFSASARMNHYEIGRHTPDYSTLKRIAEVL 60 Query: 67 ESPISFFF 74 P +FF+ Sbjct: 61 SVPTAFFY 68 >gi|139438180|ref|ZP_01771733.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] gi|133776377|gb|EBA40197.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] Length = 137 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R + GM+Q +L E +G+T V+ YE G+ V L+ I+ L ++ Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIAAALGVSVNA 60 Query: 73 FFDVSPTVCSDISS 86 D D+ S Sbjct: 61 LKDYGVETAGDLMS 74 >gi|322388880|ref|ZP_08062472.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140263|gb|EFX35776.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 228 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 36/57 (63%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ E LGI+FQ +E+GV +++ + E+L+ P +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGVKEPSKEKVKQLEEILKVPKGYF 61 >gi|317057326|ref|YP_004105793.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449595|gb|ADU23159.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 117 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR RR+ LG+SQE+L E GIT V E+ ++ + IS VLE + + Sbjct: 13 VGERIRSRRVKLGLSQEQLAELCGITPSYVGHIERASRQLSLNTAISISTVLEISLDYLL 72 >gi|217967072|ref|YP_002352578.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336171|gb|ACK41964.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 105 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 23/116 (19%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVGKRIR R M E L E G++ + E+G+ L+ I++ L P S+ Sbjct: 1 MNVGKRIREIRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAQALNLPTSY 60 Query: 73 FFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 FF SE+N+ + F+ T L D R+ II+L++S+ Sbjct: 61 FF-----------SEDNDETIETFLRTKTSL----------DEDERRMIIQLIKSL 95 >gi|296268292|ref|YP_003650924.1| helix-turn-helix domain-containing protein [Thermobispora bispora DSM 43833] gi|296091079|gb|ADG87031.1| helix-turn-helix domain protein [Thermobispora bispora DSM 43833] Length = 370 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 37/68 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R+ G+SQ +L + + + + K E G R+ A L +++ L+ PI F Sbjct: 15 IGERVRQARLAKGLSQLQLAQKVDLDRTMITKIEAGSRRLDALELARLAQALDVPIGHFL 74 Query: 75 DVSPTVCS 82 +P V S Sbjct: 75 HPAPEVLS 82 >gi|304403726|ref|ZP_07385388.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346704|gb|EFM12536.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 116 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G++Q++L E + + E+G V L I++ L+ +S FF Sbjct: 8 VGARIREIRKSKGLTQDQLAEISQFHYSYIGGVERGERNVSLENLAKIADALQVKLSLFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 D S + SE + ++ +S D Sbjct: 68 DYEEPKSSAVDSELDEIIYLLSKRD 92 >gi|228969787|ref|ZP_04130551.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228789939|gb|EEM37757.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 184 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I+ R G++ ++L E IT + + EKG+ L+ IS L+ PI Sbjct: 3 NINVGQKIKAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALKIPIF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF DI++EE Sbjct: 63 NFF------LEDINTEE 73 >gi|238797081|ref|ZP_04640584.1| hypothetical protein ymoll0001_2450 [Yersinia mollaretii ATCC 43969] gi|238719126|gb|EEQ10939.1| hypothetical protein ymoll0001_2450 [Yersinia mollaretii ATCC 43969] Length = 109 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R++ G+SQ+ LG GI ++ +YEKGV+ +H++E L P+++ Sbjct: 13 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANLVTAKHLAEALNIPLAY 72 Query: 73 FF 74 F+ Sbjct: 73 FY 74 >gi|197284203|ref|YP_002150075.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194681690|emb|CAR40796.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 94 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR +R +G++ E L + L ++ QQV +YE +++ +L IS+VL+ I + Sbjct: 21 LGKEIRSKRKAIGLTGEDLAKKLNVSQQQVSRYETAESKISFEKLLLISDVLDLNIQYLL 80 Query: 75 DV 76 V Sbjct: 81 KV 82 >gi|332653067|ref|ZP_08418812.1| transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518213|gb|EGJ47816.1| transcriptional regulator [Ruminococcaceae bacterium D16] Length = 285 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 5/100 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G+ I+ R LG+SQEKL E +G++ Q V K+E G +L ++ VLE + Sbjct: 1 MGMTIGEIIQRERTRLGLSQEKLAEQVGVSRQAVSKWELGDAVPDTDKLVPLARVLEISV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D P + E P L L+ Y+I + Sbjct: 61 DTLLDHHPQETEETPKEIEE-----KKPGWLALHWYWIGV 95 >gi|328479204|gb|EGF48603.1| XRE family transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 298 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 18/98 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR +R+ G++QE L + +G+T V K+EKG++ + L Sbjct: 4 MHLNQIIRNKRLAAGLTQEALAQKVGVTAPAVSKWEKGISYPDITLL------------- 50 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P + +++++ N ++DF + D L R++ ++ Sbjct: 51 -----PILARNLNTDVNTLLDFSADLDPAALRRFYTKL 83 >gi|253579257|ref|ZP_04856527.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849355|gb|EES77315.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 177 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 2 VGKKIRAFREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALGLNVSVFL 61 Query: 75 DVSPTVCSDISS 86 D + D+ S Sbjct: 62 DFNIETVGDVLS 73 >gi|315222885|ref|ZP_07864765.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188024|gb|EFU21759.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 116 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIRL R+ GM+QE+L E + V K E V + L+ + + LE I FF Sbjct: 16 IGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEVDIETFF 75 Query: 75 DVSPT 79 D++ T Sbjct: 76 DMAVT 80 >gi|327404285|ref|YP_004345123.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319793|gb|AEA44285.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 121 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +IR R + G+SQ+ L LGI+ Q QK E GV ++ R I+ L + F Sbjct: 8 LNLGIKIRFFRDMKGLSQQALAMQLGISQQAYQKIESGVTKLDVERANVIANELGVQLDF 67 Query: 73 FFDVSPT 79 SP Sbjct: 68 LISFSPA 74 >gi|167751085|ref|ZP_02423212.1| hypothetical protein EUBSIR_02070 [Eubacterium siraeum DSM 15702] gi|167656003|gb|EDS00133.1| hypothetical protein EUBSIR_02070 [Eubacterium siraeum DSM 15702] Length = 384 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 GKR++ R + GMS +L E L + Q V YE G ++ ++Q +S++L PI FF Sbjct: 9 GKRLKTARTLKGMSISELAEALDLQRQTVSMYESGKISNPDFPKVQRMSQLLNFPIDFFL 68 >gi|197286562|ref|YP_002152434.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227357636|ref|ZP_03841989.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194684049|emb|CAR45374.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227162346|gb|EEI47350.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 105 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+RIR R L S + + LGI+ QQ+ +YE+G NR+ + I+E + Sbjct: 7 TINFRIGQRIRHLRKNLKYSGKLFAKELGISQQQLSRYERGTNRISIEFVYLITEKFDVH 66 Query: 70 ISFFF 74 IS+F Sbjct: 67 ISYFL 71 >gi|296491938|ref|YP_003662405.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] gi|289176825|emb|CBJ92994.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] Length = 136 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 14/134 (10%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRL 59 K I + +N + I R+ G+SQ +LGE LGIT Q + KYE+GV + Sbjct: 8 KTIQKNIYMNANRLIEARKF-RGLSQRELGEALGITDSETAGQHISKYERGVRLPPYKTV 66 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQ 117 + I+++L+ P +F+ D+S+EE V F + R FI I+ + + Sbjct: 67 REIAKILDMPPCYFY----IDDDDLSAEE--VQIFYEKCLSHKSERRFISDLIEKNQEYE 120 Query: 118 KIIELVRSIVSSEK 131 K+I ++ V+S K Sbjct: 121 KVINSIKKTVNSVK 134 >gi|260463673|ref|ZP_05811871.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|319785160|ref|YP_004144636.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259030527|gb|EEW31805.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|317171048|gb|ADV14586.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 124 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP + +GKR++ R +G++QE+ L + + + E G VGA ++ ++ + E Sbjct: 11 PNPEAVRLGKRLKDAREYVGITQEEAANHLKVRRSAISEMEAGKRGVGALEMKSLAVLYE 70 Query: 68 SPISFF 73 P S+F Sbjct: 71 RPTSWF 76 >gi|206559569|ref|YP_002230330.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198035607|emb|CAR51494.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 122 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 52/108 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK I +R+ G++QEK+ E LGI + V + E+G RL ++++ + Sbjct: 11 VAVGKAIAKQRIASGLTQEKVAERLGIGLEAVSRMERGTVIPTVVRLFELADIFACDAAD 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + SD +S N ++ +ST D L F ++ R++ + Sbjct: 71 LLTEASNRSSDQASHLNRLLSRLSTSDRAMLLEVFERLSTRLTRRETV 118 >gi|291288131|ref|YP_003504947.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885291|gb|ADD68991.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 141 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R LG+SQ +LG+ L + Q + YEKG + + AS+L IS I + Sbjct: 23 MNIGIKIKELRAELGISQNELGQLLNVKQQVISYYEKG-DDIDASKLATISSEYNIDIRY 81 Query: 73 FFDVSP 78 FF P Sbjct: 82 FFSDKP 87 >gi|300718505|ref|YP_003743308.1| XRE family transcriptional regulator [Erwinia billingiae Eb661] gi|299064341|emb|CAX61461.1| XRE family transcriptional regulator [Erwinia billingiae Eb661] Length = 95 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ G SQ+ LG GI ++ +YEKG++ +Q ++E LE P+++ Sbjct: 13 KRLKQARLAKGFSQKSLGIAAGIDEFVASTRINRYEKGIHEADLDTVQRLAEALEVPVAY 72 Query: 73 FF 74 F Sbjct: 73 LF 74 >gi|160943854|ref|ZP_02091085.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii M21/2] gi|158445028|gb|EDP22031.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii M21/2] gi|295103055|emb|CBL00599.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii SL3/3] Length = 206 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLE-SPIS 71 ++ R+RLRR LG+SQE+L +G + + K EKG+N + S+++ +++ LE +P + Sbjct: 3 DLSTRVRLRREQLGLSQEELARRMGYRSRSSITKLEKGINDLPQSKVEELAQALETTPAA 62 Query: 72 FFFDVSPTVC 81 +P C Sbjct: 63 LLGLDAPCAC 72 >gi|268590938|ref|ZP_06125159.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313738|gb|EFE54191.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 78 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-ISFF 73 VG+ IR RR LG+S +L +G++ QQ+ +YE+G + L ++ L++ I FF Sbjct: 8 VGREIRKRRKHLGLSGIELANLVGVSQQQISRYERGECNINIENLHTLANALDTEMICFF 67 Query: 74 FD 75 D Sbjct: 68 ID 69 >gi|291525583|emb|CBK91170.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528262|emb|CBK93848.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 167 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G +I+ R + M+Q++L + GI ++KYE G +LQ I+E L ++ F Sbjct: 6 SIGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGISVTVF 65 Query: 74 FDVSPTVCSDISS 86 D SD+ S Sbjct: 66 LDYDINTVSDVLS 78 >gi|321272295|gb|ADW80180.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 306 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG+RI+ R+I G +Q+ L +GIT Q + +YE+G + V L I++VL Sbjct: 158 PVPYKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSIS 217 Query: 70 ISFFFDVSP 78 I D+ P Sbjct: 218 I---IDLLP 223 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG ++ +L I+E L Sbjct: 5 MEKSLDYEVGQKVKNWRLERGYTQKDLAEKVGVKYWAILQYEKGNRKIPIKKLYAIAEAL 64 Query: 67 ESPISFFFDVSPTVCSD 83 +V VC + Sbjct: 65 S------VNVKGLVCGE 75 >gi|321272347|gb|ADW80228.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 306 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG+RI+ R+I G +Q+ L +GIT Q + +YE+G + V L I++VL Sbjct: 158 PVPYKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSIS 217 Query: 70 ISFFFDVSP 78 I D+ P Sbjct: 218 I---IDLLP 223 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + YE G ++ +L I+E L Sbjct: 5 MEKSLDYEVGQKVKNWRLERGYTQKDLAEKVGVKYWAILXYEXGNRKIPIKKLYAIAEAL 64 Query: 67 ESPISFFFDVSPTVCSD 83 +V VC + Sbjct: 65 S------VNVKGLVCGE 75 >gi|291456538|ref|ZP_06595928.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] gi|291381815|gb|EFE89333.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] Length = 137 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 39/74 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R + GM+Q +L E +G+T V+ YE G+ V L+ I++ L ++ Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIADTLGVSVNA 60 Query: 73 FFDVSPTVCSDISS 86 D D+ S Sbjct: 61 LKDYGVENAGDLMS 74 >gi|227357914|ref|ZP_03842260.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227161887|gb|EEI46911.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 94 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR +R +G++ E L + L ++ QQV +YE +++ +L IS+VL+ I + Sbjct: 21 LGKEIRSKRKAIGLTGEDLAKKLNVSQQQVSRYETAESKISFEKLLLISDVLDLNIQYLL 80 Query: 75 DV 76 V Sbjct: 81 KV 82 >gi|295107669|emb|CBL05212.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R GM+Q +L E +G+T V+ YE G+ V L+ I++ L ++ Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRTVKPELLESIADTLGVSVNA 60 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPDGLQLN 104 D D+ S E++ + S GL LN Sbjct: 61 LKDYGVETAGDLMSLLVRLEDSFGIAPASDGSGLTLN 97 >gi|188585017|ref|YP_001916562.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349704|gb|ACB83974.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 120 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFF 73 +G RIR R L +S++KLG +G+T + + E+G + L IS+VL+ I SF Sbjct: 10 IGDRIREERERLDLSRKKLGRLIGVTEHHIGQLERGERNTSLTTLAKISQVLKVSIDSFV 69 Query: 74 FDV 76 FD Sbjct: 70 FDT 72 >gi|323357780|ref|YP_004224176.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274151|dbj|BAJ74296.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 211 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG RIR R G+S L LGI+ V + E+GV + SRL I++ L P+ Sbjct: 26 SVGARIRDLRQARGISARALAATLGISPSAVSQIERGVMQPSVSRLIAITDALGVPLVAA 85 Query: 74 FD 75 FD Sbjct: 86 FD 87 >gi|325263078|ref|ZP_08129813.1| DNA-binding protein [Clostridium sp. D5] gi|324031471|gb|EGB92751.1| DNA-binding protein [Clostridium sp. D5] Length = 207 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 21/131 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I++ R + G++Q++L E +GI Q + K E+G+N LQ ++E+L Sbjct: 11 LGHNIQVIRKLKGLTQQELSEQIGINLQSLSKIERGINYPTFDTLQKLAEIL-------- 62 Query: 75 DVSPT--VCSDISSE---ENNVMDFISTPDGLQLNRYFIQID-----DVKVR---QKIIE 121 DV+P + ++ S E N++ F+ + L + Q D D + QK+ E Sbjct: 63 DVTPNELLAGELKSTSHIEANILKFLEHEERLNVELAHGQYDNPLDADEWIEYELQKLRE 122 Query: 122 LVRSIVSSEKK 132 + + S+K+ Sbjct: 123 YITDYIHSDKR 133 >gi|295107448|emb|CBL04991.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R GM+Q +L E +G+T V+ YE G+ V L+ IS L ++ Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESISAALGVSVNA 60 Query: 73 FFDVSPTVCSDISS 86 D D+ S Sbjct: 61 LKDYGVETAGDLMS 74 >gi|190570724|ref|YP_001975082.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019732|ref|ZP_03335537.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356996|emb|CAQ54385.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994773|gb|EEB55416.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 306 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 1 MVGNKKIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K N +D V G+ +R RR+ G +Q+ L + + T+Q + +YEKG R+ +L Sbjct: 1 MKKENKCSNFLDYKVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 ++E L S + V ++ EE V++ + Sbjct: 61 YELAEAL-STTARDLACVQGVSNEKRYEEEEVLNLV 95 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI P VG+RI+ R+ G +QE L +GI Q++ +YE+G + V L I++ Sbjct: 159 KKISIPY--KVGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRSAVSLEMLDEIAK 216 Query: 65 VL 66 VL Sbjct: 217 VL 218 >gi|219871965|ref|YP_002476340.1| transcriptional regulator [Haemophilus parasuis SH0165] gi|219692169|gb|ACL33392.1| transcriptional regulator [Haemophilus parasuis SH0165] Length = 130 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +IRL R +SQE++ L ++ + K E+G RV RL+ I VL + I Sbjct: 1 MNINDKIRLFREDHQLSQEEMATKLSMSTKGYAKIERGETRVNFERLEQILGVLNADIYE 60 Query: 73 FFDVSPTVCSDISSEENNVMD----FISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIV 127 IS+ NN F+ + D +LN D+ +K++ +IE +R+ + Sbjct: 61 LLTYGENKGITISTGNNNTNASSNIFLGSDDVEKLNLMLAHKDEIIKLKDDVIESLRNEI 120 Query: 128 S 128 S Sbjct: 121 S 121 >gi|213019778|ref|ZP_03335581.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994608|gb|EEB55253.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 306 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 35/55 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+++R R+ G +Q+ L + +G T+Q + +YEKG R+ ++L ++E L + Sbjct: 16 VGQKVRSCRIAKGYTQKDLAKKIGTTYQVILQYEKGTRRISITKLYELAEALSTT 70 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI P VG+RI+ R+ G +QE L +GI Q++ +YE+G V L I++ Sbjct: 159 KKISIPY--KVGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEIAK 216 Query: 65 VL 66 VL Sbjct: 217 VL 218 >gi|218135227|ref|ZP_03464031.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] gi|217990612|gb|EEC56623.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] Length = 167 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G +I+ R + M+Q++L + GI ++KYE G +LQ I+E L ++ F Sbjct: 6 SIGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGISVTVF 65 Query: 74 FDVSPTVCSDISS 86 D SD+ S Sbjct: 66 LDYDINTISDVLS 78 >gi|197285329|ref|YP_002151201.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194682816|emb|CAR43084.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 111 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G + L R M+ +LG+ L I+ QQ+ +YE+G+N++ L HI + + IS FF Sbjct: 23 IGYELFLLRQRNSMTGAELGKLLNISQQQISRYERGINKIPIDILFHILNIFDISISDFF 82 Query: 75 D 75 + Sbjct: 83 E 83 >gi|240949459|ref|ZP_04753799.1| transcriptional regulator [Actinobacillus minor NM305] gi|240296032|gb|EER46693.1| transcriptional regulator [Actinobacillus minor NM305] Length = 130 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +IRL R +SQE++ L ++ + K E+G RV RL+ I VL + I Sbjct: 1 MNINDKIRLFREDHQLSQEEMATKLSMSTKGYAKIERGETRVNFERLEQILGVLNADIYE 60 Query: 73 FFDVSPTVCSDISSEENNVMD----FISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIV 127 IS+ NN F+ + D +LN D+ +K++ +IE +R+ + Sbjct: 61 LLTYGENKGITISTGNNNTNASSNIFLGSDDVEKLNLMLAHKDEIIKLKDDVIESLRNEI 120 Query: 128 S 128 S Sbjct: 121 S 121 >gi|315644486|ref|ZP_07897618.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315279993|gb|EFU43290.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 272 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I R G++QE L LG+TFQ V K+E G + L +S++LE + F Sbjct: 5 LAKNINRYRKERGLTQEALAHKLGVTFQAVSKWETGQTMPDVALLPELSQLLEVSMDKLF 64 Query: 75 DVSPTVCS-DISSEENNVMDF 94 S T S I EE D+ Sbjct: 65 GYSSTGKSLSIYEEEYKTPDY 85 >gi|300722701|ref|YP_003711991.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] gi|297629208|emb|CBJ89805.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] Length = 123 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQK-----YEKGVNRVGASRLQHISEVLESPIS 71 KR+ R LG+SQ +LGE LG+ + V K YE+G+N S + I+ +L+ P Sbjct: 4 KRLSESRKALGLSQRELGEKLGLYDEDVAKATISRYERGLNAPAYSTVCQIANILKVPPC 63 Query: 72 FFF 74 +F+ Sbjct: 64 YFY 66 >gi|330467327|ref|YP_004405070.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328810298|gb|AEB44470.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] Length = 363 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+++R R+ LG+SQ+ L +G+ + K E G R+ A L +S L+ + + Sbjct: 10 VGEQVRQARLSLGISQQDLATMVGLDRTMLAKVEAGSRRLDALELAKLSRALKVSMEYLI 69 Query: 75 DVSPTVCS 82 PTV S Sbjct: 70 QPPPTVLS 77 >gi|153810274|ref|ZP_01962942.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] gi|149833453|gb|EDM88534.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] Length = 124 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + ++IR R G+SQE L E GI ++KYE G+ + +L+ I++ LE + Sbjct: 26 DMEINEKIRYFRKQRGLSQELLAERTGINVNTIRKYEIGIRKPKVEQLKKIADGLEISVI 85 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL 101 F D+ +D+ + + F DGL Sbjct: 86 EFLDIEIENEADLIAMLKKISPFFKW-DGL 114 >gi|85058755|ref|YP_454457.1| hypothetical protein SG0777 [Sodalis glossinidius str. 'morsitans'] gi|84779275|dbj|BAE74052.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 108 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHIS 63 P+ +D+ +R++ R G+SQ++LG GI ++ +YEKGV+ QH++ Sbjct: 5 PSYLDV-FCRRLKQARQAKGLSQKQLGIAAGIDEFVASTRINRYEKGVHEANIQIAQHLA 63 Query: 64 EVLESPISFFF 74 VLE P+++ + Sbjct: 64 TVLEVPLAYLY 74 >gi|228953531|ref|ZP_04115575.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229079669|ref|ZP_04212202.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228703509|gb|EEL55962.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228806155|gb|EEM52730.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 184 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DINVG +IR R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 DINVGHKIRAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 63 NFF------LEDTNTEE 73 >gi|213019781|ref|ZP_03335584.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994611|gb|EEB55256.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 302 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+RI+ R+I G +Q+ L +GIT Q + +YE+G V L I++VL Sbjct: 154 PIPYKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRAAVSLEMLHEIAKVLSIS 213 Query: 70 I 70 I Sbjct: 214 I 214 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG ++ +L I+E L Sbjct: 1 MEKSLDCEVGQKVKSWRLERGYTQKDLAEKVGVKYWAILQYEKGSRKIPIKKLYAIAEAL 60 Query: 67 ESPISFFFDVSPTVCSD 83 +V VC + Sbjct: 61 S------VNVKGLVCGE 71 >gi|197286055|ref|YP_002151927.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194683542|emb|CAR44394.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 97 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 44/83 (53%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P VGK+I R + G++ +L + +GI+ QQ +YE+G+NRV RL + Sbjct: 6 PASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACFFGIS 65 Query: 70 ISFFFDVSPTVCSDISSEENNVM 92 +S F + +I ++ +N++ Sbjct: 66 LSDLFQLDDEDKVEIENKISNII 88 >gi|88858936|ref|ZP_01133577.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819162|gb|EAR28976.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 119 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R R+ +SQ+ L + L I+ Q +Q +E+G N +R+ ++E+L P+ + Sbjct: 11 KLRKARLEKDLSQQNLADHLKISVQSIQHWERGANTPKLARMNQLAEILSVPVEYLM 67 >gi|229513255|ref|ZP_04402720.1| hypothetical protein VCB_000900 [Vibrio cholerae TMA 21] gi|229513261|ref|ZP_04402726.1| hypothetical protein VCB_000906 [Vibrio cholerae TMA 21] gi|229349665|gb|EEO14620.1| hypothetical protein VCB_000900 [Vibrio cholerae TMA 21] gi|229349671|gb|EEO14626.1| hypothetical protein VCB_000906 [Vibrio cholerae TMA 21] Length = 171 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 38/56 (67%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +++++G+ ++ RR+ LG+ QE + E +G+T Q + K+EK AS++ +S++L Sbjct: 4 LNMSIGETLKNRRIELGIKQETIAEEMGVTVQTIYKWEKDTTEPKASQVSKLSKIL 59 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+RL R + M+QE L E +G+T Q + + E+G L + L + ++ FF Sbjct: 6 VGGRLRLYRQLRDMTQESLSEVIGVTKQHLGQIERGQCNPSLDFLSKAAAALNTQVANFF 65 Query: 75 ---DVSPTV--CSDISSEENNVMDF 94 PTV CS S + + F Sbjct: 66 LGNSHDPTVSGCSTCSEDAGRIQPF 90 >gi|321272298|gb|ADW80183.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] gi|321272350|gb|ADW80231.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 312 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 1 MVGNKKIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K N +D V G+ +R RR+ G +Q+ L + + T+Q + +YEKG R+ +L Sbjct: 1 MKKENKCSNFLDYKVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKL 60 Query: 60 QHISEVLESP 69 ++E L + Sbjct: 61 YELAEALSTT 70 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI P VG+RI+ R+ G +QE L +GI Q++ +YE+G V L I++ Sbjct: 162 KKISIPY--KVGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAGVSLEMLDEIAK 219 Query: 65 VLESPISFFFDVSPTVCSDISSE 87 VL I+ D+ P + +SE Sbjct: 220 VLSISIT---DLLPETTENENSE 239 >gi|228960178|ref|ZP_04121835.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799446|gb|EEM46406.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] Length = 118 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG ++ +++ PI + F Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-VRSIVSSEKK 132 SD S + +N + I D L + + ++++ + ++E+ ++ ++ EKK Sbjct: 64 G-----KSDNSIKSSNNIKEIFESDELHWDGRKLSPEEIESVKALLEVAIQRMLKQEKK 117 >gi|50121835|ref|YP_051002.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] gi|49612361|emb|CAG75811.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 370 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Query: 27 GMSQEKLGECLGITFQQVQKYEKG--VNRVGASRLQHISEVLESPISFFFD 75 G++Q L E G+T + + YEK + + + ++ IS VLE PI FF D Sbjct: 15 GLTQRALAEAAGLTSKTISNYEKAGIFDAIASDSMERISAVLEYPIEFFLD 65 >gi|42520374|ref|NP_966289.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410112|gb|AAS14223.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 312 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 1 MVGNKKIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K N +D V G+ +R RR+ G +Q+ L + + T+Q + +YEKG R+ +L Sbjct: 1 MKKENKCSNFLDYKVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKL 60 Query: 60 QHISEVLESP 69 ++E L + Sbjct: 61 YELAEALSTT 70 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI P VG+RI+ R+ G +QE L +GI Q++ +YE+G V L I++ Sbjct: 162 KKISIPY--KVGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEIAK 219 Query: 65 VL 66 VL Sbjct: 220 VL 221 >gi|332533845|ref|ZP_08409701.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] gi|332036776|gb|EGI73239.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] Length = 206 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+RI+ RR+ LG++Q L E GI Q +QK E G + L+ +++ L+ F Sbjct: 1 MSVGERIKKRRVELGLTQANLAELAGIIQQSLQKIESGSTK-NPRNLKALADALDCTPEF 59 Query: 73 F-FDVSPTVCSDIS 85 F ++ ++ S++S Sbjct: 60 LQFGIAESINSNVS 73 >gi|291540195|emb|CBL13306.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 107 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G +I+ R + M+Q++L + GI ++KYE G +LQ I+E L ++ F Sbjct: 6 SIGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGISVTVF 65 Query: 74 FDVSPTVCSDISS 86 D SD+ S Sbjct: 66 LDYDINTISDVLS 78 >gi|268590993|ref|ZP_06125214.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291313798|gb|EFE54251.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 90 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 9/81 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI +R LG + +L + LG++ QQ+ +YE+G ++ L ++ ++ +PI +F Sbjct: 14 VGQRILEKRRELGYTGFQLAQLLGVSQQQISRYERGKIKIDLFHLFKLAFLMGTPIDWFL 73 Query: 75 DVSPTVCSDISSE--ENNVMD 93 + DISS+ EN +D Sbjct: 74 E-------DISSQLSENGRLD 87 >gi|261344499|ref|ZP_05972143.1| prophage Sa05, DNA-binding protein [Providencia rustigianii DSM 4541] gi|282567408|gb|EFB72943.1| prophage Sa05, DNA-binding protein [Providencia rustigianii DSM 4541] Length = 89 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 41/83 (49%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G +I+L R G+S + + +GI+ QQ +YE+G NR+ RL+ + Sbjct: 6 PVSAIIGNKIKLLRKEKGLSLIAVAKGVGISEQQQLRYERGNNRISIDRLKQYANYFNIS 65 Query: 70 ISFFFDVSPTVCSDISSEENNVM 92 ++ FF + I E N + Sbjct: 66 LNQFFSFNENEKEKIKYEVNKTL 88 >gi|213019847|ref|ZP_03335649.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994595|gb|EEB55241.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 310 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+E L I+ Sbjct: 17 IAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVSIADLI 76 Query: 75 DVS 77 VS Sbjct: 77 PVS 79 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/79 (24%), Positives = 41/79 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 170 IGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLL 229 Query: 75 DVSPTVCSDISSEENNVMD 93 +++ + +E N+++ Sbjct: 230 ELTEDADDKVENELPNLIE 248 >gi|228966936|ref|ZP_04127974.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228792670|gb|EEM40234.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 118 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG ++ +++ PI + F Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYLF 63 Query: 75 DVS 77 S Sbjct: 64 GKS 66 >gi|327439445|dbj|BAK15810.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 133 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ SQ L + +G+T V +YE+G + A L I++VLE+ + FF Sbjct: 10 IGNKIKDYRLKKKYSQADLAKLIGVTNTSVSEYERGKVNIDADTLFQIADVLEAKVDDFF 69 Query: 75 DVSPTVCSD 83 P SD Sbjct: 70 ---PARKSD 75 >gi|238755351|ref|ZP_04616693.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473] gi|238706386|gb|EEP98761.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473] Length = 123 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 11/117 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPI 70 V KR++ R G+SQEKL E +GI ++ YE G N + I++ L+ P Sbjct: 2 VPKRLKAAREAAGLSQEKLAELVGIEGVSLNSRLSNYEVGRNTPSFDFIVRIAKALDYPE 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 S+F+ T+ D++ ++ F + LN ++ DD + + ++ + +V Sbjct: 62 SYFY----TIDDDVAEA---ILQFHRHKNNAVLNPFYDAQDDARKYKTSLDEAKKMV 111 >gi|314937137|ref|ZP_07844484.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|313655756|gb|EFS19501.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 292 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 VGKRI+ R G++QE G+ G + V +EKG++ ASRL+ I++++ Sbjct: 15 VGKRIKSIRQQKGLTQESFGKLFGASKGNVATWEKGISLPNASRLREIADLV 66 >gi|227356569|ref|ZP_03840956.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227163325|gb|EEI48252.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 113 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P VGK+I R + G++ +L + +GI+ QQ +YE+G+NRV RL + Sbjct: 22 PASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACFFGIS 81 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTP-DG 100 +S F + +I ++ +N++ + P DG Sbjct: 82 LSDLFQLDDEEKVEIENKISNMVGNKNEPFDG 113 >gi|301066917|ref|YP_003788940.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|300439324|gb|ADK19090.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 344 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 41/68 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L +G++ V K+EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTV 80 S T+ Sbjct: 61 LLTFSVTM 68 >gi|239629798|ref|ZP_04672829.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527410|gb|EEQ66411.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 344 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 41/68 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L +G++ V K+EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTV 80 S T+ Sbjct: 61 LLTFSVTM 68 >gi|116495345|ref|YP_807079.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116105495|gb|ABJ70637.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 344 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 41/68 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L +G++ V K+EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTV 80 S T+ Sbjct: 61 LLTFSVTM 68 >gi|269122513|ref|YP_003310690.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268616391|gb|ACZ10759.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 127 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPIS 71 +++GKRI+ RR LG +QE+L E +G + + K E G+N + S++ +++L++ S Sbjct: 1 MSIGKRIKKRREELGYTQEQLAEKMGYKSKSTINKIEAGINDITQSKITAFAKILKTTPS 60 Query: 72 FF 73 + Sbjct: 61 YL 62 >gi|28871153|ref|NP_793772.1| repressor protein cI [Pseudomonas syringae pv. tomato str. DC3000] gi|28854403|gb|AAO57467.1| repressor protein cI [Pseudomonas syringae pv. tomato str. DC3000] Length = 234 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 ++ L ++Q KL E GIT V +Y +G+N + A ++++LE PI F SP + Sbjct: 26 KKNALKLTQRKLAEAAGITPASVNQYLRGINPLNARFAAVLAKMLEEPIESF---SPRLA 82 Query: 82 SDISSEEN 89 ++IS N Sbjct: 83 TEISEMAN 90 >gi|158318022|ref|YP_001510530.1| helix-turn-helix domain-containing protein [Frankia sp. EAN1pec] gi|158113427|gb|ABW15624.1| helix-turn-helix domain protein [Frankia sp. EAN1pec] Length = 366 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R +LG+SQ L E G+ + K E G L I+ V +P S FF Sbjct: 13 AGERIRAARTLLGLSQGDLAEASGVGQTMISKIESGAKYPSDDLLDTIAAVTGTPRS-FF 71 Query: 75 DVSP 78 DV P Sbjct: 72 DVVP 75 >gi|147677060|ref|YP_001211275.1| hypothetical protein PTH_0725 [Pelotomaculum thermopropionicum SI] gi|146273157|dbj|BAF58906.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 355 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 36/60 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+RL R G+S +L +G++ Q + KYE+G++ + L ++E L + +FF Sbjct: 2 VGERLRLARRAAGLSLRELANRVGVSPQAISKYERGLDIPSSGVLLRLAEALGVNVEYFF 61 >gi|260427903|ref|ZP_05781882.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260422395|gb|EEX15646.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 131 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 11/88 (12%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P G RI R GM QEKL LG+ + +Q +E ++ A+RLQ ++ +L Sbjct: 9 GPDAATFGDRIAAAREAAGMGQEKLARRLGVKLKTLQGWENDLSEPRANRLQMLAGLLNV 68 Query: 69 PISFFF-----------DVSPTVCSDIS 85 + + D P + +D++ Sbjct: 69 SMGWLLTGEGEGLSGPGDTEPALPADVN 96 >gi|153954446|ref|YP_001395211.1| transcription regulator [Clostridium kluyveri DSM 555] gi|153954541|ref|YP_001395306.1| transcription regulator [Clostridium kluyveri DSM 555] gi|146347327|gb|EDK33863.1| Predicted transcriptional regulator with an addtional conserved domain [Clostridium kluyveri DSM 555] gi|146347399|gb|EDK33935.1| Predicted transcriptional regulator with an addtional conserved domain [Clostridium kluyveri DSM 555] Length = 381 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N DI V RI+ R G+S +L E + +T Q + +YEKG+ L+ +S L Sbjct: 2 VKNNFDI-VPARIKEARESRGLSMSELSELIEVTSQAISQYEKGIMNPSVFVLKKMSNAL 60 Query: 67 ESPISFFF 74 PI FF+ Sbjct: 61 NFPIQFFY 68 >gi|284036062|ref|YP_003385992.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283815355|gb|ADB37193.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 141 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFF 74 ++IRL+R+ G+SQE + + L ++ E+G + SRL I+ VL SP++ Sbjct: 10 AEKIRLQRLQRGLSQENMADLLNLSTTAYGDIERGKTDLTLSRLSQIANVLAISPLALLT 69 Query: 75 D------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK---IIELVRS 125 D V +++S E + + L+L++ ++ D K + +E++RS Sbjct: 70 DEAIPAQVVEEKSEEVASHELETLRLVVEKQQLELDKLRLEADYWKRKYDDRIAMEVLRS 129 Query: 126 IVSSEKKYR 134 + +K+ R Sbjct: 130 MGVEQKRER 138 >gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFF 73 +GKR++++R+ +SQ +L + LG+T + E G + L + ++LE PI SFF Sbjct: 13 IGKRVKMQRISAKVSQTELAKELGVTQTHLSNIENGRAGLTIPNLIKLHQILECPISSFF 72 Query: 74 FDVSPTVCSDISSE--ENNVMDF 94 D+ +D SS+ NVM+ Sbjct: 73 VDIEWEKEADNSSDITLENVMEL 95 >gi|224542166|ref|ZP_03682705.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] gi|224524934|gb|EEF94039.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] Length = 121 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 6/78 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K +++ R G++QE + E L + Q + K+EKG++ A L ++E+L+ Sbjct: 2 LSKNLKIFRKRKGLTQENVAEALNVVRQTISKWEKGISVPDADMLIKLAEILD------V 55 Query: 75 DVSPTVCSDISSEENNVM 92 VS + SD++ E+N M Sbjct: 56 SVSKLIGSDVADEKNEDM 73 >gi|167751674|ref|ZP_02423801.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] gi|167655482|gb|EDR99611.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] Length = 271 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +N+G I +R LG++Q+ L E L ++FQ + K+E G + L I+ +L++ I Sbjct: 1 MNIGNVISEKRKALGLTQQALAEKLHVSFQAISKWENGTSCPDIELLPQIAAILKTTI 58 >gi|219855036|ref|YP_002472158.1| hypothetical protein CKR_1693 [Clostridium kluyveri NBRC 12016] gi|219568760|dbj|BAH06744.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 384 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N DI V RI+ R G+S +L E + +T Q + +YEKG+ L+ +S L Sbjct: 5 VKNNFDI-VPARIKEARESRGLSMSELSELIEVTSQAISQYEKGIMNPSVFVLKKMSNAL 63 Query: 67 ESPISFFF 74 PI FF+ Sbjct: 64 NFPIQFFY 71 >gi|288353334|ref|YP_003422632.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] gi|285026735|gb|ADC33829.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] Length = 401 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 36/59 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R + +SQE+LG+ +G++ Q + ++E+G A L I VL+ PI FF Sbjct: 24 IPERLKDARKFMRLSQEELGKEIGVSRQAISQFERGDRNPDARTLVGIQSVLKQPIEFF 82 >gi|227544810|ref|ZP_03974859.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908944|ref|ZP_07126407.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227185211|gb|EEI65282.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894351|gb|EFK87709.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 108 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 N+G IR RR LG++QE+L G++ + + E G N V A L I+EVL++ + Sbjct: 3 NLGANIRARRHELGITQEQLSNNTGLSINYISRLEVGTANNVSAKTLLKIAEVLKTSMDK 62 Query: 73 FFDVSPTVCS 82 + S + Sbjct: 63 LVNGSSDTAN 72 >gi|238060409|ref|ZP_04605118.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882220|gb|EEP71048.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 409 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPI 70 ++ VG+RI R MSQ+ L + LG + V K E+GV R+ S LQ I+ VL + Sbjct: 3 ELPVGRRIAYWRTRRRMSQQALADTLGKSKSWVDKVERGVRRLDKLSNLQEIAGVLRIDV 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 F P ++E + D Sbjct: 63 QFLIGTEPASSGSGAAEGGPLSD 85 >gi|212710521|ref|ZP_03318649.1| hypothetical protein PROVALCAL_01584 [Providencia alcalifaciens DSM 30120] gi|212686941|gb|EEB46469.1| hypothetical protein PROVALCAL_01584 [Providencia alcalifaciens DSM 30120] Length = 97 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 1 MVGNKKIPNP-VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ N++ N V +G ++ RR ++G++ +L L I+ QQ+ +YE+GVN + L Sbjct: 1 MITNQRFDNHEVSTYIGSFLKRRRKVVGLTGAELASRLSISQQQISRYERGVNAITIQNL 60 Query: 60 QHISEVLE 67 I LE Sbjct: 61 LGILHALE 68 >gi|268591987|ref|ZP_06126208.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gi|291312378|gb|EFE52831.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 87 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R RR+ +G + LG+ G++ QQ+ +YE+G RL + VL+ + +F Sbjct: 13 IGLQVRKRRLQMGWTAHTLGKKSGLSQQQISRYERGTQNFTIHRLCIFANVLQCDLDYFL 72 Query: 75 D 75 + Sbjct: 73 E 73 >gi|253690481|ref|YP_003019671.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757059|gb|ACT15135.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 105 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 10/72 (13%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGV---NRVGASRLQHISEVLESP 69 +R++ R++ G+SQ+ LG GI ++ +YEKGV N V ASRL +E L+ P Sbjct: 13 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANLVTASRL---AEALDVP 69 Query: 70 ISFFFDVSPTVC 81 +++F+ + Sbjct: 70 LAYFYAADDNLA 81 >gi|322375869|ref|ZP_08050380.1| putative toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] gi|321279137|gb|EFX56179.1| putative toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] Length = 111 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIRL R+ ++Q++L E + + K E + LQ I + L++ I FF Sbjct: 10 LGKRIRLLRLQKNLTQQQLEELADLPLKYTYKLENLEPNIKIKTLQKIMDALDTDIETFF 69 Query: 75 DVSPT 79 D+S T Sbjct: 70 DISVT 74 >gi|262164056|ref|ZP_06031795.1| protein of unknown function DUF955 [Vibrio mimicus VM223] gi|262027584|gb|EEY46250.1| protein of unknown function DUF955 [Vibrio mimicus VM223] Length = 375 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 7/72 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+R+RL R++ G + ++LG+ + +T Q + +YE + RV A +++ ++E L+ SFF Sbjct: 7 GERLRLARLLKGYTLQELGDAVSVTRQSIHQYESDI-RVPADDIKNALAESLQVETSFFC 65 Query: 75 -----DVSPTVC 81 DV P C Sbjct: 66 MPLSGDVKPEQC 77 >gi|269120018|ref|YP_003308195.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268613896|gb|ACZ08264.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 108 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 39/74 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R ++Q++L + +G V KYE G V + L ISE+L++P+S FF Sbjct: 5 IGSNIKNYRKTNKLTQQELADKIGKHKITVAKYESGKISVPMAVLHEISEILDTPMSDFF 64 Query: 75 DVSPTVCSDISSEE 88 +P + +E Sbjct: 65 KENPISIDNFEPKE 78 >gi|212711628|ref|ZP_03319756.1| hypothetical protein PROVALCAL_02703 [Providencia alcalifaciens DSM 30120] gi|212685730|gb|EEB45258.1| hypothetical protein PROVALCAL_02703 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +GK+I R + GMS + + + ++ QQ +YE+GVNR+ RL + + Sbjct: 7 PISRIIGKKITYYRKMNGMSLCDISKMIHVSEQQQSRYERGVNRINLDRLHQYARIFSID 66 Query: 70 ISFFF 74 + FF Sbjct: 67 LIDFF 71 >gi|291521206|emb|CBK79499.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 128 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 10/91 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIR RR+ L M Q +L E + I+ + E+G+ R G I +VL Sbjct: 9 VEMGKRIRTRRLSLKMKQMELAEEVDISNNHISSIERGIERPGLDSFIRICDVL------ 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 DV+P S + NNV I+ D L+L Sbjct: 63 --DVTPDYLLLGSMKSNNVPKNIT--DNLKL 89 >gi|99035917|ref|ZP_01314965.1| hypothetical protein Wendoof_01000195 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 306 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG R+ RL I+ L Sbjct: 5 VEKILDYEVGEKVKSWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAIAGAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I+ S +EE +++ + R + +I+D ++R+ Sbjct: 65 SVSITDLITASKEKIG-FKNEEGEILNLV---------REYKKINDQELRR 105 >gi|268591081|ref|ZP_06125302.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313888|gb|EFE54341.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 52 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ E+LG +G++ QQ+ +YE GVN + L +SE+ + PI F Sbjct: 3 LTAEELGRYIGVSQQQISRYESGVNHINIDFLSQLSELFKVPIQVFL 49 >gi|317046283|ref|YP_004113931.1| hypothetical protein Pat9b_0045 [Pantoea sp. At-9b] gi|316947900|gb|ADU67375.1| protein of unknown function DUF955 [Pantoea sp. At-9b] Length = 361 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I LRR +LG+SQ++L + + I+ + K E+G+ ++++I+ L P+ FF Sbjct: 15 IELRRKMLGLSQKELAQIIAISQGTLSKIEQGLKPATDDQIENIANALNCPVEFFM 70 >gi|255598541|ref|XP_002537032.1| conserved hypothetical protein [Ricinus communis] gi|223517747|gb|EEF25351.1| conserved hypothetical protein [Ricinus communis] Length = 318 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 8 PNPVD---INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P D + + +R+R R +G+SQE + LGI+ V E G +V A L +S+ Sbjct: 3 PDPTDEQRLLLAQRLREAREYVGLSQEDVATALGISRPAVTNIEAGTRKVEAVELDKLSQ 62 Query: 65 VLESPISFFF 74 + + FF Sbjct: 63 LYGKTVQFFL 72 >gi|261823599|ref|YP_003261705.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607612|gb|ACX90098.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 108 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R++ G+SQ+ LG GI ++ +YEKGV Q ++E L+ P+++ Sbjct: 13 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVYEASIETAQQLAEALDVPLAY 72 Query: 73 FF 74 F+ Sbjct: 73 FY 74 >gi|82702660|ref|YP_412226.1| XRE family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82410725|gb|ABB74834.1| transcriptional regulator, XRE family [Nitrosospira multiformis ATCC 25196] Length = 189 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR R L ++Q +L E +G++ Q VQ++E G + RL I+EVL+ P + Sbjct: 6 MDIARIIREGREKLKLNQSELAELVGVSPQAVQQWESGATQPRGKRLNKIAEVLKLPPAM 65 Query: 73 FF 74 Sbjct: 66 MH 67 >gi|222530426|ref|YP_002574308.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457273|gb|ACM61535.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 122 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 11/107 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++++ R G++QE++ + LG+ Q+ YE G + LQ ++++ +++F Sbjct: 10 IGQKLQEARKKAGLTQEQVADYLGVNKVQLSYYENGAREISIETLQQLADLYGYTLNYFL 69 Query: 75 D----VSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D P V E E ++ I+ NR+ I ++ +K+ Sbjct: 70 DDEKSTDPAVSFSFRGEELEKEDLEVIALA-----NRFLINLEQMKM 111 >gi|325453295|gb|ADZ13598.1| phage repressor protein [Cronobacter phage ENT39118] Length = 232 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 9/70 (12%) Query: 20 RLRRMI------LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RLRR+ LG+SQE L E LGI+ V ++ G N + R +EVL+ PI F Sbjct: 16 RLRRIYNEKKKDLGLSQEVLAERLGISQSAVAQFLAGKNALNMKRASEFAEVLQVPIDAF 75 Query: 74 FDVSPTVCSD 83 SP++ + Sbjct: 76 ---SPSLADE 82 >gi|78187740|ref|YP_375783.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167642|gb|ABB24740.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 390 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G R+R RM LG SQEKL EC G+ + E+G + + + I+ L +S Sbjct: 13 LGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALHVTLS 69 >gi|160896156|ref|YP_001561738.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361740|gb|ABX33353.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 104 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 25/41 (60%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 ++G+RIR RR LGM+Q +L E GIT V + E G R Sbjct: 3 HIGERIRARRAELGMTQGRLAEAAGITASAVSQIESGAIRT 43 >gi|218459941|ref|ZP_03500032.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 90 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 5/77 (6%) Query: 65 VLESPISFFF--DVSPTVCS---DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L + SFFF D S + D + V +F+ T +GL LNR F++I D ++R I Sbjct: 1 MLHTSPSFFFEQDDSERLAVRELDAPDHADPVAEFLRTKEGLVLNRAFLKIADPQIRATI 60 Query: 120 IELVRSIVSSEKKYRTI 136 I LV ++ +E + T+ Sbjct: 61 IALVTAMGQAESRGPTL 77 >gi|257090579|ref|ZP_05584940.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|294619908|ref|ZP_06699284.1| transcriptional regulator, xre family [Enterococcus faecium E1679] gi|312905109|ref|ZP_07764230.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|256999391|gb|EEU85911.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|291593845|gb|EFF25343.1| transcriptional regulator, xre family [Enterococcus faecium E1679] gi|310631499|gb|EFQ14782.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315163419|gb|EFU07436.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315579063|gb|EFU91254.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 111 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR +R LG +Q++L E + T Q V ++E V L +S L +P+S F D Sbjct: 7 AKVIREKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 V D E + +ST D ++ Sbjct: 67 ---NVVVDYEEEFLALYRSLSTEDAVR 90 >gi|303242323|ref|ZP_07328809.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590162|gb|EFL59924.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 182 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 20/99 (20%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ RI+ R++ G+S+++ + LG++F QKYE G + + PIS Sbjct: 7 DIAARIKGLRLLSGISEKEAAQKLGLSFADFQKYENGEDDI--------------PISIL 52 Query: 74 FDVSPTVCSDIS------SEENNVMDFISTPDGLQLNRY 106 ++++ C D++ S + + + ++ +GL++ RY Sbjct: 53 YEIADFYCVDLTEVLTGVSPKLHDVCYLKKGEGLKVERY 91 >gi|313886599|ref|ZP_07820312.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923955|gb|EFR34751.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] Length = 363 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G+RIR R + GM+ +L + +G++ + E+G + + L +SE L+ PI +F Sbjct: 12 STGERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPIDYF 71 Query: 74 -FDVSPTVCS 82 + +P + S Sbjct: 72 VYQDTPIIES 81 >gi|227355761|ref|ZP_03840154.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227164080|gb|EEI48977.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 76 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 31/48 (64%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 M+ +LG+ L I+ QQ+ +YE+G+N++ L HI + + IS FF+ Sbjct: 1 MTGAELGKLLNISQQQISRYERGINKIPIDILFHILNIFDISISDFFE 48 >gi|332300885|ref|YP_004442806.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177948|gb|AEE13638.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 355 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G+RIR R + GM+ +L + +G++ + E+G + + L +SE L+ PI +F Sbjct: 4 STGERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPIDYF 63 Query: 74 -FDVSPTVCS 82 + +P + S Sbjct: 64 VYQDTPIIES 73 >gi|197103371|ref|YP_002128749.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] gi|196480647|gb|ACG80174.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] Length = 120 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG+ IR+ R +G++Q L E +G+T Q + E+G L+ ++ L++P+ F Sbjct: 18 SVGRAIRMHRERVGLTQAALAEAVGLTEQYIGVVERGARAPSFRTLEALARTLKTPVRDF 77 Query: 74 F 74 F Sbjct: 78 F 78 >gi|153954624|ref|YP_001395389.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347482|gb|EDK34018.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 80 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK IR R+ ++QE+L E GI + +YE G+ +L+ IS+ LE PIS Sbjct: 3 VGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLL 62 Query: 75 DVSPTVCSDISSEENN 90 ++ T SS N+ Sbjct: 63 ELEETEIKKGSSIANS 78 >gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016] gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 83 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK IR R+ ++QE+L E GI + +YE G+ +L+ IS+ LE PIS Sbjct: 6 VGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLL 65 Query: 75 DVSPTVCSDISSEENN 90 ++ T SS N+ Sbjct: 66 ELEETEIKKGSSIANS 81 >gi|290968677|ref|ZP_06560215.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] gi|290781330|gb|EFD93920.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] Length = 226 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 VGKRI+ +R M+ + + LG+T VQ+YE G ++ V LQ I ++L +F Sbjct: 10 VGKRIKKQRKQNNMTLKDIAVKLGVTESTVQRYETGNISNVSIEMLQKIGKILLVSPAFL 69 Query: 74 --FDVSPTVCSDISSEENNVMD 93 +D + V SD+ + ++ +D Sbjct: 70 LGWDSAEKVVSDLEAHKHKFLD 91 >gi|260437613|ref|ZP_05791429.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809966|gb|EFF69171.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 117 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 6/67 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+GKR+R R +SQ+ + + LGI +Q Q+YE G + + +L + E SF Sbjct: 14 NMGKRLRKIRKENALSQDDVADALGICTKQYQRYEYGDSAISCEKLSILEE------SFH 67 Query: 74 FDVSPTV 80 FDV V Sbjct: 68 FDVRYIV 74 >gi|319426396|gb|ADV54470.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] gi|319426403|gb|ADV54477.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 182 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 37/56 (66%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +++++G ++ RR+ L + QE + E LG+T Q V K+E+ + AS++ +S++L Sbjct: 4 LNMSIGSVLKDRRIALNIKQEDIAEQLGLTVQTVSKWERDLTEPKASQVTQLSKIL 59 >gi|213019906|ref|ZP_03335697.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994507|gb|EEB55164.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 314 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 37/64 (57%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++R R+ G +Q+ L +G+T+Q V +YEKG+ ++ +L I++VL I Sbjct: 18 QIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDIIDL 77 Query: 74 FDVS 77 VS Sbjct: 78 IPVS 81 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 41/80 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 171 QIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDL 230 Query: 74 FDVSPTVCSDISSEENNVMD 93 +++ + +E N+++ Sbjct: 231 LELTEDADDKVENELPNLIE 250 >gi|124486416|ref|YP_001031032.1| adenine deaminase [Methanocorpusculum labreanum Z] gi|124363957|gb|ABN07765.1| helix-turn-helix domain protein [Methanocorpusculum labreanum Z] Length = 347 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R + G++QE+LGE + + + KYE G +S L +S L I +FF Sbjct: 3 GERLKQARKLSGLTQEELGELVSVEKMTISKYEAGKISPSSSTLISLSRALHVDIDYFFR 62 Query: 76 VSPTVCS 82 + V + Sbjct: 63 ETSVVLA 69 >gi|148243675|ref|YP_001219915.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|148243717|ref|YP_001219957.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146400238|gb|ABQ28773.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|146400280|gb|ABQ28815.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] Length = 185 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 37/64 (57%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++G +I RR +G+S+ +L L + + + YE+G+ V + L +++ L + Sbjct: 19 LDAHIGGQITARRAEIGLSRRQLAMTLRVPVRGIAAYERGIQHVAPADLFRLAQALGVDL 78 Query: 71 SFFF 74 ++F+ Sbjct: 79 AYFY 82 >gi|145219415|ref|YP_001130124.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205579|gb|ABP36622.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 379 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G R+R RM LG SQEKL EC G+ + E+G + + + I+ L Sbjct: 13 LGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALH 65 >gi|190570687|ref|YP_001975045.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356959|emb|CAQ54347.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 305 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 37/64 (57%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++R R+ G +Q+ L +G+T+Q V +YEKG+ ++ +L I++VL I Sbjct: 9 QIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDIIDL 68 Query: 74 FDVS 77 VS Sbjct: 69 IPVS 72 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 41/80 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 162 QIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDL 221 Query: 74 FDVSPTVCSDISSEENNVMD 93 +++ + +E N+++ Sbjct: 222 LELTEDADDKVENELPNLIE 241 >gi|149189972|ref|ZP_01868250.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1] gi|148836138|gb|EDL53097.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1] Length = 155 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 7/87 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++RL+R G SQE+L E G++ + +Q+ E+G + G L+ ++ V E+ I+ Sbjct: 4 RKLRLQR---GWSQEQLAELSGLSIRTIQRIERG-QKPGLESLKSLAAVFETTIT-ELQQ 58 Query: 77 SPTVCS--DISSEENNVMDFISTPDGL 101 P + S +I+ EE NV+D + + G Sbjct: 59 EPKMTSKVEITQEEQNVIDQVRSIKGF 85 >gi|226328955|ref|ZP_03804473.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] gi|225202141|gb|EEG84495.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] Length = 125 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 38/65 (58%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +G +IR +R L +S + + E +GI+ QQ +YE G+ ++ L HI++ L+ Sbjct: 36 PISQIIGHKIRKQRQQLRLSAKVVAERVGISQQQFSRYENGLCKIDVDMLFHIAQELKVT 95 Query: 70 ISFFF 74 +FF Sbjct: 96 PAFFL 100 >gi|255263387|ref|ZP_05342729.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105722|gb|EET48396.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 139 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 20/124 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+SQE L + LGI ++ +E +N A++LQ +S +L + + Sbjct: 26 GDRVAAAREQAGLSQEALAKQLGIKNGTLRNWEHDLNEPRANKLQMLSGILGVSLMWLL- 84 Query: 76 VSPTVCSDISSEENNVMDFISTPD----GLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 N D IS PD G +N +I VK ++++ + EK Sbjct: 85 -------------NGEGDGISAPDQEDLGGDINAVMTEIRAVKA--QLLQAADRMAKLEK 129 Query: 132 KYRT 135 K R Sbjct: 130 KLRA 133 >gi|294502078|ref|YP_003566143.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] gi|294342062|emb|CBH22727.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] Length = 392 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R MSQ+++ LG+T + +YE G ++GA L+ ++ + P+S F Sbjct: 9 LGQRLRQARKQAHMSQKEVAGHLGVTASALSQYESGKRKIGALALERLARLYSVPLSSLF 68 >gi|284006177|emb|CBA71418.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 130 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SP 69 +G+RI RR LG+ L + +G++ V ++E+GV+ +G +L +ISE L+ SP Sbjct: 9 IGRRIYERRTELGLRAIDLADLIGVSRVAVSQWERGVSVLGGDKLMNISEALKCSP 64 >gi|241763075|ref|ZP_04761136.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241367858|gb|EER62090.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 121 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI +R G++Q +L E LG++ Q VQ YE G R+ + L ++ L + Sbjct: 12 VTLGERIAAQRQACGITQVQLAEVLGVSQQTVQAYEVGRRRIQVAALPTVARTLSLSLEE 71 Query: 73 FF 74 F Sbjct: 72 LF 73 >gi|99035914|ref|ZP_01314962.1| hypothetical protein Wendoof_01000192 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 306 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+E L I Sbjct: 9 KIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVSIVDL 68 Query: 74 FDVS 77 VS Sbjct: 69 IPVS 72 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 41/80 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 162 KIGKKIKEWRIVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDL 221 Query: 74 FDVSPTVCSDISSEENNVMD 93 +++ + +E N+++ Sbjct: 222 LELTEDADDKVENELPNLIE 241 >gi|190894243|ref|YP_001984537.1| hypothetical protein RHECIAT_PB0000280 [Rhizobium etli CIAT 652] gi|190699904|gb|ACE93987.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 259 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + KL LGIT Q +YE GV+R+ SRL H+ EVL++ Sbjct: 145 LPRSKLAPLLGITKQVYGRYENGVSRLTVSRLIHLCEVLDA 185 >gi|291521205|emb|CBK79498.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 111 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ RR+ LGM Q +L E + I+ + E+G+ R G I +VL+ + Sbjct: 9 VEMGKRIKARRVSLGMKQMELAERIDISNNHISSIERGIERPGLESFIRICDVLDVTPDY 68 Query: 73 FF 74 Sbjct: 69 LL 70 >gi|89255371|ref|NP_659804.2| hypothetical protein RHE_PD00235 [Rhizobium etli CFN 42] gi|89213325|gb|AAM54817.2| hypothetical protein RHE_PD00235 [Rhizobium etli CFN 42] Length = 259 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + KL LGIT Q +YE GV+R+ SRL H+ EVL++ Sbjct: 145 LPRSKLAPLLGITKQVYGRYENGVSRLTVSRLIHLCEVLDA 185 >gi|121583517|ref|YP_973943.1| hypothetical protein Pnap_4792 [Polaromonas naphthalenivorans CJ2] gi|120596767|gb|ABM40201.1| protein of unknown function DUF955 [Polaromonas naphthalenivorans CJ2] Length = 395 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR L R GM++ ++ E +G++ + V YEKG S +Q +++ L P +FF Sbjct: 5 KRFSLARRRRGMTKREIAESIGVSERSVSAYEKGDQEPEPSNVQRMTKALNFPEAFFHAA 64 Query: 77 SP 78 P Sbjct: 65 DP 66 >gi|302337267|ref|YP_003802473.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634452|gb|ADK79879.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 222 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V++ +G RIR +R M +L E G+T + + E+ + + L+ I + + PI Sbjct: 10 VNLTLGSRIRAQRNKHNMKISELAELTGLTSSTISQVERALISPSIATLKKICDAMNIPI 69 Query: 71 SFFFD 75 SF FD Sbjct: 70 SFLFD 74 >gi|225861745|ref|YP_002743254.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298229349|ref|ZP_06963030.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255903|ref|ZP_06979489.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503691|ref|YP_003725631.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A] gi|225726429|gb|ACO22280.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298239286|gb|ADI70417.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A] Length = 287 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R LG+SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|301300079|ref|ZP_07206297.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852311|gb|EFK79977.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 242 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 N+G RI+ RR L +S + + E LG++ V +YEKG + +V + L+ ++EVL++ ++ Sbjct: 3 NIGYRIKQRRKELKLSADVVAEKLGVSRSTVFRYEKGDIEKVPTTILEKLAEVLKTTPAY 62 Query: 73 F 73 Sbjct: 63 L 63 >gi|282882172|ref|ZP_06290811.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|281297937|gb|EFA90394.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] Length = 235 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++IR R++ ++ ++L E LG++ +QKYE G +Q IS++L PI+ Sbjct: 1 MTLGEKIRKYRILNNLTMKELSEKLGMSISAIQKYENGTVIPKTDIIQKISKILNVPIN 59 >gi|218133018|ref|ZP_03461822.1| hypothetical protein BACPEC_00879 [Bacteroides pectinophilus ATCC 43243] gi|238925712|ref|YP_002939229.1| hypothetical protein EUBREC_3369 [Eubacterium rectale ATCC 33656] gi|260439193|ref|ZP_05793009.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|217991891|gb|EEC57895.1| hypothetical protein BACPEC_00879 [Bacteroides pectinophilus ATCC 43243] gi|238877388|gb|ACR77095.1| Hypothetical protein EUBREC_3369 [Eubacterium rectale ATCC 33656] gi|291524650|emb|CBK90237.1| Helix-turn-helix [Eubacterium rectale DSM 17629] gi|292808363|gb|EFF67568.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|295093967|emb|CBK83058.1| Helix-turn-helix. [Coprococcus sp. ART55/1] Length = 206 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ LG++Q + E +G+T +Q+YE G ++ L +SE L + + Sbjct: 10 IGSRAKQRRLELGVNQPYIAEKMGVTASTIQRYEAGTIDNTKKLVLDGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + + SD++ Sbjct: 70 KGETEEMTSDVT 81 >gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] Length = 295 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 8/67 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ + +++ R GMSQE+L E LG++ Q V K+E G G +++I I Sbjct: 1 MDMTFAENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETG---AGIPDIENI-----MAI 52 Query: 71 SFFFDVS 77 S FD+S Sbjct: 53 SMLFDIS 59 >gi|218513063|ref|ZP_03509903.1| hypothetical protein Retl8_04857 [Rhizobium etli 8C-3] Length = 168 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + KL LGIT Q +YE GV+R+ SRL H+ EVL++ Sbjct: 54 LPRSKLAPLLGITKQVYGRYENGVSRLTVSRLIHLCEVLDA 94 >gi|221065568|ref|ZP_03541673.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220710591|gb|EED65959.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 108 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 D G R++ R+ G+SQ+ LG GI ++ +YE G+++ ++ ++EVL Sbjct: 4 ADEQWGARLKQARLAAGLSQKMLGIEAGIDAFVASTRINRYELGIHKPDLLTVRKLAEVL 63 Query: 67 ESPISFFF 74 + P++FF+ Sbjct: 64 KVPVAFFY 71 >gi|238783913|ref|ZP_04627930.1| Predicted transcriptional regulator [Yersinia bercovieri ATCC 43970] gi|238715152|gb|EEQ07147.1| Predicted transcriptional regulator [Yersinia bercovieri ATCC 43970] Length = 87 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 28 MSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQ+KLG G + ++ +YEKGV+ V + +++VLE P+++F+ Sbjct: 1 MSQKKLGIAAGLDEFVASTRINRYEKGVHEVSIEMAKQLADVLEVPLAYFY 51 >gi|261208045|ref|ZP_05922720.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565524|ref|ZP_06445972.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294615155|ref|ZP_06695039.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|314938404|ref|ZP_07845695.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314942329|ref|ZP_07849177.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951463|ref|ZP_07854513.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314993126|ref|ZP_07858512.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996009|ref|ZP_07861087.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|260077629|gb|EEW65345.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162722|gb|EFD10574.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291591975|gb|EFF23600.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|313589763|gb|EFR68608.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313592366|gb|EFR71211.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596420|gb|EFR75265.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598946|gb|EFR77791.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642302|gb|EFS06882.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 111 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR +R LG +Q++L E + T Q V ++E V L +S L +P+S F D Sbjct: 7 AKVIREKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 >gi|89095957|ref|ZP_01168851.1| hypothetical protein B14911_04469 [Bacillus sp. NRRL B-14911] gi|89089703|gb|EAR68810.1| hypothetical protein B14911_04469 [Bacillus sp. NRRL B-14911] Length = 292 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R +LG+SQ++L E GI Q Q+ K EKG AS L IS+ L +++F Sbjct: 6 IGQKIRDLRKLLGLSQKELAE--GICTQAQISKIEKGDVYPYASTLYLISQKLGVDVNYF 63 Query: 74 FDVSPT 79 F + T Sbjct: 64 FHIGTT 69 >gi|311064246|ref|YP_003970971.1| hypothetical protein BBPR_0856 [Bifidobacterium bifidum PRL2010] gi|310866565|gb|ADP35934.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum PRL2010] Length = 405 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+++R R+ G++ +L E G++ Q + KYEK N S L ++ L PIS+F Sbjct: 16 GEKLRKARLYRGLTLTELAEETGVSKQALSKYEKNQNEPTPSNLFALARSLNFPISYF 73 >gi|225869607|ref|YP_002745554.1| phage repressor protein [Streptococcus equi subsp. equi 4047] gi|225699011|emb|CAW92101.1| phage repressor protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +++G +++ RR+ + +S E+L + LG++ + +YEKG + +V L+ IS++L + + Sbjct: 1 MDIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVPTEVLEKISKILNTNPA 60 Query: 72 FFFDVSPT 79 +F S T Sbjct: 61 YFMGWSDT 68 >gi|323126526|gb|ADX23823.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 36/60 (60%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + E LGI++Q +E+GV A ++ + ++L P +F ++ Sbjct: 5 EKLKERRKELKLTQKDIAEKLGISYQAYSAWERGVKEPSAEKVSQLEKLLNVPKGYFTEI 64 >gi|295108419|emb|CBL22372.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 124 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + ++IR R G+SQE L E GI ++KYE G+ + +L+ I++ LE Sbjct: 26 DMEINEKIRYFRKQRGISQELLAERTGINVNTIRKYEIGIRKPKVEQLKKIADGLEISAI 85 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL 101 F D+ +D+ + + F DGL Sbjct: 86 EFLDIEIENEADLIAMLKKISPFFKW-DGL 114 >gi|218673691|ref|ZP_03523360.1| hypothetical protein RetlG_20083 [Rhizobium etli GR56] gi|218682865|ref|ZP_03530466.1| hypothetical protein RetlC8_29094 [Rhizobium etli CIAT 894] gi|327193314|gb|EGE60219.1| hypothetical protein RHECNPAF_170017 [Rhizobium etli CNPAF512] Length = 168 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + KL LGIT Q +YE GV+R+ SRL H+ EVL++ Sbjct: 54 LPRSKLAPLLGITKQVYGRYENGVSRLTVSRLIHLCEVLDA 94 >gi|262201416|ref|YP_003272624.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084763|gb|ACY20731.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 93 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 34/71 (47%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K PV + G+RIR RR LG+SQE +GI + Q+ K E+G V + I+ Sbjct: 11 KSALKPVLVEFGRRIRARREELGLSQEAAAVSIGIHWTQLGKVERGQRSVRVENIVKIAA 70 Query: 65 VLESPISFFFD 75 L + D Sbjct: 71 GLSTTPGALLD 81 >gi|167904497|ref|ZP_02491702.1| helix-turn-helix domain protein [Burkholderia pseudomallei NCTC 13177] Length = 111 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 44/85 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I +R+ ++QE + E LGI + V + E+GV RL ++++ E + Sbjct: 2 VGRAIAKQRIACDLTQEAVAERLGIGLEAVSRMERGVVIPTVVRLFELADIFECDAADLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + + SD +S N ++ +ST D Sbjct: 62 TEASSRSSDQASHLNRLLSRLSTAD 86 >gi|229192127|ref|ZP_04319095.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] gi|228591334|gb|EEK49185.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] Length = 118 Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG ++ +++ P + F Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPTDYLF 63 Query: 75 DVS 77 S Sbjct: 64 GKS 66 >gi|123441735|ref|YP_001005719.1| putative prophage repressor protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088696|emb|CAL11500.1| putative prophage repressor protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 240 Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 9/102 (8%) Query: 5 KKIPNPVDINVGKRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 KK P ++ KR++ ++ LG+SQE + LG+ V ++ G+N + + Sbjct: 3 KKPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVTNAA 62 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++VL PIS F SP++ ++++ ++ IS+P+ L Sbjct: 63 AFAKVLNEPISSF---SPSLATELAKMAESLS--ISSPNRLN 99 >gi|218960438|ref|YP_001740213.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] gi|167729095|emb|CAO80006.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] Length = 356 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG++I+ R L +S ++L + LG+T + YE+G +V L ISE+++ P+ + Sbjct: 1 MNVGEKIKKYRKRLNISGKELAQKLGVTPALISYYEQGKRQVPLKTLMQISEIIKVPLEY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|328955378|ref|YP_004372711.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455702|gb|AEB06896.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 210 Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQ +L + +G T QQ+ +YE G N V +S L +S L IS+ + Sbjct: 5 KISEARHAKGWSQAELAKRIGTTQQQIARYESGDNDVKSSVLIKLSSALGVTISYLLGLE 64 Query: 78 PTVCS 82 TV + Sbjct: 65 NTVAA 69 >gi|332162334|ref|YP_004298911.1| putative prophage repressor protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606400|emb|CBY27898.1| putative cI prophage repressor protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325666564|gb|ADZ43208.1| putative prophage repressor protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 207 Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 7/85 (8%) Query: 5 KKIPNPVDINVGKRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 KK P ++ KR++ ++ LG+SQE + LG+ V ++ G+N + + Sbjct: 3 KKPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVTNAA 62 Query: 61 HISEVLESPISFFFDVSPTVCSDIS 85 ++VL PIS F SP++ ++++ Sbjct: 63 AFAKVLNEPISSF---SPSLATELA 84 >gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] Length = 126 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G IR R G++Q+KLGE GI ++KYE G LQ I++ L+ P++ Sbjct: 5 TGDMIRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64 >gi|312976783|ref|ZP_07788532.1| putative zinc-binding transcriptional regulator, Cro/CI family [Lactobacillus crispatus CTV-05] gi|310896111|gb|EFQ45176.1| putative zinc-binding transcriptional regulator, Cro/CI family [Lactobacillus crispatus CTV-05] Length = 385 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R+ ++ L + +G++ Q + KYE + ++ Q I +VL P+ FF D Sbjct: 12 GKRLKEARLFNHLTMSALADQIGVSKQAISKYEHNKIEISSAVFQKIVQVLNFPLYFFTD 71 Query: 76 VSPTVCSD 83 D Sbjct: 72 FEKVPYQD 79 >gi|271502478|ref|YP_003335504.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270346033|gb|ACZ78798.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 110 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R++ G+SQ+ LG GI ++ +YEKGV+ + ++E L P+++ Sbjct: 13 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANIVTAKRLAEALNVPLAY 72 Query: 73 FF 74 F+ Sbjct: 73 FY 74 >gi|260892586|ref|YP_003238683.1| helix-turn-helix domain protein [Ammonifex degensii KC4] gi|260864727|gb|ACX51833.1| helix-turn-helix domain protein [Ammonifex degensii KC4] Length = 349 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R+ G+S L E +G++ Q + KYE+G++ G+ L ++E L +F Sbjct: 10 QIGLRIKEARLSRGLSLRALAEKVGVSAQAISKYERGLDIPGSGVLLRLAEALGVKWEYF 69 Query: 74 FDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDV 113 C + SS + I+T L RY ++++D+ Sbjct: 70 IRPRRVECLEPAYRKRSSLPAKELKAITTRAKEHLERY-LEVEDL 113 >gi|225575479|ref|ZP_03784089.1| hypothetical protein RUMHYD_03569 [Blautia hydrogenotrophica DSM 10507] gi|225037331|gb|EEG47577.1| hypothetical protein RUMHYD_03569 [Blautia hydrogenotrophica DSM 10507] Length = 123 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R I G+SQ LGE GI + KYE G +L I+ L I+ Sbjct: 1 MTVGEKIKTFRTIRGISQNMLGELAGIGGTTILKYELGSQNPKPDQLLKIANALGVSINV 60 Query: 73 FFDVSPTVCSDI 84 D SD+ Sbjct: 61 LTDFDIETASDV 72 >gi|77404491|ref|YP_345067.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|77019872|dbj|BAE46247.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 89 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 8 PNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P D+ V GKRIR+ R+ GM+Q +L + G+ +++ EKG AS+L I+ V Sbjct: 5 PTARDLAVELGKRIRIERVERGMAQLELVKRTGLADSTIRRIEKGTRDASASQLHTIAGV 64 Query: 66 LESPIS 71 P+S Sbjct: 65 FGMPLS 70 >gi|291544659|emb|CBL17768.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Ruminococcus sp. 18P13] Length = 208 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +N+G+RI+ R + +Q++L + +G T Q V KYE G + + + +++ I++ L + Sbjct: 1 MNIGERIKTARKEIDKTQQELADAIGTTKQNVYKYENGIITNIPSDKIEAIAKFLHVSPA 60 Query: 72 FFF 74 + F Sbjct: 61 YLF 63 >gi|228920891|ref|ZP_04084230.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838822|gb|EEM84124.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 126 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 15/103 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R + +SQ++L + LG+T Q+ +YE+G ++ I++ +F Sbjct: 7 LGDRIRYLRELNNLSQKRLSDALGLTNTQLSRYERGERNPEPETIKLIAD--------YF 58 Query: 75 DVSPTVCSDISSEENNVM----DFISTPDGLQLNRYFIQIDDV 113 DV+ + NN+ DF + D +L +F I D Sbjct: 59 DVTTDY---LHGRTNNINYTNPDFKNILDDAELGLWFKDIKDA 98 >gi|322392726|ref|ZP_08066186.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321144718|gb|EFX40119.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 228 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 36/57 (63%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ + LGI+FQ +E+GV +++ + ++L+ P +F Sbjct: 5 EKLKARRKELKLTQKEIADQLGISFQAYSAWERGVKEPSEEKVKQLEKILKVPKGYF 61 >gi|45597387|ref|NP_996677.1| phage repressor [Lactococcus phage phiLC3] gi|21617869|gb|AAK07510.2|AF242738_1 phage repressor [Lactococcus phage phiLC3] Length = 286 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G+SQE+L + +G+ + YE G+ +L +SEV + I FF Sbjct: 10 VGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAIDDFF 69 Query: 75 DVSPTVCSDISS 86 + + ++SS Sbjct: 70 PQTDSTRMNVSS 81 >gi|330859120|emb|CBX69474.1| repressor protein CI [Yersinia enterocolitica W22703] Length = 144 Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 7/85 (8%) Query: 5 KKIPNPVDINVGKRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 KK P ++ KR++ ++ LG+SQE + LG+ V ++ G+N + + Sbjct: 3 KKPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVTNAA 62 Query: 61 HISEVLESPISFFFDVSPTVCSDIS 85 ++VL PIS F SP++ ++++ Sbjct: 63 AFAKVLNEPISSF---SPSLATELA 84 >gi|255972572|ref|ZP_05423158.1| predicted protein [Enterococcus faecalis T1] gi|256762720|ref|ZP_05503300.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|257422398|ref|ZP_05599388.1| predicted protein [Enterococcus faecalis X98] gi|255963590|gb|EET96066.1| predicted protein [Enterococcus faecalis T1] gi|256683971|gb|EEU23666.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|257164222|gb|EEU94182.1| predicted protein [Enterococcus faecalis X98] Length = 253 Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLES 68 +NVG+R++LRR L +S +K+ LG++ + +YEKG + ++ RL I+++L++ Sbjct: 12 MNVGERMKLRRKELNISADKIANELGVSRSTIFRYEKGDIEKLPTERLITIAKILKT 68 >gi|268590865|ref|ZP_06125086.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291313648|gb|EFE54101.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 112 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 M K P P+ VG +R RR+ G++ +G L I+ QQV +YE+G NR+ Sbjct: 1 MANESKHP-PISHVVGGYLRRRRLDKGLTGRDVGRLLNISQQQVSRYERGSNRM 53 >gi|238797083|ref|ZP_04640586.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] gi|238719128|gb|EEQ10941.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] Length = 88 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 28 MSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQ+KLG G + ++ +YEKGV+ V + +++VLE P+++F+ Sbjct: 1 MSQKKLGIAAGLDEFVASTRINRYEKGVHEVSITTANQLAQVLEVPLAYFY 51 >gi|328477026|gb|EGF47309.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 106 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 41/75 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L S+E+L + + + QQV ++EKG++ +L IS+ LE + Sbjct: 3 IGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 75 DVSPTVCSDISSEEN 89 P + I ++N Sbjct: 63 QSDPKLQKTIQIDKN 77 >gi|238796818|ref|ZP_04640323.1| Prophage repressor protein [Yersinia mollaretii ATCC 43969] gi|238719306|gb|EEQ11117.1| Prophage repressor protein [Yersinia mollaretii ATCC 43969] Length = 240 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 9/102 (8%) Query: 5 KKIPNPVDINVGKRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 KK P ++ KR++ ++ LG+SQE + LG+ V ++ G+N + + Sbjct: 3 KKPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVTNAA 62 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++VL PIS F SP++ +++ ++ IST GL+ Sbjct: 63 AFAKVLNEPISSF---SPSLAKELAKMAESLS--ISTRSGLK 99 >gi|288561750|ref|YP_003429156.1| transcriptional regulator XRE [Bacillus pseudofirmus OF4] gi|288548382|gb|ADC52264.1| transcriptional regulator, XRE [Bacillus pseudofirmus OF4] Length = 292 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 22/120 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++GK I+ R G+SQ +L + GI Q + EKG N V A L I+E L I+ Sbjct: 4 LDIGKNIKDLREYYGISQRELAK--GICTQPTISNIEKGENFVAAQLLHMIAERLGVDIN 61 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +FF+++ T D +E Y+I++ VRQ + ++SSEK Sbjct: 62 YFFNIAETPKIDYMNE----------------TFYYIRL---YVRQGKFTEAKKLISSEK 102 >gi|13487804|ref|NP_108682.1| cI2009 [Lactococcus phage Tuc2009] gi|509672|gb|AAA21825.1| cI2009 [Bacteriophage Tuc2009] Length = 286 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G+SQE+L + +G+ + YE G+ +L +SEV + I FF Sbjct: 10 VGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAIDDFF 69 Query: 75 DVSPTVCSDISS 86 + + ++SS Sbjct: 70 PQTDSTRMNVSS 81 >gi|255690854|ref|ZP_05414529.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|260623486|gb|EEX46357.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] Length = 132 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +++GK+I R + GM+Q +LGE LGIT Q V K E+ ++ RL+ I+ L Sbjct: 12 LHLGKKIERVRRLRGMTQTELGELLGITKQAVSKMEQ-TEKIDDERLEKIASAL 64 >gi|199598993|ref|ZP_03212401.1| putative regulatory protein [Lactobacillus rhamnosus HN001] gi|199590101|gb|EDY98199.1| putative regulatory protein [Lactobacillus rhamnosus HN001] Length = 106 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 41/75 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L S+E+L + + + QQV ++EKG++ +L IS+ LE + Sbjct: 3 IGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 75 DVSPTVCSDISSEEN 89 P + I ++N Sbjct: 63 KSDPKLQKTIQIDKN 77 >gi|260596321|ref|YP_003208892.1| hypothetical protein CTU_05290 [Cronobacter turicensis z3032] gi|260215498|emb|CBA27640.1| hypothetical protein CTU_05290 [Cronobacter turicensis z3032] Length = 103 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R G+SQ+KLG GI ++ +YEKGV++ + +++ L P+++ Sbjct: 13 KRLKTAREAKGLSQKKLGILAGIDEFVASARINRYEKGVHQASIEIARKLADALAVPLAY 72 Query: 73 FF 74 F+ Sbjct: 73 FY 74 >gi|319650688|ref|ZP_08004827.1| hypothetical protein HMPREF1013_01432 [Bacillus sp. 2_A_57_CT2] gi|317397545|gb|EFV78244.1| hypothetical protein HMPREF1013_01432 [Bacillus sp. 2_A_57_CT2] Length = 294 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR R ++ +SQ +L + GI Q Q+ K EKG AS L ISE L +++F Sbjct: 6 IGQRIRELRKLMNLSQGELAK--GICTQAQISKIEKGDVYPYASTLYLISERLGVDVNYF 63 Query: 74 FDVSPT 79 FD+ T Sbjct: 64 FDIGTT 69 >gi|307133108|ref|YP_003885124.1| transcriptional regulator [Dickeya dadantii 3937] gi|306530637|gb|ADN00568.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 112 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R++ G+SQ+ LG GI ++ +YEKGV+ + ++E L P+++ Sbjct: 20 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANIVTAKRLAEALNVPLAY 79 Query: 73 FF 74 F+ Sbjct: 80 FY 81 >gi|315167306|gb|EFU11323.1| peptidase S24-like domain protein [Enterococcus faecalis TX1341] Length = 273 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLES 68 +NVG+R++LRR L +S +K+ LG++ + +YEKG + ++ RL I+++L++ Sbjct: 32 MNVGERMKLRRKELNISADKIANELGVSRSTIFRYEKGDIEKLPTERLITIAKILKT 88 >gi|210620995|ref|ZP_03292380.1| hypothetical protein CLOHIR_00323 [Clostridium hiranonis DSM 13275] gi|210154979|gb|EEA85985.1| hypothetical protein CLOHIR_00323 [Clostridium hiranonis DSM 13275] Length = 362 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 4/78 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ + I+ +R L ++QE+L LG++ V K+E G + + L +++++L++ I+ Sbjct: 1 MNINQIIKEKRKALSLTQEQLANQLGVSTPAVSKWESGASYPDITILPNLAKILKTDINT 60 Query: 73 FFDVSPTVCSDISSEENN 90 + SD+S EE N Sbjct: 61 LL----SFQSDLSDEEIN 74 >gi|160902585|ref|YP_001568166.1| XRE family transcriptional regulator [Petrotoga mobilis SJ95] gi|160360229|gb|ABX31843.1| transcriptional regulator, XRE family [Petrotoga mobilis SJ95] Length = 105 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF---D 75 I+ RR+ +G++Q+ L E +G T + K+EKG LQ ++EVL I +F D Sbjct: 23 IKKRRLQMGITQKDLAERMGTTQAIISKFEKGNYNPTYLFLQRLTEVLGGSIKLYFEPRD 82 Query: 76 VSPTVCSDISSEEN 89 D+S +N Sbjct: 83 DKEINSDDVSKNDN 96 >gi|330831318|ref|YP_004394270.1| putative Zn peptidase [Aeromonas veronii B565] gi|328806454|gb|AEB51653.1| Putative Zn peptidase [Aeromonas veronii B565] Length = 375 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 6/122 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+RL R++ G + ++LGE + ++ Q + +YE + + ++E L FF Sbjct: 7 GERLRLARILNGFTLQELGEAVSVSRQSIHQYESDIRAPASDVTNALAEYLRVQPDFF-- 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + D+ E+ + +TP G++ +Q + Q + EL + E K+ Sbjct: 65 -ERPLSGDVKPEQCHFRKRQTTPVGVKER---VQAYSTILEQLVTELHEHLDMPENKFNL 120 Query: 136 IE 137 I+ Sbjct: 121 ID 122 >gi|119490385|ref|ZP_01622863.1| hypothetical protein L8106_13825 [Lyngbya sp. PCC 8106] gi|119454044|gb|EAW35198.1| hypothetical protein L8106_13825 [Lyngbya sp. PCC 8106] Length = 79 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 25/44 (56%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 +P I + IR R+ LG+SQ K GE LG+ FQ V +E G Sbjct: 1 MPVATTIEIPTLIRTLRLRLGLSQRKFGEQLGVVFQTVNNWENG 44 >gi|331659971|ref|ZP_08360909.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206] gi|315296978|gb|EFU56258.1| helix-turn-helix protein [Escherichia coli MS 16-3] gi|331053186|gb|EGI25219.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206] Length = 370 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG--VNRVGASRLQHISEVLESPISFFF 74 +R+R+ R G++Q L E +T + + YEK + + + ++ IS VL PI FF Sbjct: 5 ERLRIARERRGLTQRALAEATELTSKTISNYEKAGIFDAIASDTMERISAVLGYPIEFFL 64 Query: 75 D-----VSPTVCS 82 D +SP S Sbjct: 65 DRDVPTLSPEAVS 77 >gi|212711630|ref|ZP_03319758.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] gi|212685732|gb|EEB45260.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 40.0 bits (92), Expect = 0.098, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +IR R G+S +KL E +GI+ Q + +YE G + L H S + ++FF Sbjct: 9 VGLKIRALRESRGISGKKLSELMGISQQHLSRYENGDVNIHVDTLYHFSLIFSVDPAYFF 68 >gi|167620618|ref|ZP_02389249.1| helix-turn-helix domain protein [Burkholderia thailandensis Bt4] Length = 114 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I +R+I G++Q+K+ E LGI + V + E+GV RL ++++ + + Sbjct: 5 VGRAIAKQRVISGLTQDKVAERLGIGLEAVSRMERGVVIPTVVRLFELADIFQCDAADLL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + + SD +S ++ +S D Sbjct: 65 TEASSRSSDQASHLTRLLSRLSAAD 89 >gi|54022032|ref|YP_116274.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54013540|dbj|BAD54910.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 202 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+ IR RR LG+ Q +L E +G+T +Q+ +YE G AS + ++ L + Sbjct: 4 DIGEIIRDRREALGLGQRELSERVGVTERQIGRYESGAQEPAASTCRLLARALHLSFAQL 63 Query: 74 FDVSPTVCSDISSE 87 F P + D+S + Sbjct: 64 FGEVP-IGLDLSGQ 76 >gi|256024105|ref|ZP_05437970.1| Repressor protein C2 [Escherichia sp. 4_1_40B] Length = 208 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R + G SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTGTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSIDYIL 63 >gi|116617221|ref|YP_817592.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096068|gb|ABJ61219.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 240 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R G++Q++ E L I+FQ V +E+ + I E + P+ FF Sbjct: 3 IGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKGHPTTEMMLLIIEKFDLPLDFFI 62 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + PT + + EE ++ F++ Sbjct: 63 -IPPTNSCEDNDEELILLSFLA 83 >gi|307273982|ref|ZP_07555192.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306509290|gb|EFM78350.1| helix-turn-helix protein [Enterococcus faecalis TX0855] Length = 111 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 7 AKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 V D E + +ST D ++ Sbjct: 67 ---NVVVDYEEEFLALYRSLSTEDAIR 90 >gi|153971519|ref|YP_001393059.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|153971715|ref|YP_001393216.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955041|emb|CAL25393.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955200|emb|CAL25550.1| DNA-binding protein RDGA [Vibrio vulnificus] Length = 208 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 13 INVGKRIR-LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G RI+ LR L +S+++LG LG++ V ++E GVN RL +S VL++ Sbjct: 1 MSLGGRIKKLREESLHISKKELGAILGVSQSAVNQWENGVNYPSQKRLIELSRVLKTTYE 60 Query: 72 FFFDVSPTVCSDISSEE 88 + + + + +D S E Sbjct: 61 WLVNGTTSSHNDGSEYE 77 >gi|281492863|ref|YP_003354843.1| phage Cro/CI transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281376515|gb|ADA66001.1| Phage protein, transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 203 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI++ R G+SQ++L + LG+T Q V YEKG L IS++L P + Sbjct: 2 ERIKIARQKKGISQKELADLLGLTQQAVSYYEKGSRIPDEHILSVISDILNVPTEYL 58 >gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] Length = 126 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G IR R G++Q+KLGE GI ++KYE G LQ I++ L+ P++ Sbjct: 5 TGDMIRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64 >gi|197286070|ref|YP_002151942.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227356586|ref|ZP_03840973.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194683557|emb|CAR44421.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227163342|gb|EEI48269.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 102 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G IR R+ ++ +LGE L ++ QQ+ +YE G+ + L I ++L++ S F Sbjct: 17 NIGNFIRESRIRKSLTGAQLGELLDVSQQQISRYENGITSINIETLDMILKLLDADWSEF 76 Query: 74 F 74 + Sbjct: 77 Y 77 >gi|21231057|ref|NP_636974.1| hypothetical protein XCC1604 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768938|ref|YP_243700.1| hypothetical protein XC_2631 [Xanthomonas campestris pv. campestris str. 8004] gi|21112686|gb|AAM40898.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574270|gb|AAY49680.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 113 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 6/74 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R+R RM +G +Q +L E +G+ +V +YE G + + + +++ L+ P+ Sbjct: 12 GTRLRHARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDPATAEALAKALKLPV 71 Query: 71 SFFFDVSPTVCSDI 84 ++F S V +DI Sbjct: 72 AYFHATS-DVLADI 84 >gi|229194032|ref|ZP_04320926.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228589432|gb|EEK47357.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DINVG +I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 DINVGHKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 63 NFF------LEDTNTEE 73 >gi|166032918|ref|ZP_02235747.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] gi|166027275|gb|EDR46032.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] Length = 298 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +GK I +R LGM+Q++L E LG++ + V K+E+GV S + + +L Sbjct: 4 IKIGKYIASKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSIL 57 >gi|322412563|gb|EFY03471.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 248 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +++G +++ RR+ + +S E+L + LG++ + +YEKG + +V L+ IS++L + + Sbjct: 1 MDIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVPTEVLEKISKILNTNPA 60 Query: 72 FFFDVSPT 79 +F S T Sbjct: 61 YFMGWSDT 68 >gi|320546716|ref|ZP_08041027.1| transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320448595|gb|EFW89327.1| transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 228 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR+ LG+ Q +L + LGI+ Q +EKG ++ + L + E+L+ P +F Sbjct: 5 EKLKNRRLELGLKQTELAKQLGISKQSYFAWEKGTSQPTKANLLKLEELLQVPHGYF 61 >gi|50122315|ref|YP_051482.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] gi|49612841|emb|CAG76291.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] Length = 133 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI R G++Q +L E LG++ Q VQ +E G R+ S L ++++ + Sbjct: 24 MALGERITTLRKERGITQAELAEKLGVSQQTVQAWEAGRRRIKVSSLPSVAQIFSVSLEE 83 Query: 73 FFDVSP 78 F +P Sbjct: 84 VFGEAP 89 >gi|189009165|ref|YP_001928047.1| putative transcriptional regulator [Klebsiella pneumoniae] gi|171850706|gb|ACB55445.1| putative transcriptional regulator [Klebsiella pneumoniae] Length = 119 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V KR++ R +G+SQEKL E +GI T ++ YE G S +Q I++VL P Sbjct: 2 VPKRLKEARKAVGLSQEKLSELIGIEGVSTRSRLSSYEIGRTEPPFSLVQKIADVLGYPE 61 Query: 71 SFFF 74 +F+ Sbjct: 62 YYFY 65 >gi|228904583|ref|ZP_04068659.1| hypothetical protein bthur0014_57190 [Bacillus thuringiensis IBL 4222] gi|228855064|gb|EEM99647.1| hypothetical protein bthur0014_57190 [Bacillus thuringiensis IBL 4222] Length = 394 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++L R MS L E L I+ Q + KYEK ++ G + + VL P F+F+ Sbjct: 8 GERLKLARRFNAMSLLDLAEKLSISKQMISKYEKNISPPGGEIMLQLEGVLGFPRKFYFE 67 >gi|84687357|ref|ZP_01015236.1| putative transcriptional regulator [Maritimibacter alkaliphilus HTCC2654] gi|114762538|ref|ZP_01441982.1| putative transcriptional regulator [Pelagibaca bermudensis HTCC2601] gi|84664654|gb|EAQ11139.1| putative transcriptional regulator [Rhodobacterales bacterium HTCC2654] gi|114544793|gb|EAU47798.1| putative transcriptional regulator [Roseovarius sp. HTCC2601] Length = 124 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R LG+ Q+++ + L I + + E G RV A L ++++ P+++F Sbjct: 18 MGERLREARRYLGLKQDEVAQYLKIQRTALSEIEAGNRRVEALELNRLAKLYRQPVAYFI 77 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 D + ++ D++ D +S D +L R+ Sbjct: 78 GEDDAAGSLPVDVAHLARQAAD-LSRQDRDELGRF 111 >gi|325923357|ref|ZP_08185028.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] gi|325546177|gb|EGD17360.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] Length = 94 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGA 56 MV +++P +R+R R + G+SQ LG G + +V +YE GV++ Sbjct: 1 MVEKRQLPV-----YSRRLREARQVYGLSQRNLGIKAGLDDFVASTRVNRYETGVHQPDL 55 Query: 57 SRLQHISEVLESPISFFF 74 +Q ++ L+ P+++F+ Sbjct: 56 QTIQRLANALDVPVAYFY 73 >gi|238790799|ref|ZP_04634557.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] gi|238721114|gb|EEQ12796.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] Length = 234 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 31/49 (63%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 RIR+RR+ L ++Q +L + +G++ V K+E G+ + L +++VL Sbjct: 22 RIRIRRLQLDLTQVQLAKAIGVSRVSVTKWESGITKPDGENLHRLAQVL 70 >gi|310640682|ref|YP_003945440.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245632|gb|ADO55199.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 122 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 45/99 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G RI R G+ QE+L + LGIT + YEK + L ++++ E I + Sbjct: 1 MNYGTRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFETLTKLADIFEVTIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + + S+ +D + D L R+ + ID Sbjct: 61 LVGRTSHPTAILDSDVREFVDQLELSDENILQRFNLTID 99 >gi|291548676|emb|CBL24938.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 129 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RI+ RR LGMSQE+L +G + + K E G+ + S+++ I++ L++ + Sbjct: 1 MTIGERIKARRDELGMSQEELAHKIGYKSKTSINKIELGIQELRQSKIKQIADALQTTPA 60 Query: 72 FFFDVSPT 79 + T Sbjct: 61 YIMGWKET 68 >gi|238788598|ref|ZP_04632390.1| Prophage repressor protein [Yersinia frederiksenii ATCC 33641] gi|238723193|gb|EEQ14841.1| Prophage repressor protein [Yersinia frederiksenii ATCC 33641] Length = 240 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 5 KKIPNPVDINVGKRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 KK P ++ KR++ ++ LG+SQE + LG+ V ++ G+N + + Sbjct: 3 KKPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVTNAA 62 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++VL PIS F SP++ +++ ++ IST GL Sbjct: 63 AFAKVLNEPISSF---SPSLAKELAKMAESLS--ISTRSGLN 99 >gi|319936291|ref|ZP_08010709.1| hypothetical protein HMPREF9488_01542 [Coprobacillus sp. 29_1] gi|319808667|gb|EFW05211.1| hypothetical protein HMPREF9488_01542 [Coprobacillus sp. 29_1] Length = 142 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 15/88 (17%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-----VQKYEKGVNRVGASRLQHISEVLE 67 +N+GKRI+ RM+ GM QE+L +G+ + + + +YE G L+ ISE L Sbjct: 1 MNIGKRIKYVRMLRGMRQEELAGKVGLGYNENGRTRISQYENGKRTPKEDMLEKISEAL- 59 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFI 95 +V S + E ++DFI Sbjct: 60 -------NVESYYLS--TKEHTAILDFI 78 >gi|283835271|ref|ZP_06355012.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] gi|291068429|gb|EFE06538.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 108 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ++LG GI ++ +YEKGV+ + +S VL P+++ Sbjct: 13 RRLKQARLASGLSQKRLGIAAGIDEFVASTRINRYEKGVHEPNTEIVLKLSAVLRVPVAY 72 Query: 73 FF 74 F+ Sbjct: 73 FY 74 >gi|46019830|emb|CAE52354.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 228 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 14/60 (23%), Positives = 37/60 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + LGI++Q +E+GV +++ + ++L+ P +F ++ Sbjct: 5 EKLKARRKELKLTQKNIADQLGISYQAYSAWERGVKEPSKEKVKRLEQILKVPRGYFTEI 64 >gi|150378020|ref|YP_001314615.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032567|gb|ABR64682.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 219 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L + G++ + K E G + LQ +S+ L Sbjct: 29 NNLEMAIGHEVRTYRKKLGITVADLAQATGMSIGMLSKIENGNISPSLTTLQALSKALGV 88 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF EE N F+ +G+ L R Sbjct: 89 PLTAFFR---------GFEEPNSASFVKAGEGVNLER 116 >gi|257084636|ref|ZP_05578997.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256992666|gb|EEU79968.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] Length = 246 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEV 65 IPN +I G RI++ R L ++ ++ + +G++ + V ++EKG ++ + ++ ISE+ Sbjct: 7 IPNS-NIEFGNRIKVVRTDLNLTMDEFAKRIGVSGKSTVNEWEKGRSKPNKNAMKKISEI 65 Query: 66 LESPISFFFDVSP 78 P+ +F+ P Sbjct: 66 SNVPLEWFYFGDP 78 >gi|126179337|ref|YP_001047302.1| hypothetical protein Memar_1391 [Methanoculleus marisnigri JR1] gi|125862131|gb|ABN57320.1| protein of unknown function DUF955 [Methanoculleus marisnigri JR1] Length = 342 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R+ G+SQ L E +G++ + KYE G + L +SE+L + + Sbjct: 1 MTIGERIKSARIGAGLSQRNLAEKMGLSAMAISKYENGEVTPRSGLLIQMSEMLGVNVDY 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|325830857|ref|ZP_08164241.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325487264|gb|EGC89707.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 197 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G IR R G++Q +L + LG+T + V K+E+G L +SE L +P+ Sbjct: 5 NTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDVELLPGLSERLGTPVETL 64 Query: 74 FD 75 D Sbjct: 65 LD 66 >gi|307277179|ref|ZP_07558283.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506109|gb|EFM75275.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|323481377|gb|ADX80816.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 111 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 7 AKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 V D E + +ST D ++ Sbjct: 67 ---NVVVDYEEEFLALYRSLSTEDAVR 90 >gi|75762322|ref|ZP_00742202.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218897473|ref|YP_002445884.1| DNA-binding protein [Bacillus cereus G9842] gi|228904512|ref|ZP_04068598.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74490185|gb|EAO53521.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544400|gb|ACK96794.1| DNA-binding protein [Bacillus cereus G9842] gi|228855117|gb|EEM99690.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 184 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF D S+EE Sbjct: 63 NFF------LEDTSTEE 73 >gi|332654251|ref|ZP_08419995.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517337|gb|EGJ46942.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +RI L R G+SQE+LGE LG++ Q V K+E G N + L + + Sbjct: 5 ERIALARKQAGLSQEQLGEKLGVSRQAVSKWESGQNNPDVAYLAEMCRLF 54 >gi|256832506|ref|YP_003161233.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] gi|256686037|gb|ACV08930.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] Length = 212 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R RRM LG+SQ +L +G T Q + ++E+ N V L H VL + Sbjct: 9 LGRLVRARRMELGLSQSELAARVGSTRQWLSRFEQATNDVS---LTHALAVLHA-----L 60 Query: 75 DVSPTVCSDISSEENNV 91 D+S V S +S E + Sbjct: 61 DLSIEVPSPRASTEADA 77 >gi|238761971|ref|ZP_04622944.1| Prophage repressor protein [Yersinia kristensenii ATCC 33638] gi|238699699|gb|EEP92443.1| Prophage repressor protein [Yersinia kristensenii ATCC 33638] Length = 240 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 7/85 (8%) Query: 5 KKIPNPVDINVGKRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 KK P ++ KR++ ++ LG+SQE + LG+ V ++ G+N + + Sbjct: 3 KKPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVTNAA 62 Query: 61 HISEVLESPISFFFDVSPTVCSDIS 85 ++VL PIS F SP++ +++ Sbjct: 63 AFAKVLNEPISSF---SPSLAKELA 84 >gi|50842706|ref|YP_055933.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|50840308|gb|AAT82975.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|332675629|gb|AEE72445.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes 266] Length = 548 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +VG+ IR R GM+Q +L E L + + + E G + + I+E L Sbjct: 41 VDNITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEAL 100 Query: 67 ESPI 70 ESPI Sbjct: 101 ESPI 104 >gi|307947259|ref|ZP_07662593.1| helix-turn-helix domain-containing protein [Roseibium sp. TrichSKD4] gi|307769401|gb|EFO28628.1| helix-turn-helix domain-containing protein [Roseibium sp. TrichSKD4] Length = 181 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SP 69 +D + + RR GM++ +G++ +YE ++R+ SRL H+SE+L P Sbjct: 43 IDAKLADFLTERREKTGMTKGDFAALIGLSRMVYGRYELNISRLTVSRLVHLSELLGFQP 102 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFI 95 + +P + S E N+ + I Sbjct: 103 LEMIHACAPHLFGKTSQEANDRAELI 128 >gi|228949497|ref|ZP_04111751.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810220|gb|EEM56587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 184 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 63 NFF------LEDTNTEE 73 >gi|262282005|ref|ZP_06059774.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262262459|gb|EEY81156.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 190 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R+ GM+Q++L + +G+T Q + YEKG RL+ I++ L+ + F Sbjct: 18 IKSARLKAGMTQKELAKIIGVTKQTIINYEKGTTDPSWERLEDIAKALKVDVDALF 73 >gi|254390105|ref|ZP_05005326.1| hypothetical protein SSCG_02653 [Streptomyces clavuligerus ATCC 27064] gi|294813466|ref|ZP_06772109.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703813|gb|EDY49625.1| hypothetical protein SSCG_02653 [Streptomyces clavuligerus ATCC 27064] gi|294326065|gb|EFG07708.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 466 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 9/64 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG---------VNRVGASRLQHISEV 65 +G+RI+ RR+ LGM Q LG +G + V K EKG +N + A+ H +++ Sbjct: 60 IGRRIKRRRLALGMPQADLGAAVGQSQGWVSKVEKGRIELDRAALINSIAAALHCHPNDL 119 Query: 66 LESP 69 ++ P Sbjct: 120 IDRP 123 >gi|258543250|ref|YP_003188683.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|329114057|ref|ZP_08242821.1| Hypothetical protein APO_0832 [Acetobacter pomorum DM001] gi|256634328|dbj|BAI00304.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256637386|dbj|BAI03355.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256640438|dbj|BAI06400.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256643495|dbj|BAI09450.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646550|dbj|BAI12498.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649603|dbj|BAI15544.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652591|dbj|BAI18525.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655647|dbj|BAI21574.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] gi|326696596|gb|EGE48273.1| Hypothetical protein APO_0832 [Acetobacter pomorum DM001] Length = 122 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 56/99 (56%), Gaps = 10/99 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+RI++ R G++Q+++ + LG++ + +E G R G++R +HI + ++ Sbjct: 12 IDLGQRIKILRKSAGLTQQQVADALGVSRPAIAFWETG--REGSAR-KHIPK-----LAA 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 F+V P + +E+ ++ + TPD + R + +D Sbjct: 64 LFNVDPEIFLTGYVQED--IELVITPDEHDVIRLYRMLD 100 >gi|258593067|emb|CBE69378.1| N-6 DNA methylase [NC10 bacterium 'Dutch sediment'] Length = 640 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 DIN+ K I R LG+SQEKL L ++ + ++EKG R A L I + L+ Sbjct: 8 DINISKLISDLRRRLGISQEKLAAQLRVSLPTINRWEKGKTRPDAMALHVIEQYLQ 63 >gi|183597550|ref|ZP_02959043.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] gi|188023147|gb|EDU61187.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] Length = 132 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R M+ ++LGE L ++ QQ+ +YE GV + L + +L+ PI FF Sbjct: 33 IGRQIYFIRKARCMTGKQLGEQLNVSQQQISRYENGVCHIDVDTLIRLLYILDMPIDQFF 92 >gi|325847281|ref|ZP_08169999.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480912|gb|EGC83961.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 167 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ +R L ++QE L + L I+ Q V K+EKG++ L +SE+ I +F Sbjct: 2 IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKYF 60 >gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] Length = 143 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RR ++G++QE+L E LG++ Q V K+E G + + ++E L+ + Sbjct: 5 IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 64 Query: 75 DVSP 78 P Sbjct: 65 GYDP 68 >gi|212697366|ref|ZP_03305494.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] gi|212675558|gb|EEB35165.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] Length = 199 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ +R L ++QE L + L I+ Q V K+EKG++ L +SE+ I +F Sbjct: 34 IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKYF 92 >gi|22126831|ref|NP_670254.1| phage repressor protein cI [Yersinia pestis KIM 10] gi|45440748|ref|NP_992287.1| putative prophage repressor protein [Yersinia pestis biovar Microtus str. 91001] gi|51595612|ref|YP_069803.1| cI prophage repressor protein [Yersinia pseudotuberculosis IP 32953] gi|108806944|ref|YP_650860.1| putative prophage repressor protein [Yersinia pestis Antiqua] gi|108812905|ref|YP_648672.1| prophage repressor protein [Yersinia pestis Nepal516] gi|145599733|ref|YP_001163809.1| prophage repressor protein [Yersinia pestis Pestoides F] gi|149366781|ref|ZP_01888815.1| putative prophage repressor protein [Yersinia pestis CA88-4125] gi|153947774|ref|YP_001401715.1| phage repressor protein [Yersinia pseudotuberculosis IP 31758] gi|162419046|ref|YP_001605972.1| phage repressor protein [Yersinia pestis Angola] gi|165924786|ref|ZP_02220618.1| phage repressor protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936119|ref|ZP_02224688.1| phage repressor protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009972|ref|ZP_02230870.1| phage repressor protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211761|ref|ZP_02237796.1| phage repressor protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400259|ref|ZP_02305772.1| phage repressor protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419734|ref|ZP_02311487.1| phage repressor protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424151|ref|ZP_02315904.1| phage repressor protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468053|ref|ZP_02332757.1| phage repressor protein [Yersinia pestis FV-1] gi|170025053|ref|YP_001721558.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186894677|ref|YP_001871789.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218928387|ref|YP_002346262.1| putative prophage repressor protein [Yersinia pestis CO92] gi|229841180|ref|ZP_04461339.1| putative prophage repressor protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843284|ref|ZP_04463430.1| putative prophage repressor protein [Yersinia pestis biovar Orientalis str. India 195] gi|229894101|ref|ZP_04509287.1| putative prophage repressor protein [Yersinia pestis Pestoides A] gi|229903334|ref|ZP_04518447.1| putative prophage repressor protein [Yersinia pestis Nepal516] gi|270487141|ref|ZP_06204215.1| peptidase S24-like domain protein [Yersinia pestis KIM D27] gi|294503243|ref|YP_003567305.1| putative prophage repressor protein [Yersinia pestis Z176003] gi|21959861|gb|AAM86505.1|AE013897_1 putative phage repressor protein cI [Yersinia pestis KIM 10] gi|45435606|gb|AAS61164.1| putative prophage repressor protein [Yersinia pestis biovar Microtus str. 91001] gi|51588894|emb|CAH20508.1| putative cI prophage repressor protein [Yersinia pseudotuberculosis IP 32953] gi|108776553|gb|ABG19072.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24 [Yersinia pestis Nepal516] gi|108778857|gb|ABG12915.1| phage lambda repressor protein. Serine peptidase. MEROPS family S24 [Yersinia pestis Antiqua] gi|115346998|emb|CAL19890.1| putative prophage repressor protein [Yersinia pestis CO92] gi|145211429|gb|ABP40836.1| prophage repressor protein [Yersinia pestis Pestoides F] gi|149291155|gb|EDM41230.1| putative prophage repressor protein [Yersinia pestis CA88-4125] gi|152959269|gb|ABS46730.1| phage repressor protein [Yersinia pseudotuberculosis IP 31758] gi|162351861|gb|ABX85809.1| phage repressor protein [Yersinia pestis Angola] gi|165915733|gb|EDR34341.1| phage repressor protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923846|gb|EDR40978.1| phage repressor protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991368|gb|EDR43669.1| phage repressor protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207532|gb|EDR52012.1| phage repressor protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962475|gb|EDR58496.1| phage repressor protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050208|gb|EDR61616.1| phage repressor protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057000|gb|EDR66763.1| phage repressor protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751587|gb|ACA69105.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] gi|186697703|gb|ACC88332.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis PB1/+] gi|229679104|gb|EEO75207.1| putative prophage repressor protein [Yersinia pestis Nepal516] gi|229689631|gb|EEO81692.1| putative prophage repressor protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697546|gb|EEO87593.1| putative prophage repressor protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703986|gb|EEO90999.1| putative prophage repressor protein [Yersinia pestis Pestoides A] gi|262361282|gb|ACY58003.1| putative prophage repressor protein [Yersinia pestis D106004] gi|262365181|gb|ACY61738.1| putative prophage repressor protein [Yersinia pestis D182038] gi|270335645|gb|EFA46422.1| peptidase S24-like domain protein [Yersinia pestis KIM D27] gi|294353702|gb|ADE64043.1| putative prophage repressor protein [Yersinia pestis Z176003] gi|320015925|gb|ADV99496.1| putative prophage repressor protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 240 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 7/85 (8%) Query: 5 KKIPNPVDINVGKRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 KK P ++ KR++ ++ LG+SQE + LG+ V ++ GVN + + Sbjct: 3 KKPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGVNPLNITNAA 62 Query: 61 HISEVLESPISFFFDVSPTVCSDIS 85 ++VL PIS F SP++ +++ Sbjct: 63 AFAKVLNEPISSF---SPSLAKELA 84 >gi|290474343|ref|YP_003467222.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] gi|289173655|emb|CBJ80435.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] Length = 121 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/86 (19%), Positives = 44/86 (51%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +R+R R G+SQ +LG+ + + + ++E+G +R G+ L+ +++VL Sbjct: 1 MAAATEKKFAQRLRELRRQKGLSQSELGKLAELHYTHIGRFERGTSRPGSDTLKRLADVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM 92 + + + + T + E+ ++ Sbjct: 61 DVTSDYLLEGAETDAAKARFEDRELL 86 >gi|229545190|ref|ZP_04433915.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Enterococcus faecalis TX1322] gi|229309735|gb|EEN75722.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Enterococcus faecalis TX1322] Length = 390 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R++ RM GM+ E+L E +G++ Q + KYE+ ++ L + + L P FF+ Sbjct: 11 GQRLKEARMYRGMTLEELKEKIGVSKQMISKYEQNISAPTPEILFSLLQALRFPKEFFY 69 >gi|256422517|ref|YP_003123170.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037425|gb|ACU60969.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 97 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I+ R ++Q++L E +GIT + E GV + L+ I+ L S ++F Sbjct: 1 MNIGKAIQTLRTKKNITQKELAEKIGITQTGLSYIETGVKHPSENSLEKIANALGSSVAF 60 Query: 73 F----FDVSPTVCSDISSEENNVM-DFISTPDGLQLN 104 D+ V D +E + + DF++T L +N Sbjct: 61 IKLASLDLDKDVPQDKRAEFDELFPDFVATMQRLLIN 97 >gi|212711722|ref|ZP_03319850.1| hypothetical protein PROVALCAL_02797 [Providencia alcalifaciens DSM 30120] gi|212685824|gb|EEB45352.1| hypothetical protein PROVALCAL_02797 [Providencia alcalifaciens DSM 30120] Length = 94 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L I+ QQ+ +YE+GVNR+ L ++++L+ Sbjct: 6 PVAYAVGQKIKSLRKSQGYTVFQLARECNISEQQLFRYERGVNRIDIDCLARVTKILDVN 65 Query: 70 ISFFF 74 IS F Sbjct: 66 ISDIF 70 >gi|253579354|ref|ZP_04856624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849452|gb|EES77412.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 298 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I +R LGM+Q++L E LG++ + V K+E+GV S + + +L ++ Sbjct: 4 IKIGKYIAGKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSILGISLNE 63 Query: 73 FF 74 F Sbjct: 64 FL 65 >gi|257791038|ref|YP_003181644.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474935|gb|ACV55255.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 197 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G IR R G++Q +L + LG+T + V K+E+G L +SE L +P+ Sbjct: 5 NTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVETL 64 Query: 74 FD 75 D Sbjct: 65 LD 66 >gi|16129529|ref|NP_416088.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. MG1655] gi|89108412|ref|AP_002192.1| predicted regulator for DicB [Escherichia coli str. K-12 substr. W3110] gi|170020075|ref|YP_001725029.1| transcriptional repressor DicA [Escherichia coli ATCC 8739] gi|170081237|ref|YP_001730557.1| Qin prophage; regulator for DicB [Escherichia coli str. K-12 substr. DH10B] gi|218554136|ref|YP_002387049.1| transcriptional repressor DicA [Escherichia coli IAI1] gi|238900790|ref|YP_002926586.1| Qin prophage; putative regulator for DicB [Escherichia coli BW2952] gi|300939073|ref|ZP_07153765.1| transcriptional repressor DicA [Escherichia coli MS 21-1] gi|307310860|ref|ZP_07590506.1| transcriptional regulator, XRE family [Escherichia coli W] gi|118631|sp|P06966|DICA_ECOLI RecName: Full=HTH-type transcriptional regulator dicA; AltName: Full=Repressor protein of division inhibition gene dicA gi|41278|emb|CAA30349.1| unnamed protein product [Escherichia coli] gi|1742572|dbj|BAA15275.1| predicted regulator for DicB [Escherichia coli str. K12 substr. W3110] gi|1787853|gb|AAC74643.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. MG1655] gi|169755003|gb|ACA77702.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169889072|gb|ACB02779.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. DH10B] gi|218360904|emb|CAQ98476.1| putative transcriptional regulator for DicB; Qin prophage [Escherichia coli IAI1] gi|238863388|gb|ACR65386.1| Qin prophage; predicted regulator for DicB [Escherichia coli BW2952] gi|260449307|gb|ACX39729.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|284921476|emb|CBG34547.1| repressor protein of division inhibition gene [Escherichia coli 042] gi|300456019|gb|EFK19512.1| transcriptional repressor DicA [Escherichia coli MS 21-1] gi|306909038|gb|EFN39534.1| transcriptional regulator, XRE family [Escherichia coli W] gi|315060877|gb|ADT75204.1| Qin prophage; predicted regulator for DicB [Escherichia coli W] gi|315136211|dbj|BAJ43370.1| transcriptional repressor DicA [Escherichia coli DH1] gi|323378556|gb|ADX50824.1| helix-turn-helix domain protein [Escherichia coli KO11] gi|323940355|gb|EGB36547.1| helix-turn-helix protein [Escherichia coli E482] Length = 135 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPI 70 ++ +G+RIR RR L +Q L + L I+ V ++E+G + L +S+VL+ SP Sbjct: 5 NLTIGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERGDSEPTGKNLFALSKVLQCSPT 64 Query: 71 SFFF---DVSPT 79 F D PT Sbjct: 65 WILFGDEDKQPT 76 >gi|326441821|ref|ZP_08216555.1| hypothetical protein SclaA2_12194 [Streptomyces clavuligerus ATCC 27064] Length = 417 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 9/64 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG---------VNRVGASRLQHISEV 65 +G+RI+ RR+ LGM Q LG +G + V K EKG +N + A+ H +++ Sbjct: 11 IGRRIKRRRLALGMPQADLGAAVGQSQGWVSKVEKGRIELDRAALINSIAAALHCHPNDL 70 Query: 66 LESP 69 ++ P Sbjct: 71 IDRP 74 >gi|313837698|gb|EFS75412.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA2] gi|314972637|gb|EFT16734.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA3] gi|328907505|gb|EGG27271.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium sp. P08] Length = 508 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +VG+ IR R GM+Q +L E L + + + E G + + I+E LES Sbjct: 3 NITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALES 62 Query: 69 PI 70 PI Sbjct: 63 PI 64 >gi|332653138|ref|ZP_08418883.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518284|gb|EGJ47887.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 348 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G+ IR +R L ++QE+L + LG++ V K+EKG + L ++ VL + Sbjct: 1 MKLGEIIREKRKALSLTQEQLADYLGVSAPAVHKWEKGTTYPDITTLPALARVLRT 56 >gi|313114406|ref|ZP_07799934.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255] gi|310623277|gb|EFQ06704.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255] Length = 205 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ LRR LG+SQE+L + +G + + K EKG+N + S+++ ++ LE+ ++ + Sbjct: 7 RLHLRRKELGLSQEELAQRMGYRSKSSITKLEKGINDLPQSKVEELAAALETTPAYLLGL 66 Query: 77 SPTVCSDISSEENNVM 92 T C E M Sbjct: 67 D-TPCPPPGFEPLPAM 81 >gi|289425420|ref|ZP_06427197.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] gi|289154398|gb|EFD03086.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] Length = 508 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +VG+ IR R GM+Q +L E L + + + E G + + I+E LES Sbjct: 3 NITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALES 62 Query: 69 PI 70 PI Sbjct: 63 PI 64 >gi|239906602|ref|YP_002953343.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239796468|dbj|BAH75457.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 186 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 18/94 (19%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+R R GM+ + L E G+T V YE G N+ E P+S+ + Sbjct: 11 IAMRLRGLREATGMTAQALAEATGVTAADVAAYETG-NK-------------EIPVSYLY 56 Query: 75 DVSPTVCSDISS----EENNVMDFISTPDGLQLN 104 +V+ +D+++ ++ ++M++ P G L+ Sbjct: 57 EVAKACGADLTALLTGDDAHLMNYSLVPSGQGLS 90 >gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] Length = 140 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RR ++G++QE+L E LG++ Q V K+E G + + ++E L+ + Sbjct: 2 IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 61 Query: 75 DVSP 78 P Sbjct: 62 GYDP 65 >gi|331650592|ref|ZP_08351661.1| putative transcriptional regulator [Escherichia coli M605] gi|323948704|gb|EGB44608.1| helix-turn-helix protein [Escherichia coli H252] gi|331040563|gb|EGI12724.1| putative transcriptional regulator [Escherichia coli M605] Length = 121 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI-----TFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V KR++ RM G+SQEKL + LG+ T + YE G ++ I+E+L+ P Sbjct: 2 VPKRLKEARMEAGLSQEKLSQLLGVAEGINTRSRFSSYEVGRTEPPFKLVKKIAELLDYP 61 Query: 70 ISFFF 74 ++F+ Sbjct: 62 ENYFY 66 >gi|197119614|ref|YP_002140041.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] gi|197088974|gb|ACH40245.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] Length = 110 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 NPV I +G +R R + G SQE+LGE ++++ V + E+G L I+ L Sbjct: 3 NPVAIRQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANAL 62 Query: 67 ESPISFFF 74 PI+ F Sbjct: 63 TVPIAELF 70 >gi|148988905|ref|ZP_01820320.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] gi|147925716|gb|EDK76792.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] Length = 245 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG++I+ R G +Q L E + + Q + KYEKG+ +V + ++++ I F Sbjct: 7 HVGEKIKFFRKENGWTQSVLAEKMSTSKQTISKYEKGIIKVNQDTIFKLADIFGVSIDSF 66 Query: 74 FDVSPTVCSDISS 86 F P++ +I++ Sbjct: 67 F---PSIIEEIAT 76 >gi|282853817|ref|ZP_06263154.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] gi|282583270|gb|EFB88650.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] Length = 508 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +VG+ IR R GM+Q +L E L + + + E G + + I+E LES Sbjct: 3 NITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRITEALES 62 Query: 69 PI 70 PI Sbjct: 63 PI 64 >gi|223986671|ref|ZP_03636661.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] gi|223961357|gb|EEF65879.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] Length = 124 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +G+R+R RM L ++QE L E +G++ + E G N+V I+ L +P Sbjct: 14 LGQRVRRARMKLNLTQEVLAEKVGVSIPTISHIETGTNKVSLELFVSIANALNVTPDELI 73 Query: 74 FDVSPTVCS 82 D P + + Sbjct: 74 MDSVPKLTA 82 >gi|227534216|ref|ZP_03964265.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188150|gb|EEI68217.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 344 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 41/68 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L + +G++ V K+EK V+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELADKIGVSAPAVSKWEKRVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTV 80 S T+ Sbjct: 61 LLTFSVTM 68 >gi|258507112|ref|YP_003169863.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257147039|emb|CAR86012.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259648482|dbj|BAI40644.1| hypothetical protein [Lactobacillus rhamnosus GG] Length = 106 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 41/75 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L S+E+L + + + QQV ++EKG++ +L IS+ LE + Sbjct: 3 IGEQIKDRREALAWSREELAQVVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 75 DVSPTVCSDISSEEN 89 P + I ++N Sbjct: 63 KSDPKLQKTIQIDKN 77 >gi|183599870|ref|ZP_02961363.1| hypothetical protein PROSTU_03389 [Providencia stuartii ATCC 25827] gi|188022143|gb|EDU60183.1| hypothetical protein PROSTU_03389 [Providencia stuartii ATCC 25827] Length = 113 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ R S K+ LGI+ QQ +YE+GVN + L +I +L+ +S FF Sbjct: 14 IGEEIKRLRKASSFSGTKMASELGISQQQYSRYERGVNTISVDALLNILCILDCDVSSFF 73 >gi|317488245|ref|ZP_07946813.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] gi|316912657|gb|EFV34198.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G IR R G++Q +L + LG+T + V K+E+G L +SE L +P+ Sbjct: 5 NTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVETL 64 Query: 74 FD 75 D Sbjct: 65 LD 66 >gi|190570720|ref|YP_001975078.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356992|emb|CAQ54381.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 279 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L ++ L I Sbjct: 169 IGQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYEMAGALSVNIKVLL 228 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + S EEN ++ I Sbjct: 229 PETRE-----SKEENRLLSLI 244 >gi|223933356|ref|ZP_03625344.1| protein of unknown function DUF955 [Streptococcus suis 89/1591] gi|330833524|ref|YP_004402349.1| hypothetical protein SSUST3_1750 [Streptococcus suis ST3] gi|223898006|gb|EEF64379.1| protein of unknown function DUF955 [Streptococcus suis 89/1591] gi|329307747|gb|AEB82163.1| protein of unknown function DUF955 [Streptococcus suis ST3] Length = 385 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 38/71 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R S +L E +G++ Q + KYEK +++ + LQ I L+ P+SF+ Sbjct: 7 GDRLRESRYFRHYSISQLAENVGVSKQMISKYEKNLSKPSSEVLQKIIFELKFPLSFYQT 66 Query: 76 VSPTVCSDISS 86 + +D+ + Sbjct: 67 KDKFITTDLGT 77 >gi|87120613|ref|ZP_01076507.1| hypothetical protein MED121_22687 [Marinomonas sp. MED121] gi|86164256|gb|EAQ65527.1| hypothetical protein MED121_22687 [Marinomonas sp. MED121] Length = 181 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 4/78 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++RL + G SQE+L G++ + +Q+ E+G N+ G L+ ++ V E +S + Sbjct: 4 KQLRLEK---GWSQEELSHLSGLSVRTIQRIERG-NKAGLESLKSLAAVFELRVSDLQSM 59 Query: 77 SPTVCSDISSEENNVMDF 94 P + ++ SE +D Sbjct: 60 DPNLMANSKSESQETVDM 77 >gi|69245861|ref|ZP_00603678.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256853748|ref|ZP_05559113.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257879178|ref|ZP_05658831.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257882003|ref|ZP_05661656.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890008|ref|ZP_05669661.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615576|ref|ZP_05713346.1| XRE family transcriptional regulator [Enterococcus faecium DO] gi|260560175|ref|ZP_05832352.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|294620832|ref|ZP_06700036.1| transcriptional regulator, xre family [Enterococcus faecium U0317] gi|314947724|ref|ZP_07851131.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|68195563|gb|EAN10005.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256710691|gb|EEU25734.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257813406|gb|EEV42164.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817661|gb|EEV44989.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826368|gb|EEV52994.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073742|gb|EEW62067.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291599617|gb|EFF30630.1| transcriptional regulator, xre family [Enterococcus faecium U0317] gi|313645704|gb|EFS10284.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|315030235|gb|EFT42167.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315144772|gb|EFT88788.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315158697|gb|EFU02714.1| helix-turn-helix protein [Enterococcus faecalis TX0312] Length = 111 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 7 AKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 Query: 76 VSPTVCSDISSEENNVMDF--ISTPDGLQ 102 DI EE + + +ST D ++ Sbjct: 67 -----NVDIDYEEEFLALYRSLSTEDAIR 90 >gi|289428534|ref|ZP_06430218.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|295130785|ref|YP_003581448.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] gi|289158228|gb|EFD06447.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|291375959|gb|ADD99813.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] Length = 508 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +VG+ IR R GM+Q +L E L + + + E G + + I+E LES Sbjct: 3 NITPASVGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALES 62 Query: 69 PI 70 PI Sbjct: 63 PI 64 >gi|295113444|emb|CBL32081.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Enterococcus sp. 7L76] Length = 115 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 7 AKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 Query: 76 VSPTVCSDISSEENNVMDF--ISTPDGLQ 102 DI EE + + +ST D ++ Sbjct: 67 -----NVDIDYEEEFLALYRSLSTEDAIR 90 >gi|319650747|ref|ZP_08004886.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] gi|317397604|gb|EFV78303.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] Length = 196 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV+I +G +IR +R L ++ +++ E +G++ V + E+G + L +S + + P Sbjct: 11 PVEI-IGGKIRSKRKTLQLTVDEVAERIGLSQSMVSQIERGKAKPSLDTLWKLSILFDVP 69 Query: 70 ISFFFD 75 +SFFF+ Sbjct: 70 LSFFFE 75 >gi|227432755|ref|ZP_03914721.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351491|gb|EEJ41751.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 256 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R G++Q++ E L I+FQ V +E+ + I E + P+ FF Sbjct: 19 IGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKGYPTTEMMLLIIEKFDLPLDFFI 78 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + PT + + EE ++ F++ Sbjct: 79 -IPPTNSCEDNDEELILLSFLA 99 >gi|212710579|ref|ZP_03318707.1| hypothetical protein PROVALCAL_01642 [Providencia alcalifaciens DSM 30120] gi|212686816|gb|EEB46344.1| hypothetical protein PROVALCAL_01642 [Providencia alcalifaciens DSM 30120] Length = 92 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R+ G+S ++L + ++ QQV +YE GVN++ +L I+ +LE I Sbjct: 11 LGNHLRKARVRKGLSGQELATIIQLSQQQVSRYELGVNKLSLDKLIEIAILLEMDI---H 67 Query: 75 DVSPTVCSDISSEENN 90 +++ + E+NN Sbjct: 68 EITTMIARQFEKEKNN 83 >gi|322373520|ref|ZP_08048056.1| putative repressor protein [Streptococcus sp. C150] gi|321278562|gb|EFX55631.1| putative repressor protein [Streptococcus sp. C150] Length = 227 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/80 (21%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + LGI++Q +E+GV ++ + ++L P +F ++ Sbjct: 5 EKLKARRKELKITQKDIADQLGISYQAYSAWERGVKEPSKEKVNRLEQILRVPKGYFTEI 64 Query: 77 SPTVCSDISSE--ENNVMDF 94 ++ S +N V+++ Sbjct: 65 EIARLYNVLSNKGQNQVLEY 84 >gi|213019727|ref|ZP_03335532.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994768|gb|EEB55411.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 303 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L ++ L I Sbjct: 169 IGQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYEMAGALSVNIKVLL 228 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + S EEN ++ I Sbjct: 229 PETRE-----SKEENRLLSLI 244 >gi|228961481|ref|ZP_04123092.1| Prophage Lp3 protein 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798195|gb|EEM45197.1| Prophage Lp3 protein 2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 206 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KRI++ R G+SQ++L E L +T Q V YEKG + L IS +L P+ + + Sbjct: 2 KRIKIARQRKGVSQKELAEKLNMTQQAVSYYEKGSRVPDENILLEISRILTVPVEYLTE 60 >gi|226327970|ref|ZP_03803488.1| hypothetical protein PROPEN_01852 [Proteus penneri ATCC 35198] gi|225203674|gb|EEG86028.1| hypothetical protein PROPEN_01852 [Proteus penneri ATCC 35198] Length = 100 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + EVL Sbjct: 6 PVAYAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLEVLGVN 65 Query: 70 ISFFFD 75 I FF+ Sbjct: 66 IGSFFE 71 >gi|326800444|ref|YP_004318263.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326551208|gb|ADZ79593.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 112 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK+IRL R G SQE + + L I+ K E G+ + SRLQ I+++ + + Sbjct: 4 LGKKIRLLRHQNGWSQEDVAKRLDISIPAFSKIETGITDINLSRLQQIAKLFDMTV 59 >gi|255038320|ref|YP_003088941.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254951076|gb|ACT95776.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 124 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 40/71 (56%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V N+ ++IR R+ G+SQE + + LG++ E+G + SRL++++++L+ P+ Sbjct: 3 VTSNLSEKIRQIRLQKGLSQENMADMLGLSTTAYGDIERGRTELSVSRLENVAKLLDVPL 62 Query: 71 SFFFDVSPTVC 81 + ++ Sbjct: 63 PELLGIDSSMS 73 >gi|268593156|ref|ZP_06127377.1| transcriptional regulator, XRE family [Providencia rettgeri DSM 1131] gi|291311202|gb|EFE51655.1| transcriptional regulator, XRE family [Providencia rettgeri DSM 1131] Length = 99 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + +VL+ Sbjct: 8 PVACAVGQKIKALRRAQGFTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVRVLKVLDVN 67 Query: 70 ISFFF 74 + FF Sbjct: 68 MGEFF 72 >gi|224536634|ref|ZP_03677173.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus DSM 14838] gi|224521725|gb|EEF90830.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus DSM 14838] Length = 130 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 VG+R++L RM ++QE++GE L ++ K E G + +RL I+EV+ S I F Sbjct: 9 VGQRLQLLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVMNMSAIDLF 68 Query: 74 --------FDVSPTVCSDI 84 F+ S T+ + I Sbjct: 69 RKIDGNSYFNNSSTIGTSI 87 >gi|307707493|ref|ZP_07643975.1| transcriptional activator [Streptococcus mitis NCTC 12261] gi|307616445|gb|EFN95636.1| transcriptional activator [Streptococcus mitis NCTC 12261] Length = 287 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ R++R LG+SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRVKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|326772583|ref|ZP_08231867.1| DNA-binding protein [Actinomyces viscosus C505] gi|326637215|gb|EGE38117.1| DNA-binding protein [Actinomyces viscosus C505] Length = 103 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 P+ +G R++ R+ G+SQE L GI+ QK+EKG +R G Sbjct: 28 PIARQLGLRLQRARIAKGLSQEALAHAAGISSYTYQKFEKGESRPG 73 >gi|319939951|ref|ZP_08014306.1| serine hydroxymethyltransferase [Streptococcus anginosus 1_2_62CV] gi|319810962|gb|EFW07281.1| serine hydroxymethyltransferase [Streptococcus anginosus 1_2_62CV] Length = 290 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 3/64 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R++ +R+ LG+SQ++L E G+ Q Q+ + EKG G+ L +S+ + P+++F Sbjct: 5 LATRLKSKRLELGVSQKELAE--GVCEQGQISRMEKGKYMPGSDLLYSLSKKMNVPMNYF 62 Query: 74 FDVS 77 FD S Sbjct: 63 FDDS 66 >gi|256617057|ref|ZP_05473903.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256596584|gb|EEU15760.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] Length = 111 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 7 AKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 Query: 76 VSPTVCSDISSEENNVMDF--ISTPDGLQ 102 DI EE + + +ST D ++ Sbjct: 67 -----NVDIDYEEEFLAFYRSLSTEDAIR 90 >gi|188025844|ref|ZP_02960023.2| hypothetical protein PROSTU_01924 [Providencia stuartii ATCC 25827] gi|188020707|gb|EDU58747.1| hypothetical protein PROSTU_01924 [Providencia stuartii ATCC 25827] Length = 116 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHI 62 N K N + VG ++ R+ G++ +L + GI + QQ+ +YE+G+NR+G L Sbjct: 9 NMKSTNSISKLVGFHLKKLRIQSGLTAFQLAKQAGIKSEQQLYRYERGINRIGIDELISS 68 Query: 63 SEVLESPISFFFDV 76 +VL+ I FF++ Sbjct: 69 LQVLDIDIGEFFEL 82 >gi|126736502|ref|ZP_01752243.1| putative transcriptional regulator [Roseobacter sp. CCS2] gi|126714040|gb|EBA10910.1| putative transcriptional regulator [Roseobacter sp. CCS2] Length = 143 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + +GKR++ R +G++QE+ L + + + E G VGA ++ ++ + E Sbjct: 32 DPEALQLGKRLKQAREYIGVTQEEAATHLKVRRSAISEMEAGKRGVGALEMKSLASLYER 91 Query: 69 PISFFFDVSPT-VCSDISSEENNVMDF 94 P ++F + T V D++ V D Sbjct: 92 PTAWFTGETDTPVPEDVTFLARTVSDL 118 >gi|307711376|ref|ZP_07647794.1| peptidase S24-like family protein [Streptococcus mitis SK321] gi|307616794|gb|EFN95976.1| peptidase S24-like family protein [Streptococcus mitis SK321] Length = 228 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q ++ E LGI+FQ +E+GV ++ + +L+ P +F Sbjct: 5 EKLKARRKELKLTQREIAEQLGISFQAYSAWERGVKEPSKEKVVQLENILKVPKGYF 61 >gi|255316610|ref|ZP_05358193.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 116 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 21/126 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R G SQE L + G+ + + E+G ++ + I+ LE P+ F Sbjct: 10 IGKRIRNYRKRAGYSQEALAKKAGLFHAYLGQIERGESKASLRSIFKIANALEMPLEILF 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIELVRSIVSSEKK 132 + N++ P+ L Y + ID + K ++ II+L++ I+ + Sbjct: 70 E--------------NIIQNEKDPETLSSEAYEL-IDSLTSKEQKAIIKLLKEII----E 110 Query: 133 YRTIEE 138 YR +EE Sbjct: 111 YRKLEE 116 >gi|218780466|ref|YP_002431784.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761850|gb|ACL04316.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R+ ++Q +L E +G++ + + + E+GV L ++E L S + FF Sbjct: 8 IGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTFPSVKTLARVAEALGSSLKQFF 67 Query: 75 D 75 D Sbjct: 68 D 68 >gi|148263396|ref|YP_001230102.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396896|gb|ABQ25529.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 174 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G R++ RM ++Q++L + G+ + + K E+G L ISE L Sbjct: 27 LKLEIGSRLKRLRMERSLTQKELAVRVSGGLDYTYIGKIERGEQLPSLKILLKISEALSV 86 Query: 69 PI-SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY--FIQIDDVKVRQKIIELV 123 P+ SFF D + SDISS E + +S G +L R + DD+ + +II+++ Sbjct: 87 PVASFFQDEAVAAVSDISSSELRYL--VSEETGRELVRALRLVHKDDLPLLIEIIQVL 142 >gi|21244014|ref|NP_643596.1| hypothetical protein XAC3288 [Xanthomonas axonopodis pv. citri str. 306] gi|21109631|gb|AAM38132.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 112 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 5/67 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R+R RM +G +Q +L E +G+ +V +YE G + + + +++ L+ P+ Sbjct: 12 GTRLRNARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDPATAEALAKALDLPV 71 Query: 71 SFFFDVS 77 ++F S Sbjct: 72 AYFHATS 78 >gi|310830222|ref|YP_003965322.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753128|gb|ADO44271.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 197 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISF 72 +VG +R RR+ LG++Q + + G+T + + E+G+ S L IS+VL SP+ Sbjct: 7 SVGDALRARRIALGITQRVVADQAGLTTGFISQVERGLTAPSLSSLHAISKVLGLSPLQ- 65 Query: 73 FFDVSP 78 F D P Sbjct: 66 FIDTPP 71 >gi|295102328|emb|CBK99873.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 208 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D ++ RIR RR L +SQE+L +G + + K EKG+N + ++L+ ++ L++ Sbjct: 3 DTDLSSRIRQRREQLSLSQEELAARMGYRSKSSITKLEKGINDLPRAKLEELAAALDTTP 62 Query: 71 SFFFDVSPTVC 81 ++ ++ C Sbjct: 63 AWLMGLADLPC 73 >gi|291537380|emb|CBL10492.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 110 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D+ G RI+ R + ++QE L E + ++ + + EKG+ + + L +S VL Sbjct: 2 NPIDL--GVRIKQCRTMRKLTQENLAERIDVSSHYIYEIEKGLKNMSLNTLIDLSTVLNV 59 Query: 69 PISF--FFDVSPTVCSDISSEEN 89 + F S T C+D ++N Sbjct: 60 STDYLLFGTTSDTPCTDTIPQDN 82 >gi|268593023|ref|ZP_06127244.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311286|gb|EFE51739.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 132 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 18/109 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL--------------- 59 VG + R G+S +LG+ LG++ QQ+ +YE GV R+ S L Sbjct: 24 VGNELAYMRKNKGISGAELGKLLGMSQQQISRYENGVTRLDLSTLLSFLLRLDTTLDDFF 83 Query: 60 QHISEVLE--SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +HISE L+ P+ + S I+S E + D++ L + Y Sbjct: 84 RHISERLKMYHPM-LYIKYHFIFSSGITSREISPDDYLKAASTLTMESY 131 >gi|317050739|ref|YP_004111855.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945823|gb|ADU65299.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 221 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS-PTVCSDISS 86 +S EKLGE +GI V++ E G ++ L+ ++ LE I+ FD P DI + Sbjct: 20 LSSEKLGEAVGIEGSYVRQIETGKRKLNLIILERLASALEVNIAALFDPQLPVEKKDIPA 79 Query: 87 EENNVMDFISTP 98 EE +D I+ P Sbjct: 80 EER--LDLINLP 89 >gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] Length = 183 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 35/58 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I +G+ I RR +GM+QE+L +G++ Q V K+E G + RL + +VL++ + Sbjct: 10 IRLGQEILRRRKAMGMTQEELASRMGVSRQSVAKWETGQSSPDIDRLSLLRDVLQTSL 67 >gi|310828390|ref|YP_003960747.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308740124|gb|ADO37784.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 178 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++ +SQ L + L + + VQKYE G + + + I++VL++ ++ Sbjct: 7 IGARIKESRKLMKLSQTDLADALNKSLRTVQKYESGEIELNIATINEIAKVLKTSPAYLL 66 >gi|289168188|ref|YP_003446457.1| transcriptional regulator [Streptococcus mitis B6] gi|288907755|emb|CBJ22592.1| transcriptional regulator [Streptococcus mitis B6] Length = 287 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ R++R LG+SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LSEKFRVKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDIS 85 F+ V S++S Sbjct: 62 FNEQIEVKSNLS 73 >gi|229541873|ref|ZP_04430933.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326293|gb|EEN91968.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 180 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K+IR R+ G++ ++L E +T + + E+G + + + L+ I++ L IS+ Sbjct: 2 IEIHKKIRELRLQKGLTLKQLSEKTNLTIGFLSQVERGTSSLAITSLKKIADSLGVEISY 61 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 FF+ PT+ + + ++ N F Sbjct: 62 FFN--PTITAHYAVKKENQKTF 81 >gi|229065719|ref|ZP_04200943.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228715537|gb|EEL67338.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 186 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I + R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINVGQKIMVFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 65 NFF------LEDTNTEE 75 >gi|332360443|gb|EGJ38254.1| cro/CI family zinc-binding transcriptional regulator [Streptococcus sanguinis SK355] Length = 377 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ G+++++L E GI+ Q + YE G GAS+L I L+ P ++F Sbjct: 15 RIARGLTKKELAERTGISRQMISNYELGKTHPGASKLMTIVAELDFPYTYF 65 >gi|322375254|ref|ZP_08049767.1| zinc-binding transcriptional regulator, Cro/CI family [Streptococcus sp. C300] gi|321279517|gb|EFX56557.1| zinc-binding transcriptional regulator, Cro/CI family [Streptococcus sp. C300] Length = 377 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ G+++++L E GI+ Q + YE G GAS+L I L+ P ++F Sbjct: 15 RIARGLTKKELAERTGISRQMISNYELGKTHPGASKLMTIVAELDFPYAYF 65 >gi|329846732|ref|ZP_08262005.1| hypothetical protein ABI_00390 [Asticcacaulis biprosthecum C19] gi|328844239|gb|EGF93807.1| hypothetical protein ABI_00390 [Asticcacaulis biprosthecum C19] Length = 61 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +L +S + L L + + +E+G+ R+ AS L I +L+ PI FFFD Sbjct: 1 MLKLSADALASRLFLPVAVIYAFEEGMVRIRASTLHDIGNILKVPIRFFFD 51 >gi|315149857|gb|EFT93873.1| helix-turn-helix protein [Enterococcus faecalis TX0012] Length = 273 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLES 68 + VG+R++LRR L +S +K+ + LG++ + +YEKG + ++ RL I+++L++ Sbjct: 32 MKVGERMKLRRKELNISADKIADELGVSRSTIFRYEKGDIEKLPTERLITIAKILKT 88 >gi|325104086|ref|YP_004273740.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324972934|gb|ADY51918.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 113 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK+IRL R G SQE + + L I+ K E G+ V SRL+ IS + + + Sbjct: 4 LGKKIRLLRHQRGWSQEDVSKQLDISIPAFSKIETGITDVNLSRLEQISALFDMSV 59 >gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496398|gb|EFM65972.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 128 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 24 AKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 83 Query: 76 VSPTVCSDISSEENNVMDF--ISTPDGLQ 102 DI EE + + +ST D ++ Sbjct: 84 -----NVDIDYEEEFLALYRSLSTEDAIR 107 >gi|222109211|ref|YP_002551476.1| hypothetical protein Avi_9645 [Agrobacterium vitis S4] gi|221738485|gb|ACM39350.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 163 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/102 (18%), Positives = 49/102 (48%), Gaps = 10/102 (9%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVSPTVCSDIS 85 G+++ + LG++ +YE+ +++ +RL H+ E+L SP+ ++ +P + Sbjct: 60 GLTRAEFAPLLGLSVPVYSRYERAFSKIHVTRLLHVCELLGLSPVEMLYEAAPHLWGSTD 119 Query: 86 SEENNVMDFIS---------TPDGLQLNRYFIQIDDVKVRQK 118 E + ++ T D +++ + Q+++ +V K Sbjct: 120 EEAEDRFRLVALVLKLPHRTTRDLMRMVEHLGQMENGRVATK 161 >gi|312952949|ref|ZP_07771805.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310629090|gb|EFQ12373.1| helix-turn-helix protein [Enterococcus faecalis TX0102] Length = 109 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K I+ +R LG +Q++L E + T Q V ++E V L +S L +P+S F D Sbjct: 7 AKVIKEKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 >gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 107 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R GM+QE+L E LGI + + + E G + RL I+ V+ +P+ F Sbjct: 8 LGLRIRELRKRAGMTQEQLAELLGIDQKHMSRIELGKSYPSLDRLLKIAVVVNAPLPNLF 67 Query: 75 DVSP-TVCSDISSEENNVMDFISTPD 99 + +D+ + N++ + D Sbjct: 68 EFGHMNTAADLQQQVVNIVMQLGPKD 93 >gi|326203738|ref|ZP_08193601.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986178|gb|EGD47011.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 169 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE+L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQEELAIKLNVVRQTISKWEQGLSVPDSDILISISEVLETPVS 58 >gi|116495520|ref|YP_807254.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|191638999|ref|YP_001988165.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|227533926|ref|ZP_03963975.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239629921|ref|ZP_04672952.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067057|ref|YP_003789080.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116105670|gb|ABJ70812.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|190713301|emb|CAQ67307.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|227188441|gb|EEI68508.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527533|gb|EEQ66534.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439464|gb|ADK19230.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] gi|327383053|gb|AEA54529.1| DNA-binding protein [Lactobacillus casei LC2W] gi|327386239|gb|AEA57713.1| DNA-binding protein [Lactobacillus casei BD-II] Length = 103 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 N+GK + +R L ++ EKL E G++ + + E+G VN + +L I+ L + Sbjct: 4 NIGKLVHQQRRSLNLTIEKLAERSGVSISLISRMERGDVNNISIKKLTDIARALNMQVGD 63 Query: 73 FFDVSPTVCSDISS 86 FF ++P + SDIS+ Sbjct: 64 FF-IAPEM-SDIST 75 >gi|191638861|ref|YP_001988027.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190713163|emb|CAQ67169.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327382909|gb|AEA54385.1| hypothetical protein LC2W_2053 [Lactobacillus casei LC2W] gi|327386093|gb|AEA57567.1| hypothetical protein LCBD_2071 [Lactobacillus casei BD-II] Length = 344 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 40/68 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L +G++ V +EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSIWEKGVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTV 80 S T+ Sbjct: 61 LLTFSVTM 68 >gi|187778336|ref|ZP_02994809.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] gi|187771961|gb|EDU35763.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] Length = 111 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R++ R GM+QE+LG+ L IT Q V YEKG N L I+++ + + Sbjct: 21 GDRLKELREEKGMTQEQLGKLLNITKQAVYSYEKGDNEPTIDALVKIADIFNVSLDYLL 79 >gi|325104005|ref|YP_004273659.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324972853|gb|ADY51837.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 75 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVGKR+ R ++QEKL E G+ +Q+ + E+ V S ++ I++ L+ +S Sbjct: 12 INVGKRLMEIREAKNITQEKLQELTGLDIRQIGRIERAETNVSISSIKLIADCLKISVSE 71 Query: 73 FFDV 76 DV Sbjct: 72 LLDV 75 >gi|182416964|ref|ZP_02625290.2| putative phage repressor [Clostridium butyricum 5521] gi|237666135|ref|ZP_04526122.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379140|gb|EDT76642.1| putative phage repressor [Clostridium butyricum 5521] gi|237658225|gb|EEP55778.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 198 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 12/124 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLE-SPISFF-F 74 RI+ RR L +S E L + G +Q+YE G +NR+ R + +++ LE P + Sbjct: 13 RIKKRREELNLSYEDLSKRTGFGSSTLQRYETGAINRIPIDRFEELAKGLEIEPYKLMGW 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D + D +E + D + L+ F+++++ R+KI+E + I+S +K + Sbjct: 73 DEDYLLSQDRKNE--------TDGDIVDLHNAFLKLNETG-RKKILEYIFDILSIDKYVQ 123 Query: 135 TIEE 138 T ++ Sbjct: 124 TCDQ 127 >gi|323126871|gb|ADX24168.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 30/129 (23%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++L+R G SQ + E +G++ Q K+EKG+++ L + + + P +F Sbjct: 5 EKLKLKRTEHGFSQLSIAERIGVSKQAYSKWEKGISQPTNENLIKLENLFKVPAGYF--- 61 Query: 77 SPTVCSDISSEEN--NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 +EE N+ +++P+ + K I VRS+VSS+ K Sbjct: 62 ---------NEEEILNLYHQLNSPN----------------QSKAITYVRSLVSSQNKVS 96 Query: 135 TIEEECMVE 143 + +E + E Sbjct: 97 HLIQETLYE 105 >gi|254197120|ref|ZP_04903543.1| irep [Burkholderia pseudomallei S13] gi|169653862|gb|EDS86555.1| irep [Burkholderia pseudomallei S13] Length = 106 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQEKLG G+ ++ +YE+G + + + I++ L+ PISFF Sbjct: 7 RLKQARKAAGLSQEKLGVLAGVDEMSASARMNQYERGKHEPDFAMVNRIAQALQLPISFF 66 Query: 74 F 74 + Sbjct: 67 Y 67 >gi|86148029|ref|ZP_01066331.1| transcriptional regulator, putative [Vibrio sp. MED222] gi|85834162|gb|EAQ52318.1| transcriptional regulator, putative [Vibrio sp. MED222] Length = 103 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISE 64 NP+ + R++ R +SQ+ LG C+G+ ++ +YEKG + L+ +++ Sbjct: 5 NPIPV----RLKEARKKAKLSQKSLGVCIGMDESSASPRMNQYEKGKHTPDVRTLKLLAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEE 88 L P+SFFF C D SS E Sbjct: 61 ELGVPLSFFF------CEDESSAE 78 >gi|315143624|gb|EFT87640.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX2141] Length = 68 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---ISFFF 74 R++ R+ G SQE+L + LG T K E G +G L I+ LE P IS FF Sbjct: 7 RLKAERIAKGYSQEELAKKLGWTRSMYTKRENGAVSLGVDELAKIATALEMPESRISIFF 66 Query: 75 D 75 + Sbjct: 67 N 67 >gi|253583791|ref|ZP_04860989.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251834363|gb|EES62926.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 168 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVSPTVCSDIS 85 GMSQEKL + LG++ Q V K+E G + ++ +S + E + DVS C DI Sbjct: 15 GMSQEKLAQLLGVSKQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLKDVSEEKCIDIL 74 Query: 86 SEEN 89 +E Sbjct: 75 RKEK 78 >gi|160887303|ref|ZP_02068306.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483] gi|237713191|ref|ZP_04543672.1| transcriptional regulator [Bacteroides sp. D1] gi|262409416|ref|ZP_06085958.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294647377|ref|ZP_06724970.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294809001|ref|ZP_06767723.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|156107714|gb|EDO09459.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483] gi|229446849|gb|EEO52640.1| transcriptional regulator [Bacteroides sp. D1] gi|262352628|gb|EEZ01726.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292637336|gb|EFF55761.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294443726|gb|EFG12471.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|295087084|emb|CBK68607.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 132 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +++GK+I R + GM+Q +LG+ LGIT Q V K E+ ++ RL+ I+ L Sbjct: 12 LHLGKKIERVRRLRGMTQTELGQLLGITKQAVSKMEQ-TEKIDDERLEKIASAL 64 >gi|332531289|ref|ZP_08407202.1| helix-turn-helix domain protein [Hylemonella gracilis ATCC 19624] gi|332039396|gb|EGI75809.1| helix-turn-helix domain protein [Hylemonella gracilis ATCC 19624] Length = 143 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 29/40 (72%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 LG+S ++G+ L ++ Q V +EKG+++ AS+L+ I+EV Sbjct: 88 LGLSAAEMGKILNVSLQTVYHWEKGISKPRASQLERIAEV 127 >gi|257440458|ref|ZP_05616213.1| LexA repressor [Faecalibacterium prausnitzii A2-165] gi|257197080|gb|EEU95364.1| LexA repressor [Faecalibacterium prausnitzii A2-165] Length = 206 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +RI RR+ LG+SQE+L + +G + + K EKGVN + S+++ + LE+ ++ Sbjct: 6 RRILQRRLELGLSQEELAQRMGYRSKSSITKLEKGVNDIPQSKVEEFAAALETTPAWLMG 65 Query: 76 VSPTV 80 + T Sbjct: 66 LENTA 70 >gi|269928755|ref|YP_003321076.1| hypothetical protein Sthe_2842 [Sphaerobacter thermophilus DSM 20745] gi|269788112|gb|ACZ40254.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM 20745] Length = 372 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 11/79 (13%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP + + ++ R G+S L E +G++ + + YE+G + G L I++ L Sbjct: 11 NPTRLTLARKRR------GLSISALAERVGLSRRSIFNYERGRSVPGDHTLATIAQTLGF 64 Query: 69 PISFFF-----DVSPTVCS 82 PI+FFF ++SP S Sbjct: 65 PITFFFGNDIEELSPDAVS 83 >gi|168765271|ref|ZP_02790278.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|168798579|ref|ZP_02823586.1| repressor protein CI [Escherichia coli O157:H7 str. EC508] gi|217327029|ref|ZP_03443112.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588] gi|189364926|gb|EDU83342.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|189378869|gb|EDU97285.1| repressor protein CI [Escherichia coli O157:H7 str. EC508] gi|217319396|gb|EEC27821.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588] gi|315274298|gb|ADU03706.1| repressor protein CI [Enterobacteria phage VT2phi_272] gi|326340128|gb|EGD63932.1| repressor protein CI [Escherichia coli O157:H7 str. 1125] Length = 237 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%) Query: 5 KKIPNPVDINVGKRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 KK P + KR++ ++ LG+SQE L LG+T V + G+N + AS Sbjct: 5 KKPLTPEQLEDAKRLKSIFNAKKKELGLSQESLAYELGVTQSAVNQLMAGINAINASHAA 64 Query: 61 HISEVLESPISFFFDVSPTVCSDIS 85 ++++L + D SP++ I+ Sbjct: 65 QLAKILNVKVG---DFSPSLAKSIA 86 >gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI R LG++Q +LGE +G++ Q + KYE G + L +S+ PI + Sbjct: 11 RIAELRKKLGLTQTRLGEEIGVSQQTISKYENGDENIPGDMLLALSKFFRVPIDYILRKE 70 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNR 105 ++ +M+ D Q NR Sbjct: 71 EEQQQREQNDRKEIMELYRDMD--QYNR 96 >gi|318057356|ref|ZP_07976079.1| hypothetical protein SSA3_05416 [Streptomyces sp. SA3_actG] gi|318075878|ref|ZP_07983210.1| hypothetical protein SSA3_03995 [Streptomyces sp. SA3_actF] Length = 388 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R + G+++ ++ + +G++ V +YE G NR + +++VL+ PI FF Sbjct: 29 RLTQARRLAGLTKREVADGIGVSAAAVGQYEAGTNRPRPELIPRLADVLDVPIQFFVAGR 88 Query: 78 P 78 P Sbjct: 89 P 89 >gi|307708176|ref|ZP_07644643.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615622|gb|EFN94828.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 228 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 34/57 (59%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ P +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVFQLENILKVPKGYF 61 >gi|317057522|ref|YP_004105989.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449791|gb|ADU23355.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 135 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 15/124 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++ R +G SQE L + L ++ Q V K+E G + A ++ IS F Sbjct: 1 MNIGDKLLFLRNRVGCSQETLADALDVSRQTVSKWELGQSLPDAEKIVAISNYFNVTTDF 60 Query: 73 FF-DVSPTVCSDISSEENN---VMDFISTPDGL-QLNRYFIQID-----DVKVRQKIIEL 122 D SP + E+N V++F ++ L Q++R + I D + R ++ E+ Sbjct: 61 LLRDTSP-----VKIEKNLDRIVIEFANSAADLDQISRALVDIARDGIIDEEERLRLFEM 115 Query: 123 VRSI 126 V+++ Sbjct: 116 VKTV 119 >gi|299136447|ref|ZP_07029630.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298600962|gb|EFI57117.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 137 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 33/67 (49%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P IN+G IR R+ GMSQ + + G+ + + E G LQ I+ L+ Sbjct: 16 PGPAPINIGMTIRDFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAAALD 75 Query: 68 SPISFFF 74 P+S FF Sbjct: 76 LPLSQFF 82 >gi|261344510|ref|ZP_05972154.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567420|gb|EFB72955.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 79 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL-QHIS 63 P+ VG RI R I G S + +GI+ QQ +YE+G+NR+ RL Q++S Sbjct: 6 PISKLVGDRILYYRKIQGASLLDVSIVIGISEQQQSRYERGINRISLDRLAQYVS 60 >gi|271502279|ref|YP_003335305.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270345834|gb|ACZ78599.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 87 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 8/81 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R++ G+SQE+LG GI ++ +YE+G++ + ++ VL P + Sbjct: 4 HRLKAARLMAGLSQERLGILAGIDEATASARMNQYERGIHTPDFELARRLAAVLHVPACY 63 Query: 73 FF----DVSPTVCSDISSEEN 89 F+ D++ + S ++EN Sbjct: 64 FYTVEDDLAEMILSFYDTKEN 84 >gi|82777173|ref|YP_403522.1| repressor protein CI [Shigella dysenteriae Sd197] gi|309788320|ref|ZP_07682924.1| repressor protein CI [Shigella dysenteriae 1617] gi|81241321|gb|ABB62031.1| repressor protein CI [Shigella dysenteriae Sd197] gi|308923702|gb|EFP69205.1| repressor protein CI [Shigella dysenteriae 1617] Length = 237 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%) Query: 5 KKIPNPVDINVGKRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 KK P + KR++ ++ LG+SQE L LG+T V + G+N + AS Sbjct: 5 KKPLTPEQLEDAKRLKSIFNAKKKELGLSQESLAYELGVTQSAVSQLMAGINAINASHAA 64 Query: 61 HISEVLESPISFFFDVSPTVCSDIS 85 ++++L + D SP++ I+ Sbjct: 65 QLAKILNVKVG---DFSPSLAKSIA 86 >gi|291286470|ref|YP_003503286.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290883630|gb|ADD67330.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 149 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 11/95 (11%) Query: 20 RLRRMI--LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--- 74 RL+ +I + Q +L + +G+ + + Y KG + L+ ++E LE+PI +FF Sbjct: 7 RLKALIDVKNIKQTELADLIGVNSKSINTYVKGRSEPNLDLLKKMAEELETPIEYFFGYI 66 Query: 75 DVSPTVCSDISSEEN---NVMDFISTP---DGLQL 103 + + +SSE+ N + I+TP D LQL Sbjct: 67 SLDEAINGGLSSEKALLINTIRNINTPIPNDTLQL 101 >gi|153952958|ref|YP_001393723.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146345839|gb|EDK32375.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 179 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R G++ + + E G++ + ++E+G+ + L I+ VL I++ Sbjct: 1 MNIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNVRINY 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|329117294|ref|ZP_08246011.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907699|gb|EGE54613.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 112 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRIRL R+ GM+QE+L E + V K E + L+ + + LE FF Sbjct: 10 ISKRIRLLRLERGMTQEQLEEKADLGTNYVYKLENQSTNIKVKTLEKVMKALEVDFEGFF 69 Query: 75 DVS 77 D+S Sbjct: 70 DIS 72 >gi|251789530|ref|YP_003004251.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538151|gb|ACT06772.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P +G RI L R L ++Q++L E LGI Q + YE G +V AS L ++ +L Sbjct: 18 PFFKELGARIALARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQLATIL 74 >gi|254444938|ref|ZP_05058414.1| Helix-turn-helix domain protein [Verrucomicrobiae bacterium DG1235] gi|198259246|gb|EDY83554.1| Helix-turn-helix domain protein [Verrucomicrobiae bacterium DG1235] Length = 369 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 18 RIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R+ R +LG+S + L L IT Q + KYEKG + L +S+VL+ PI F Sbjct: 12 RLNQARRLLGLSLDDLVASLAEAGLSITKQSLSKYEKGEIAPSSQSLAALSKVLKKPIDF 71 Query: 73 FFDVSPTVCSDI 84 FF DI Sbjct: 72 FFQKGAIKLVDI 83 >gi|29826758|ref|NP_821392.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29603854|dbj|BAC67927.1| putative transcriptional regulatory protein [Streptomyces avermitilis MA-4680] Length = 135 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 36/66 (54%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + +G+R++ R L MSQ+ + + GI + E+G RV + L+ ++ + Sbjct: 12 DPELVRLGERLKKTRDYLNMSQQFVSDSTGIPRSAISDIERGERRVDSLELKKLARLYRQ 71 Query: 69 PISFFF 74 P+++F Sbjct: 72 PVAYFL 77 >gi|311031583|ref|ZP_07709673.1| transcriptional regulator [Bacillus sp. m3-13] Length = 295 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I++ R L +SQ +L E GI Q Q+ K EKG A+ L +I+E L I++F Sbjct: 6 IGKEIKVLRSALNLSQAELSE--GICTQSQISKIEKGEVFPLANTLYYIAERLGVDINYF 63 Query: 74 FDVS 77 +D++ Sbjct: 64 YDLA 67 >gi|313897846|ref|ZP_07831387.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957381|gb|EFR39008.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 223 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI--------SEVL 66 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +E+L Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P + I E+ DF + D L N +F ++ K + I L+R I Sbjct: 71 SGEWKYIDHTEPYIMDIIKREQ----DFNVSLDYLSENEFFDDENEYKFYMETI-LIRYI 125 >gi|257453722|ref|ZP_05619008.1| transcriptional regulator, XRE family [Enhydrobacter aerosaccus SK60] gi|257448905|gb|EEV23862.1| transcriptional regulator, XRE family [Enhydrobacter aerosaccus SK60] Length = 106 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R + R ++QE+LG +G + ++ +YEKG++ L I+E+L+ P +FF Sbjct: 10 RFKQARKAKKLTQEQLGIAIGLDEFVASTRINRYEKGIHLPDLQTLARIAEILDVPPAFF 69 Query: 74 F 74 F Sbjct: 70 F 70 >gi|228918176|ref|ZP_04081680.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841456|gb|EEM86595.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 184 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKNAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 63 NFF------LEDTNTEE 73 >gi|254382948|ref|ZP_04998303.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194341848|gb|EDX22814.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 411 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 9/66 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG---------VNRVGASRLQHISEV 65 +G+R+R +R+ +GM+Q L LG T V K EKG +N V A+ H + + Sbjct: 11 IGQRVRRQRLSVGMTQADLAAALGRTQGWVSKLEKGRIELDRAGLINAVAAALHCHPNTL 70 Query: 66 LESPIS 71 +E P + Sbjct: 71 IERPYT 76 >gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] Length = 224 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++Q +LG LG++ + YEKG ++G L ++ L P+ +F Sbjct: 5 IGARIKKAREEKYLTQAELGVKLGVSATAINYYEKGKRKIGIDDLYRMANALGKPLEYFL 64 >gi|119488949|ref|ZP_01621884.1| hypothetical protein L8106_19346 [Lyngbya sp. PCC 8106] gi|119454905|gb|EAW36048.1| hypothetical protein L8106_19346 [Lyngbya sp. PCC 8106] Length = 79 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 23/32 (71%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 +R R LG+SQEKL LG++FQ V ++E+G Sbjct: 14 VRTLRERLGLSQEKLAASLGVSFQTVNRWERG 45 >gi|118574103|sp|Q8TZX4|Y1851_PYRFU RecName: Full=Putative HTH-type transcriptional regulatory protein PF1851 Length = 315 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG---ASRLQHI-SEVLESPIS 71 G+R+R R G S +L E LG++ + VQ+YEKG V A RL+ I E L PI Sbjct: 128 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEGMVSIDVAIRLEEIFDEPLVKPID 187 Query: 72 FF 73 F Sbjct: 188 IF 189 >gi|291540119|emb|CBL13230.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 118 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 10/84 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +I +GKR+R R+ + + + ++ + LG+T + +K E GV + + +VL + Sbjct: 15 ANIQIGKRLREARLNMNLEKSEIADVLGVTVEHYRKLEAGVTGIS------VDKVL--TL 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + + PT I+ E +N+ DF Sbjct: 67 YHKYGIDPTYL--ITGESSNIKDF 88 >gi|212703137|ref|ZP_03311265.1| hypothetical protein DESPIG_01176 [Desulfovibrio piger ATCC 29098] gi|212673403|gb|EEB33886.1| hypothetical protein DESPIG_01176 [Desulfovibrio piger ATCC 29098] Length = 117 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + G KK + + VG I RR +LG +Q E LG+ + + E+G+ RL+ Sbjct: 5 VAGTKK--QRLAVIVGANITARRKLLGWNQAAFAERLGMGADSLSRIERGLVAPRFQRLE 62 Query: 61 HISEVLESPISFFF 74 I+E+LE ++ F Sbjct: 63 EIAEILECSVAELF 76 >gi|188589861|ref|YP_001921889.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E3 str. Alaska E43] gi|188500142|gb|ACD53278.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E3 str. Alaska E43] Length = 160 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 11/108 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR L ++ E+LG+ +G+ V+K+E G+ +G R +I ++ ++SP Sbjct: 7 IRKRREELDLTYEQLGKIVGVGKSTVRKWETGM--IGNLRSDNI-----LALAKGLNLSP 59 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV---KVRQKIIELV 123 + + EE N DF T + +L ++ +++D+ + +++ EL Sbjct: 60 STLMGWTEEE-NTYDFNLTKEETKLLEHYNKLNDLGKKEANKRVAELT 106 >gi|294629979|ref|ZP_06708539.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14] gi|292833312|gb|EFF91661.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14] Length = 101 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK +R RR LGM+Q +L G+T V + E G + L+ ++ L+S + D Sbjct: 28 GKAVRDRRTALGMTQSRLAARAGMTQAAVSRLEHGGSTPTIPLLERLAAALDS--TLHLD 85 Query: 76 VSPTVCSDIS 85 ++P SD+S Sbjct: 86 IAPD--SDLS 93 >gi|257414340|ref|ZP_04746003.2| putative helix-turn-helix protein [Roseburia intestinalis L1-82] gi|257200419|gb|EEU98703.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] Length = 121 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 10/84 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +I +GKR+R R+ + + + ++ + LG+T + +K E GV + + +VL + Sbjct: 18 ANIQIGKRLREARLNMNLEKSEIADVLGVTVEHYRKLEAGVTGIS------VDKVL--TL 69 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + + PT I+ E +N+ DF Sbjct: 70 YHKYGIDPTYL--ITGESSNIKDF 91 >gi|282599891|ref|ZP_05972255.2| transcriptional regulator [Providencia rustigianii DSM 4541] gi|282567526|gb|EFB73061.1| transcriptional regulator [Providencia rustigianii DSM 4541] Length = 96 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+K P + VG++++ R G + +L I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNRKFP--IAYAVGQKVKSLRKSQGYTVFQLARECNISEQQLFRYERGVNRIDIDCLA 58 Query: 61 HISEVLESPISFFF 74 +S++L IS F Sbjct: 59 RVSKILNVNISDIF 72 >gi|210612788|ref|ZP_03289482.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|314950371|ref|ZP_07853647.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|317501730|ref|ZP_07959917.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319937809|ref|ZP_08012211.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] gi|210151402|gb|EEA82410.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|313643322|gb|EFS07902.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|316896852|gb|EFV18936.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319807039|gb|EFW03655.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] Length = 223 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 20/129 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI--------SEVL 66 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +E+L Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK-----VRQKIIE 121 + P + I E+ DF + D L N +F DD K K+I+ Sbjct: 71 SGEWKYIDHTEPYIMDIIKREQ----DFNVSLDYLSENEFF---DDEKECTFYKAYKLIQ 123 Query: 122 LVRSIVSSE 130 + + +++E Sbjct: 124 YIHNYITNE 132 >gi|150021357|ref|YP_001306711.1| putative prophage repressor [Thermosipho melanesiensis BI429] gi|149793878|gb|ABR31326.1| putative prophage repressor [Thermosipho melanesiensis BI429] Length = 206 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 15/66 (22%), Positives = 35/66 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R+ G++QE+LG + + + + YE G L+ +++ + + + Sbjct: 1 MNIGEKIKFLRLQKGLTQEQLGNIINVGQRTISAYESGKATPSVEVLKSLADYFDVAVDY 60 Query: 73 FFDVSP 78 F P Sbjct: 61 FLSDKP 66 >gi|296134047|ref|YP_003641294.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296032625|gb|ADG83393.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 255 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RIR R G+S G G++F + + E+G L+ I+ L P+S Sbjct: 70 LNIGDRIRALREEKGLSLVDFGNLTGLSFTYLSELERGTTVPAVGTLKKIAACLGVPVSL 129 Query: 73 FFD 75 F + Sbjct: 130 FIE 132 >gi|302878682|ref|YP_003847246.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581471|gb|ADL55482.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 124 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K + + + + +G I RR L +Q +L E +G+ + V ++E+G N RL+ ++E Sbjct: 6 KTLGSSLGLILGANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAE 65 Query: 65 VLESPI 70 L+ P+ Sbjct: 66 ALKIPL 71 >gi|183600898|ref|ZP_02962391.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] gi|188019224|gb|EDU57264.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] Length = 95 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 39/73 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ IR+ R+ G++ +LG+ +G++ QQ+ +YE+G + + S I V+ Sbjct: 12 INSEIGEFIRMIRIKKGLTGAELGKLIGVSQQQISRYERGYHTLSLSDFTFILSVMNVSF 71 Query: 71 SFFFDVSPTVCSD 83 F S SD Sbjct: 72 LDFISYSSFFKSD 84 >gi|18978223|ref|NP_579580.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] gi|18894036|gb|AAL81975.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] Length = 316 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG---ASRLQHI-SEVLESPIS 71 G+R+R R G S +L E LG++ + VQ+YEKG V A RL+ I E L PI Sbjct: 129 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEGMVSIDVAIRLEEIFDEPLVKPID 188 Query: 72 FF 73 F Sbjct: 189 IF 190 >gi|296159506|ref|ZP_06842330.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295890214|gb|EFG70008.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 102 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V R+R R+ G+SQE+LG GI ++ +YE+G + L I+ VL P+ Sbjct: 4 VAWRLREARIRSGLSQERLGIEAGIDEMSASARMNQYERGKHVPDLGTLSRIAAVLNLPV 63 Query: 71 SFFFDV 76 S+F+ V Sbjct: 64 SYFYSV 69 >gi|257469363|ref|ZP_05633457.1| hypothetical protein FulcA4_08479 [Fusobacterium ulcerans ATCC 49185] gi|317063609|ref|ZP_07928094.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689285|gb|EFS26120.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 168 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVSPTVCSDIS 85 GMSQEKL + LG++ Q V K+E G + ++ +S + E + DV+ C DI Sbjct: 15 GMSQEKLAQLLGVSRQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLKDVAEEKCIDIL 74 Query: 86 SEEN 89 +E Sbjct: 75 RKEK 78 >gi|332967905|gb|EGK06997.1| XRE family transcriptional regulator [Kingella kingae ATCC 23330] Length = 89 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR + R M+QEKLG +G + ++ +YEKG ++ + L I+++L+ P ++ Sbjct: 10 KRFKEARKAKKMTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLVWIAQILDVPPAY 69 Query: 73 FF 74 FF Sbjct: 70 FF 71 >gi|219853616|ref|YP_002470738.1| hypothetical protein CKR_0273 [Clostridium kluyveri NBRC 12016] gi|219567340|dbj|BAH05324.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 186 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R G++ + + E G++ + ++E+G+ + L I+ VL I++ Sbjct: 8 MNIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNVRINY 67 Query: 73 FFD 75 FFD Sbjct: 68 FFD 70 >gi|150018438|ref|YP_001310692.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904903|gb|ABR35736.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 8/86 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G+SQEKL E LGI+ Q V K+E G + +RL +SE + I + Sbjct: 5 EQLQTLRKAKGLSQEKLAEFLGISRQSVAKWEVGQSYPDIARLIALSEFFKVSIDKLVND 64 Query: 77 SPTVCSDISSEEN-------NVMDFI 95 C +S EEN N++DF+ Sbjct: 65 YEENCR-LSIEENKVNNINRNIIDFL 89 >gi|169351319|ref|ZP_02868257.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] gi|169291541|gb|EDS73674.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] Length = 212 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVL------- 62 Query: 74 FDVSPT 79 DV+P Sbjct: 63 -DVTPN 67 >gi|323498569|ref|ZP_08103562.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323316458|gb|EGA69476.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 103 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 11/92 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R+R R G++QE+LG LG+ ++ +YE G + + ++ I++VL++P+++ Sbjct: 7 RRLRHIRKKQGITQEELGYKLGMEPAGASARISQYETGKHAPDYATVKRIADVLQAPVAY 66 Query: 73 FF-------DVSPTVCSDISSEENNVMDFIST 97 F+ ++ S+ + ++DF+ T Sbjct: 67 FYCEDDLLAEIVVQAARYSSATKLEILDFVET 98 >gi|289423964|ref|ZP_06425757.1| hypothetical phagelike protein [Peptostreptococcus anaerobius 653-L] gi|289155741|gb|EFD04413.1| hypothetical phagelike protein [Peptostreptococcus anaerobius 653-L] Length = 253 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRI+ +R+ LG++QE+LG+ +G V KYE G+ ++++ +S F Sbjct: 39 MAKRIKEKRLELGLTQEELGKMIGTQRAAVNKYESGL-------VENMKRSTIKQLSLIF 91 Query: 75 DVSP 78 +V P Sbjct: 92 NVDP 95 >gi|218779193|ref|YP_002430511.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760577|gb|ACL03043.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 37/67 (55%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +GKRI R+ ++Q +L E +G++ + + + E+GV L ++E L S Sbjct: 2 SGLEKKIGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTLPSVKTLAKVAESLGS 61 Query: 69 PISFFFD 75 + FFD Sbjct: 62 SLKQFFD 68 >gi|253572159|ref|ZP_04849563.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251838339|gb|EES66426.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 136 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL----ES 68 +++G++I R + GM+Q LG+ LGIT Q V K E+ ++ R++ ++E L E Sbjct: 10 LHIGRKIERVRRLRGMTQTDLGDLLGITKQAVSKMEQ-TEKLDDERVKQVAEALGVTEEG 68 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F + ++ N I T L+ +F VK+ ++++++ R S Sbjct: 69 LKKFTEETVLYYTNNFYENSNATATNIGTISNLENINHFSMDQAVKLFEELLKIEREKYS 128 Query: 129 SEKK 132 K+ Sbjct: 129 GGKE 132 >gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 116 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + DI +G+RIR R M+Q+KL E + ++ + + E G V + I+E Sbjct: 3 KKNVSKGDIAIGQRIRKIREEKSMTQKKLAEKVMVSPSSITRLESGQTMVSVFTIIKIAE 62 Query: 65 VLESPISFFF 74 VL + ISF Sbjct: 63 VLNTSISFLL 72 >gi|291327181|ref|ZP_06127260.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311305|gb|EFE51758.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 118 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FFFDVSPTV 80 G+S +LG+ +G++ QQ+ +YE+ V+R+ L ++ L+ P+S F + VS + Sbjct: 44 GLSGSELGKKIGVSQQQISRYERNVSRLDFGSLIYLLHHLDMPLSDFLYHVSSQL 98 >gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849947|gb|EEX69954.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 164 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 20/138 (14%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ R++ R GM ++++ E LGIT Q YE G S L +S++ + P+ Sbjct: 8 MDMVFANRLKEVRERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKLSKIFDIPV 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL-------NRYFIQI--------DDVKV 115 P + ++ DFI++ DG + N Y + I D V Sbjct: 68 DVLCSPYP-----VDMTIDSCSDFINSIDGCGIERMTDNPNNYLVTIPYSPEYSLDLVMP 122 Query: 116 RQKIIELVRSIVSSEKKY 133 R+ +I + +S+ S+ + Sbjct: 123 REDVISMCQSVNGSKTAF 140 >gi|153011851|ref|YP_001373064.1| helix-turn-helix domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151563739|gb|ABS17235.1| helix-turn-helix domain protein [Ochrobactrum anthropi ATCC 49188] Length = 181 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SP 69 +D + K +R R G+ Q +G++ +YE+ +++ +R+ HI EVL P Sbjct: 60 IDQRLAKYLRDARDSAGLKQADFAPLMGLSTPVYGRYERAFSKLHVTRMVHICEVLNIMP 119 Query: 70 ISFFFDVSPTV 80 I ++ +P + Sbjct: 120 IEMLYEAAPHL 130 >gi|75758655|ref|ZP_00738772.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493826|gb|EAO56925.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINVGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 65 NFF------LEDTNTEE 75 >gi|309774998|ref|ZP_07670014.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319936258|ref|ZP_08010677.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|325262574|ref|ZP_08129311.1| transcriptional regulator, PbsX family [Clostridium sp. D5] gi|308917252|gb|EFP62976.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319808690|gb|EFW05232.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|324032406|gb|EGB93684.1| transcriptional regulator, PbsX family [Clostridium sp. D5] Length = 211 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVL------- 62 Query: 74 FDVSPT 79 DV+P Sbjct: 63 -DVTPN 67 >gi|228907976|ref|ZP_04071826.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228851642|gb|EEM96446.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 184 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 63 NFF------LEDTNTEE 73 >gi|227824270|ref|ZP_03989102.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827135|ref|ZP_04453204.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|331084539|ref|ZP_08333639.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] gi|157816229|gb|ABV82121.1| HTH domain protein [Eubacterium saburreum] gi|157816232|gb|ABV82123.1| HTH domain protein [Streptococcus salivarius] gi|226904769|gb|EEH90687.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788753|gb|EEP24867.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|330401089|gb|EGG80683.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] Length = 114 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 6 TDITTGKQIRHLRTQSGMTQEELAGKLNVTRQALSNWERDVNEPDLNTLKKICFLFGVHM 65 Query: 71 SFFFDVSPTVCSDISSEE----NNVMDFISTPDGLQLNRYFIQI 110 D + V + + + E +N++ I D ++ YF+ + Sbjct: 66 D---DFAKEVITKMETCEKKRNDNLISMIWQLDFFMVSGYFLAL 106 >gi|212710259|ref|ZP_03318387.1| hypothetical protein PROVALCAL_01318 [Providencia alcalifaciens DSM 30120] gi|212687066|gb|EEB46594.1| hypothetical protein PROVALCAL_01318 [Providencia alcalifaciens DSM 30120] Length = 125 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 VG IR R+ ++ E+LG L I+ QQ+ +YE+G+ V L I L S FF Sbjct: 23 VGSFIREARLNCSLTGEELGRMLHISQQQISRYERGITSVSIETLDAILNKLGKDWSDFF 82 Query: 74 FDVSPTVCSDIS 85 F V +++ Sbjct: 83 FKVIANYSDEVA 94 >gi|153955926|ref|YP_001396691.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856268|ref|YP_002473390.1| hypothetical protein CKR_2925 [Clostridium kluyveri NBRC 12016] gi|146348784|gb|EDK35320.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569992|dbj|BAH07976.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 200 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 30/66 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI R+ L R MSQ +L E LG+T Q + KYE G L+ +S + I Sbjct: 65 DIENMNRLSLLRKSHNMSQAELAEKLGVTQQTISKYENGSREPDTETLKLLSSIFNVSID 124 Query: 72 FFFDVS 77 + + Sbjct: 125 YLLGAT 130 >gi|312891359|ref|ZP_07750876.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296053|gb|EFQ73205.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 113 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +GK+IRL R G SQE + + L I+ K E G+ + SRL+ IS Sbjct: 3 TLGKKIRLLRHQRGWSQEDVAKRLDISIPAFSKIETGITDINLSRLEQIS 52 >gi|222087768|ref|YP_002546305.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725216|gb|ACM28372.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ ++ L Sbjct: 35 NNLEMAIGHEVRAYRKKLGITGADLASATGISLGMLSKIENGNTSPSLTTLQSLARALGV 94 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF EE F+ +GL++ R Sbjct: 95 PVTAFFR---------RFEEKRNAVFVKAGEGLEMER 122 >gi|148544266|ref|YP_001271636.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531300|gb|ABQ83299.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] Length = 264 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 13/108 (12%) Query: 3 GNKKIPNPVDI-------NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 N K P +D N G I + R M+Q++LG +G+T + + +YE G+ + Sbjct: 67 SNSKAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIP 126 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 L+ +SE L S S+ V+ +++ DFI + D +L Sbjct: 127 IETLKKLSEALGSEASYLLGVNGKYLP------HSMNDFILSLDDHEL 168 >gi|237733521|ref|ZP_04564002.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383354|gb|EEO33445.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 211 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVL------- 62 Query: 74 FDVSPT 79 DV+P Sbjct: 63 -DVTPN 67 >gi|47091696|ref|ZP_00229492.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|254853835|ref|ZP_05243183.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|254933600|ref|ZP_05266959.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|255521409|ref|ZP_05388646.1| hypothetical protein LmonocFSL_09325 [Listeria monocytogenes FSL J1-175] gi|300765051|ref|ZP_07075038.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|47020015|gb|EAL10752.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258607218|gb|EEW19826.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|293585163|gb|EFF97195.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300514176|gb|EFK41236.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|328467297|gb|EGF38377.1| hypothetical protein LM1816_00625 [Listeria monocytogenes 1816] gi|328475606|gb|EGF46359.1| hypothetical protein LM220_07617 [Listeria monocytogenes 220] gi|332311156|gb|EGJ24251.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 169 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|251789116|ref|YP_003003837.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537737|gb|ACT06358.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 81 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 35/76 (46%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V K P +G+ IR RR +LG+SQE L GI + + E+G V L Sbjct: 4 VSGKNDPAHALPLLGQTIRQRRELLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLR 63 Query: 62 ISEVLESPISFFFDVS 77 I++ LE + F + Sbjct: 64 IADALEWSLEQLFAAA 79 >gi|226223363|ref|YP_002757470.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823987|ref|ZP_05228988.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|225875825|emb|CAS04528.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593215|gb|EFG00976.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] Length = 169 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|114766076|ref|ZP_01445085.1| transcriptional regulator, putative [Pelagibaca bermudensis HTCC2601] gi|114541631|gb|EAU44672.1| transcriptional regulator, putative [Roseovarius sp. HTCC2601] Length = 436 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D G RIR RR+ILGM Q +L + I+ + E R+G L ++E+L Sbjct: 4 DTLTGSRIRERRIILGMKQAELARRVDISASYLNLIEHNRRRIGGKLLLDLAEIL 58 >gi|58696655|ref|ZP_00372209.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58537179|gb|EAL60281.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 279 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L I+ L I Sbjct: 145 IGQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 204 >gi|256823110|ref|YP_003147073.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796649|gb|ACV27305.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 175 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 +++RL+R G SQE+L E G++ + +Q+ E+G + + ++ V E I+ F Sbjct: 4 RKLRLKR---GWSQEQLAELTGVSTRTIQRIERGQTKPSLETQKSLAAVFEVDIATFEPS 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 + T D+S+ + N + PD Sbjct: 61 LSMDSTGEPDMSTTDTNATEPKQQPD 86 >gi|217965166|ref|YP_002350844.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|217334436|gb|ACK40230.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|307570274|emb|CAR83453.1| DNA-binding protein [Listeria monocytogenes L99] Length = 169 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|16802775|ref|NP_464260.1| hypothetical protein lmo0733 [Listeria monocytogenes EGD-e] gi|47095298|ref|ZP_00232909.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499603|ref|ZP_03667952.1| hypothetical protein LmonF1_07864 [Listeria monocytogenes Finland 1988] gi|224501962|ref|ZP_03670269.1| hypothetical protein LmonFR_05517 [Listeria monocytogenes FSL R2-561] gi|254828817|ref|ZP_05233504.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|254830277|ref|ZP_05234932.1| hypothetical protein Lmon1_02912 [Listeria monocytogenes 10403S] gi|254900031|ref|ZP_05259955.1| hypothetical protein LmonJ_09460 [Listeria monocytogenes J0161] gi|254911416|ref|ZP_05261428.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935743|ref|ZP_05267440.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255028966|ref|ZP_05300917.1| hypothetical protein LmonL_06926 [Listeria monocytogenes LO28] gi|284801064|ref|YP_003412929.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284994206|ref|YP_003415974.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|16410122|emb|CAC98811.1| lmo0733 [Listeria monocytogenes EGD-e] gi|47016369|gb|EAL07291.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|258601229|gb|EEW14554.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258608327|gb|EEW20935.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056626|gb|ADB67567.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284059673|gb|ADB70612.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|293589357|gb|EFF97691.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 169 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|312136006|ref|YP_004003344.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311776057|gb|ADQ05544.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 177 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 38/80 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R+ R G + +++ E LGIT KYE+ +L I+++ + F Sbjct: 3 GERLRMLRNEKGFTMQQMAEMLGITIGSWAKYERNEAEPSFDKLVKIADIFNVSVDFLLG 62 Query: 76 VSPTVCSDISSEENNVMDFI 95 + + + E N+ ++I Sbjct: 63 RTNVRNDKLGNNETNIKNYI 82 >gi|46906984|ref|YP_013373.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880250|gb|AAT03550.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] Length = 169 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|207743919|ref|YP_002260311.1| helix-turn-helix domain transcription regulator protein [Ralstonia solanacearum IPO1609] gi|206595321|emb|CAQ62248.1| probable helix-turn-helix domain transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 118 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+ + RR G++Q+++ E L I + V + E+G+ RL ++EV E I Sbjct: 14 SIGRTLAQRREAKGLTQDQVAEALHIGTEAVSRMERGITMPTVQRLAELAEVYECGIDEL 73 Query: 74 FDVSPTVCSD 83 S T D Sbjct: 74 LIASSTRTGD 83 >gi|315925909|ref|ZP_07922114.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620730|gb|EFV00706.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 188 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQ++L L + Q V K+E+G++ + L ISEVLE+P+S Sbjct: 33 GLSQDELAVKLNVVRQTVSKWERGLSVPDSEMLISISEVLETPVS 77 >gi|291520457|emb|CBK75678.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 111 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+L R ++QEKL E L I+ V K E+G+ L I+++++ I+ Sbjct: 8 IGSRIKLYRKSKKLTQEKLAELLAISVGYVSKMERGIEHPNLEMLSSIAQIVDCDIA 64 >gi|254993818|ref|ZP_05276008.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] Length = 169 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|228921209|ref|ZP_04084538.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838424|gb|EEM83736.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 184 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 63 NFF------LEDTNTEE 73 >gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] Length = 169 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|78046656|ref|YP_362831.1| XRE family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035086|emb|CAJ22731.1| putative transcriptional regulator, XRE family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 118 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQ-----QVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+R R+ LG+ Q LG LG+ Q ++ +YE G + +++ L P+ Sbjct: 19 GRRLRTARLSLGLRQADLGRMLGMEEQNTGAPRISRYETGQHDPDPETAAELAQALGLPL 78 Query: 71 SFFFDVSPTVCSD 83 ++F+ +P + ++ Sbjct: 79 AYFY-ATPDMLAE 90 >gi|194337612|ref|YP_002019406.1| helix-turn-helix domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194310089|gb|ACF44789.1| helix-turn-helix domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 359 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R G++ LG +G+T +QKYEKG+ +S L +++ +FF Sbjct: 5 RIRQARQAAGLTLAALGAKIGVTHTAIQKYEKGIITPSSSILLKLAQACGVRTEYFF 61 >gi|255018407|ref|ZP_05290533.1| hypothetical protein LmonF_13171 [Listeria monocytogenes FSL F2-515] Length = 163 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|184153646|ref|YP_001841987.1| hypothetical protein LAR_0991 [Lactobacillus reuteri JCM 1112] gi|227364982|ref|ZP_03849023.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|325681705|ref|ZP_08161225.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri MM4-1A] gi|183224990|dbj|BAG25507.1| hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227069993|gb|EEI08375.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|324979017|gb|EGC15964.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri MM4-1A] Length = 266 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 13/108 (12%) Query: 3 GNKKIPNPVDI-------NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 N K P +D N G I + R M+Q++LG +G+T + + +YE G+ + Sbjct: 69 SNSKAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIP 128 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 L+ +SE L S S+ V+ +++ DFI + D +L Sbjct: 129 IETLKKLSEALGSEASYLLGVNGKYLP------HSMNDFILSLDDHEL 170 >gi|262199526|ref|YP_003270735.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082873|gb|ACY18842.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 123 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+RL R LGM Q +L G++ + Q+ E G L IS+ L+ +SFF Sbjct: 10 LGQRLRLVREGLGMGQGELASACGVSDARYQEIEAGSYLPSIDELIAISDALDIDVSFF- 68 Query: 75 DVSPTVCSDI 84 C DI Sbjct: 69 ------CEDI 72 >gi|218510037|ref|ZP_03507915.1| hypothetical protein RetlB5_22605 [Rhizobium etli Brasil 5] Length = 167 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVSPTVCSDIS 85 G+S+ + LG++ +YE+ +++ +R+ H+ E+L PI F+ +P + S Sbjct: 58 GLSRADVAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFMPIDMIFEAAPHLWGRTS 117 Query: 86 SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEE 138 E D L L R ++ + R I L R I ++ R I + Sbjct: 118 EEAE---------DCLTLARILRRLPNGTTRDLIRLLQRMIPDDDESDRDISD 161 >gi|167767648|ref|ZP_02439701.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|319938591|ref|ZP_08012978.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] gi|167710665|gb|EDS21244.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|291560782|emb|CBL39582.1| Predicted transcription factor, homolog of eukaryotic MBF1 [butyrate-producing bacterium SSC/2] gi|319806227|gb|EFW02919.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] Length = 223 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 14/126 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI--------SEVL 66 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +E+L Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK--VRQKIIELVR 124 + P + I E+ DF + D L N +F + + + K+I+ + Sbjct: 71 SGEWKYIDHTEPYIMDIIKREQ----DFNVSLDYLSENEFFNDEKECRFYMETKLIQYIH 126 Query: 125 SIVSSE 130 + +++E Sbjct: 127 NYITNE 132 >gi|167759352|ref|ZP_02431479.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] gi|167662909|gb|EDS07039.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] Length = 257 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K I+LRR GMSQE+L + LGIT Q V K+E G S+L +SE+ + I + Sbjct: 6 KLIQLRRK-QGMSQEQLADRLGITRQSVSKWESGSAAPELSKLITLSEMFQVSIDYL 61 >gi|99081351|ref|YP_613505.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037631|gb|ABF64243.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 443 Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 29/57 (50%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P D G RIR RRM+LG+ Q L GI+ + E R+G L +++VL Sbjct: 2 PGDSLTGSRIRERRMMLGLRQADLARDAGISASYLNLIEHNRRRIGGKLLVTLAQVL 58 >gi|313677569|ref|YP_004055565.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944267|gb|ADR23457.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 171 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVL 66 R+ G+SQ+KL + LGI+ QQVQ+ E N ++ A +LQ IS+ L Sbjct: 83 RIASGVSQKKLADQLGISPQQVQRNETNDNQQLSAKKLQGISDAL 127 >gi|300773794|ref|ZP_07083663.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759965|gb|EFK56792.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] Length = 110 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 26/118 (22%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IRL R G SQE + + L I+ K E G+ V SRL IS+ F Sbjct: 4 LGKKIRLLRHQKGWSQEDVAKRLDISIPAFSKIETGITDVNLSRLNQISK--------LF 55 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD----VKVRQ-KIIELVRSIV 127 +S V+ +ST D + +Y ++ D ++VR+ ++IEL + ++ Sbjct: 56 SLS-------------VVQLLSTSDSEEDKQYANELADMSKKLQVRETEVIELQKKVI 100 >gi|239815284|ref|YP_002944194.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801861|gb|ACS18928.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 135 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +G+RI R + Q +L E LG+ Q +Q YE G R+ S L ++ L Sbjct: 24 VAMGERIAQLRKARSLPQTQLAEALGVAQQTLQAYEAGTRRIPVSALPTVARTL 77 >gi|94986009|ref|YP_605373.1| hypothetical protein Dgeo_1909 [Deinococcus geothermalis DSM 11300] gi|94556290|gb|ABF46204.1| Zn peptidase and DNA-binding HTH-like domain [Deinococcus geothermalis DSM 11300] Length = 376 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R++ R G+S E LGE +G++ Q + K E V+ I + L+ P FF+ Sbjct: 9 GWRLKQAREAYGLSLESLGELVGVSKQAISKMENDVSEPSPEVFLKICQSLKRPAEFFY 67 >gi|70727102|ref|YP_254016.1| hypothetical protein SH2101 [Staphylococcus haemolyticus JCSC1435] gi|68447826|dbj|BAE05410.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 305 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +GKRI+ R+ +G +Q + G+ + V +EKGV+ A RL+ I+ + Sbjct: 7 IGKRIKEIRLKIGKTQTQFGDLFSASKGNVATWEKGVSLPNAKRLKEIARL 57 >gi|238894195|ref|YP_002918929.1| putative repressor protein of prophage [Klebsiella pneumoniae NTUH-K2044] gi|238546511|dbj|BAH62862.1| putative repressor protein of prophage [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 241 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 29/58 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR RR L ++Q LG+ +G+ V +E G G S LQ +S L+ + D Sbjct: 29 RIRARRKELKLTQAVLGKLVGVNRVTVTGWESGDYAPGGSNLQALSAALKCSPKWLID 86 >gi|329725145|gb|EGG61635.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 112 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L ++Q++LGE L + YE G L I+ +L I F Sbjct: 10 IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDLF 69 Query: 75 DVSPTVCSDISS 86 +DI+S Sbjct: 70 PTRNNKKNDITS 81 >gi|302672234|ref|YP_003832194.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396707|gb|ADL35612.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 374 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G +I+ R+ ++QEKL E L ++FQ + ++E G++ S + I+ + Sbjct: 3 NLGSKIKELRIAENLTQEKLAEELNVSFQSISRWENGISTPDISLIPAIARFFGVSTDYL 62 Query: 74 F 74 F Sbjct: 63 F 63 >gi|169349646|ref|ZP_02866584.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] gi|169293721|gb|EDS75854.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] Length = 211 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVL------- 62 Query: 74 FDVSPT 79 DV+P Sbjct: 63 -DVTPN 67 >gi|166033610|ref|ZP_02236439.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210608449|ref|ZP_03287825.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|317500066|ref|ZP_07958301.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] gi|166026795|gb|EDR45552.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210153068|gb|EEA84074.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|316898551|gb|EFV20587.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVL------- 62 Query: 74 FDVSPT 79 DV+P Sbjct: 63 -DVTPN 67 >gi|42520474|ref|NP_966389.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630361|ref|YP_002727152.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630755|ref|YP_002727546.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|42410213|gb|AAS14323.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592342|gb|ACN95361.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592736|gb|ACN95755.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 303 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L I+ L I Sbjct: 169 IGQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 228 >gi|212711619|ref|ZP_03319747.1| hypothetical protein PROVALCAL_02694 [Providencia alcalifaciens DSM 30120] gi|212685721|gb|EEB45249.1| hypothetical protein PROVALCAL_02694 [Providencia alcalifaciens DSM 30120] Length = 91 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G +IR R G+S + + +GI+ QQ +YE+G NR+ RL+ + Sbjct: 6 PVSAVIGYKIRELRKEKGLSLLAVAKTIGISEQQQLRYERGHNRISIDRLKQYAIYFNIN 65 Query: 70 ISFFF 74 I+ FF Sbjct: 66 INDFF 70 >gi|319934812|ref|ZP_08009257.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319810189|gb|EFW06551.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 302 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G +++ R G+SQE L E L ++ Q V K+E G +L IS++ I + Sbjct: 1 MDFGMKLQSLRKEKGLSQEALAEKLHVSRQAVSKWESGAGYPEMDKLILISDLFGVTIDY 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D +V D +E M+ + + R+F V I+ ++ I+ S+K Sbjct: 61 LIKDSHESVPDDQRAESKYFMNSQKIKEYMNFKRHFGLRIGGAVSAIILSVIFPILMSDK 120 Query: 132 KYRTIEEECMV 142 +Y I M+ Sbjct: 121 QYEMIGTMIML 131 >gi|228926912|ref|ZP_04089978.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936979|ref|ZP_04099721.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822694|gb|EEM68584.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832647|gb|EEM78218.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 118 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 6/119 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R + QE+LG+ +G++ Q + KYEKG ++ +++ P+ + Sbjct: 4 IGERIFELRKEKKLVQEELGKYIGVSKQTISKYEKGTKIPSRENIEKLADFFSVPVDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-IVSSEKK 132 SD +++ +N + I D L + + D+++ + ++E+ S ++ EKK Sbjct: 64 G-----KSDSTNKSSNNIKEIFESDELHWDGRKLSPDEIESVKALLEVAISRMLKQEKK 117 >gi|227539648|ref|ZP_03969697.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240561|gb|EEI90576.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 110 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 32/65 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IRL R G SQE + + L I+ K E G+ V SRL IS++ + Sbjct: 4 LGKKIRLLRHQKGWSQEDVAKRLDISIPAFSKIETGITDVNLSRLNQISKLFSLSVVQLL 63 Query: 75 DVSPT 79 S + Sbjct: 64 STSDS 68 >gi|126699511|ref|YP_001088408.1| putative phage repressor [Clostridium difficile 630] gi|255101028|ref|ZP_05330005.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|115250948|emb|CAJ68776.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 169 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|319743893|gb|EFV96285.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 150 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R+ ++Q +L + L T Q + +YEKG + L +S++ E I FF Sbjct: 7 VGNKIKQFRLEKKLTQTQLADLLDTTKQTISRYEKGDRKANQDVLFALSDLFEKTIDDFF 66 >gi|304395821|ref|ZP_07377703.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304356190|gb|EFM20555.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 232 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RIRL+R L ++Q+ L E G+ V +EK + + LQ +++ L+ ++ Sbjct: 17 MNMGERIRLKRKELNLTQQALAEKAGVNRVTVTGWEKDDYQPNGANLQALADALKCDPTW 76 Query: 73 F 73 Sbjct: 77 L 77 >gi|307129576|ref|YP_003881592.1| hypothetical protein Dda3937_01730 [Dickeya dadantii 3937] gi|306527105|gb|ADM97035.1| hypothetical protein Dda3937_01730 [Dickeya dadantii 3937] Length = 116 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+RL R+ +G++Q +LG GI +V +YEK + + + VL+ P Sbjct: 23 IGKRLRLARVNVGLTQAELGRQAGIDEESAGARVSQYEKETHAPDFKLVCRFAAVLDVPE 82 Query: 71 SFFFDVSPTVCS 82 ++F+ V + + Sbjct: 83 AYFYAVDDDLAT 94 >gi|290894443|ref|ZP_06557403.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|290556004|gb|EFD89558.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] Length = 169 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|89255372|ref|NP_659801.2| hypothetical protein RHE_PD00237 [Rhizobium etli CFN 42] gi|190894245|ref|YP_001984539.1| hypothetical protein RHECIAT_PB0000282 [Rhizobium etli CIAT 652] gi|218682580|ref|ZP_03530181.1| hypothetical protein RetlC8_27503 [Rhizobium etli CIAT 894] gi|89213326|gb|AAM54815.2| hypothetical protein RHE_PD00237 [Rhizobium etli CFN 42] gi|190699906|gb|ACE93989.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 167 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 10/113 (8%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVSPTVCSDIS 85 G+S+ + LG++ +YE+ +++ +R+ H+ E+L PI F+ +P + S Sbjct: 58 GLSRADVAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFMPIDMIFEAAPHLWGRTS 117 Query: 86 SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEE 138 E D L L R ++ + R I L R I ++ R I + Sbjct: 118 EEAE---------DCLTLARILRRLPNGTTRDLIRLLQRMIPDDDESDRGISD 161 >gi|332686910|ref|YP_004456684.1| repressor protein [Melissococcus plutonius ATCC 35311] gi|332370919|dbj|BAK21875.1| repressor protein [Melissococcus plutonius ATCC 35311] Length = 239 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++QE L + L T Q + +YE G + L +SE+ E I+ FF Sbjct: 8 IGNKIKEYRERRNLTQEDLADMLNTTRQSISRYETGERKANQDMLFKLSEIYEISINDFF 67 >gi|295100273|emb|CBK97818.1| Predicted transcriptional regulator with C-terminal CBS domains [Faecalibacterium prausnitzii L2-6] Length = 184 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 3/105 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+R+++RR LGMSQE+L +G + + K E G + S+++ I++ LE+ S Sbjct: 1 MTIGQRVKIRREELGMSQEELATKVGYKSKSSINKIELGFRVLTQSKIKVIADALETTPS 60 Query: 72 FF--FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + +D S ++VM ++ D L I + +++ Sbjct: 61 YIMGWDEESHQNEWSSKFRDSVMQILNNADPADLKAAGISVQEIE 105 >gi|189423269|ref|YP_001950446.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189419528|gb|ACD93926.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 161 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NPV I G IR RRM LG+ Q ++ E +G+T V +E GV LQ+ +++ Sbjct: 32 NPVTI--GDHIRKRRMDLGLLQREVAEIIGVTESSVWNWEHGVE----PELQYNPRIIK- 84 Query: 69 PISFFFDVSPTVCSD 83 F P C D Sbjct: 85 ----FLGYIPFDCPD 95 >gi|188026190|ref|ZP_02961203.2| hypothetical protein PROSTU_03206 [Providencia stuartii ATCC 25827] gi|188021969|gb|EDU60009.1| hypothetical protein PROSTU_03206 [Providencia stuartii ATCC 25827] Length = 99 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + +VL+ Sbjct: 8 PVACAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVRVLKVLDVN 67 Query: 70 ISFFF 74 + FF Sbjct: 68 MGEFF 72 >gi|92113335|ref|YP_573263.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796425|gb|ABE58564.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 205 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G RI+ RM G+S+ L +G++ + +E G + ++G RL ++E LE P+ Sbjct: 3 TLGPRIKQLRMEAGLSKAALARRVGVSDVTISYWESGTIKQIGHERLLSLAEALECPLER 62 Query: 73 FFD 75 D Sbjct: 63 LLD 65 >gi|291537327|emb|CBL10439.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 138 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++GKRI+ RR L ++Q ++ E GI+ + E+G A+ L +SE+L+ I + Sbjct: 7 SIGKRIKKRRKELHLTQTEIKEKTGISSGNMSDIERGNRLPAATTLAQLSEILDCSIDWI 66 Query: 74 F 74 Sbjct: 67 L 67 >gi|225018741|ref|ZP_03707933.1| hypothetical protein CLOSTMETH_02691 [Clostridium methylpentosum DSM 5476] gi|224948469|gb|EEG29678.1| hypothetical protein CLOSTMETH_02691 [Clostridium methylpentosum DSM 5476] Length = 116 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 33/67 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI R L + Q+ L +GIT + KYE+ +N A L I++ L + F Sbjct: 2 LTLGDRIISLRQDLDIQQKDLAAQIGITKSSMSKYERNINIPNAEILSKIADALNTTTDF 61 Query: 73 FFDVSPT 79 +P+ Sbjct: 62 LLGRTPS 68 >gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 111 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +GKRI R+ L ++QE+L E G + + ++E G + L +S+VL I +F Sbjct: 6 IGKRIAEARINLNITQEQLEELSGFSVSTISRFETGRTQPSIENLIKLSKVLNVGIDYFL 65 Query: 74 FDVSP 78 +D+ P Sbjct: 66 YDLIP 70 >gi|320120590|gb|EFE29126.2| GTP pyrophosphokinase [Filifactor alocis ATCC 35896] Length = 271 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+G IR R G +QEKL E L ++FQ V +E+ + L ++E+L+ +S Sbjct: 1 MNIGMNIRRLREERGFTQEKLAEKLNVSFQAVSAWEREEYKPDLDNLIKLTEILDVSLS 59 >gi|299534571|ref|ZP_07047903.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] gi|298729944|gb|EFI70487.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] Length = 180 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PIS 71 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L I EVL S P Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSRPKD 60 Query: 72 FFFDVSP 78 FF D SP Sbjct: 61 FFDDESP 67 >gi|104303743|gb|ABF72139.1| HTH domain protein [Arcanobacterium pyogenes] Length = 49 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 +I GK+IR R LGM+QE+L L +T Q + +E+GV++ Sbjct: 6 TNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERGVSQ 48 >gi|327405730|ref|YP_004346568.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321238|gb|AEA45730.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 298 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 44/84 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R +SQ +L E L I+ Q V K+E+G + L +SE+L+ +++F Sbjct: 7 IGQRIADARKKTTISQAQLSERLFISPQAVGKWERGESMPDIITLNRLSEILDVDLNYFS 66 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D + S+ N++ + + P Sbjct: 67 DGFTSAVSEEKKSSNSLQELLEKP 90 >gi|229070587|ref|ZP_04203825.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228712492|gb|EEL64429.1| Transcriptional regulator, MerR [Bacillus cereus F65185] Length = 186 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +IN+G++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINIGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 65 NFF------LEDTNTEE 75 >gi|294478947|gb|ADE87512.1| transcriptional regulator [Deep-sea thermophilic phage D6E] Length = 206 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I R + G+S E+LG +G+T + +++YE G R+ R+ I+E L+ + + Sbjct: 8 VGQNIEKYRKMKGLSAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIAEALDVDPADLY 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 + + V +E+ ++ IS +G Sbjct: 68 EGTDVVEFTDETEKLPIVGAISCGNG 93 >gi|313899162|ref|ZP_07832684.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956040|gb|EFR37686.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL Sbjct: 6 LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVL-------- 57 Query: 75 DVSPT 79 DV+P Sbjct: 58 DVTPN 62 >gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 182 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 46/80 (57%), Gaps = 5/80 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++IR+ R G++ ++L E G++ + + E+G + S L+ I++ L PI+ F Sbjct: 5 DLARQIRVSRTNAGLTLKELSEKTGLSVSFISQVERGTSSPAISSLKKIADGLNVPITSF 64 Query: 74 FDVSP---TVCSDISSEENN 90 F +P T + ++SE+ + Sbjct: 65 F--TPEQNTTYTSVASEQRS 82 >gi|225855439|ref|YP_002736951.1| transcriptional activator [Streptococcus pneumoniae JJA] gi|225723117|gb|ACO18970.1| transcriptional activator [Streptococcus pneumoniae JJA] Length = 287 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ V S++S+ Sbjct: 62 FNEQIEVKSNLSN 74 >gi|169335255|ref|ZP_02862448.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] gi|169257993|gb|EDS71959.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] Length = 143 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ R ++Q++LGE LG+ + YEKG +V A +SE+ + + Sbjct: 20 IGDRIKELRKENKLTQQELGEKLGVHSNTISMYEKGNRKVSAEMANKLSEIFNVSVGY 77 >gi|153012131|ref|YP_001373341.1| cupin 2 domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151564019|gb|ABS17512.1| Cupin 2 conserved barrel domain protein [Ochrobactrum anthropi ATCC 49188] Length = 202 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 8 PNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P P D ++G RIRLRR LG++ L E G++ + + E+G+ L I+EVL Sbjct: 15 PAPNDAGDIGARIRLRRQTLGLTLGYLSEVSGLSTGALSQIERGLVSPTVRTLYTIAEVL 74 >gi|254975493|ref|ZP_05271965.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255092881|ref|ZP_05322359.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255314622|ref|ZP_05356205.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255517296|ref|ZP_05384972.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255650403|ref|ZP_05397305.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|260683516|ref|YP_003214801.1| putative phage repressor [Clostridium difficile CD196] gi|260687176|ref|YP_003218310.1| putative phage repressor [Clostridium difficile R20291] gi|306520382|ref|ZP_07406729.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|260209679|emb|CBA63401.1| putative phage repressor [Clostridium difficile CD196] gi|260213193|emb|CBE04666.1| putative phage repressor [Clostridium difficile R20291] Length = 169 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|75760227|ref|ZP_00740282.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492280|gb|EAO55441.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 65 NFF------LEDTNTEE 75 >gi|58699926|ref|ZP_00374515.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533557|gb|EAL57967.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 293 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L I+ L I Sbjct: 183 IGQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 242 >gi|268589793|ref|ZP_06124014.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gi|291314781|gb|EFE55234.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 107 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE- 67 N V G+ ++ +R+++G+S E L + + ++ QQ+ +YE+G+ + + L VL Sbjct: 13 NWVSTVTGQFLKEQRLMMGLSGEALAKKMQLSQQQISRYERGMTHINLTTLLRYFSVLNM 72 Query: 68 --SPISFFFDV 76 I +FF++ Sbjct: 73 DVREIQYFFEL 83 >gi|325926434|ref|ZP_08187757.1| putative transcription factor, MBF1 like protein [Xanthomonas perforans 91-118] gi|325543177|gb|EGD14617.1| putative transcription factor, MBF1 like protein [Xanthomonas perforans 91-118] Length = 134 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 6/74 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R+R RM +G +Q +L E +G+ +V +YE G + + + +++ L+ P+ Sbjct: 32 GTRLRHARMAMGWTQAELAERIGMVDNVSGATRVSRYETGQHDPDPATAEALAKALKLPV 91 Query: 71 SFFFDVSPTVCSDI 84 ++F S + +DI Sbjct: 92 AYFHATS-DLLADI 104 >gi|312891075|ref|ZP_07750598.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296383|gb|EFQ73529.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 116 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI---- 70 +GK I+L R G SQ LGI+ K E G+ + SRL +I+++L+ I Sbjct: 4 LGKNIKLLRHEKGWSQSDFAAKLGISVPAFSKIENGLTDLHLSRLNNIAKILDMSIVELL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 SF V +++ S + ++ +++ LQ Sbjct: 64 SFQKSVRNNDANELDSAKESIKNYMEQILNLQ 95 >gi|222053908|ref|YP_002536270.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563197|gb|ACM19169.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 150 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 5/102 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G R+++ RM ++Q++L + G+ + + K E+G L IS+ L P+ Sbjct: 3 LKIGSRLKMLRMERSLTQKELAVMVSGGLDYTYIGKIERGEQLPSLKILLKISDALSVPV 62 Query: 71 -SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 SFF D SDI+S E + IS G QL + +D Sbjct: 63 ASFFQDELFAAASDIASSELRYL--ISEETGRQLVKALKLVD 102 >gi|257879403|ref|ZP_05659056.1| predicted protein [Enterococcus faecium 1,230,933] gi|323142551|ref|ZP_08077367.1| toxin-antitoxin system, antitoxin component, Xre domain protein [Phascolarctobacterium sp. YIT 12067] gi|257813631|gb|EEV42389.1| predicted protein [Enterococcus faecium 1,230,933] gi|295100959|emb|CBK98504.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] gi|322412984|gb|EFY03887.1| toxin-antitoxin system, antitoxin component, Xre domain protein [Phascolarctobacterium sp. YIT 12067] Length = 130 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 9/77 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVL 66 D ++G+R++ R ++Q++LG +G + + ++ +YEK A ++EVL Sbjct: 6 TDTSIGQRLKFVRRFRRLTQKELGLLMGYSEKTADVRIAQYEKNARTPNAETTAKLAEVL 65 Query: 67 E-SPISFFFDVSPTVCS 82 + SP+ F SPT+C+ Sbjct: 66 KVSPVVF----SPTICA 78 >gi|197285673|ref|YP_002151545.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227356180|ref|ZP_03840569.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194683160|emb|CAR43778.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227163644|gb|EEI48560.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 100 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + +VL Sbjct: 6 PVAYAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLDVLGIN 65 Query: 70 ISFFFD 75 I FF+ Sbjct: 66 IGNFFE 71 >gi|169335178|ref|ZP_02862371.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis DSM 17244] gi|169257916|gb|EDS71882.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis DSM 17244] Length = 172 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 8/90 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLE-SP 69 ++ +G RI+ R G+S +LGE +GI+ +Q+YE G +NR+ ++ I+ L +P Sbjct: 3 NLEIGNRIKQVRQEKGLSLRELGEIIGISGATIQRYENGLINRLKLPVIESIANALGVNP 62 Query: 70 ISFFF---DVSPTVCSD---ISSEENNVMD 93 F + T+ +D ISSE ++++ Sbjct: 63 SWLIFKSKNKYKTLVNDKNTISSENKDLLN 92 >gi|15901770|ref|NP_346374.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|15903805|ref|NP_359355.1| transcriptional activator [Streptococcus pneumoniae R6] gi|116517204|ref|YP_817168.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|168484245|ref|ZP_02709197.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|221232674|ref|YP_002511828.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|14973451|gb|AAK76014.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] gi|15459444|gb|AAL00566.1| Transcriptional activator [Streptococcus pneumoniae R6] gi|116077780|gb|ABJ55500.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|172042485|gb|EDT50531.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|220675136|emb|CAR69719.1| putative transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|332199372|gb|EGJ13449.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 287 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ V S++S+ Sbjct: 62 FNEQIEVKSNLSN 74 >gi|260219700|emb|CBA26545.1| hypothetical protein Csp_E36330 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 117 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 9/108 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+ ++LRR M+Q+++G +GI + V + E+G+ RL ++++ + I Sbjct: 13 SIGRTLQLRREATSMNQDEVGLAIGIGKEAVSRMERGITMPTVQRLAELADLYKCGIDEL 72 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 S T +D + + +M+ + PD +R I V+V Q+I E Sbjct: 73 LIESSTRTNDQAELISKIMNTL--PDA---DRAMI----VEVVQRIAE 111 >gi|261344508|ref|ZP_05972152.1| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282567418|gb|EFB72953.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 91 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 PV +G +I R G++ +L + +G++ QQ +YE+G+NR+ RL + Sbjct: 6 PVSKMIGSKITYYRKSNGITLNQLAKMIGVSQQQQSRYERGLNRINLDRLNQYA 59 >gi|213019782|ref|ZP_03335585.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994612|gb|EEB55257.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 7/128 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + V +GK+I R++ G +Q KL +G+T +++ +E G + I+ Sbjct: 17 NSEHIGSVSYELGKKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIA 76 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L + PTV + S E+ + + L + +I D ++R+K+ LV Sbjct: 77 GALSVNVIDLLP-GPTVLRENSWYEDEDKEIV------YLTKIHREIKDQELRKKLYPLV 129 Query: 124 RSIVSSEK 131 R + SEK Sbjct: 130 RFVYISEK 137 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 14/72 (19%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ +R+I +QE L +G T +++ YE+G + PI + Sbjct: 188 VGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDI--------------PIEILY 233 Query: 75 DVSPTVCSDISS 86 ++ T+ +I + Sbjct: 234 KIAKTLSVNIKA 245 >gi|260905597|ref|ZP_05913919.1| transcriptional regulator [Brevibacterium linens BL2] Length = 483 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR R G++ +LGE +G Q+ E G + L I++ L + ++ Sbjct: 18 LSIGRRIRFFRKQRGLTLTELGEQVGRAASQISTIENGKRETSVTLLSAIAKALHTEVAE 77 Query: 73 FFDVSP 78 D +P Sbjct: 78 LIDPTP 83 >gi|331646784|ref|ZP_08347887.1| putative helix-turn-helix-containing protein [Escherichia coli M605] gi|331045536|gb|EGI17663.1| putative helix-turn-helix-containing protein [Escherichia coli M605] Length = 153 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +RL R L + Q + + +G+T Q K+E G N AS ++ +SE+L Sbjct: 6 LRLNREKLKLKQSDIADYVGVTTQTYMKWENGKNEPKASHIKKLSEIL 53 >gi|210612865|ref|ZP_03289498.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] gi|210151386|gb|EEA82394.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] Length = 223 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI--------SEVL 66 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +E+L Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P + I E+ DF + D L N +F ++ + + I L+R I Sbjct: 71 SGEWKYIDHTEPYIMDIIKREQ----DFNVSLDYLSENEFFDNENEYRFYMETI-LIRYI 125 >gi|284921095|emb|CBG34160.1| putative phage DNA-binding protein [Escherichia coli 042] Length = 368 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++L RM +G+S E+L E +G T Q V K EKG R L+ IS L SF F Sbjct: 14 GDKLKLARMAVGLSCEELAEKIGKTKQFVSKLEKGC-RPSEQCLELISSALMIKSSFLF 71 >gi|170770018|ref|ZP_02904471.1| helix-turn-helix domain protein [Escherichia albertii TW07627] gi|170770180|ref|ZP_02904633.1| helix-turn-helix domain protein [Escherichia albertii TW07627] gi|291283193|ref|YP_003500011.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|301021345|ref|ZP_07185372.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|170120955|gb|EDS89886.1| helix-turn-helix domain protein [Escherichia albertii TW07627] gi|170121084|gb|EDS90015.1| helix-turn-helix domain protein [Escherichia albertii TW07627] gi|290763066|gb|ADD57027.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|299881567|gb|EFI89778.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|320657713|gb|EFX25502.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663395|gb|EFX30692.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. USDA 5905] gi|323956985|gb|EGB52712.1| helix-turn-helix protein [Escherichia coli H263] Length = 363 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++L RM +G+S E+L E +G T Q V K EKG R L+ IS L SF F Sbjct: 9 GDKLKLARMAVGLSCEELAEKIGKTKQFVSKLEKGC-RPSEQCLELISSALMIKSSFLF 66 >gi|253578754|ref|ZP_04856025.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849697|gb|EES77656.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 206 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 37/74 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+ I+ R+ M+QE+L + I+F ++KYE +L I++ L ++ Sbjct: 1 MNTGEIIKYFRLARNMTQEQLAQDAEISFSTLRKYEANERNPKYEQLSKIADALGISVNL 60 Query: 73 FFDVSPTVCSDISS 86 F D SD+ S Sbjct: 61 FMDFEIQSVSDLFS 74 >gi|251778373|ref|ZP_04821293.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082688|gb|EES48578.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 160 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 11/108 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR L ++ E+LG+ +G+ V+K+E G+ +G R I ++ ++SP Sbjct: 7 IRKRREELDLTYEQLGKIVGVGKSTVRKWETGI--IGNLRSDSI-----LALAKGLNLSP 59 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV---KVRQKIIELV 123 + + EE N DF T + L ++ +++D+ + +++ EL Sbjct: 60 STLMGWTEEE-NTYDFNLTKEETNLLEHYNKLNDLGKKEANKRVAELT 106 >gi|261344646|ref|ZP_05972290.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567562|gb|EFB73097.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE- 67 +P+ N+GK ++ R G++ +L + + ++ QQ+ +YE GVN + +L + LE Sbjct: 5 DPLSNNIGKMLKSYRRRTGLTGTELAKRINVSQQQISRYENGVNNITFDKLMILFNALEM 64 Query: 68 --SPISFFFD 75 I FF+ Sbjct: 65 NRYDIDIFFE 74 >gi|213019843|ref|ZP_03335645.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994591|gb|EEB55237.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 7/128 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + V +GK+I R++ G +Q KL +G+T +++ +E G + I+ Sbjct: 17 NSEHIGSVSYELGKKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIA 76 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L + PTV + S E+ + + L + +I D ++R+K+ LV Sbjct: 77 GALSVNVIDLLP-GPTVLRENSWYEDEDKEIV------YLTKIHREIKDQELRKKLYPLV 129 Query: 124 RSIVSSEK 131 R + SEK Sbjct: 130 RFVYISEK 137 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 14/72 (19%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ +R+I +QE L +G T +++ YE+G + PI + Sbjct: 188 VGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDI--------------PIEILY 233 Query: 75 DVSPTVCSDISS 86 ++ T+ +I + Sbjct: 234 KIAKTLSVNIKA 245 >gi|148556966|ref|YP_001264548.1| helix-turn-helix domain-containing protein [Sphingomonas wittichii RW1] gi|148502156|gb|ABQ70410.1| helix-turn-helix domain protein [Sphingomonas wittichii RW1] Length = 125 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R LG+ Q+++ L I + E G RV A L ++++ +++F Sbjct: 18 RLGDRLREARKYLGLKQDEVATYLKIPRTALTDIESGQRRVEAIELTRLAKLYRQSVAYF 77 Query: 74 F---DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + S ++ D++ V D +ST D +L+R+ Sbjct: 78 TGEDEASASLPVDVAHLARRVAD-LSTEDRAELSRF 112 >gi|168784916|ref|ZP_02809923.1| irep [Escherichia coli O157:H7 str. EC869] gi|261225385|ref|ZP_05939666.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261255362|ref|ZP_05947895.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|6318606|gb|AAF06963.1|AF157599_2 Eco0109IREP [Escherichia coli] gi|189374949|gb|EDU93365.1| irep [Escherichia coli O157:H7 str. EC869] gi|240119359|dbj|BAH79222.1| putative transcriptional regulator C.EcoO109I [Escherichia coli O157:H7] Length = 101 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G++QE+LG +GI ++ +YEKG + S + I+++L P+S+F Sbjct: 5 RLKKARLNAGLTQEQLGILVGIDECSASARMNQYEKGKHMPDFSLTKKIADLLNVPVSYF 64 Query: 74 F 74 + Sbjct: 65 Y 65 >gi|59801958|ref|YP_208670.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|240014865|ref|ZP_04721778.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240017310|ref|ZP_04723850.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|240081048|ref|ZP_04725591.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA19] gi|240113258|ref|ZP_04727748.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae MS11] gi|240115331|ref|ZP_04729393.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID18] gi|240118675|ref|ZP_04732737.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240121954|ref|ZP_04734916.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|240124219|ref|ZP_04737175.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID332] gi|240128889|ref|ZP_04741550.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae SK-93-1035] gi|260440172|ref|ZP_05793988.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae DGI2] gi|268597160|ref|ZP_06131327.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599338|ref|ZP_06133505.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268601016|ref|ZP_06135183.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268604387|ref|ZP_06138554.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268682845|ref|ZP_06149707.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268687271|ref|ZP_06154133.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043464|ref|ZP_06569180.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398766|ref|ZP_06642935.1| phage repressor protein [Neisseria gonorrhoeae F62] gi|59718853|gb|AAW90258.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|268550948|gb|EEZ45967.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583469|gb|EEZ48145.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268585147|gb|EEZ49823.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268588518|gb|EEZ53194.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268623129|gb|EEZ55529.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268627555|gb|EEZ59955.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291011927|gb|EFE03916.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610823|gb|EFF39929.1| phage repressor protein [Neisseria gonorrhoeae F62] Length = 251 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS 85 L ++Q KL E +G+T V Y G N + AS +++L+ P+S D S + +IS Sbjct: 28 LKLTQYKLAEAVGVTQSAVNHYLNGTNALNASIASQFAKILQIPVS---DFSLRLAEEIS 84 Query: 86 S 86 S Sbjct: 85 S 85 >gi|313885249|ref|ZP_07819001.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619940|gb|EFR31377.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 371 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I++ R G++QE L E LG+T V K+E+G L I++ + + F Sbjct: 7 VGPQIKIFRKQKGLTQEALAEALGVTVSAVSKWERGQTLPDLPTLLEIAQFFQISLDVLF 66 >gi|261346592|ref|ZP_05974236.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282565296|gb|EFB70831.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 114 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 VG +R R+ ++ E+LG+ L I+ QQV +YE+G+ + L + +L S FF Sbjct: 12 VGLFLRDARVNSSLTGEQLGKMLHISQQQVSRYERGITSISIENLDALLNMLGKDWSEFF 71 Query: 74 FDVSPTVCSDIS 85 F V +I+ Sbjct: 72 FKVIANYSDEIA 83 >gi|199598601|ref|ZP_03212017.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258509055|ref|YP_003171806.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|258540246|ref|YP_003174745.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|199590524|gb|EDY98614.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257148982|emb|CAR87955.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|257151922|emb|CAR90894.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] gi|328478983|gb|EGF48479.1| transcriptional regulator xre family protein [Lactobacillus rhamnosus MTCC 5462] Length = 103 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 N+GK + +R + ++ EKL E G++ + + E+G VN + +L I+ L+ + Sbjct: 4 NIGKLVHQQRRSMNLTIEKLAERSGVSVSLISRMERGDVNNISVKKLTDIARALDMQVGD 63 Query: 73 FFDVSPTVCSDISS 86 FF ++P + SDI++ Sbjct: 64 FF-IAPEM-SDINT 75 >gi|331002826|ref|ZP_08326340.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413315|gb|EGG92683.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] Length = 104 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R GM+Q +LGE +G+ Q + KYE+ + V LQ IS V E + + Sbjct: 4 IRKLRQSKGMTQRELGEVIGVKQQTICKYERANSNVSWDILQKISAVFEVSLDELIEEDL 63 Query: 79 TVC 81 C Sbjct: 64 EKC 66 >gi|239905667|ref|YP_002952406.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239795531|dbj|BAH74520.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 108 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+R R M+QE+L E G++ Q V + E+G ++ +S LE ++ FD Sbjct: 9 GKRVRSLRRAKDMTQEQLAERAGLSLQSVGEIERGRGNPTLVNIERLSAALEEDLASLFD 68 Query: 76 VS 77 + Sbjct: 69 LG 70 >gi|291550659|emb|CBL26921.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus torques L2-14] Length = 298 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I +R LGM+Q++L E L ++ + V K+E+G+ S + E+L I+ Sbjct: 4 VKIGKYIAGKRKALGMTQKQLAEKLNMSDKSVSKWERGICLPDVSVYMELCEILGISINE 63 Query: 73 FF 74 F Sbjct: 64 FL 65 >gi|229553142|ref|ZP_04441867.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229313438|gb|EEN79411.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|259650346|dbj|BAI42508.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 104 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 N+GK + +R + ++ EKL E G++ + + E+G VN + +L I+ L+ + Sbjct: 5 NIGKLVHQQRRSMNLTIEKLAERSGVSVSLISRMERGDVNNISVKKLTDIARALDMQVGD 64 Query: 73 FFDVSPTVCSDISS 86 FF ++P + SDI++ Sbjct: 65 FF-IAPEM-SDINT 76 >gi|227888084|ref|ZP_04005889.1| helix-turn-helix domain protein [Escherichia coli 83972] gi|227834930|gb|EEJ45396.1| helix-turn-helix domain protein [Escherichia coli 83972] gi|315295536|gb|EFU54862.1| helix-turn-helix protein [Escherichia coli MS 153-1] Length = 367 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++L RM +G+S E+L E +G T Q V K EKG R L+ IS L SF F Sbjct: 13 GDKLKLARMAVGLSCEELAEKIGKTKQFVSKLEKGC-RPSEQCLELISSALMIKSSFLF 70 >gi|255655872|ref|ZP_05401281.1| putative phage repressor [Clostridium difficile QCD-23m63] Length = 169 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|302671595|ref|YP_003831555.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396068|gb|ADL34973.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 370 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 8/89 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + + I+ R + ++QE+L E G+T V K+E G N L +++ Sbjct: 3 IKLNENIKKYRKSMNLTQEELAEAFGVTVGAVSKWESGANVPDILTLMQLAD-------- 54 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF +S V S N+ D D L Sbjct: 55 FFSISVDVLLGYSMSSKNIKDISDRLDAL 83 >gi|325068956|ref|ZP_08127629.1| XRE family transcriptional regulator [Actinomyces oris K20] Length = 80 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M ++K P +P G+R+R RR LG+SQEKL E + + + + E+G + + Sbjct: 1 MPTDRKPPLSPATGEFGRRVRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNI 60 Query: 60 QHISEVLES 68 I+ L++ Sbjct: 61 LRIAHALDT 69 >gi|302061586|ref|ZP_07253127.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato K40] Length = 117 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + + +R+R R LG+SQ ++ + +G+T + E G +V A+ L+ +S + Sbjct: 8 NEERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARKVEATELKRLSSIYRR 67 Query: 69 PISFFF 74 + + Sbjct: 68 SVEYLL 73 >gi|190570881|ref|YP_001975239.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190571713|ref|YP_001976071.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019313|ref|ZP_03335120.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|213019394|ref|ZP_03335200.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357153|emb|CAQ54565.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357985|emb|CAQ55448.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994816|gb|EEB55458.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995422|gb|EEB56063.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 325 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N G+ I+ R+I G +QE+L + L + Q+ YE+G ++ + RL I+E L Sbjct: 173 NGGQEIKKWRIIRGYTQEELAKKLNVGPSQIHHYEQGSVKILSERLWEIAEKL 225 >gi|119489478|ref|ZP_01622239.1| hypothetical protein L8106_27891 [Lyngbya sp. PCC 8106] gi|119454557|gb|EAW35704.1| hypothetical protein L8106_27891 [Lyngbya sp. PCC 8106] Length = 76 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 IR R LG+SQ KLGE LG+ FQ V +E G + + I + LE Sbjct: 12 IRTLRQRLGLSQRKLGEKLGVVFQTVNNWENGRTKPTRMAMMLIKQELE 60 >gi|213969499|ref|ZP_03397636.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] gi|301382711|ref|ZP_07231129.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato Max13] gi|302131409|ref|ZP_07257399.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925870|gb|EEB59428.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] Length = 115 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + + +R+R R LG+SQ ++ + +G+T + E G +V A+ L+ +S + Sbjct: 6 NEERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARKVEATELKRLSSIYRR 65 Query: 69 PISFFF 74 + + Sbjct: 66 SVEYLL 71 >gi|261885710|ref|ZP_06009749.1| hypothetical protein CfetvA_11544 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 207 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 35/61 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R G+SQ++ + GI + +Q YE G+ + ++ +++ + +++F+ Sbjct: 2 IGNKIRALREENGISQKEFAKEFGIAYGTLQSYEYGLTKPKTDFIEQLAKKFKIDVNYFY 61 Query: 75 D 75 D Sbjct: 62 D 62 >gi|251779099|ref|ZP_04822019.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083414|gb|EES49304.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 386 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 5 KKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K I N +D N + +IR R+ G+S +L +G++ Q + +YE G++ A + Sbjct: 3 KDILNVLDSNKIIPAKIREARISRGLSLSELSTKIGVSSQAISQYELGISTPSALTFIKL 62 Query: 63 SEVLESPISFFF 74 E L+ P +FF+ Sbjct: 63 VEELDFPSTFFY 74 >gi|255306892|ref|ZP_05351063.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 169 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|189219415|ref|YP_001940056.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] gi|189186273|gb|ACD83458.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] Length = 386 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +RL R+ G+SQ++L +G++ Q + E G+ + ++ VLE + F F SP Sbjct: 15 LRLARIGKGLSQKELAAKIGVSRQTIHAMENGLYVPNTAVALRLARVLEKTVEFLFPYSP 74 Query: 79 T-VCSDISSEEN 89 + +D+ +EN Sbjct: 75 DFIEADVLVDEN 86 >gi|58699616|ref|ZP_00374309.1| DNA-binding protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533867|gb|EAL58173.1| DNA-binding protein, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 74 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 29/36 (80%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 + +GK+I+ R+ G++Q +LG+ +G++++Q+Q+YE Sbjct: 1 MELGKKIKELRLYCGLTQTELGKKIGVSYRQIQRYE 36 >gi|293433714|ref|ZP_06662142.1| transcriptional repressor DicA [Escherichia coli B088] gi|291324533|gb|EFE63955.1| transcriptional repressor DicA [Escherichia coli B088] Length = 135 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 10/112 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ SP Sbjct: 6 LGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 65 Query: 74 F---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F D +P D NN +D + D ++ R + + + + +I EL Sbjct: 66 FGDEDKTP----DPPVALNNALDL--SEDEFEMLRLYRALPKSEQQAQISEL 111 >gi|313898798|ref|ZP_07832332.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956380|gb|EFR38014.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL Sbjct: 6 LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVL-------- 57 Query: 75 DVSPT 79 DV+P Sbjct: 58 DVTPN 62 >gi|325677861|ref|ZP_08157503.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110415|gb|EGC04589.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 180 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ IR R GM+QE L E +G++ Q V K+E G +L +S +L Sbjct: 1 MDIGENIRNARKKKGMTQEMLAEKMGVSRQAVSKWESGKGMPETEKLAELSALLGVSADR 60 Query: 73 FFDVSP 78 + P Sbjct: 61 LIGIRP 66 >gi|225390137|ref|ZP_03759861.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] gi|225043790|gb|EEG54036.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] Length = 194 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +GK IR R G++Q +L + I+ Q V K+E+G+ S L +SEVL Sbjct: 4 VKIGKLIRALRKDQGLTQRQLAAAMNISEQAVSKWERGLGFPDVSLLPELSEVL 57 >gi|160884700|ref|ZP_02065703.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483] gi|237717098|ref|ZP_04547579.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237721923|ref|ZP_04552404.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262405867|ref|ZP_06082417.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647828|ref|ZP_06725380.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294806223|ref|ZP_06765070.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|156109735|gb|EDO11480.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483] gi|229443081|gb|EEO48872.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229448792|gb|EEO54583.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262356742|gb|EEZ05832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636736|gb|EFF55202.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294446479|gb|EFG15099.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|295085704|emb|CBK67227.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 131 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 VG R+++ RM ++QE++GE L ++ K E G + +RL I+EVL S + F Sbjct: 9 VGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVLNMSALELF 68 Query: 74 FDVSPTV 80 + V Sbjct: 69 NKIDGNV 75 >gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07] Length = 169 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 14 GLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|332523396|ref|ZP_08399648.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332314660|gb|EGJ27645.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 113 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRIRL R+ G++QE+L E + V K E V L+ + + LE FF Sbjct: 10 ISKRIRLLRLNKGLTQEQLEEKADLGTNYVYKLENQSTNVKVKTLEKVMKALEVDFEEFF 69 Query: 75 DVS 77 D+S Sbjct: 70 DIS 72 >gi|223932872|ref|ZP_03624868.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223898453|gb|EEF64818.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 68 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 35/58 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI++ R+ LG + E+ G+ + V +EKG N + L+ I+++ ++P+ F Sbjct: 3 LGERIKVIRVSLGETMEQFGQRFNTSKGTVNNWEKGRNAPNKANLKKIADLSDNPMEF 60 >gi|303326709|ref|ZP_07357151.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] gi|302862697|gb|EFL85629.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] Length = 108 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRIR R+ G+SQEKL E GI+ + + + E+G + ++ ++ L + Sbjct: 7 ILLGKRIRELRVKHGLSQEKLSELSGISSRHISEMERGESNPSFQVMEQLTFALGVSMKE 66 Query: 73 FFD 75 FFD Sbjct: 67 FFD 69 >gi|210608450|ref|ZP_03287826.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] gi|210153061|gb|EEA84067.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] Length = 157 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 13/93 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVL------- 62 Query: 74 FDVSPT-----VCSDISSEENNVMDFISTPDGL 101 DV+P ++ E V F+ T + L Sbjct: 63 -DVTPNELLSGEWKYVNQSEKEVCQFLRTEERL 94 >gi|325917947|ref|ZP_08180117.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] gi|325535849|gb|EGD07675.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] Length = 113 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPIS 71 R+R R ++QE LG G+ + ++ +YEKGVN + +++ L P++ Sbjct: 11 ANRLRHARQKAELTQEALGVAAGLATEVARTRINRYEKGVNECDLRTAKRLADALGMPLA 70 Query: 72 FFFDVSPTVCSDISS 86 FF + V I + Sbjct: 71 AFFAETDEVADAIQA 85 >gi|325919786|ref|ZP_08181781.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] gi|325549742|gb|EGD20601.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] Length = 113 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPIS 71 R+R R ++QE LG G+ + ++ +YEKGVN + +++ L P++ Sbjct: 11 ANRLRHARQKAELTQEALGVAAGLATEVARTRINRYEKGVNECDLRTAKRLADALGMPLA 70 Query: 72 FFFDVSPTVCSDISS 86 FF + V I + Sbjct: 71 AFFAETDEVADAIQA 85 >gi|253995592|ref|YP_003047656.1| XRE family transcriptional regulator [Methylotenera mobilis JLW8] gi|253982271|gb|ACT47129.1| transcriptional regulator, XRE family [Methylotenera mobilis JLW8] Length = 114 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +G+ I RR+ G++Q+++ E LGI ++ V + E+GV RL ++E+ Sbjct: 12 QIGQSIAKRRLAAGLTQDQVSEKLGIGYEAVSRMERGVTIPTVIRLAELAEI 63 >gi|153940800|ref|YP_001391182.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936696|gb|ABS42194.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295319222|gb|ADF99599.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 221 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++Q++L E LGI Q + ++ KG ++ L H++E + PI +F Sbjct: 10 LYNLTQQELAEELGIKKQNINQWFKGSRKIPKKYLSHLNEKFKIPIDYF 58 >gi|197286053|ref|YP_002151925.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227356567|ref|ZP_03840954.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194683540|emb|CAR44391.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227163323|gb|EEI48250.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 117 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKKI V G RI++ R GM+ +LG LG++ Q ++E G + + +S Sbjct: 19 NKKISKIV----GARIKMLRQQHGMTGSELGALLGVSQQHQSRFENGECNIHVDVIYLLS 74 Query: 64 EVLESPISFFF 74 + + +++FF Sbjct: 75 YIFKVKLNYFF 85 >gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] Length = 169 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+SQE+L L + Q + K+E G++ + L ISE LE+P+S Sbjct: 14 GLSQEELAVKLNVVRQTISKWENGLSVPDSDMLISISEALETPVSVLL 61 >gi|37678457|ref|NP_933066.1| hypothetical protein VV0273 [Vibrio vulnificus YJ016] gi|37197197|dbj|BAC93037.1| hypothetical protein [Vibrio vulnificus YJ016] Length = 350 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+S + LGE +GI+ V+KYE + + L ++ L +FF Sbjct: 2 IGERIKRARAAAGLSMQALGEQVGISANMVKKYEHDQSMPSSGVLLKLATALSVRTEYFF 61 >gi|222102390|ref|YP_002546531.1| hypothetical protein Avi_9872 [Agrobacterium vitis S4] gi|221739634|gb|ACM40336.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 158 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-P 69 +D + IR R +S+ K+ LG++ +YE V+R+ SRL H+ EVL++ P Sbjct: 42 LDDKISTSIREARDKRSLSRSKIAPLLGLSNAVYHRYETSVSRLTVSRLIHLCEVLDATP 101 Query: 70 ISFFFDVSPTVCSD 83 +P + + Sbjct: 102 EEILAPAAPHLWGE 115 >gi|319937786|ref|ZP_08012189.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319807221|gb|EFW03835.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 124 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R I GMSQE+L + +T Q V K+E + +L +SE+ E + + T + Sbjct: 11 RNIRGMSQEELAALMDVTRQSVSKWETNQTYPDSEKLIRLSEIFEVSTDYLLKGTETEIT 70 Query: 83 D----------ISSEENNVMDFI 95 D +S+E N+++D + Sbjct: 71 DGQYNSQAGVQMSAEVNDILDHV 93 >gi|194292356|ref|YP_002008263.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193226260|emb|CAQ72209.1| putative transcriptional regulator, ATP-binding kinase, Helix-turn-helix motif, Shikimate kinase motif [Cupriavidus taiwanensis LMG 19424] Length = 320 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N NP +++G+R+R +R G++++ + G++ + + E G LQH Sbjct: 25 AANGAQKNPFLVSLGERVRQQRACRGLTRKAAAQAAGVSERHLANLEYGSGNASILVLQH 84 Query: 62 ISEVLESPIS-FFFDVSPT 79 ++E L+ ++ DV+ + Sbjct: 85 VAEALQCSLAGLLGDVTTS 103 >gi|326402562|ref|YP_004282643.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325049423|dbj|BAJ79761.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 94 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R+ G+SQE + E +G+ V E+G V L H+++ L+ + D Sbjct: 8 GANLRHYRLAAGLSQEAVAERMGVDRAHVSSMERGSQNVTLITLWHLADALKIQPADLLD 67 Query: 76 VSP 78 +P Sbjct: 68 TTP 70 >gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 112 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IR R+ G++QE L E G+ + + E+G L IS+ L++ IS+ Sbjct: 13 LGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGEKSPSVETLIDISKSLDTSISYIL 72 Query: 75 DV 76 +V Sbjct: 73 NV 74 >gi|227873147|ref|ZP_03991438.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227840978|gb|EEJ51317.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 300 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I +R LGM+Q++L E +G++ + V K+E+G+ S + +L I+ Sbjct: 4 VKIGKYISEKRKNLGMTQKQLAEKIGMSDKSVSKWERGICLPDVSLYFDLCSILGISINE 63 Query: 73 FFDVSPTVCSDI--SSEEN 89 F V +I SEEN Sbjct: 64 FLAGEDIVHENIEKKSEEN 82 >gi|283797040|ref|ZP_06346193.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075456|gb|EFE12820.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291528288|emb|CBK93874.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] gi|291534520|emb|CBL07632.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 207 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR LG++Q + E +G+T +Q+YE G ++ L+ +++ L + + Sbjct: 11 IGSRAKSRRQELGLNQPYVAEKMGVTASTIQRYEAGTIDNTKKMTLEGLADALHVSVEWL 70 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 71 KGETDEYETDIT 82 >gi|259909794|ref|YP_002650150.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965416|emb|CAX56948.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 124 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI R GM+Q ++ + L ++ Q VQ +E G R+ S L ++ +L + Sbjct: 15 GLGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAVARLLSVSLEDL 74 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-KVRQKII 120 +P EE P LQL +ID + K +QK+I Sbjct: 75 LGEAP--------EEKIARKRGPAPKWLQL---IEEIDSLPKAKQKMI 111 >gi|146297633|ref|YP_001181404.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411209|gb|ABP68213.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++++ R G++QE++ + LG+ + YE G+ + + L+++S + +S+F Sbjct: 10 IGQKLQEARKKAGLTQEQVADYLGVNKTLISYYENGIREISIATLRNLSNLYGYTMSYFL 69 Query: 75 D----VSPTVCSDISSEE 88 PT+ ++E Sbjct: 70 SDDEINEPTISFSFRADE 87 >gi|304438138|ref|ZP_07398081.1| transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368911|gb|EFM22593.1| transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 128 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + KRIR RR LG+SQE+L + +G + + K EKG N + S++ ++ L + Sbjct: 2 LEIYKRIRARREELGISQEELAKRMGYKSRSSINKIEKGENDIPQSKIVAFAQALRTTPE 61 Query: 72 FFFDVSPTVCSDISSEENNVMDFIS 96 SD S + N D S Sbjct: 62 ALMGWE---TSDTSPQSNTPSDPAS 83 >gi|223933764|ref|ZP_03625736.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223897568|gb|EEF63957.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 289 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R++ RR LG SQ++L E G+ Q Q+ + EKG GA L +++ L+ + +F Sbjct: 5 LATRLKNRRKELGWSQKELAE--GVCDQGQISRIEKGTYMPGADLLHALAKKLQVRMDYF 62 Query: 74 FDVSPT-VCSDI 84 FD + + SD+ Sbjct: 63 FDEEESEIVSDL 74 >gi|75761153|ref|ZP_00741144.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904571|ref|ZP_04068647.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74491352|gb|EAO54577.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855052|gb|EEM99635.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 194 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 N+GK I+ R G+S LGE +G++ Q + +YE G ++ L +I++ L P+ Sbjct: 4 NIGKVIKEIRKAKGISAFVLGEMIGVSQQAISQYENGKRKISFEVLNNIAKALNVPM 60 >gi|313905283|ref|ZP_07838650.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469894|gb|EFR65229.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 184 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 10 PVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D+N +G+RI+ R G++Q++L + +T + + E+G+ L H+ E+L Sbjct: 3 PIDLNKDIGRRIKDLRQRNGLTQQELADRAELTKGFISQLERGLGSPSVETLMHMIEILG 62 Query: 68 S-PISFFFD 75 S P FF D Sbjct: 63 SNPADFFKD 71 >gi|283479888|emb|CAY75804.1| HTH-type transcriptional regulator dicA; Repressor protein of division inhibition gene dicA [Erwinia pyrifoliae DSM 12163] Length = 137 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI R GM+Q ++ + L ++ Q VQ +E G R+ S L ++ +L + Sbjct: 28 GLGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAVARLLSVSLEDL 87 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-KVRQKII 120 +P EE P LQL +ID + K +QK+I Sbjct: 88 LGEAP--------EEKIARKRGPAPKWLQL---IEEIDSLPKAKQKMI 124 >gi|254447927|ref|ZP_05061391.1| helix-turn-helix domain protein [gamma proteobacterium HTCC5015] gi|198262353|gb|EDY86634.1| helix-turn-helix domain protein [gamma proteobacterium HTCC5015] Length = 363 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 17 KRIRLRRMILGMS-QEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +RIR R + GM+ QE + GI+ Q + KYEKG + ++RL +++VL +FF Sbjct: 4 ERIRRARALKGMTLQEVADQIGGISKQAISKYEKGKDAPNSTRLIQLADVLGVKPEYFF 62 >gi|260425999|ref|ZP_05779978.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260420491|gb|EEX13742.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 436 Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 27/55 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D G RIR RR ILGM Q +L I+ + E R+G L I+E+L Sbjct: 4 DTLTGSRIRERRNILGMKQAELARRASISASYLNLIEHNRRRIGGKLLLDIAEIL 58 >gi|154498443|ref|ZP_02036821.1| hypothetical protein BACCAP_02432 [Bacteroides capillosus ATCC 29799] gi|150272511|gb|EDM99696.1| hypothetical protein BACCAP_02432 [Bacteroides capillosus ATCC 29799] Length = 210 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 + + +RI R GMSQE+LGE LG++ Q V K+E G + Sbjct: 1 MELNERIAAARRAAGMSQEQLGEALGVSRQAVSKWESGQTK 41 >gi|150378300|ref|YP_001314894.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032847|gb|ABR64961.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 106 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R I G S E L G+T ++ + E GV+ V +RL+ I+ L+ P S Sbjct: 17 VDIGGAVRQSRQIKGYSVEDLSLTCGLTAAEITRIELGVD-VDPARLRRIAAALQVPTST 75 Query: 73 F 73 F Sbjct: 76 F 76 >gi|148985532|ref|ZP_01818721.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|148990157|ref|ZP_01821397.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|149007428|ref|ZP_01831071.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|168492078|ref|ZP_02716221.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|225857528|ref|YP_002739039.1| transcriptional activator [Streptococcus pneumoniae P1031] gi|307128154|ref|YP_003880185.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|147761000|gb|EDK67969.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|147922252|gb|EDK73373.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|147924551|gb|EDK75639.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|183573649|gb|EDT94177.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|225724859|gb|ACO20711.1| transcriptional activator [Streptococcus pneumoniae P1031] gi|301800717|emb|CBW33365.1| putative transcriptional regulator [Streptococcus pneumoniae OXC141] gi|306485216|gb|ADM92085.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|332071931|gb|EGI82419.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] gi|332072142|gb|EGI82628.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332199268|gb|EGJ13346.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 287 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|120536941|ref|YP_956999.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326775|gb|ABM21084.1| transcriptional regulator, XRE family [Marinobacter aquaeolei VT8] Length = 231 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P +G IR R G+S EKL E G++ + + K E+G V R + ++ E Sbjct: 14 PEP-GAAIGLAIRYARKAAGLSGEKLAEATGLSLRTIVKIEQGDGAVAFGRYKSVA--CE 70 Query: 68 SPISFFFDV 76 + + FDV Sbjct: 71 LGLEWMFDV 79 >gi|307131678|ref|YP_003883694.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] gi|306529207|gb|ADM99137.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] Length = 81 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 34/76 (44%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V K P +G+ IR RR LG+SQE L GI + + E+G V L Sbjct: 4 VSGKNDPAHALPLLGQTIRQRREFLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLR 63 Query: 62 ISEVLESPISFFFDVS 77 I++ LE + F + Sbjct: 64 IADALEWSLEQLFAAA 79 >gi|295402356|ref|ZP_06812311.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975629|gb|EFG51252.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 206 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +GK I R + G+S E+LG +G+T + +++YE G R+ R+ I++ L+ P + Sbjct: 8 IGKNIEKYRKLKGISAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIADALDIDPADLY 67 >gi|182684890|ref|YP_001836637.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|303260328|ref|ZP_07346298.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|303262476|ref|ZP_07348418.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|303265106|ref|ZP_07351019.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] gi|303266032|ref|ZP_07351927.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|303268036|ref|ZP_07353837.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|182630224|gb|ACB91172.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|301802633|emb|CBW35399.1| putative transcriptional regulator [Streptococcus pneumoniae INV200] gi|302636376|gb|EFL66869.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|302638494|gb|EFL68959.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|302642396|gb|EFL72742.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|302644473|gb|EFL74725.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|302645323|gb|EFL75557.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] Length = 287 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|169833072|ref|YP_001695308.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] gi|168995574|gb|ACA36186.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] Length = 287 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|303254120|ref|ZP_07340235.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] gi|302598953|gb|EFL65984.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] Length = 287 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|299144948|ref|ZP_07038016.1| putative prophage L54a, repressor protein [Bacteroides sp. 3_1_23] gi|298515439|gb|EFI39320.1| putative prophage L54a, repressor protein [Bacteroides sp. 3_1_23] Length = 131 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 VG R+++ RM ++QE++GE L ++ K E G + +RL I+EVL S + F Sbjct: 9 VGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVLNMSALELF 68 Query: 74 FDVSPTV 80 + V Sbjct: 69 NKIDGNV 75 >gi|148998484|ref|ZP_01825925.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|168576644|ref|ZP_02722510.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|307068564|ref|YP_003877530.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|147755677|gb|EDK62723.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|183577638|gb|EDT98166.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|306410101|gb|ADM85528.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 287 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|325262674|ref|ZP_08129410.1| DNA-binding protein [Clostridium sp. D5] gi|324031768|gb|EGB93047.1| DNA-binding protein [Clostridium sp. D5] Length = 545 Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ I RR +G++Q++L E LG+T + V K+E G S L+ ++ VLE + Sbjct: 6 GQFIARRRKAIGLTQKELAEKLGVTNKAVSKWETGGGMPDVSVLETLAGVLEVSV 60 >gi|261344511|ref|ZP_05972155.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567421|gb|EFB72956.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 95 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 VG +IR R GMS +KL E +GI+ Q +YE G + + +S++ PI FF Sbjct: 9 VGLKIRTLRESHGMSGKKLSELMGISQQHQSRYENGEVNIHVDTIYLLSQIFSVEPIYFF 68 Query: 74 --FD 75 FD Sbjct: 69 SEFD 72 >gi|218134838|ref|ZP_03463642.1| hypothetical protein BACPEC_02741 [Bacteroides pectinophilus ATCC 43243] gi|217990223|gb|EEC56234.1| hypothetical protein BACPEC_02741 [Bacteroides pectinophilus ATCC 43243] Length = 219 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+R + RR L ++Q + + +G+T +Q+YE G ++ L+ +SE L + + Sbjct: 24 IGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL 83 Query: 74 FDVSPTVCSDIS 85 + + +DI+ Sbjct: 84 KGETDSYETDIT 95 >gi|293373775|ref|ZP_06620121.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298482606|ref|ZP_07000791.1| prophage L54a [Bacteroides sp. D22] gi|292631265|gb|EFF49897.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298271313|gb|EFI12889.1| prophage L54a [Bacteroides sp. D22] Length = 131 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 VG R+++ RM ++QE++GE L ++ K E G + +RL I+EVL S + F Sbjct: 9 VGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVLNMSALELF 68 Query: 74 FDVSPTV 80 + V Sbjct: 69 NKIDGNV 75 >gi|293400018|ref|ZP_06644164.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306418|gb|EFE47661.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 108 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 45/75 (60%), Gaps = 5/75 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF- 72 +G+RIR R M+ ++L + +G + Q +Q+YE G +N + + +++ I+ +L + +F Sbjct: 4 IGERIRTARKKQNMTLDELAKKVGTSKQTIQRYETGIINNIPSDKIKAIAAILCTTPAFL 63 Query: 73 --FFDVSP-TVCSDI 84 + + SP T S+I Sbjct: 64 TGWTEKSPITTLSNI 78 >gi|288818209|ref|YP_003432557.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] gi|288787609|dbj|BAI69356.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] Length = 235 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 31/53 (58%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N+ R+R R LG+SQE+ GE +G + + +Q +E G ++ + L+ I+ Sbjct: 11 NIHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTF 63 >gi|169826912|ref|YP_001697070.1| hypothetical protein Bsph_1332 [Lysinibacillus sphaericus C3-41] gi|168991400|gb|ACA38940.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 180 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PIS 71 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L I EVL S P Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 72 FFFDVSP 78 FF D SP Sbjct: 61 FFDDESP 67 >gi|149021903|ref|ZP_01835890.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] gi|147929941|gb|EDK80929.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] Length = 287 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|325696215|gb|EGD38106.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 180 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 28/138 (20%), Positives = 61/138 (44%), Gaps = 20/138 (14%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQ+ L + +G++++ +Q +E GVN++ + Q ++ + + + Sbjct: 3 RIKEIRQKEGLSQQALAKKIGVSYRTIQNWENGVNQIKPDKAQQLANFFRVGVGYLLGYN 62 Query: 78 --------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI--- 126 I E ++ D+ T D + QID + + + E ++ Sbjct: 63 DEEKEKQITKAKKAIIKEIQDLSDYAKTNDIAK------QIDSIFQNEGLGEFFYNLKNV 116 Query: 127 ---VSSEKKYRTIEEECM 141 + S+K+Y E+E + Sbjct: 117 FFQIESKKEYSDAEKEAL 134 >gi|307709969|ref|ZP_07646416.1| transcriptional regulator [Streptococcus mitis SK564] gi|307619340|gb|EFN98469.1| transcriptional regulator [Streptococcus mitis SK564] Length = 287 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|225859710|ref|YP_002741220.1| transcriptional activator [Streptococcus pneumoniae 70585] gi|225721236|gb|ACO17090.1| transcriptional activator [Streptococcus pneumoniae 70585] Length = 287 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|218133873|ref|ZP_03462677.1| hypothetical protein BACPEC_01762 [Bacteroides pectinophilus ATCC 43243] gi|217991248|gb|EEC57254.1| hypothetical protein BACPEC_01762 [Bacteroides pectinophilus ATCC 43243] Length = 219 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+R + RR L ++Q + + +G+T +Q+YE G ++ L+ +SE L + + Sbjct: 24 IGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL 83 Query: 74 FDVSPTVCSDIS 85 + + +DI+ Sbjct: 84 KGETDSYETDIT 95 >gi|196048279|ref|ZP_03115456.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196021016|gb|EDX59746.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 184 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +IN+G++I + R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINIGEKIMVFRKGAGLTSKRLAELSDITPSMLSQIEKGITNPSLQTLKLISLALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF D ++EE Sbjct: 63 NFF------LEDTNTEE 73 >gi|149003610|ref|ZP_01828475.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS69] gi|147758342|gb|EDK65342.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS69] Length = 287 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|218459628|ref|ZP_03499719.1| hypothetical protein RetlK5_09084 [Rhizobium etli Kim 5] Length = 180 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVSPTVC 81 R G+S+ + LG++ +YE+ +++ +R+ H+ E+L PI F+ +P + Sbjct: 67 RQAQGLSRADVAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFMPIDMIFEAAPHLW 126 Query: 82 SDISSEENNVM 92 S E + + Sbjct: 127 GRTSEEAEDCL 137 >gi|194467035|ref|ZP_03073022.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454071|gb|EDX42968.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 115 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +GK I RR L M+QE+L E ++ + K E+G + A L +++ L P+ Sbjct: 5 IGKNITTRRHQLKMTQEQLAELSNLSVNYISKIERGTTPNISAKTLYRLAKGLNVPMENL 64 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 T ++I + + F++ Sbjct: 65 LKEETTYTTNIGPYQQQLETFLN 87 >gi|294794988|ref|ZP_06760123.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] gi|294454350|gb|EFG22724.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] Length = 142 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR RR+ LG+SQE L +G + + K E G + ++++ +EVL + ++ D Sbjct: 26 RIRERRIQLGLSQEDLAIKMGYKSRSTINKIESGAVDIARNKIEKFAEVLNTTPAYLMDW 85 Query: 77 SPT 79 + T Sbjct: 86 NDT 88 >gi|58040192|ref|YP_192156.1| hypothetical protein GOX1761 [Gluconobacter oxydans 621H] gi|58002606|gb|AAW61500.1| Hypothetical protein GOX1761 [Gluconobacter oxydans 621H] Length = 203 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 12/111 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIRL R + G+SQ++L + +GI+ V +E G R H+ + L S ++ Sbjct: 81 LELGRRIRLLREMAGLSQQQLADKVGISRSAVAFWETG-------RSGHVGKHLGS-LAQ 132 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVR-QKIIE 121 V P V ++ + TPD + + Q+D +K++ QK IE Sbjct: 133 VLGVEPEVL--LTGMAYKAIQATLTPDENTMLTLYRQLDPLIKLQAQKWIE 181 >gi|327389117|gb|EGE87463.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] Length = 287 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|308751810|gb|ADO45293.1| transcriptional regulator, XRE family [Hydrogenobacter thermophilus TK-6] Length = 311 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 31/53 (58%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N+ R+R R LG+SQE+ GE +G + + +Q +E G ++ + L+ I+ Sbjct: 87 NIHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTF 139 >gi|226311800|ref|YP_002771694.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226094748|dbj|BAH43190.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 183 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V K+IR R+ ++ + L E G + + + E+G + + + LQ I+E L PI++F Sbjct: 3 HVYKKIRALRIQQELTLKDLSEKSGFSVSFLSQVERGNSSLAITSLQKIAECLGVPITYF 62 Query: 74 FDV 76 F+V Sbjct: 63 FEV 65 >gi|219848414|ref|YP_002462847.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542673|gb|ACL24411.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 211 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 30/63 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++VGKR+R R MS L E G+ + E G S LQ ++ L+ PIS Sbjct: 19 HVDVGKRLRTLRERQRMSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPIS 78 Query: 72 FFF 74 FF Sbjct: 79 AFF 81 >gi|149012465|ref|ZP_01833496.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|147763521|gb|EDK70457.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] Length = 287 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|325262256|ref|ZP_08128994.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033710|gb|EGB94987.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 197 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK I R GM+Q+ L + + I+ + + K+E+GV S L+ +S++LE + Sbjct: 6 VGKLILTLRQEKGMTQKALADAMNISDRTISKWERGVGCPDVSLLRGLSDILEVDVEKIL 65 Query: 75 --DVSPTVCSDISSEENNVMDFISTPD 99 D+ P +DI + F PD Sbjct: 66 SGDLRP---NDIDRGNMKKIKFYVCPD 89 >gi|308068399|ref|YP_003870004.1| transcriptional regulator y4dJ [Paenibacillus polymyxa E681] gi|305857678|gb|ADM69466.1| Putative HTH-type transcriptional regulator y4dJ [Paenibacillus polymyxa E681] Length = 112 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 VG RIR R G+SQE LGE G F + + E+G V + I+ L+ + I F Sbjct: 10 VGARIRALRKEKGLSQESLGEKGGFHFSYIGQIERGEKNVSLINIAKIANALDVNLIQLF 69 Query: 74 FDVSPTVCSDISSEENNVMDFI-----STPDGLQLNRYFIQ 109 V+ + ++ E + + + S+P+ ++L R I+ Sbjct: 70 AYVNEDI--KVTKHEEGIQEIVNILQKSSPEKVRLARNVIR 108 >gi|222530442|ref|YP_002574324.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457289|gb|ACM61551.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 143 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS- 71 +N+GK+I R G+++ KL E G++ + + E+G+ + + L++I + L ++ Sbjct: 1 MNIGKKIAELREKYGLTRYKLSELSGVSQSALSEIERGIKQPTITTLENICKALNITLAD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FF + P + ++ S N V+ +P ++L F++ Sbjct: 61 FFAEKEPEIPPEVKSLINTVVRL--SPTQIRLLDSFLK 96 >gi|111222124|ref|YP_712918.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111149656|emb|CAJ61349.1| Putative transcriptional regulator [Frankia alni ACN14a] Length = 453 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 D +G+ IRL R+ SQ +LG LG + + + E G + + L+ I+ VL P Sbjct: 8 DPTIGETIRLARLAAHQSQRQLGATLGYSASAISRLETGKSSLDLDTLRSIANVLHIP 65 >gi|110346975|ref|YP_665793.1| hypothetical protein Meso_4162 [Mesorhizobium sp. BNC1] gi|110283086|gb|ABG61146.1| hypothetical protein Meso_4162 [Chelativorans sp. BNC1] Length = 167 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 + + +R RR +++E++G +GI + ++E+ ++ +RL H++E+L+ SPI Sbjct: 46 LSRYLRERRDAQNLNREQVGMMVGIHHEIYARHERAGAKLRVTRLLHLAELLDFSPIEAL 105 Query: 74 FDVSPTVCSDISSE 87 + +P + + E Sbjct: 106 YAAAPHLFGESEQE 119 >gi|215486344|ref|YP_002328775.1| transcriptional repressor DicA [Escherichia coli O127:H6 str. E2348/69] gi|254792795|ref|YP_003077632.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|260843554|ref|YP_003221332.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|261257017|ref|ZP_05949550.1| putative phage repressor protein CI [Escherichia coli O157:H7 str. FRIK966] gi|215264416|emb|CAS08774.1| predicted phage repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|254592195|gb|ACT71556.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|257758701|dbj|BAI30198.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|323977164|gb|EGB72251.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 135 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ SP Sbjct: 6 LGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 65 Query: 74 F---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F D +P D N+ +D + D L++ R + + + + +I EL Sbjct: 66 FGDEDKTP----DPPVALNSALDL--SEDELEMLRLYRALPKSEQQAQISEL 111 >gi|322377175|ref|ZP_08051667.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321281888|gb|EFX58896.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 287 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|212710973|ref|ZP_03319101.1| hypothetical protein PROVALCAL_02042 [Providencia alcalifaciens DSM 30120] gi|212686141|gb|EEB45669.1| hypothetical protein PROVALCAL_02042 [Providencia alcalifaciens DSM 30120] Length = 115 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I L R +S ++L L I+ QQV +YE+G+ + L + VL+ PI F Sbjct: 25 VGYEIYLLRKRRLLSGKELANLLNISQQQVSRYERGICNITIDMLIQVLNVLKMPIQDFL 84 Query: 75 D 75 D Sbjct: 85 D 85 >gi|168494718|ref|ZP_02718861.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] gi|183575348|gb|EDT95876.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] Length = 287 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|188992043|ref|YP_001904053.1| transcriptional regulator protein [Xanthomonas campestris pv. campestris str. B100] gi|167733803|emb|CAP52009.1| transcriptional regulator protein [Xanthomonas campestris pv. campestris] Length = 120 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQ-----QVQKYEKGVNRVGASRLQHI 62 P P G+R+R R+ GM+Q LG LG+ Q ++ +YE+G + + Sbjct: 7 PLPPAYTFGRRLREARLARGMNQAALGAVLGLEEQNSAAPRISRYERGDRMPDNESMAKL 66 Query: 63 SEVLESPISFFFDVSPTVCSDI 84 +E LE P+++F VS + I Sbjct: 67 AEALELPVAYFHAVSEPMAEAI 88 >gi|313206573|ref|YP_004045750.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312445889|gb|ADQ82244.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315023431|gb|EFT36439.1| helix-turn-helix domain protein [Riemerella anatipestifer RA-YM] gi|325335979|gb|ADZ12253.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 122 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +N+ +R+R R+ G SQE + + L I+ + E +V RL I+E+LE+ Sbjct: 2 NKIGVNI-RRLRERK---GFSQEYVAQELNISQASYARLENENTKVTVERLSKIAEILET 57 Query: 69 PISFFFD 75 I+ FF+ Sbjct: 58 DITEFFN 64 >gi|321272294|gb|ADW80179.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 325 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 7/128 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + V+ +GK+I R++ G +Q KL +G+T +++ +E G + I+ Sbjct: 17 NSEHIGSVNYELGKKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIA 76 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L + PTV + E+ + + L + +I D ++R+K+ LV Sbjct: 77 GALSVNVVDLLP-GPTVLRENGWYEDEDKEIV------YLTKIHREIKDQELRKKLYPLV 129 Query: 124 RSIVSSEK 131 R + SEK Sbjct: 130 RFVYISEK 137 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 14/72 (19%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ +R+I +QE L +G T +++ YE+G + PI + Sbjct: 188 VGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDI--------------PIEILY 233 Query: 75 DVSPTVCSDISS 86 ++ T+ +I + Sbjct: 234 KIAKTLSVNIKA 245 >gi|288947737|ref|YP_003445120.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898253|gb|ADC64088.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 273 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 18/85 (21%) Query: 9 NPVDI------NVGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQ 60 +PV+I ++G RIR RR LG+S KL E + I+ + YE G+ R G Sbjct: 149 SPVEIGRRLNRSIGARIRTRRKQLGLSLRKLSERIDGAISSVALNNYEIGLRRPG----- 203 Query: 61 HISEVLESPISFFFDVSPT--VCSD 83 I EV++ +S F+VSP +C D Sbjct: 204 -IEEVMQ--LSAIFEVSPAWLLCID 225 >gi|88858937|ref|ZP_01133578.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2] gi|88819163|gb|EAR28977.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2] Length = 170 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN + G+R+ R LG++Q L E +G+T Q + E NR + RL I+E L Sbjct: 11 MPNTI----GERVAAERKKLGLTQTALAEKVGVTQQAIGNIEN--NRSDSKRLADIAEAL 64 Query: 67 ESPISFF 73 ++ Sbjct: 65 GVTYTYL 71 >gi|331265721|ref|YP_004325351.1| transcriptional regulator, putative [Streptococcus oralis Uo5] gi|326682393|emb|CBZ00010.1| transcriptional regulator, putative [Streptococcus oralis Uo5] Length = 228 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEGLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYF 61 >gi|291527875|emb|CBK93461.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 205 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+R + RR L ++Q + + +G+T +Q+YE G ++ L+ +SE L + + Sbjct: 10 IGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + + +DI+ Sbjct: 70 KGETDSYETDIT 81 >gi|223933217|ref|ZP_03625208.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|330832261|ref|YP_004401086.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223898147|gb|EEF64517.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329306484|gb|AEB80900.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 126 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 12/137 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQ 60 + + KI P VG+RIR R + G Q + LG Q + K+E GVN +L Sbjct: 1 MADAKIKYP---EVGQRIRELREMRGFEQLDIANQLGYKSQSTISKWESGVNLPTGKKLI 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++E+L++ + SD S++ D T D ++ + D + + + I Sbjct: 58 LLAEMLDTSTDYILHGK---ISDTSTK-----DTTPTIDFKEMAAESMSYDGMPLNDEDI 109 Query: 121 ELVRSIVSSEKKYRTIE 137 +L+ SI+ + K R E Sbjct: 110 DLIASILETRMKNRDKE 126 >gi|315648384|ref|ZP_07901483.1| putative transcriptional regulator [Paenibacillus vortex V453] gi|315276078|gb|EFU39424.1| putative transcriptional regulator [Paenibacillus vortex V453] Length = 420 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 +RLR+ LGM+QE+L LG+++Q V K+E G Sbjct: 13 VRLRKQ-LGMTQEQLANGLGVSYQAVSKWENG 43 >gi|118578597|ref|YP_899847.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501307|gb|ABK97789.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 185 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 11/75 (14%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP I +G IR RRM LG+ Q ++ E +G+T V +E G LQ+ +++ Sbjct: 48 NP--ITIGDHIRKRRMDLGLLQREVAEIVGVTESSVWNWEHGTE----PELQYNPKIIN- 100 Query: 69 PISFFFDVSPTVCSD 83 F +P C D Sbjct: 101 ----FLGYAPFDCPD 111 >gi|312864220|ref|ZP_07724454.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100221|gb|EFQ58430.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 187 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RI+ R+ LG S E+ G + V +EKG N L+ I+ + +P+S Sbjct: 9 VGARIKDIRLSLGESMEQFGARFNTSKGTVNNWEKGRNIPNRKNLKEIALISGTPVSVLL 68 Query: 75 DVS--------PTVCSDISSEENNV-----MDFISTPDGLQLNRYFI 108 S P + +S+ + V M +TPD Q + YF+ Sbjct: 69 KGSTAHMPFRFPDLVDILSNPDYYVTICRDMIITNTPDNYQEDLYFM 115 >gi|218663686|ref|ZP_03519616.1| hypothetical protein RetlI_32695 [Rhizobium etli IE4771] Length = 172 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDVSPTVCSDISS 86 + + KL LGI+ Q +YE V+R+ SRL H+ EVL++ P +P + D + Sbjct: 54 LPRSKLAPLLGISEQVYGRYETRVSRLTVSRLIHLCEVLDATPEEIIAPAAPHLWGDTET 113 Query: 87 E 87 + Sbjct: 114 K 114 >gi|194397893|ref|YP_002038537.1| transcriptional activator [Streptococcus pneumoniae G54] gi|194357560|gb|ACF56008.1| transcriptional activator, putative [Streptococcus pneumoniae G54] Length = 287 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|119484521|ref|ZP_01619138.1| hypothetical protein L8106_02347 [Lyngbya sp. PCC 8106] gi|119457995|gb|EAW39118.1| hypothetical protein L8106_02347 [Lyngbya sp. PCC 8106] Length = 92 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 LG+SQEKL LG++FQ V ++E+G + LQ I + L Sbjct: 23 LGLSQEKLATQLGVSFQTVNRWERGRTQPSHLALQAIKQKL 63 >gi|318062605|ref|ZP_07981326.1| helix-turn-helix domain-containing protein [Streptomyces sp. SA3_actG] gi|318080566|ref|ZP_07987898.1| helix-turn-helix domain-containing protein [Streptomyces sp. SA3_actF] Length = 365 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R+ GMSQ L + + + + E G RV A L +++ L P++ F Sbjct: 7 IGERIAEARLAAGMSQGDLASKVALDRTAMVRIEAGDRRVSALELSRLAQALGVPVAHFL 66 Query: 75 DVSPTV 80 P Sbjct: 67 SRPPAA 72 >gi|325679912|ref|ZP_08159481.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108350|gb|EGC02597.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 135 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++ R G SQE L + L ++ Q V K+E G + A ++ IS F Sbjct: 1 MNIGDKLLFLRNRSGCSQENLADALDVSRQTVSKWELGQSLPDAEKIVAISNFFSVTTDF 60 Query: 73 FF-DVSP 78 D SP Sbjct: 61 LLRDTSP 67 >gi|160894719|ref|ZP_02075494.1| hypothetical protein CLOL250_02270 [Clostridium sp. L2-50] gi|156863653|gb|EDO57084.1| hypothetical protein CLOL250_02270 [Clostridium sp. L2-50] Length = 416 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 I VG I +R LGM+Q++L + L ++FQ + K+E G L+ ++ VL+ Sbjct: 5 IKVGNFIMGKRKSLGMTQQQLADKLKVSFQAISKWENGTTYPNIEILRDLAIVLD 59 >gi|119492954|ref|ZP_01623984.1| hypothetical protein L8106_26542 [Lyngbya sp. PCC 8106] gi|119452880|gb|EAW34054.1| hypothetical protein L8106_26542 [Lyngbya sp. PCC 8106] Length = 76 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 IR R LG+SQEK G+ LG+ FQ V +E G Sbjct: 12 IRTLRHRLGLSQEKFGQKLGVVFQTVNNWENG 43 >gi|322378022|ref|ZP_08052509.1| transcriptional regulator [Streptococcus sp. M334] gi|321281004|gb|EFX58017.1| transcriptional regulator [Streptococcus sp. M334] Length = 305 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +GKRIR R G+S+E G+ +T +Q+ + E G N ++L +I+++L PI Sbjct: 8 NLEIGKRIRTLRTEKGLSREAFCGDEKELTVRQLGRIETGNNLPSLAKLDYIAKILGVPI 67 Query: 71 SFFFD 75 S D Sbjct: 68 SQLID 72 >gi|289651209|ref|ZP_06482552.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 117 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS F Sbjct: 8 VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIK--------ISMAF 59 Query: 75 DVSP 78 DV+P Sbjct: 60 DVAP 63 >gi|169334227|ref|ZP_02861420.1| hypothetical protein ANASTE_00625 [Anaerofustis stercorihominis DSM 17244] gi|169258944|gb|EDS72910.1| hypothetical protein ANASTE_00625 [Anaerofustis stercorihominis DSM 17244] Length = 194 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 36/63 (57%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I +G I+ R+ M+Q+++G+ L ++ + + K+E G S L +SEVL++ I Sbjct: 3 NIKIGNLIKTLRIKKDMTQKEIGDMLNVSDKTISKWETGNGLPDISILSSLSEVLDTQID 62 Query: 72 FFF 74 + Sbjct: 63 YLL 65 >gi|118445169|ref|YP_879281.1| MerR family transcriptional regulator [Clostridium novyi NT] gi|118135625|gb|ABK62669.1| Transcriptional regulator, MerR family [Clostridium novyi NT] Length = 147 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +NVG+ IR R G++Q +L E + +Q+YEKG + L+ I++ L P+ Sbjct: 1 MNVGENIRKYRKEKGLTQSELAEKTHLATNTIQRYEKGHRQPTMQVLEKIADALGIPV 58 >gi|50122325|ref|YP_051492.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49612851|emb|CAG76301.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 136 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +GKRI R GM+Q ++ + L ++ Q VQ +E G R+ S L ++ VL Sbjct: 29 LGKRITALRKEAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAVARVL 80 >gi|71725303|ref|YP_272277.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558893|gb|AAZ38102.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 118 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS F Sbjct: 8 VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIK--------ISMAF 59 Query: 75 DVSP 78 DV+P Sbjct: 60 DVAP 63 >gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 269 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 114 GLSQQELAVKLNVVRQTISKWEQGLSVPDSEMLISISEVLETPVS 158 >gi|255100973|ref|ZP_05329950.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +GKRI++ R+ ++QE + + +G+T Q V E G + V + L I+ +L Sbjct: 8 IGKRIKIARIRTNLTQETVADKIGVTPQHVSNIETGNSSVSLTTLVAIANLL 59 >gi|83853906|gb|ABC47902.1| RstR-like protein [Vibrio phage CTX] Length = 114 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R+ + QE + + LGIT Q + K+EKG S+L+ +SE+ P D + Sbjct: 5 KIKQCRIEKNLKQEDVAKALGITTQTLLKWEKGDYEPKVSQLKKLSEIYGVPTCELIDDN 64 Query: 78 PTVCSD 83 +V S+ Sbjct: 65 ESVSSE 70 >gi|282599859|ref|ZP_05972144.2| MrfJ protein [Providencia rustigianii DSM 4541] gi|282567409|gb|EFB72944.1| MrfJ protein [Providencia rustigianii DSM 4541] Length = 106 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R MS ++L + LGI+ Q ++E G R+ + ISE+LE I+ Sbjct: 9 VGARIRTLRKDRRMSIQQLSKKLGISQQHQSRHELGDMRIHVDTIYSISEILELDIN--- 65 Query: 75 DVSPTVCSDISSEENNVM 92 + SD +S +N++ Sbjct: 66 ----ELISDFTSSNSNII 79 >gi|302336146|ref|YP_003801353.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319986|gb|ADK68473.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 324 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ RI R +LGM+Q L + LG++ + V ++E+GV + L+ ++ L+ +S Sbjct: 5 SLSSRISSHRRVLGMTQAALAQMLGVSDKAVSRWERGVGFPDVTLLEPLATALQIDLS 62 >gi|160937081|ref|ZP_02084444.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC BAA-613] gi|158439982|gb|EDP17730.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC BAA-613] Length = 119 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +GKRI+++R+ M+QEKL E G++ + E G +V L I+ LE Sbjct: 8 IGKRIKIQRIQREMTQEKLAELTGLSNPHISNVETGSTQVSLKSLIAIANALE 60 >gi|331674164|ref|ZP_08374924.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli TA280] gi|331068258|gb|EGI39653.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli TA280] Length = 229 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 G SQ +L LG++ Q VQ + G +RL +SE+ P S+F + SS Sbjct: 19 GWSQAELARKLGVSAQSVQYWTTGKTFPRGNRLAQLSEISGYPQSWF--LGEITSRQFSS 76 Query: 87 EENNVMDFISTPDGLQLNRYFIQI---DDVKVRQKIIELVRSI 126 +E + + D + N ++ D VR I++VRSI Sbjct: 77 KEKHQ----TRTDSVVFNVLDVEFSCGDGTHVRGDFIDVVRSI 115 >gi|295090228|emb|CBK76335.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10] Length = 136 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + G++++ R LG++Q++L E +G+T + + YE +R G R + ++E L ++ Sbjct: 1 MTFGEKVKAERTKLGLNQDELAEKIGVTRRVICSYENDKSRPRGTERYKKLAEALNVNVN 60 Query: 72 FFFDVSPTVCSDI 84 + +D+ Sbjct: 61 YLLSEDDAFIADV 73 >gi|315499237|ref|YP_004088041.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315417249|gb|ADU13890.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 267 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ IRL R ++ + +GIT ++++ E G + AS L +S +LE P+S Sbjct: 14 LSIGRNIRLFREQKRVTLSDMALGIGITSDRLKRIESGKLKPSASELLRVSRILERPVSD 73 Query: 73 FF 74 FF Sbjct: 74 FF 75 >gi|222106747|ref|YP_002547538.1| transcriptional regulator [Agrobacterium vitis S4] gi|221737926|gb|ACM38822.1| transcriptional regulator [Agrobacterium vitis S4] Length = 219 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L G++ + K E G LQ +S+ L Sbjct: 29 NNLEMAIGHEVRTFRKKLGITVADLATATGMSVGMLSKIENGNISASLGTLQSLSKALGV 88 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF EE F+ +G+ L R Sbjct: 89 PMTAFFK---------GYEEPRSASFVKAGEGVHLER 116 >gi|212633871|ref|YP_002310396.1| transcriptional regulator [Shewanella piezotolerans WP3] gi|212555355|gb|ACJ27809.1| Transcriptional regulator, putative [Shewanella piezotolerans WP3] Length = 108 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISE 64 NP+ + R++ R LG+SQ++LG LG+ ++ YEKG + + L+ +++ Sbjct: 7 NPLPL----RLKQARTALGISQKQLGIQLGMEPGTASARMNHYEKGKHTPDYATLKAMAD 62 Query: 65 VLESPISFFF 74 L P+++FF Sbjct: 63 ELGVPVAYFF 72 >gi|183600445|ref|ZP_02961938.1| hypothetical protein PROSTU_04021 [Providencia stuartii ATCC 25827] gi|188019929|gb|EDU57969.1| hypothetical protein PROSTU_04021 [Providencia stuartii ATCC 25827] Length = 91 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R RM G+S +L + ++ QQ+ +YE+GVN++ +L I L+ + Sbjct: 13 LGHHLRQARMKRGLSGHELANIINLSQQQISRYERGVNKLSLDKLIEIIVFLDIDVK--- 69 Query: 75 DVSPTVCSDISSEE 88 D+ + +++ E+ Sbjct: 70 DIVRIITTEVEHEK 83 >gi|306821038|ref|ZP_07454657.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550979|gb|EFM38951.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 164 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR R G SQEK G+ V E+G + L I+ LE +S F Sbjct: 6 VGQEIRKLRTSKGYSQEKFATVCGLDRTYVAAVERGKRNISIENLYKIANALEITLSELF 65 Query: 75 D----VSPTVCSDISSE 87 D + T+ DI E Sbjct: 66 DFGNPIQKTILLDIKGE 82 >gi|29171585|ref|NP_808631.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856078|gb|AAO59134.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] gi|320326981|gb|EFW82998.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882666|gb|EGH16815.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330945149|gb|EGH46863.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 117 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS F Sbjct: 8 VGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIK--------ISMAF 59 Query: 75 DVSP 78 DV+P Sbjct: 60 DVAP 63 >gi|266625083|ref|ZP_06118018.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288863021|gb|EFC95319.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 151 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R+ +Q+K+ ECLGIT K E+G + + +L ++E ++ +++ Sbjct: 53 MGNRLRQIRLEKNWTQDKMAECLGITKAFYGKIERGESSIALEKLALLNETMDIDLNYLI 112 Query: 75 D-----VSPTVCSDISSEENNVMD 93 V P D+ E+ M+ Sbjct: 113 TGETIPVLPINFQDVPREKRYSME 136 >gi|225575526|ref|ZP_03784136.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] gi|225037276|gb|EEG47522.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] Length = 124 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G+R++ R+ G+SQ +LGE + GIT Q + +YEK N ++ I++ L+ P Sbjct: 1 MTFGERVKELRLKKGLSQRELGERMGGITQQTIAQYEKSENYPKLETIRRIAKALDVPFD 60 >gi|323126423|gb|ADX23720.1| DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 110 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRIR R+ GM+QE+L E + K E + + L+ + L+ I+ FF Sbjct: 10 IAKRIRKIRLQRGMTQEQLEEKADLGVNYAYKLENLATNIKINTLEKVLNALDITITDFF 69 Query: 75 DVSPTVCSDISSEENNVMD 93 D +P S SSE +N+++ Sbjct: 70 D-TPNFSS--SSEIDNLIE 85 >gi|291542798|emb|CBL15908.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 117 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 30/52 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +GKRI++ R+ ++QEKL E +G++ + E G RV + + I+ L Sbjct: 8 IGKRIKIARIKADLTQEKLSEMVGVSPTHMSNVETGTTRVSLTTIVGIANAL 59 >gi|227536492|ref|ZP_03966541.1| hypothetical protein HMPREF0765_0736 [Sphingobacterium spiritivorum ATCC 33300] gi|227243569|gb|EEI93584.1| hypothetical protein HMPREF0765_0736 [Sphingobacterium spiritivorum ATCC 33300] Length = 123 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R ++ EKL E GI ++Q+ E G G S L I++ L+ +SF Sbjct: 58 LGQRVRDLRSERKLTMEKLAELSGIDYRQLSYIELGQTDPGLSTLHAIAKGLDITLSFLM 117 Query: 75 D 75 D Sbjct: 118 D 118 >gi|225571231|ref|ZP_03780229.1| hypothetical protein CLOHYLEM_07320 [Clostridium hylemonae DSM 15053] gi|225160062|gb|EEG72681.1| hypothetical protein CLOHYLEM_07320 [Clostridium hylemonae DSM 15053] Length = 233 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 8/79 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D NVGK I+ R+ ++ E+L + + + + KYEKG+ + + L+ I++V Sbjct: 2 AIDENVGKNIKKYRLAYKLTLEELAKKIHKSKSTMSKYEKGLISLDVATLEEIADV---- 57 Query: 70 ISFFFDVSPTVCSDISSEE 88 F +SP + EE Sbjct: 58 ----FQISPAYLLAVQDEE 72 >gi|320539287|ref|ZP_08038957.1| hypothetical protein SSYM_1010 [Serratia symbiotica str. Tucson] gi|320030679|gb|EFW12688.1| hypothetical protein SSYM_1010 [Serratia symbiotica str. Tucson] Length = 91 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 8/84 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R+ G+SQE+LG GI ++ +YE+G++ ++ VL P + Sbjct: 4 HRLKAARLKAGLSQERLGILAGIDEATASARMNQYERGIHTPDFELASRLASVLHVPACY 63 Query: 73 FF----DVSPTVCSDISSEENNVM 92 F+ D++ T+ S+E + + Sbjct: 64 FYAVEDDLAETILGYSDSQEKSTL 87 >gi|315222273|ref|ZP_07864179.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188606|gb|EFU22315.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 290 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESP 69 + I + R++ +R+ LG+SQ++L E G+ Q Q+ + EKG G+ L +S+ + Sbjct: 1 MSILLATRLKSKRLELGLSQKELAE--GVCEQGQISRMEKGKYMPGSDLLYSLSKKMNVT 58 Query: 70 ISFFFDVS 77 +++FFD S Sbjct: 59 MNYFFDDS 66 >gi|331646783|ref|ZP_08347886.1| putative helix-turn-helix-containing protein [Escherichia coli M605] gi|331045535|gb|EGI17662.1| putative helix-turn-helix-containing protein [Escherichia coli M605] Length = 86 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +RL R L + Q + + +G+T Q K+E G N AS ++ +SE+L Sbjct: 6 LRLNREKLKLKQSDIADYVGVTTQTYMKWENGKNEPKASHIKKLSEIL 53 >gi|153813072|ref|ZP_01965740.1| hypothetical protein RUMOBE_03480 [Ruminococcus obeum ATCC 29174] gi|153814732|ref|ZP_01967400.1| hypothetical protein RUMTOR_00947 [Ruminococcus torques ATCC 27756] gi|154502995|ref|ZP_02040055.1| hypothetical protein RUMGNA_00817 [Ruminococcus gnavus ATCC 29149] gi|317501372|ref|ZP_07959574.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|145847763|gb|EDK24681.1| hypothetical protein RUMTOR_00947 [Ruminococcus torques ATCC 27756] gi|149830874|gb|EDM85964.1| hypothetical protein RUMOBE_03480 [Ruminococcus obeum ATCC 29174] gi|153796349|gb|EDN78769.1| hypothetical protein RUMGNA_00817 [Ruminococcus gnavus ATCC 29149] gi|295107719|emb|CBL21672.1| Helix-turn-helix. [Ruminococcus obeum A2-162] gi|316897236|gb|EFV19305.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] Length = 209 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR L ++Q + E +G+T +Q+YE G ++ L+ +SE L + + Sbjct: 10 IGSRAKQRRTELNLTQPYIAEKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 RGETDEYETDIT 81 >gi|294664260|ref|ZP_06729632.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605970|gb|EFF49249.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 113 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPIS 71 R+R R ++QE LG G+ + ++ +YEKGVN + +++ L P++ Sbjct: 11 ANRLRHARQKAELTQEALGVAAGLAPEVARTRINRYEKGVNECDLRTAKRLADALGMPLA 70 Query: 72 FFFDVSPTVCSDISS 86 FF + V I + Sbjct: 71 AFFAETDEVADAIQA 85 >gi|153815596|ref|ZP_01968264.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|317501623|ref|ZP_07959815.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088574|ref|ZP_08337485.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847027|gb|EDK23945.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|295100105|emb|CBK89194.1| Predicted transcriptional regulator [Eubacterium cylindroides T2-87] gi|316896966|gb|EFV19045.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407531|gb|EGG87031.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] Length = 223 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 12/101 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI--------SEVL 66 +G+ I++ R GM Q++L +GI Q + K E+GVN L+ I +E+L Sbjct: 11 LGENIQIIRKHRGMKQQELANKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNELL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + P + I E+ DF + D L N +F Sbjct: 71 SGEWKYIDHTEPYIMDVIKREQ----DFNVSLDYLSENEFF 107 >gi|75910930|ref|YP_325226.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704655|gb|ABA24331.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 82 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G+ I+ R+++G++QE+ LG+TF V ++E G + +Q I +L+ Sbjct: 14 IGQFIQEIRLVMGLTQEEFAVILGVTFPTVNRWENGHTKPSKLAIQQIEALLD 66 >gi|24418792|sp|O59472|Y1808_PYRHO RecName: Full=Putative HTH-type transcriptional regulatory protein PH1808 Length = 315 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R G S +L LGI+ + +Q+YEKG + V + EV + P+ D Sbjct: 128 GKKLKALREEHGYSITELAGILGISRKSLQRYEKGESVVSLEVALRLEEVFDEPLVKPID 187 Query: 76 VSPTVCSDI--SSEENNVMD 93 V D+ +SE +N+++ Sbjct: 188 VLRARLKDVTLTSEPDNILE 207 >gi|237807907|ref|YP_002892347.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] gi|237500168|gb|ACQ92761.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] Length = 89 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 ++VG++IR R +G+S+ K E LG+ ++ YE G VG + L Sbjct: 4 APVSVGQKIRHIRETMGLSRPKFAELLGVPPTTLKNYELGYREVGGAFL 52 >gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 211 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IRL R I+G++Q +L E +G+ V ++E G + +Q +++ L P++ Sbjct: 7 IRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSNPPIKTIQRLAQTLGVPVTI 60 >gi|312967403|ref|ZP_07781618.1| helix-turn-helix family protein [Escherichia coli 2362-75] gi|312287600|gb|EFR15505.1| helix-turn-helix family protein [Escherichia coli 2362-75] Length = 255 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 G SQ +L LG++ Q VQ + G +RL +SE+ P S+F + SS Sbjct: 45 GWSQAELARKLGVSAQSVQYWTTGKTFPRGNRLAQLSEISGYPQSWF--LGEITSRQFSS 102 Query: 87 EENNVMDFISTPDGLQLNRYFIQI---DDVKVRQKIIELVRSI 126 +E + + D + N ++ D VR I++VRSI Sbjct: 103 KEKHQ----ARTDSVVFNVLDVEFSCGDGTHVRGDFIDVVRSI 141 >gi|223982789|ref|ZP_03633015.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM 12042] gi|223965236|gb|EEF69522.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM 12042] Length = 87 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 3/59 (5%) Query: 12 DIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D+N +G+RIR+ R ++QE+L E +G++ Q + E ++G +++ I++ L+ Sbjct: 3 DVNYVLLGRRIRILRKYRKLTQEQLAEVVGLSIQHLSNAENARTKLGFPKIKSIADTLD 61 >gi|293397473|ref|ZP_06641725.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291420052|gb|EFE93329.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 138 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 I + KR++ R+ G +QE+L E +GI + ++ YE G S + I+ +L+ Sbjct: 18 IMIPKRLKYARISNGYTQEQLAELVGIQGANSSSRLSSYEVGRTEPPFSLVVKIANLLDY 77 Query: 69 PISFFFDVSPTVCSDI 84 P +F+ + + SD+ Sbjct: 78 PEYYFYTIDDDLASDL 93 >gi|47093927|ref|ZP_00231665.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47017687|gb|EAL08482.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] Length = 194 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 13 IDMEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTP 72 Query: 71 SFFFD 75 FFD Sbjct: 73 KDFFD 77 >gi|306824522|ref|ZP_07457868.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433309|gb|EFM36279.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 228 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 34/57 (59%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + ++L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLEKILKVAKGYF 61 >gi|253991742|ref|YP_003043098.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638517|emb|CAR67138.1| putative transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783192|emb|CAQ86357.1| putative transcriptional regulator [Photorhabdus asymbiotica] Length = 95 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 V+ + KR++ R+ ++QEKLG GI +V +YE G ++ + S+VL Sbjct: 2 VNFMINKRLKAARLRANITQEKLGIAAGIDEKSARARVSQYENGTHQPTFEIMCAFSKVL 61 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 P +F+ V+ + + S ++++ P+ Sbjct: 62 NVPECYFYTVNDDLADIVLSIHQILVNYKHAPEN 95 >gi|160935696|ref|ZP_02083071.1| hypothetical protein CLOBOL_00586 [Clostridium bolteae ATCC BAA-613] gi|158441440|gb|EDP19150.1| hypothetical protein CLOBOL_00586 [Clostridium bolteae ATCC BAA-613] Length = 112 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++++ R+ +G +Q+++ + LG+T YE G + ++L+ ++ +L + SF Sbjct: 1 MGFSEQLKKARVSMGYTQQQVADALGLTASTYCGYETGKRQPDVAKLKQLARILNTTGSF 60 Query: 73 FFDVSP--TVCSDISSEENNVM 92 + P C N++M Sbjct: 61 LLETEPVQNTCRPDPGSGNDLM 82 >gi|160946089|ref|ZP_02093303.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270] gi|158447821|gb|EDP24816.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270] Length = 207 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 36/71 (50%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q +L + LG+ V +E+ N + ++E+ + P+S+FFD + + + Sbjct: 1 MTQAQLAKKLGVAPTTVSSWERNDNNPLMDNITLMAEIFDVPVSYFFDKKDGIIVNEPAI 60 Query: 88 ENNVMDFISTP 98 E +V + TP Sbjct: 61 EYSVSPVLKTP 71 >gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 38/63 (60%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G +IR R G++ ++LG+ ++ + + E+G + V + L+ I+ LE+ +++F Sbjct: 8 DIGNKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTSAVSITALEKIAHALETELAYF 67 Query: 74 FDV 76 F + Sbjct: 68 FTL 70 >gi|237748892|ref|ZP_04579372.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229380254|gb|EEO30345.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 110 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 11/90 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ++LG GI ++ +YEKGV++ + ++ VL P+++ Sbjct: 14 RRLKDARIKAGLSQKRLGIEAGIDEFVASTRINRYEKGVHQADEATAILLAHVLGVPLAY 73 Query: 73 FFDVSPTV-------CSDISSEENNVMDFI 95 F+ ++ C ++ N V+D + Sbjct: 74 FYAEDDSLAEMILGFCQLNRADRNEVLDLV 103 >gi|149925664|ref|ZP_01913928.1| transcriptional regulator, XRE family protein [Limnobacter sp. MED105] gi|149825781|gb|EDM84989.1| transcriptional regulator, XRE family protein [Limnobacter sp. MED105] Length = 93 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR LG++Q++LGE LGI + V EK + +RL + + L+ +S + P Sbjct: 15 IRTRRRELGLTQKQLGERLGIDQRTVSSLEKNPGSISVNRLFAVLDALQ--VSLYSSTDP 72 >gi|92118817|ref|YP_578546.1| hypothetical protein Nham_3355 [Nitrobacter hamburgensis X14] gi|91801711|gb|ABE64086.1| protein of unknown function DUF955 [Nitrobacter hamburgensis X14] Length = 354 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ L RM + L E G+ + + E G N + ++ +S+ L P++FF D Sbjct: 5 RRLSLARMRRRKTARALAEETGLAADTISRLEAGSNAPDETTIEKLSKALGFPVAFFMDA 64 Query: 77 SP 78 P Sbjct: 65 DP 66 >gi|148993187|ref|ZP_01822753.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|147928161|gb|EDK79179.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|332072036|gb|EGI82523.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] Length = 215 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|148258862|ref|YP_001243447.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411035|gb|ABQ39541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 112 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ R + G+SQ + + LG+ + + E G RV A L ++E + +++ Sbjct: 1 MQIAERLKEARKLAGLSQSHVAKMLGLHRPSISEMEAGNRRVSADELARLAETYDVSVAW 60 Query: 73 FFDVSP 78 +P Sbjct: 61 LLGEAP 66 >gi|14591561|ref|NP_143643.1| hypothetical protein PH1808 [Pyrococcus horikoshii OT3] gi|3258244|dbj|BAA30927.1| 380aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 380 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R G S +L LGI+ + +Q+YEKG + V + EV + P+ D Sbjct: 193 GKKLKALREEHGYSITELAGILGISRKSLQRYEKGESVVSLEVALRLEEVFDEPLVKPID 252 Query: 76 VSPTVCSDI--SSEENNVMD 93 V D+ +SE +N+++ Sbjct: 253 VLRARLKDVTLTSEPDNILE 272 >gi|256389247|ref|YP_003110811.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355473|gb|ACU68970.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 220 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R RR+ LGM+Q +LGE +G++ +Q++E + RV + H+ V + + D P Sbjct: 105 LRNRRLALGMAQGELGELVGVSRDSIQRWE--LVRVPPRPIAHV--VWAQKLGYSLDTRP 160 Query: 79 TV 80 Sbjct: 161 VA 162 >gi|85059869|ref|YP_455571.1| hypothetical protein SG1891 [Sodalis glossinidius str. 'morsitans'] gi|84780389|dbj|BAE75166.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans'] Length = 97 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 K++++ R GM+Q + E LGI ++ YE GV VGA Sbjct: 5 KKLKVIRQAEGMTQSEFAEALGIGLGTIKNYESGVKGVGA 44 >gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 169 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQ++L L + Q V K+E+G++ + L +SEVLE+P+S Sbjct: 14 GLSQQELAVRLNVVRQTVSKWEQGLSVPDSDVLISLSEVLETPVS 58 >gi|91783413|ref|YP_558619.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687367|gb|ABE30567.1| Predicted transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 152 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I RR LGM+QE+L E + I + + E+G RL I+E LE ++ Sbjct: 32 SIGAAIAARRKALGMTQERLSELIQIEQSSLSRIERGTLIPSLERLASIAEELECGLADL 91 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 F V D ++ + + + TP Sbjct: 92 FYVGGVNSHDRAARVHEKLSHL-TPS 116 >gi|83310829|ref|YP_421093.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945670|dbj|BAE50534.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 164 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R+ ++QE+L E + T + + E+G L I++ L++P++FFF Sbjct: 52 IGLKVRAARLKRSLTQEQLAERVDKTAESISNIERGHVTPPLDTLARIAQELDTPMTFFF 111 Query: 75 D 75 + Sbjct: 112 E 112 >gi|116751481|ref|YP_848168.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700545|gb|ABK19733.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 432 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G R++ R G+SQ +L + +G+T + + E + L ++EVL IS Sbjct: 251 IDLGLRLKELRTKRGISQTELAKSVGVTPSTISQVESNLIYPSLPALMKMAEVLSVDISS 310 Query: 73 FFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIEL 122 FF ++ S+ E+ + F P+G R ID D KV +IE+ Sbjct: 311 FFQERLAGKKKFVFSAMESLQVKFADFPEGSIYARALTPIDSDFKVEPYLIEI 363 >gi|307330591|ref|ZP_07609731.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306883747|gb|EFN14793.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 402 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 5/106 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P D ++G RIR R I S +LG ++ Q+ + E G AS L ++ L Sbjct: 5 MPETSDQHIGARIRELRAIRDFSLAELGRRAHVSTSQLSRVENGEQPASASVLSAVARAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 IS P I + + +D + +P G L + I++DD Sbjct: 65 AVDISVLHG-QPY----IKILQKDQLDAMVSPIGSALEAWDIELDD 105 >gi|212712199|ref|ZP_03320327.1| hypothetical protein PROVALCAL_03284 [Providencia alcalifaciens DSM 30120] gi|212684945|gb|EEB44473.1| hypothetical protein PROVALCAL_03284 [Providencia alcalifaciens DSM 30120] Length = 99 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + +VL Sbjct: 8 PVACAVGQKIKSLRKAQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVRVLKVLGVN 67 Query: 70 ISFFF 74 + FF Sbjct: 68 MGEFF 72 >gi|315266122|gb|ADT92975.1| putative phage repressor [Shewanella baltica OS678] Length = 240 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 20/81 (24%), Positives = 42/81 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR +R LG++Q+ LG +G++ V ++EK + L +++ L+ +S+ Sbjct: 12 TLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSWL 71 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + V + ++E D Sbjct: 72 LNGQVAVKPESNAEWAGGFDL 92 >gi|302875300|ref|YP_003843933.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688151|ref|ZP_07630597.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578157|gb|ADL52169.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 119 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 RI+ RR+ LG+S + + + GI+ Q+YE G + +G +L ++++L++ S+ Sbjct: 12 RIKNRRIELGLSYQDMQDATGISKSTWQRYETGFIKNLGIDKLDIVAKILQTTPSYL 68 >gi|294813464|ref|ZP_06772107.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] gi|294326063|gb|EFG07706.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] Length = 457 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 30/64 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R G+SQE+L E G++ VQK E+G V L I+ L S F Sbjct: 42 IGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 101 Query: 75 DVSP 78 P Sbjct: 102 VAGP 105 >gi|255282221|ref|ZP_05346776.1| LexA repressor [Bryantella formatexigens DSM 14469] gi|255267169|gb|EET60374.1| LexA repressor [Bryantella formatexigens DSM 14469] Length = 206 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR +R +GM+QE+L LG + + K E G N + S++ ++ L + +S+ Sbjct: 4 IGIRIREQREAIGMTQEELASKLGYKNKSSIAKIETGANDIVQSKVIEFADALNTTVSYL 63 Query: 74 FDVSPT 79 T Sbjct: 64 MGWEKT 69 >gi|86137308|ref|ZP_01055885.1| transcriptional regulator, putative [Roseobacter sp. MED193] gi|85825643|gb|EAQ45841.1| transcriptional regulator, putative [Roseobacter sp. MED193] Length = 432 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D G RIR RR+ILG+ Q +L GI+ + E R+G L +++VL Sbjct: 4 DTLTGSRIRERRLILGIRQAELARKAGISASYLNLIEHNRRRIGGKLLVALAQVL 58 >gi|325662288|ref|ZP_08150903.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086094|ref|ZP_08335177.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471540|gb|EGC74761.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407017|gb|EGG86522.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 192 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R + + L E G++ + ++E+G+ + L+ I++VLE +S FF Sbjct: 7 IGFRIKELRTEKKYTLKYLSEQTGLSIGFLSQFERGLTSIAIDSLEKIAQVLEVELSSFF 66 Query: 75 DVS 77 D+S Sbjct: 67 DLS 69 >gi|257468157|ref|ZP_05632253.1| SOS-response transcriptional repressor [Fusobacterium ulcerans ATCC 49185] gi|317062443|ref|ZP_07926928.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688119|gb|EFS24954.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 205 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G++I L R M+Q++L E L I+ Q + YE + L +I+++ PI F Sbjct: 3 NLGQKIMLLRKKENMTQDELAEKLNISKQSILNYETEKRLIPIDVLSNIAKLFNFPIENF 62 Query: 74 F 74 F Sbjct: 63 F 63 >gi|322375904|ref|ZP_08050415.1| putative repressor protein [Streptococcus sp. C300] gi|321279172|gb|EFX56214.1| putative repressor protein [Streptococcus sp. C300] Length = 228 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYF 61 >gi|312126619|ref|YP_003991493.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776638|gb|ADQ06124.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 118 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R G +QE++ + LGIT +Q+ YE G + + LQ ++ + ++ Sbjct: 9 IGEKLRELRKQRGFTQEQVAKYLGITQEQLSYYETGAREISVATLQALARLYGCDYNYLL 68 >gi|312864338|ref|ZP_07724571.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100059|gb|EFQ58270.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 291 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + + + +R R LG SQEKL E L ++ Q + K+E G S LQ I+++ + Sbjct: 1 MTLDQTLRHYRKELGFSQEKLAEKLHVSRQAITKWETGGGLPDISNLQAIAQLFQ 55 >gi|167755999|ref|ZP_02428126.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] gi|167703991|gb|EDS18570.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] Length = 384 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +++GKRI+ R G+SQE+L L I+ Q + K+E +N ++ +++ LE Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALE 55 >gi|29028568|ref|NP_803258.1| cI-like repressor [Staphylococcus phage 11] gi|57651248|ref|YP_185213.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|66395526|ref|YP_239894.1| ORF018 [Staphylococcus phage 42E] gi|88195767|ref|YP_500576.1| phage repressor protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|18920492|gb|AAL82233.1| cI-like repressor [Staphylococcus phage 11] gi|57285434|gb|AAW37528.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|62636019|gb|AAX91130.1| ORF018 [Staphylococcus phage 42E] gi|87203325|gb|ABD31135.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|315193399|gb|EFU23796.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus CGS00] Length = 239 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L ++Q++LGE L + YE G L I+ +L I F Sbjct: 10 IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDLF 69 Query: 75 DVSPTVCSDISS 86 +DI+S Sbjct: 70 PTRNNKKNDITS 81 >gi|260161306|emb|CAZ39274.1| hypothetical protein [Streptococcus suis] gi|260161745|emb|CAZ39290.1| hypothetical protein [Streptococcus suis] Length = 136 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + G++++ R LGMSQ++L +G+T + + YE +R G R + ++E L ++ Sbjct: 1 MTFGEKVKAERTKLGMSQDELAAKIGVTRRIIGSYENDKSRPRGMERYKKLAESLNVNVN 60 Query: 72 FFFDVSPTVCSDI 84 + +D+ Sbjct: 61 YLLSEDDAFIADV 73 >gi|291521395|emb|CBK79688.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 45 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 28/40 (70%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 + +GK I +R LGM+Q ++ E LG++ + V K+E+GV+ Sbjct: 4 VKIGKYIAGKRKALGMTQAQVAEKLGMSNKSVSKWERGVS 43 >gi|326204877|ref|ZP_08194730.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984926|gb|EGD45769.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 108 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R +G+++E+ E L ++ V + E+G ++ + +IS+ L + + Sbjct: 6 IGKRIRDERESIGLTRERFAELLELSINFVGQIERGEKKMSLETITNISDCLHVSLDYLI 65 Query: 75 DVSP 78 +P Sbjct: 66 KGTP 69 >gi|293115567|ref|ZP_05792094.2| putative helix-turn-helix protein [Butyrivibrio crossotus DSM 2876] gi|292809300|gb|EFF68505.1| putative helix-turn-helix protein [Butyrivibrio crossotus DSM 2876] Length = 120 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +I +GKR+R R+ + + + ++ + LG+T + +K E G+ + + +VL Sbjct: 18 ANIQIGKRLREARLNMNLEKSEIADVLGVTVEHYRKLEAGITGIS------VDKVLTLYH 71 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + D + + + S ++ N+ +++ Q N +F Sbjct: 72 KYGIDPTYLITGESSMKDFNLDYYVANSTKEQRNEFF 108 >gi|282909328|ref|ZP_06317144.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958772|ref|ZP_06376218.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] gi|282326896|gb|EFB57193.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789812|gb|EFC28634.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 239 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L ++Q++LGE L + YE G L I+ +L I F Sbjct: 10 IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDLF 69 Query: 75 DVSPTVCSDISS 86 +DI+S Sbjct: 70 PTRNNKKNDITS 81 >gi|117922291|ref|YP_871483.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117614623|gb|ABK50077.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 103 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 8/73 (10%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQH 61 KI NP+ + R++ R G+SQ++LG LG+ ++ +YEKG + L+ Sbjct: 4 KIINPLPL----RLKQARTAKGISQKQLGIQLGMEVGTASARMNQYEKGKHTPDYQTLKA 59 Query: 62 ISEVLESPISFFF 74 I++ L P+++FF Sbjct: 60 IADELGVPVAYFF 72 >gi|225870539|ref|YP_002746486.1| phage repressor-like protein [Streptococcus equi subsp. equi 4047] gi|225699943|emb|CAW93888.1| putative phage repressor-like protein [Streptococcus equi subsp. equi 4047] Length = 232 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++ R+ +SQE+LG+ LG+ + +EK NR + + + + P +F+ Sbjct: 6 GIQLKTARLSRHISQEQLGQLLGVNKMTISNWEKEKNRPNQKHFEELVSIFQLPAEYFY 64 >gi|160937793|ref|ZP_02085152.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] gi|158439232|gb|EDP16985.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ RR + MSQE + + LGI+ Q V K+E G + + L ++ + E IS Sbjct: 1 MALSENIKARRTQIKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELASLFEMSISE 60 Query: 73 FFD 75 D Sbjct: 61 LVD 63 >gi|261369061|ref|ZP_05981944.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568797|gb|EFB74332.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 90 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGKR++ R +G SQ K+ + LG T + +YE G + + ++ + + + Sbjct: 2 IEVGKRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLDY 61 Query: 73 FF 74 F Sbjct: 62 IF 63 >gi|260868456|ref|YP_003234858.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|257764812|dbj|BAI36307.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] Length = 229 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 RI + G SQ +L LG++ Q VQ + G + +L +S + P S+F D Sbjct: 10 RIAMMLKTKGWSQAELARKLGVSAQSVQYWTTGKTFPRSDKLAQLSVISGYPQSWFLGED 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI---DDVKVRQKIIELVRSI 126 S T S+E+++ + D + N ++ D VR +I++VRSI Sbjct: 70 ASSTFS---SAEKHHTRE-----DSVVFNVLDVEFSCGDGTHVRGDLIDVVRSI 115 >gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] Length = 347 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R+ G+S KL + +G++ + KYEKGV + L ++ L+ SF Sbjct: 1 MSIGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVITPDSQMLIRLARALDVKPSF 60 Query: 73 FF 74 F Sbjct: 61 FL 62 >gi|268590841|ref|ZP_06125062.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313624|gb|EFE54077.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 97 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 V + +G ++ RR ++G++ +L L I+ QQV +YE+G N + L I + LE Sbjct: 12 VTVYIGSFLKHRRKVVGLTGSQLASRLKISQQQVSRYERGKNAITIQGLLDILQALE 68 >gi|210634420|ref|ZP_03298108.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] gi|210158823|gb|EEA89794.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] Length = 351 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 37/66 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR LGM+QE++ + LG++ V K+E+G+ + + ++ + E+ + Sbjct: 1 MHISEIIRSRRRELGMTQEQVAQRLGVSAPAVNKWERGICYPDITLIPSLARLFETDANT 60 Query: 73 FFDVSP 78 P Sbjct: 61 LLSFEP 66 >gi|146281019|ref|YP_001171172.1| XRE family transcriptional regulator [Pseudomonas stutzeri A1501] gi|145569224|gb|ABP78330.1| putative transcriptional regulator, XRE family [Pseudomonas stutzeri A1501] Length = 89 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 35/70 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+++R RR+ G++Q L + GIT Q+V EKG VG + + L+ Sbjct: 12 ITTRLGEQLRQRRLNRGLTQATLADLAGITRQKVIAIEKGDLSVGMAAYARVLGALDCEF 71 Query: 71 SFFFDVSPTV 80 S PT+ Sbjct: 72 SVVPSAMPTL 81 >gi|325264127|ref|ZP_08130859.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324030611|gb|EGB91894.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 201 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ RR L MSQE + + LGI+ Q V K+E G + + L ++ + E IS Sbjct: 1 MALSENIKARRTQLKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELAFLFEISISE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 D T + +++E D Sbjct: 61 LVD-PQTYAEEQAAQEQKFRD 80 >gi|293402557|ref|ZP_06646692.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304071|gb|EFE45325.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 173 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 28/45 (62%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE+L L + Q + K+E G++ + L ISE+ E+P+S Sbjct: 14 GLSQEELAIKLNVVRQTISKWENGLSVPDSDMLISISEIFETPVS 58 >gi|187921133|ref|YP_001890165.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719571|gb|ACD20794.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 107 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G R++ R+ G+SQ++LG G + ++ +YE GV++V + ++ VL+ P++ Sbjct: 10 GTRLKEARLEAGLSQKRLGIEAGLDPFVASTRINRYELGVHKVDHTFASRLATVLKVPVA 69 Query: 72 FFF 74 F + Sbjct: 70 FLY 72 >gi|291526890|emb|CBK92476.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 97 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE---SPIS 71 +G RI+ R+ ++QE++ + +G++ Q+ + E G N + L ++E+L+ I+ Sbjct: 5 LGSRIKALRIAKNLTQEQVADQIGVSRQKYARVESGTNSITLDILSKVAEILDVTVGDIT 64 Query: 72 FFFDVSPTVC 81 D +P V Sbjct: 65 RVLDETPVVA 74 >gi|251789127|ref|YP_003003848.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537748|gb|ACT06369.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 95 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+RL R+ G+ Q +LG G+ +V +YE+ V+ S + + VL+ P Sbjct: 2 IGKRLRLARVNAGLKQVELGCLAGLDEETASSRVSQYEREVSSPDFSLVCRFAAVLDVPE 61 Query: 71 SFFFDV 76 ++F+ V Sbjct: 62 AYFYAV 67 >gi|291286694|ref|YP_003503510.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290883854|gb|ADD67554.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 105 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R SQE L E I+ + + + E+G + V A+ L I+ L PI+ Sbjct: 6 VKLGRRIREVRRSKNFSQETLAEKANISSKYLGEVERGESNVSAALLNDIASALNIPIAE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D D + + ++D+++ + L + ++ I Sbjct: 66 LMDYGHV--DDDRNLKVEIIDYVNRANAECLQKIYVFI 101 >gi|261409127|ref|YP_003245368.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329923481|ref|ZP_08278961.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261285590|gb|ACX67561.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328941241|gb|EGG37537.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 122 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 49/106 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+RI R G +QE+L +GIT + YEK + L ++++ + I + Sbjct: 1 MNYGERIAELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + S + E + +D + D L R+ + +D K+ ++ Sbjct: 61 LIGRTTLEKSVLDPEVRSFVDGLELSDQDLLERFNLTVDGRKLTEE 106 >gi|253572160|ref|ZP_04849564.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838340|gb|EES66427.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 135 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 16/124 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG+ ++ R+ LGM QE L LGI+ Q++ K EK I + L + I+ Sbjct: 13 HVGRNLQRIRVYLGMKQEALAADLGISQQEISKIEKQ---------DEIEDKLLTQIATA 63 Query: 74 FDVSPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 VS V D E N+ D +P + + KI+EL ++ Sbjct: 64 LGVSAEVIRDFDVERAIYNINSYKDATISPGATAT--VYAHTQQINPLDKIVELYERLLQ 121 Query: 129 SEKK 132 SE++ Sbjct: 122 SERE 125 >gi|242309806|ref|ZP_04808961.1| predicted protein [Helicobacter pullorum MIT 98-5489] gi|239523807|gb|EEQ63673.1| predicted protein [Helicobacter pullorum MIT 98-5489] Length = 186 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPIS 71 + +G RIR R LG++QE+ + I + + YE G R+ + + + E L+ +PI Sbjct: 49 LKIGSRIREAREFLGLTQEEFAKNFHIDTRLLSFYETGERRIPVTFIIKMYECLKVNPIF 108 Query: 72 FFFDVSPTVCSDI 84 F V ++ +I Sbjct: 109 VLFGVGSSIIKEI 121 >gi|148266398|ref|YP_001233104.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399898|gb|ABQ28531.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 355 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R + GM QE LGE G+T Q + +E+G + ++ + ++L PI Sbjct: 3 LRELRELAGMKQEALGELAGVTRQTIAAWERGERQPSMQQVVKLCQILHVPIDVML 58 >gi|238796839|ref|ZP_04640344.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] gi|238719327|gb|EEQ11138.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] Length = 95 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR++L R+ ++Q LG+ GI +V +YEK + ++ +EVL+ P Sbjct: 2 IGKRLKLARVNAELTQAGLGQRAGIDEESASSRVSQYEKETHAPDFKLVRKFAEVLDVPE 61 Query: 71 SFFFDVSPTVCS 82 ++F+ V + + Sbjct: 62 AYFYAVDDDLAA 73 >gi|315122908|ref|YP_004063397.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496310|gb|ADR52909.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 210 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K++ NP++I G+RI+ R GM+ ++ GE +G+ V YE+G++ I Sbjct: 88 KRLINPIEI--GERIKKFRKEEGMTLKEFGEWVGLPVSTVSTYERGISAPEIKTALKIKR 145 Query: 65 VLESPISFFF 74 L P+ + + Sbjct: 146 ALGKPLDWIY 155 >gi|264679862|ref|YP_003279771.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210377|gb|ACY34475.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 104 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+R++ R+ G+SQ+ LG G + ++ +YE G+++ ++ ++ VL P++ Sbjct: 9 GERLKQARLAAGLSQKMLGIEAGLDPFVASTRINRYELGIHKPDLLTVRKLATVLRVPVA 68 Query: 72 FFF 74 FF+ Sbjct: 69 FFY 71 >gi|282601274|ref|ZP_05981265.2| putative transcriptional regulator [Subdoligranulum variabile DSM 15176] gi|282569583|gb|EFB75118.1| putative transcriptional regulator [Subdoligranulum variabile DSM 15176] Length = 195 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI---TFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG++IRL R ++Q +LG+ LG+ +V +YE G L+ I++VL+ P Sbjct: 3 MKVGQKIRLVRRHRHLTQRELGDRLGLGEGGANRVAQYEMGYRVPKDELLRKIADVLDVP 62 Query: 70 ISFFF 74 + FF Sbjct: 63 VENFF 67 >gi|195978131|ref|YP_002123375.1| Phage transcriptional repressor [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974836|gb|ACG62362.1| Phage transcriptional repressor [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 232 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++ R+ +SQE+LG+ LG+ + +EK NR + + + + P +F+ Sbjct: 6 GIQLKTARLSRHISQEQLGQLLGVNKMTISNWEKEKNRPNQKHFEELVSIFQLPAEYFY 64 >gi|66395390|ref|YP_239683.1| ORF020 [Staphylococcus phage 53] gi|62635740|gb|AAX90851.1| ORF020 [Staphylococcus phage 53] Length = 239 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L ++Q++LGE L + YE G L I+ +L I F Sbjct: 10 IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDLF 69 Query: 75 DVSPTVCSDISS 86 +DI+S Sbjct: 70 PTRNNKKNDITS 81 >gi|66395312|ref|YP_239602.1| ORF019 [Staphylococcus phage 69] gi|66396425|ref|YP_240780.1| ORF019 [Staphylococcus phage 92] gi|151221206|ref|YP_001332028.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257433183|ref|ZP_05609541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|296277282|ref|ZP_06859789.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus MR1] gi|62635663|gb|AAX90774.1| ORF019 [Staphylococcus phage 69] gi|62636839|gb|AAX91950.1| ORF019 [Staphylococcus phage 92] gi|104641720|gb|ABF73098.1| cI-like repressor [Staphylococcus aureus phage phiNM2] gi|150374006|dbj|BAF67266.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257281276|gb|EEV11413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] Length = 239 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 32/72 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L ++Q++LGE L + YE G L I+ +L I F Sbjct: 10 IGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDLF 69 Query: 75 DVSPTVCSDISS 86 +DI+S Sbjct: 70 PTRNNKKNDITS 81 >gi|326801902|ref|YP_004319721.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326552666|gb|ADZ81051.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 114 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 33/65 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R G+SQ + L I + Q E G+ R+ RL+ I+ +++ +S F+ S Sbjct: 9 QIKSHRKAKGLSQGDMANKLNIVLKTYQNIESGITRLDIERLKQIASLIDLNLSTVFNQS 68 Query: 78 PTVCS 82 P + Sbjct: 69 PETMA 73 >gi|313123989|ref|YP_004034248.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280552|gb|ADQ61271.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 209 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 26/135 (19%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL-------GITFQQVQKYEKGVNRVGASRLQHISEV 65 +++G RIRL R M+ E+L L G T ++ K+E S L ++ Sbjct: 1 MSIGTRIRLLRKSKKMTLEELANQLNSRSSSSGFTKGRLSKWENDREEPKLSSLNQVARF 60 Query: 66 LESPISFFF-DVSPT------------------VCSDISSEENNVMDFISTPDGLQLNRY 106 I +FF D P+ C D + N++D+I+ P+ + N + Sbjct: 61 FNVDIDYFFNDSHPSNTLPLSRNTIRVPVIGTIACGDPIDADENIVDYINVPEPIPANAF 120 Query: 107 FIQIDDVKVRQKIIE 121 + + + II+ Sbjct: 121 ALICEGSSMEPSIID 135 >gi|297204896|ref|ZP_06922293.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197711669|gb|EDY55703.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 135 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 8/76 (10%) Query: 7 IPNPVD--------INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 P+P D +G+R++ R L MSQ+ + + GI + E+G RV + Sbjct: 2 TPSPSDARARDPELTQLGERLKRTRDYLNMSQQFVSDNTGIPRSAISDIERGERRVDSLE 61 Query: 59 LQHISEVLESPISFFF 74 L+ ++ + P+++F Sbjct: 62 LKKLARLYRQPVAYFL 77 >gi|171779398|ref|ZP_02920362.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282015|gb|EDT47446.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 228 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR+ LG+ Q +L + LGI+ Q +EKG + + L + E+L+ +F Sbjct: 5 EKLKNRRLELGLKQTELAKELGISKQSYFAWEKGTAKPTKANLAKLEELLQVSHGYF 61 >gi|329940155|ref|ZP_08289437.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] gi|329300981|gb|EGG44877.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] Length = 509 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|227500718|ref|ZP_03930767.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227217176|gb|EEI82525.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 143 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ ISE L+ IS D Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALID 63 Query: 76 VSPTVCSDI 84 P +I Sbjct: 64 HEPNSIFEI 72 >gi|157158980|ref|YP_001463318.1| transcriptional repressor DicA [Escherichia coli E24377A] gi|157081010|gb|ABV20718.1| putative transcriptional regulator DicA [Escherichia coli E24377A] Length = 131 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 30/134 (22%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+ RR LG++Q++L + +G + V K+E G N L ++ L+ ++ Sbjct: 2 LSDRLSQRRKQLGLTQQQLADMVGRSSVSVFKWESGQNEPKGQNLLALANALKCSATWLL 61 Query: 75 ----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK-IIELVRSIVSS 129 D +PT ++ +E + RQK ++EL S+ S Sbjct: 62 FGDEDQAPTPVDELPTE-------------------------LDSRQKRLLELFDSLPES 96 Query: 130 EKKYRTIEEECMVE 143 EK+ + IE E VE Sbjct: 97 EKEKQLIELEDKVE 110 >gi|167465058|ref|ZP_02330147.1| SOS-response transcriptional repressor [Paenibacillus larvae subsp. larvae BRL-230010] Length = 211 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +KKI N+ KR+R R GM+Q L + LG+ V +EK A ++ +S Sbjct: 3 DKKIKEIFAANI-KRLRKSR---GMTQGDLAKILGVGISTVSDWEKAKKYPRAGVIEKLS 58 Query: 64 EVLESPISFFFDV 76 + + P S FF+V Sbjct: 59 QYFDMPKSSFFEV 71 >gi|237718064|ref|ZP_04548545.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|293370031|ref|ZP_06616598.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|299147755|ref|ZP_07040818.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|229452705|gb|EEO58496.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292634949|gb|EFF53471.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|298513938|gb|EFI37824.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 134 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I++G++I R + GM+Q +LG+ LGIT Q V K E+ + RL I+ L Sbjct: 10 IHLGRKIERVRRLRGMTQAELGDLLGITKQAVSKIEQ-TEKFDDERLGEIASAL 62 >gi|299820781|ref|ZP_07052670.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|299817802|gb|EFI85037.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] Length = 111 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R G SQEKL + L + Q V +YE G + L ++++ + FF Sbjct: 7 IGNKIRFFREENGYSQEKLAQLLRTSRQTVSRYENGDRKASQDVLYELAQLFGKSMDDFF 66 >gi|71734699|ref|YP_276797.1| hypothetical protein PSPPH_4694 [Pseudomonas syringae pv. phaseolicola 1448A] gi|289650666|ref|ZP_06482009.1| hypothetical protein Psyrpa2_23462 [Pseudomonas syringae pv. aesculi str. 2250] gi|71555252|gb|AAZ34463.1| unnamed protein product [Pseudomonas syringae pv. phaseolicola 1448A] gi|320331935|gb|EFW87872.1| hypothetical protein PsgRace4_00783 [Pseudomonas syringae pv. glycinea str. race 4] gi|330881687|gb|EGH15836.1| hypothetical protein Pgy4_22334 [Pseudomonas syringae pv. glycinea str. race 4] Length = 83 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G++IR RR+ G++Q +L +T Q++ EKG VG + + L+ + Sbjct: 6 ITTRLGEQIRQRRLNRGLTQARLAAMAAVTRQKIIAVEKGDLSVGMTAYARVLGALDCEL 65 Query: 71 SFFFDVSPTV 80 S V PT+ Sbjct: 66 SVIPAVMPTL 75 >gi|319648634|ref|ZP_08002846.1| hypothetical protein HMPREF1012_03885 [Bacillus sp. BT1B_CT2] gi|317389282|gb|EFV70097.1| hypothetical protein HMPREF1012_03885 [Bacillus sp. BT1B_CT2] Length = 82 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 R+ G+SQ + + +GIT + ++ YEKG+ + RL+ +EV P Sbjct: 10 RVNAGLSQSQAAKKIGITPKTLRNYEKGITAIPGYRLKKAAEVYNLP 56 >gi|258545393|ref|ZP_05705627.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826] gi|258519362|gb|EEV88221.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826] Length = 284 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%) Query: 13 INVGKRIRLRRMILGMS-QEKLGECLGITFQQVQKYEK 49 +++GKR+ +R + G S QE+LG+ LG++F + ++EK Sbjct: 1 MSIGKRLLEQRKLAGYSSQEQLGDALGVSFTTIARWEK 38 >gi|239625419|ref|ZP_04668450.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239519649|gb|EEQ59515.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 141 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLE-SPI 70 + +G+RIR R G++QE+L LG+ V KYE G V + + L ++E+LE SP Sbjct: 1 MELGERIRSLRKKKGLTQEELASKLGLQKSAVAKYENGRVTNIKRATLFKMAEILEVSPG 60 Query: 71 SFFF 74 + Sbjct: 61 ELMY 64 >gi|237713408|ref|ZP_04543889.1| transcriptional regulator [Bacteroides sp. D1] gi|262406781|ref|ZP_06083330.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|229446647|gb|EEO52438.1| transcriptional regulator [Bacteroides sp. D1] gi|262355484|gb|EEZ04575.1| transcriptional regulator [Bacteroides sp. 2_1_22] Length = 136 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 7 IPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + N ++ N +G++I R + GM+Q LG+ LGIT Q V K E+ ++ R++ ++ Sbjct: 1 MENEINTNATHIGRKIERIRRLRGMTQTDLGDLLGITKQAVSKMEQS-EKIEDERIKRVA 59 Query: 64 EVL 66 + L Sbjct: 60 DAL 62 >gi|32266247|ref|NP_860279.1| hypothetical protein HH0748 [Helicobacter hepaticus ATCC 51449] gi|32262297|gb|AAP77345.1| hypothetical protein HH_0748 [Helicobacter hepaticus ATCC 51449] Length = 228 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/79 (24%), Positives = 37/79 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R M+Q+ E GI++ +Q YE G L +S++ P+ FF Sbjct: 2 IGSKLVALRNEHQMTQKDFAERTGISYGTLQAYEYGTQSPRYDYLTKVSDIFNVPMIFFL 61 Query: 75 DVSPTVCSDISSEENNVMD 93 D ++ + ++ + V D Sbjct: 62 DDDTSLGNSYTNPKGFVSD 80 >gi|330985816|gb|EGH83919.1| hypothetical protein PLA107_12420 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 83 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G++IR RR+ G++Q +L +T Q++ EKG VG + + L+ + Sbjct: 6 ITTRLGEQIRQRRLNRGLTQARLATLAAVTRQKIIAVEKGDLSVGMTAYARVLGALDCEL 65 Query: 71 SFFFDVSPTV 80 S V PT+ Sbjct: 66 SVIPAVMPTL 75 >gi|237746118|ref|ZP_04576598.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229377469|gb|EEO27560.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 130 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 + KRI R L +SQ +L +G+T Q VQK+EK + L+ +++ L SP Sbjct: 4 IAKRIEDCRHGLNISQSELARKIGVTPQAVQKWEKAKTVPRGATLRKLADALGVSPAYIQ 63 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 F +S V D + E ++I Sbjct: 64 FGISDPV-PDYPAVEQEKAEYI 84 >gi|331086747|ref|ZP_08335824.1| hypothetical protein HMPREF0987_02127 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409913|gb|EGG89348.1| hypothetical protein HMPREF0987_02127 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 242 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 36/62 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ RR++L +S++KL E IT Q + YE G++ L + + LE ++ Sbjct: 1 MSLGDRLKERRVMLNLSRKKLSEITYITPQALANYENGISTPKFEILVSLFQSLECDANY 60 Query: 73 FF 74 + Sbjct: 61 LY 62 >gi|239983013|ref|ZP_04705537.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291454845|ref|ZP_06594235.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291357794|gb|EFE84696.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] Length = 509 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|282600090|ref|ZP_05972947.2| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282566637|gb|EFB72172.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 99 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + +VL Sbjct: 8 PVACAVGQKIKSLRKAQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVRVLKVLGVN 67 Query: 70 ISFFF 74 + FF Sbjct: 68 MGEFF 72 >gi|306830136|ref|ZP_07463320.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304427662|gb|EFM30758.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 228 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSQEKVAQLENILKVAKGYF 61 >gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1] Length = 322 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 9/61 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K I LR+ GMSQE+L E LG++ Q V K+E GA ++ +LE IS FDV Sbjct: 6 KLIELRKK-SGMSQEELAEKLGVSRQSVSKWE------GAQSTPDLNRILE--ISKIFDV 56 Query: 77 S 77 S Sbjct: 57 S 57 >gi|225868534|ref|YP_002744482.1| phage repressor-like protein [Streptococcus equi subsp. zooepidemicus] gi|225701810|emb|CAW99238.1| putative phage repressor-like protein [Streptococcus equi subsp. zooepidemicus] Length = 232 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++ R+ +SQE+LGE LG+ + +EK N+ + + ++ + P +F+ Sbjct: 6 GIQLKTARLSRHISQEQLGELLGVNKMTISNWEKEKNKPNQKHFEELIKIFQLPAEYFY 64 >gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica ATCC 39073] Length = 178 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IR R GMS + + E G+T + + E+ + + L+ I+E L+ PI +F Sbjct: 2 LGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYFL 61 Query: 75 ----DVSPTVCSD 83 D SP V D Sbjct: 62 LNPEDHSPVVRKD 74 >gi|323357088|ref|YP_004223484.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273459|dbj|BAJ73604.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 479 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ G++ ++LG +G+ Q+ E G S LQ I+ E+ ++ Sbjct: 10 LGHRIRHHRLARGLTLDELGALVGVAGSQLSLIENGKREPKLSLLQEIARATETEVTELL 69 Query: 75 DVSP 78 P Sbjct: 70 STEP 73 >gi|254390107|ref|ZP_05005328.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326441822|ref|ZP_08216556.1| helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|197703815|gb|EDY49627.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 420 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 30/64 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R G+SQE+L E G++ VQK E+G V L I+ L S F Sbjct: 5 IGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 64 Query: 75 DVSP 78 P Sbjct: 65 VAGP 68 >gi|160885068|ref|ZP_02066071.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483] gi|298483202|ref|ZP_07001382.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] gi|156109418|gb|EDO11163.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483] gi|295084669|emb|CBK66192.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] gi|298270719|gb|EFI12300.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] Length = 134 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I++G++I R + GM+Q +LG+ LGIT Q V K E+ + RL I+ L Sbjct: 10 IHLGRKIERVRRLRGMTQAELGDLLGITKQAVSKIEQ-TEKFDDERLGEIASAL 62 >gi|315611793|ref|ZP_07886715.1| hypothetical transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315316208|gb|EFU64238.1| hypothetical transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 228 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLENILKVARGYF 61 >gi|213019902|ref|ZP_03335694.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994511|gb|EEB55167.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 243 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/79 (24%), Positives = 41/79 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 101 IGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLL 160 Query: 75 DVSPTVCSDISSEENNVMD 93 +++ + +E N+++ Sbjct: 161 ELTEDADDKVENELPNLIE 179 >gi|294509118|ref|YP_003566046.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] gi|294352042|gb|ADE72366.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] Length = 149 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 4/119 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G++I R + ++Q++L E L +T Q + K+E + + +L ++EVL + Sbjct: 1 MNRGEKIAKARREMNLTQDQLAEMLEVTRQTISKWESNLAYPESVKLGKLAEVLNVTCDY 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQKIIELVRSIV 127 + + + + I NN ++ L LN Y ID +KI +V+ I+ Sbjct: 61 LLRENQATSTSTSIEVTMNNSGNYTLDWSKLYPILNEYQNMIDCPHYFEKIYGMVKEIM 119 >gi|269127822|ref|YP_003301192.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312780|gb|ACY99154.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 99 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+ +RLRR LG++Q +L E G+ V ++E G L+ ++E LE + Sbjct: 29 IRFQLGEAVRLRREELGLTQAQLAERAGLKQPAVARFEAGGTMPTIPMLERLAEALEMRL 88 Query: 71 SFFFD 75 S F Sbjct: 89 SIRFQ 93 >gi|331092227|ref|ZP_08341055.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401659|gb|EGG81238.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] Length = 154 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I L+R M+QE+L E LG++ + + K+E G S ++++ + LE ++ F Sbjct: 6 IGKYISLKRKQKNMTQEQLAEKLGVSNKTISKWETGKCMPDYSIIKNLCDELEITVAELF 65 Query: 75 D 75 D Sbjct: 66 D 66 >gi|325663144|ref|ZP_08151594.1| hypothetical protein HMPREF0490_02335 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470598|gb|EGC73828.1| hypothetical protein HMPREF0490_02335 [Lachnospiraceae bacterium 4_1_37FAA] Length = 242 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 36/62 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ RR++L +S++KL E IT Q + YE G++ L + + LE ++ Sbjct: 1 MSLGDRLKERRVMLNLSRKKLSEITYITPQALANYENGISTPKFEILVSLFQSLECDANY 60 Query: 73 FF 74 + Sbjct: 61 LY 62 >gi|160947244|ref|ZP_02094411.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] gi|158446378|gb|EDP23373.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] Length = 180 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++I+ R ILG++QE+L E +T + + E+G+ S L+ + E L + IS Sbjct: 1 MDIGEKIKNLRTILGLTQEELAERAELTKGFISQLERGLTSPSISSLEDVLEALGTNIS 59 >gi|148360856|ref|YP_001252063.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby] gi|296106080|ref|YP_003617780.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99 Alcoy] gi|148282629|gb|ABQ56717.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby] gi|295647981|gb|ADG23828.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99 Alcoy] Length = 224 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ RM+ G+S++ L E GI+ +Q +E G N + ++ + +L + Sbjct: 14 MGQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNKAKAASLVGILNQ-----Y 68 Query: 75 DVSPTV 80 DVS ++ Sbjct: 69 DVSCSI 74 >gi|331082015|ref|ZP_08331143.1| hypothetical protein HMPREF0992_00067 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405610|gb|EGG85140.1| hypothetical protein HMPREF0992_00067 [Lachnospiraceae bacterium 6_1_63FAA] Length = 354 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/105 (20%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR RR+ ++QE++ LG+T V K+EKG + + L ++ +LE+ ++ Sbjct: 1 MKINETIRQRRIERNLTQEQVANYLGVTAPAVNKWEKGTSYPDITTLPALARILETDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + E + F++T L F+++ ++ + + Sbjct: 61 LLSFKEELT------EQEIAIFLNTLSELLEKEGFLKVYEIAMEK 99 >gi|297617997|ref|YP_003703156.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145834|gb|ADI02591.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 216 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG RI+ R G++QE+LG+ L + + KYEKG + L+ +++ + + Sbjct: 3 SVGSRIKQLREERGLTQEQLGKILNVQKAAISKYEKGHTLPDSEALKKLAKFFNVSVDYL 62 Query: 74 FDVSPT 79 ++ T Sbjct: 63 LCLTDT 68 >gi|289627202|ref|ZP_06460156.1| hypothetical protein PsyrpaN_19049 [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 83 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G++IR RR+ G++Q +L +T Q++ EKG VG + + L+ + Sbjct: 6 ITTRLGEQIRQRRLNRGLTQARLATMAAVTRQKIIAIEKGDLSVGMTAYARVLGALDCEL 65 Query: 71 SFFFDVSPTV 80 S V PT+ Sbjct: 66 SVIPAVMPTL 75 >gi|218673688|ref|ZP_03523357.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 99 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 91 Query: 69 PISFFF 74 P++ FF Sbjct: 92 PLTAFF 97 >gi|126732539|ref|ZP_01748337.1| transcriptional regulator, putative [Sagittula stellata E-37] gi|126706985|gb|EBA06053.1| transcriptional regulator, putative [Sagittula stellata E-37] Length = 433 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P D G RIR +R+ GM Q +L + GI+ + E R+G L I++ L Sbjct: 2 PRDTLTGSRIREKRIAQGMRQSELAKIAGISASYLNLIEHNRRRIGGKLLLEIADAL 58 >gi|89074996|ref|ZP_01161441.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|90581632|ref|ZP_01237423.1| transcriptional regulator, putative [Vibrio angustum S14] gi|89049235|gb|EAR54799.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|90437215|gb|EAS62415.1| transcriptional regulator, putative [Vibrio angustum S14] Length = 106 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 14/84 (16%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISE 64 NP+ + + K IR R I SQ++LG +GI ++ +YEKG + S L+ I++ Sbjct: 5 NPIPVRL-KEIRKRAKI---SQKELGVRVGIDESSASARMNQYEKGKHTPDISTLKKIAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEE 88 L P+++FF C D SS E Sbjct: 61 ELGVPLNYFF------CEDESSAE 78 >gi|294631998|ref|ZP_06710558.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] gi|292835331|gb|EFF93680.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] Length = 509 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|160895055|ref|ZP_02075829.1| hypothetical protein CLOL250_02605 [Clostridium sp. L2-50] gi|156863486|gb|EDO56917.1| hypothetical protein CLOL250_02605 [Clostridium sp. L2-50] Length = 209 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|260588634|ref|ZP_05854547.1| DNA-binding protein [Blautia hansenii DSM 20583] gi|260541109|gb|EEX21678.1| DNA-binding protein [Blautia hansenii DSM 20583] Length = 354 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/105 (20%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR RR+ ++QE++ LG+T V K+EKG + + L ++ +LE+ ++ Sbjct: 1 MKINETIRQRRIERNLTQEQVANYLGVTAPAVNKWEKGTSYPDITTLPALARILETDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + E + F++T L F+++ ++ + + Sbjct: 61 LLSFKEELT------EQEIAIFLNTLSELLEKEGFLKVYEIAMEK 99 >gi|254465972|ref|ZP_05079383.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206686880|gb|EDZ47362.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 432 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 28/55 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D G RIR RR+ILG+ Q +L GI+ + E R+G L I+ VL Sbjct: 4 DTLTGSRIRERRLILGLRQAELARKAGISASYLNLIEHNRRRIGGKLLVGIAGVL 58 >gi|242308986|ref|ZP_04808141.1| predicted protein [Helicobacter pullorum MIT 98-5489] gi|239524410|gb|EEQ64276.1| predicted protein [Helicobacter pullorum MIT 98-5489] Length = 90 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFF 73 G+R+++ R LG+ + ++ LG+T + +Q YE G ++G + I +V ++ PI Sbjct: 14 AGERLKIIRESLGLKRNEMAFVLGVTDKLLQNYETGHKKIGIDFAKSIYDVYKANPIFLT 73 Query: 74 FDVSPTVCS 82 F + + + Sbjct: 74 FGIGEPILN 82 >gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] Length = 110 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+SQ LG+ LG+ Q + +E G + + + E L+ P+ +F + Sbjct: 25 GLSQAALGKLLGVQTQTISNWENGKSEPNLKTINKLCEALDVPLRYFIN 73 >gi|332716566|ref|YP_004444032.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063251|gb|ADY66941.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 225 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L G++ + K E G + LQ +S+ L Sbjct: 31 NNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLTTLQTLSKALGV 90 Query: 69 PISFFF 74 PI+ FF Sbjct: 91 PITAFF 96 >gi|298250743|ref|ZP_06974547.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297548747|gb|EFH82614.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 850 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS-RLQ 60 ++ G R+R R+ L +SQE L E L I+ + ++++E+G AS RLQ Sbjct: 1 MHFGNRLRQERLRLHLSQEALAEALAISARSIRRWEQGQALPQASVRLQ 49 >gi|126649830|ref|ZP_01722066.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] gi|126593549|gb|EAZ87494.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] Length = 180 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PIS 71 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L I EVL S P Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 72 FFFDVSP 78 FF D +P Sbjct: 61 FFDDGTP 67 >gi|332652945|ref|ZP_08418690.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518091|gb|EGJ47694.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 169 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 29/45 (64%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQ++L L + Q V K+E+G++ + L +SE LE+P+S Sbjct: 14 GLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVS 58 >gi|292557937|gb|ADE30938.1| Transcriptional regulator, Cro/CI family [Streptococcus suis GZ1] Length = 190 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESP 69 + + G++++ R LGMSQ++L +G+T + + YE +R G R + ++E L Sbjct: 53 ITMTFGEKVKAERTKLGMSQDELAAKIGVTRRIIGSYENDKSRPRGMERYKKLAESLNVN 112 Query: 70 ISFFFDVSPTVCSDI 84 +++ +D+ Sbjct: 113 VNYLLSEDDAFIADV 127 >gi|240147526|ref|ZP_04746127.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200275|gb|EEU98559.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 238 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 39 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 98 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 99 KGETDEYETDIT 110 >gi|226324082|ref|ZP_03799600.1| hypothetical protein COPCOM_01860 [Coprococcus comes ATCC 27758] gi|225207631|gb|EEG89985.1| hypothetical protein COPCOM_01860 [Coprococcus comes ATCC 27758] Length = 209 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|225569728|ref|ZP_03778753.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] gi|225161198|gb|EEG73817.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] Length = 114 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/87 (21%), Positives = 44/87 (50%), Gaps = 7/87 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K ++ R +SQ++L + L T Q + KYE G++ L+++++ ++ I + Sbjct: 1 MNIVKNLKKLRTERNLSQQQLADMLHTTQQNIYKYENGISEPNLETLKNMADHFQTSIDY 60 Query: 73 F-------FDVSPTVCSDISSEENNVM 92 + P D++S+E ++ Sbjct: 61 LVGYTSIRHKIEPVSEYDLNSDEQTLI 87 >gi|302132105|ref|ZP_07258095.1| Helix-turn-helix domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 370 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFFF 74 ++RL R G S ++GE LG+T Q K E VN + + ++L+ + EVL+ SFFF Sbjct: 18 KLRLARCAAGRSLAEIGELLGVTRQYAHKLE--VNAIPSPNQLERLCEVLKVGESFFF 73 >gi|257460926|ref|ZP_05626027.1| putative transcriptional regulator [Campylobacter gracilis RM3268] gi|257442257|gb|EEV17399.1| putative transcriptional regulator [Campylobacter gracilis RM3268] Length = 233 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI+ R G++Q +L GI+ +Q YE + +L IS+VL+ I F Sbjct: 1 MNLGLRIKNLREERGLTQLELANLSGISRASIQLYEADKVEIPVKKLSDISKVLDVDIDF 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|24379268|ref|NP_721223.1| transcription regulator [Streptococcus mutans UA159] gi|24377185|gb|AAN58529.1|AE014922_4 hypothetical protein; putative transcriptional regulator [Streptococcus mutans UA159] Length = 296 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 R+R R LG+SQEKL E L I+ Q + K+E G L +S+ + I Sbjct: 8 RLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSI 60 >gi|95930530|ref|ZP_01313265.1| protein of unknown function DUF955 [Desulfuromonas acetoxidans DSM 684] gi|95133365|gb|EAT15029.1| protein of unknown function DUF955 [Desulfuromonas acetoxidans DSM 684] Length = 367 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK+ NP R++ R G + KL +CL +T + + YE G + I+ Sbjct: 2 NKKVFNPA------RLKFAREKRGFTIRKLCDCLKLTTKSLSDYENGRRDPNDKTISEIA 55 Query: 64 EVLESPISFFF 74 ++L FFF Sbjct: 56 KILNFQTGFFF 66 >gi|304398841|ref|ZP_07380711.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304353545|gb|EFM17922.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 210 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIRLRR L ++Q++L + + ++ + ++EK L ++E L +F Sbjct: 5 TLGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEETLPRGENLLRLAEALGCAPAFL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D V S+ + + + ++ D + R+ DD VR +++ +S + Sbjct: 65 IDGDGPVFSESAYGGLHQIPLLNQRD---VTRWL--TDDSSVRHELLMHNDMALSQQSFA 119 Query: 134 RTIEEECMV 142 +EE+ M+ Sbjct: 120 FRVEEQAMM 128 >gi|309792582|ref|ZP_07687044.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] gi|308225396|gb|EFO79162.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] Length = 206 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 5 KKIPNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + P+P D ++VG R+R R +S L E G+ + E G S LQ + Sbjct: 20 RDCPSPQDGKVDVGARLRFLREGRQLSIRALAEASGLAVNTLSLIENGKTSPSVSTLQQV 79 Query: 63 SEVLESPISFFFD 75 + L PI+ FF+ Sbjct: 80 AVALGVPITSFFE 92 >gi|258517274|ref|YP_003193496.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780979|gb|ACV64873.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 170 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 VG R++ R LG+SQ+ GECLGI+ + + + EK ++H+ Sbjct: 3 VGVRVQKLRKHLGLSQKDFGECLGISQKHISQIEKDTREPSEQLIKHL 50 >gi|297191369|ref|ZP_06908767.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] gi|197720621|gb|EDY64529.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] Length = 509 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|329964525|ref|ZP_08301579.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328524925|gb|EGF51977.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 127 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R++L RM ++QE++GE L ++ K E G + +RL I+ +L + F Sbjct: 9 VGQRLQLLRMEKNLTQEQMGEQLNLSTSAYCKIEYGETDLTLTRLNKIANILNMSAAELF 68 >gi|307828919|gb|ADN95141.1| Str [Staphylococcus aureus] Length = 67 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NV +R R+ GMSQ+K LG+ +Q + +EK + + S++ + ++ P+ + Sbjct: 4 NVKLLLRAARINNGMSQKKAASLLGVHYQTLASWEKDSSDLSRSKMLLMEKIYSIPLEYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|291551015|emb|CBL27277.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 209 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|226944157|ref|YP_002799230.1| DNA binding protein, XRE family [Azotobacter vinelandii DJ] gi|226719084|gb|ACO78255.1| DNA binding protein, XRE family [Azotobacter vinelandii DJ] Length = 76 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 35/68 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R RR+ G++Q KL GIT Q+V E+G VG + + L+ + Sbjct: 1 MRLGEQVRQRRLNRGLTQAKLAALAGITRQKVIAIERGDLSVGMTAYARVLGALDCEFAL 60 Query: 73 FFDVSPTV 80 PT+ Sbjct: 61 VPAAMPTL 68 >gi|207722560|ref|YP_002252996.1| phage regulatory protein [Ralstonia solanacearum MolK2] gi|206587742|emb|CAQ18324.1| putative phage regulatory protein [Ralstonia solanacearum MolK2] Length = 136 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +G+R+ R G++Q++L E LGI Q + YE G R+ AS Sbjct: 29 ELGERVAEARKAHGLTQQQLAEALGIAQQTLAHYEVGRARLPAS 72 >gi|190575699|ref|YP_001973544.1| putative helix-turn-helix DNA binding protein [Stenotrophomonas maltophilia K279a] gi|190013621|emb|CAQ47256.1| putative helix-turn-helix DNA binding protein [Stenotrophomonas maltophilia K279a] Length = 163 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 6/49 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK------GVNRVG 55 I++GK +R RR LG+SQ +L G++ Q V E GVNRVG Sbjct: 4 IDIGKAVRTRREQLGLSQGQLAHLSGLSRQTVVGLEGGTLSDLGVNRVG 52 >gi|26249039|ref|NP_755079.1| putative repressor protein of prophage [Escherichia coli CFT073] gi|331651509|ref|ZP_08352529.1| repressor protein C2 [Escherichia coli M718] gi|26109446|gb|AAN81649.1|AE016765_51 Putative repressor protein of prophage [Escherichia coli CFT073] gi|331050782|gb|EGI22839.1| repressor protein C2 [Escherichia coli M718] Length = 208 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R + SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSIDYIL 63 >gi|121634808|ref|YP_975053.1| putative phage repressor [Neisseria meningitidis FAM18] gi|218768099|ref|YP_002342611.1| putative phage repressor [Neisseria meningitidis Z2491] gi|120866514|emb|CAM10264.1| putative phage repressor [Neisseria meningitidis FAM18] gi|121052107|emb|CAM08421.1| putative phage repressor [Neisseria meningitidis Z2491] gi|254672493|emb|CBA05983.1| transcriptional regulator, Cro/CI family [Neisseria meningitidis alpha275] gi|261392641|emb|CAX50205.1| putative DNA-binding phage protein [Neisseria meningitidis 8013] gi|308389194|gb|ADO31514.1| putative phage repressor [Neisseria meningitidis alpha710] gi|319410341|emb|CBY90689.1| putative DNA-binding phage protein [Neisseria meningitidis WUE 2594] gi|325132108|gb|EGC54804.1| phage repressor [Neisseria meningitidis M6190] gi|325136414|gb|EGC59022.1| phage repressor [Neisseria meningitidis M0579] gi|325138041|gb|EGC60614.1| hypothetical protein NMBES14902_1229 [Neisseria meningitidis ES14902] gi|325142304|gb|EGC64718.1| hypothetical protein NMB9615945_1127 [Neisseria meningitidis 961-5945] gi|325198242|gb|ADY93698.1| hypothetical protein NMBG2136_0985 [Neisseria meningitidis G2136] gi|325204082|gb|ADY99535.1| hypothetical protein NMBM01240355_1010 [Neisseria meningitidis M01-240355] Length = 125 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 17/89 (19%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ +R LG++Q + E GI + KYE+GV +VL S ++ D Sbjct: 8 GNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGV-------FMPSGDVLLSFLNMGID 60 Query: 76 VS----------PTVCSDISSEENNVMDF 94 VS P+ S+IS EE+ ++ + Sbjct: 61 VSSLFAAEQGIRPSENSEISKEESELLGY 89 >gi|332157700|ref|YP_004422979.1| hypothetical protein PNA2_0057 [Pyrococcus sp. NA2] gi|331033163|gb|AEC50975.1| hypothetical protein PNA2_0057 [Pyrococcus sp. NA2] Length = 239 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVL 66 P+P GK +R R I G+SQ +L E LG++ + YE G + GAS ++ E L Sbjct: 21 PDP-----GKTMRKWREIFGISQTELAEYLGVSSSVISDYEGGRRKSPGASTIRKFVEAL 75 >gi|257871225|ref|ZP_05650878.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805389|gb|EEV34211.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 346 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 8/65 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R G++QE+L + LG+T V K+EKG + H +L +PI+ Sbjct: 1 MEMGEVIRQYRKKKGLTQEELAKRLGVTAPAVNKWEKGHS--------HPDILLLAPIAR 52 Query: 73 FFDVS 77 D+S Sbjct: 53 LLDIS 57 >gi|323356598|ref|YP_004222994.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323272969|dbj|BAJ73114.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 197 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/79 (24%), Positives = 38/79 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R LG+S + L E G++F V + E+G+ LQ ++ L P++ Sbjct: 15 TLGAAVRDARKRLGLSVQALSEKAGVSFGLVSQLERGLGNPSLQSLQRLAGALGIPVAQL 74 Query: 74 FDVSPTVCSDISSEENNVM 92 D + ++ + ++M Sbjct: 75 LDEPAVPLAVVTRAKRHIM 93 >gi|149916489|ref|ZP_01905006.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149809591|gb|EDM69447.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 435 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P +G RIR RR++ G+ Q +L + +GI+ + E R+ L ++EVLE Sbjct: 2 PESSMIGTRIRERRVMNGIRQSELAKMVGISPSYLNLIEHNRRRIAGKTLIKLAEVLE 59 >gi|149203629|ref|ZP_01880598.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142746|gb|EDM30788.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 436 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P + +G RIR RR++ GM Q L + GI+ + E R+G L ++E L+ Sbjct: 2 PDRLMIGTRIRERRVLNGMRQSDLAQRAGISPSYLNLIEHNHRRIGGKTLLKLAEALK 59 >gi|304387680|ref|ZP_07369865.1| phage repressor [Neisseria meningitidis ATCC 13091] gi|304338290|gb|EFM04415.1| phage repressor [Neisseria meningitidis ATCC 13091] Length = 125 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 17/89 (19%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ +R LG++Q + E GI + KYE+GV +VL S ++ D Sbjct: 8 GNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGV-------FMPSGDVLLSFLNMGID 60 Query: 76 VS----------PTVCSDISSEENNVMDF 94 VS P+ S+IS EE+ ++ + Sbjct: 61 VSSLFAAEQGIRPSENSEISKEESELLGY 89 >gi|290580727|ref|YP_003485119.1| hypothetical protein SmuNN2025_1201 [Streptococcus mutans NN2025] gi|254997626|dbj|BAH88227.1| hypothetical protein [Streptococcus mutans NN2025] Length = 294 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 R+R R LG+SQEKL E L I+ Q + K+E G L +S+ + I Sbjct: 6 RLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSI 58 >gi|253578635|ref|ZP_04855906.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849578|gb|EES77537.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 220 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 39 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 98 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 99 KGETDEYETDIT 110 >gi|330830628|ref|YP_004393580.1| transcriptional protein [Aeromonas veronii B565] gi|328805764|gb|AEB50963.1| Transcriptional protein [Aeromonas veronii B565] Length = 88 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + VGK+IR R +G+S+ K + LG+ ++ YE G VG + L ++ Sbjct: 6 VTVGKKIRQIREAVGLSRPKFADLLGVPPTTLKNYELGYREVGGAFLVALAH 57 >gi|302879146|ref|YP_003847710.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581935|gb|ADL55946.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 117 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 RR L +Q +L E +G+ + V ++E+G N RL+ ++E L+ P+ Sbjct: 16 RRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPL 64 >gi|325662744|ref|ZP_08151338.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470981|gb|EGC74209.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] Length = 194 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G +Q+ L LG + + +QKYE G V + + +++VL++ ++ Sbjct: 9 IGERIKTLRKKRGYNQKDLATLLGKSLRTIQKYESGEIEVSIAMVNELAKVLDTTSTYLL 68 >gi|253580755|ref|ZP_04858019.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848126|gb|EES76092.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 220 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 39 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 98 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 99 KGETDEYETDIT 110 >gi|261366797|ref|ZP_05979680.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571333|gb|EFB76868.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGKR++ R +G SQ K+ + LG T + +YE G + + ++ + + + Sbjct: 2 IEVGKRLKALRESIGFSQVKMAQALGSTQSSINRYENGQSSPSVELFRRYADYFDVSLDY 61 Query: 73 FF 74 F Sbjct: 62 IF 63 >gi|49474962|ref|YP_033003.1| hypothetical protein BH01480 [Bartonella henselae str. Houston-1] gi|49237767|emb|CAF26960.1| hypothetical protein BH01480 [Bartonella henselae str. Houston-1] Length = 180 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEK-LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KR R R ILG ++ K E LG+T + YE GV+ AS L E+ + + Sbjct: 12 LAKRFREVRRILGFTERKQFAEHLGVTAGSIGTYETGVSEPTASALSKYQEICGVSLDWL 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + + +D++ + + P GL Sbjct: 72 VTGNGEMFTDMAKAKAAGFKPQAIPAGL 99 >gi|308067920|ref|YP_003869525.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857199|gb|ADM68987.1| Transcriptional regulator [Paenibacillus polymyxa E681] Length = 122 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 44/99 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G RI R G+ QE+L + LGIT + YEK + L ++++ I + Sbjct: 1 MNYGSRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFEILTKLADIFGVTIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + + S+ +D + D L R+ + ID Sbjct: 61 LVGRTSHPAAILDSDVREFVDQLELSDEDILRRFNLTID 99 >gi|262197484|ref|YP_003268693.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080831|gb|ACY16800.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 131 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G+ +R R G++QE+ E +G++ + + E+G + QHI+ LE Sbjct: 8 TMGREMRRARTAQGLTQERAAEAIGVSVEFYARVERGKSHPSVETFQHIASTLE 61 >gi|159186071|ref|NP_356428.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141205|gb|AAK89213.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 208 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L G++ + K E G + LQ +S+ L Sbjct: 14 NNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLTTLQTLSKALGV 73 Query: 69 PISFFF 74 PI+ FF Sbjct: 74 PITAFF 79 >gi|145298283|ref|YP_001141124.1| transcriptional protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851055|gb|ABO89376.1| transcriptional protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 88 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + VGK+IR R +G+S+ K + LG+ ++ YE G VG + L ++ Sbjct: 6 VTVGKKIRQIREAVGLSRPKFADLLGVPPTTLKNYELGYREVGGAFLVALAH 57 >gi|332980702|ref|YP_004462143.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698380|gb|AEE95321.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 80 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/67 (23%), Positives = 35/67 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR G++QE+L +G+ + K E G R + + I++ L+ + FF+++ Sbjct: 14 LKERRNAKGLTQEQLAALIGVDRTTITKIENGSARPSVNNAKKIAQALDFDWTIFFNIND 73 Query: 79 TVCSDIS 85 S+ + Sbjct: 74 NQTSETA 80 >gi|289168608|ref|YP_003446877.1| transcriptional regulator [Streptococcus mitis B6] gi|288908175|emb|CBJ23017.1| transcriptional regulator [Streptococcus mitis B6] Length = 228 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 13/57 (22%), Positives = 33/57 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ E LG++FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGVSFQAYSAWERGIKEPSKEKVSQLENILKVAKGYF 61 >gi|260460417|ref|ZP_05808669.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034062|gb|EEW35321.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 238 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R LG++ L I+ + K E G+ + LQ +S L P+ Sbjct: 49 LEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPV 108 Query: 71 SFFF 74 + FF Sbjct: 109 TAFF 112 >gi|239945081|ref|ZP_04697018.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 15998] gi|239991543|ref|ZP_04712207.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 11379] gi|291448543|ref|ZP_06587933.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] gi|291351490|gb|EFE78394.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] Length = 509 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|52079830|ref|YP_078621.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52785200|ref|YP_091029.1| YqaE [Bacillus licheniformis ATCC 14580] gi|52003041|gb|AAU22983.1| probable transcriptional regulator (phage-related) [Bacillus licheniformis ATCC 14580] gi|52347702|gb|AAU40336.1| YqaE [Bacillus licheniformis ATCC 14580] Length = 122 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 7/95 (7%) Query: 13 INVGKRIR-LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G R+R LR+M +SQ+KLGE LG+ + YE+ L I++ + I Sbjct: 1 MKFGDRLRELRKMRPNLSQKKLGEHLGLAESTISMYEQNRREPEYEILIKIADYFDVSID 60 Query: 72 FFF-DVSPTVCSDISSEE-----NNVMDFISTPDG 100 + P V I +E N+ FI+ DG Sbjct: 61 YLLRGTDPKVQDKIFEDEAKRILNDPKTFIAARDG 95 >gi|261820979|ref|YP_003259085.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604992|gb|ACX87478.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 99 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+RL R+ G+ Q +LG G+ +V +YE+ V+ + + VL+ P Sbjct: 6 IGKRLRLARVNKGLKQAELGCLAGLDEETASSRVSQYEREVSAPDFGLVSRFATVLDVPE 65 Query: 71 SFFFDV 76 ++F+ V Sbjct: 66 AYFYAV 71 >gi|117620095|ref|YP_855824.1| transcriptional protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561502|gb|ABK38450.1| transcriptional protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 88 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + VGK+IR R +G+S+ K + LG+ ++ YE G VG + L ++ Sbjct: 6 VTVGKKIRQIREAVGLSRPKFADLLGVPPTTLKNYELGYREVGGAFLVALAH 57 >gi|237732671|ref|ZP_04563152.1| DNA-binding protein [Mollicutes bacterium D7] gi|229384247|gb|EEO34338.1| DNA-binding protein [Coprobacillus sp. D7] Length = 344 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP--- 69 + + + I+ +R+ LG +QE+L + L +T V K+E+G++ + L ++ +L++ Sbjct: 1 MKINEIIKEKRLALGYTQEQLAKFLNLTTPAVNKWERGISYPDITILPALARILKTDLNT 60 Query: 70 -ISFFFDVS 77 +SF D+S Sbjct: 61 LLSFKDDLS 69 >gi|254390574|ref|ZP_05005789.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294815656|ref|ZP_06774299.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|326444005|ref|ZP_08218739.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704276|gb|EDY50088.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294328255|gb|EFG09898.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] Length = 509 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|167756456|ref|ZP_02428583.1| hypothetical protein CLORAM_01989 [Clostridium ramosum DSM 1402] gi|167703864|gb|EDS18443.1| hypothetical protein CLORAM_01989 [Clostridium ramosum DSM 1402] Length = 344 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP--- 69 + + + I+ +R+ LG +QE+L + L +T V K+E+G++ + L ++ +L++ Sbjct: 1 MKINEIIKEKRLALGYTQEQLAKFLNLTTPAVNKWERGISYPDITILPALARILKTDLNT 60 Query: 70 -ISFFFDVS 77 +SF D+S Sbjct: 61 LLSFKDDLS 69 >gi|329920508|ref|ZP_08277240.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] gi|328936184|gb|EGG32637.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] Length = 87 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLL 62 Query: 75 D 75 D Sbjct: 63 D 63 >gi|254519524|ref|ZP_05131580.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226913273|gb|EEH98474.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 349 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV----LESPISFFF 74 I+ RR+ G++QE++ E LG++ V K+EKG++ + L ++ + L + +SF Sbjct: 7 IKERRIDQGLTQEQVAEALGVSTPAVNKWEKGISYPDITILPALARLLRVDLNTLLSFKE 66 Query: 75 DVS 77 DV+ Sbjct: 67 DVT 69 >gi|261404033|ref|YP_003240274.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280496|gb|ACX62467.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 272 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 31/65 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I R ++QE L LG+TFQ V K+E G + L +S +L+ I F Sbjct: 5 LAKNINRYRKERRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKLF 64 Query: 75 DVSPT 79 S T Sbjct: 65 GYSST 69 >gi|311894148|dbj|BAJ26556.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 407 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 9/65 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG---------VNRVGASRLQHISE 64 +GKR++ +R+ LGM Q L +G T V K E G +N++ A+ H ++ Sbjct: 7 TIGKRVKRQRLRLGMPQADLAAAIGRTQGWVSKVENGKVELDRASIINQLAAALHCHPND 66 Query: 65 VLESP 69 ++E P Sbjct: 67 LIERP 71 >gi|225017295|ref|ZP_03706487.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum DSM 5476] gi|224949912|gb|EEG31121.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum DSM 5476] Length = 81 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 15/78 (19%) Query: 12 DINVGKRIRLRRMILGMSQEKLGEC----------LGITFQQVQKYEKGVNRVGASRLQH 61 DI +GK IR R Q+KL + LG T K E G+ + AS L Sbjct: 8 DIPLGKNIRSIR-----KQKKLTQMDVVRELELAGLGTTRSSYAKIEAGIQHIYASELIA 62 Query: 62 ISEVLESPISFFFDVSPT 79 I+E+L+ P++ F +PT Sbjct: 63 IAEILDVPLTELFRSNPT 80 >gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] Length = 122 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +GKRI++ R+ ++QE + + +GIT Q V E G V + L I+ L Sbjct: 8 IGKRIKIARIKKNLTQEAIADKIGITPQHVSNIETGNASVSLTTLVAIANTL 59 >gi|270208615|ref|YP_003329386.1| hypothetical protein pSmeSM11ap088 [Sinorhizobium meliloti] gi|76880889|gb|ABA56059.1| hypothetical protein [Sinorhizobium meliloti] Length = 165 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE-S 68 VD + ++ R G+S+ L LG++ +YE+G R+ RL H+ E++ Sbjct: 40 VDEKISAWLKKTREAKGISRADLAHLLGLSVSVYGRYERGSEARLSIPRLIHLCEIMGFM 99 Query: 69 PISFFFDVSPTVCSDISSEENN 90 P+ FD +P + E + Sbjct: 100 PLDVIFDTAPHLWGKTLEEAED 121 >gi|268592289|ref|ZP_06126510.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312068|gb|EFE52521.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 106 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 VG RIR R MS ++L LGI+ Q ++E G R+ L ISE+L+ I Sbjct: 9 VGARIRTLRKDQNMSIQQLSTLLGISQQHQSRHELGEIRIHVDTLYSISEILDLDIQELI 68 Query: 74 FDVS-PTVCSDISSEEN 89 D + P + +S+++N Sbjct: 69 VDFAIPIPVNTMSNKQN 85 >gi|153955561|ref|YP_001396326.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855954|ref|YP_002473076.1| hypothetical protein CKR_2611 [Clostridium kluyveri NBRC 12016] gi|146348419|gb|EDK34955.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569678|dbj|BAH07662.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFF 74 G +++ R+ G+SQ++L LG+T Q + YE+ S ++ I ++L +P FF Sbjct: 3 GLNLKIERIKKGLSQKQLASMLGVTNQTISDYERCKISPSLSNMEKICKILNINPRKLFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 ++ E + V++ I D +L+R Sbjct: 63 -------NNDEKEGDKVLEIIIPEDNKKLDR 86 >gi|295398102|ref|ZP_06808151.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] gi|294973621|gb|EFG49399.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] Length = 263 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +G+RI+ R LGMSQ + + +G T V +E G N R++ I+ + Sbjct: 7 LGERIKKIRKKLGMSQLEFSKAIGATKSAVSNWENGYNAPNNERIKAIANL 57 >gi|121607191|ref|YP_994998.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121551831|gb|ABM55980.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 229 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 39/68 (57%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++I + +D+ +G+++R RR LG+ +++ GI+ + + E+G+ + L + Sbjct: 34 GVRRIHSIIDLWLGEQLRRRRQALGLPLQQVARACGISVSLLSQLERGLRSISMRTLGAL 93 Query: 63 SEVLESPI 70 ++ L PI Sbjct: 94 AQELRLPI 101 >gi|259047500|ref|ZP_05737901.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035691|gb|EEW36946.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 180 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 38/80 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R+ G++QE+L E ++ + + E ++ I EVL P + Sbjct: 1 MEIGHQLRALRIQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCPAAD 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FFD P I EE+ M Sbjct: 61 FFDEGPEEALTIYREEDMTM 80 >gi|291545509|emb|CBL18617.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 110 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE---SPIS 71 +G RI+ R +QE++ + +G++ Q+ + E GVN V L ++EVL I+ Sbjct: 5 LGSRIKALRSAKNFTQEQVADQIGVSRQKYARIESGVNSVTLDILSKVAEVLGVTVGDIT 64 Query: 72 FFFDVSPTV 80 D SP V Sbjct: 65 RVLDESPVV 73 >gi|268590867|ref|ZP_06125088.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313652|gb|EFE54105.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 103 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R++ R G + +L + G+ + QQ+ +YEKGVNR+G L + VL + I F Sbjct: 11 VGFRLKQLRNESGFTAFQLTKEAGLKSEQQLYRYEKGVNRIGIDELVAVLNVLNARIGDF 70 Query: 74 F 74 F Sbjct: 71 F 71 >gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 DIN+GK+++ R GMS +L + G+T + + E+ + L+ I++ L+ P+ Sbjct: 3 DINLGKKVQDFRNKSGMSLRELAKRSGLTASMLSQIERDLVNPSIGTLKAIAQALDVPMF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDG 100 FF D P V + EN I PD Sbjct: 63 KFFKDDEPQVQMIVRRGENKT---IGHPDA 89 >gi|197284938|ref|YP_002150810.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227355341|ref|ZP_03839742.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194682425|emb|CAR42298.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227164565|gb|EEI49436.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 91 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G I+ +R LG++ + L L ++ QQ+ +YE G + + L I +L+S S F Sbjct: 23 TGLFIKYKRKELGLTGQDLAIILNVSQQQISRYENGTTNITVTLLNKILMILDSSWSEFL 82 >gi|120400369|gb|ABM21424.1| transcriptional regulator [Lactobacillus johnsonii] gi|120400393|gb|ABM21447.1| transcriptional regulator [Lactobacillus johnsonii] Length = 374 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R M+ L E +G+T Q + +YE+ Q I L+ P++FF + Sbjct: 5 GTRLKEARYFRKMTITDLAEKIGVTKQMISRYERETGEPSLETFQKIVSALKFPVNFFTE 64 Query: 76 V-SPTVCS 82 S CS Sbjct: 65 SDSNNFCS 72 >gi|319440538|ref|ZP_07989694.1| putative DNA-binding protein [Corynebacterium variabile DSM 44702] Length = 221 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G R+R R GMS L E G++ + K E + + H++ L+ P+ Sbjct: 24 IEVGLGHRVRALRTSRGMSVAALSERAGLSKAMLSKIENAQTSCSLTSVAHLAAALDVPV 83 Query: 71 SFFF 74 + F Sbjct: 84 ATLF 87 >gi|313610053|gb|EFR85399.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 89 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+SQE++ L + Q + K+E+G++ + L ISEVLE+ +S Sbjct: 14 GLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETSVSTLL 61 >gi|329930359|ref|ZP_08283948.1| methyltransferase domain protein [Paenibacillus sp. HGF5] gi|328935085|gb|EGG31571.1| methyltransferase domain protein [Paenibacillus sp. HGF5] Length = 272 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 31/65 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I R ++QE L LG+TFQ V K+E G + L +S +L+ I F Sbjct: 5 LAKNINRYRKEQRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKLF 64 Query: 75 DVSPT 79 S T Sbjct: 65 GYSST 69 >gi|312831462|emb|CBY17644.1| putative transcription factor [Sinorhizobium meliloti] Length = 198 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE-S 68 +D + ++ R G+S+ L LG++ +YE+G R+ RL H+ E++ Sbjct: 73 MDEKISAWLKQTREAKGISRADLAHLLGLSVSVYGRYERGSEARLSIPRLIHLCEIMGFM 132 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 P+ FD++P + E D L L + Q+ +R +I L+R + Sbjct: 133 PLDVIFDIAPHLWGKTLQEAE---------DRLTLTKLVEQLPQDTMRD-LIRLLRRMTP 182 Query: 129 SEK 131 E+ Sbjct: 183 GEQ 185 >gi|291542133|emb|CBL15243.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 108 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ MSQ +L E L + + KYEKG+ + L++++E+ + + +S Sbjct: 6 RLKELRVDNDMSQTELAEKLNLKASAISKYEKGITQPSIDTLKNLAEIFSVTVDYLIGMS 65 Query: 78 ----PTVCSDISSEENNVMD 93 P S I+ E ++++ Sbjct: 66 DIKNPYSNSQITPNEADLIE 85 >gi|29374945|ref|NP_814098.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|257088816|ref|ZP_05583177.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|281416438|ref|YP_003347358.1| cI repressor protein [Enterococcus phage phiFL4A] gi|29342403|gb|AAO80169.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256997628|gb|EEU84148.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|270209614|gb|ACZ64153.1| cI repressor protein [Enterococcus phage phiFL4A] gi|315160614|gb|EFU04631.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0645] gi|315579460|gb|EFU91651.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] Length = 120 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 28 MSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 MSQ++L LG+ + + YE+GV V + L+ ISE+ + I + S T S Sbjct: 17 MSQQELATFLGMKRENISNYERGVITNVSSDTLEKISELFDVSIDYLLGKSDTSNQKNES 76 Query: 87 EENNVMDFISTPDGL 101 VM + T DGL Sbjct: 77 MAKQVMMRMDT-DGL 90 >gi|288871456|ref|ZP_06117657.2| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288863406|gb|EFC95704.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 222 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+++G+ I+ +R L +SQE + E LG++ Q V K+E ++ A L ++ V Sbjct: 20 AIDMSLGENIKTKRNELKLSQEYVAEQLGVSRQAVSKWETDQSQPKAKNLTELATVFHVG 79 Query: 70 IS 71 +S Sbjct: 80 LS 81 >gi|240145805|ref|ZP_04744406.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257202094|gb|EEV00379.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 87 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|218290717|ref|ZP_03494799.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239255|gb|EED06454.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 77 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R GM+ E L +GI+ + E G V L IS+VL+ + + Sbjct: 7 VKIGSRIRSARQSKGMTVESLANAIGISKGSLSAIETGKRPVSLLNLTRISDVLDISLDY 66 Query: 73 FFDVS 77 +S Sbjct: 67 LVGLS 71 >gi|18977758|ref|NP_579115.1| hypothetical protein PF1386 [Pyrococcus furiosus DSM 3638] gi|18893499|gb|AAL81510.1| hypothetical protein PF1386 [Pyrococcus furiosus DSM 3638] Length = 239 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVL 66 P+P GK +R R I G+SQ +L E LG++ + YE G + GAS ++ E L Sbjct: 21 PDP-----GKTMRKWREIFGISQSELAEYLGVSSSVISDYEGGRRKSPGASTIRKFVEAL 75 >gi|271962441|ref|YP_003336637.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505616|gb|ACZ83894.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 99 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+ +RLRR LG++Q +L E G+ V ++E G L+ ++E LE + Sbjct: 29 IRFELGEAVRLRREQLGLTQSELAERTGLKQPAVARFEAGGTMPTIPMLERLAEALEMRL 88 Query: 71 SFFFD 75 S F Sbjct: 89 SVQFQ 93 >gi|255973355|ref|ZP_05423941.1| predicted protein [Enterococcus faecalis T2] gi|255966227|gb|EET96849.1| predicted protein [Enterococcus faecalis T2] Length = 186 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVSPTVCSDIS 85 G SQE E LGI Y KG + + ++ ++EV +P FF++ P S++ Sbjct: 43 GKSQEAFAESLGIKKAAFNNYIKGRREIPNTLMETLAEVYSINPAVFFYEDVPMYISELK 102 Query: 86 SEENNVMDFISTPDGLQLNR 105 + N +S + L +R Sbjct: 103 TSSNITNKIVSIVEQLNESR 122 >gi|76798009|ref|ZP_00780267.1| phage repressor protein [Streptococcus agalactiae 18RS21] gi|76586632|gb|EAO63132.1| phage repressor protein [Streptococcus agalactiae 18RS21] gi|323127145|gb|ADX24442.1| repressor protein, putative [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 230 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ RR+ LG SQ +L + L I +E + S L+ ++ +L+ P ++F Sbjct: 4 GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKTKPNQSNLKQLAILLDVPETYF 61 >gi|307325149|ref|ZP_07604353.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889295|gb|EFN20277.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 509 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 9 IGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|206972991|ref|ZP_03233913.1| dna-binding protein [Bacillus cereus AH1134] gi|229194134|ref|ZP_04320999.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206731875|gb|EDZ49075.1| dna-binding protein [Bacillus cereus AH1134] gi|228589350|gb|EEK47304.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +IN+G++I + R G++ ++L E IT + + EKG+ L+ IS L + Sbjct: 3 NINIGEKIMIFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISAALNIALF 62 Query: 72 FFF 74 FF Sbjct: 63 NFF 65 >gi|114326843|ref|YP_744000.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315017|gb|ABI61077.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P ++ +G ++R R LG++ L ++ + K E G + LQ +S L Sbjct: 37 PASLEAAIGAKVRRLRQRLGITAADLAVEADLSAGMLSKIENGSTSPSLATLQALSRALN 96 Query: 68 SPISFFF 74 +PIS FF Sbjct: 97 TPISSFF 103 >gi|291543870|emb|CBL16979.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 194 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 I G IR R+ GM+Q L E LG++ + V K+E+G S L +S+ LE Sbjct: 4 IRTGSLIRRLRLEQGMTQLALAERLGVSDKAVSKWERGCGAPDLSILPLLSQALE 58 >gi|255280876|ref|ZP_05345431.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268813|gb|EET62018.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 359 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 23/32 (71%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 IR RR LG++QE++ E LG++ V K+EKG Sbjct: 7 IRERRKALGLTQEQVAERLGVSAPAVNKWEKG 38 >gi|225571479|ref|ZP_03780475.1| hypothetical protein CLOHYLEM_07577 [Clostridium hylemonae DSM 15053] gi|225159955|gb|EEG72574.1| hypothetical protein CLOHYLEM_07577 [Clostridium hylemonae DSM 15053] Length = 361 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 44/94 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R + G +QE++ E LG++ V K+E GV+ + L ++ L++ ++ Sbjct: 5 LGKTIQQMRKVQGCTQEQMAETLGVSVAAVSKWENGVSCPDITLLPALARYLKTDLNALL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + ++ N M I G + FI Sbjct: 65 SFHEKISEQEAAAVVNEMSEIFFRSGFEAAYEFI 98 >gi|220930162|ref|YP_002507071.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000490|gb|ACL77091.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 108 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R G+++E+ E L ++ V + E+G ++ L +IS+ L + + Sbjct: 6 IGKRIRDERESFGLTRERFAEMLELSTNFVGQIERGEKKMSLETLINISDCLHISLDYLI 65 Query: 75 DVSP 78 +P Sbjct: 66 KGTP 69 >gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] Length = 360 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 8/95 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR+ R G++QE+L E +GIT V K+E G S + +S ++E ++ Sbjct: 3 VCLAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETG------SCVPDVSLMME--LAE 54 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 FF+ S V + + D + L++++Y+ Sbjct: 55 FFETSVDVLLGYEQQSMALEDRLERLKNLRMSKYY 89 >gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] gi|260938714|gb|EEX94702.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] Length = 185 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I L R G+SQ +L E GIT + E G S LQ I V +S FF Sbjct: 6 IGKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFF 65 >gi|22537417|ref|NP_688268.1| repressor protein [Streptococcus agalactiae 2603V/R] gi|77406937|ref|ZP_00783958.1| repressor protein, putative [Streptococcus agalactiae H36B] gi|22534293|gb|AAN00141.1|AE014250_4 repressor protein, putative [Streptococcus agalactiae 2603V/R] gi|77174457|gb|EAO77305.1| repressor protein, putative [Streptococcus agalactiae H36B] Length = 230 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ RR+ LG SQ +L + L I +E + S L+ ++ +L+ P ++F Sbjct: 4 GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKTKPNQSNLKQLAILLDVPETYF 61 >gi|325970144|ref|YP_004246335.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025382|gb|ADY12141.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 112 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFF 73 +G+RIR R+ GM+Q L +G++ E G ++ L I++ L++ I S Sbjct: 8 LGQRIREARIKTGMTQATLSGIIGLSPSHYSHIESGKAKINLPTLVAIAQALDTTIDSLL 67 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 +D P + I S + + D + Sbjct: 68 YDSIPVL---IDSYDKDFKDLL 86 >gi|160938164|ref|ZP_02085520.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] gi|158438968|gb|EDP16724.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] Length = 359 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI +G RI R M+QE+L LG++ V K+E G + S L ++ LE+ + Sbjct: 1 MDIKLGPRIASLRRAKSMTQEQLALSLGVSPPAVSKWETGASCPDISLLCPLARALETNV 60 Query: 71 SFFFDVSPTVCSD 83 T+ + Sbjct: 61 DTLLQFEETLTEE 73 >gi|319646361|ref|ZP_08000591.1| YqaE protein [Bacillus sp. BT1B_CT2] gi|317392111|gb|EFV72908.1| YqaE protein [Bacillus sp. BT1B_CT2] Length = 120 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R G+SQ +L + LG + ++ YE+G L I++ E + Sbjct: 2 LGKRIAALRKEKGLSQYELADRLGFSRGKLANYEQGTREPDYETLIKIADFFEVSTDYLL 61 Query: 75 -DVSPTVCSDISSEE-----NNVMDFISTPDG 100 V P V I +E N+ F++ DG Sbjct: 62 RGVDPKVQDKIFEDEAKRILNDPKTFLAARDG 93 >gi|295396255|ref|ZP_06806433.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970909|gb|EFG46806.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] Length = 502 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 36/66 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++IR R G++ E+LGE +G Q+ +E G + L +++ L++ + Sbjct: 34 LSIGRKIRHFRTEQGLTLEQLGERVGRAASQISAFESGNREPSIAVLTALAKALDTSAAE 93 Query: 73 FFDVSP 78 D +P Sbjct: 94 LLDPTP 99 >gi|251789524|ref|YP_003004245.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538145|gb|ACT06766.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P +G RI R L ++Q++L E LGI Q + YE G +V AS L ++ +L Sbjct: 18 PFFKELGARIAQARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQLATIL 74 >gi|222152359|ref|YP_002561534.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113170|emb|CAR40616.1| DNA-binding protein [Streptococcus uberis 0140J] Length = 112 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRIRL R+ G++QE+L E + V K E + + L+ + L+ FF Sbjct: 10 ISKRIRLLRLEKGLTQEQLEEKADLGTNYVYKLENQSTNIKVNTLEKVMTALDVDFEEFF 69 Query: 75 DVS 77 D+S Sbjct: 70 DIS 72 >gi|187477795|ref|YP_785819.1| phage repressor [Bordetella avium 197N] gi|115422381|emb|CAJ48906.1| Putative phage repressor [Bordetella avium 197N] Length = 360 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 35/60 (58%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +RI+ R +S E+L E +G+++Q VQ++E G +RL+ +++ L + + + Sbjct: 29 TIHQRIKQLREQRQLSMEQLAELVGVSWQTVQQWENGKTAPKRARLEAVAKALMTTVEYL 88 >gi|90962809|ref|YP_536724.1| transcriptional regulator [Lactobacillus salivarius UCC118] gi|90822003|gb|ABE00641.1| Transcriptional regulator [Lactobacillus salivarius UCC118] gi|300215422|gb|ADJ79835.1| Transcriptional regulator [Lactobacillus salivarius CECT 5713] Length = 376 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ G++++ L + GI+ Q + YE G G+ L I +VL+ P ++F S Sbjct: 9 KLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFPFTYFTAES 68 Query: 78 PT 79 T Sbjct: 69 KT 70 >gi|327481036|gb|AEA84346.1| XRE family transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 83 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G+++R RR+ G++Q L GIT Q+V E+G VG + L+S + Sbjct: 6 ITLRLGEQLRQRRLNRGLTQAALASLAGITRQKVIAIERGDLSVGMIAYARVLAALDSEL 65 Query: 71 SFFFDVSPTV 80 + PT+ Sbjct: 66 NVVPAAMPTL 75 >gi|319784815|ref|YP_004144291.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170703|gb|ADV14241.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 238 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R LG++ L I+ + K E G+ + LQ +S L P+ Sbjct: 49 LEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPV 108 Query: 71 SFFF 74 + FF Sbjct: 109 TAFF 112 >gi|257455479|ref|ZP_05620712.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257447104|gb|EEV22114.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 115 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG+ + R+ M+Q ++ E LGI+ + + E+G + +L +++ + + Sbjct: 7 IDKVVGQSLARHRLACNMTQAQVAEALGISVDAISRMERGTISLNLPKLMQFAKLFKCKL 66 Query: 71 S-FFFDVSPTV 80 S F + SP + Sbjct: 67 SDFVIESSPLI 77 >gi|237731126|ref|ZP_04561607.1| P22 repressor protein c2 [Citrobacter sp. 30_2] gi|226906665|gb|EEH92583.1| P22 repressor protein c2 [Citrobacter sp. 30_2] Length = 208 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+RI+ R + SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 3 TVGQRIKALRRVTKTSQKELGKFCGVSDVAVGYWEKDINVPGGESLSKLAKYFNTSIDYI 62 Query: 74 F 74 Sbjct: 63 L 63 >gi|302541927|ref|ZP_07294269.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459545|gb|EFL22638.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 509 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 9 IGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|34496668|ref|NP_900883.1| hypothetical protein CV_1213 [Chromobacterium violaceum ATCC 12472] gi|34102523|gb|AAQ58888.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 115 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ + R LGM+QE L E LG+ + + + E+G + RL ++EVL ++ Sbjct: 13 IGQAVARHRKALGMNQEDLAEKLGVGLEAISRLERGRIKPTLVRLLELAEVLGCSVNDLL 72 >gi|290956608|ref|YP_003487790.1| UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] gi|260646134|emb|CBG69227.1| putative UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] Length = 509 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 9 IGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|153811810|ref|ZP_01964478.1| hypothetical protein RUMOBE_02203 [Ruminococcus obeum ATCC 29174] gi|149832213|gb|EDM87298.1| hypothetical protein RUMOBE_02203 [Ruminococcus obeum ATCC 29174] Length = 209 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|16799151|ref|NP_469419.1| hypothetical protein lin0073 [Listeria innocua Clip11262] gi|16412493|emb|CAC95306.1| lin0073 [Listeria innocua Clip11262] Length = 158 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KR+ R G SQ KL + LG + QV YE+G L I+E FF+ Sbjct: 3 SKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAE--------FFN 54 Query: 76 VSPTVCSDISSEENNVMDFIST 97 VS + ++NN+ D I+ Sbjct: 55 VSTDYL--LGRDDNNLADTIAA 74 >gi|256545968|ref|ZP_05473323.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256398390|gb|EEU12012.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 166 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ +R L ++QE L + L I+ Q V K+EK ++ L +SE+ I +F Sbjct: 2 IGQKIKNKRKELNLTQEYLAKELNISRQAVSKWEKEISEPSMDNLIKLSEIFGVDIGYF 60 >gi|255280652|ref|ZP_05345207.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255268589|gb|EET61794.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 47 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 21/26 (80%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNR 53 M+QE+L E LG+TF V K+E+GV++ Sbjct: 18 MTQEQLAEALGVTFASVSKWERGVSQ 43 >gi|170736644|ref|YP_001777904.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818832|gb|ACA93414.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 111 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R R+ G+SQE+LG GI +V +YE G + +++VL P SF Sbjct: 13 KRLREARLRSGLSQEQLGIEAGIDEFSASARVNQYETGKHAPKLQTAHRLAQVLHVPTSF 72 Query: 73 FFD 75 ++ Sbjct: 73 LYE 75 >gi|325918018|ref|ZP_08180182.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] gi|325535782|gb|EGD07614.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] Length = 128 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPIS 71 R+ R + G+SQ LG+ +G+ ++ + +YE V +G L +++VL+ P++ Sbjct: 11 AARLAQARQLRGLSQRALGDRMGLGKEKGSSRINRYEHQVTAIGFDNLNTLAQVLDVPVA 70 Query: 72 FFF 74 + Sbjct: 71 YLL 73 >gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685111|gb|ADK28033.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302205396|gb|ADL09738.1| Putative transcription regulator [Corynebacterium pseudotuberculosis C231] gi|302329950|gb|ADL20144.1| Putative transcription regulator [Corynebacterium pseudotuberculosis 1002] gi|308275634|gb|ADO25533.1| Putative transcription regulator [Corynebacterium pseudotuberculosis I19] Length = 475 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 10/126 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G+SQ L L ++ V + E V + L I+EV +FF Sbjct: 6 VGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDVRPLTLPVLHRITEVFGVDATFF- 64 Query: 75 DVSPTVCSDISSEENNVM-DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 S S + +E ++VM D P+ + L +D ++ R++V ++Y Sbjct: 65 --SKDDASRLLAEVHDVMLDKELCPEDIDLQELSDLVDHHP------DIARAVVEMHRRY 116 Query: 134 RTIEEE 139 R + ++ Sbjct: 117 RNVRDK 122 >gi|291537564|emb|CBL10676.1| Helix-turn-helix [Roseburia intestinalis M50/1] gi|291560441|emb|CBL39241.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] Length = 209 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|282601309|ref|ZP_06257987.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569451|gb|EFB74986.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+R++ R +G SQ K+ + LG T + +YE G + + ++ + + + Sbjct: 2 IEVGRRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLDY 61 Query: 73 FF 74 F Sbjct: 62 IF 63 >gi|241664279|ref|YP_002982639.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240866306|gb|ACS63967.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 117 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I RM ++QE+L E LG+ + + ++E+G RL +++V P+ Sbjct: 14 LGKAIARERMARELTQEQLAELLGVEQETISRFERGSTLPPLPRLIQLADVFNVPLESLL 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 T + E ++ ++ DG Sbjct: 74 R---TTTGRPADEAVDISKMLAKLDG 96 >gi|254496262|ref|ZP_05109155.1| irep [Legionella drancourtii LLAP12] gi|254354519|gb|EET13161.1| irep [Legionella drancourtii LLAP12] Length = 89 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ G+SQ++LG G+ ++ +YE G + S L+ I+ +L P ++ Sbjct: 8 KRLKEARIAAGLSQKQLGISAGVDEFSASPRINQYETGKHAPDFSTLKRIALILAVPTAY 67 Query: 73 FF 74 F+ Sbjct: 68 FY 69 >gi|152967479|ref|YP_001363263.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] gi|151361996|gb|ABS04999.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] Length = 513 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RIR R + G + +LGE +G Q+ + E G S + ++ LE + Sbjct: 31 LTVGRRIRYHRGVRGWTLAQLGEAVGTAQSQLSQVENGKREPRLSLVAAVARALEVTPAD 90 Query: 73 FFDVSP 78 D +P Sbjct: 91 LLDPAP 96 >gi|332992547|gb|AEF02602.1| XRE family transcriptional regulator [Alteromonas sp. SN2] Length = 87 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R G+SQ++LG G+ ++ +YEKGV+ ++ ++EVL+ P +F Sbjct: 10 KRLKQARKDRGLSQKQLGILSGMDEFSASARMNQYEKGVHSPDFKTVKALAEVLKVPTAF 69 Query: 73 FFDVSPTVCSDISSEEN 89 + + I+S +N Sbjct: 70 LYCEEDDLAEQIASFKN 86 >gi|282600408|ref|ZP_05974197.2| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] gi|282565257|gb|EFB70792.1| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] Length = 185 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 35/68 (51%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N ++I +G++IRL R +S +L + GI+ + K E G + L+ I+ L Sbjct: 1 MSNKINIKIGQKIRLLRQARNLSLNELSQLSGISKAALSKLESGDSNPRIDTLESIAAAL 60 Query: 67 ESPISFFF 74 P+S F Sbjct: 61 RFPLSDLF 68 >gi|160894257|ref|ZP_02075034.1| hypothetical protein CLOL250_01810 [Clostridium sp. L2-50] gi|156863958|gb|EDO57389.1| hypothetical protein CLOL250_01810 [Clostridium sp. L2-50] gi|295099077|emb|CBK88166.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 209 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|154500312|ref|ZP_02038350.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] gi|150271044|gb|EDM98318.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] Length = 111 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 6/93 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+R+R RR LG+++EK+ E I + E G +++ L +S + P+ + Sbjct: 7 IDIGQRLRQRRQDLGLTREKMAELADIGTGYYGQLEVGTSQMSIDTLIKLSHSMHLPMEY 66 Query: 73 FFDVSPTVCSDISSEENNVMDFIS--TPDGLQL 103 + D S+ V+D + TP L+L Sbjct: 67 ILFGDGYIPGDPSA----VIDLLHRCTPRELKL 95 >gi|292557941|gb|ADE30942.1| Helix-turn-helix type 3 [Streptococcus suis GZ1] Length = 149 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 11/96 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +I GK+IR R LGM+QE+L L +T Q + +E+ VN + L+ I Sbjct: 6 TNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLK--------KI 57 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F F V+ D + E M+ + Q N+Y Sbjct: 58 CFLFGVNM---DDFAKEVITKMETYEKKEKRQFNKY 90 >gi|283768120|ref|ZP_06341035.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283461999|gb|EFC09083.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] Length = 79 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NV +R R+ GMSQ+K LG+ +Q + +EK + + S++ + ++ P+ + Sbjct: 4 NVKLLLRAARINNGMSQKKAASLLGVHYQTLASWEKDSSDLSRSKMLLMEKIYSIPLEYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|237668382|ref|ZP_04528366.1| transcriptional regulator, Cro/CI family [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656730|gb|EEP54286.1| transcriptional regulator, Cro/CI family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 149 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 10/79 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ I+ RR+ LG++ E+LG+ +G+ V+K+E G+ +++I +S Sbjct: 1 MNINNIIKSRRLELGLTYEELGKKIGVGKSTVRKWETGL-------IENIKRDNIIALSK 53 Query: 73 FFDVSPTV---CSDISSEE 88 D+SP++ D +S E Sbjct: 54 ALDISPSIIMGWDDTNSNE 72 >gi|317499111|ref|ZP_07957390.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|291524086|emb|CBK89673.1| Helix-turn-helix [Eubacterium rectale DSM 17629] gi|316893631|gb|EFV15834.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 209 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|219667464|ref|YP_002457899.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537724|gb|ACL19463.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 113 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 39/80 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + V + +R R G++Q++L + LG+ + +EKG N + S L +I LE Sbjct: 3 AIKLRVAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEIN 62 Query: 70 ISFFFDVSPTVCSDISSEEN 89 + + +S S + E+ Sbjct: 63 LDDIYGISDKKISPVELTED 82 >gi|218508625|ref|ZP_03506503.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 225 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 91 Query: 69 PISFFF 74 P++ FF Sbjct: 92 PLTAFF 97 >gi|207725290|ref|YP_002255686.1| transcription regulator protein [Ralstonia solanacearum MolK2] gi|206590524|emb|CAQ37486.1| putative transcription regulator protein [Ralstonia solanacearum MolK2] Length = 96 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +RR G+SQE++ E LGI+ + V + E GV RL +SE+ Sbjct: 1 MRRAGAGLSQERVAEALGISREAVSRMETGVAVPSIVRLAELSEI 45 >gi|190895653|ref|YP_001985945.1| transcriptional regulator [Rhizobium etli CIAT 652] gi|190699598|gb|ACE93682.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 231 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFF 74 P++ FF Sbjct: 94 PLTAFF 99 >gi|295110993|emb|CBL27743.1| Predicted transcriptional regulator with C-terminal CBS domains [Synergistetes bacterium SGP1] Length = 140 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G I+ RR LGM+QE+L LG+T + + E V + + L I+ L + Sbjct: 3 SIGANIKARRRALGMNQEELARKLGVTQANISRIESSVKGLSSDMLLPIASALSCDV 59 >gi|297203046|ref|ZP_06920443.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] gi|197712042|gb|EDY56076.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] Length = 509 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+ IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 7 VRIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|254975392|ref|ZP_05271864.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092781|ref|ZP_05322259.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100891|ref|ZP_05329868.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306781|ref|ZP_05350952.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314521|ref|ZP_05356104.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517196|ref|ZP_05384872.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650302|ref|ZP_05397204.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655775|ref|ZP_05401184.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|306520271|ref|ZP_07406618.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 92 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-- 71 N+ +I++ R LG++QE+LG +G + Q + E G N IS + PI Sbjct: 5 NMKNKIKILREKLGLTQEQLGRLVGTSRQAINAIETGKNEPSIWLAYDISRIFNEPIESV 64 Query: 72 FFFDVS 77 F F+ S Sbjct: 65 FLFEES 70 >gi|317120863|ref|YP_004100866.1| hypothetical protein Tmar_0014 [Thermaerobacter marianensis DSM 12885] gi|315590843|gb|ADU50139.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 131 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--- 74 R+R R G++Q +L +G++ Q + YE G + +Q ++ VL + IS+ Sbjct: 6 RLRKMREARGLTQRELATAIGVSRQAIGLYEAGEREPDLTTIQKLAHVLRTSISYLVGET 65 Query: 75 -DVSPTVCSDISSEENNV 91 D SP S +++ Sbjct: 66 DDPSPLPRSGVAAHREGT 83 >gi|150378302|ref|YP_001314896.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032849|gb|ABR64963.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 165 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE-S 68 +D + ++ R G+S+ L LG++ +YE+G R+ RL H+ E++ Sbjct: 40 MDEKISAWLKKTREAKGISRADLAHLLGLSVSVYGRYERGSEARLSIPRLIHLCEIIGFM 99 Query: 69 PISFFFDVSPTVCSDISSEENN 90 P+ FD +P + E + Sbjct: 100 PLDIIFDTAPHLWGKTPEEAED 121 >gi|257419815|ref|ZP_05596809.1| predicted protein [Enterococcus faecalis T11] gi|257161643|gb|EEU91603.1| predicted protein [Enterococcus faecalis T11] Length = 141 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 11/68 (16%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D + K +RL R MSQ+KL E GI+ + KYEKG ++IS L+S Sbjct: 4 NFSDSTLLKSLRLER---KMSQKKLAELAGISQSALAKYEKGT--------RNISNELDS 52 Query: 69 PISFFFDV 76 +S +V Sbjct: 53 ALSKVLNV 60 >gi|302554854|ref|ZP_07307196.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302472472|gb|EFL35565.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 509 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+ IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 7 VRIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|225017175|ref|ZP_03706367.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum DSM 5476] gi|224950094|gb|EEG31303.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum DSM 5476] Length = 131 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 7/116 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF 73 +GKR++L R G++ + + + +G+ VQ+YE G+ ++ L I++VL + Sbjct: 6 IGKRMKLAREQSGLTLQAVADRVGVAASTVQRYEAGGIEKLKLPVLNAIADVLGVDPGWL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S T C + +NV L L R Q+ K RQKII++ S + + Sbjct: 66 TG-SETAC----APADNVAQTGEERKLLMLCRRAEQLPPEK-RQKIIDIFESTIDT 115 >gi|213967707|ref|ZP_03395854.1| hypothetical protein PSPTOT1_1624 [Pseudomonas syringae pv. tomato T1] gi|301382344|ref|ZP_07230762.1| hypothetical protein PsyrptM_06912 [Pseudomonas syringae pv. tomato Max13] gi|302062947|ref|ZP_07254488.1| hypothetical protein PsyrptK_23414 [Pseudomonas syringae pv. tomato K40] gi|302130703|ref|ZP_07256693.1| hypothetical protein PsyrptN_04867 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927483|gb|EEB61031.1| hypothetical protein PSPTOT1_1624 [Pseudomonas syringae pv. tomato T1] Length = 83 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G++IR RR+ G++Q +L +T Q+V EKG VG + + L+ + Sbjct: 6 ITTRLGEQIRQRRLNRGLTQARLAALAAVTRQKVIAIEKGDLSVGMTAYARVLGALDCEL 65 Query: 71 SFFFDVSPTV 80 S PT+ Sbjct: 66 SVIPAAMPTL 75 >gi|167768466|ref|ZP_02440519.1| hypothetical protein CLOSS21_03025 [Clostridium sp. SS2/1] gi|291086900|ref|ZP_06344824.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|167709990|gb|EDS20569.1| hypothetical protein CLOSS21_03025 [Clostridium sp. SS2/1] gi|291077343|gb|EFE14707.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 232 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 33 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 92 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 93 KGETDEYETDIT 104 >gi|17229533|ref|NP_486081.1| hypothetical protein asr2041 [Nostoc sp. PCC 7120] gi|17131132|dbj|BAB73740.1| asr2041 [Nostoc sp. PCC 7120] Length = 80 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 32/53 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G+ I+ R+++G++QE+ LG+TF V ++E G + +Q I +++ Sbjct: 14 IGQFIQEIRLVMGLTQEEFAVILGVTFPTVNRWENGHTKPSKLAIQQIEALVD 66 >gi|328948780|ref|YP_004366117.1| hypothetical protein Tresu_1938 [Treponema succinifaciens DSM 2489] gi|328449104|gb|AEB14820.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 151 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 11/96 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +I GK+IR R LGM+QE+L L +T Q + +E+ VN + L+ I Sbjct: 6 TNITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLK--------KI 57 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F F V+ D + E M+ + Q N+Y Sbjct: 58 CFLFGVNM---DDFAKEVITKMETYEKKEKRQFNKY 90 >gi|327191632|gb|EGE58643.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 225 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 91 Query: 69 PISFFF 74 P++ FF Sbjct: 92 PLTAFF 97 >gi|206975640|ref|ZP_03236552.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] gi|206746102|gb|EDZ57497.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] Length = 110 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ L ++QE L E + I+ + + E+G + L ++ L + + Sbjct: 6 LGNRIREERLKLNLTQEILAEDINISVSYMGQIERGERNLSLDTLVKLAYRLSVTVDYLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + S ++ EN++ F S DG ++ +D +KV Sbjct: 66 -----LDSVQANNENSIKQFASLIDGRSQKETYMALDMIKV 101 >gi|262368258|ref|ZP_06061587.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262315936|gb|EEY96974.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 106 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 10/100 (10%) Query: 12 DINV-GKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 ++NV R+R+ R +SQE+LG GI ++ +YE+G + I+E+L Sbjct: 5 NLNVFALRLRIARKAKKLSQERLGILAGIDESSASARMNQYERGKHVPDFLMASKIAEIL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + P ++F+ V +D+S+E V +S L++ R+ Sbjct: 65 DLPTAYFY-----VENDLSAEIIQVSHALSNEQKLEVLRF 99 >gi|260174286|ref|ZP_05760698.1| transcriptional regulator [Bacteroides sp. D2] gi|315922556|ref|ZP_07918796.1| transcriptional regulator [Bacteroides sp. D2] gi|313696431|gb|EFS33266.1| transcriptional regulator [Bacteroides sp. D2] Length = 135 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 ++G++I R + GM+Q LGE LG+T Q + K E+ ++ +L+ +++ L Sbjct: 11 HLGRKIERIRRLRGMTQTDLGELLGVTKQAISKMEQS-EKIDDDKLKQVADAL 62 >gi|197302202|ref|ZP_03167261.1| hypothetical protein RUMLAC_00929 [Ruminococcus lactaris ATCC 29176] gi|197298633|gb|EDY33174.1| hypothetical protein RUMLAC_00929 [Ruminococcus lactaris ATCC 29176] gi|291526721|emb|CBK92307.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 209 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B] gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B] Length = 244 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 10/84 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G RIR R G++ ++L + GI+ V ++E G ++ A++L +++ L + + + Sbjct: 6 HIGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVEYL 65 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 ++ + N+ M F + Sbjct: 66 ----------LNGDTNDAMSFADS 79 >gi|220931033|ref|YP_002507941.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] gi|219992343|gb|ACL68946.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] Length = 182 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ N+GK++R R+ G S L E G++ + + E+G L ++ L Sbjct: 2 NEINANIGKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLNV 61 Query: 69 PISFFFD 75 P SFF + Sbjct: 62 PFSFFIE 68 >gi|297157056|gb|ADI06768.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 276 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 28/57 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 GK +R+ RM GMSQ +LGE Q V K E G S + EV +P +F Sbjct: 20 GKEVRIWRMRAGMSQRELGERANYGQQYVAKVEAGERLASRSFAKVCDEVFGTPGTF 76 >gi|255038048|ref|YP_003088669.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254950804|gb|ACT95504.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 79 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + VD+ +G+ IR R ++QE+LGE +G+ Q+ K E G N + + L Sbjct: 3 IGSKVDL-LGRAIRTVRKERNLTQEQLGELVGVQKAQISKLENGNNSATIDTILKVFSAL 61 Query: 67 ESPISFFFDV 76 ++ I F V Sbjct: 62 KAEIQFNITV 71 >gi|254503889|ref|ZP_05116040.1| hypothetical protein SADFL11_3928 [Labrenzia alexandrii DFL-11] gi|222439960|gb|EEE46639.1| hypothetical protein SADFL11_3928 [Labrenzia alexandrii DFL-11] Length = 93 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 NP I ++ R R LG+ Q+ E LG+ + +Q YEKG NR G Sbjct: 8 NPPPIMTPEQFRSWRRTLGLKQKDAAELLGLKKRMIQYYEKG-NRDG 53 >gi|241666493|ref|YP_002984577.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861950|gb|ACS59615.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFF 74 P++ FF Sbjct: 94 PLTAFF 99 >gi|325262228|ref|ZP_08128966.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033682|gb|EGB94959.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 643 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 L R + G +Q ++ E L I+ YE G L+ ISEVLE + F +P Sbjct: 11 LFRKLKGYTQAQMAEKLEISRSTYTNYEIGNRSPDLETLERISEVLECSLDELFGKTPVR 70 Query: 81 CSDISSE 87 +D+ SE Sbjct: 71 TADMVSE 77 >gi|269928987|ref|YP_003321308.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788344|gb|ACZ40486.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 378 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF---D 75 +R RR+ G+SQ+ L E G+T Q V E G + ++ L P+ F D Sbjct: 14 VRERRIAAGLSQQALAERAGLTRQAVSAIEAGRYLPNTAVALRLARALGCPVEELFRLPD 73 Query: 76 VSPTVCSDI 84 V P V +D+ Sbjct: 74 VPPRVRADL 82 >gi|307708163|ref|ZP_07644630.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615609|gb|EFN94815.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 225 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 34/56 (60%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R LG+ Q++L E +G++ Q K+EKG+++ + + +VL+ P + Sbjct: 6 KLKQKREELGLEQQELAELIGVSKQAYFKWEKGLSKPTKVNIAKLEKVLKIPEGYL 61 >gi|266619362|ref|ZP_06112297.1| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288869117|gb|EFD01416.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 355 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR +R LG++QEK+ LG++ V K+EKG+ S L ++ +L++ ++ Sbjct: 7 IREKRKELGLTQEKVAVYLGVSAPAVNKWEKGITCPDVSVLPALARLLKTDLNTLL 62 >gi|163754238|ref|ZP_02161361.1| transcriptional regulator [Kordia algicida OT-1] gi|161326452|gb|EDP97778.1| transcriptional regulator [Kordia algicida OT-1] Length = 255 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 32/72 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+ K I+ R + SQE+ E LG + V YE+G + RL +S+ + PI Sbjct: 3 NIQKNIKHLRSLKSFSQERFAETLGWSRSMVGSYEEGRSEPPIDRLIDLSDHFKLPIDIL 62 Query: 74 FDVSPTVCSDIS 85 T D S Sbjct: 63 VKNDLTQAKDTS 74 >gi|154505077|ref|ZP_02041815.1| hypothetical protein RUMGNA_02587 [Ruminococcus gnavus ATCC 29149] gi|153794556|gb|EDN76976.1| hypothetical protein RUMGNA_02587 [Ruminococcus gnavus ATCC 29149] Length = 209 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|332288631|ref|YP_004419483.1| hypothetical protein UMN179_00550 [Gallibacterium anatis UMN179] gi|330431527|gb|AEC16586.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 129 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IRL R + SQE++ E + ++ K E+G R+ +L+ I+++ + IS Sbjct: 3 IHEKIRLIREMNHWSQEEMAEKMNLSPSGYAKIERGETRLHLDKLEKIAQIFDVDISELL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +C I+ ++ +G+ +++ +K + +IIE Sbjct: 63 SNDKKICFLINENSQLSSNYYGANEGMAFENEKLKL-SLKYKDQIIE 108 >gi|291282703|ref|YP_003499521.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Escherichia coli O55:H7 str. CB9615] gi|290762576|gb|ADD56537.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Escherichia coli O55:H7 str. CB9615] Length = 238 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 27/39 (69%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 + +RIR RR +G++QE++ + +GIT V K+E G ++ Sbjct: 19 ISERIRNRRKDVGLTQEQVAKAIGITRVSVTKWENGSSK 57 >gi|168487423|ref|ZP_02711931.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] gi|183569749|gb|EDT90277.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] Length = 287 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ RL+R L +SQ+ L + GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LAEKFRLKRKELRLSQQTLAK--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISS 86 F+ + S++S+ Sbjct: 62 FNEQIEIKSNLSN 74 >gi|312109734|ref|YP_003988050.1| hypothetical protein GY4MC1_0611 [Geobacillus sp. Y4.1MC1] gi|311214835|gb|ADP73439.1| protein of unknown function DUF955 [Geobacillus sp. Y4.1MC1] Length = 388 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 33/58 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R++ R+ GM+ +L + +G+T Q V ++E+G + ++ VL+ P FF+ Sbjct: 13 RRLKAARVFRGMTITELADKIGVTRQAVSQFEQGKTPPSLESIFKLTNVLQFPRDFFY 70 >gi|253755127|ref|YP_003028267.1| DNA-binding protein [Streptococcus suis BM407] gi|251817591|emb|CAZ55338.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 230 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ RR+ LG SQ +L + L I +E + S L+ ++ +L+ P ++F Sbjct: 4 GKRLKERRITLGYSQSELADKLHINRSSYFNWENEKTKPNQSNLKQLAILLDVPETYF 61 >gi|222033322|emb|CAP76062.1| hypothetical protein LF82_280 [Escherichia coli LF82] Length = 381 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 +R+ R G++ +L L I+ Q + +EKG+ A L I++VL P FF Sbjct: 18 RRLEEAREAKGLTMAELARVLNISRQAISSFEKGLKSPSADTLSAIAKVLGFPERFFLAS 77 Query: 75 DVSPTV 80 SP++ Sbjct: 78 SASPSL 83 >gi|222081886|ref|YP_002541251.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726565|gb|ACM29654.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAASTGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFF 74 P++ FF Sbjct: 94 PLTAFF 99 >gi|13476100|ref|NP_107670.1| hypothetical protein mll7326 [Mesorhizobium loti MAFF303099] gi|14026860|dbj|BAB53456.1| mll7326 [Mesorhizobium loti MAFF303099] Length = 192 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R LG++ L I+ + K E G+ + LQ +S L P+ Sbjct: 2 LEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPV 61 Query: 71 SFFF 74 + FF Sbjct: 62 TAFF 65 >gi|255025294|ref|ZP_05297280.1| hypothetical protein LmonocytFSL_01392 [Listeria monocytogenes FSL J2-003] Length = 158 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KR+ R G SQ KL + LG + QV YE+G L I+E FF+ Sbjct: 3 SKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAE--------FFN 54 Query: 76 VSPTVCSDISSEENNVMDFIST 97 VS + ++NN+ D I+ Sbjct: 55 VSTDYL--LGRDDNNLADTIAA 74 >gi|322420390|ref|YP_004199613.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320126777|gb|ADW14337.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +SQEKL E +G+ +Q+ + E G + L+ I++ L+ I F Sbjct: 8 LGLRIREVRKARQLSQEKLAEKVGVDPKQISRIEGGKSAPSLDTLEAIAKHLQVEIKDLF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 D V D E+ V+ + D Sbjct: 68 DFQHLVPED--KIEDQVLRLLGMMD 90 >gi|332970254|gb|EGK09246.1| LexA family repressor/S24 family protease [Kingella kingae ATCC 23330] Length = 206 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ +R++ RR+ LG+SQ LG+ G+ + + E G N+ ++++ ++ L++ + + Sbjct: 1 MSFNERVKNRRLELGLSQAALGKLAGVPQSTIGQIENGRNK-SSTKILELAHALQTTVEY 59 Query: 73 FFD 75 D Sbjct: 60 LVD 62 >gi|226323100|ref|ZP_03798618.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] gi|225208290|gb|EEG90644.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] Length = 316 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 27/39 (69%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 I +GK I +R LG++Q++L E L ++ + V K+E+G+ Sbjct: 4 IKIGKYIAEKRKALGLTQKQLAEKLNMSDKSVSKWERGI 42 >gi|197284836|ref|YP_002150708.1| phage repressor [Proteus mirabilis HI4320] gi|194682323|emb|CAR42114.1| putative phage repressor [Proteus mirabilis HI4320] Length = 215 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFF 74 RI+ RR+ L ++QE L + L ++ + K+E V LQ +++VLE SP + Sbjct: 4 RIKERRLQLSLTQEALAKMLSVSRVSITKWETRVTEPDGENLQALAKVLEVSPEWLLY 61 >gi|116255759|ref|YP_771592.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260407|emb|CAK03511.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 243 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 50 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 109 Query: 69 PISFFF 74 P++ FF Sbjct: 110 PLTAFF 115 >gi|326775562|ref|ZP_08234827.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326655895|gb|EGE40741.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 75 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 23/36 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 +G R+R+RRM L M+QE+L E I +Q+ E G Sbjct: 16 IGDRVRVRRMHLDMTQERLAETAEIDRSTLQRIEYG 51 >gi|218551631|ref|YP_002385423.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] gi|218359173|emb|CAQ91836.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] Length = 208 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R + SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINVPGGEALSKLAKFFNTSIDYIL 63 >gi|167463515|ref|ZP_02328604.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 151 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 20/135 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR RR +L ++Q ++ E L + E G +S LQ I+++L++ + Sbjct: 1 MSIGERIRQRRKLLQITQLEIAEQLKMGRSNFGHIENGRVTPSSSDLQKIADILQTNADY 60 Query: 73 FF----DVSPTVCS---------DISSEENNVMDFISTPDGLQLNRYF--IQIDDVKVRQ 117 D SP + S ++ ++ + +PD L YF I+ D + R Sbjct: 61 LLGRTDDPSPQGAAAGLKTYPEWATSKDKRDLKKMLQSPDVL----YFDGIEFSD-EDRA 115 Query: 118 KIIELVRSIVSSEKK 132 KI+ ++ +I KK Sbjct: 116 KILGVMETIFWEAKK 130 >gi|148266050|ref|YP_001232756.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399550|gb|ABQ28183.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 356 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +I G+R+ R + GMS + E +G +++ + +YE G L +++VL Sbjct: 5 DPKEI-FGRRLSQARRMRGMSLRAVAEAIGGKVSYNALHRYECGEMMPSDDVLIPVADVL 63 Query: 67 ESPISFFF 74 + P+ FFF Sbjct: 64 DKPLDFFF 71 >gi|325104601|ref|YP_004274255.1| protein of unknown function DUF955 [Pedobacter saltans DSM 12145] gi|324973449|gb|ADY52433.1| protein of unknown function DUF955 [Pedobacter saltans DSM 12145] Length = 354 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITF--QQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R + R++ G S + L + LG T Q + +YEKG A ++ +S+ L +F Sbjct: 8 AERFKSARLMNGFSLQDLADALGGTLSRQALHRYEKGEVIPDAEKINMLSKALNISPDYF 67 Query: 74 FDVSPTVCSDI 84 F + SDI Sbjct: 68 FRTTKVEFSDI 78 >gi|311900356|dbj|BAJ32764.1| putative UDP-N-acetylglucosamine transferase [Kitasatospora setae KM-6054] Length = 509 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK +R R G +Q +L LG T V + E G +G + I E L+S I Sbjct: 9 IGKLVRAARTHKGWTQSQLAAALGTTQSAVARIESGGQNIGLDLVARIGEALDSEI 64 >gi|227113780|ref|ZP_03827436.1| hypothetical protein PcarbP_12483 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 100 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+++ R+ M+QEKLG GI +V +YE G +R + + VL P S+F Sbjct: 16 RLKVARLRAKMTQEKLGVLAGIEEATARSRVSQYESGTHRPTFEMMCAFARVLNVPESYF 75 Query: 74 FDV 76 + V Sbjct: 76 YTV 78 >gi|209918882|ref|YP_002292966.1| putative phage repressor [Escherichia coli SE11] gi|209912141|dbj|BAG77215.1| putative phage repressor [Escherichia coli SE11] Length = 215 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 ++G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 4 SLGIRLKKLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYL 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + VS S + S + + S D + Sbjct: 64 LYGVSSPELSFVQSNPGTKIPYFSWGDAISF 94 >gi|166032930|ref|ZP_02235759.1| hypothetical protein DORFOR_02651 [Dorea formicigenerans ATCC 27755] gi|167766611|ref|ZP_02438664.1| hypothetical protein CLOSS21_01117 [Clostridium sp. SS2/1] gi|218132240|ref|ZP_03461044.1| hypothetical protein BACPEC_00097 [Bacteroides pectinophilus ATCC 43243] gi|225026928|ref|ZP_03716120.1| hypothetical protein EUBHAL_01184 [Eubacterium hallii DSM 3353] gi|323487598|ref|ZP_08092888.1| hypothetical protein HMPREF9474_04639 [Clostridium symbiosum WAL-14163] gi|166027287|gb|EDR46044.1| hypothetical protein DORFOR_02651 [Dorea formicigenerans ATCC 27755] gi|167711734|gb|EDS22313.1| hypothetical protein CLOSS21_01117 [Clostridium sp. SS2/1] gi|217992849|gb|EEC58849.1| hypothetical protein BACPEC_00097 [Bacteroides pectinophilus ATCC 43243] gi|224955739|gb|EEG36948.1| hypothetical protein EUBHAL_01184 [Eubacterium hallii DSM 3353] gi|291526845|emb|CBK92431.1| Helix-turn-helix [Eubacterium rectale M104/1] gi|291535072|emb|CBL08184.1| Helix-turn-helix [Roseburia intestinalis M50/1] gi|291558633|emb|CBL37433.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|323399097|gb|EGA91505.1| hypothetical protein HMPREF9474_04639 [Clostridium symbiosum WAL-14163] Length = 209 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 RGETDEYETDIT 81 >gi|291523416|emb|CBK81709.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 209 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|228937302|ref|ZP_04099955.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822360|gb|EEM68336.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 127 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 VGK I+ R I G+S++++ E L T++ V +E G + ++L+ I+ L Sbjct: 8 VGKNIKKLRAIKGVSRKEMAEDLNTTYRTVSSWETGEKKPRLNKLEEIASYL 59 >gi|269955724|ref|YP_003325513.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304405|gb|ACZ29955.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 505 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G+RIR R GM+ + L +G QV E G +RLQ ++ L + Sbjct: 24 PDALTIGRRIRHLRTERGMTLDDLAAAIGKAPSQVSLLENGKREPTIARLQAVARALGAG 83 Query: 70 ISFFFDVSP 78 + D P Sbjct: 84 VEDLLDPRP 92 >gi|260589105|ref|ZP_05855018.1| putative DNA-binding protein [Blautia hansenii DSM 20583] gi|260540525|gb|EEX21094.1| putative DNA-binding protein [Blautia hansenii DSM 20583] Length = 45 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 29/41 (70%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 I +GK I +R LGM+Q++L E +G++ + V K+E GV++ Sbjct: 4 IKIGKYIAGKRKSLGMTQKQLAEKIGMSDKSVSKWESGVSQ 44 >gi|331015083|gb|EGH95139.1| hypothetical protein PLA106_04022 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 83 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 35/70 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G++IR RR+ G++Q +L +T Q+V EKG VG + + L+ + Sbjct: 6 ITTRLGEQIRQRRLNRGLTQARLAALAAVTRQKVIAIEKGDLSVGMTAYARVLGALDCEL 65 Query: 71 SFFFDVSPTV 80 S PT+ Sbjct: 66 SVIPAAMPTL 75 >gi|289449565|ref|YP_003474504.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184112|gb|ADC90537.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 210 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKMIADALGVTVDYLL 62 Query: 75 D 75 D Sbjct: 63 D 63 >gi|283796930|ref|ZP_06346083.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075340|gb|EFE12704.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 111 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 5/109 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SP 69 +D +GKR++ R LG+SQE+L E G+T + E+G++ +L + LE S Sbjct: 2 IDKRIGKRVKQCRERLGISQEELAEKTGLTANYISTVERGMSFPRCEKLIILLNGLEVSA 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + F DV S SSE + + +S Q + +Q+ ++ ++Q+ Sbjct: 62 DAIFCDVLEHSTSYKSSELSEKLASLSP----QAQKRILQMVELMIQQE 106 >gi|167628808|ref|YP_001679307.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] gi|167591548|gb|ABZ83296.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] Length = 119 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISF 72 ++G RI+ R G++Q +L + L ++ Q + +E+G + + ++ +LE+ F Sbjct: 3 SIGNRIKHLRKQRGLTQPQLAKLLNVSPQVISNWERGYTPTIAPESIDKLASILETTSDF 62 Query: 73 FFDVS-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 S ++ S + + E S P+G+++ R + + ++ I+EL+ + V +E Sbjct: 63 LLGRSTASISSSLEALEK------SWPEGIKVLRRANEKLTPEKKRVILELIDTYVRTEG 116 Query: 132 KY 133 + Sbjct: 117 NH 118 >gi|238925837|ref|YP_002939355.1| hypothetical protein EUBREC_3495 [Eubacterium rectale ATCC 33656] gi|238877514|gb|ACR77221.1| Hypothetical protein EUBREC_3495 [Eubacterium rectale ATCC 33656] gi|295098807|emb|CBK87896.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 209 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|209546022|ref|YP_002277912.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538879|gb|ACI58812.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFF 74 P++ FF Sbjct: 94 PMTAFF 99 >gi|168184253|ref|ZP_02618917.1| helix-turn-helix domain protein [Clostridium botulinum Bf] gi|182672621|gb|EDT84582.1| helix-turn-helix domain protein [Clostridium botulinum Bf] Length = 216 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++Q++L E LGI Q + ++ KG ++ L ++SE + P+ +F Sbjct: 10 LYNLTQQELAEELGIKKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYF 58 >gi|163731540|ref|ZP_02138987.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161394994|gb|EDQ19316.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 429 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 26/52 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G RIR RR + G+ Q L LGI+ + E R+G L I+ VL Sbjct: 7 IGSRIRERRSVAGLKQADLARSLGISPSYLNLIEHNRRRIGGKLLLDIARVL 58 >gi|322834913|ref|YP_004214940.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321170114|gb|ADW75813.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 95 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G RI R G++Q KL E LGI Q + YE ++ AS L +S +L+ I Sbjct: 21 LALGVRIAEARKSKGLTQRKLAEMLGIAQQTLAHYEVARLKLSASFLPELSRILDCTI 78 >gi|320321186|gb|EFW77327.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 121 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS F Sbjct: 15 VGAKIKALRKLSGMSQAVLAEKIGCDAPLVGCYERGIHLPGVEQLIK--------ISMAF 66 Query: 75 DVSP 78 DV+P Sbjct: 67 DVAP 70 >gi|315038706|ref|YP_004032274.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] gi|312276839|gb|ADQ59479.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] Length = 135 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 RIR R G+SQ KL + GI + ++E G++ G RL+ I++ L +++ Sbjct: 3 RIREIRKKQGISQSKLAQLTGIPTSTLSEFENGLHDPGEDRLRKIAQALNVSLNY 57 >gi|222053702|ref|YP_002536064.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221562991|gb|ACM18963.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R + M+QEKL E +G+ + V E G + ++ I++ L+ + F Sbjct: 8 LGARIKELRKLRKMTQEKLAEQIGVDPKYVSFIEVGRSSPSLEAMEKIAQALDVEMKDMF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D S ++S E+ + M T D L++ Sbjct: 68 DFSHHEAREVSIEQIDEMLSGVTEDQLKI 96 >gi|332158049|ref|YP_004423328.1| hypothetical protein PNA2_0406 [Pyrococcus sp. NA2] gi|331033512|gb|AEC51324.1| hypothetical protein PNA2_0406 [Pyrococcus sp. NA2] Length = 316 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 36/70 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++++ R G + +L LGI+ + +Q+YEKG + V + E+ + P+ D Sbjct: 128 GRKLKMLREEHGYTLAELARILGISRKSLQRYEKGESVVSVEVALRLEEIFDEPLVKPID 187 Query: 76 VSPTVCSDIS 85 V D+S Sbjct: 188 VLKARLEDVS 197 >gi|291530482|emb|CBK96067.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 209 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|225851327|ref|YP_002731561.1| transcriptional regulator, xre family [Persephonella marina EX-H1] gi|225645748|gb|ACO03934.1| transcriptional regulator, xre family [Persephonella marina EX-H1] Length = 159 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N+G+RI+ R +LG+SQ + E +G + + VQ +E S L+ IS+ Sbjct: 3 NIGQRIKQLRKMLGLSQREFAEKIGKSLRAVQNWEYEQRTPDESTLRLISQTF 55 >gi|189423256|ref|YP_001950433.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189419515|gb|ACD93913.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 160 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+ IR +RM LG+ Q ++ E +G+T + +E G LQ+ +++ Sbjct: 34 ITVGEHIRKKRMDLGLLQREVAEIIGVTESSIWNWEHGTE----PELQYNPRIIK----- 84 Query: 73 FFDVSPTVCSD 83 F P C D Sbjct: 85 FLGYIPFDCPD 95 >gi|217975334|ref|YP_002360085.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217500469|gb|ACK48662.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 103 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 8/73 (10%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQH 61 KI NP+ I R++ R+ G+SQ++LG LG+ ++ +YEKG + L+ Sbjct: 4 KIINPLPI----RLKQARISKGISQKQLGIQLGMEVGSASARMNQYEKGKHTPDYKTLKA 59 Query: 62 ISEVLESPISFFF 74 ++ L P+++FF Sbjct: 60 MANELGVPVAYFF 72 >gi|148259560|ref|YP_001233687.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402766|ref|YP_004282847.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401241|gb|ABQ29768.1| putative transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325049627|dbj|BAJ79965.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 203 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 35/74 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D VG R+R R I G++Q +L G+T + E+G S L+ I + + + Sbjct: 21 ADAGVGARLRRMRQIFGLTQRELARRAGVTNGAISLIEQGRVSPSISSLKKILDGIPMSL 80 Query: 71 SFFFDVSPTVCSDI 84 + FF + T D+ Sbjct: 81 AEFFTLDLTAPEDV 94 >gi|317501524|ref|ZP_07959721.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897079|gb|EFV19153.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G+ I+ R M Q++L + +GI Q + K E+GVN L+ I +VLE Sbjct: 11 LGENIQTIRKHRKMKQQELADAIGINMQSLSKIERGVNYPTFDTLEKIMDVLE 63 >gi|307069657|ref|YP_003878134.1| putative imidazoleglycerol-phosphate dehydratase [Candidatus Zinderia insecticola CARI] gi|306482917|gb|ADM89788.1| putative imidazoleglycerol-phosphate dehydratase [Candidatus Zinderia insecticola CARI] Length = 197 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 19/27 (70%) Query: 31 EKLGECLGITFQQVQKYEKGVNRVGAS 57 E +G CLG F ++ KY+KG+NR G S Sbjct: 73 EDIGICLGKIFNKLLKYKKGINRYGLS 99 >gi|227537296|ref|ZP_03967345.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242799|gb|EEI92814.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 354 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R + R++ G S + L + LG ++ Q + +YEKG A ++ +S+ L+ +F Sbjct: 8 AERFKSARLMNGFSLQDLADALGNKLSRQALHRYEKGEVIPDAEKINMLSKALKVSSDYF 67 Query: 74 FDVSPTVCSDI 84 F + SD+ Sbjct: 68 FRTTKVELSDV 78 >gi|210614272|ref|ZP_03290143.1| hypothetical protein CLONEX_02356 [Clostridium nexile DSM 1787] gi|210150756|gb|EEA81765.1| hypothetical protein CLONEX_02356 [Clostridium nexile DSM 1787] Length = 209 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 RGETDEYETDIT 81 >gi|284007818|emb|CBA73695.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ RR L +SQ L LGI + ++E+ + L +++ L S+ Sbjct: 5 TLGERIKARRQELKLSQRALASILGIAHVSISQWERNESTPKGENLMALAKTLHCEPSWL 64 Query: 74 FD 75 F+ Sbjct: 65 FE 66 >gi|266623939|ref|ZP_06116874.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288864240|gb|EFC96538.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 147 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVL-ESPI 70 +N+G+RIR R M+Q +L E +G T Q V KYE G V + +L +++ L +P Sbjct: 1 MNIGERIRGLREKQEMTQTELAEKIGSTKQTVYKYENGVVTNIPYDKLILLAKALGTTPS 60 Query: 71 SFF-FD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 S +D + + + + +N +I +LN Y I + D +V+ Sbjct: 61 SLMGWDKIEEAINEEFTRLDNLTKQYILL---FELNGYKIDVGDEQVK 105 >gi|145299927|ref|YP_001142768.1| DNA-binding transcriptional repressor PuuR [Aeromonas salmonicida subsp. salmonicida A449] gi|142852699|gb|ABO91020.1| transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 187 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 9 NPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 NP+ D ++G+R+ R LG+SQ ++ E G+T + E+ + LQ + V E Sbjct: 4 NPLMDKSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASLQKLLNVYE 63 Query: 68 SPISFFF 74 P+S FF Sbjct: 64 LPLSRFF 70 >gi|325000733|ref|ZP_08121845.1| transcriptional regulator, XRE family protein [Pseudonocardia sp. P1] Length = 84 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 36/64 (56%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 G++Q++LGE +G++ Q V + E G + ++ VLE+P+ F ++ +D+ + Sbjct: 20 GLTQKRLGELVGVSRQTVVEIEAGGYNPSTAVALRMAVVLETPVGELFALADGEVADLRA 79 Query: 87 EENN 90 ++ Sbjct: 80 RRDD 83 >gi|314939500|ref|ZP_07846732.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314944174|ref|ZP_07850819.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951901|ref|ZP_07854933.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994467|ref|ZP_07859746.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314997871|ref|ZP_07862772.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313588096|gb|EFR66941.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591122|gb|EFR69967.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313595935|gb|EFR74780.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597236|gb|EFR76081.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313641201|gb|EFS05781.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 254 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIRL R LG+S ++ G+ + T V ++E+G++ RL I+++ I++ Sbjct: 8 VGNRIRLVRKELGLSMKEFGKKITPTAADSIVSRWERGISLPNNDRLTQIAKIAHKDINW 67 >gi|223983578|ref|ZP_03633760.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] gi|223964464|gb|EEF68794.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] Length = 353 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 36/62 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR RR LG++Q+++ E LG++ V K+E G + + L ++ +L++ ++ Sbjct: 1 MKINEVIRQRRKELGLTQDRVAELLGVSAPAVNKWENGNSYPDITLLPPLARLLKTDLNT 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|93007412|ref|YP_579176.1| transcriptional regulator [Streptomyces phage mu1/6] gi|90568490|gb|ABD94169.1| transcriptional regulator [Streptomyces phage mu1/6] Length = 93 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG RIR R+ G+SQ L +G+ + + + E GV+ + + I+ L P Sbjct: 30 DVGARIRELRLAAGLSQVDLSHRIGVDHRTISRAENGVHAISIDQAYRIATALGQPSWRL 89 Query: 74 F 74 F Sbjct: 90 F 90 >gi|89899047|ref|YP_521518.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343784|gb|ABD67987.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 197 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 35/66 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R RR I G++ +L + G++ + + E+G++ + I L P+S+ Sbjct: 14 MGLGMQVRQRRRIKGLTLTELSQQSGLSVGLLSQIERGLSSPSLKSMTQICTALGVPLSW 73 Query: 73 FFDVSP 78 FD P Sbjct: 74 LFDNGP 79 >gi|37528124|ref|NP_931469.1| hypothetical protein plu4293 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787561|emb|CAE16665.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 33/72 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN V G+R+R R GMSQE + GI + E+GV + I+ Sbjct: 2 KKPNAVKFLFGQRVRYFRQSSGMSQEAFADKCGIDRTYISGIERGVRNPTLEIINIIASG 61 Query: 66 LESPISFFFDVS 77 L+ ++ FD S Sbjct: 62 LQIELTDLFDFS 73 >gi|291539287|emb|CBL12398.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 209 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 RGETDEYETDIT 81 >gi|239617046|ref|YP_002940368.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] gi|239505877|gb|ACR79364.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] Length = 351 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R+ MS KL E +G++ + KYE+ + + L +S+ L + + Sbjct: 1 MSIGSRIKQARIRNNMSLRKLSEKVGVSAMAISKYERDEDVPSSKVLIRLSKALNVKVEY 60 Query: 73 FF--DVSP 78 FF D+ P Sbjct: 61 FFRPDLFP 68 >gi|254454592|ref|ZP_05068029.1| DNA-binding protein [Octadecabacter antarcticus 238] gi|198268998|gb|EDY93268.1| DNA-binding protein [Octadecabacter antarcticus 238] Length = 189 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 35/67 (52%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P +G IR R G++ LG+ LG + + + E+ ++ + L+HI+ VL+ Sbjct: 5 PSPEIHTLGADIRALRKARGLTLSGLGKTLGRSVGWLSQVERDMSEPSITDLRHIASVLD 64 Query: 68 SPISFFF 74 +S F Sbjct: 65 VSVSSLF 71 >gi|313625620|gb|EFR95300.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria innocua FSL J1-023] Length = 111 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G++QE L E L T Q + +YE G + L ++++ + FF Sbjct: 7 VGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFF 66 >gi|154499861|ref|ZP_02037899.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] gi|150271459|gb|EDM98716.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] Length = 409 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 24/37 (64%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 + +G+RI R G+SQE LGE +G++ Q V K+E Sbjct: 1 MTLGQRIAALRKEKGLSQEGLGELVGVSRQAVSKWEA 37 >gi|332686955|ref|YP_004456729.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] gi|332370964|dbj|BAK21920.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] Length = 236 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + +G+RI+ RR L +S + + E LG++ + +YEKG + ++ + L++I+ +L + + Sbjct: 1 MTIGERIKARRKELKLSADIVAEKLGVSRSTIFRYEKGDIEKLPTNILENIAIILHTSPA 60 Query: 72 FFF 74 + Sbjct: 61 YLM 63 >gi|302390667|ref|YP_003826488.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302201295|gb|ADL08865.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 114 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+R++ R G++Q+++ + LGI Q+ YE G + + LQ ++ + I +F Sbjct: 8 SLGERLQEARKKCGLTQDQVAKILGINKVQLSYYETGAREINITLLQELANLYGYSIDYF 67 Query: 74 F 74 Sbjct: 68 L 68 >gi|194467602|ref|ZP_03073589.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454638|gb|EDX43535.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 110 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLE 67 N+ + I +R L ++QEKL E ++ + K E+G +R V A LQH++ LE Sbjct: 3 NLSQNIVKQRHALHLTQEKLAEKARMSVNFLSKLERGASRTVSAETLQHLANALE 57 >gi|312126603|ref|YP_003991477.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776622|gb|ADQ06108.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 119 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 8/83 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R+ G+SQE+LG+ L ++ + + YE G L +++ I + Sbjct: 4 RIRELRLERGLSQEELGKVLNVSGRTIGHYENGSREPTPEALNKLADFFGVTIDYL---- 59 Query: 78 PTVC-SDI-SSEENNVMDFISTP 98 +C +D+ S+E+ + D + TP Sbjct: 60 --LCRTDVRSTEKQDTKDKLQTP 80 >gi|269964620|ref|ZP_06178858.1| hypothetical protein VMC_02880 [Vibrio alginolyticus 40B] gi|269830519|gb|EEZ84740.1| hypothetical protein VMC_02880 [Vibrio alginolyticus 40B] Length = 374 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE-KG-VNRVGASRLQHISEVLESPISFFFD 75 R+++ R G +++ L E GIT + + YE KG ++ ++ + I+++L P+ FF+ Sbjct: 6 RLKIARERRGYTKKALAELTGITTRTLSTYENKGLLDTTDSTLVSRIADILNYPVEFFYA 65 Query: 76 VSP 78 +P Sbjct: 66 DNP 68 >gi|321159775|pdb|3LFP|A Chain A, Crystal Structure Of The Restriction-Modification Controller Protein C.Csp231i gi|321159777|pdb|3LIS|A Chain A, Crystal Structure Of The Restriction-Modification Controller Protein C.Csp231i (Monoclinic Form) gi|321159778|pdb|3LIS|B Chain B, Crystal Structure Of The Restriction-Modification Controller Protein C.Csp231i (Monoclinic Form) gi|60418612|gb|AAX19732.1| Csp231I C protein [Citrobacter sp. RFL231] Length = 98 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQEKLG GI ++ +YEKG + +++VL+ P+S+ Sbjct: 4 RRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSY 63 Query: 73 FF 74 + Sbjct: 64 LY 65 >gi|290769910|gb|ADD61680.1| putative protein [uncultured organism] Length = 209 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|153955543|ref|YP_001396308.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855938|ref|YP_002473060.1| hypothetical protein CKR_2595 [Clostridium kluyveri NBRC 12016] gi|146348401|gb|EDK34937.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569662|dbj|BAH07646.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 109 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 37/71 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRIR R+ L ++QEKL E + ++ V + E+G V L I++ L + + Sbjct: 4 IALGKRIREERLKLRLTQEKLAEDVDVSSSYVGQIERGEKSVTLDTLIRITKRLGVTVDY 63 Query: 73 FFDVSPTVCSD 83 S + +D Sbjct: 64 LLKDSVNMEND 74 >gi|320354394|ref|YP_004195733.1| XRE family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122896|gb|ADW18442.1| transcriptional regulator, XRE family [Desulfobulbus propionicus DSM 2032] Length = 436 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P ++G RI+ R G+SQ++L E G+T + + EK + L ++E L Sbjct: 249 PLPGRFDLGARIKAVRKKQGLSQKELAEKAGVTPSSISQIEKNLIYPSLPALFRLAESLS 308 Query: 68 SPISFFFD 75 ++ FF+ Sbjct: 309 IGVASFFE 316 >gi|319937527|ref|ZP_08011932.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] gi|319807367|gb|EFW03976.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] Length = 182 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G++IR R+ +SQE + + L ++ Q V K+EKG+++ L +SE+ + Sbjct: 3 IGEKIRELRIRNQLSQESIAQLLDVSRQSVSKWEKGLSKPSTDNLLRLSEIFSVSV 58 >gi|315274405|ref|ZP_07869367.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] gi|313615952|gb|EFR89134.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] Length = 111 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G++QE L E L T Q + +YE G + L ++++ + FF Sbjct: 7 VGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFF 66 >gi|291543337|emb|CBL16446.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus sp. 18P13] Length = 110 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R G+SQEKL E G + + E+G ++ I+ ++ +S F Sbjct: 8 IGQRIRNYRTQKGLSQEKLAELAGCHPTYIGQLERGEKNATLESVEKIASAMDISLSELF 67 Query: 75 D-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 D + + ++I+++ +++ + + QL + ++D K Sbjct: 68 DKLGKSGSNNIAAKCYDLVASKNEAEQKQLYKMLQEMDKYK 108 >gi|302866468|ref|YP_003835105.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315502877|ref|YP_004081764.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5] gi|302569327|gb|ADL45529.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca ATCC 27029] gi|315409496|gb|ADU07613.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5] Length = 214 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G++ L G++ + + E+G++ +G + L +++ L+ ++ FF Sbjct: 28 VGGRIRRYRKERGLTLRGLASRSGLSIGFLSQVERGISSIGLTALGSVAKALDRSVADFF 87 Query: 75 DVSPTVCSD 83 D T D Sbjct: 88 DAG-TAAPD 95 >gi|210620982|ref|ZP_03292367.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] gi|210154966|gb|EEA85972.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] Length = 204 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G +I+ R M+ + + E ++ + + E+G+ V L+ I++VLE +++F Sbjct: 4 NIGAKIKRLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLEKIADVLEVDLTYF 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|197284093|ref|YP_002149965.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227358035|ref|ZP_03842377.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194681580|emb|CAR40549.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227161770|gb|EEI46802.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 98 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-S 68 P+ +G +IR +R L +S + + E +G++ QQ +YE G+ ++ L I++ L + Sbjct: 6 PISQIIGHKIRQQRQHLRLSAKAVAERVGVSQQQFSRYENGLCKIDVDMLFLIAKELNVT 65 Query: 69 PISFF 73 P +F Sbjct: 66 PTAFL 70 >gi|167461941|ref|ZP_02327030.1| hypothetical protein Plarl_05195 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 68 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ GM+Q +L G+++ + E+ V VG + + +SEVL P+ F Sbjct: 14 RVLQGMTQRELANKCGLSYAYISLLERSVKPVGPATAKKLSEVLNRPMEELF 65 >gi|16802162|ref|NP_463647.1| hypothetical protein lmo0114 [Listeria monocytogenes EGD-e] gi|46906354|ref|YP_012743.1| repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092250|ref|ZP_00230042.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|47095185|ref|ZP_00232797.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|116871527|ref|YP_848308.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217965783|ref|YP_002351461.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|224498185|ref|ZP_03666534.1| helix-turn-helix domain protein [Listeria monocytogenes Finland 1988] gi|224502962|ref|ZP_03671269.1| helix-turn-helix domain protein [Listeria monocytogenes FSL R2-561] gi|226222753|ref|YP_002756860.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes Clip81459] gi|254827546|ref|ZP_05232233.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254832362|ref|ZP_05237017.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes 10403S] gi|254899558|ref|ZP_05259482.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes J0161] gi|254913239|ref|ZP_05263251.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937620|ref|ZP_05269317.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|254991791|ref|ZP_05273981.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-064] gi|255016940|ref|ZP_05289066.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL F2-515] gi|255022366|ref|ZP_05294352.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-208] gi|255025309|ref|ZP_05297295.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-003] gi|255028080|ref|ZP_05300031.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes LO28] gi|255519835|ref|ZP_05387072.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-175] gi|284803147|ref|YP_003415012.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284996288|ref|YP_003418056.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|12054764|emb|CAC20620.1| AX protein [Listeria monocytogenes] gi|16409473|emb|CAC98329.1| lmo0114 [Listeria monocytogenes EGD-e] gi|46879618|gb|AAT02920.1| putative prophage LambdaLm01, repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47016530|gb|EAL07451.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|47019452|gb|EAL10193.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|116740405|emb|CAK19525.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217335053|gb|ACK40847.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|225875215|emb|CAS03909.1| Putative repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599922|gb|EEW13247.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258610220|gb|EEW22828.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284058709|gb|ADB69650.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284061755|gb|ADB72694.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|293591239|gb|EFF99573.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|307569672|emb|CAR82851.1| repressor protein, putative [Listeria monocytogenes L99] gi|313611579|gb|EFR86184.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria monocytogenes FSL F2-208] gi|328468450|gb|EGF39456.1| hypothetical protein LM1816_04172 [Listeria monocytogenes 1816] gi|328472713|gb|EGF43568.1| hypothetical protein LM220_04442 [Listeria monocytogenes 220] gi|332310528|gb|EGJ23623.1| Bacteriophage-type repressor [Listeria monocytogenes str. Scott A] Length = 111 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G++QE L E L T Q + +YE G + L ++++ + FF Sbjct: 7 VGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFF 66 >gi|291548981|emb|CBL25243.1| Predicted transcriptional regulator [Ruminococcus torques L2-14] gi|295110023|emb|CBL23976.1| Predicted transcriptional regulator [Ruminococcus obeum A2-162] Length = 211 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVL 62 >gi|170759959|ref|YP_001786812.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169406948|gb|ACA55359.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 218 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++Q++L E LGI Q + ++ KG ++ L +++E + PI +F Sbjct: 10 LYNLTQQELAEELGIKKQNINQWFKGSRKIPKKYLSYLNEKFKIPIDYF 58 >gi|307322306|ref|ZP_07601670.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306892049|gb|EFN22871.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 161 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE-SPISFFFDVSPTVCSDI 84 G+S+ L LG++ +YE+G R+ RL H+ E++ P+ FD++P + Sbjct: 52 GISRADLAHLLGLSVSVYGRYERGSEARLSIPRLIHLCEIMGFMPLDVIFDIAPHLWGKT 111 Query: 85 SSEENNVMDFI 95 E + + + Sbjct: 112 LEEAEDRLTLM 122 >gi|291551231|emb|CBL27493.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 209 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|257869747|ref|ZP_05649400.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803911|gb|EEV32733.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 211 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVL 62 >gi|254831247|ref|ZP_05235902.1| hypothetical protein Lmon1_07812 [Listeria monocytogenes 10403S] Length = 158 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KR+ R G SQ KL + LG + QV YE+G L I+E FF+ Sbjct: 3 SKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAE--------FFN 54 Query: 76 VSPTVCSDISSEENNVMDFIST 97 VS + ++NN+ D I+ Sbjct: 55 VSTDYL--LGRDDNNLADTIAA 74 >gi|321272346|gb|ADW80227.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 236 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G +I R++ G +Q KL +G+T +++ +E G + I+ L + Sbjct: 24 VNYELGXKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIAGALSVNV 83 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 PTV + E+ + + L + +I D ++R+K+ LVR + SE Sbjct: 84 VDLLP-GPTVLRENGWYEDEDKEIV------YLTKIHREIKDQELRKKLYPLVRFVYISE 136 Query: 131 K 131 K Sbjct: 137 K 137 >gi|322388682|ref|ZP_08062281.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140471|gb|EFX35977.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 228 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 15/73 (20%), Positives = 41/73 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LG+++Q +E+GV + +++ + +L+ +F ++ Sbjct: 5 EKLKARRKELKMTQKDIADQLGVSYQAYSAWERGVKQPSREKVKLLEHILKVSKGYFTEL 64 Query: 77 SPTVCSDISSEEN 89 + S+E+ Sbjct: 65 EIVRLYNTLSDED 77 >gi|260855310|ref|YP_003229201.1| putative phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|260868064|ref|YP_003234466.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|293405073|ref|ZP_06649065.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298380719|ref|ZP_06990318.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|331652950|ref|ZP_08353955.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331683077|ref|ZP_08383678.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] gi|257753959|dbj|BAI25461.1| predicted phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|257764420|dbj|BAI35915.1| predicted phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|291427281|gb|EFF00308.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298278161|gb|EFI19675.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|320646852|gb|EFX15716.1| transcriptional repressor DicA [Escherichia coli O157:H- str. 493-89] gi|320663403|gb|EFX30700.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. USDA 5905] gi|331049048|gb|EGI21120.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331079292|gb|EGI50489.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] Length = 135 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ SP Sbjct: 6 LGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 65 Query: 74 F---DVSPT 79 F D +P Sbjct: 66 FGDEDKTPA 74 >gi|239928289|ref|ZP_04685242.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291436618|ref|ZP_06576008.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291339513|gb|EFE66469.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] Length = 509 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+ IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 7 VRIGRLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|160913567|ref|ZP_02076257.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] gi|158434028|gb|EDP12317.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] Length = 227 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++QE+LGE LG+T + + K+E G + S + + ++LE + FD Sbjct: 19 GLTQEQLGELLGVTNKSISKWENGKSLPDPSLYKPLCDILEINLIELFD 67 >gi|295111675|emb|CBL28425.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Synergistetes bacterium SGP1] Length = 233 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 37/79 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G RI RR LGM + +L E LG+ + +YE G + S I++ L + Sbjct: 5 AEAGIGARIMARRKALGMKRPELAERLGVKPNTLYRYEIGSIGIRDSMKSRIAKELGVSL 64 Query: 71 SFFFDVSPTVCSDISSEEN 89 ++ + V + SEE Sbjct: 65 AYLVSGTAEVGRERGSEET 83 >gi|284009381|emb|CBA76570.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 11/113 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+RIRLRR L ++Q++LG+ +G++ + ++EK L +++ L + Sbjct: 5 SIGERIRLRRKELELTQKQLGKRVGVSHVAISQWEKEETEPKGDNLLSLADALMCTAEYI 64 Query: 74 F----DVSPTVC-------SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P C S ++ E N+++ + + Y +I + + Sbjct: 65 LRGTTSEKPIRCDNDTYKYSRLTKREENLLEMFNALTEDEQKNYLKEITETRA 117 >gi|226950004|ref|YP_002805095.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843764|gb|ACO86430.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 218 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++Q++L E LGI Q + ++ KG ++ L ++SE + P+ +F Sbjct: 10 LYNLTQQELAEELGIKKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYF 58 >gi|300825194|ref|ZP_07105283.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|300522313|gb|EFK43382.1| helix-turn-helix protein [Escherichia coli MS 119-7] Length = 367 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++L RM +G+S E+L E +G T Q V K EKG R L+ I+ L F F Sbjct: 13 GDKLKLARMAVGLSCEELAEKIGKTKQFVSKLEKGF-RPSEQCLELIASALMIKSDFLF 70 >gi|296314367|ref|ZP_06864308.1| putative helix-turn-helix protein [Neisseria polysaccharea ATCC 43768] gi|296838924|gb|EFH22862.1| putative helix-turn-helix protein [Neisseria polysaccharea ATCC 43768] Length = 112 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ IR R G +Q++L + + + E G S L+++SE L+ P+S Sbjct: 1 MNISHAIRFLRKQKGWTQQQLADFANTSKSNISNLENGNQGYSESILKYLSEALDCPVSS 60 Query: 73 FFDVSPTVCSDISSEENNVMD------FISTPDGLQ 102 F ++ ++ ++ N+ D F+ P LQ Sbjct: 61 IFLLAESLERQQNNTATNMEDMPIELIFMQLPKPLQ 96 >gi|266619976|ref|ZP_06112911.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288868440|gb|EFD00739.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 260 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+++ R G+SQE L E L T Q + K+E +L +S++ + P+ F Sbjct: 1 MNFGEKLFNLRKEKGLSQEALAEQLNTTRQAISKWENNHGYPETEKLLKLSDIFQVPVDF 60 Query: 73 FFDVSPTV----CSDISSEENNVMDFISTPDGLQLNRYF 107 + + +I + ++S+ +NRYF Sbjct: 61 LLKETTGIENQNSGNIYVTREMAVSYLSSES--MVNRYF 97 >gi|302537531|ref|ZP_07289873.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] gi|302446426|gb|EFL18242.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] Length = 509 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L + LG + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|254386053|ref|ZP_05001368.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] gi|194344913|gb|EDX25879.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] Length = 509 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L + LG + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 237 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N R++ R+ ++QE+LG+ + +T + YE G LQ I+EV + I F Sbjct: 1 MNFPTRLKKLRLEHKLTQEQLGKKINVTKVSISGYENGTRTPDIETLQKIAEVFDVTIDF 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|300694677|ref|YP_003750650.1| phage regulatory protein [Ralstonia solanacearum PSI07] gi|299076714|emb|CBJ36054.1| putative phage regulatory protein [Ralstonia solanacearum PSI07] Length = 118 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +G+R+ R G++Q++L E LGI Q + YE G R+ AS Sbjct: 11 ELGERVAEARKAHGLTQQQLAEALGIAQQTLAHYEVGRARLPAS 54 >gi|254384564|ref|ZP_04999904.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194343449|gb|EDX24415.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 389 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 35/68 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R + M+++ + LG+T V +YE GV++ + ++E+L P++FF Sbjct: 30 RLTQARRLAEMTKKDVATQLGVTPAAVGQYETGVSKPRPDLIPRLAEILGVPVTFFLLGR 89 Query: 78 PTVCSDIS 85 P D S Sbjct: 90 PANRLDAS 97 >gi|167747793|ref|ZP_02419920.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] gi|167653155|gb|EDR97284.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] Length = 352 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 12/86 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR R+ G++QE++ LG++ V K+EK V+ + L ++ +LE+ ++ Sbjct: 1 MKINEMIRELRIKKGLTQEQMASLLGVSAPAVNKWEKAVSYPDITLLPALARLLETDLNT 60 Query: 73 F--FDVSPT----------VCSDISS 86 F PT + +D+SS Sbjct: 61 LLSFKEEPTKEEITDFLNELAADVSS 86 >gi|328954829|ref|YP_004372162.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328455153|gb|AEB06347.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 72 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 14 NVGKRIRL-RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+L RR G+SQEK GI + + E+G +R+ S L+ I++ L+ +S Sbjct: 8 QIGARIQLLRRARTGLSQEKFSVAAGIDYSYLAGVEQGRHRLSVSMLKRIADGLDLSMS 66 >gi|322390898|ref|ZP_08064406.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis ATCC 903] gi|321142411|gb|EFX37881.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis ATCC 903] Length = 108 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRIR+ R GM+QE+L E + K E + S L+ I E L + FF Sbjct: 8 ISKRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIEALNVDLQTFF 67 Query: 75 DVS 77 D++ Sbjct: 68 DLT 70 >gi|260844501|ref|YP_003222279.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|260854336|ref|YP_003228227.1| putative repressor protein [Escherichia coli O26:H11 str. 11368] gi|257752985|dbj|BAI24487.1| predicted repressor protein [Escherichia coli O26:H11 str. 11368] gi|257759648|dbj|BAI31145.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|323152493|gb|EFZ38776.1| helix-turn-helix family protein [Escherichia coli EPECa14] Length = 130 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS 85 L ++Q +LG LG+ Q VQ + KGV +L+ ++E+ + P+ +FF T+ ++ Sbjct: 14 LNINQSELGRRLGVKPQSVQGWLKGV-MPRMDKLEKLAELSQHPVHWFFMEEETLGDKMA 72 Query: 86 SEENN 90 N+ Sbjct: 73 VSSND 77 >gi|192361034|ref|YP_001984168.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190687199|gb|ACE84877.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] Length = 72 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FF 73 GKR++ R M+QE+L E +GIT + + E+G+ L+ ++ L P+ F Sbjct: 8 GKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVPVQSLFA 67 Query: 74 FD 75 FD Sbjct: 68 FD 69 >gi|332664458|ref|YP_004447246.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333272|gb|AEE50373.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 352 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+ R + G+S + L + + +T Q + KYEKG G++ L +S+ L + FF Sbjct: 6 GQRLTSARKMAGLSLQNLADKMENAVTRQALNKYEKGEMMPGSTVLIRLSKALNVTVDFF 65 Query: 74 F 74 F Sbjct: 66 F 66 >gi|253987940|ref|YP_003039296.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779390|emb|CAQ82551.1| similar to transcription regulator and to restriction enzyme control elements [Photorhabdus asymbiotica] Length = 78 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 34/74 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN + G+R+R RM GMSQE + G+ + E+GV + I+ Sbjct: 2 KKPNNIKSLFGQRVRYIRMASGMSQEAFADRCGLDRTYISGIERGVRNPTLEVINVIASG 61 Query: 66 LESPISFFFDVSPT 79 L+ + FD S + Sbjct: 62 LQIELKDLFDFSSS 75 >gi|16799238|ref|NP_469506.1| hypothetical protein lin0161 [Listeria innocua Clip11262] gi|16412580|emb|CAC95394.1| lin0161 [Listeria innocua Clip11262] Length = 117 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G++QE L E L T Q + +YE G + L ++++ + FF Sbjct: 13 VGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFF 72 >gi|269120006|ref|YP_003308183.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268613884|gb|ACZ08252.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 142 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 17/92 (18%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQ 60 +GNK I N R++ +R+ L S + L + GIT +Q+YE G +N++ +L+ Sbjct: 1 MGNKDIAN--------RMKRQRLNLEYSYKDLEKITGITASTLQRYETGAINKLPIDKLE 52 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVM 92 I++ L+ VSP+ E+ N + Sbjct: 53 VIAKALK--------VSPSYLMGWEDEKGNPL 76 >gi|160916078|ref|ZP_02078285.1| hypothetical protein EUBDOL_02105 [Eubacterium dolichum DSM 3991] gi|158431802|gb|EDP10091.1| hypothetical protein EUBDOL_02105 [Eubacterium dolichum DSM 3991] Length = 129 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 G +QE+L L + Q V K+EKG++ A L I+++L++ +S T+ +I Sbjct: 6 GYTQEELAIKLNVVRQTVSKWEKGLSVPDAHILSKIADILDTKVSILL--GSTISDEI-- 61 Query: 87 EENNVMD 93 +EN V + Sbjct: 62 DENAVAE 68 >gi|302541197|ref|ZP_07293539.1| XRE family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458815|gb|EFL21908.1| XRE family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 412 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 P ++ G RI+L R G+SQ LG +G + V K E+GV Sbjct: 7 PRELTTGDRIKLYRQRKGLSQAALGGLIGRSEDWVSKVERGV 48 >gi|302522509|ref|ZP_07274851.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|318058819|ref|ZP_07977542.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actG] gi|318075294|ref|ZP_07982626.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actF] gi|333023793|ref|ZP_08451857.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] gi|302431404|gb|EFL03220.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|332743645|gb|EGJ74086.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] Length = 509 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G SQ +L E L + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|258516796|ref|YP_003193018.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780501|gb|ACV64395.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 133 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 27/42 (64%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 +N+G RIR +R++ +Q++L E + ++ Q + +E+G V Sbjct: 1 MNIGNRIRTQRILKDFTQKQLAELVNVSPQVISNWERGYTPV 42 >gi|226322382|ref|ZP_03797900.1| hypothetical protein COPCOM_00150 [Coprococcus comes ATCC 27758] gi|225209240|gb|EEG91594.1| hypothetical protein COPCOM_00150 [Coprococcus comes ATCC 27758] gi|295108685|emb|CBL22638.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 209 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 RGETNEYETDIT 81 >gi|205371967|ref|ZP_03224785.1| Xre family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 69 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESP 69 G+RIR R + G +QE + LG++ + + E+G NR+ ++ L H ++EVL P Sbjct: 7 GRRIRAYRKLKGFTQEDFAKELGVSVSVLGEVERG-NRMPSAELIHKVTEVLNIP 60 >gi|160936303|ref|ZP_02083673.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] gi|158440772|gb|EDP18503.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R G++Q +L +G + + VQKYE G V + I++ L++ +F Sbjct: 9 IGQRIKTLRKRKGLNQTQLANLIGKSLRTVQKYETGEIEVSIDVVNEIAKHLDTTPTF 66 >gi|83593475|ref|YP_427227.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576389|gb|ABC22940.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 196 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRI R GMSQ L + LG+ + YE+G N ++ ++ +L +F Sbjct: 2 IEIGKRIAEARKDQGMSQYALAKLLGVNQSTIAYYERGRNTPKPWIVEDLARILNVSAAF 61 Query: 73 FF 74 Sbjct: 62 LL 63 >gi|218515232|ref|ZP_03512072.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 238 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 45 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 104 Query: 69 PISFFF 74 P++ FF Sbjct: 105 PLTAFF 110 >gi|254441108|ref|ZP_05054601.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] gi|198251186|gb|EDY75501.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] Length = 427 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G R+R RR+ LG+ Q + + GI+ + E R+G L+ ++ VLE ++ Sbjct: 5 IITGTRVRNRRIDLGLRQVNVAKATGISGSYLNLIEHNRRRIGGKLLRDLARVLEIDVAL 64 Query: 73 FFD 75 D Sbjct: 65 LGD 67 >gi|323487870|ref|ZP_08093128.1| immunity repressor protein [Planococcus donghaensis MPA1U2] gi|323398604|gb|EGA91392.1| immunity repressor protein [Planococcus donghaensis MPA1U2] Length = 114 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 18/117 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KR++L R M+QE+L LG T + YE G + L +I+ +L S + Sbjct: 2 LSKRLKLVRQKRKMTQEELARTLGTTKGSISNYENGRSSPSVEVLVNIANILNSSTDYL- 60 Query: 75 DVSPTVCSDISSEENNVMDFI--STPDGLQLNRYFIQI-----DDVKVRQKIIELVR 124 + T+ S DF+ D + N +FI++ +D++ + IE +R Sbjct: 61 -LGRTLESS---------DFLREKLKDAQENNTHFIEVSGLNQEDIEFLKNQIEFLR 107 >gi|317501285|ref|ZP_07959488.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|316897249|gb|EFV19317.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] Length = 209 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G ++ L+ +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDIS 85 + +DI+ Sbjct: 70 KGETDEYETDIT 81 >gi|302672043|ref|YP_003832003.1| AbrB family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396516|gb|ADL35421.1| transcriptional regulator AbrB family [Butyrivibrio proteoclasticus B316] Length = 139 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R +L M+QE + E LG+T Q V K+E G + + + ++++ F VS + Sbjct: 10 RKVLRMTQEDVAEKLGVTRQSVAKWESGESIPDLDKCKQLADI--------FGVSLDDLA 61 Query: 83 DISSEENNVMDFISTPDGLQL 103 + EEN M F P G L Sbjct: 62 NYEPEEN--MGFAVPPKGKHL 80 >gi|298372022|ref|ZP_06982012.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274926|gb|EFI16477.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] Length = 281 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Query: 57 SRLQHISEVL---ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 SRLQ+ + L + FF +SPT SDI E N DF + DG+ ++Y I+ Sbjct: 26 SRLQNRKDTLCVDSGRGAIFFKLSPTELSDIKKEYKNEEDFYADADGIAEDKYRIK 81 >gi|160898595|ref|YP_001564177.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364179|gb|ABX35792.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 102 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 D G R++ R+ +SQ+ LG GI ++ +YE G ++ ++ ++EVL Sbjct: 4 ADEQWGARLKQARLAADLSQKMLGIEAGIDPFVASARINRYELGKHKPDLLTVRKLAEVL 63 Query: 67 ESPISFFF 74 + P++FF+ Sbjct: 64 KVPMAFFY 71 >gi|295106127|emb|CBL03670.1| looped-hinge helix DNA binding domain, AbrB family [Gordonibacter pamelaeae 7-10-1-b] Length = 140 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RR +G++QE+L L + Q V K+E G + + ++E L+ + Sbjct: 2 IGSNIQSRRRAIGLTQEQLAAALAVARQTVAKWEAGDSVPDLANAGALAEALDVSLDALV 61 Query: 75 DVSP 78 P Sbjct: 62 GYDP 65 >gi|295101168|emb|CBK98713.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 210 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 G+SQ +L LG+T Q V K+E G + + + I+E+L + F + V + + Sbjct: 15 GISQAELASKLGVTQQAVGKWESGKSSPDPATVARIAEILSTTADFLLGLYRPVSNVTTP 74 Query: 87 EE 88 EE Sbjct: 75 EE 76 >gi|295835925|ref|ZP_06822858.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] gi|197698390|gb|EDY45323.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] Length = 509 Score = 35.0 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G SQ +L E L + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|188026565|ref|ZP_02962597.2| hypothetical protein PROSTU_04732 [Providencia stuartii ATCC 25827] gi|188019447|gb|EDU57487.1| hypothetical protein PROSTU_04732 [Providencia stuartii ATCC 25827] Length = 119 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 G IR +R+ LG++ LG L ++ QQ+ +YE+G+ + +L+ L S SF Sbjct: 35 TGLFIRQKRIELGLNGSDLGRLLNVSQQQISRYERGITSLTLHQLEQFLRALAVSWESFI 94 Query: 74 FDVSPTVC 81 +V +C Sbjct: 95 REVIHPLC 102 >gi|163755625|ref|ZP_02162744.1| helix-turn-helix family protein [Kordia algicida OT-1] gi|161324538|gb|EDP95868.1| helix-turn-helix family protein [Kordia algicida OT-1] Length = 66 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI++ R IL ++Q++L + +G++ Q + EKG +S + + PI+ FF + Sbjct: 4 RIKIERAILDITQDELAKKIGVSRQTINSIEKGRYVPSTVLALKLSNLFDKPINEFFFLE 63 Query: 78 PT 79 T Sbjct: 64 ET 65 >gi|15894837|ref|NP_348186.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024511|gb|AAK79526.1|AE007666_1 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508975|gb|ADZ20611.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 118 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++++ R + Q + + +G TFQ++ +E G RV L + E+ + Sbjct: 6 IGRKLKAARENANLKQSDVAKIIGSTFQKISSFETGRTRVDLETLIRLCEIYNVDADYIL 65 Query: 75 DVSPTVCSDIS---SEENNVMDFISTPDGLQ 102 ++++ E N ++ F PD ++ Sbjct: 66 STDKKNSNNLTLKPEESNLIVKFRQLPDSVK 96 >gi|291526787|emb|CBK92373.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 115 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RI RR ++G+SQ++L +GI Q + E G + L +++ VL + Sbjct: 11 DYERGLRIADRRKVMGLSQDELAHRVGIGRQALSAIENGGD-FKTQTLDNLAIVLGVSVD 69 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F S++ SE MD +S D LQ+ + I +K Sbjct: 70 FIMYGKNEENSELLSE---AMDVLSDMDELQVRQCLAMIKAMK 109 >gi|197284839|ref|YP_002150711.1| phage protein [Proteus mirabilis HI4320] gi|194682326|emb|CAR42121.1| phage protein [Proteus mirabilis HI4320] Length = 86 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPI 70 V KR++ R + ++QE+LG GI + +V +YE G +R + S++L+ P Sbjct: 2 VPKRLKAARARVALTQEELGILAGIDEESAKIRVCQYESGTHRPNFETICRFSKILKVPE 61 Query: 71 SFFFDVSPTVCSDISSEENN 90 ++F+ ++ ++ + NN Sbjct: 62 NYFYTLNDEFAEELINIYNN 81 >gi|170780657|ref|YP_001708989.1| putative DNA-binding membrane protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155225|emb|CAQ00326.1| putative DNA-binding membrane protein [Clavibacter michiganensis subsp. sepedonicus] Length = 173 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 G +Q++L E GIT + VQ+ E G N L +++ LE P+ F V Sbjct: 14 GWTQDRLAEASGITVRTVQRLEAG-NDASLETLSLVAKALEVPVRDLFAV 62 >gi|322378129|ref|ZP_08052615.1| DNA-binding protein [Streptococcus sp. M334] gi|321280966|gb|EFX57980.1| DNA-binding protein [Streptococcus sp. M334] Length = 307 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + I VGKRIR+ R + +++E L + IT +Q+ + E G + S++++I+ L P Sbjct: 3 IKIEVGKRIRMLREMKHITRETLCDDETEITVRQLARIESGQSSPSLSKVEYIAYKLGCP 62 Query: 70 ISFFFDVSPTV 80 IS D+ + Sbjct: 63 ISHIVDMDHMI 73 >gi|315300972|ref|ZP_07872315.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] gi|313630659|gb|EFR98449.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] Length = 111 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 13/87 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G++QE L E L T Q + +YE G + L ++++ + FF Sbjct: 7 VGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFF 66 Query: 75 -------------DVSPTVCSDISSEE 88 V+ + D++ EE Sbjct: 67 PERNLPPVDERGMTVAAHIDDDVTDEE 93 >gi|212709629|ref|ZP_03317757.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] gi|212687733|gb|EEB47261.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] Length = 236 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS 85 LG+SQE LG+ +G+ V + GVN + ++E LE + D SP + +I Sbjct: 28 LGLSQESLGDAIGMGQSAVAQLLNGVNAINVENAVKLAEALEVSVD---DFSPLLAKEIR 84 Query: 86 SEENNV 91 N+V Sbjct: 85 RMFNSV 90 >gi|332638348|ref|ZP_08417211.1| XRE family transcriptional regulator [Weissella cibaria KACC 11862] Length = 180 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 23/36 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 +G I+ RR GMSQ+ L + LGI+ Q + K+E G Sbjct: 3 IGHNIQQRREDKGMSQQDLADYLGISRQSISKWENG 38 >gi|307243365|ref|ZP_07525525.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] gi|306493257|gb|EFM65250.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] Length = 104 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+L R M+Q L L +T + KYE G+ L+ +S++ E + + Sbjct: 4 LGNRIKLLRKEFNMTQTDLANRLNLTKSNISKYENGIVEPSLDILRSMSDLFEVSVDYLL 63 >gi|218705070|ref|YP_002412589.1| transcriptional repressor DicA [Escherichia coli UMN026] gi|291283201|ref|YP_003500019.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300895972|ref|ZP_07114540.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|301326444|ref|ZP_07219796.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|218432167|emb|CAR13055.1| putative repressor protein of division inhibition from phage origin [Escherichia coli UMN026] gi|290763074|gb|ADD57035.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300360122|gb|EFJ75992.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|300846860|gb|EFK74620.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|320652127|gb|EFX20458.1| transcriptional repressor DicA [Escherichia coli O157:H- str. H 2687] gi|320657721|gb|EFX25510.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 152 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ SP Sbjct: 23 LGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 82 Query: 74 F---DVSPT 79 F D +P Sbjct: 83 FGDEDKTPA 91 >gi|150390375|ref|YP_001320424.1| helix-turn-helix domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950237|gb|ABR48765.1| helix-turn-helix domain protein [Alkaliphilus metalliredigens QYMF] Length = 120 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR R LGM+QE+LG + T V KYE G L +S++ + I + Sbjct: 2 RIRELRQELGMTQEELGRKINQTKSNVSKYETGTLEPNIQTLNLLSDIFDVSIDYL 57 >gi|322516931|ref|ZP_08069826.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124508|gb|EFX95995.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 108 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRIR+ R+ GM+QE L E + V K E + L+ I + L+ I FF Sbjct: 8 ISKRIRVLRIKEGMTQEMLEEKAELGTNYVYKIENLEPNIKIKTLEKIMKALDVDIPTFF 67 Query: 75 DVS 77 DV+ Sbjct: 68 DVT 70 >gi|311895027|dbj|BAJ27435.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 375 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%) Query: 15 VGKRIRLRRMILGMSQE-------KLGECLGITFQQVQKYEKGVN--RVGASRLQHISEV 65 VG I R LGMSQ+ KLG C +T Q + ++E G + G L H++ Sbjct: 5 VGSLIEELRRGLGMSQDQLAARLNKLGNCTTMTRQLISRWENGYQGRKPGPRWLPHLATA 64 Query: 66 LESPI 70 LE P+ Sbjct: 65 LEVPL 69 >gi|259415826|ref|ZP_05739746.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259347265|gb|EEW59042.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 443 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 G RIR RR++LG+ Q L GI+ + E R+G L +++VL Sbjct: 8 GSRIRERRLMLGLRQADLARDAGISASYLNLIEHNRRRIGGKLLVTLAQVL 58 >gi|237744347|ref|ZP_04574828.1| predicted protein [Fusobacterium sp. 7_1] gi|229431576|gb|EEO41788.1| predicted protein [Fusobacterium sp. 7_1] Length = 189 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I+ R ++Q+++ + LG++ +QKYE G ++ I E ++ F Sbjct: 3 ISEKIKELRKNNNLTQKEMAKKLGVSLSSLQKYEYGDFYPSIEVIRKIVEFFNITLNDFL 62 Query: 75 DVSPTVCSDISSEENNVMDF 94 DV SDIS+EE V+++ Sbjct: 63 DV-----SDISNEEKEVINW 77 >gi|218694781|ref|YP_002402448.1| transcriptional repressor DicA [Escherichia coli 55989] gi|309793330|ref|ZP_07687757.1| transcriptional repressor DicA [Escherichia coli MS 145-7] gi|218351513|emb|CAU97222.1| putative repressor protein of division inhibition from phage origin [Escherichia coli 55989] gi|308122917|gb|EFO60179.1| transcriptional repressor DicA [Escherichia coli MS 145-7] Length = 152 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ SP Sbjct: 23 LGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 82 Query: 74 F---DVSPT 79 F D +P Sbjct: 83 FGDEDKTPA 91 >gi|226949161|ref|YP_002804252.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226842961|gb|ACO85627.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 218 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++Q++L E LGI Q + ++ KG ++ L ++SE + P+ +F Sbjct: 10 LYNLTQQELAEELGIRKQNISQWVKGSRKIPKKYLTYLSEKFKIPVPYF 58 >gi|223986398|ref|ZP_03636404.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] gi|223961640|gb|EEF66146.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] Length = 358 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I L R G +Q +L E LGIT + V K+E G + + L +SE L +S Sbjct: 4 MKIGGFIALCRKEKGWTQSQLAEILGITDKAVSKWETGKSLPDYALLTPLSEALGITLSE 63 Query: 73 FFDVSPTVCSDISSEENNVM 92 F D+ + + V+ Sbjct: 64 LFSGERIRAEDLMEKTDQVL 83 >gi|313635253|gb|EFS01552.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL N1-067] gi|313639938|gb|EFS04624.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL S4-171] Length = 111 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G++QE L E L T Q + +YE G + L ++++ + FF Sbjct: 7 VGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFF 66 >gi|258611915|ref|ZP_05243102.2| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290892307|ref|ZP_06555302.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293596363|ref|ZP_05230968.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|293597004|ref|ZP_05266446.2| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300764870|ref|ZP_07074859.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] gi|258607134|gb|EEW19742.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290558133|gb|EFD91652.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293584645|gb|EFF96677.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293595206|gb|EFG02967.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300514357|gb|EFK41415.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] Length = 117 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G++QE L E L T Q + +YE G + L ++++ + FF Sbjct: 13 VGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFF 72 >gi|312887654|ref|ZP_07747246.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299869|gb|EFQ76946.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 124 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P + KR ++ R ++Q ++ + LG+T VQK+E G + +Q + + L Sbjct: 1 MPKRPVTDYAKRFKIFRKYKDLTQIQIADVLGVTQPAVQKWESGATDLSIEIIQKLRDKL 60 Query: 67 ESPISFFF 74 + +FF Sbjct: 61 NMSLEWFF 68 >gi|251782740|ref|YP_002997043.1| putative transcriptional regulator PlcR [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391370|dbj|BAH81829.1| putative transcriptional regulator PlcR [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 290 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ +L+R LG+SQ+ L + GI Q Q+ K E+G A L +S+ LE + +F Sbjct: 5 LSEKFKLKRKELGISQQSLAD--GICEQSQISKIERGNFIPSADLLYKLSQRLEVTLDYF 62 Query: 74 FDVSPTVCSDISSEEN 89 F+ V S +S+ +N Sbjct: 63 FNDEIEVKSSLSNFKN 78 >gi|307154678|ref|YP_003890062.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984906|gb|ADN16787.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 83 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +GK IR R+ LGM+QE+ LG+ + V ++E G + L+ I ++L Sbjct: 14 IGKLIRSIRLELGMTQEQFAAYLGVVYPTVNRWENGHTQPSLMALRLIEKLL 65 >gi|257451797|ref|ZP_05617096.1| SOS-response transcriptional repressors [Fusobacterium sp. 3_1_5R] gi|317058353|ref|ZP_07922838.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] gi|313684029|gb|EFS20864.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] Length = 208 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R ++QE+ + G+T + KYE G + L +I+ + PIS+F Sbjct: 9 TIGDKILKLRKETALTQEQFSKIAGVTPLSILKYESGERLISIETLLNIANYFKIPISYF 68 Query: 74 F 74 Sbjct: 69 L 69 >gi|254498006|ref|ZP_05110769.1| phage repressor [Legionella drancourtii LLAP12] gi|254352783|gb|EET11555.1| phage repressor [Legionella drancourtii LLAP12] Length = 227 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R I G++++ L E + ++ YE+G G ++ +++VLE +F Sbjct: 7 IGQRIKHERTIKGLTRKALAELTDSLKISRINNYERGERTPGPEEIKQLAKVLEVSPAFL 66 Query: 74 FDVS 77 +S Sbjct: 67 MCLS 70 >gi|240140512|ref|YP_002964992.1| hypothetical protein MexAM1_META1p4053 [Methylobacterium extorquens AM1] gi|240010489|gb|ACS41715.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 87 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R+ G+SQE+L GI V + E+G V S L+ ++ L P++ Sbjct: 7 IGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPVAHLL 66 >gi|293401719|ref|ZP_06645861.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304977|gb|EFE46224.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 139 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 GMSQ+ L + L +T Q + K+E+G++ A L +SE+ E +S + S Sbjct: 14 GMSQQFLADQLHVTRQTISKWERGLSVPDADMLIALSEMFEVSVSTLLNRS 64 >gi|160937325|ref|ZP_02084687.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] gi|158439889|gb|EDP17638.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] Length = 88 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D + G I+ R + GM Q++L + +GI Q + K E+GV L+ I VLE Sbjct: 3 DKHFGPNIQTFRKLKGMKQQELADAIGINLQSLSKIERGVYYPTFETLEKIMVVLE 58 >gi|16760810|ref|NP_456427.1| regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25512966|pir||AG0738 probable regulator STY2066 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503107|emb|CAD05610.1| putative regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|323977012|gb|EGB72099.1| helix-turn-helix protein [Escherichia coli TW10509] gi|324012832|gb|EGB82051.1| helix-turn-helix protein [Escherichia coli MS 60-1] Length = 139 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 + R++ RR LG+SQ KL E G T ++ YE G VG + + L SP Sbjct: 17 IAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 F + ++ + +++ + G + R I++ +V++++ Sbjct: 77 FGEQESSELWLNESQRKLLELFNQLPGSEQQR-MIELFEVRLKE 119 >gi|309804464|ref|ZP_07698531.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|309809826|ref|ZP_07703678.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|312873153|ref|ZP_07733212.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|312873404|ref|ZP_07733455.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|325911527|ref|ZP_08173936.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|308166217|gb|EFO68433.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|308169868|gb|EFO71909.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|311091088|gb|EFQ49481.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311091386|gb|EFQ49771.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325476657|gb|EGC79814.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 210 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLL 62 Query: 75 D 75 D Sbjct: 63 D 63 >gi|262037710|ref|ZP_06011152.1| transcription regulator [Leptotrichia goodfellowii F0264] gi|261748182|gb|EEY35579.1| transcription regulator [Leptotrichia goodfellowii F0264] Length = 293 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++++ R MSQEKL E LG++ Q V K+E G+ ++ ISE+ E I Sbjct: 1 MTFAEKLKSFRKQAKMSQEKLSEKLGVSRQAVTKWETGLGIPEIENIRAISELFEISI 58 >gi|257440445|ref|ZP_05616200.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197067|gb|EEU95351.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 210 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I R + G SQ++L + LG + +QK+E+G R+ + + L P+ + Sbjct: 8 IGEAIAFARNVAGRSQQELADMLGRDKRTIQKWERGEIRIALEDFLDVFDTLHLPVGPY 66 >gi|259501148|ref|ZP_05744050.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|302190406|ref|ZP_07266660.1| DNA-binding protein [Lactobacillus iners AB-1] gi|309804359|ref|ZP_07698435.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|312871026|ref|ZP_07731129.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325913257|ref|ZP_08175625.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|259167842|gb|EEW52337.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|308163571|gb|EFO65842.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|311093521|gb|EFQ51862.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477360|gb|EGC80504.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 210 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDYLL 62 Query: 75 D 75 D Sbjct: 63 D 63 >gi|315231132|ref|YP_004071568.1| hypothetical protein TERMP_01370 [Thermococcus barophilus MP] gi|315184160|gb|ADT84345.1| hypothetical protein TERMP_01370 [Thermococcus barophilus MP] Length = 243 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVL 66 GK +R R I G+SQ +L E LG++ + YE G + GAS ++ E L Sbjct: 24 GKTMRKWREIFGISQTELAEYLGVSSSVISDYEGGRRKSPGASTIRKFVEAL 75 >gi|319935094|ref|ZP_08009535.1| hypothetical protein HMPREF9488_00366 [Coprobacillus sp. 29_1] gi|319809989|gb|EFW06366.1| hypothetical protein HMPREF9488_00366 [Coprobacillus sp. 29_1] Length = 240 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK++ R G+SQE+L L ++ Q + K+E ++ + IS+ Sbjct: 1 MSIGKKLLYLRQQRGLSQEELASALHVSRQTISKWESDLSLPDMKMMLSISQ-------- 52 Query: 73 FFDVSPTVCSDISSEENN 90 F+DVS T + +EN+ Sbjct: 53 FYDVSVTELLGVDEKENS 70 >gi|289166201|ref|YP_003456339.1| phage repressor [Legionella longbeachae NSW150] gi|288859374|emb|CBJ13310.1| putative phage repressor [Legionella longbeachae NSW150] Length = 229 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI + R G++++ L E G + ++ YE+G G + ++ +++VLE S+ Sbjct: 9 IGQRIMIERKAKGLTRKALAELTGELKISRINNYERGDRTPGPTEIKLLADVLEVSASYL 68 Query: 74 F 74 Sbjct: 69 M 69 >gi|237751081|ref|ZP_04581561.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229373526|gb|EEO23917.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 222 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +++R R+ LG+SQ+K E LG+T + YE N + + L +SE+ Sbjct: 9 EKLRNLRLSLGLSQKKFAEKLGLTRSLIAAYETEKNPISNNVLLRVSEIF 58 >gi|332971256|gb|EGK10219.1| transcriptional regulator with an addtional conserved domain protein [Desmospora sp. 8437] Length = 386 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R+R R G++ ++L E +G++ Q + KYE G Q + L PI FF+ Sbjct: 11 IPERLREGREARGLTIQELSERVGVSHQSISKYENGKAVPSGMVFQKLLFTLNLPIHFFY 70 >gi|238897791|ref|YP_002923470.1| phage repressor protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465548|gb|ACQ67322.1| phage repressor protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 206 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 N I+ GK+++ R+ GM+Q + LGI ++ YE G+ VG Sbjct: 2 NTFSIDHGKKLKAVRLNEGMTQIEFAHVLGIGLGTIKNYESGIRGVG 48 >gi|294101955|ref|YP_003553813.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616935|gb|ADE57089.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 235 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR+ R+ G++Q +L E LG++F + ++EK L +++VLE+ +++ Sbjct: 4 GKRLSELRVKRGLTQLELAEKLGVSFHTILRWEKERRFPDVFHLSILADVLETSVAYL 61 >gi|317495916|ref|ZP_07954279.1| hypothetical protein HMPREF0432_00882 [Gemella moribillum M424] gi|316914093|gb|EFV35576.1| hypothetical protein HMPREF0432_00882 [Gemella moribillum M424] Length = 214 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Query: 1 MVGNKKIPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M+ +++ ++IN VG RI+ R+ G + E G+ G++ V K+E+G + Sbjct: 1 MMKKEELHMKININKNAVGSRIKQIRLNKGYTLEAFGKLFGVSKSNVLKWEQGQSLPNKE 60 Query: 58 RLQHISEVLESPIS 71 RL IS++ + ++ Sbjct: 61 RLASISKIADMSVN 74 >gi|331647421|ref|ZP_08348513.1| putative regulator [Escherichia coli M605] gi|331043145|gb|EGI15283.1| putative regulator [Escherichia coli M605] Length = 139 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 4 NKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N+KI + ++ + R++ RR LG+SQ KL E G T ++ YE G VG + Sbjct: 5 NEKIAASRLNDKIAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVL 64 Query: 63 SEVLE-SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + L SP F + ++ + +++ + G + R I++ +V++++ Sbjct: 65 GKALGISPPELLFGEQESSELWLNESQRKLLELFNQLPGSEQQR-MIELFEVRLKE 119 >gi|167755461|ref|ZP_02427588.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] gi|167704400|gb|EDS18979.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] Length = 426 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 9 NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 N +++N VG+ I L+R G++Q++L L ++FQ V K+E G Sbjct: 11 NMINVNKVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENG 53 >gi|193071379|ref|ZP_03052295.1| putative repressor protein [Escherichia coli E110019] gi|192955295|gb|EDV85782.1| putative repressor protein [Escherichia coli E110019] Length = 219 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 ++G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 8 SLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYL 67 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + VS S + S + ++S Sbjct: 68 LYGVSSPELSFVQSTSGTKIPYLS 91 >gi|332527737|ref|ZP_08403778.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332112135|gb|EGJ12111.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 189 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 VG+ +R R G+SQ L E G++ + + E+G + SRL ++E L Sbjct: 18 VGQNLRAARQNAGLSQAALAEASGLSRRMIVALEQGDTNISLSRLDRLAEAL 69 >gi|329298588|ref|ZP_08255924.1| LexA repressor [Plautia stali symbiont] Length = 211 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L ++Q+ L +G++ V ++EK L ++E+L+ ++ D Sbjct: 8 GERIRQRRKALKLTQQALANGIGVSHVAVSQWEKEETVPRGKHLLRLAELLQCSAAWIID 67 >gi|313667428|ref|YP_004047712.1| hypothetical protein NLA_0720 [Neisseria lactamica ST-640] gi|313004890|emb|CBN86316.1| hypothetical protein NLA_0720 [Neisseria lactamica 020-06] Length = 136 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++IRL R + SQE + E L ++ K E+G ++ RL+ I+ + + Sbjct: 1 MKTHEKIRLMRELKQWSQETVAEKLNLSTNGYAKIERGETKLNLPRLEQIATIFHVDLMD 60 Query: 73 FFDVSPT--VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +C I+ +NN + F +P N F +I+ +K+ Sbjct: 61 LLQPGDNGFICQ-INEGDNNNISFYDSPS----NELFAEIEKLKL 100 >gi|320009363|gb|ADW04213.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 280 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 1 MVGNKKI---PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M G KK+ +P + +G +R RR G+SQE LG L ++ + + E G R+ A Sbjct: 1 MPGPKKLDPSASPRAL-LGAELRHRRETAGLSQEDLGAPLFVSGSFIGQLEAGTRRMQAD 59 Query: 58 RLQHISEVL 66 + + EVL Sbjct: 60 QAARLDEVL 68 >gi|261208879|ref|ZP_05923316.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289566920|ref|ZP_06447326.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294616443|ref|ZP_06696230.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|260077381|gb|EEW65101.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289161287|gb|EFD09181.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291590694|gb|EFF22416.1| transcriptional regulator, xre family [Enterococcus faecium E1636] Length = 221 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|88854989|ref|ZP_01129654.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] gi|88815517|gb|EAR25374.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] Length = 489 Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RIR R G++ + LG L QV E G + S LQ ++ + + + Sbjct: 18 LTVGRRIRQLRTDRGLTLDDLGAALNRAASQVSVIENGKRELKLSELQKLARIFDVSVDD 77 Query: 73 FFDVSP 78 + P Sbjct: 78 LLNAEP 83 >gi|260843067|ref|YP_003220845.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|260866991|ref|YP_003233393.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257758214|dbj|BAI29711.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257763347|dbj|BAI34842.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|323967329|gb|EGB62751.1| helix-turn-helix protein [Escherichia coli M863] Length = 94 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G++QEKLG G+ ++ +YEKG + + ++++VL P+SF Sbjct: 5 RLKEARRRAGLTQEKLGILAGLDEASASTRINQYEKGKHSPNFETVSNLAKVLNVPVSFL 64 Query: 74 F 74 + Sbjct: 65 Y 65 >gi|29347770|ref|NP_811273.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29339671|gb|AAO77467.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 136 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 ++G++I R + GM+Q LGE LG+T Q + K E+ ++ +L+ ++ L Sbjct: 11 HLGRKIERIRRLRGMTQTDLGELLGVTKQAISKMEQ-AEKIDDEKLKQVATAL 62 >gi|228949440|ref|ZP_04111697.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810236|gb|EEM56600.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 138 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK I+ R I G+S++++ E L T++ V +E G ++L+ I+ L +S Sbjct: 19 VGKNIKKLRAIKGVSRKEMAEDLNTTYRTVSSWETGEKTPRLNKLEEIATYLNVSVSSLL 78 >gi|228968306|ref|ZP_04129303.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791383|gb|EEM38988.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +++GK I+ R +SQ++LGE G++ + V +EKG+ +Q I++ Sbjct: 1 MSIGKNIKKLRSKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGAIQKIAD 52 >gi|187776409|ref|ZP_02802465.2| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188025234|ref|ZP_02776939.2| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|189010761|ref|ZP_02809209.2| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189402468|ref|ZP_02782667.2| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189403410|ref|ZP_02795288.2| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189404368|ref|ZP_02788860.2| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189406229|ref|ZP_02827125.2| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208810492|ref|ZP_03252368.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208816709|ref|ZP_03257829.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208819596|ref|ZP_03259916.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209400359|ref|YP_002271137.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217329536|ref|ZP_03445615.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] gi|187767281|gb|EDU31125.1| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188014100|gb|EDU52222.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188998604|gb|EDU67590.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355391|gb|EDU73810.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189360762|gb|EDU79181.1| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189366046|gb|EDU84462.1| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189375816|gb|EDU94232.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208725008|gb|EDZ74715.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208731052|gb|EDZ79741.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208739719|gb|EDZ87401.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209161759|gb|ACI39192.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217317304|gb|EEC25733.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] Length = 219 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 ++G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 8 SLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYL 67 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + VS S + S + ++S Sbjct: 68 LYGVSSPELSFVQSTSGTKIPYLS 91 >gi|110680047|ref|YP_683054.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109456163|gb|ABG32368.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 429 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 25/52 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 G RIR RR + G+ Q L LGI+ + E R+G L I+ VL Sbjct: 7 TGSRIRERRSVAGLKQADLARALGISPSYLNLIEHNRRRIGGKLLLDIARVL 58 >gi|226313439|ref|YP_002773333.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226096387|dbj|BAH44829.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 185 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G +IR+ R G + E + G++ + + E+G+++ L I++ LESP Sbjct: 4 PIE-TIGHKIRMIRKERGFTLEIMAGKTGLSKGLLSQVERGISQPSLDSLWKITKALESP 62 Query: 70 ISFFFD 75 I FF+ Sbjct: 63 IIHFFE 68 >gi|163847710|ref|YP_001635754.1| cupin 2 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525574|ref|YP_002570045.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668999|gb|ABY35365.1| Cupin 2 conserved barrel domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449453|gb|ACM53719.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 211 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++VG RIR R +S L E G+ + E G S LQ ++ L+ P+S Sbjct: 16 NVDVGTRIRTLREQRRLSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPVS 75 Query: 72 FFF 74 FF Sbjct: 76 TFF 78 >gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 513 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G IR R G++Q +L + LG + V + E+G + L +SE L+S Sbjct: 15 IGTLIRDARKHRGLTQTQLADLLGTSQSAVNRIERGAQNLSVDMLNRVSEALDS 68 >gi|315127131|ref|YP_004069134.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315015645|gb|ADT68983.1| putative transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 99 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G++Q++LG LG+ ++ +YEKG + ++ I++ L+ P+++F Sbjct: 8 RLKSARKAAGLTQQQLGMALGMEPNTASARMNQYEKGKHAPDFLTMKRIAKELDVPVAYF 67 Query: 74 F 74 + Sbjct: 68 Y 68 >gi|332655084|ref|ZP_08420825.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515944|gb|EGJ45553.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 130 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 9/77 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVL 66 D ++G+R++ R ++Q++LG +G + + ++ +YEK A +EVL Sbjct: 6 TDTSIGQRLKFIRRFRRLTQKELGLRMGYSEKTADVRIAQYEKNARTPNAETTAKFAEVL 65 Query: 67 E-SPISFFFDVSPTVCS 82 + SP F SPT+C+ Sbjct: 66 KVSPAVF----SPTICA 78 >gi|260854614|ref|YP_003228505.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|257753263|dbj|BAI24765.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] Length = 215 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 ++G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 4 SLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYL 63 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + VS S + S + ++S Sbjct: 64 LYGVSSPELSFVQSTSGTKIPYLS 87 >gi|291326970|ref|ZP_06126519.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312079|gb|EFE52532.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 95 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG +IR R GMS + L LGI+ Q +YE G + + ++++ ++F Sbjct: 8 SVGLKIRSLRESHGMSGKDLSILLGISQQHQSRYENGEVNIHVDTIYQLAQIFNVSPTYF 67 Query: 74 FDVSPTVCSDISSEENNV 91 F + T DI+S E +V Sbjct: 68 FTETIT---DINSTELSV 82 >gi|237809770|ref|YP_002894210.1| helix-turn-helix domain-containing protein [Tolumonas auensis DSM 9187] gi|237502031|gb|ACQ94624.1| helix-turn-helix domain protein [Tolumonas auensis DSM 9187] Length = 355 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G+S + LG+ +G++ ++KYE N + + +++VL +FF Sbjct: 2 IGERLLRARAAAGLSMKALGDLVGVSANMIKKYEHNQNMPSSGVMIKLAKVLSVRSEYFF 61 >gi|169335943|ref|ZP_02863136.1| hypothetical protein ANASTE_02378 [Anaerofustis stercorihominis DSM 17244] gi|169258681|gb|EDS72647.1| hypothetical protein ANASTE_02378 [Anaerofustis stercorihominis DSM 17244] Length = 351 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV----LES 68 +N+ + I+ +R+ G++QE + LG++ V K+EKGV+ + L I+ + + + Sbjct: 1 MNINEIIKNKRVEAGLTQENVANYLGVSTPAVNKWEKGVSYPDITLLPPIARLFNIDMNT 60 Query: 69 PISFFFDVS 77 +SF D+S Sbjct: 61 LLSFNEDLS 69 >gi|117623603|ref|YP_852516.1| putative regulator [Escherichia coli APEC O1] gi|115512727|gb|ABJ00802.1| putative regulator [Escherichia coli APEC O1] Length = 139 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 + R++ RR LG+SQ KL E G T ++ YE G VG + + L SP Sbjct: 17 IAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 F + ++ + +++ + G + R I++ +V++++ Sbjct: 77 FGEKDSSELWLNESQRKLLELFNQLPGSEQQR-MIELFEVRLKE 119 >gi|15802455|ref|NP_288481.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 EDL933] gi|12516142|gb|AAG57035.1|AE005422_10 putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. EDL933] Length = 196 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 ++G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 4 SLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYL 63 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + VS S + S + ++S Sbjct: 64 LYGVSSPELSFVQSTSGTKIPYLS 87 >gi|251795604|ref|YP_003010335.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543230|gb|ACT00249.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 215 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +G+KK N+ K LR S + L E +G+T + +Q+YE+G +R+ RL+ Sbjct: 5 LGSKKFYAATGANIKKYRDLRNY----SLQVLAEKVGLTKKTIQRYEQGEHRIDTERLKA 60 Query: 62 ISEVLESPI 70 ++ L+ + Sbjct: 61 LAAALDVTV 69 >gi|256852139|ref|ZP_05557526.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260661292|ref|ZP_05862205.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282932144|ref|ZP_06337598.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297204982|ref|ZP_06922378.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] gi|256615551|gb|EEU20741.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260547747|gb|EEX23724.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281303737|gb|EFA95885.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297149560|gb|EFH29857.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] Length = 138 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R+ GMSQE+L L ++ Q V K+E G + +L+ +S++ + I + Sbjct: 4 INERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSQLYDVSIDY 61 >gi|323487601|ref|ZP_08092891.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] gi|157816226|gb|ABV82119.1| HTH domain protein [Streptococcus parasanguinis] gi|198387264|gb|ACH87089.1| helix-turn-helix XRE-family-like protein [Escherichia coli] gi|323399100|gb|EGA91508.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] Length = 151 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I Sbjct: 6 TDITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLK--------KI 57 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 F F V D + E M+ + Q N+Y + I Sbjct: 58 CFLFGVHM---DDFAKEVITKMETCEKKEKRQFNKYDMAI 94 >gi|116695851|ref|YP_841427.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha H16] gi|113530350|emb|CAJ96697.1| Transcriptional Regulator [Ralstonia eutropha H16] Length = 320 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 16/116 (13%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N NP + +G+R+R R G++++ + G++ + + E G LQH Sbjct: 25 AANGTDKNPFLVALGERVRELRACRGLTRKAAAQAAGVSERHLANLEYGSGNASILVLQH 84 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I++ L+ ++ DI++ S+P+ + L D+ +R+ Sbjct: 85 IADALQCSLAGLL-------GDITT---------SSPEWILLRELLEHRDEATLRR 124 >gi|297158608|gb|ADI08320.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 206 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 4/96 (4%) Query: 4 NKKIPNPV----DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 +K +P P + +VG+R+ R + MS L E ++ + + E+G + S L Sbjct: 11 SKSVPEPPAERPESDVGRRVHAFRRLRRMSLRALAERSDVSGSFLSQLERGRSSASISTL 70 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 I+ L ++ FD S + + +++ V+D++ Sbjct: 71 ARIASALGITMAELFDTSAIGPTPLRAQDRPVLDWV 106 >gi|240139351|ref|YP_002963826.1| hypothetical protein MexAM1_META1p2796 [Methylobacterium extorquens AM1] gi|240009323|gb|ACS40549.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 87 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R+ G+SQE+L GI V + E+G V S L+ ++ L P++ Sbjct: 7 IGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPVAHLL 66 >gi|149914665|ref|ZP_01903195.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b] gi|149811458|gb|EDM71293.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b] Length = 210 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ +R R GM+ L E G++ + K E GV + LQ +S L P+ Sbjct: 21 LETAIGREVREVRHARGMTVADLAEATGLSVGMLSKIENGVTSPSLTTLQALSSALSVPV 80 Query: 71 S 71 + Sbjct: 81 T 81 >gi|90414720|ref|ZP_01222690.1| putative transcriptional regulator [Photobacterium profundum 3TCK] gi|90324165|gb|EAS40743.1| putative transcriptional regulator [Photobacterium profundum 3TCK] Length = 102 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQ++LG LG+ ++ YEKG + + L+ I++ L P+S+F Sbjct: 10 RLKESRKTAGISQKELGIRLGMDPSSASGRMNHYEKGRHMPDIATLRRIADELGVPLSYF 69 Query: 74 F 74 F Sbjct: 70 F 70 >gi|15832020|ref|NP_310793.1| repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254793674|ref|YP_003078511.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] gi|13362234|dbj|BAB36189.1| putative repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254593074|gb|ACT72435.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] Length = 215 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 ++G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 4 SLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYL 63 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + VS S + S + ++S Sbjct: 64 LYGVSSPELSFVQSTSGTKIPYLS 87 >gi|186681969|ref|YP_001865165.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464421|gb|ACC80222.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 83 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 33/67 (49%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ +D +G ++ RR G SQE L E G+ + + E+G+ L HI++ L Sbjct: 3 PSKLDQILGLELQRRRTEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITKALG 62 Query: 68 SPISFFF 74 +S F Sbjct: 63 MTMSEFL 69 >gi|324328552|gb|ADY23812.1| putative DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 387 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++L R MS L L I+ Q V KYEK ++ + + VL P F+F+ Sbjct: 8 GERLKLARRFNAMSLLDLAGKLSISKQMVSKYEKNISPPSGEIMLQLEGVLGFPRKFYFE 67 >gi|289433492|ref|YP_003463364.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169736|emb|CBH26272.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 111 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G++QE L E L T Q + +YE G + L ++++ + FF Sbjct: 7 VGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDILFELAKIFNKRLDDFF 66 >gi|261820980|ref|YP_003259086.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604993|gb|ACX87479.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 104 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+RL R+ G+ Q +LG G+ +V +YE+ V+ + + VL+ P Sbjct: 11 IGKRLRLARVNTGLKQVELGCLAGLDEETASSRVSQYEREVSSPDFGLVCRFAAVLDVPE 70 Query: 71 SFFFDV 76 ++F+ V Sbjct: 71 AYFYAV 76 >gi|254450572|ref|ZP_05064009.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198264978|gb|EDY89248.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 427 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R R RR+ LG+ Q + + LGI+ + E R+G L ++ VL+ + Sbjct: 7 TGTRARNRRIDLGLRQTNVAKALGISGSYLNLIEHNRRRIGGKLLHDLARVLDMDAALLG 66 Query: 75 D 75 D Sbjct: 67 D 67 >gi|206562126|ref|YP_002232889.1| putative repressor protein [Burkholderia cenocepacia J2315] gi|198038166|emb|CAR54117.1| putative repressor protein [Burkholderia cenocepacia J2315] Length = 111 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R R+ G+SQE+LG GI +V +YE G + ++ VL P SF Sbjct: 13 KRLREARLRSGLSQEQLGIEAGIDEFSASARVNQYETGKHAPKLQTAHRLARVLHVPTSF 72 Query: 73 FFD 75 ++ Sbjct: 73 LYE 75 >gi|195939798|ref|ZP_03085180.1| putative repressor protein [Escherichia coli O157:H7 str. EC4024] gi|261226405|ref|ZP_05940686.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257983|ref|ZP_05950516.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK966] Length = 214 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 ++G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 3 SLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYL 62 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + VS S + S + ++S Sbjct: 63 LYGVSSPELSFVQSTSGTKIPYLS 86 >gi|324013609|gb|EGB82828.1| hypothetical protein HMPREF9533_02325 [Escherichia coli MS 60-1] Length = 125 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 10/107 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS----EVLES 68 +++G R++ R LG SQ + E +G +++ ++EK + GA L + +VL Sbjct: 11 MSLGSRLKEERNRLGFSQSEFAELVGASYKSQLRWEKDESAPGADALAIWATLGLDVLYV 70 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIS--TPDG----LQLNRYFIQ 109 DV V +S E+ +MD TP+ L++ R++ Q Sbjct: 71 VTGQRGDVMTNVVPKMSPEKQKLMDAFDEMTPEQRRSFLEVGRFYTQ 117 >gi|303242127|ref|ZP_07328617.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590314|gb|EFL60072.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 196 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 18/129 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RI+ R ++Q +L E LG+ Q + YE G L +++ F Sbjct: 11 MSQRIKQLREENKINQHQLAEILGVKNQTISNYEAGEREPSYGVLLKLADYFNVSTDFLL 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + SD+ + +++ + D LQ N Y+ K I+LV +K+ Sbjct: 71 GRTNISHSDLGQKTEYLLEHDAYSDTLQEIFNEYY----------KFIDLV------DKE 114 Query: 133 YRTIEEECM 141 Y +E C+ Sbjct: 115 YEKTQENCL 123 >gi|237733315|ref|ZP_04563796.1| predicted protein [Mollicutes bacterium D7] gi|229383696|gb|EEO33787.1| predicted protein [Coprobacillus sp. D7] Length = 138 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +++GKRI+ R G+SQE+L L I+ Q + K+E +N ++ +++ LE Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALE 55 >gi|323490301|ref|ZP_08095516.1| AnsR [Planococcus donghaensis MPA1U2] gi|323395971|gb|EGA88802.1| AnsR [Planococcus donghaensis MPA1U2] Length = 118 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRI+ R G+S E+L + +G V YE G +V L+ +++ E + Sbjct: 4 LSKRIKDLREAKGLSTEELADAIGFAKSTVWAYESGKKQVSVVHLERLADYFEISVDSLL 63 Query: 75 D 75 D Sbjct: 64 D 64 >gi|227485416|ref|ZP_03915732.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236546|gb|EEI86561.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 143 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 36/69 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ ISE L+ IS + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALIN 63 Query: 76 VSPTVCSDI 84 P +I Sbjct: 64 HEPNSIFEI 72 >gi|307137999|ref|ZP_07497355.1| putative regulator [Escherichia coli H736] gi|331641924|ref|ZP_08343059.1| putative regulator [Escherichia coli H736] gi|331038722|gb|EGI10942.1| putative regulator [Escherichia coli H736] Length = 140 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 + R++ RR LG+SQ KL E G T ++ YE G VG + + L SP Sbjct: 17 IAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 F + ++ + +++ + G + R I++ +V++++ Sbjct: 77 FGEKDSSELWLNESQRKLLELFNQLPGSEQQR-MIELFEVRLKE 119 >gi|288959791|ref|YP_003450131.1| transcriptional regulator [Azospirillum sp. B510] gi|288912099|dbj|BAI73587.1| transcriptional regulator [Azospirillum sp. B510] Length = 118 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR+R R +SQE + + + + V E+G L +S L+ P+ F Sbjct: 8 RIGKRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRLDVPLVDF 67 Query: 74 FDVSPTVCS 82 FD V S Sbjct: 68 FDDGEAVVS 76 >gi|268610635|ref|ZP_06144362.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 38/67 (56%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K++ N + G+ I+ R LGM+Q++L E + ++ + V K+E+G S L ++ Sbjct: 17 HKEVMNMDQVKTGQLIKRLRTELGMTQKQLAERINVSDKAVSKWERGNGCPDVSLLSALA 76 Query: 64 EVLESPI 70 +V + I Sbjct: 77 DVFGTDI 83 >gi|188588059|ref|YP_001921522.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498340|gb|ACD51476.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 114 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R++ R+ +SQ KL E I+ Q V YEKG+ + +S ++ +S FF Sbjct: 5 IMNRLKELRIEKDLSQAKLAELFNISQQAVSHYEKGIRDIDSSLIKTLSN--------FF 56 Query: 75 DVSPTVCSDISSEENNVMD 93 VS IS N D Sbjct: 57 SVSSDYLLGISDIRNYTDD 75 >gi|327398850|ref|YP_004339719.1| helix-turn-helix domain-containing protein [Hippea maritima DSM 10411] gi|327181479|gb|AEA33660.1| helix-turn-helix domain protein [Hippea maritima DSM 10411] Length = 191 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++G+R++ R G+SQ+++ E + +T + Q+YEK + +L I Sbjct: 4 SLGERLKAIRQAKGLSQKEMAEIMDVTLRAYQRYEKDEQKASYEKLARI 52 >gi|283769265|ref|ZP_06342169.1| peptidase S24-like domain protein [Bulleidia extructa W1219] gi|283104241|gb|EFC05620.1| peptidase S24-like domain protein [Bulleidia extructa W1219] Length = 275 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 23/36 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 VG+RIR RR+ L +S E LG +G + +YEKG Sbjct: 5 VGERIRKRRIELKLSPEDLGNKIGKDRATIYRYEKG 40 >gi|253689002|ref|YP_003018192.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755580|gb|ACT13656.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 137 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 26/50 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +G R+R R +G SQ + E LG T + KYE+G + L +SE Sbjct: 12 IGGRLREERETIGKSQSAIAEELGTTTRTWGKYERGETAPDGATLAFLSE 61 >gi|206975059|ref|ZP_03235973.1| HTH-type transcriptional regulator xre (Putative PbsX repressor) [Bacillus cereus H3081.97] gi|217959610|ref|YP_002338162.1| putative DNA-binding protein [Bacillus cereus AH187] gi|229138835|ref|ZP_04267416.1| transcriptional regulator [Bacillus cereus BDRD-ST26] gi|206746480|gb|EDZ57873.1| HTH-type transcriptional regulator xre (Putative PbsX repressor) [Bacillus cereus H3081.97] gi|217065315|gb|ACJ79565.1| putative DNA-binding protein [Bacillus cereus AH187] gi|228644751|gb|EEL01002.1| transcriptional regulator [Bacillus cereus BDRD-ST26] Length = 117 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 20 RLRRMI--LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV- 76 RL+ +I G+SQ++L + +G++ V Y +G + G LQ I++ L+ + V Sbjct: 6 RLKSLIDKKGISQQQLADAIGVSHVSVYNYVEGKKKPGIRTLQKIAKHLKVTTDYLLGVS 65 Query: 77 -SPTVCSD 83 SP + +D Sbjct: 66 DSPHLTAD 73 >gi|91780942|ref|YP_556149.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia xenovorans LB400] gi|91693602|gb|ABE36799.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia xenovorans LB400] Length = 323 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PV + +RIR R GM++++L G++ + + E G V S LQ +S L Sbjct: 21 DPVLSELARRIRTLRAQRGMTRKQLALQSGVSIPHLARIESGEGNVSVSLLQKLSVALNL 80 Query: 69 PISFFFDVSPTVCSDIS 85 PI + +D++ Sbjct: 81 PIQDLLADGSSQNADLT 97 >gi|71278291|ref|YP_271323.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144031|gb|AAZ24504.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] Length = 180 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGKR++ R + G+SQ +L + +G+T + E+ S L+ I E + ++ Sbjct: 1 MDVGKRLKEVREMYGLSQRELAKRVGLTNSTISMIERDAVSPSISSLKKILEGVSLTVTE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + S + +++ ++D S DG++L+ Sbjct: 61 FFTLEIPTESQVVFKKDTLVDVGS--DGVELH 90 >gi|313887742|ref|ZP_07821424.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846351|gb|EFR33730.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 185 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G++I+ +R L +SQE L + L +T Q + K+E + L+ +SEV +++ Sbjct: 3 IMYGEKIKSKRRELNLSQEDLADKLFVTRQAISKWENDKATPTMTNLRELSEVFGVDMAY 62 Query: 73 F 73 F Sbjct: 63 F 63 >gi|332292914|ref|YP_004431523.1| transcriptional regulator, XRE family [Krokinobacter diaphorus 4H-3-7-5] gi|332171000|gb|AEE20255.1| transcriptional regulator, XRE family [Krokinobacter diaphorus 4H-3-7-5] Length = 66 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ--HISEVLESPISFFFDV 76 +++ R IL ++Q+ L + +G++ Q + EK NR S + +SE+ E P++ FF + Sbjct: 5 LKVERAILNLTQDDLAKKIGVSRQTINSIEK--NRYVPSTVLALKLSELFEKPVNEFFSL 62 Query: 77 S 77 S Sbjct: 63 S 63 >gi|312865414|ref|ZP_07725641.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098932|gb|EFQ57149.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 193 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 37/61 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R+ G++QE + + L +T Q V ++E+ N LQ +S++ E +++ Sbjct: 1 MKIGERLRQARINAGLTQEDVSKELFVTRQTVSRWEQEKNLPNLYVLQDLSKLYEVEVAY 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|268592006|ref|ZP_06126227.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312398|gb|EFE52851.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 101 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N + +VG +R R M+ ++L E + I+ QQV +YE G + + +L I VL+ Sbjct: 3 ANIISSHVGNYLRKSRKEKNMTGKQLAELINISQQQVSRYETGSSSLSLDQLNEILTVLD 62 >gi|210632695|ref|ZP_03297520.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] gi|210159405|gb|EEA90376.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] Length = 320 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 M+QE+L LG+T Q V K+E G + RL + E+ E Sbjct: 24 MTQEQLAMLLGVTRQAVSKWESGASTPDMDRLVRLCEIFE 63 >gi|317500621|ref|ZP_07958840.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316897939|gb|EFV19991.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 151 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 11/96 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I Sbjct: 6 TDITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLK--------KI 57 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F F V D + E M+ + Q N+Y Sbjct: 58 CFLFGVHM---DDFAKEVITKMETCEKKEKRQFNKY 90 >gi|296284192|ref|ZP_06862190.1| hypothetical protein CbatJ_11236 [Citromicrobium bathyomarinum JL354] Length = 230 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 15/64 (23%), Positives = 36/64 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++++L R + ++QE L + G++ + ++K E G +R L+ I+ ++ ++ F Sbjct: 11 IAEQVKLIRKMFSLTQENLADAAGLSSRTIEKIESGRHRPEIQTLRSIARAVQFDVNVFA 70 Query: 75 DVSP 78 SP Sbjct: 71 KPSP 74 >gi|288962615|ref|YP_003452909.1| transcriptional regulator [Azospirillum sp. B510] gi|288914881|dbj|BAI76365.1| transcriptional regulator [Azospirillum sp. B510] Length = 118 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR+R R +SQE + + + + V E+G L +S L+ P+ F Sbjct: 8 RIGKRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRLDVPLVDF 67 Query: 74 FDVSPTVCS 82 FD V S Sbjct: 68 FDDGEAVVS 76 >gi|227552248|ref|ZP_03982297.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257895169|ref|ZP_05674822.1| helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|293377799|ref|ZP_06623987.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|227178619|gb|EEI59591.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257831734|gb|EEV58155.1| helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|292643580|gb|EFF61702.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 222 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|225572879|ref|ZP_03781634.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|317500124|ref|ZP_07958358.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087647|ref|ZP_08336575.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] gi|225039744|gb|EEG49990.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|316898479|gb|EFV20516.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|330399826|gb|EGG79486.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] Length = 211 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNFPTFDTLEKIMDVL 62 >gi|182676986|ref|YP_001831133.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636616|gb|ACB97389.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 151 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 15/81 (18%) Query: 10 PVDIN------------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 PV+IN +GK+I+ R+ G+SQ+ L G++ Q + E G Sbjct: 5 PVNINNLDDETLKSLAIIGKKIKDMRVAKGLSQKALSGKSGVSHQYILLIEIGTQNATIG 64 Query: 58 RLQHISEVLESPISFFFDVSP 78 L+ IS+ LE P F+ + P Sbjct: 65 ILKRISDALEVP---FYSILP 82 >gi|28379037|ref|NP_785929.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] gi|28271875|emb|CAD64780.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] Length = 188 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKG--VNRVGASRLQHISEVLESPISF 72 +I+ R +G+SQ +L E L +T Q + YEKG V R+ L+++ + PIS+ Sbjct: 3 KIKELRQYMGLSQAELAEKLNVTRQSISLYEKGQRVPRINV--LKNMEAIFGVPISY 57 >gi|116628615|ref|YP_821234.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116101892|gb|ABJ67038.1| Transcriptional regulator, xre family [Streptococcus thermophilus LMD-9] Length = 170 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEYLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|330503829|ref|YP_004380698.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918115|gb|AEB58946.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 83 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 36/70 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G+++R RR+ G++Q L GIT Q+V E+G VG + L++ + Sbjct: 6 ITLRLGEQLRQRRLNRGLTQAALASLAGITRQKVIAIERGDLSVGMIAYARVLAALDAEL 65 Query: 71 SFFFDVSPTV 80 + PT+ Sbjct: 66 NVVPAAMPTL 75 >gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 345 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 12/96 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVL 66 +N+G I+ R G +QE++ LG+T V K+E G + +RL HIS L Sbjct: 1 MNIGNVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSNPDIELLAPIARLLHIS--L 58 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ +SF +++ +++ E MD + + +G + Sbjct: 59 DTLLSFHENLTDVEITELIQE----MDKMFSAEGYE 90 >gi|225573231|ref|ZP_03781986.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] gi|225039363|gb|EEG49609.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] Length = 217 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 16/140 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI--------SEVL 66 +G+ I++ R M Q++L + +GI Q + K E+GVN L+ I +E+L Sbjct: 6 LGENIQIIRKHRKMKQQELADAIGINLQSLSKIERGVNYPTFETLEKIINVLGVTPNELL 65 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK--VRQKIIELVR 124 V + + EE DF + D L + YF ++ + ++ K+ E ++ Sbjct: 66 TGEWEQTSHVEQFIMEVVKREE----DFNVSLDSLPDHEYFQSQEEWQFYMKAKLSEYIQ 121 Query: 125 SIVSSEKKYRTIEEECMVEQ 144 + +S K ++EE C +++ Sbjct: 122 NYMSDTKT--SVEELCEIKK 139 >gi|91975357|ref|YP_568016.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681813|gb|ABE38115.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris BisB5] Length = 317 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R + GMS++ L + GI+ + + + E G V L+ +S+ L +P+ Sbjct: 25 LELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIILLRRVSDALATPLE- 83 Query: 73 FFDVSPTVCSDISSEENNVMDFI--STP 98 D+ P SD S + + D + +TP Sbjct: 84 --DLLPN--SDPSIDWPVIRDLVRRATP 107 >gi|291458792|ref|ZP_06598182.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418709|gb|EFE92428.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 163 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLE 67 + +G+RIR RM G++Q++LG LG + ++ +YE G + ++ I+EVL+ Sbjct: 11 MTIGERIRRVRMQRGLTQKELGIALGFPERSADVRIAQYESGTRKPKDDLIRQIAEVLQ 69 >gi|242239429|ref|YP_002987610.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242131486|gb|ACS85788.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 131 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R G++Q +L + L ++ Q VQ +E G R+ S L ++ L + Sbjct: 16 LGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRRIQISALPAVARQLSVSLDALL 75 Query: 75 DVSPT 79 S T Sbjct: 76 GDSHT 80 >gi|261345017|ref|ZP_05972661.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566698|gb|EFB72233.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 97 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 V +G ++ RR G++ +L L I+ QQ+ +YE+GVN + L I LE Sbjct: 12 VSTYIGTFLKRRRKGAGLTGAELASRLSISQQQISRYERGVNAITIQSLLGILHALE 68 >gi|154482431|ref|ZP_02024879.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] gi|149736708|gb|EDM52594.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] Length = 293 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 30/51 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 ++I+ R G+SQEK+ E +G++ Q + K+E G + L I+++ + Sbjct: 5 EQIKHYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIADLFQ 55 >gi|126700569|ref|YP_001089466.1| putative phage repressor [Clostridium difficile 630] gi|209901281|ref|YP_002290920.1| putative phage repressor [Clostridium phage phiCD27] gi|115252006|emb|CAJ69842.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|199612162|gb|ACH91335.1| putative phage repressor [Clostridium phage phiCD27] Length = 151 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + + RI+ +R+ L MS + L G++ +Q+YE G + + +L+ ++ L+ + Sbjct: 10 LEITNRIKNKRLELNMSYQDLANKTGLSKSTLQRYETGAIKNIPLDKLEILAHALDESPA 69 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 F + C I +EN ++ + + + N ++D++ Sbjct: 70 FIMGWNED-CKQIKIKENKLLSSFNALNDIGQNEAIKRVDEL 110 >gi|325262607|ref|ZP_08129344.1| DNA-binding protein [Clostridium sp. D5] gi|324032439|gb|EGB93717.1| DNA-binding protein [Clostridium sp. D5] Length = 365 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 27/40 (67%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 + + + IR +R +G++QE+L LG++ V K+EKG++ Sbjct: 1 MKIHEMIRCKRKEMGLTQEELARYLGVSAPAVNKWEKGLS 40 >gi|302869253|ref|YP_003837890.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504272|ref|YP_004083159.1| transcriptional regulator, xre family [Micromonospora sp. L5] gi|302572112|gb|ADL48314.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410891|gb|ADU09008.1| transcriptional regulator, XRE family [Micromonospora sp. L5] Length = 81 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 30/65 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V RI + R G+S+ +L + LG+ +Q V E+G R I+ E P+ Sbjct: 4 TVHNRIAVLRAERGISRRQLADALGVHYQTVGYLERGEFRPSLHLALRIAAYFEVPVEVV 63 Query: 74 FDVSP 78 F + P Sbjct: 64 FSIEP 68 >gi|332299188|ref|YP_004441110.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332182291|gb|AEE17979.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 165 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I++GK+I R G++Q++L E L ++ Q V K+E V+ + L ++ VL Sbjct: 4 ISIGKKIAELRKAKGLTQDELSEQLNVSPQAVSKWENDVSYPDITLLPKLAAVL 57 >gi|312136891|ref|YP_004004228.1| transcriptional regulator, xre family [Methanothermus fervidus DSM 2088] gi|311224610|gb|ADP77466.1| transcriptional regulator, XRE family [Methanothermus fervidus DSM 2088] Length = 307 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R LG+S + L + + ++ + + KYE+G+ R+ + + L I+F D Sbjct: 128 GRKLRRVREKLGLSLKDLADHINVSRESIYKYERGLGRMSLDVALALEKYLGCKITFSID 187 Query: 76 VSPTVCSDISSEENNVMDF 94 V V ++ E N + F Sbjct: 188 VF-QVPENLKYENKNKIKF 205 >gi|312905525|ref|ZP_07764639.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|310631254|gb|EFQ14537.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 418 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G+ IR+ R G +Q L E +GI+ + K EKG R+ A +L + + L+ I Sbjct: 8 DLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRRLSAEKLNLVLDSLQEEI 64 >gi|304439932|ref|ZP_07399826.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371671|gb|EFM25283.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 138 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 +N+ RIR R I G+SQ++L E LG++ Q + K+E Sbjct: 1 MNLSDRIRELRKIKGISQDELAEKLGVSRQAISKWE 36 >gi|303234360|ref|ZP_07320999.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302494476|gb|EFL54243.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 143 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 36/69 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ ISE L+ IS + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALIN 63 Query: 76 VSPTVCSDI 84 P +I Sbjct: 64 HEPNSIFEI 72 >gi|322384024|ref|ZP_08057751.1| hypothetical protein PL1_2336 [Paenibacillus larvae subsp. larvae B-3650] gi|321151371|gb|EFX44561.1| hypothetical protein PL1_2336 [Paenibacillus larvae subsp. larvae B-3650] Length = 87 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 36/66 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R+ G +Q++ E LGI+ + + +EK + ++++ I EV +P + F S Sbjct: 12 LRSLRIKYGYNQKEAAELLGISERTLGIWEKNSESISYNKIKKIEEVYSTPQDYIFFGSE 71 Query: 79 TVCSDI 84 + S+I Sbjct: 72 SAFSEI 77 >gi|307292241|ref|ZP_07572105.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496747|gb|EFM66300.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 418 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G+ IR+ R G +Q L E +GI+ + K EKG R+ A +L + + L+ I Sbjct: 8 DLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRRLSAEKLNLVLDSLQEEI 64 >gi|264680621|ref|YP_003280531.1| hypothetical protein CtCNB1_4489 [Comamonas testosteroni CNB-2] gi|262211137|gb|ACY35235.1| hypothetical protein CtCNB1_4489 [Comamonas testosteroni CNB-2] Length = 104 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 24/41 (58%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 ++G+RIR RR LG+SQ +L + +T + + E G R Sbjct: 3 HLGERIRARRQALGLSQGRLAQMADVTASAISQIESGAIRT 43 >gi|240143885|ref|ZP_04742486.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|257204077|gb|EEV02362.1| DNA-binding protein [Roseburia intestinalis L1-82] Length = 298 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I +R LGM+Q++L E LG + + V K+E+G+ S + E+L ++ Sbjct: 4 VKIGSYIAEKRKKLGMTQKQLAEKLGKSDKSVSKWERGICLPDVSVYLELCEILGISLNE 63 Query: 73 FF 74 F Sbjct: 64 FL 65 >gi|315649281|ref|ZP_07902370.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275269|gb|EFU38638.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 122 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 46/103 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G RI R G +QE+L +GIT + YEK + L ++++ + I + Sbjct: 1 MNYGVRISELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + + + E + +D + D L R+ + +D K+ Sbjct: 61 LIGRTAQEKAVLDPEVRSFVDGLELSDQDLLERFNLTVDGRKL 103 >gi|295704387|ref|YP_003597462.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294802046|gb|ADF39112.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 297 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ I+ R I M+ +L E GI T +++ ++E+G + L H+S+ L P+++F Sbjct: 7 VGQLIQDLRKIAEMTTVELSE--GICTEEELHRFEQGEIHASSEVLYHLSKRLGVPMNYF 64 Query: 74 FDVSPTVCSDISSE-ENNVMDFISTPD 99 F+ +D S E ++ + +I D Sbjct: 65 FEAGELTPNDYSKEIKSTIRHYIRKRD 91 >gi|262066507|ref|ZP_06026119.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] gi|291379782|gb|EFE87300.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] Length = 94 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 27/45 (60%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 N K P + + + K IR RR L ++QE+ + G++F ++++E Sbjct: 7 NMKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFE 51 >gi|255505928|ref|ZP_05348929.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265073|gb|EET58278.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE---SPIS 71 +G RI+ R +QE++ + +G++ Q+ + E G N + L I+EVL+ I+ Sbjct: 7 LGGRIKALRNAKNFTQEQIADRIGVSRQKYARIENGANSITLDILSAIAEVLDVTVGDIT 66 Query: 72 FFFDVSPTVC 81 D P V Sbjct: 67 KVLDEKPAVA 76 >gi|320160790|ref|YP_004174014.1| Xre family DNA-binding protein [Anaerolinea thermophila UNI-1] gi|319994643|dbj|BAJ63414.1| Xre family DNA-binding protein [Anaerolinea thermophila UNI-1] Length = 224 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RL R G+S +L + GI + YE G + L+ +E LE P+S F Sbjct: 100 IAASLRLFRQKKGISTGELAQKTGIEEDVLLAYENGTREIPLPELETFAEALEVPLSQFL 159 Query: 75 D 75 D Sbjct: 160 D 160 >gi|224542424|ref|ZP_03682963.1| hypothetical protein CATMIT_01606 [Catenibacterium mitsuokai DSM 15897] gi|224524655|gb|EEF93760.1| hypothetical protein CATMIT_01606 [Catenibacterium mitsuokai DSM 15897] Length = 117 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R++ R G++Q++LG +G+ + ++ +YEKGV+ + + I++ L P++ Sbjct: 13 AQRLKAAREDAGLTQKELGMSVGLPQEAAAVRINRYEKGVHDADLATARRIAQSLGVPLA 72 Query: 72 FFF 74 F + Sbjct: 73 FLY 75 >gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 179 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+++R R I ++QE+L E ++ + + E G + HI EVL + Sbjct: 1 MNIGQKLRNLRKIKDLTQEELAERTDLSKGYISQIESGQSSPSMESFLHILEVLGTSPEL 60 Query: 73 FFDVSP 78 FF P Sbjct: 61 FFKEKP 66 >gi|37523824|ref|NP_927201.1| hypothetical protein glr4255 [Gloeobacter violaceus PCC 7421] gi|35214829|dbj|BAC92196.1| glr4255 [Gloeobacter violaceus PCC 7421] Length = 425 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 26/48 (54%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+SQ+ +G+ LG+ V E G V L ++++ + P++FF Sbjct: 27 GLSQQTIGDALGLKRTAVTNMESGKRAVSTLELTRLAQMYDQPVTFFL 74 >gi|301299974|ref|ZP_07206200.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852429|gb|EFK80087.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 119 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ G++++ L + GI+ Q + YE G G+ L I +VL+ P ++F S Sbjct: 9 KLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFPFTYFTAES 68 Query: 78 PTV 80 T Sbjct: 69 KTF 71 >gi|242240628|ref|YP_002988809.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242132685|gb|ACS86987.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 88 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + KR++ R+ ++QEKLG GI + ++ YE G ++ + VL P Sbjct: 2 IPKRLKAARLRANLTQEKLGVLAGIEEATAYSRLSHYENGTHKPTFELACEFARVLNVPE 61 Query: 71 SFFFDVSPTVCSDI 84 +F+ V D+ Sbjct: 62 CYFYIVDDEFAEDV 75 >gi|303244719|ref|ZP_07331050.1| transcriptional regulator, XRE family [Methanothermococcus okinawensis IH1] gi|302484933|gb|EFL47866.1| transcriptional regulator, XRE family [Methanothermococcus okinawensis IH1] Length = 811 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLES 68 N+GK I+ R+ ++QE+L + LG+ T ++ YE GVN + L I+E+L + Sbjct: 558 NIGKLIKYYRLKNKLTQEELLDELGLKTKSLIRDYELGVNNPPRTILNKIAEILNA 613 >gi|160878258|ref|YP_001557226.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426924|gb|ABX40487.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 163 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +GK I RR + G++Q++L + LG+T + + K+E G + L ++E+L Sbjct: 6 IGKFIADRRKVRGLTQQQLADDLGLTNKAISKWETGQGMPDITTLPILAEML 57 >gi|319936228|ref|ZP_08010648.1| HTH domain-containing protein [Coprobacillus sp. 29_1] gi|319808802|gb|EFW05335.1| HTH domain-containing protein [Coprobacillus sp. 29_1] Length = 151 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 DI GK+IR R GM+QE+L L +T Q + +E+ VN Sbjct: 7 DITTGKQIRHLRTQAGMTQEELARELNVTRQALSNWERDVN 47 >gi|242237765|ref|YP_002985946.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242129822|gb|ACS84124.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 144 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R G++Q +L + L ++ Q VQ +E G R+ S L ++ L + Sbjct: 29 LGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRRIQISALPAVARQLSVSLDALL 88 Query: 75 DVSPT 79 S T Sbjct: 89 GDSHT 93 >gi|268592700|ref|ZP_06126921.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291311842|gb|EFE52295.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 112 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N I G IR R G+S +L + + ++ QQ+ +YE+G+N++ L ++S L+ Sbjct: 16 NLFSIYCGLVIRKIRKENGISACELAKQVNVSQQQMSRYERGINKISIDMLFNLSVALDC 75 Query: 69 P 69 P Sbjct: 76 P 76 >gi|312794292|ref|YP_004027215.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181432|gb|ADQ41602.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 144 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 3/98 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS- 71 +++GKRI R G ++ KL E G++ + + E+G+ + + +++I ++ Sbjct: 1 MDIGKRIVELREKYGFTRYKLSELSGVSQSALSEIERGIKQPTITTIENICRAFNLTLAD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FF + P + ++ S N + +P +QL F+Q Sbjct: 61 FFAEKEPEIPPEVRSLINTAANL--SPTQIQLLDSFLQ 96 >gi|146339002|ref|YP_001204050.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191808|emb|CAL75813.1| putative transcriptional regulator, XRE family [Bradyrhizobium sp. ORS278] Length = 481 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 28/53 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 VG R R R LG+SQ +L E LGI+ V E+ V A L ++EV + Sbjct: 11 VGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAEVYD 63 >gi|86751755|ref|YP_488251.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574783|gb|ABD09340.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris HaA2] Length = 305 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+R+R R + GMS++ L + GI+ + + + E G V L+ +S+ L +P+ Sbjct: 13 LELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRVSDALATPL 70 >gi|257064611|ref|YP_003144283.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792264|gb|ACV22934.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 141 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 + VG+RIR R G++Q++L +G+T V+ YE G+ Sbjct: 1 MGVGERIRALRRSAGLTQKELAASIGLTESAVRNYELGL 39 >gi|170699135|ref|ZP_02890189.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170135930|gb|EDT04204.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 108 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGA 56 M G+ IP+ +R++ R+ G++QE+LG GI +V +YEKG + Sbjct: 1 MPGDTTIPSVFS----QRLKQARLRSGLTQEQLGIQAGIDEFSASARVNQYEKGKHTPTV 56 Query: 57 SRLQHISEVLESPISFFFD 75 Q ++ L P SF ++ Sbjct: 57 QTSQRLARALLVPTSFLYE 75 >gi|169351011|ref|ZP_02867949.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] gi|169292073|gb|EDS74206.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] Length = 117 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 38/89 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R+ +SQ+ L E I+ + E+G ++ L I+ L F Sbjct: 8 IGKRIREERISQNLSQQTLAEISNISPTNISHIERGATKLSLPTLVSIANALAVSADFLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 S I +E N + P+ L++ Sbjct: 68 CDSLVEADKIYIDEINELLLDCNPNELKI 96 >gi|85707180|ref|ZP_01038267.1| transcriptional regulator, putative [Roseovarius sp. 217] gi|85668339|gb|EAQ23213.1| transcriptional regulator, putative [Roseovarius sp. 217] Length = 436 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P + +G RIR RR++ G+ Q L + GI+ + E R+G L ++E L+ Sbjct: 2 PDRLMIGTRIRERRVLNGIRQSDLAQQAGISPSYLNLIEHNHRRIGGKTLLKLAEALK 59 >gi|251778290|ref|ZP_04821210.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082605|gb|EES48495.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 183 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 27/39 (69%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 + +G RI+ RR L ++ +++G+ +G+ +Q+YEKG+ Sbjct: 13 LEIGNRIQERRKELKLTLQEVGDIVGVASSTIQRYEKGL 51 >gi|238855118|ref|ZP_04645444.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|260664951|ref|ZP_05865802.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|282934260|ref|ZP_06339535.1| transcriptional repressor [Lactobacillus jensenii 208-1] gi|313472501|ref|ZP_07812991.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|238832258|gb|EEQ24569.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|239529934|gb|EEQ68935.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|260561434|gb|EEX27407.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|281301669|gb|EFA93938.1| transcriptional repressor [Lactobacillus jensenii 208-1] Length = 138 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R+ GMSQE+L L ++ Q V K+E G + +L+ +S++ + I + Sbjct: 4 INERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSKLYDVSIDY 61 >gi|323693263|ref|ZP_08107481.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502746|gb|EGB18590.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 11/100 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I Sbjct: 6 TDITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLK--------KI 57 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 F F V D + E M+ + Q N+Y + I Sbjct: 58 CFLFGVHM---DDFAKEIITKMETCEKKEKRQFNKYDMAI 94 >gi|317502031|ref|ZP_07960214.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896573|gb|EFV18661.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 293 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 29/51 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 ++I+ R G+SQEK+ E +G++ Q + K+E G + L I+ + + Sbjct: 5 EQIKYYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIANLFQ 55 >gi|295696288|ref|YP_003589526.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] gi|295411890|gb|ADG06382.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] Length = 392 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RI RR LG SQE L + LG++ Q + E G + ++ VL + + F Sbjct: 12 AGRRISERRKALGWSQELLADRLGVSRQFIGALEAGRSWPSVPVALELARVLGTSVEALF 71 Query: 75 D 75 D Sbjct: 72 D 72 >gi|218283651|ref|ZP_03489613.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] gi|218215711|gb|EEC89249.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] Length = 145 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +G R++ R+ G+SQE+ GE +GI V K E G N + L I Sbjct: 23 IGTRVKKVRLRKGISQEQFGEIIGIKKAAVSKIENGENSLSKGNLLAI 70 >gi|27382331|ref|NP_773860.1| hypothetical protein bll7220 [Bradyrhizobium japonicum USDA 110] gi|27355502|dbj|BAC52485.1| bll7220 [Bradyrhizobium japonicum USDA 110] Length = 363 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 29/71 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +RL R + G Q + ECL + ++ + E G+ L +E+ P FF Sbjct: 4 TGTMLRLARQLRGFPQNEAAECLRVPNAELSRIENGLKEPSEKLLAAAAEIFSVPQEFFA 63 Query: 75 DVSPTVCSDIS 85 + +S Sbjct: 64 QTDAVYGAPVS 74 >gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] Length = 516 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++Q +L E LG + V + E+G V LQ + L+ I Sbjct: 18 IGALIRDARKHRGLTQVQLAERLGTSQSAVHRMEQGQQNVSIDMLQRVGHALQDDIVSIG 77 Query: 75 DVSPT 79 SPT Sbjct: 78 RPSPT 82 >gi|291326763|ref|ZP_06125781.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313014|gb|EFE53467.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 87 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 +G +R R+ G+S +LG + ++ QQV +YE G+N++ +L Sbjct: 15 LGNHLRKARVSKGLSGNELGSIIHLSQQQVSRYELGINKLSLDKL 59 >gi|325267595|ref|ZP_08134247.1| DNA-binding protein [Kingella denitrificans ATCC 33394] gi|324980945|gb|EGC16605.1| DNA-binding protein [Kingella denitrificans ATCC 33394] Length = 124 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 V +IR+ R I SQE++ E L ++ K E+G + +L+ I+++ + Sbjct: 3 VHDKIRVMREINQWSQEEMAEKLAMSANGYAKIERGQTNINIEKLKQIAQIFNIDMVDLI 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVS 128 + T I N +++++ D QL + D +K + K IE ++ I++ Sbjct: 63 ANQDKTFFFSIGDNNVNSHNYLNSMDKFQL---LLDAKDELLKQKDKEIEALKEIIA 116 >gi|221070070|ref|ZP_03546175.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220715093|gb|EED70461.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 104 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 24/41 (58%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 ++G+RIR RR LG+SQ +L + +T + + E G R Sbjct: 3 HLGERIRARRQALGLSQGRLAQMADVTASAISQIESGAIRT 43 >gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916] gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916] Length = 170 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++ R +S L E GI + K E G ++ LQ I++ ++ PI Sbjct: 1 MEISEKLKDLRTFKNLSTYDLAEKTGIPQSTISKLENGNRKIDTDILQKIADAMDVPIDI 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|268529866|ref|XP_002630059.1| C. briggsae CBR-FUT-5 protein [Caenorhabditis briggsae] Length = 411 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 7/50 (14%) Query: 84 ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 I+ E +N D+I PD + +I +DD K ++ +E ++++ S+EK+Y Sbjct: 308 IAFENSNCKDYI--PDNM-----YIAVDDFKTLKEFVEFIKNLTSNEKEY 350 >gi|307710044|ref|ZP_07646489.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619229|gb|EFN98360.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 260 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +G++I+ R+ G +Q++LG +GI+ + YEKG + + ++ I Sbjct: 6 IAIVIGEKIKQYRLANGWTQQELGAKIGISKNAIGNYEKGFRSPKKNTMFDLANAFNVSI 65 Query: 71 SFFF-----DVSPTVC 81 F D PT Sbjct: 66 DDLFPPIQKDTPPTTS 81 >gi|293568750|ref|ZP_06680064.1| transcriptional regulator, putative [Enterococcus faecium E1071] gi|291588467|gb|EFF20301.1| transcriptional regulator, putative [Enterococcus faecium E1071] Length = 270 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 VG RIR R L +S EK G+ +G + V +E+G+N L I+EV Sbjct: 8 VGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEV 59 >gi|323526715|ref|YP_004228868.1| XRE family transcriptional regulator with shikimate kinase activity [Burkholderia sp. CCGE1001] gi|323383717|gb|ADX55808.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1001] Length = 330 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 35/70 (50%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ Sbjct: 31 TGEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQ 90 Query: 62 ISEVLESPIS 71 I+ L P++ Sbjct: 91 IAATLNCPLA 100 >gi|257883805|ref|ZP_05663458.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257819643|gb|EEV46791.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] Length = 221 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|163784885|ref|ZP_02179654.1| hypothetical protein HG1285_00035 [Hydrogenivirga sp. 128-5-R1-1] gi|159879846|gb|EDP73581.1| hypothetical protein HG1285_00035 [Hydrogenivirga sp. 128-5-R1-1] Length = 128 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 22/36 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 GK IR R LG++QE+ + LG+ F V ++E G Sbjct: 2 TGKEIRELRKKLGLTQEEFAQLLGVGFTTVNRWENG 37 >gi|220928893|ref|YP_002505802.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999221|gb|ACL75822.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 182 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ RI+ R++ G ++E++ + LGI Q + YE + + S L ++E+ + I+ Sbjct: 7 DIAVRIKGLRLLAGYTEEEVADQLGIKLDQYKLYENAEDDIPVSLLYELAEIYKVNITEI 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + DI + +GL++ RY Sbjct: 67 LTGTSPKLHDICH--------VKKGEGLKVERY 91 >gi|157369784|ref|YP_001477773.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157321548|gb|ABV40645.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 103 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ G+SQEKLG GI ++ +YEKG + +++VL P S+ Sbjct: 4 KRLKEARLKAGLSQEKLGILAGIDEASASARMNQYEKGKHTPDFEMACSLAKVLGIPESY 63 Query: 73 FF 74 F+ Sbjct: 64 FY 65 >gi|89055187|ref|YP_510638.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864736|gb|ABD55613.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 440 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 11/98 (11%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS-----------R 58 P D G RIR RR+ +G+ Q L E +G++ + E ++G Sbjct: 8 PDDHLTGSRIRERRLAMGLKQGVLAEIVGVSPSYLNLIEHNHRKIGGKLLLALARALEVE 67 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS 96 ++E +++ IS D + D+ +E V + ++ Sbjct: 68 ASALTEGVDAGISELLDAAARALGDVPAETARVDELVA 105 >gi|325912400|ref|ZP_08174795.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|325475742|gb|EGC78913.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 109 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R++ ++Q++L G+T ++ YE G +LQ ISE + IS + Sbjct: 4 GKKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISETFDCDISALIN 63 Query: 76 VSPT 79 P Sbjct: 64 HEPN 67 >gi|149175620|ref|ZP_01854240.1| hypothetical protein PM8797T_16353 [Planctomyces maris DSM 8797] gi|148845605|gb|EDL59948.1| hypothetical protein PM8797T_16353 [Planctomyces maris DSM 8797] Length = 566 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 13/111 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + +++M L + GE G Q ++ Y R A I E++ P++ F Sbjct: 366 GQYVNVKQMGLALEALIRGEYPGDYLQFIEMYTFAKPRTAA----EIVELMPKPVTIF-- 419 Query: 76 VSPTVCSDISSEENNVMDFISTPD------GLQLNRYFIQIDDVKVRQKII 120 P V + + N+ + I P LQL+R+F+ + D RQ I+ Sbjct: 420 -DPVVRLKVDMSDENISEQIVPPHFTNIQHALQLSRHFLALQDTPNRQIIL 469 >gi|325264849|ref|ZP_08131577.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029838|gb|EGB91125.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 538 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 12/63 (19%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK +LR++ SQEK+ E ++ Q VQK+E G + L I+E +F Sbjct: 6 IGKLRKLRKI----SQEKMAEMFSVSRQAVQKWENGTSVPDLDNLVRIAE--------YF 53 Query: 75 DVS 77 DVS Sbjct: 54 DVS 56 >gi|227113779|ref|ZP_03827435.1| hypothetical protein PcarbP_12478 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 87 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI +V +YE G++R + ++VL P S+F Sbjct: 5 RLKSARLNAHLTQEKLGILAGIEEETARSRVSQYENGIHRPTFEMMCAFAKVLNVPESYF 64 Query: 74 FDV 76 + V Sbjct: 65 YTV 67 >gi|262370712|ref|ZP_06064037.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314512|gb|EEY95554.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 182 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 33/54 (61%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +V + +R R + G+SQ++L + G++ + V E G + + ++L I++VLE Sbjct: 9 HVSQNVRHYRSLKGLSQQQLADLAGLSRRMVAGVESGQDNISLAKLSLIADVLE 62 >gi|228930120|ref|ZP_04093130.1| TnsA endonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829619|gb|EEM75246.1| TnsA endonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 887 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-----VRSIV 127 ++D T+ D + E + F TPD L L R +QI++ K +++I+L VR Sbjct: 80 YYDQPITLKLDYTRENGRRISFFYTPDFLVLRRDGVQIEEWKTEEQLIKLSQKDPVRYFK 139 Query: 128 SSEKKYRTIEEECMVEQ 144 E ++R E Q Sbjct: 140 DEEGRWRCPPAEAAASQ 156 >gi|229084370|ref|ZP_04216650.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] gi|228698910|gb|EEL51615.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] Length = 107 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR-LQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + + + L+ I+ VL++P+ Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQTPVDTL 61 Query: 74 FDVSPTVCSDISSEENN-VMDFISTPDGLQLNRYFIQIDDVKVRQK 118 P S + SE + V + +S+ + R F++ K QK Sbjct: 62 LHDEPAAESQLDSEWTHLVKEAMSSGVSKEQFREFLEFTKWKQNQK 107 >gi|297588232|ref|ZP_06946875.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573605|gb|EFH92326.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 179 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/68 (26%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ LG++QE+L E +T + + E+ + L + L + ++ Sbjct: 1 MEIGEKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNDLLNALGTDMAT 60 Query: 73 FFDVSPTV 80 FF P+V Sbjct: 61 FFMDKPSV 68 >gi|217965105|ref|YP_002350783.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290893768|ref|ZP_06556748.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|217334375|gb|ACK40169.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290556717|gb|EFD90251.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|307570335|emb|CAR83514.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes L99] gi|313609965|gb|EFR85345.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 180 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|182625365|ref|ZP_02953138.1| putative helix-turn-helix domain protein [Clostridium perfringens D str. JGS1721] gi|177909362|gb|EDT71814.1| putative helix-turn-helix domain protein [Clostridium perfringens D str. JGS1721] Length = 224 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 9/100 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+ ++I R G+S+ +L +G++ + K E G + L+ I+ LE P++ Sbjct: 1 MNLNEKITFYREKKGISKSQLAREIGVSPAYITKLENGEKTNPSLELKVKIANALEQPLT 60 Query: 72 FFFDVSPT--VCSDISSE------ENNVMDFISTPDGLQL 103 F + +PT + S I S ++N + I+ D LQL Sbjct: 61 VFLENNPTNNIGSKIKSAKILNNLDDNQLSEITGIDKLQL 100 >gi|312864376|ref|ZP_07724609.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100097|gb|EFQ58308.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 135 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 6/55 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG------VNRVGASRLQHIS 63 VG++++ R++ ++QE++ + LG++ Q V +E+G V+ + S L H+S Sbjct: 4 VGQQLQSARLLSDLTQEEVADSLGVSRQTVSNWERGKTYPDIVSLIALSNLYHLS 58 >gi|307729113|ref|YP_003906337.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583648|gb|ADN57046.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1003] Length = 330 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 35/69 (50%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 32 GEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQI 91 Query: 63 SEVLESPIS 71 + L P++ Sbjct: 92 AATLNCPLA 100 >gi|251794968|ref|YP_003009699.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542594|gb|ACS99612.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 272 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + I + R G +QE+L LGI+FQ V K+E + S L + LE I Sbjct: 5 LARSIAIYRKERGFTQEELATKLGISFQAVSKWENALTMPDLSLLPELCRTLEVSI 60 >gi|222084519|ref|YP_002543048.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721967|gb|ACM25123.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 189 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I +G RI+ R+ GM+ ++L ++ + + E+ AS L + L + Sbjct: 5 LEIAIGARIKQLRIARGMTLDELANASAVSRAMISRIERAEASPTASLLARLCAALGLSL 64 Query: 71 SFFF-----DVSPTVCSD 83 S FF DVSP SD Sbjct: 65 SSFFAEEEEDVSPLARSD 82 >gi|325833019|ref|ZP_08165646.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485736|gb|EGC88201.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 242 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 40/80 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + +R+ R G SQE+L E LG++ Q V K+E+ + L ++++ + Sbjct: 11 MNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVSL 70 Query: 71 SFFFDVSPTVCSDISSEENN 90 + V D++ EE + Sbjct: 71 DDLLRIDEDVVDDVAFEEKD 90 >gi|293571244|ref|ZP_06682278.1| transcriptional regulator, xre family [Enterococcus faecium E980] gi|291608651|gb|EFF37939.1| transcriptional regulator, xre family [Enterococcus faecium E980] Length = 221 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|15485441|emb|CAC67535.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 232 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 12/60 (20%), Positives = 35/60 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + LGI++Q +E+G+ ++ + ++L+ +F ++ Sbjct: 5 EKLKARRKELKLTQKDIADQLGISYQAYSAWERGIKEPSKEKVNRLEQLLKVSKGYFTEI 64 >gi|260432990|ref|ZP_05786961.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416818|gb|EEX10077.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 431 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 27/55 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D G RIR RR+I G+ Q +L +GI+ + E R+G L I+ L Sbjct: 3 DTLTGSRIRERRLISGLKQAQLARQVGISASYLNLIEHNRRRIGGKLLVDIASAL 57 >gi|251782746|ref|YP_002997049.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391376|dbj|BAH81835.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 257 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+++ R G+SQE L E +G T Q + K+E +L +S V E + + Sbjct: 1 MNFGEKLFKLRKEKGISQENLAEQIGTTRQAISKWENNQGFPEVEKLLQLSNVFEVSVDY 60 Query: 73 FFDVSPTV-CSD 83 TV CS+ Sbjct: 61 LLKDDKTVNCSN 72 >gi|148266629|ref|YP_001245572.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392669|ref|YP_001315344.1| hypothetical protein SaurJH1_0195 [Staphylococcus aureus subsp. aureus JH1] gi|257793983|ref|ZP_05642962.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258408610|ref|ZP_05680895.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421201|ref|ZP_05684128.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258438949|ref|ZP_05690040.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258444184|ref|ZP_05692518.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258447065|ref|ZP_05695215.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258448523|ref|ZP_05696636.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258455756|ref|ZP_05703711.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282893361|ref|ZP_06301594.1| transcriptional regulator [Staphylococcus aureus A8117] gi|282926312|ref|ZP_06333944.1| transcriptional regulator [Staphylococcus aureus A10102] gi|295405474|ref|ZP_06815284.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296274946|ref|ZP_06857453.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus MR1] gi|297209290|ref|ZP_06925689.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244811|ref|ZP_06928691.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300911288|ref|ZP_07128737.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|147739698|gb|ABQ47996.1| transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|149945121|gb|ABR51057.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257787955|gb|EEV26295.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840619|gb|EEV65078.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842625|gb|EEV67047.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257847825|gb|EEV71821.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850443|gb|EEV74391.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854078|gb|EEV77031.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257858154|gb|EEV81042.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257861968|gb|EEV84741.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282591641|gb|EFB96712.1| transcriptional regulator [Staphylococcus aureus A10102] gi|282764047|gb|EFC04174.1| transcriptional regulator [Staphylococcus aureus A8117] gi|294969549|gb|EFG45568.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296886223|gb|EFH25157.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178328|gb|EFH37575.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300887467|gb|EFK82663.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 65 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R+ L M+Q++L +G+T Q + EKGV+ S ++I VL + F P Sbjct: 5 LKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIFGEKP 64 >gi|293553401|ref|ZP_06674032.1| transcriptional regulator, xre family [Enterococcus faecium E1039] gi|291602414|gb|EFF32635.1| transcriptional regulator, xre family [Enterococcus faecium E1039] Length = 221 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 >gi|228961895|ref|ZP_04123447.1| hypothetical protein bthur0005_53050 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797786|gb|EEM44847.1| hypothetical protein bthur0005_53050 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 70 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ +S EKL + + I Q + EKG + V A R + IS + P+ +FF Sbjct: 6 RVSKSISLEKLSQKIHIKPQVLHAIEKGKSGVNAERAEKISAIFNKPVEYFF 57 >gi|315180160|gb|ADT87074.1| hypothetical protein vfu_A01915 [Vibrio furnissii NCTC 11218] gi|315181548|gb|ADT88461.1| hypothetical protein vfu_B00214 [Vibrio furnissii NCTC 11218] gi|315181554|gb|ADT88467.1| hypothetical protein vfu_B00220 [Vibrio furnissii NCTC 11218] Length = 173 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 19/132 (14%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL---ESPI 70 +V KR R + G+ Q ++ E +G+T Q K+E G N+ A ++ ++E+L ES I Sbjct: 7 DVLKRTREAK---GLKQAQVAEYVGVTAQTYMKWENGKNQPKADDIKKLAEILGVSESEI 63 Query: 71 ----SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRS 125 +F + P ++ N +D ++ L F I D ++K IE L + Sbjct: 64 CRGETFADNADPLTFMKKTAVMKNALDEVTFTSVL-----FEFIQD---KKKFIERLEQE 115 Query: 126 IVSSEKKYRTIE 137 ++E YR E Sbjct: 116 AFATEDAYRRYE 127 >gi|300825209|ref|ZP_07105298.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|300522328|gb|EFK43397.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|323968639|gb|EGB64044.1| helix-turn-helix protein [Escherichia coli M863] Length = 216 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 ++G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 5 SLGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYL 64 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + VS T + + + + ++S Sbjct: 65 LYGVSSTEPTLVQNNSGTQIPYLS 88 >gi|307276551|ref|ZP_07557669.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506661|gb|EFM75813.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 270 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 VG RIR R L +S EK G+ +G + V +E+G+N L I+EV Sbjct: 8 VGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEV 59 >gi|257125192|ref|YP_003163306.1| XRE family transcriptional regulator [Leptotrichia buccalis C-1013-b] gi|257049131|gb|ACV38315.1| transcriptional regulator, XRE family [Leptotrichia buccalis C-1013-b] Length = 255 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPIS 71 + + ++++ R+ M+Q +L E LGI+ +QKYE G ++ + + ++ + SP Sbjct: 1 MKINEKLKDLRLKNNMTQRELAEKLGISIPTLQKYEYGTLKIKNEVILSLCDIFDISPDD 60 Query: 72 FFFDVSPTVCSDISSEENNVM 92 FF +DI E +N++ Sbjct: 61 FF----NEKRNDIFKETDNLL 77 >gi|212711743|ref|ZP_03319871.1| hypothetical protein PROVALCAL_02818 [Providencia alcalifaciens DSM 30120] gi|212685845|gb|EEB45373.1| hypothetical protein PROVALCAL_02818 [Providencia alcalifaciens DSM 30120] Length = 106 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N + VG +R R M+ ++L + +GI+ QQ+ +YE G+ + +L H VL+ Sbjct: 3 SNIISGQVGAFLRKSRKEKNMTGKQLAKLIGISQQQISRYEMGITSITLEQLDHFLIVLD 62 Query: 68 SPISFFFDVSPTVCSDISSEE 88 + DV + + SE+ Sbjct: 63 KR---WIDVINYIEKNTESEK 80 >gi|16799870|ref|NP_470138.1| hypothetical protein lin0796 [Listeria innocua Clip11262] gi|16413247|emb|CAC96028.1| lin0796 [Listeria innocua Clip11262] gi|313619917|gb|EFR91474.1| DNA-binding protein [Listeria innocua FSL S4-378] Length = 180 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|314939175|ref|ZP_07846431.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314941485|ref|ZP_07848373.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314950591|ref|ZP_07853672.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314992445|ref|ZP_07857868.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996689|ref|ZP_07861713.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313589173|gb|EFR68018.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313593020|gb|EFR71865.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313597216|gb|EFR76061.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313599702|gb|EFR78545.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313641522|gb|EFS06102.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 221 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|293376903|ref|ZP_06623120.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644449|gb|EFF62542.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 192 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE--KGVNRVGASRLQHISEVLESPI 70 + +G++I+ R G+SQE+L E L ++ Q V K+E KG+ + LQ I+++ + Sbjct: 3 MTLGEKIKKYRQAGGLSQEQLSEKLSVSRQAVTKWESDKGIPDI--HNLQAIAKLFNVSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 + + S + EE ++ + T Sbjct: 61 DSLLAMDEKIGSIVLKEEIDIEKYKKT 87 >gi|149909139|ref|ZP_01897797.1| hypothetical protein PE36_17760 [Moritella sp. PE36] gi|149807890|gb|EDM67835.1| hypothetical protein PE36_17760 [Moritella sp. PE36] Length = 68 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 INVG +I++RR + +SQ+KL I V + E+G + +L I+EVLE Sbjct: 6 INVGLKIKVRRKEMRVSQDKLALLADIDRSYVGRIERGEVNITLEKLYQIAEVLE 60 >gi|316936268|ref|YP_004111250.1| XRE family transcriptional regulator with shikimate kinase activity [Rhodopseudomonas palustris DX-1] gi|315603982|gb|ADU46517.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris DX-1] Length = 305 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 7/88 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ +R R GMS++ L + GI+ + + + E G V L+ ISE L +P+ Sbjct: 13 LDLGRHVRTMRGRRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRISEALATPLE- 71 Query: 73 FFDVSPTVCSDISSEENNVMDFI--STP 98 D+ P+ ++ S++ + D + +TP Sbjct: 72 --DLLPS--NETSADWPVIRDLVRRATP 95 >gi|212224524|ref|YP_002307760.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212009481|gb|ACJ16863.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 243 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVL 66 GK +R R I G+SQ +L E LG++ + YE G + GAS ++ E L Sbjct: 24 GKTMRKWREIFGISQTELAEYLGVSSSVISDYEGGRRKSPGASTIRKFVEAL 75 >gi|37528130|ref|NP_931475.1| hypothetical protein plu4299 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787567|emb|CAE16671.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 32/70 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN + G+R+R RM GMSQE + G+ + E+GV + I+ Sbjct: 2 KKPNTIKSIFGQRVRYIRMASGMSQEAFADKCGLDRTYISGIERGVRNPTLEVINVIASG 61 Query: 66 LESPISFFFD 75 L+ + FD Sbjct: 62 LQIELKDLFD 71 >gi|237739262|ref|ZP_04569743.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229422870|gb|EEO37917.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 106 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 27/45 (60%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 N K P + + + K IR RR L ++QE+ + G++F ++++E Sbjct: 19 NMKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFE 63 >gi|330874849|gb|EGH08998.1| hypothetical protein PSYMP_08490 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 83 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 34/70 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G++IR RR+ G++Q +L +T Q+V EKG VG + L+ + Sbjct: 6 ITTRLGEQIRQRRLNRGLTQARLAALAAVTRQKVIAIEKGDLSVGMMAYARVLGALDCEL 65 Query: 71 SFFFDVSPTV 80 S PT+ Sbjct: 66 SVIPAAMPTL 75 >gi|167957582|ref|ZP_02544656.1| UDP-N-acetylglucosamine transferase [candidate division TM7 single-cell isolate TM7c] Length = 508 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G I+ R++ G +Q +L E L + + + EKG + + I EVL PI Sbjct: 10 IGNLIQENRIMRGWTQAQLAEALDTSQSAINRIEKGGQNISLEMIARIGEVLARPI 65 >gi|313884124|ref|ZP_07817890.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312620571|gb|EFR31994.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 138 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D ++G+ I RR LGM+Q L +G+T + V K+E+ ++ S + +++E L+ Sbjct: 3 DDSLGRLIANRRKELGMTQLDLARRMGVTDKAVSKWERDLSFPDLSSIPNLAETLD 58 >gi|299536255|ref|ZP_07049568.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728241|gb|EFI68803.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 388 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R++ R+ +S +L E L +T Q V KYE G + + ++++L P FF+ Sbjct: 7 GQRLKEARLYNKLSITELAEKLNVTKQMVSKYESGKSDPSFEKSLLLTDILGYPREFFY 65 >gi|313624590|gb|EFR94572.1| DNA-binding protein [Listeria innocua FSL J1-023] Length = 180 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] Length = 378 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +GK I R G++QE+LG LG++ + + ++E G S L +SE L+ Sbjct: 6 IGKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNYMPDLSLLIPLSETLD 58 >gi|207857403|ref|YP_002244054.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709206|emb|CAR33539.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 231 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M +L E +G+ + + E G + L +++ L I+ Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLSVDIA 60 Query: 72 FFFDVSP---TVC--SDISSEENNVMDF 94 F P TVC SD+ + NV D Sbjct: 61 ELFTSDPKGNTVCKHSDMRKDSANVKDL 88 >gi|22538252|ref|NP_689103.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22535165|gb|AAN00976.1|AE014287_16 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 306 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKR+R + L +S G LG+ + Y +G N L+ +S++ P+ +F+ Sbjct: 12 VGKRLRQVKDELNLSFTDFGNRLGLKKSTINAYVRGDNLAPLEVLEKVSKIYGKPVGWFY 71 >gi|307149949|ref|YP_003885333.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980177|gb|ADN12058.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 143 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 R++ G++QE+L E LG+ QQVQ+ E N+ + L I EV+ + Sbjct: 88 RIVRGLTQEQLAESLGVKPQQVQRDE--ANKYSGASLAKILEVVRA 131 >gi|167580903|ref|ZP_02373777.1| transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 132 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 VG I +R G++Q KL E + + + + ++E+G RLQ +S+ L+ Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALD 73 >gi|154497828|ref|ZP_02036206.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] gi|150273326|gb|EDN00471.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] Length = 122 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 ++ +G R++ R G++QE+L E + IT Q + E+G + LQ + VL Sbjct: 8 NVQIGARVKEAREAAGLTQERLAELIDITAQYLSGVERGAVGLSVPVLQRLCSVL 62 >gi|133919924|emb|CAM12484.1| hypothetical protein [uncultured bacterium] Length = 136 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + G++++ R LG++Q++L E +G+T + + YE +R G R + ++ L ++ Sbjct: 1 MTFGEKVKAERTKLGLNQDELAEKIGVTRRVICSYENDKSRPRGTERYKKLAGALNVNVN 60 Query: 72 FFFDVSPTVCSDI 84 + +D+ Sbjct: 61 YLLSEDDAFIADV 73 >gi|325526296|gb|EGD03907.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 132 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I +R G++Q KL E + + + + ++E+G RLQ +S+ L+ + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALDCSVDQLL 80 >gi|325840878|ref|ZP_08167213.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490135|gb|EGC92473.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 330 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I R GMSQE+L LG+T Q + +E+G+ + L ++ + E+ + Sbjct: 6 LGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDL---- 61 Query: 75 DVSPTVCSDISSE--ENNV--MDFISTPDGLQLNRYFI 108 D + SDI E E N+ M ++ L YF+ Sbjct: 62 DGLMGIKSDIKEEPVELNLKPMKWMYLTQLFSLIGYFV 99 >gi|313499032|gb|ADR60398.1| Prophage PSPPH03, Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 293 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R+ L +SQ+K+ + G+T V Y KG+N + A ++ +LE P+ F SP + Sbjct: 25 RKNELKLSQKKIADEAGMTPAAVNLYFKGLNPLNAKFAAVLARLLEVPVEQF---SPRLA 81 Query: 82 SDISS 86 +I S Sbjct: 82 DEIRS 86 >gi|196251156|ref|ZP_03149833.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196209320|gb|EDY04102.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 136 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL-QHIS 63 +K V N G +R R G S ++L E G++ + + EKG R + + I+ Sbjct: 2 RKSDRAVSNNFGSTLRYWREKRGYSLQQLYEKTGVSAGYLNRLEKGERRAPSIPIASKIA 61 Query: 64 EVLESPISFFFDVSPT 79 E L P+S D+S T Sbjct: 62 EALGIPLSLLLDISTT 77 >gi|253699444|ref|YP_003020633.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774294|gb|ACT16875.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 106 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R +SQE+L E +GI + + + E G + RL+ I+ L + FF Sbjct: 8 LGARIKELRKGRKLSQEELAELIGIEPRHMSRIEVGKSYPSLDRLERIAMALNVDLRDFF 67 Query: 75 DVSPTVCSDISSEE-NNVMDFISTPD 99 D + ++ ++ N+++ ++ D Sbjct: 68 DFAHLEARPVNVDQINDILKEMTDED 93 >gi|120435032|ref|YP_860718.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577182|emb|CAL65651.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 136 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 ++G++I R + GM QE L E LGI+ Q V K E+ +V +L I++VL Sbjct: 9 HIGRKIGRIRELRGMKQETLAEELGISQQAVSKIEQS-EKVEDDKLNQIAKVL 60 >gi|307544496|ref|YP_003896975.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216520|emb|CBV41790.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 195 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+ +VG R+R R + G+SQ +L + G+T + E+G S L+ I + + Sbjct: 11 DPMADDVGARLRALRNLRGISQRELAKRCGVTHSSLSLIEQGKVSPSVSSLKKILDAIPM 70 Query: 69 PISFFF 74 + FF Sbjct: 71 SVGDFF 76 >gi|325677790|ref|ZP_08157432.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324110344|gb|EGC04518.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 197 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 29/52 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G++I+ R G+++ + E LG +Q++E G + L HI++VL Sbjct: 137 IGRKIQKYREERGLTRNEFAEMLGCVMPTIQRWESGTRVPDVTMLMHIAKVL 188 >gi|54308994|ref|YP_130014.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46913424|emb|CAG20212.1| putative transcriptional regulator [Photobacterium profundum SS9] Length = 101 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQ++LG LG+ ++ YEKG + + L+ I++ L P+S+F Sbjct: 10 RLKEARKAAGISQKELGIRLGMDPSSASGRMNHYEKGRHMPDIATLRRIADELGVPLSYF 69 Query: 74 F 74 F Sbjct: 70 F 70 >gi|83648921|ref|YP_437356.1| Zn peptidase [Hahella chejuensis KCTC 2396] gi|83636964|gb|ABC32931.1| predicted Zn peptidase [Hahella chejuensis KCTC 2396] Length = 387 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R L R G+++ L + +G+T + + YE G + ++ I+ L P+ FFF Sbjct: 6 RFALARKRRGLTKRALAKEVGVTDRSITAYESGQTVPESQTVEKIASALRFPVEFFF 62 >gi|170696008|ref|ZP_02887146.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] gi|170139088|gb|EDT07278.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] Length = 330 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 35/69 (50%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 32 GEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQI 91 Query: 63 SEVLESPIS 71 + L P++ Sbjct: 92 AATLNCPLA 100 >gi|317054120|ref|YP_004118145.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952115|gb|ADU71589.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 199 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 35/71 (49%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D NVG R+R R GM E++ E +G++ + + E+ V + + L + EV+ Sbjct: 15 NTPDFNVGIRLRAVRKARGMRIEEVAEKVGVSKSFISRLERNVTQASIATLLKVCEVVGI 74 Query: 69 PISFFFDVSPT 79 + FD T Sbjct: 75 TPAKLFDPPST 85 >gi|58699195|ref|ZP_00374007.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534291|gb|EAL58478.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 147 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 30/52 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G++I R++ G +Q +L +G+T+Q+V YE G + L I+ VL Sbjct: 29 IGQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVL 80 >gi|325838540|ref|ZP_08166562.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490835|gb|EGC93137.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 110 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE--KGVNRVGASRLQHISEVLESPI 70 + +G++I+ R G+SQE+L E L ++ Q V K+E KG+ + LQ I+++ + Sbjct: 3 MTLGEKIKKYRQARGLSQEQLSEKLSVSRQAVTKWESDKGIPDI--HNLQAIAKLFNVSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 + + S + EE ++ + T Sbjct: 61 DSLLAMDEKIGSIVLKEEIDIEKYKKT 87 >gi|303246095|ref|ZP_07332376.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492491|gb|EFL52362.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 35/61 (57%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+I+ R ++QEKL + G++ Q + + E+G + ++ +S+ L+ P++ F Sbjct: 9 GKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLSKALDIPMAELFS 68 Query: 76 V 76 + Sbjct: 69 L 69 >gi|296876453|ref|ZP_06900504.1| possible transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432446|gb|EFH18242.1| possible transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 108 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRIR+ R GM+QE+L E + K E + S L+ I + L + FF Sbjct: 8 ISKRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIDALNVDLQTFF 67 Query: 75 DVS 77 D++ Sbjct: 68 DLT 70 >gi|262283472|ref|ZP_06061238.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260963|gb|EEY79663.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 170 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|126699363|ref|YP_001088260.1| putative transcriptional regulator [Clostridium difficile 630] gi|260683416|ref|YP_003214701.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260687012|ref|YP_003218145.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296450990|ref|ZP_06892737.1| transcriptional regulator [Clostridium difficile NAP08] gi|296879044|ref|ZP_06903040.1| transcriptional regulator [Clostridium difficile NAP07] gi|115250800|emb|CAJ68624.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209579|emb|CBA63210.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213028|emb|CBE04367.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296260208|gb|EFH07056.1| transcriptional regulator [Clostridium difficile NAP08] gi|296429917|gb|EFH15768.1| transcriptional regulator [Clostridium difficile NAP07] Length = 87 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I++ R LG++QE+LG +G + Q + E G N IS + PI F F+ Sbjct: 4 KIKILREKLGLTQEQLGRLVGTSRQAINAIETGKNEPSIWLAYDISRIFNEPIESVFLFE 63 Query: 76 VS 77 S Sbjct: 64 ES 65 >gi|312279272|gb|ADQ63929.1| Transcriptional regulator, xre family [Streptococcus thermophilus ND03] Length = 170 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|312862452|ref|ZP_07722695.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319945713|ref|ZP_08019964.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|311102095|gb|EFQ60295.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319748073|gb|EFW00316.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|328945360|gb|EGG39513.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1087] gi|332364441|gb|EGJ42213.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 170 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|293567401|ref|ZP_06678750.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] gi|291589918|gb|EFF21717.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] Length = 221 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|210630657|ref|ZP_03296539.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] gi|210160390|gb|EEA91361.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] Length = 152 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 31/72 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ G RIR R G+ Q +L E G+T V+ YE G+ L+ I+ LE + Sbjct: 11 DMADGSRIRELRTRRGLLQRELAEMAGVTESAVRNYELGLRTPRPQHLKAIARALEVDPA 70 Query: 72 FFFDVSPTVCSD 83 D D Sbjct: 71 SLVDYGVDTARD 82 >gi|327393407|dbj|BAK10829.1| putative transcriptional regulator from phage origin [Pantoea ananatis AJ13355] Length = 230 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR-LQHISEVLESPIS 71 +N+G +IR R GM E+L E +G+ + + E G + + + I++ L+ +S Sbjct: 1 MNIGNKIRSLRKARGMKIEELAEAVGVDGANISRLETGKQKSFTEQSINKIAKALKVDVS 60 Query: 72 FFFDVS---PTVCSD---ISSEENNVM 92 F PTV +D + +E N M Sbjct: 61 ELFATGTAEPTVYNDSRNVQEQEPNAM 87 >gi|212709326|ref|ZP_03317454.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens DSM 30120] gi|212688238|gb|EEB47766.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens DSM 30120] Length = 112 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK +R R G S K+ + LGI+ Q +YE G R+ L I VL+ FF Sbjct: 19 IGKELRCIRKRKGFSGAKIAKQLGISQQHYSRYECGKCRISVDTLLSILFVLDFDFGDFF 78 >gi|309778439|ref|ZP_07673354.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308913802|gb|EFP59627.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 211 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+ I+ R GM Q++L + +GI Q + K E+G+N L+ I +VL Sbjct: 11 LGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGMNYPTFDTLEKIMDVL 62 >gi|289434995|ref|YP_003464867.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171239|emb|CBH27781.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 115 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 G+RI+ RR LG + + L E LG++ + +YE G + ++ + L +S +L++ ++ Sbjct: 3 TGERIKKRRKELGYNADYLAEELGVSRSTIFRYENGEIEKLPITILDSLSNILKTTPAYL 62 Query: 74 FDVSPTVCSDISSEEN 89 + EN Sbjct: 63 MGWVDDGAEHLEDSEN 78 >gi|119387120|ref|YP_918175.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377715|gb|ABL72479.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 213 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 31/64 (48%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +VG R++ R MSQ +L E G+ QV E G + + L+ I L +S Sbjct: 24 DFDVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGVTMS 83 Query: 72 FFFD 75 FF+ Sbjct: 84 EFFE 87 >gi|330875430|gb|EGH09579.1| Helix-turn-helix domain protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 372 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPISFFF 74 ++RL R G S ++GE LG+T Q K E +N + +L+ + E+L SFFF Sbjct: 18 KLRLARCASGRSLAEIGELLGVTRQYAHKLE--INSIPNPGQLKQLCEILNVKESFFF 73 >gi|237736495|ref|ZP_04566976.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229421537|gb|EEO36584.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 187 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 38/64 (59%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GK+I+ R+ ++ ++L E +G+T + + E+ + + L+ IS+ L+ P+ Sbjct: 6 LDLGLGKKIQNYRLNKKLTIKELSEKIGMTSSMLSQIERDLVNPSIATLRAISKALDVPL 65 Query: 71 SFFF 74 FF Sbjct: 66 FMFF 69 >gi|228478091|ref|ZP_04062702.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] gi|228250271|gb|EEK09524.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] Length = 169 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|225570544|ref|ZP_03779569.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] gi|225160741|gb|EEG73360.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] Length = 367 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 24/38 (63%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 +N+GK I R G++QE+L E +G++ V K+E G Sbjct: 4 VNIGKNIMKYRRETGITQEQLAEHMGVSKSSVSKWETG 41 >gi|163814737|ref|ZP_02206126.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] gi|158450372|gb|EDP27367.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] Length = 108 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R + ++QE+LG + + + + E G + RL +S L+ +F Sbjct: 12 IGQRIKYARKSMNLTQEELGRLMCTDGKYISRLESGKSLPSLKRLVQLSRALKCTCDYFL 71 Query: 75 ---DVSPTVCSDISSE 87 DV T D+ E Sbjct: 72 WDMDVPETGSEDVDIE 87 >gi|312144436|ref|YP_003995882.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905087|gb|ADQ15528.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] Length = 178 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 19/136 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR +R MS + + + T + + E+G+ + L+ I+ LE PI +F Sbjct: 2 LGQRIRNKRKSKSMSLNDVAQKINKTSSYLSQVERGLAEPSITALREIARALEVPIFYFL 61 Query: 75 DVSPTVCSDISSEENNVMDF--------ISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + E+ +++F + +PD LNR D++V + +E Sbjct: 62 IEEESHNAVVRKEQRRILNFPGSHLTFELLSPD---LNR------DMEVIEACME--PGA 110 Query: 127 VSSEKKYRTIEEECMV 142 +SE+ + EEC + Sbjct: 111 ETSEEPLNHLGEECTI 126 >gi|237742940|ref|ZP_04573421.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|229430588|gb|EEO40800.1| transcriptional regulator [Fusobacterium sp. 4_1_13] Length = 94 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 27/45 (60%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 N K P + + + K IR RR L ++QE+ + G++F ++++E Sbjct: 7 NIKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFE 51 >gi|118445204|ref|YP_891173.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196047678|ref|ZP_03114883.1| transcriptional regulator [Bacillus cereus 03BB108] gi|118419765|gb|ABK88183.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196021503|gb|EDX60205.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 116 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R M+QE+LG+ +G++ + +EKG G L+ I++ + Sbjct: 2 IGEKIKELRKNSKMTQEQLGDAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYLL 61 Query: 75 DVS--PTVCSD----ISSEENNVMDFIST 97 S P + + +S E N++ I + Sbjct: 62 GRSEDPELNEEEDKTVSEEGKNILAIIES 90 >gi|69245018|ref|ZP_00603176.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257879285|ref|ZP_05658938.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881898|ref|ZP_05661551.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890113|ref|ZP_05669766.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615689|ref|ZP_05713459.1| hypothetical protein EfaeD_08257 [Enterococcus faecium DO] gi|260558729|ref|ZP_05830918.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|293563230|ref|ZP_06677683.1| transcriptional regulator, putative [Enterococcus faecium E1162] gi|294622366|ref|ZP_06701395.1| transcriptional regulator, putative [Enterococcus faecium U0317] gi|314937319|ref|ZP_07844659.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314943378|ref|ZP_07850149.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314949074|ref|ZP_07852436.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|314953479|ref|ZP_07856395.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994167|ref|ZP_07859474.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995977|ref|ZP_07861057.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|68196019|gb|EAN10451.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257813513|gb|EEV42271.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817556|gb|EEV44884.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826473|gb|EEV53099.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260075188|gb|EEW63501.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291598126|gb|EFF29229.1| transcriptional regulator, putative [Enterococcus faecium U0317] gi|291604825|gb|EFF34306.1| transcriptional regulator, putative [Enterococcus faecium E1162] gi|313589853|gb|EFR68698.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591434|gb|EFR70279.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594512|gb|EFR73357.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597922|gb|EFR76767.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313643270|gb|EFS07850.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313644551|gb|EFS09131.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 270 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 VG RIR R L +S EK G+ +G + V +E+G+N L I+E+ Sbjct: 8 VGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEI 59 >gi|325265770|ref|ZP_08132457.1| DNA-binding protein [Kingella denitrificans ATCC 33394] gi|324982753|gb|EGC18378.1| DNA-binding protein [Kingella denitrificans ATCC 33394] Length = 132 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 21/110 (19%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI------ 70 ++IRL R I SQE++ E L ++ K E+G ++ RLQ I+++ E + Sbjct: 5 EKIRLIREIKQWSQEQMAEKLEMSANGYAKIERGETKLTLPRLQKIADIFEMNLNELAQE 64 Query: 71 ---SFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 SF + + T C++I + S G ++N I+I+ +K+ Sbjct: 65 NEQSFMVVIGENSTYCTNIHT---------SISSG-KINELIIEIEKLKL 104 >gi|212696814|ref|ZP_03304942.1| hypothetical protein ANHYDRO_01377 [Anaerococcus hydrogenalis DSM 7454] gi|212676104|gb|EEB35711.1| hypothetical protein ANHYDRO_01377 [Anaerococcus hydrogenalis DSM 7454] Length = 217 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 14/63 (22%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + + RI+ +R LG + E++G+ +G+T +Q+YE G + + + +++ ++ L + + Sbjct: 1 MKLADRIKYKRNQLGKTLEEVGQKVGVTKATIQRYENGNIQNIPSDKIELLAAALNTTPA 60 Query: 72 FFF 74 + Sbjct: 61 YLM 63 >gi|118462695|ref|YP_881469.1| prophage regulatory ptotein [Mycobacterium avium 104] gi|118163982|gb|ABK64879.1| putative prophage regulatory ptotein [Mycobacterium avium 104] Length = 194 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 21/43 (48%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 D VG IR R G+ Q LGE LG+ Q + K E G V Sbjct: 4 DQEVGANIRRFRQARGLPQAALGEPLGLNQQAIAKIENGTRAV 46 >gi|312867912|ref|ZP_07728116.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096316|gb|EFQ54556.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 170 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|297204967|ref|ZP_06922364.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|297148807|gb|EDY60951.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 419 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G + LRR G++Q +LG +G++ +Q+ YE+G + RL+ ++ L++ Sbjct: 11 GSLVLLRRKA-GLTQAQLGAAVGVSARQIASYEQGAHAPSPRRLRLMARALKT 62 >gi|260662347|ref|ZP_05863242.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260553038|gb|EEX25981.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 378 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 25/41 (60%) Query: 33 LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 L E +G++ Q + +YE+G + G Q I + L+ P++FF Sbjct: 24 LSEEIGVSKQMISRYERGTAQPGLDVFQQIVKSLQFPVAFF 64 >gi|261208781|ref|ZP_05923218.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565534|ref|ZP_06445981.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294614441|ref|ZP_06694357.1| helix-turn-helix domain protein [Enterococcus faecium E1636] gi|294617957|ref|ZP_06697562.1| helix-turn-helix domain protein [Enterococcus faecium E1679] gi|260077283|gb|EEW65003.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162616|gb|EFD10469.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291592749|gb|EFF24342.1| helix-turn-helix domain protein [Enterococcus faecium E1636] gi|291595766|gb|EFF27054.1| helix-turn-helix domain protein [Enterococcus faecium E1679] Length = 270 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 VG RIR R L +S EK G+ +G + V +E+G+N L I+E+ Sbjct: 8 VGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEI 59 >gi|218134626|ref|ZP_03463430.1| hypothetical protein BACPEC_02529 [Bacteroides pectinophilus ATCC 43243] gi|217990011|gb|EEC56022.1| hypothetical protein BACPEC_02529 [Bacteroides pectinophilus ATCC 43243] Length = 107 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+RI+ R M++++L E +G++ ++K E GVN L I+E+ + + Sbjct: 6 VNSGERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHITLDY 65 Query: 73 F 73 Sbjct: 66 L 66 >gi|294617175|ref|ZP_06696830.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] gi|291596575|gb|EFF27813.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] Length = 221 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|227357001|ref|ZP_03841373.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227162879|gb|EEI47838.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 85 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 VGKRI+ RR L +S K+ LG+T Q K E G ++ L I+ +L+ SP S Sbjct: 7 VGKRIQNRRKELNISSSKIALQLGMTEQYYLKLENGYTKITVDELICIAIILKVSPQSLL 66 Query: 74 F 74 Sbjct: 67 L 67 >gi|291543170|emb|CBL16280.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 164 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 I +GK I R G++QEKLGE +G+T + + +E G Sbjct: 4 IKIGKFIATLRRQSGLTQEKLGEKIGVTNKTISPWENG 41 >gi|169824019|ref|YP_001691630.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|167830824|dbj|BAG07740.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] Length = 176 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 29/45 (64%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE+L + + Q V K+E+G++ + L +SE+L++ +S Sbjct: 16 GLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILQTSVS 60 >gi|83720019|ref|YP_443629.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83653844|gb|ABC37907.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 80 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P + +G+ IR R G+SQE+L GI + + E+G N L +I+E L Sbjct: 10 HPTLVALGRAIRRIRKDRGLSQEQLALTAGIDVSYLGRVERGDNNASVLALHYIAEAL 67 >gi|75676148|ref|YP_318569.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74421018|gb|ABA05217.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 410 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G+SQ+ + E LG+ V E G V L ++++ +FF Sbjct: 7 LGDRLRAARERRGLSQQAVAEALGLPRTAVTNMESGTRSVSTLELTRLADLYGQQATFFL 66 Query: 75 DV 76 + Sbjct: 67 SM 68 >gi|217978763|ref|YP_002362910.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217504139|gb|ACK51548.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 217 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R L ++ +L G++ + K E G S LQ ++ L P+S FF Sbjct: 36 IGAQIRMHRKRLDITGGELAAAAGLSTGMLSKIENGQISPSLSTLQSLARALNQPLSSFF 95 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 EE++ F+ G+ + R Sbjct: 96 ---------TPFEEHHDCSFVKAGRGVNIER 117 >gi|324992265|gb|EGC24187.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] Length = 169 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|70730925|ref|YP_260666.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345224|gb|AAY92830.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens Pf-5] Length = 126 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R LG+SQ+ GE G+ KYE G A + ++S V + Sbjct: 9 GIGSRLRQERERLGLSQKVFGEIGGVEANAQGKYESGDR---APKADYLSRVAAKGVDVL 65 Query: 74 FDVS----PTVCSDISSEENNVMD 93 + ++ P +S E V+D Sbjct: 66 YVLTGSRIPIQSGGLSQTEEKVLD 89 >gi|89073167|ref|ZP_01159706.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|89051120|gb|EAR56577.1| transcriptional regulator, putative [Photobacterium sp. SKA34] Length = 106 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 14/84 (16%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISE 64 NP+ + + K IR + I SQ++LG +GI ++ +YEKG + S L+ +++ Sbjct: 5 NPIPVRL-KEIRKKTKI---SQKELGIRIGIDESSASARMNQYEKGKHTPDISTLKKMAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEE 88 L P+++FF C D SS E Sbjct: 61 ELGVPLNYFF------CEDESSAE 78 >gi|34763122|ref|ZP_00144092.1| Transcriptional regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887220|gb|EAA24321.1| Transcriptional regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 94 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 27/45 (60%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 N K P + + + K IR RR L ++QE+ + G++F ++++E Sbjct: 7 NIKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFE 51 >gi|332637123|ref|ZP_08415986.1| putative transcriptional regulator [Weissella cibaria KACC 11862] Length = 137 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +DI +++ R G+SQ++L + L +T Q V K+E G + +R+Q I+++L+ Sbjct: 1 MDIVFAQQLTNLRKQKGLSQQQLADKLYMTRQAVSKWETGESSPDLNRMQEIADILD 57 >gi|257437945|ref|ZP_05613700.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199605|gb|EEU97889.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 231 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+L R G++Q++ E LG++ + YEKG+ G + +++ +++VS Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVAD--------YYNVSC 58 Query: 79 TVCSDISSEENNVM---DFISTPDGLQLNRY 106 S+E N +M D + PD ++ N Y Sbjct: 59 DYLLGRSAERNGMMLNADDLPNPDKMKDNVY 89 >gi|227357992|ref|ZP_03842334.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906] gi|227161727|gb|EEI46759.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906] Length = 100 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Query: 9 NPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 N V+INV G IR R +LG+S + LG+ L ++ Q + + E+G Sbjct: 4 NTVNINVRVGSFIRRHRTLLGISGKSLGKKLNLSQQHISRLERG 47 >gi|192293630|ref|YP_001994235.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192287379|gb|ACF03760.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris TIE-1] Length = 305 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++G+ +R R GMS++ L + GI+ + + + E G V L+ ISE L +P+ Sbjct: 13 LDLGRHVRTMRGRRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRISEALATPL 70 >gi|327473031|gb|EGF18458.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK408] Length = 170 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|257414283|ref|ZP_04745847.2| putative transcriptional regulator [Roseburia intestinalis L1-82] gi|257200563|gb|EEU98847.1| putative transcriptional regulator [Roseburia intestinalis L1-82] Length = 107 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+RI+ R M++++L E +G++ ++K E GVN L I+E+ + + Sbjct: 6 VNSGERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHISLDY 65 Query: 73 F 73 Sbjct: 66 L 66 >gi|146343555|ref|YP_001208603.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196361|emb|CAL80388.1| Shikimate kinase [Bradyrhizobium sp. ORS278] Length = 307 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+R+R R + GMS++ L E GI+ + + + E G V L+ I+ + +P+ Sbjct: 25 LGQRVRRMRGLAGMSRKVLAEVSGISERYIAQLESGKGNVSIVLLRRIANAINAPL 80 >gi|325688546|gb|EGD30563.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK72] Length = 170 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|225377903|ref|ZP_03755124.1| hypothetical protein ROSEINA2194_03563 [Roseburia inulinivorans DSM 16841] gi|260438260|ref|ZP_05792076.1| putative transcriptional regulator [Butyrivibrio crossotus DSM 2876] gi|225210234|gb|EEG92588.1| hypothetical protein ROSEINA2194_03563 [Roseburia inulinivorans DSM 16841] gi|292809280|gb|EFF68485.1| putative transcriptional regulator [Butyrivibrio crossotus DSM 2876] Length = 107 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+RI+ R M++++L E +G++ ++K E GVN L I+E+ + + Sbjct: 6 VNSGERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHITLDY 65 Query: 73 F 73 Sbjct: 66 L 66 >gi|188491757|ref|ZP_02999027.1| putative DNA-binding protein [Escherichia coli 53638] gi|188486956|gb|EDU62059.1| putative DNA-binding protein [Escherichia coli 53638] Length = 130 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 L ++Q +LG LG+ Q VQ + KGV +L+ ++E+ + P+ +FF Sbjct: 14 LNINQSELGRRLGVKPQSVQGWLKGV-MPRMDKLEKLAELSQHPVHWFF 61 >gi|296328537|ref|ZP_06871056.1| XRE family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154346|gb|EFG95145.1| XRE family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 94 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 27/45 (60%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 N K P + + + K IR RR L ++QE+ + G++F ++++E Sbjct: 7 NIKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFE 51 >gi|229827176|ref|ZP_04453245.1| hypothetical protein GCWU000182_02561 [Abiotrophia defectiva ATCC 49176] gi|229788794|gb|EEP24908.1| hypothetical protein GCWU000182_02561 [Abiotrophia defectiva ATCC 49176] Length = 109 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++I +GK+I+ R+ GM+QE+L E L + YE + S L+ I+++L Sbjct: 1 MERKMEITLGKKIKEYRLKRGMTQEELAERLFSRKSTISDYENDKIDIKISILREIAKIL 60 Query: 67 ESPISFFF 74 P+ F Sbjct: 61 GMPLFCFL 68 >gi|240144293|ref|ZP_04742894.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203709|gb|EEV01994.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 111 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ +G+SQ+ L + L ++ Q + KYE N L+ ++++ + + + S Sbjct: 3 RLKDLRLKMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLIGYS 62 >gi|225377886|ref|ZP_03755107.1| hypothetical protein ROSEINA2194_03546 [Roseburia inulinivorans DSM 16841] gi|225210255|gb|EEG92609.1| hypothetical protein ROSEINA2194_03546 [Roseburia inulinivorans DSM 16841] Length = 107 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+RI+ R M++++L E +G++ ++K E GVN L I+E+ + + Sbjct: 6 VNSGERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHITLDY 65 Query: 73 F 73 Sbjct: 66 L 66 >gi|218547977|ref|YP_002381768.1| Cro/CI family transcriptional regulator [Escherichia fergusonii ATCC 35469] gi|218355518|emb|CAQ88129.1| putative transcriptional regulator, Cro/CI family from phage origin [Escherichia fergusonii ATCC 35469] Length = 228 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +R+++ R I GMSQ +L E +G++ Q V K E G + +++ I++VL Sbjct: 3 TLAERLKIGREIAGMSQAQLAEKIGLSQQSVAKIENG-ETLQPRKIKEIAKVL 54 >gi|258510478|ref|YP_003183912.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477204|gb|ACV57523.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 163 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R+ R G+SQ L E L +T Q+ YE+G L+ +++ + I F Sbjct: 3 MTFGERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGTREPDIETLKKLADFFDVSIDF 62 Query: 73 FFDVSPTVCSDISSEENNV 91 P V SD + N V Sbjct: 63 LVLGKPNV-SDFNGLTNEV 80 >gi|325697795|gb|EGD39679.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] gi|327466976|gb|EGF12490.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 170 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|310644824|ref|YP_003949583.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309249775|gb|ADO59342.1| Transcriptional regulator [Paenibacillus polymyxa SC2] Length = 114 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG RIR R G +QE+L E G+ + + E+G + L+ I L+ P Sbjct: 6 SVGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALKVPPFEL 65 Query: 74 FDVSPTV 80 F T Sbjct: 66 FQFDETT 72 >gi|257879451|ref|ZP_05659104.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|323142576|ref|ZP_08077392.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|332655057|ref|ZP_08420798.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|257813679|gb|EEV42437.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|322413009|gb|EFY03912.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|332515917|gb|EGJ45526.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 149 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++I+ R+ + +SQ +L + GI+ + + YE+ S ++ ++E L +S+ Sbjct: 1 MTFGEKIKEARLAMNLSQTELAQMTGISERSLYTYEQLGTLPRKSNIRKLAEALHISVSY 60 Query: 73 FFDVSPT 79 D S T Sbjct: 61 LLDESET 67 >gi|227519526|ref|ZP_03949575.1| possible transcriptional repressor [Enterococcus faecalis TX0104] gi|257090868|ref|ZP_05585229.1| predicted protein [Enterococcus faecalis CH188] gi|312902504|ref|ZP_07761710.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227072975|gb|EEI10938.1| possible transcriptional repressor [Enterococcus faecalis TX0104] gi|256999680|gb|EEU86200.1| predicted protein [Enterococcus faecalis CH188] gi|310634174|gb|EFQ17457.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579687|gb|EFU91878.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 162 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 7/67 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R+ ++QE+L G+ + KYEKG ++++ + +S FF Sbjct: 16 MGERIKRLRLEKNLTQEELASKFGLKRAAINKYEKG-------NVENMKRSVIEDMSKFF 68 Query: 75 DVSPTVC 81 VSP+ Sbjct: 69 GVSPSYL 75 >gi|330871213|gb|EGH05922.1| hypothetical protein PSYAE_28973 [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 83 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++IR RR+ G++Q +L +T Q++ EKG VG + + L+ +S V Sbjct: 12 EQIRQRRLNRGLTQARLAAMAAVTRQKIIAVEKGDLSVGMTAYARVLGALDCELSVIPAV 71 Query: 77 SPTV 80 PT+ Sbjct: 72 MPTL 75 >gi|39937845|ref|NP_950121.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651705|emb|CAE30227.1| possible Shikimate kinase with a Helix-turn-helix domain [Rhodopseudomonas palustris CGA009] Length = 305 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++G+ +R R GMS++ L + GI+ + + + E G V L+ ISE L +P+ Sbjct: 13 LDLGRHVRTMRGRRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRISEALATPL 70 >gi|323353576|ref|ZP_08088109.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121522|gb|EFX93285.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 170 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|303327942|ref|ZP_07358381.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302861768|gb|EFL84703.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 156 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I+ RR LG++QE L E +G+ Q + + E+G RL ++ L ++ F Sbjct: 50 VGTNIQERRKKLGLTQECLAEKIGVGQQSLSRMERGDIAPKLERLPDVAATLRCSVADLF 109 Query: 75 DVS 77 S Sbjct: 110 RAS 112 >gi|302557707|ref|ZP_07310049.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] gi|302475325|gb|EFL38418.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] Length = 509 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E L + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQTQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|331090228|ref|ZP_08339116.1| hypothetical protein HMPREF1025_02699 [Lachnospiraceae bacterium 3_1_46FAA] gi|330402174|gb|EGG81746.1| hypothetical protein HMPREF1025_02699 [Lachnospiraceae bacterium 3_1_46FAA] Length = 346 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + IR +R L ++QE++ E LG++ V K+EKG + L ++ +L Sbjct: 1 MKINQIIREKRKELSLTQEQIAELLGVSTPAVNKWEKGSTYPDITLLPALARLL 54 >gi|322376841|ref|ZP_08051334.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321282648|gb|EFX59655.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 288 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R++ RR L MSQ +L E GI Q Q+ + E G GA L +S+ L+ I +F Sbjct: 5 LATRLKNRRKELKMSQRELAE--GICKQGQISRLENGEFTPGADFLYALSKKLKVSIDYF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 F+ D SE + T + +Y +++ VKV Sbjct: 63 FNEQIVEEIDELSEFKKLAQTFITNRNYESLKYIYELESVKVHH 106 >gi|282866826|ref|ZP_06275862.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558318|gb|EFB63884.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 509 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E L + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|260893514|ref|YP_003239611.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260865655|gb|ACX52761.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 256 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPIS 71 INVG+RIRL R G S ++L GI+ + + E+G S L+ ++E L +P++ Sbjct: 72 INVGERIRLLRTEKGWSLQELACRAGISASYLSEIERGTVYPSLSTLKRLAEELGVAPVT 131 Query: 72 FF 73 F Sbjct: 132 FL 133 >gi|332798162|ref|YP_004459661.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695897|gb|AEE90354.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 123 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIR R LG+S+E+ E +G++ + + E+G ++ L ++ L + + Sbjct: 8 IGKRIREEREKLGLSREEFAEIIGLSDYYIGQLERGERQMSMPTLIKVANCLHVSLDYL 66 >gi|237734947|ref|ZP_04565428.1| predicted protein [Mollicutes bacterium D7] gi|229381723|gb|EEO31814.1| predicted protein [Coprobacillus sp. D7] Length = 264 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G RI R LG +Q++LG + ++ + V K+E+G+ S L +SE L+ I Sbjct: 6 IGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMSI 61 >gi|254461150|ref|ZP_05074566.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206677739|gb|EDZ42226.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 190 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 12/98 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G +R R G++ L + L + + + E+ ++ L+ I+++L+ P+S Sbjct: 11 SLGADLRALRKSRGLTLSDLADALDRSLGWISQVERDLSEPSVFDLKQIAKILDVPVSIL 70 Query: 74 FDVSPTVCSD------------ISSEENNVMDFISTPD 99 F +PT + I S+E +++ + +PD Sbjct: 71 FGQAPTPAQEAGIIVRAHARRPIGSKEQGLVEELLSPD 108 >gi|182435303|ref|YP_001823022.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775942|ref|ZP_08235207.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] gi|178463819|dbj|BAG18339.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656275|gb|EGE41121.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] Length = 509 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E L + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|322390777|ref|ZP_08064288.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142532|gb|EFX37999.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 169 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|89896705|ref|YP_520192.1| hypothetical protein DSY3959 [Desulfitobacterium hafniense Y51] gi|89336153|dbj|BAE85748.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 106 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + +R R G++Q++L + LG+ + +EKG N + S L +I LE + + Sbjct: 1 MAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLDDIY 60 Query: 75 DVS 77 +S Sbjct: 61 GIS 63 >gi|116628413|ref|YP_821032.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116101690|gb|ABJ66836.1| transcriptional regulator, XRE family [Streptococcus thermophilus LMD-9] Length = 289 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 15/109 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI+ RR L MSQ++L E GI Q Q+ + E G G+ L +S L + +F Sbjct: 5 LASRIKNRRKELKMSQKELAE--GICKQGQISRLENGEYIPGSVLLHELSRKLNVSMDYF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 FD ISS N + +F +L++ FI D + I EL Sbjct: 63 FD------EQISSGSNKLNNFK------KLSKTFITQRDYESLNYIYEL 99 >gi|322386654|ref|ZP_08060279.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269327|gb|EFX52262.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|222153050|ref|YP_002562227.1| phage repressor-like protein [Streptococcus uberis 0140J] gi|222113863|emb|CAR42005.1| putative phage repressor-like protein [Streptococcus uberis 0140J] Length = 230 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 GK+++ R MSQE LG+ LG+ + +EKG N +H++++LE Sbjct: 4 GKQLKTIRQKHQMSQESLGQKLGVNKMTISNWEKGKN---VPNQKHLNQLLE 52 >gi|197287313|ref|YP_002153185.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194684800|emb|CAR46871.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 85 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 VGKRI+ RR L +S K+ LG+T Q K E G ++ L I+ +L+ SP S Sbjct: 7 VGKRIQNRRKELNISSSKIALQLGMTEQYYLKLENGYTKITVDELICIAIILKVSPQSLL 66 Query: 74 F 74 Sbjct: 67 L 67 >gi|257792196|ref|YP_003182802.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476093|gb|ACV56413.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 380 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 25/39 (64%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 +++ + +R+ RR G+SQE L LG++ Q V K+E+ Sbjct: 1 MNVEIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWER 39 >gi|145595679|ref|YP_001159976.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305016|gb|ABP55598.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 83 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V RI + R G+S+ +L + LG+ +Q + E+G R I+ E P+ Sbjct: 4 TVHNRIAVLRAERGISRRQLADALGVHYQTIGYLERGEFRPSLHLALRIAAYFEVPVEVV 63 Query: 74 FDVSP 78 F + P Sbjct: 64 FSIEP 68 >gi|116688944|ref|YP_834567.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116647033|gb|ABK07674.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 132 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 VG I +R G++Q KL E + + + V ++E+G RLQ +S+ L Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAVSRWERGTRVPTLHRLQQLSDAL 72 >gi|332523455|ref|ZP_08399707.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332314719|gb|EGJ27704.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 359 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I L R LGM+QEKL + L +T + K+E + L ++++ F Sbjct: 2 IGDTIFLERTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILLAKL--------F 53 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D++ D+ + + DF T QL Q ++++ Q+I EL + ++ K Sbjct: 54 DMT---LDDLVGFQKTLTDFERTELFNQLKEKINQTEELEFFQEIEELSKHYINDFK 107 >gi|319654086|ref|ZP_08008178.1| hypothetical protein HMPREF1013_04798 [Bacillus sp. 2_A_57_CT2] gi|317394279|gb|EFV75025.1| hypothetical protein HMPREF1013_04798 [Bacillus sp. 2_A_57_CT2] Length = 312 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++GK+I+ R + GM Q +L E GI Q Q+ K EKG +S L I+ L+ +S+ Sbjct: 6 SLGKKIKEIRKVRGMKQYELAE--GICSQAQISKIEKGQVEPLSSTLYLIANKLDVDVSY 63 Query: 73 FF 74 FF Sbjct: 64 FF 65 >gi|317490116|ref|ZP_07948605.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325833610|ref|ZP_08166059.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316910821|gb|EFV32441.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325485534|gb|EGC88003.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 380 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 25/39 (64%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 +++ + +R+ RR G+SQE L LG++ Q V K+E+ Sbjct: 1 MNVEIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWER 39 >gi|225017440|ref|ZP_03706632.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] gi|224949850|gb|EEG31059.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-- 75 +I+ R +G+SQEKL E +G++ Q + K+E G+ ++ +SE + + Sbjct: 13 KIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDYLLKDN 72 Query: 76 -VSPTVCSDISSEENNVMDFISTPDG 100 PT + + + N M + + G Sbjct: 73 ITEPTPPQESALKGNKRMSWRTWLGG 98 >gi|212709332|ref|ZP_03317460.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] gi|212688244|gb|EEB47772.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] Length = 99 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 6/81 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R+ G+S+++L + ++ QQV +YE+GV+ + + + L P F Sbjct: 7 IGNFIRNARVSKGLSEKELASLISVSQQQVSRYERGVSTLSIQNILILLNALNIP---FD 63 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + S + I E+N + D + Sbjct: 64 EFSHKI---IKPEQNRLFDLL 81 >gi|293376878|ref|ZP_06623096.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644488|gb|EFF62580.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 330 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G +I R GMSQE+L LG+T Q + +E+G+ + L ++ + E+ Sbjct: 6 LGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFET 59 >gi|221232058|ref|YP_002511210.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|220674518|emb|CAR69079.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] Length = 286 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ +R G SQ+ L E GI Q Q+ K E+G A L ++ L+ P+ +F Sbjct: 4 LSDKLKAKRKEKGFSQKTLSE--GICEQSQISKIERGNYMPAADLLYKLANRLQVPLDYF 61 Query: 74 FDVSPTVCSDIS 85 FD + S+I+ Sbjct: 62 FDEQIEMTSNIT 73 >gi|89075656|ref|ZP_01162057.1| hypothetical protein SKA34_03965 [Photobacterium sp. SKA34] gi|89048663|gb|EAR54236.1| hypothetical protein SKA34_03965 [Photobacterium sp. SKA34] Length = 155 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 7/90 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++RL+R G SQE+L + G++ + +Q+ E+G + G L+ ++ V E +S + Sbjct: 4 RKLRLQR---GWSQEQLSQLSGLSIRTIQRIEQG-QKAGLESLKSLAAVFEIQVS-DLQM 58 Query: 77 SPTVCSDIS--SEENNVMDFISTPDGLQLN 104 P + +IS +E ++++ G N Sbjct: 59 EPPMNKEISVTEDEKKALNYVKGIKGFYSN 88 >gi|257892777|ref|ZP_05672430.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|257829156|gb|EEV55763.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] Length = 221 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNRNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 >gi|256849649|ref|ZP_05555081.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|256713765|gb|EEU28754.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] Length = 187 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R LG++Q+++ + IT K EKG NR+ L I + +S+ Sbjct: 1 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY 60 Query: 73 FFD 75 F D Sbjct: 61 FVD 63 >gi|237733689|ref|ZP_04564170.1| phosphoribosylformylglycinamidine cyclo-ligase [Mollicutes bacterium D7] gi|229383287|gb|EEO33378.1| phosphoribosylformylglycinamidine cyclo-ligase [Coprobacillus sp. D7] Length = 415 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 +++N VG+ I L+R G++Q++L L ++FQ V K+E G Sbjct: 2 INVNKVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENG 42 >gi|15964249|ref|NP_384602.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073425|emb|CAC41933.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] Length = 89 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +RL R+ G+SQE+L I V + E+G+ V S ++ ++ LE P++ F Sbjct: 7 MGWNLRLLRVERGLSQERLAFEARIDRAYVGRVERGMENVTISTIEALARALEVPVAALF 66 >gi|167758894|ref|ZP_02431021.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] gi|167663634|gb|EDS07764.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] Length = 108 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 17/65 (26%), Positives = 35/65 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+RI+ R+ L M+QE+L E + ++ + + E+G ++ L +I+ L + + Sbjct: 4 IALGRRIKEERLKLNMTQERLAEEVNLSTSYIGQIERGERKLTLDSLINITNCLGVTVDY 63 Query: 73 FFDVS 77 S Sbjct: 64 LLQES 68 >gi|226948120|ref|YP_002803211.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] gi|226840862|gb|ACO83528.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] Length = 384 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 D+N+GK I +R G++QE+L +G++ V K+E G Sbjct: 6 DLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESG 44 >gi|167755197|ref|ZP_02427324.1| hypothetical protein CLORAM_00702 [Clostridium ramosum DSM 1402] gi|167705247|gb|EDS19826.1| hypothetical protein CLORAM_00702 [Clostridium ramosum DSM 1402] Length = 264 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G RI R LG +Q++LG + ++ + V K+E+G+ S L +SE L+ I Sbjct: 6 IGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMSI 61 >gi|254881885|ref|ZP_05254595.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641112|ref|ZP_07995815.1| hypothetical protein HMPREF9011_01412 [Bacteroides sp. 3_1_40A] gi|254834678|gb|EET14987.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387243|gb|EFV68119.1| hypothetical protein HMPREF9011_01412 [Bacteroides sp. 3_1_40A] Length = 143 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 7/68 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPI 70 ++VG I RR+ LG+S+ +LG +G+T Q V + ++R + SRL +SE L+ Sbjct: 8 VHVGAEIEKRRVELGISKSELGRRIGVTQQHVNRI---LDRETMETSRLVKVSEALD--Y 62 Query: 71 SFFFDVSP 78 +FF P Sbjct: 63 NFFLLFCP 70 >gi|253315441|ref|ZP_04838654.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|315130180|gb|EFT86168.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus CGS03] Length = 61 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R+ L M+Q++L +G+T Q + EKGV+ S ++I VL + F P Sbjct: 1 MKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIFGEKP 60 >gi|229015366|ref|ZP_04172383.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] gi|228745922|gb|EEL95908.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] Length = 157 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI------SEVLES 68 + K+I+L R G +Q+K+ E LGI+ + + + EKG G + I SEVL+S Sbjct: 10 ISKKIKLIRTEKGYTQDKMAEVLGISKKTLVQIEKGRTNAGWTNTVAICALFRDSEVLQS 69 Query: 69 PI 70 + Sbjct: 70 SL 71 >gi|291286857|ref|YP_003503673.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884017|gb|ADD67717.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 244 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 19/110 (17%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I+ R I +Q K+ + L IT+Q Q +EK N + ++ I+ L + Sbjct: 4 HIGEKIKDLRRIKNYTQVKIADILSITYQTYQHHEKTGN-FDSHKIIKIANALGVDYNTI 62 Query: 74 FDV------------SPTVCSDISSEENNVMDFISTPDGLQLNRY-FIQI 110 FD+ SP V SD+ N+ PD + N + FI + Sbjct: 63 FDLETPASLAKNRYSSPLVSSDVQVYYGNI-----PPDVINKNAFEFIPV 107 >gi|148378839|ref|YP_001253380.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932486|ref|YP_001383224.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934537|ref|YP_001386771.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288323|emb|CAL82400.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928530|gb|ABS34030.1| HTH domain protein [Clostridium botulinum A str. ATCC 19397] gi|152930451|gb|ABS35950.1| HTH domain protein [Clostridium botulinum A str. Hall] Length = 373 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 D+N+GK I +R G++QE+L +G++ V K+E G Sbjct: 3 DLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESG 41 >gi|295094125|emb|CBK83216.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 242 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R G++QE+ E +G++ Q V K+E+ RL I E+L+ + Sbjct: 4 IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVG 60 >gi|223985675|ref|ZP_03635723.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] gi|223962366|gb|EEF66830.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] Length = 283 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 38/67 (56%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K + N + G+ IR R+ G +Q++LG +GI+ + + K+E+G++ + L Sbjct: 5 MTEDKIMQNLTEERTGQLIRELRLKAGWTQKELGMKIGISDKAISKWERGLSFPDITLLP 64 Query: 61 HISEVLE 67 ++EV Sbjct: 65 RLAEVFH 71 >gi|113460568|ref|YP_718632.1| transcriptional regulator [Haemophilus somnus 129PT] gi|112822611|gb|ABI24700.1| transcriptional regulator [Haemophilus somnus 129PT] Length = 146 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R+ ++Q++L G+T ++ YE G +LQ I++ L IS D Sbjct: 4 GKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNIEQLQKIADALNCDISALID 63 Query: 76 VSPTVCSDI 84 P +I Sbjct: 64 HDPNSIFEI 72 >gi|322388761|ref|ZP_08062358.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140380|gb|EFX35888.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 169 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAE--------Y 58 Query: 74 FDVSPTVCSDISSE 87 F+ +PT S E Sbjct: 59 FNATPTQLFGTSKE 72 >gi|227878081|ref|ZP_03996068.1| possible transcriptional regulator [Lactobacillus crispatus JV-V01] gi|227862319|gb|EEJ69851.1| possible transcriptional regulator [Lactobacillus crispatus JV-V01] Length = 196 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R LG++Q+++ + IT K EKG NR+ L I + +S+ Sbjct: 1 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY 60 Query: 73 FFD 75 F D Sbjct: 61 FVD 63 >gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] Length = 187 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R ++QE+L + +G+ + KYE G+ S+LQ I+ L P+ D+ Sbjct: 5 QIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIEPSVSQLQKIASALGVPMMELLDL 63 >gi|324996098|gb|EGC28009.1| transcriptional regulator [Streptococcus sanguinis SK678] Length = 386 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R++ R+ S ++ E L ++ Q V KYEKG L+ + + L+ P FFF Sbjct: 8 GARLKEARLFNKKSITQIAEFLNVSKQMVSKYEKGRATPSEESLEILEKKLKFPRDFFF 66 >gi|311278398|ref|YP_003940629.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747593|gb|ADO47345.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 83 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R+ +G+SQE + GI + E+GV + IS+ LE +S F Sbjct: 11 LGERIRTLRLDMGLSQEAFADKCGIDRTYMSGIERGVRNPTLIVICAISDGLEMDLSHLF 70 Query: 75 DVSPTVCSD 83 + +D Sbjct: 71 MFADGAHAD 79 >gi|302390193|ref|YP_003826014.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302200821|gb|ADL08391.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 121 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 36/74 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+GKRIR R+ ++QE+LGE + + + + E+G L I++ L + + Sbjct: 9 NIGKRIRQIRLQRDLTQEELGERANLHYSYIGQVERGDKLPSLKTLSKIAKALNVSLDYV 68 Query: 74 FDVSPTVCSDISSE 87 + T + +E Sbjct: 69 LEDPATYEAQPDTE 82 >gi|291279081|ref|YP_003495916.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290753783|dbj|BAI80160.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 196 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DIN+G+RIR R GM+ + + G + + + E V + L I+ VL ++ Sbjct: 5 DINIGERIRKLRNDRGMTLQDVANLTGFSKALISQIENNVVMPPITTLAKIANVLNVKMT 64 Query: 72 FFFD 75 +FF+ Sbjct: 65 YFFE 68 >gi|289168100|ref|YP_003446369.1| transcriptional regulator [Streptococcus mitis B6] gi|288907667|emb|CBJ22504.1| transcriptional regulator [Streptococcus mitis B6] Length = 288 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R++ RR L MSQ +L E GI Q Q+ + E G GA L +S+ L+ I +F Sbjct: 5 LATRLKNRRKELKMSQRELAE--GICKQGQISRLENGEFTPGADFLYALSKKLKVSIDYF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 F+ D SE + T + +Y +++ VKV + Sbjct: 63 FNEQIVEEIDELSEFKKLAQTFITNRNYESLKYIYELESVKVHR 106 >gi|255024118|ref|ZP_05296104.1| transcription regulator, putative [Listeria monocytogenes FSL J1-208] Length = 110 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|239827077|ref|YP_002949701.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239807370|gb|ACS24435.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 108 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG+RIR R +S +L + LGI+ ++ + E G + S +Q E + P+ Sbjct: 3 INKKVGERIREVRKKYNLSMMQLADELGISQPRLSRIENGDQEIPISLIQKFCERFDIPL 62 Query: 71 SFFF 74 S FF Sbjct: 63 SSFF 66 >gi|326201808|ref|ZP_08191679.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325988408|gb|EGD49233.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 182 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ RI+ R++ G ++E++ E LG+ Q + YE + + S L ++E+ + I+ Sbjct: 7 DIAVRIKGLRLLAGSTEEEVAEQLGVMLAQYKSYENAEDDIPVSLLYELAEIYKVNITEI 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + DI + +GL++ R+ Sbjct: 67 LTGTSPKLHDICH--------VKKGEGLKVERF 91 >gi|256843791|ref|ZP_05549278.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|262047764|ref|ZP_06020716.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|293381647|ref|ZP_06627629.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312977082|ref|ZP_07788831.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] gi|256613696|gb|EEU18898.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|260571969|gb|EEX28537.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|290921789|gb|EFD98809.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310896410|gb|EFQ45475.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] Length = 270 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R LG++Q+++ + IT K EKG NR+ L I + +S+ Sbjct: 1 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY 60 Query: 73 FFD 75 F D Sbjct: 61 FVD 63 >gi|238912424|ref|ZP_04656261.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 90 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI +V +YE GV+R + + VL+ P +F Sbjct: 9 RLKTARLHAHLTQEKLGVLAGIEEETARSRVSQYESGVHRPTFEMMCAFARVLDVPECYF 68 Query: 74 FDVS 77 + V+ Sbjct: 69 YVVN 72 >gi|328948101|ref|YP_004365438.1| hypothetical protein Tresu_1233 [Treponema succinifaciens DSM 2489] gi|328448425|gb|AEB14141.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 114 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +G IR R+ L M+QE+L E GIT + K E G ++ E+LE P F Sbjct: 11 LGANIRCYRIKLKMTQEELAEKAGITSVGISKIETGKTWPKKETIEKFLEILEVKPFQLF 70 >gi|313634226|gb|EFS00863.1| DNA-binding protein [Listeria seeligeri FSL N1-067] Length = 104 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|229543521|ref|ZP_04432581.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229327941|gb|EEN93616.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 145 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N+G+ + R+ +GMSQ +L E LG+ QV + E+ N + ++ I +V+E+ Sbjct: 76 NIGRTLIAYRIYIGMSQAELTEKLGVAPSQVSRDER--NEYYGATIERIRDVMEA 128 >gi|311067372|ref|YP_003972295.1| putative HTH-type transcriptional regulator [Bacillus atrophaeus 1942] gi|310867889|gb|ADP31364.1| putative HTH-type transcriptional regulator [Bacillus atrophaeus 1942] Length = 66 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 K +R R G SQEKLGE +G+T Q V EKG Sbjct: 6 KELRAR---FGYSQEKLGEAVGVTRQTVAAIEKG 36 >gi|91223886|ref|ZP_01259150.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269966489|ref|ZP_06180573.1| putative transcriptional regulator [Vibrio alginolyticus 40B] gi|91191378|gb|EAS77643.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269828946|gb|EEZ83196.1| putative transcriptional regulator [Vibrio alginolyticus 40B] Length = 185 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I R G+SQ +L E GIT + E G S LQ I V +S FF Sbjct: 6 IGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFF 65 >gi|307324538|ref|ZP_07603745.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889782|gb|EFN20761.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 410 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 27/43 (62%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 D++VGKR+ R I ++QE+L + G++ +++ E+G R Sbjct: 2 TDLSVGKRLARLRDIRDLTQEQLADRAGVSVDTIRRLEQGTQR 44 >gi|219871029|ref|YP_002475404.1| transcriptional regulator/helix-turn-helix domain-containing protein [Haemophilus parasuis SH0165] gi|219691233|gb|ACL32456.1| transcriptional regulator/helix-turn-helix domain-containing protein [Haemophilus parasuis SH0165] Length = 129 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 19/130 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV ++IR R SQE++ E + ++ + E+G ++ +L+ I+++L+ I Sbjct: 1 MNVHEKIRKLRETKLWSQEQMAEKMNMSLNGYARIERGETKLHLDKLEQIAQILDVDIVN 60 Query: 73 FFDVSP---TVCSDISS--------EENNVMDFISTPDGLQLN-RYFIQI-----DDVKV 115 +SP VC I + NN I + L+L+ Y QI D+++V Sbjct: 61 L--ISPDDRNVCLQIGDNIHLSPVYQGNNDQSLIIEIEKLKLSLSYSQQIIEQKDDEIRV 118 Query: 116 RQKIIELVRS 125 + +I+L++S Sbjct: 119 LKDMIDLLKS 128 >gi|163813865|ref|ZP_02205259.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] gi|158450735|gb|EDP27730.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] Length = 351 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ LG++ V K+EKG S L ++ +L+ ++ Sbjct: 1 MRIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNE 60 Query: 73 FF 74 F Sbjct: 61 LF 62 >gi|295108966|emb|CBL22919.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 351 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ LG++ V K+EKG S L ++ +L+ ++ Sbjct: 1 MRIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNE 60 Query: 73 FF 74 F Sbjct: 61 LF 62 >gi|239814989|ref|YP_002943899.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801566|gb|ACS18633.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R RM MS L + G++ + + E+G+ L+ +++ L P+S FF Sbjct: 6 IGAQVRALRMAAEMSAGSLAKASGVSASMLSRIERGLVSPSVETLERVAQGLHVPVSRFF 65 >gi|224024015|ref|ZP_03642381.1| hypothetical protein BACCOPRO_00732 [Bacteroides coprophilus DSM 18228] gi|224017237|gb|EEF75249.1| hypothetical protein BACCOPRO_00732 [Bacteroides coprophilus DSM 18228] Length = 106 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 25/37 (67%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 N+G IR R+ G++QE+LGE +G+ Q+ K E+G Sbjct: 7 NIGLMIRNERLRKGLTQEELGERVGVGKAQISKIERG 43 >gi|110678190|ref|YP_681197.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] gi|109454306|gb|ABG30511.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] Length = 192 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +VG R++ R GMSQ +L E G+ Q+ E + + L+ I L +S Sbjct: 3 DFDVGARLKAIRQQNGMSQRQLAEASGVPHGQISMIETNKSSPSVASLRKILGGLSLGMS 62 Query: 72 FFFDVSPTVCSD 83 FF+ P V D Sbjct: 63 EFFE--PDVVED 72 >gi|196037154|ref|ZP_03104469.1| transcriptional regulator [Bacillus cereus W] gi|195990258|gb|EDX54311.1| transcriptional regulator [Bacillus cereus W] Length = 116 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++QE+LG +G++ + +EKG G L+ I++ + Sbjct: 2 IGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFNVTTDYLL 61 Query: 75 DVSPTVCSDISSEENNVM 92 S ++S EEN ++ Sbjct: 62 GRSED--PELSEEENKIV 77 >gi|282874480|ref|ZP_06283366.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|281296736|gb|EFA89244.1| DNA-binding protein [Staphylococcus epidermidis SK135] Length = 104 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R +L M+QE L + L T Q V K+EK + + L +S++ ++ Sbjct: 3 LGEQIKKHRKLLNMTQEDLCQKLNTTRQTVSKWEKNMIEPDINTLLKLSDIFGISLNELI 62 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 ++ S+E NV +F+S Sbjct: 63 TGEKEFINN--SKEMNVWEFLS 82 >gi|168183950|ref|ZP_02618614.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672974|gb|EDT84935.1| transcriptional regulator [Clostridium botulinum Bf] Length = 92 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R+R R ++QE+LG+ L ++ Q V YEKG N L I+ + + + Sbjct: 3 GDRLRELREEKQLTQEELGKLLNVSRQAVSSYEKGENEPTIDALVKIANIFNVSLDYLL 61 >gi|153951325|ref|YP_001397968.1| helix-turn-helix domain-containing protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938771|gb|ABS43512.1| helix-turn-helix domain protein [Campylobacter jejuni subsp. doylei 269.97] Length = 188 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 KI N GKR+RL R L +SQ+++ + LGIT + E+G Sbjct: 84 KIHNAA---CGKRLRLLRTSLNLSQDRIAKILGITVAVYMRIERG 125 >gi|23505482|ref|NP_700411.1| regulatory protein [Salmonella phage ST64B] gi|168822352|ref|ZP_02834352.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|23379229|gb|AAL25916.1| Sb38 [Salmonella phage ST64B] gi|205341260|gb|EDZ28024.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261247208|emb|CBG25032.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994039|gb|ACY88924.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158553|emb|CBW18064.1| predicted bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320086315|emb|CBY96088.1| 26 kDa repressor protein Regulatory protein CI [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|323130316|gb|ADX17746.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988930|gb|AEF07913.1| hypothetical protein STMUK_2020 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 231 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M +L E +G+ + + E G + L +++ L I+ Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIA 60 Query: 72 FFFDVSP---TVC--SDISSEENNVMDF 94 F P TVC SD+ + NV D Sbjct: 61 ELFTSDPKGNTVCKHSDMRKDSANVKDL 88 >gi|59801396|ref|YP_208108.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|239998753|ref|ZP_04718677.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae 35/02] gi|240014330|ref|ZP_04721243.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240016763|ref|ZP_04723303.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|240080961|ref|ZP_04725504.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA19] gi|240112680|ref|ZP_04727170.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae MS11] gi|240115427|ref|ZP_04729489.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID18] gi|240117722|ref|ZP_04731784.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240121893|ref|ZP_04734855.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|240123275|ref|ZP_04736231.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID332] gi|240125529|ref|ZP_04738415.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae SK-92-679] gi|254493540|ref|ZP_05106711.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|260440761|ref|ZP_05794577.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae DGI2] gi|268594599|ref|ZP_06128766.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268597075|ref|ZP_06131242.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268598746|ref|ZP_06132913.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268601105|ref|ZP_06135272.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268603423|ref|ZP_06137590.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268681903|ref|ZP_06148765.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268684119|ref|ZP_06150981.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|291044074|ref|ZP_06569790.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293399253|ref|ZP_06643418.1| phage repressor [Neisseria gonorrhoeae F62] gi|59718291|gb|AAW89696.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|226512580|gb|EEH61925.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|268547988|gb|EEZ43406.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268550863|gb|EEZ45882.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268582877|gb|EEZ47553.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268585236|gb|EEZ49912.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268587554|gb|EEZ52230.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268622187|gb|EEZ54587.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268624403|gb|EEZ56803.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|291012537|gb|EFE04526.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291610667|gb|EFF39777.1| phage repressor [Neisseria gonorrhoeae F62] Length = 126 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 GKR++ R+ LG++Q + E G + + K+E+G NR + +L S++ Sbjct: 8 GKRLKEERIKLGLNQAEAAEKCGFSREMWGKWERGENRPSSEKLFSFSKI 57 >gi|302380010|ref|ZP_07268489.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302312236|gb|EFK94238.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] Length = 174 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE+L + + Q V K+E+G++ + L +SE+L + +S Sbjct: 14 GLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVS 58 >gi|333025931|ref|ZP_08453995.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332745783|gb|EGJ76224.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 107 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+ + RR+ LG+SQ +L E G+T QV + E G L+ ++ L+ ++ Sbjct: 33 DLGQAVHDRRVELGLSQSELAERAGMTQPQVSRMEGGDTVPTLPLLRRLARALDGALNLA 92 Query: 74 FD 75 D Sbjct: 93 ID 94 >gi|268686373|ref|ZP_06153235.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|268626657|gb|EEZ59057.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] Length = 138 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 GKR++ R+ LG++Q + E G + + K+E+G NR + +L S++ Sbjct: 20 GKRLKEERIKLGLNQAEAAEKCGFSREMWGKWERGENRPSSEKLFSFSKI 69 >gi|169830890|ref|YP_001716872.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169637734|gb|ACA59240.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 245 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI R GMSQ+KL E + + K E G L I E + ++ Sbjct: 1 MDIGPRIARFRERAGMSQKKLAELAALDRSHISKIESGDTSPSLEALMRICESMGVTLAE 60 Query: 73 FF--DVSP 78 FF DV P Sbjct: 61 FFGSDVQP 68 >gi|271499443|ref|YP_003332468.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|307129761|ref|YP_003881777.1| hypothetical protein Dda3937_03632 [Dickeya dadantii 3937] gi|270342998|gb|ACZ75763.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] gi|306527290|gb|ADM97220.1| hypothetical protein Dda3937_03632 [Dickeya dadantii 3937] Length = 88 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI ++ +YE G++R + ++VL P +F Sbjct: 5 RLKTARLQANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVPECYF 64 Query: 74 FDV 76 + V Sbjct: 65 YTV 67 >gi|312879205|ref|ZP_07739005.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] gi|310782496|gb|EFQ22894.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] Length = 134 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 33/65 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G RIR R G+ Q++L E +GI+ + + E+G L+ S VL P++ Sbjct: 3 STGSRIREARKARGLEQKELAERMGISAAFLSRIERGERGCSLDLLRRASAVLGCPLAEL 62 Query: 74 FDVSP 78 + +P Sbjct: 63 AEETP 67 >gi|300716279|ref|YP_003741082.1| regulatory protein [Erwinia billingiae Eb661] gi|299062115|emb|CAX59231.1| Regulatory protein [Erwinia billingiae Eb661] Length = 229 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 19/121 (15%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R M+ L +G + + E+GV + LQ +++ L PIS F Sbjct: 4 GERIRQLRKAKKMTLNALAMQVGSDVGNLSRLERGVQGYSDALLQKLADALAVPISALFS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR---YFIQIDDVKVR-------QKIIELVRS 125 S E N D S ++ R Y + + DV +++++++RS Sbjct: 64 ---------SGELKNTGDLYSVSSLTEMGRDDVYRVDVLDVSASAGEGSPAREVVQVIRS 114 Query: 126 I 126 I Sbjct: 115 I 115 >gi|257455466|ref|ZP_05620700.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257447129|gb|EEV22138.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 87 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 33/66 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + GKRIR R G+SQEKL I + K E+G + +++ ISE L+ Sbjct: 13 HPQIVAFGKRIRTIRKQKGISQEKLALLAQIDRSYMGKIERGEFNLTLTKIYQISEALQV 72 Query: 69 PISFFF 74 + F Sbjct: 73 SVVTLF 78 >gi|297587718|ref|ZP_06946362.1| DNA-binding protein [Finegoldia magna ATCC 53516] gi|297574407|gb|EFH93127.1| DNA-binding protein [Finegoldia magna ATCC 53516] Length = 172 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE+L + + Q V K+E+G++ + L +SE+L + +S Sbjct: 14 GLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVS 58 >gi|169334705|ref|ZP_02861898.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] gi|169257443|gb|EDS71409.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] Length = 125 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+GK+I+ R SQ L E + + Q + K E+G+++ L I+ L+ + Sbjct: 8 NLGKQIKKYRKQKKYSQSDLAEKIDKSVQHISKIERGISKASLQTLVDITNALDISMDEL 67 Query: 74 FDVSPTVCSD 83 ++S SD Sbjct: 68 LNMSVKKSSD 77 >gi|84386363|ref|ZP_00989391.1| transcriptional regulator, putative [Vibrio splendidus 12B01] gi|84378787|gb|EAP95642.1| transcriptional regulator, putative [Vibrio splendidus 12B01] Length = 101 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 14/86 (16%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHI 62 I NP+ + R++ R +SQ++LG +GI ++ +YEKG + S L+ + Sbjct: 3 IDNPIPM----RLKEVRKKAKISQKELGVRIGIDESSASARMNQYEKGKHTPDISTLKKM 58 Query: 63 SEVLESPISFFFDVSPTVCSDISSEE 88 + L P+++FF C D SS E Sbjct: 59 GDELGVPLNYFF------CEDESSAE 78 >gi|303235344|ref|ZP_07321962.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302493658|gb|EFL53446.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 174 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+SQE+L + + Q V K+E+G++ + L +SE+L + +S Sbjct: 14 GLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVS 58 >gi|295110793|emb|CBL24746.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 104 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 N+ K + R +SQE+ E +G+T Q V ++E GV+ + L ISE P+ Sbjct: 10 NIAKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFAIPV 66 >gi|255532160|ref|YP_003092532.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345144|gb|ACU04470.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 109 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++ R+ R G++Q+ + + L I+ K E G+ SR+ I+EV + F Sbjct: 4 LGEKFRILRQKKGVNQKAMADLLEISIPAYSKLETGITDPNFSRINQIAEVHNLTLREFL 63 Query: 75 DVSPTVCSD 83 D+ S+ Sbjct: 64 DIGEEGVSE 72 >gi|163813936|ref|ZP_02205330.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] gi|158450806|gb|EDP27801.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] Length = 242 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R G++QE+ E +G++ Q V K+E+ RL I E+L+ + Sbjct: 4 IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVG 60 >gi|154499890|ref|ZP_02037928.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] gi|150271488|gb|EDM98745.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] Length = 451 Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 K++P+ I G I R GM+Q++L LGI+ + V K+E+G Sbjct: 30 KEVPHMDSIRTGSFIASLRREKGMTQKELASLLGISDKAVSKWERG 75 >gi|307292240|ref|ZP_07572104.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496746|gb|EFM66299.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 270 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 VG RIR R L +S EK G+ +G + V +E+G+N L I+E+ Sbjct: 8 VGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEI 59 >gi|302189709|ref|ZP_07266382.1| prophage PSPPH03, Cro/CI family transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length = 290 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS 85 L +SQ+K+ + G+T V Y KG+N + +S +L+ P+ F SP + +I+ Sbjct: 29 LKLSQKKIADEAGMTPAAVNLYFKGINPLNTRFAAVLSRMLQEPVESF---SPRLAKEIA 85 Query: 86 S 86 S Sbjct: 86 S 86 >gi|283782998|ref|YP_003373752.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|283441145|gb|ADB13611.1| DNA-binding protein [Gardnerella vaginalis 409-05] Length = 210 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 13/105 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + Sbjct: 3 LGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDHLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 D ++N +D + L +Y + + + VR+KI Sbjct: 63 D------------KDNAIDLSIIKKPIDLAKYGLN-EKLSVRKKI 94 >gi|253987942|ref|YP_003039298.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779392|emb|CAQ82553.1| similar to transcription regulator and to restriction enzyme contro elements [Photorhabdus asymbiotica] Length = 78 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 33/72 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN + G+R+R R GMSQE + GI + E+G+ + I+ Sbjct: 2 KKPNAIKSLFGQRVRHLRQSSGMSQEAFADKCGIDRTYISGIERGIRNPTLEVINIIASG 61 Query: 66 LESPISFFFDVS 77 L+ ++ FD S Sbjct: 62 LQIELTDLFDFS 73 >gi|28631122|gb|AAO49680.1| Eag0009 [Haemophilus influenzae] gi|301169931|emb|CBW29535.1| unnamed protein product [Haemophilus influenzae 10810] Length = 130 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 18/128 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI---- 70 V +IR+ R I SQE++ E L ++ K E+G + + +LQ I+ V + Sbjct: 3 VHDKIRVMREINQWSQEEMAEKLSMSPNGYAKIERGQSSINLDKLQQIANVFNIDMGELI 62 Query: 71 -----SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--------QIDDVKVRQ 117 S FF V ++++ + + T + +LN + D++K + Sbjct: 63 TCKDRSIFFAVGGDNSYNLTNSHFGTNEVL-TAENEKLNSLLTMKDTLLAQKDDEIKALK 121 Query: 118 KIIELVRS 125 +IIEL++S Sbjct: 122 EIIELLKS 129 >gi|315281473|ref|ZP_07870091.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313614873|gb|EFR88399.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 180 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|303239079|ref|ZP_07325609.1| helix-turn-helix domain protein [Acetivibrio cellulolyticus CD2] gi|302593417|gb|EFL63135.1| helix-turn-helix domain protein [Acetivibrio cellulolyticus CD2] Length = 147 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 15 VGKRI--RLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + KRI ++R + +S+E+ E + +T Q + + EKG+ + LQ ISE P+ Sbjct: 9 LAKRIGAKIRGIRGNLSREEFVEAIDRIVTPQSLYRVEKGLRKASDKVLQKISEKFNKPL 68 Query: 71 SFFFD 75 S+F++ Sbjct: 69 SWFYE 73 >gi|296272112|ref|YP_003654743.1| XRE family transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096287|gb|ADG92237.1| transcriptional regulator, XRE family [Arcobacter nitrofigilis DSM 7299] Length = 197 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + NVGK+I+ R M+ ++L + GI++ + E G + L+ +++VL I+ Sbjct: 4 EFNVGKKIKFLRKEKKMNAKELAKDAGISYGMLSLLESGSTQGSVETLRKVAKVLGVTIA 63 Query: 72 FFFDVSPTVCSDISSEENNV 91 F S SD+++ N+ Sbjct: 64 HLFTNSED--SDLATSPKNL 81 >gi|251779491|ref|ZP_04822411.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083806|gb|EES49696.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 164 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 14/72 (19%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+GK I+ R + G++Q++ G + + ++KYE G + P+S Sbjct: 9 INIGKNIKHYRKLEGLTQKEFGAKIHKSEISIRKYESGKGNI--------------PMST 54 Query: 73 FFDVSPTVCSDI 84 FFD++ + +I Sbjct: 55 FFDIARSFNINI 66 >gi|223983505|ref|ZP_03633690.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] gi|223964500|gb|EEF68827.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] Length = 270 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +N ++++ RR +G SQE+L L ++ Q V K+E G +L +SE+L Sbjct: 1 MNFAQKLQKRRKEVGFSQEQLAFELNVSRQAVSKWESGQGYPEVEKLIQLSELL 54 >gi|328475511|gb|EGF46270.1| transcription regulator [Listeria monocytogenes 220] Length = 180 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|229008902|ref|ZP_04166256.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] gi|228752339|gb|EEM02013.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] Length = 218 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +++GK I+ R +SQ++LGE G++ + V +EKG+ +Q I++ Sbjct: 1 MSIGKNIKKLRDKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGVIQKIAD 52 >gi|270262720|ref|ZP_06190991.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043404|gb|EFA16497.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 185 Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + GKR+ R+ LG+SQ ++ E G+T + E+ S LQ + +V + Sbjct: 4 VSLAPGKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 Query: 71 SFFF 74 S FF Sbjct: 64 SAFF 67 >gi|222530625|ref|YP_002574507.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457472|gb|ACM61734.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 118 Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ R G +QE++ + LGIT +Q+ YE G V L ++ + ++ Sbjct: 9 IGKRLQELRKQRGFTQEQVAKYLGITQEQLSHYENGKREVSVDILLQLARLYGCDYNYLL 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 I+ N D IS D Sbjct: 69 GEEQNTDEQITM--NFRADEISDED 91 Searching..................................................done Results from round 2 >gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040101|gb|ACT56897.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 144 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ Sbjct: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII Sbjct: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 ELVRSIVSSEKKYRTIEEECMVEQ Sbjct: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 >gi|315122130|ref|YP_004062619.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495532|gb|ADR52131.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 145 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 108/139 (77%), Positives = 119/139 (85%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+GNKK PNPVDINVGKRIRLRR ILGMSQEKLG+ LGITFQQVQKYEKGVNRVGASRLQ Sbjct: 1 MIGNKKTPNPVDINVGKRIRLRRTILGMSQEKLGDSLGITFQQVQKYEKGVNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +IS L+ PISFFFD P VCS SEENN+MDF+S+ DGLQLNR+F QI DVKVRQKII Sbjct: 61 NISRALDIPISFFFDDPPEVCSGALSEENNIMDFLSSSDGLQLNRHFTQIKDVKVRQKII 120 Query: 121 ELVRSIVSSEKKYRTIEEE 139 +LV+SIVS EK +EEE Sbjct: 121 DLVKSIVSLEKSTIALEEE 139 >gi|163757744|ref|ZP_02164833.1| dna-binding protein [Hoeflea phototrophica DFL-43] gi|162285246|gb|EDQ35528.1| dna-binding protein [Hoeflea phototrophica DFL-43] Length = 139 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 80/139 (57%), Positives = 106/139 (76%), Gaps = 6/139 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGEALGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P + ++ N V+DF+S+ +GLQLNR FI+I D K Sbjct: 61 NISTILNVPVSFFFEDAPGDPATGQPGMAEANSSNYVVDFLSSSEGLQLNRAFIKIPDPK 120 Query: 115 VRQKIIELVRSIVSSEKKY 133 VR+++++LV+S+ S + Sbjct: 121 VRRRLVDLVKSLASDPETD 139 >gi|241202771|ref|YP_002973867.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856661|gb|ACS54328.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 138 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 81/134 (60%), Positives = 105/134 (78%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDIS-----SEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +IS +L P+SFFF+ +P S+ S N V+DF+S+ +GLQLNR F++I D KV Sbjct: 61 NISNILNVPVSFFFEDAPGEHSNAGGGMETSSSNYVVDFLSSSEGLQLNRAFVKISDPKV 120 Query: 116 RQKIIELVRSIVSS 129 R+K++ELV+++ + Sbjct: 121 RRKVVELVKALAAE 134 >gi|116250159|ref|YP_765997.1| HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254807|emb|CAK05881.1| putative HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 138 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 81/134 (60%), Positives = 105/134 (78%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +IS +L P+SFFF+ +P S +S N V+DF+S+ +GLQLNR F++I D KV Sbjct: 61 NISNILNVPVSFFFEDAPGEHSSAGGGMEASSSNYVVDFLSSSEGLQLNRAFVKISDPKV 120 Query: 116 RQKIIELVRSIVSS 129 R+K++ELV+++ + Sbjct: 121 RRKVVELVKALAAE 134 >gi|227820634|ref|YP_002824604.1| putative transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339633|gb|ACP23851.1| putative transcriptional regulator [Sinorhizobium fredii NGR234] Length = 136 Score = 200 bits (509), Expect = 5e-50, Method: Composition-based stats. Identities = 80/135 (59%), Positives = 105/135 (77%), Gaps = 3/135 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MVENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +IS +L P+SFFF+ +P +E N V+DF+S+ +GLQLNR F++I D KVR+ Sbjct: 61 NISSILNVPVSFFFEDAPGEAGSGMAEAPSSNYVVDFLSSSEGLQLNRAFVKISDPKVRR 120 Query: 118 KIIELVRSIVSSEKK 132 K+++LV+++ + + Sbjct: 121 KLVDLVKALAAEAES 135 >gi|190890041|ref|YP_001976583.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|218510206|ref|ZP_03508084.1| probable transcriptional regulator protein [Rhizobium etli Brasil 5] gi|218670147|ref|ZP_03519818.1| probable transcriptional regulator protein [Rhizobium etli GR56] gi|190695320|gb|ACE89405.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] gi|327188600|gb|EGE55810.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 139 Score = 200 bits (508), Expect = 7e-50, Method: Composition-based stats. Identities = 81/135 (60%), Positives = 105/135 (77%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P S +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISSILNVPVSFFFEDAPGEHSGAIGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVSS 129 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAAE 135 >gi|159184276|ref|NP_353393.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139603|gb|AAK86178.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 139 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 79/135 (58%), Positives = 104/135 (77%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P T +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISGILNVPVSFFFEDAPGDQVGGTSGMAEASSSNYVVDFLSSAEGLQLNRAFVKIADPK 120 Query: 115 VRQKIIELVRSIVSS 129 VR+++++LV+++ + Sbjct: 121 VRRRLVDLVKALAAE 135 >gi|325291795|ref|YP_004277659.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059648|gb|ADY63339.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 140 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 80/135 (59%), Positives = 104/135 (77%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 2 MTENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 61 Query: 61 HISEVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P T +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 62 NISAILNVPVSFFFEDAPGDQAVGTTGMAEASSSNYVVDFLSSAEGLQLNRAFVKIADPK 121 Query: 115 VRQKIIELVRSIVSS 129 VR+++++LV+S+ + Sbjct: 122 VRRRLVDLVKSLAAE 136 >gi|222084698|ref|YP_002543227.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722146|gb|ACM25302.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 139 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 80/135 (59%), Positives = 105/135 (77%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P + +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISSILNVPVSFFFEDAPGDHTTTAGGLAEASSSNYVVDFLSSSEGLQLNRAFVKISDGK 120 Query: 115 VRQKIIELVRSIVSS 129 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAAE 135 >gi|222147356|ref|YP_002548313.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734346|gb|ACM35309.1| transcriptional regulator [Agrobacterium vitis S4] Length = 140 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 105/136 (77%), Gaps = 7/136 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MLENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTV-------CSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +IS +L P+SFFF+ +P ++ N V+DF+S+ +GLQLNR F++I+D Sbjct: 61 NISSILNVPVSFFFEDAPGEQVVAGANGFSEAASSNYVVDFLSSSEGLQLNRAFVKINDP 120 Query: 114 KVRQKIIELVRSIVSS 129 KVR+K+++LV+++ + Sbjct: 121 KVRRKVVDLVKALAAD 136 >gi|153008089|ref|YP_001369304.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559977|gb|ABS13475.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 135 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 4/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDVHVGSRIRLRRNMLGLSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVR 116 IS +L P+SFFF+ +P + E+N V+DF+++ +G+QL R F +I D KVR Sbjct: 61 AISAILNVPVSFFFEDAPGSSNQAGFAEDNEATYVVDFLNSNEGVQLTRAFTKISDPKVR 120 Query: 117 QKIIELVRSIVSS 129 +KII+LV+S+ + Sbjct: 121 RKIIDLVKSLAAD 133 >gi|239833207|ref|ZP_04681536.1| DNA-binding-domin protein [Ochrobactrum intermedium LMG 3301] gi|239825474|gb|EEQ97042.1| DNA-binding-domin protein [Ochrobactrum intermedium LMG 3301] Length = 135 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 4/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDVHVGSRIRLRRNMLGLSQEKLGENLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVR 116 IS +L P+SFFF+ +P + E+N V+DF+++ +G+QL R F +I D KVR Sbjct: 61 AISAILNVPVSFFFEDAPGSSNQAGFAEDNEATYVVDFLNSNEGVQLTRAFTKISDPKVR 120 Query: 117 QKIIELVRSIVSS 129 +KII+LV+S+ + Sbjct: 121 RKIIDLVKSLAAD 133 >gi|254470793|ref|ZP_05084196.1| dna-binding protein [Pseudovibrio sp. JE062] gi|211959935|gb|EEA95132.1| dna-binding protein [Pseudovibrio sp. JE062] Length = 135 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 74/133 (55%), Positives = 103/133 (77%), Gaps = 5/133 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +KK PNP+D++VG R+RLRRM+LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ Sbjct: 3 SKKAPNPIDVHVGSRVRLRRMMLGMSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIA 62 Query: 64 EVLESPISFFFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +L+ P++FFF+ +P + + V+DF+S+ DGL LN+ F++I++ KVR+K Sbjct: 63 TILKVPVAFFFEDAPGTPDETPGVGDNPQTTYVVDFLSSSDGLALNKAFVRIENPKVRKK 122 Query: 119 IIELVRSIVSSEK 131 ++ELV+SI E Sbjct: 123 VVELVKSIAGDED 135 >gi|307942740|ref|ZP_07658085.1| transcriptional regulator protein [Roseibium sp. TrichSKD4] gi|307773536|gb|EFO32752.1| transcriptional regulator protein [Roseibium sp. TrichSKD4] Length = 135 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 74/132 (56%), Positives = 104/132 (78%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +KK PNP+D++VG R+RLRRM+LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ Sbjct: 3 SKKAPNPIDVHVGSRVRLRRMMLGMSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIA 62 Query: 64 EVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +L+ P++FFF+ +P + + + V+DF+S+ +GL LN+ F++IDD KVR++ Sbjct: 63 TILKVPVAFFFEDAPGTPEEAEGFGEAQPTSYVVDFLSSSEGLSLNKAFVRIDDPKVRRR 122 Query: 119 IIELVRSIVSSE 130 I++LVRS+ E Sbjct: 123 IVDLVRSLAGDE 134 >gi|90420537|ref|ZP_01228444.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335265|gb|EAS49018.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 139 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 82/139 (58%), Positives = 106/139 (76%), Gaps = 5/139 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV NKK PNPVDI+VG R+RLRR +LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MVDNKKKPNPVDIHVGSRVRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 ISEV+ P+SFFF+ +PT + S + V+DF+S+ +GLQLNR F++I D KV Sbjct: 61 RISEVMTVPVSFFFEDAPTGMTGSESLQEPSSPDYVVDFLSSSEGLQLNRAFVRISDPKV 120 Query: 116 RQKIIELVRSIVSSEKKYR 134 R+++I+LVR++ S + Sbjct: 121 RRRVIDLVRTLADSGETDS 139 >gi|110636247|ref|YP_676455.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110287231|gb|ABG65290.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 140 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 71/133 (53%), Positives = 99/133 (74%), Gaps = 5/133 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +KK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 3 TNDKKRPNPIDVHVGSRIRLRRNMLGISQEKLGESLGITFQQIQKYEKGTNRVGASRLQA 62 Query: 62 ISEVLESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 I+ +L +P+SFFF+ +P D V DF+S+ +G+QLNR F++I D KVR Sbjct: 63 IASILNAPVSFFFEGAPNEDGDPVAGLAEEGTPYVGDFLSSSEGIQLNRAFVRITDPKVR 122 Query: 117 QKIIELVRSIVSS 129 +++++LV+++ + Sbjct: 123 RRVLDLVKALATD 135 >gi|209547626|ref|YP_002279543.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533382|gb|ACI53317.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 139 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 79/135 (58%), Positives = 102/135 (75%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDV------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISNILNVPVSFFFEDAPGEHAGAGGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVSS 129 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAAE 135 >gi|86356028|ref|YP_467920.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280130|gb|ABC89193.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 139 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 79/135 (58%), Positives = 102/135 (75%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDV------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISSILNVPVSFFFEDAPGEHAGAAGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVSS 129 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAAE 135 >gi|15964163|ref|NP_384516.1| DNA-binding protein [Sinorhizobium meliloti 1021] gi|150395273|ref|YP_001325740.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|307301308|ref|ZP_07581070.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307317979|ref|ZP_07597416.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|160358932|sp|A6U5H5|Y045_SINMW RecName: Full=Uncharacterized HTH-type transcriptional regulator Smed_0045 gi|160358955|sp|P0C5S2|Y410_RHIME RecName: Full=Uncharacterized HTH-type transcriptional regulator R00410 gi|2564960|gb|AAB81868.1| DNA-binding protein [Sinorhizobium medicae WSM419] gi|15073339|emb|CAC41847.1| Transcription regulator [Sinorhizobium meliloti 1021] gi|150026788|gb|ABR58905.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] gi|306896381|gb|EFN27130.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903764|gb|EFN34351.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 139 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 79/138 (57%), Positives = 106/138 (76%), Gaps = 6/138 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS++L P+SFFF+ +P +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISQILNVPVSFFFEDAPGDGGGTGPGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVSSEKK 132 VR+K+++LV+++ + + Sbjct: 121 VRRKLVDLVKALAAEAES 138 >gi|17988254|ref|NP_540888.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23503007|ref|NP_699134.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|62290996|ref|YP_222789.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82700905|ref|YP_415479.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|148558969|ref|YP_001259953.1| Cro/CI family transcriptional regulator [Brucella ovis ATCC 25840] gi|161620067|ref|YP_001593954.1| hypothetical protein BCAN_A2201 [Brucella canis ATCC 23365] gi|163844172|ref|YP_001628577.1| hypothetical protein BSUIS_A1996 [Brucella suis ATCC 23445] gi|189025208|ref|YP_001935976.1| Helix-turn-helix motif [Brucella abortus S19] gi|225626524|ref|ZP_03784563.1| DNA-binding domain protein [Brucella ceti str. Cudo] gi|225853584|ref|YP_002733817.1| XRE family transcriptional regulator [Brucella melitensis ATCC 23457] gi|237816498|ref|ZP_04595491.1| DNA-binding protein [Brucella abortus str. 2308 A] gi|254690290|ref|ZP_05153544.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 6 str. 870] gi|254694778|ref|ZP_05156606.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 3 str. Tulya] gi|254696406|ref|ZP_05158234.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700788|ref|ZP_05162616.1| transcriptional regulator, XRE family protein [Brucella suis bv. 5 str. 513] gi|254705157|ref|ZP_05166985.1| transcriptional regulator, XRE family protein [Brucella suis bv. 3 str. 686] gi|254707325|ref|ZP_05169153.1| transcriptional regulator, XRE family protein [Brucella pinnipedialis M163/99/10] gi|254709133|ref|ZP_05170944.1| transcriptional regulator, XRE family protein [Brucella pinnipedialis B2/94] gi|254713442|ref|ZP_05175253.1| transcriptional regulator, XRE family protein [Brucella ceti M644/93/1] gi|254716202|ref|ZP_05178013.1| transcriptional regulator, XRE family protein [Brucella ceti M13/05/1] gi|254718196|ref|ZP_05180007.1| transcriptional regulator, XRE family protein [Brucella sp. 83/13] gi|254731319|ref|ZP_05189897.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 4 str. 292] gi|256030658|ref|ZP_05444272.1| transcriptional regulator, XRE family protein [Brucella pinnipedialis M292/94/1] gi|256045762|ref|ZP_05448640.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060119|ref|ZP_05450301.1| transcriptional regulator, XRE family protein [Brucella neotomae 5K33] gi|256112481|ref|ZP_05453402.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 3 str. Ether] gi|256158660|ref|ZP_05456543.1| transcriptional regulator, XRE family protein [Brucella ceti M490/95/1] gi|256254064|ref|ZP_05459600.1| transcriptional regulator, XRE family protein [Brucella ceti B1/94] gi|256258543|ref|ZP_05464079.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 9 str. C68] gi|256262932|ref|ZP_05465464.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|256370554|ref|YP_003108065.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260169562|ref|ZP_05756373.1| transcriptional regulator, Cro/CI family protein [Brucella sp. F5/99] gi|260546259|ref|ZP_05821999.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260563058|ref|ZP_05833544.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260567374|ref|ZP_05837844.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|260755830|ref|ZP_05868178.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759053|ref|ZP_05871401.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760778|ref|ZP_05873121.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884855|ref|ZP_05896469.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261215105|ref|ZP_05929386.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261217976|ref|ZP_05932257.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261221205|ref|ZP_05935486.1| transcriptional regulator [Brucella ceti B1/94] gi|261314807|ref|ZP_05954004.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316633|ref|ZP_05955830.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321174|ref|ZP_05960371.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261324096|ref|ZP_05963293.1| transcriptional regulator [Brucella neotomae 5K33] gi|261751297|ref|ZP_05995006.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755862|ref|ZP_05999571.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261759090|ref|ZP_06002799.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|265983154|ref|ZP_06095889.1| transcriptional regulator [Brucella sp. 83/13] gi|265987705|ref|ZP_06100262.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992179|ref|ZP_06104736.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993917|ref|ZP_06106474.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265997166|ref|ZP_06109723.1| transcriptional regulator [Brucella ceti M490/95/1] gi|294851383|ref|ZP_06792056.1| HTH-type transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297247382|ref|ZP_06931100.1| HTH-type transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306837710|ref|ZP_07470579.1| transcriptional regulator protein [Brucella sp. NF 2653] gi|306842733|ref|ZP_07475375.1| transcriptional regulator protein [Brucella sp. BO2] gi|306843576|ref|ZP_07476177.1| transcriptional regulator protein [Brucella sp. BO1] gi|17984022|gb|AAL53152.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23349047|gb|AAN31049.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] gi|62197128|gb|AAX75428.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1 str. 9-941] gi|82617006|emb|CAJ12115.1| Helix-turn-helix motif [Brucella melitensis biovar Abortus 2308] gi|148370226|gb|ABQ60205.1| transcriptional regulator, Cro/CI family [Brucella ovis ATCC 25840] gi|161336878|gb|ABX63183.1| hypothetical protein BCAN_A2201 [Brucella canis ATCC 23365] gi|163674895|gb|ABY39006.1| hypothetical protein BSUIS_A1996 [Brucella suis ATCC 23445] gi|189020780|gb|ACD73502.1| Helix-turn-helix motif [Brucella abortus S19] gi|225618181|gb|EEH15224.1| DNA-binding domain protein [Brucella ceti str. Cudo] gi|225641949|gb|ACO01863.1| transcriptional regulator, XRE family protein [Brucella melitensis ATCC 23457] gi|237788565|gb|EEP62780.1| DNA-binding protein [Brucella abortus str. 2308 A] gi|256000717|gb|ACU49116.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260096366|gb|EEW80242.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260153074|gb|EEW88166.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260156892|gb|EEW91972.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|260669371|gb|EEX56311.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671210|gb|EEX58031.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675938|gb|EEX62759.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874383|gb|EEX81452.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260916712|gb|EEX83573.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919789|gb|EEX86442.1| transcriptional regulator [Brucella ceti B1/94] gi|260923065|gb|EEX89633.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293864|gb|EEX97360.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261295856|gb|EEX99352.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300076|gb|EEY03573.1| transcriptional regulator [Brucella neotomae 5K33] gi|261303833|gb|EEY07330.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261739074|gb|EEY27070.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|261741050|gb|EEY28976.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261745615|gb|EEY33541.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262551634|gb|EEZ07624.1| transcriptional regulator [Brucella ceti M490/95/1] gi|262764898|gb|EEZ10819.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003245|gb|EEZ15538.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092806|gb|EEZ16981.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264659902|gb|EEZ30163.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264661746|gb|EEZ32007.1| transcriptional regulator [Brucella sp. 83/13] gi|294819972|gb|EFG36971.1| HTH-type transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297174551|gb|EFH33898.1| HTH-type transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306276267|gb|EFM57967.1| transcriptional regulator protein [Brucella sp. BO1] gi|306287077|gb|EFM58582.1| transcriptional regulator protein [Brucella sp. BO2] gi|306407268|gb|EFM63478.1| transcriptional regulator protein [Brucella sp. NF 2653] gi|326410157|gb|ADZ67222.1| Helix-turn-helix motif protein [Brucella melitensis M28] gi|326539875|gb|ADZ88090.1| transcriptional regulator, XRE family protein [Brucella melitensis M5-90] Length = 137 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 77/137 (56%), Positives = 102/137 (74%), Gaps = 6/137 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDMHVGSRIRLRRNMLGLSQEKLGENLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 IS +L P+SFFF+ +P S +E V+DF+++ +G+QL R F +I D K Sbjct: 61 AISSILNVPVSFFFEDAPGSGSSGGDGFAEDNEATYVVDFLNSNEGVQLTRAFTKISDPK 120 Query: 115 VRQKIIELVRSIVSSEK 131 VR+KII+LV+S+ + + Sbjct: 121 VRRKIIDLVKSLAADAE 137 >gi|304393079|ref|ZP_07375008.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303294844|gb|EFL89215.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 150 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 68/134 (50%), Positives = 97/134 (72%), Gaps = 6/134 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK PNP+DI+VG R+RLRR + GMSQEKLG+ LGITFQQ+QKYEKG NR+GASR+Q Sbjct: 1 MAEKKTPNPIDIHVGSRVRLRRTMQGMSQEKLGDALGITFQQIQKYEKGTNRIGASRMQQ 60 Query: 62 ISEVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 IS L+ P++FFF+ +P +S V+DF+S+P+G+QLNR F++I + Sbjct: 61 ISSALDVPVAFFFEDAPADVINNATGMHETSATTYVVDFLSSPEGIQLNRAFVRITSPAI 120 Query: 116 RQKIIELVRSIVSS 129 R+++IE+VR++ Sbjct: 121 RRRVIEMVRTLADE 134 >gi|182678047|ref|YP_001832193.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633930|gb|ACB94704.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 155 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 71/139 (51%), Positives = 98/139 (70%), Gaps = 11/139 (7%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK+PNP+D +VG ++R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NR+GASRLQ IS Sbjct: 2 KKVPNPIDCHVGGKVRMRRVMLGMSQEKLGEALGLTFQQVQKYEKGTNRIGASRLQQISR 61 Query: 65 VLESPISFFFDVSPTVCS-----------DISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +L+ P +FFFD +P + + V +F++TP+GL LN F +I D Sbjct: 62 ILDVPPAFFFDGAPAFEGMPRPNAPVIPTGDEASLSYVTEFLATPEGLHLNLAFRRIKDP 121 Query: 114 KVRQKIIELVRSIVSSEKK 132 KVR++I+ELV +I E++ Sbjct: 122 KVRKRIVELVMAIAGDEEQ 140 >gi|260461987|ref|ZP_05810232.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259032234|gb|EEW33500.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 139 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 76/134 (56%), Positives = 100/134 (74%), Gaps = 6/134 (4%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ I Sbjct: 4 ENKKKPNPIDIHVGSRIRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRLQAI 63 Query: 63 SEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + +L P++FFF+ +P S + ++F +P+GLQLNR F++I DVKVR Sbjct: 64 ASILGVPVAFFFEDAPGQESSANRGFAEDASMAFAVEFCGSPEGLQLNRAFVKIADVKVR 123 Query: 117 QKIIELVRSIVSSE 130 ++II+LV+S+ + + Sbjct: 124 RRIIDLVKSLAADD 137 >gi|13474622|ref|NP_106191.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025376|dbj|BAB51977.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 139 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 74/134 (55%), Positives = 100/134 (74%), Gaps = 6/134 (4%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 NKK PNP+DI+VG R+RLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ I Sbjct: 4 ENKKKPNPIDIHVGSRVRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRLQAI 63 Query: 63 SEVLESPISFFFDVSPTVCSDIS------SEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + +L P++FFF+ +P + + ++F +P+GLQLNR F++I DVKVR Sbjct: 64 ASILGVPVAFFFEDAPGQEAAPGRGFSEDASMAFAVEFCGSPEGLQLNRAFVKIADVKVR 123 Query: 117 QKIIELVRSIVSSE 130 ++II+LV+S+ + + Sbjct: 124 RRIIDLVKSLAADD 137 >gi|298293906|ref|YP_003695845.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296930417|gb|ADH91226.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 135 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 72/131 (54%), Positives = 97/131 (74%), Gaps = 5/131 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK PNP+D +VG R+R+RRM++GMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ+IS Sbjct: 2 TKKSPNPIDKHVGSRVRMRRMMIGMSQEKLGENLGITFQQIQKYEKGTNRIGASRLQNIS 61 Query: 64 EVLESPISFFFDVSPTVCSDIS-----SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 VL P+SFFF+ +P V + + V DF++T +GL L R F++I D KVR++ Sbjct: 62 NVLGVPVSFFFEGAPNVGIANTGFAEDASPAYVSDFLATTEGLALTRAFLKIADSKVRRR 121 Query: 119 IIELVRSIVSS 129 I++LV ++ S Sbjct: 122 IVDLVEALASE 132 >gi|319779776|ref|YP_004139252.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165664|gb|ADV09202.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 139 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 74/135 (54%), Positives = 98/135 (72%), Gaps = 6/135 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ I+ Sbjct: 5 NKKKPNPIDIHVGSRIRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRLQAIA 64 Query: 64 EVLESPISFFFDVSPTVCSDIS------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +L P++FFF+ +P + ++F +P+GLQLNR F++I D KVR+ Sbjct: 65 SILGVPVAFFFEDAPGQEPVAGRGFAEDASMAFAVEFCGSPEGLQLNRAFVKIADAKVRR 124 Query: 118 KIIELVRSIVSSEKK 132 +II+LV+S+ + + Sbjct: 125 RIIDLVKSLSADDPD 139 >gi|158421637|ref|YP_001522929.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158328526|dbj|BAF86011.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 150 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 73/133 (54%), Positives = 96/133 (72%), Gaps = 7/133 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D +VG R+R+RRM++GMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ IS Sbjct: 3 KKAPNPIDKHVGSRVRMRRMMVGMSQEKLGEHLGITFQQIQKYEKGTNRIGASRLQQISI 62 Query: 65 VLESPISFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 VL P++FFF+ +P+ + E V DF++T DGL L R F++I D KVR+ Sbjct: 63 VLSVPVAFFFEGAPSANPEADGEGFAEGHSPAYVSDFLATSDGLALTRNFMRISDAKVRR 122 Query: 118 KIIELVRSIVSSE 130 +I++LV +I E Sbjct: 123 RIVDLVSAIAGEE 135 >gi|209883668|ref|YP_002287525.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] gi|209871864|gb|ACI91660.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] Length = 148 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 64/134 (47%), Positives = 93/134 (69%), Gaps = 5/134 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V + K PNPVD VG R+R+RR++LG+SQEKLG+ LG+TFQQ+QKYEKG NR+GASRL Sbjct: 12 VMSAKTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQ 71 Query: 62 ISEVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 I+++L+ P+SF F+ P+ + V DF++T +GL L R F +I D K+R Sbjct: 72 IADILQVPVSFLFEGGPSSNVILDGLGEAPSPAYVSDFLATSEGLALTRAFTRITDAKLR 131 Query: 117 QKIIELVRSIVSSE 130 + I++LV I +++ Sbjct: 132 RSIVDLVEQIANTQ 145 >gi|299133379|ref|ZP_07026574.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593516|gb|EFI53716.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 136 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 64/132 (48%), Positives = 93/132 (70%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LG+SQEKLG+ LG+TFQQ+QKYEKG NR+GASRL I+ Sbjct: 2 SAKTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIA 61 Query: 64 EVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++L+ P+SF F+ PT + + + V DF++T +GL L R F +I D K+R+ Sbjct: 62 DILQVPVSFLFEGGPTSNTSVEGLGEAPSPAYVSDFLATSEGLALTRAFTKITDAKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I ++ Sbjct: 122 IVDLVEQIAGTQ 133 >gi|154245759|ref|YP_001416717.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159844|gb|ABS67060.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 137 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 73/132 (55%), Positives = 95/132 (71%), Gaps = 5/132 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D +VG R+R+RRM++ MSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ IS Sbjct: 3 KKAPNPIDKHVGSRVRMRRMMVSMSQEKLGEHLGITFQQIQKYEKGTNRIGASRLQQIST 62 Query: 65 VLESPISFFFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 VL P++FFF+ +PTV + V DF++T DGL L R F++I D KVR++I Sbjct: 63 VLGVPVAFFFEGAPTVGPEGEGFSEDQSPAYVSDFLATSDGLTLTRNFMRITDPKVRRRI 122 Query: 120 IELVRSIVSSEK 131 +ELV +I + Sbjct: 123 VELVIAIAGEAE 134 >gi|49473876|ref|YP_031918.1| transcriptional regulator [Bartonella quintana str. Toulouse] gi|49239379|emb|CAF25712.1| Transcriptional regulator [Bartonella quintana str. Toulouse] Length = 137 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 96/132 (72%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETKKNPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + + +N+ MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIDSQHVEGFAESDNSFMDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|92115659|ref|YP_575388.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91798553|gb|ABE60928.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis X14] Length = 139 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 95/137 (69%), Gaps = 6/137 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSDISS------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++L+ P+SF F+ SP ++ V DF++T +GL L R F +I D K+R+ Sbjct: 62 DILQVPVSFLFEGSPGTGIAVAGGLSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRR 121 Query: 118 KIIELVRSIVSSEKKYR 134 I++LV I + E R Sbjct: 122 SIVDLVEQIAAREPPDR 138 >gi|86747721|ref|YP_484217.1| XRE family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570749|gb|ABD05306.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris HaA2] Length = 139 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 72/137 (52%), Positives = 93/137 (67%), Gaps = 6/137 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSDISS------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 EVL+ P+SF F+ P+ S + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EVLQVPVSFLFEGGPSGGLANGSGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRR 121 Query: 118 KIIELVRSIVSSEKKYR 134 I++LV I + E Sbjct: 122 SIVDLVEQIAAREPNES 138 >gi|163867517|ref|YP_001608716.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161017163|emb|CAK00721.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 139 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 97/132 (73%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + ++N MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGLTSQQVEGFAESDHNFMDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|217979023|ref|YP_002363170.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217504399|gb|ACK51808.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 166 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 72/143 (50%), Positives = 98/143 (68%), Gaps = 12/143 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KKIPNP+D +VG R+R+RR+ILGMSQEKLGE LG+TFQQVQKYEKG NR+GASRLQ Sbjct: 8 MEKAKKIPNPIDRHVGSRVRMRRVILGMSQEKLGEALGLTFQQVQKYEKGANRIGASRLQ 67 Query: 61 HISEVLESPISFFFDVSPTVCSDIS------------SEENNVMDFISTPDGLQLNRYFI 108 IS L+ P +FFF+ +P+ + + + + V DF+ST +GL LN F Sbjct: 68 QISRTLDVPPAFFFEGAPSFEASATGGSPALGGVAEEANSSYVADFLSTAEGLHLNMAFA 127 Query: 109 QIDDVKVRQKIIELVRSIVSSEK 131 +I D KVR++II+L+ ++ + Sbjct: 128 RIHDPKVRKRIIDLISALAGDDS 150 >gi|319408017|emb|CBI81671.1| transcriptional regulator [Bartonella schoenbuchensis R1] Length = 136 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 97/132 (73%), Gaps = 1/132 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+D+ VG RIRLRR +LG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTETRKKPDPIDVYVGTRIRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVC-SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+E+++ P+S+FFD T + E+N MDF S+ +G+QL R F I D KVR+KI Sbjct: 61 AIAEIMDVPVSYFFDKGITQSVEGFAESESNFMDFCSSSEGIQLMRAFTNILDAKVRRKI 120 Query: 120 IELVRSIVSSEK 131 I+L +++ ++ Sbjct: 121 IDLAKALSEEDQ 132 >gi|39933520|ref|NP_945796.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192288878|ref|YP_001989483.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39647366|emb|CAE25887.1| possible transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] gi|192282627|gb|ACE99007.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 139 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 70/133 (52%), Positives = 93/133 (69%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q I+ Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIA 61 Query: 64 EVLESPISFFFDVSPTV------CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 EVL+ P+SF F+ P+ + + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EVLQVPVSFLFEGGPSGGLANGNGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I++LV I + E Sbjct: 122 SIVDLVERIAARE 134 >gi|49475033|ref|YP_033074.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49237838|emb|CAF27033.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 138 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 71/133 (53%), Positives = 96/133 (72%), Gaps = 2/133 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+D+ VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETRKKPDPIDVYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD V + +N+ MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGVGTQQVEGFAESDNDFMDFCSSSEGIQLMRAFTNISDSKVRRK 120 Query: 119 IIELVRSIVSSEK 131 II+L +++ E Sbjct: 121 IIDLAKALSEEED 133 >gi|323138533|ref|ZP_08073601.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] gi|322396167|gb|EFX98700.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] Length = 141 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 69/135 (51%), Positives = 97/135 (71%), Gaps = 8/135 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R++R+++ MSQEKLGE LG+TFQQVQKYEKGVNR+GASRLQ IS+ Sbjct: 2 KKTPDPIDRHVGSRVRMQRILMKMSQEKLGEALGLTFQQVQKYEKGVNRIGASRLQQISK 61 Query: 65 VLESPISFFFDVSPTVCSDI--------SSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 L P SFFF+ +PT+ + S V+DF+ST +G+ LNR F +I D KVR Sbjct: 62 TLNVPPSFFFEGAPTLNGAVDGAGGFAEESSSQYVVDFLSTAEGMHLNRAFARIKDPKVR 121 Query: 117 QKIIELVRSIVSSEK 131 +++++LV ++ E Sbjct: 122 KRVLDLVTTLADQED 136 >gi|146337220|ref|YP_001202268.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190026|emb|CAL74018.1| conserved hypothetical protein; putative transcriptional regulatory protein HTH type [Bradyrhizobium sp. ORS278] Length = 140 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQ+QKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL+ P+SF F+ P+ ++ + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EVLQVPVSFLFEGVPSGGTNGEAFGEGASPAYVSDFLATSEGLALTRAFTRIHDSKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I E Sbjct: 122 IVDLVEQIADRE 133 >gi|316931572|ref|YP_004106554.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599286|gb|ADU41821.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 139 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 92/132 (69%), Gaps = 6/132 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q I+E Sbjct: 3 TKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIAE 62 Query: 65 VLESPISFFFDVSPTVCSDISS------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 VL+ P+SF F+ P+ S + V DF++T +GL L R F +I D K+R+ Sbjct: 63 VLQVPVSFLFEGGPSGGLANGSGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRRS 122 Query: 119 IIELVRSIVSSE 130 I++LV I + E Sbjct: 123 IVDLVERIAARE 134 >gi|319405105|emb|CBI78709.1| transcriptional regulator [Bartonella sp. AR 15-3] Length = 137 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 72/132 (54%), Positives = 97/132 (73%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTKTRKKPDPIDIYVGARIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + S + +NN +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIAIQSIDGFTESDNNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|240849887|ref|YP_002971275.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240267010|gb|ACS50598.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 137 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 69/132 (52%), Positives = 97/132 (73%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + ++N +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGITSQQVEGFAESDHNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|27375901|ref|NP_767430.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349039|dbj|BAC46055.1| bll0790 [Bradyrhizobium japonicum USDA 110] Length = 137 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 67/130 (51%), Positives = 93/130 (71%), Gaps = 5/130 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQ+QKYEKG NRVGASR+Q I+E+ Sbjct: 3 KAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIAEI 62 Query: 66 LESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+SF F+ P+ + + + V DF++T +GL L + F +I D K+R+ I+ Sbjct: 63 LQVPVSFLFEGGPSGVAGPNGFAEGASPSYVSDFLATSEGLALTKAFTRITDAKMRRSIV 122 Query: 121 ELVRSIVSSE 130 +LV I + E Sbjct: 123 DLVEQIAARE 132 >gi|75674218|ref|YP_316639.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419088|gb|ABA03287.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 139 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 71/137 (51%), Positives = 95/137 (69%), Gaps = 6/137 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ SP T + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGSPGTGVVRTGGMSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRR 121 Query: 118 KIIELVRSIVSSEKKYR 134 I+++V I + E + Sbjct: 122 SIVDMVEQIAAREPSDQ 138 >gi|319898343|ref|YP_004158436.1| transcriptional regulator [Bartonella clarridgeiae 73] gi|319402307|emb|CBI75846.1| transcriptional regulator [Bartonella clarridgeiae 73] Length = 137 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 95/132 (71%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + +NN M+F S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIGIQSVEGFEESDNNFMNFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|319406551|emb|CBI80193.1| transcriptional regulator [Bartonella sp. 1-1C] Length = 137 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 72/136 (52%), Positives = 97/136 (71%), Gaps = 2/136 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTKTRKKPDPMDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD +S + +NN +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGISIQSLEGFTESDNNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSEKKYR 134 II+L +++ + Sbjct: 121 IIDLAKALSEEDHNDE 136 >gi|319403635|emb|CBI77220.1| transcriptional regulator [Bartonella rochalimae ATCC BAA-1498] Length = 137 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 71/136 (52%), Positives = 96/136 (70%), Gaps = 2/136 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTKTRKKPDPMDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + + +NN +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIGIQSLEGFTESDNNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSEKKYR 134 II+L +++ + Sbjct: 121 IIDLAKALSEEDHNDE 136 >gi|121602273|ref|YP_989497.1| DNA-binding protein [Bartonella bacilliformis KC583] gi|120614450|gb|ABM45051.1| DNA-binding protein [Bartonella bacilliformis KC583] Length = 137 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 70/133 (52%), Positives = 98/133 (73%), Gaps = 2/133 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR +LG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + ++N MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGINNQPEESFAESDSNFMDFCSSNEGIQLMRAFTNILDAKVRRK 120 Query: 119 IIELVRSIVSSEK 131 II+L +++ ++ Sbjct: 121 IIDLAKALSEEDQ 133 >gi|91974719|ref|YP_567378.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681175|gb|ABE37477.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] Length = 139 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 70/133 (52%), Positives = 92/133 (69%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ P + + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGGPSGGLANANGFSEAPSPSYVSDFLATSEGLALTRAFTKISDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I++LV I + E Sbjct: 122 SIVDLVEQIAARE 134 >gi|148251675|ref|YP_001236260.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146403848|gb|ABQ32354.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 138 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 70/131 (53%), Positives = 94/131 (71%), Gaps = 4/131 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQ+QKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 EVL+ P+SF F+ P+ ++ + V DF++T +GL L R F +I D K+R+ I Sbjct: 62 EVLQIPVSFLFEGVPSGSTNGEPFDGASPAYVSDFLATSEGLALTRAFTRIHDSKLRRSI 121 Query: 120 IELVRSIVSSE 130 ++LV I E Sbjct: 122 VDLVEQIADRE 132 >gi|296445773|ref|ZP_06887726.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] gi|296256753|gb|EFH03827.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] Length = 145 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 69/135 (51%), Positives = 96/135 (71%), Gaps = 5/135 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R++R++L MSQEKLGE LG+TFQQVQKYEKG NR+GASRLQ IS+ Sbjct: 2 KKAPDPIDRHVGSRVRMQRVLLKMSQEKLGEALGLTFQQVQKYEKGTNRIGASRLQQISK 61 Query: 65 VLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L P SFFFD +P+V + S V++F+ST +GL LNR F +I D KVR+++ Sbjct: 62 TLNVPPSFFFDGAPSVGAPGDGFAEESSSQYVVEFLSTAEGLHLNRAFARIKDPKVRKRV 121 Query: 120 IELVRSIVSSEKKYR 134 I+L+ ++ + Sbjct: 122 IDLISTLADQSEDGV 136 >gi|85714180|ref|ZP_01045169.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85699306|gb|EAQ37174.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 139 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 70/137 (51%), Positives = 94/137 (68%), Gaps = 6/137 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCS------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ SP + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGSPGTGVSRIDGLSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRR 121 Query: 118 KIIELVRSIVSSEKKYR 134 I+++V I + E + Sbjct: 122 SIVDMVEQIAAREPSDQ 138 >gi|300024991|ref|YP_003757602.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526812|gb|ADJ25281.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 154 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 70/140 (50%), Positives = 97/140 (69%), Gaps = 9/140 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + + NP+D++VG R+RLRRM+LGMSQEKLGE LG+TFQQVQKYEKGVNR+GASRL Sbjct: 15 VARGSRRANPMDVHVGSRVRLRRMLLGMSQEKLGEHLGLTFQQVQKYEKGVNRIGASRLF 74 Query: 61 HISEVLESPISFFFDVSPTVCSDIS---------SEENNVMDFISTPDGLQLNRYFIQID 111 +++VL P+ FF+D +P+ E+ V+DF+ T +GL+LN+ F +I Sbjct: 75 DLAKVLGVPVQFFYDEAPSGVQTTGNVIAGFAEQPGESYVVDFLGTREGLELNKAFARIS 134 Query: 112 DVKVRQKIIELVRSIVSSEK 131 D KVR+ I++LVRS+ E Sbjct: 135 DPKVRRSIVDLVRSLAGEES 154 >gi|154254053|ref|YP_001414877.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154158003|gb|ABS65220.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 147 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 66/137 (48%), Positives = 92/137 (67%), Gaps = 5/137 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K+PNP+D++VG R+R+RRM++GMSQEKLGE LG+TFQQVQKYEKG NR+GASRL I Sbjct: 2 TRKLPNPIDVHVGGRVRMRRMLIGMSQEKLGESLGLTFQQVQKYEKGSNRIGASRLYQIG 61 Query: 64 EVLESPISFFFDVSPTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 VL PI +FF+ D + MD +ST +G+QLN F I D K+R++ Sbjct: 62 SVLGVPIEYFFEGVEPGEGNGMEPDAAPSPGFDMDILSTAEGIQLNSAFFAIADPKLRKR 121 Query: 119 IIELVRSIVSSEKKYRT 135 I++LV+++ + T Sbjct: 122 ILDLVKALGGLSDEVET 138 >gi|90421997|ref|YP_530367.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104011|gb|ABD86048.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 138 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 93/132 (70%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 E+L+ P+SF F+ P + ++ V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGGPGGLAKADGFAEAASPAYVSDFLATSEGLALTRAFTRITDSKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I S E Sbjct: 122 IVDLVEQIASRE 133 >gi|115522230|ref|YP_779141.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516177|gb|ABJ04161.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 140 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 69/132 (52%), Positives = 93/132 (70%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 E+L+ P+SF F+ P ++ + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGGPGANIKGEGFSEAASPSYVSDFLATSEGLALTRAFTRIADSKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I + + Sbjct: 122 IVDLVEQIAARD 133 >gi|209966238|ref|YP_002299153.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209959704|gb|ACJ00341.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 149 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 61/126 (48%), Positives = 90/126 (71%), Gaps = 3/126 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL Sbjct: 19 KPNPVDVHVGSRVRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLYDLSRVL 78 Query: 67 ESPISFFFDVSPTVCSDISSEENNV---MDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P+SFFFD P+ + ++E+ D ++ + L+L R + +I + VR++I EL Sbjct: 79 DVPVSFFFDDMPSDDAPRTAEQAQADGEPDPMAKRETLELVRAYYRITEPAVRKRIFELT 138 Query: 124 RSIVSS 129 +++ + Sbjct: 139 KAVAHA 144 >gi|149914411|ref|ZP_01902942.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149811930|gb|EDM71763.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 123 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 77/122 (63%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI+VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MPHPVDIHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +SFFF+ T + E D + + L L R + I + + R+++ +L R + Sbjct: 61 DVDVSFFFEGLETDSGKSEAGEKVPADLLGDKEALDLVRSYYAIPENQ-RRRLFDLARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|144899566|emb|CAM76430.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 161 Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats. Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 12/137 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNP+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+G NRVGASRL +S VL Sbjct: 25 KPNPIDVHVGSRVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGANRVGASRLFDLSRVL 84 Query: 67 ESPISFFFDV--------SPTVCSDISSEENNVM----DFISTPDGLQLNRYFIQIDDVK 114 + P+SFFFD SP + + +++ E D ++ + L+L R + +I D + Sbjct: 85 DVPVSFFFDDMNDELKAQSPALIAGMTALEEPPAHFEHDPLAKRETLELVRAYYRIADPQ 144 Query: 115 VRQKIIELVRSIVSSEK 131 VR+++ EL +++ S+ Sbjct: 145 VRKRVYELAKALADSDS 161 >gi|312115567|ref|YP_004013163.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220696|gb|ADP72064.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 174 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 66/140 (47%), Positives = 101/140 (72%), Gaps = 8/140 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + PNPVDI+VG R+R RRMI+GMSQEKLGE + +TFQQ+QKYEKG NR+GASRL +S++ Sbjct: 27 RKPNPVDIHVGSRVRYRRMIVGMSQEKLGEKMNLTFQQIQKYEKGTNRIGASRLFQLSKI 86 Query: 66 LESPISFFFDV-----SPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 LE P+ +FF+ +P+ S E E ++DF+++ +GL+LN+ F +I D KVR+ Sbjct: 87 LEVPVGYFFEDAFAHSAPSSASHGLHEPEQEGFLLDFLNSREGLELNKAFAKIQDPKVRR 146 Query: 118 KIIELVRSIVSSEKKYRTIE 137 ++I+LVR++ + + + + Sbjct: 147 RVIDLVRALSEEKPEAKESQ 166 >gi|83313567|ref|YP_423831.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948408|dbj|BAE53272.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 164 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 60/134 (44%), Positives = 86/134 (64%), Gaps = 13/134 (9%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVDI+VG R+RLRR ++GMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ Sbjct: 25 PNPVDIHVGARVRLRRTLMGMSQEKLGESIGLTFQQVQKYERGANRIGASRLFDLSRVLD 84 Query: 68 SPISFFFDVSPTVCSDIS-------------SEENNVMDFISTPDGLQLNRYFIQIDDVK 114 P+SFFFD D S + D ++ + L+L R + I D + Sbjct: 85 VPVSFFFDDMAETVQDQSPVAVARGTSGLNEEPASFEADPMTKRETLELVRAYYSITDPQ 144 Query: 115 VRQKIIELVRSIVS 128 VR+++ +L +++ + Sbjct: 145 VRRRVYDLAKALAA 158 >gi|148259042|ref|YP_001233169.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402169|ref|YP_004282250.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146400723|gb|ABQ29250.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325049030|dbj|BAJ79368.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 161 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 64/141 (45%), Positives = 92/141 (65%), Gaps = 16/141 (11%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+P+D++VG RIRLRR +LGMSQEKLG+ LG+TFQQVQKYE+GVNRVGASRL IS VL Sbjct: 17 RPSPIDVHVGSRIRLRRTLLGMSQEKLGDALGLTFQQVQKYERGVNRVGASRLFDISRVL 76 Query: 67 ESPISFFFDVSPTVCSDIS-----------SEENNVM-----DFISTPDGLQLNRYFIQI 110 + PISFFFD P +++ SE D ++ + L+L R + +I Sbjct: 77 DVPISFFFDDMPEGMNEMPMSGPRGRSNGLSEAQEPFGVGLDDHMTKRETLELVRAYYRI 136 Query: 111 DDVKVRQKIIELVRSIVSSEK 131 + VR+++ +L++S+ ++ Sbjct: 137 TEPTVRKRMFDLIKSLAPADS 157 >gi|144900187|emb|CAM77051.1| transcriptional regulators [Magnetospirillum gryphiswaldense MSR-1] Length = 161 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 87/131 (66%), Gaps = 9/131 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNP+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+G NRVGASRL +S VL Sbjct: 26 KPNPIDVHVGARVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGANRVGASRLFDLSRVL 85 Query: 67 ESPISFFFDVSPTVCSDIS---------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P+SFFFD +S + D ++ + L+L R + +I D VR+ Sbjct: 86 DVPVSFFFDDMSEEVEALSPRLISGLAEEPASFETDPMTKRETLELVRAYYRITDPHVRK 145 Query: 118 KIIELVRSIVS 128 ++++L +++ + Sbjct: 146 RVLDLAKALGA 156 >gi|86358808|ref|YP_470700.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282910|gb|ABC91973.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 141 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 62/124 (50%), Positives = 86/124 (69%), Gaps = 2/124 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ I E + + F+S+ +GL LN+ FI I+D VRQK++ L ++ Sbjct: 64 LRVPVGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNVRQKLVALAKT 121 Query: 126 IVSS 129 + ++ Sbjct: 122 LATA 125 >gi|167644301|ref|YP_001681964.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167346731|gb|ABZ69466.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 171 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 57/135 (42%), Positives = 92/135 (68%), Gaps = 5/135 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + PN VD++VG R+R+RR +LG+SQE L + LG+TFQQVQKYE+G NRV AS+L I++ Sbjct: 36 RTPNVVDLHVGGRVRMRRKMLGISQEHLADALGLTFQQVQKYERGANRVSASKLYEIAKT 95 Query: 66 LESPISFFFDVSPTVCSDISSEENN-----VMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+S+FF+ +D + + DF++TP+GL+L F +I +VR++I+ Sbjct: 96 LQVPVSYFFEGLADPVTDEGDDAGEAANRVITDFLNTPEGLELAAIFPKIGKGRVRRQIL 155 Query: 121 ELVRSIVSSEKKYRT 135 +LVR++ E + ++ Sbjct: 156 DLVRAMADDEGQQKS 170 >gi|159045315|ref|YP_001534109.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913075|gb|ABV94508.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 123 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 47/123 (38%), Positives = 79/123 (64%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKR+R RR ++GM+Q++L + +GI FQQ+QKYE G+NRV ASRL I+ L Sbjct: 1 MKHPVDVHVGKRVRHRRWMVGMTQQQLADKVGIKFQQIQKYETGMNRVSASRLWEIASSL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+SFFF+ + + + D +S + L+L R + I + + R+++ +L R + Sbjct: 61 GVPVSFFFEGLGAAQVAQTHDIDMPGDLLSDKEALELVRSYYAIPETQ-RRRLFDLARVL 119 Query: 127 VSS 129 + Sbjct: 120 SDA 122 >gi|150376667|ref|YP_001313263.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031214|gb|ABR63330.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 152 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 65/137 (47%), Positives = 91/137 (66%), Gaps = 5/137 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+D VG R+R+RR+++G+SQEKL + LGITFQQVQKYEKG NR+GASRLQ I+ Sbjct: 2 NKKDPNPIDAFVGSRVRMRRLMIGLSQEKLADGLGITFQQVQKYEKGTNRIGASRLQAIA 61 Query: 64 EVLESPISFFFDVSPTVC-----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++L SFFF S E + F+++ +G+ LNR F++I D +R+K Sbjct: 62 DILGVHPSFFFQQEEGSTQSGRPSGDIHESQEISSFVASKEGIALNRAFLKIADPVLRKK 121 Query: 119 IIELVRSIVSSEKKYRT 135 II LV ++ S + +T Sbjct: 122 IISLVAAMAQSPESDQT 138 >gi|85715705|ref|ZP_01046684.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85697358|gb|EAQ35237.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 149 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 68/133 (51%), Positives = 90/133 (67%), Gaps = 5/133 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PN VD +VG R+R+RR++LGMSQE+LGE LG+TFQQVQKYEKG NRVGASR++ IS Sbjct: 17 SIKSPNYVDKHVGSRVRMRRIMLGMSQEQLGEALGLTFQQVQKYEKGTNRVGASRIKQIS 76 Query: 64 EVLESPISFFFDVSPTVCSDIS-----SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 E+L P+SF F+ SPT S ++V F++T GL L R F +I D K+R+ Sbjct: 77 EILGVPVSFLFEGSPTRISATEDPGQVPSPDSVSSFVATTQGLALIRAFTRITDPKLRRS 136 Query: 119 IIELVRSIVSSEK 131 ++ LV I E Sbjct: 137 VVNLVEQIACRED 149 >gi|56697797|ref|YP_168167.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679534|gb|AAV96200.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 123 Score = 169 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKR+R RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MTHPVDVHVGKRVRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ ++ + + D + + L L R + I + + R+++ EL R + Sbjct: 61 DVPVSFFFEGLEEAEKVVAEKPSVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|116253382|ref|YP_769220.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|15007265|gb|AAK77322.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae] gi|115258030|emb|CAK09128.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 141 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 62/124 (50%), Positives = 87/124 (70%), Gaps = 2/124 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQNGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ + D ++ N + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPVGFFFENGGSGPIDGAT--NELNSFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IVSS 129 + + Sbjct: 122 LAVA 125 >gi|241205900|ref|YP_002976996.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859790|gb|ACS57457.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 141 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 63/122 (51%), Positives = 85/122 (69%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQNGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L PI FFF+ D ++ N + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPIGFFFENGGAGPIDGAT--NELNSFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|190893033|ref|YP_001979575.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|218517003|ref|ZP_03513843.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] gi|190698312|gb|ACE92397.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 141 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 62/122 (50%), Positives = 84/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPVGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|220920276|ref|YP_002495577.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944882|gb|ACL55274.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 137 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 59/131 (45%), Positives = 90/131 (68%), Gaps = 5/131 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R+RR+++G+SQEKLG+ LG+TFQQ+QKYEKG NR+ ASRLQ I+E Sbjct: 2 KKAPDPIDRHVGHRVRVRRLLVGVSQEKLGDALGVTFQQIQKYEKGANRISASRLQQIAE 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVM-----DFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L P+ FF++ +P + + E V D T LQL R F ++DD +VR+++ Sbjct: 62 MLGVPVGFFYEGAPRPENWLDEEHVEVARQPGSDLFWTSQDLQLVRAFQRVDDPQVRRRL 121 Query: 120 IELVRSIVSSE 130 + LV ++ + Sbjct: 122 VALVEALSGKD 132 >gi|218672917|ref|ZP_03522586.1| probable transcriptional regulator protein [Rhizobium etli GR56] Length = 141 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 64/124 (51%), Positives = 85/124 (68%), Gaps = 2/124 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L RS Sbjct: 64 LRVPVGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALARS 121 Query: 126 IVSS 129 + S Sbjct: 122 LAVS 125 >gi|209550535|ref|YP_002282452.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536291|gb|ACI56226.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 141 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 63/124 (50%), Positives = 85/124 (68%), Gaps = 2/124 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L PI FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPIGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IVSS 129 + + Sbjct: 122 LAVA 125 >gi|16264444|ref|NP_437236.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|307306783|ref|ZP_07586524.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307320821|ref|ZP_07600231.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15140581|emb|CAC49096.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|306893531|gb|EFN24307.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306902074|gb|EFN32672.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 152 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 5/137 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+D VG R+R+RR+++G+SQEKL + LGITFQQVQKYEKG NR+GASRLQ I+ Sbjct: 2 NKKDPNPIDAFVGSRVRMRRLMIGLSQEKLADGLGITFQQVQKYEKGTNRIGASRLQAIA 61 Query: 64 EVLESPISFFFDVSPTVC-----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++L SFFF + E + F+++ +G+ LNR F++I D +R+K Sbjct: 62 DILGVHPSFFFQQDEGSVHSGKPAADVHESQEISSFVASKEGIALNRAFLKITDPVLRKK 121 Query: 119 IIELVRSIVSSEKKYRT 135 II LV ++ + + + Sbjct: 122 IISLVAAMAQTPEADQA 138 >gi|295687480|ref|YP_003591173.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295429383|gb|ADG08555.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 140 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 64/132 (48%), Positives = 93/132 (70%), Gaps = 1/132 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + G ++ PNPVD++VG RIR+RR ILG+SQE+L E LG+TFQQ+QKYE+G NRV AS+L Sbjct: 4 LSGAERHPNPVDLHVGARIRMRRKILGVSQERLAEDLGLTFQQIQKYERGANRVSASKLY 63 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I++ L++ + +FF+ T +S E V DF+ T +GL+L F +I KVR++I Sbjct: 64 EIAKSLQASVGYFFEGLETTVDGVSEPGEPFVHDFLMTSEGLELAAQFPRITRSKVRRRI 123 Query: 120 IELVRSIVSSEK 131 +ELVRS+ E+ Sbjct: 124 LELVRSMAEEEE 135 >gi|163737462|ref|ZP_02144879.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|161388988|gb|EDQ13340.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 123 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGMTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+SFFF+ + S + D + + L L R + I + + R+++ EL R + Sbjct: 61 SVPVSFFFEGLQDDDAPASDKAQVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VSS 129 + Sbjct: 120 SDA 122 >gi|209552341|ref|YP_002284256.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539453|gb|ACI59385.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 152 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR+RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDGYVGARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +VL + SFFF+ + D+ + + V +F+ T +GL LNR F++I D +R+ Sbjct: 62 DVLHTSPSFFFEQENSEPLTLQGLDLPANSDPVAEFLQTKEGLVLNRAFLKIADRNIRET 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV+++ +E T+ Sbjct: 122 IIALVKAMAQAESSGVTL 139 >gi|83595104|ref|YP_428856.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83578018|gb|ABC24569.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 210 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 55/129 (42%), Positives = 81/129 (62%), Gaps = 9/129 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG R+RLRR +LG+SQEKLGE +G+TFQQVQKYE+G NR+GASRL + VL Sbjct: 66 KPNPVDVHVGARVRLRRTLLGLSQEKLGEAIGLTFQQVQKYERGANRIGASRLWDLGRVL 125 Query: 67 ESPISFFFDVSPTV---------CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P+++FFD D ++ + L+L R + +I D VR+ Sbjct: 126 DVPMAYFFDEMDDSTQRHSPMNIAQHPGEPPVQGTDTMTRRETLELVRAYYRIGDPGVRR 185 Query: 118 KIIELVRSI 126 ++ EL +++ Sbjct: 186 RVFELTKTL 194 >gi|260426926|ref|ZP_05780905.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421418|gb|EEX14669.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 123 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MTHPVDVHVGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +SFFF+ T S D + + L L R + I + + R+++ EL R + Sbjct: 61 DVSVSFFFEGLETEQDAPVSAAAMPSDILGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|167621874|ref|YP_001676659.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167351615|gb|ABZ74345.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 140 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 86/131 (65%), Gaps = 3/131 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +PNPVD++VG R+R+RR +LGMSQE L LGI+FQQ+QKYE+G NRV AS+L Sbjct: 5 IAPDHLPNPVDLHVGARVRVRRKVLGMSQEALANALGISFQQIQKYERGTNRVSASKLYD 64 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+ L +P+S+FF+ C +S E +V F++T +GL+L F +I VR+ Sbjct: 65 IARTLGAPVSYFFEGLADPCDPDASSDPTEASVQQFLATSEGLELAAIFPKIQRAAVRRH 124 Query: 119 IIELVRSIVSS 129 +++LVRS+ Sbjct: 125 VLQLVRSMAED 135 >gi|218681409|ref|ZP_03529306.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 141 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 63/122 (51%), Positives = 84/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGANRIGASRLQKISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L PI FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPIGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|218458068|ref|ZP_03498159.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 127 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 62/122 (50%), Positives = 84/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPVGFFFE--NGGAGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|254464668|ref|ZP_05078079.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206685576|gb|EDZ46058.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 123 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+SFFF+ + + D + + L L R + I + + R+++ EL R + Sbjct: 61 EVPVSFFFEGLQEEGKAPAEKSAVPEDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VSS 129 + Sbjct: 120 SDA 122 >gi|114705364|ref|ZP_01438272.1| dna-binding protein [Fulvimarina pelagi HTCC2506] gi|114540149|gb|EAU43269.1| dna-binding protein [Fulvimarina pelagi HTCC2506] Length = 138 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 76/138 (55%), Positives = 108/138 (78%), Gaps = 5/138 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK+PNP+DI+VG R+RLRR +L +SQEKLGE LGITFQQVQKYEKG NR+GASRLQ Sbjct: 1 MPVNKKMPNPIDIHVGSRVRLRRTMLSLSQEKLGEALGITFQQVQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQIDDVKV 115 ISEVL+ P++FFF+ +PT + ++ + ++DF+ST +GLQLN+ FI+I + KV Sbjct: 61 RISEVLKVPVAFFFEDAPTNGNTVTGMSEPHGGDYMVDFLSTSEGLQLNKAFIKIGNQKV 120 Query: 116 RQKIIELVRSIVSSEKKY 133 R+++++LVRS+ +++ Sbjct: 121 RRRVVDLVRSLAENDEDD 138 >gi|16127394|ref|NP_421958.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221236203|ref|YP_002518640.1| transcriptional regulator [Caulobacter crescentus NA1000] gi|13424834|gb|AAK25126.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220965376|gb|ACL96732.1| hypothetical transcriptional regulatory protein [Caulobacter crescentus NA1000] Length = 156 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 58/136 (42%), Positives = 92/136 (67%), Gaps = 6/136 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + PNPVD++VG R+R+RR +LG+SQE+L + LG+TFQQVQKYE+G NRV AS+L I++ Sbjct: 21 RRPNPVDLHVGGRVRMRRKLLGVSQEQLADSLGLTFQQVQKYERGANRVSASKLYEIAKT 80 Query: 66 LESPISFFFDVSPTVCSDISSE------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L+ P+SFFFD + ++ E V +F++TP+GL+L F +I +VR+++ Sbjct: 81 LQVPVSFFFDGLADPMNGAEADDAGLHAEKVVQEFLTTPEGLELAEVFPRIARGRVRRQV 140 Query: 120 IELVRSIVSSEKKYRT 135 ++LVR++ + Sbjct: 141 LDLVRAMADEASRDGA 156 >gi|295688460|ref|YP_003592153.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430363|gb|ADG09535.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 132 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 3/132 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+PVD++VG+R+R+RR LG SQ+ L + LG+TFQQVQKYE G NR+ AS+L Sbjct: 1 MAEDKTPDPVDVHVGRRLRMRRKDLGYSQQALADALGLTFQQVQKYEGGANRISASKLHA 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + L++PI FFF+ ++ N + +F STP G +L R ++ I+ +R+ Sbjct: 61 TAMFLKTPIGFFFEGLDDPEGADTTAADLANEMAEFWSTPGGPELARAYVAIESTGMRRH 120 Query: 119 IIELVRSIVSSE 130 + +L ++I E Sbjct: 121 LADLAKAIADDE 132 >gi|296532209|ref|ZP_06894960.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296267465|gb|EFH13339.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 149 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 11/140 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P+P+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+GVNR+GASRL Sbjct: 10 SEREHRPSPIDVHVGSRVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGVNRIGASRLFD 69 Query: 62 ISEVLESPISFFFDVSPTVCSD-----------ISSEENNVMDFISTPDGLQLNRYFIQI 110 ++ VL+ PI FFFD P +E D + + L+L R + +I Sbjct: 70 LARVLDVPIGFFFDDMPDAMGGQTALRARIGGFAEQQEGFEDDTLHKRETLELVRAYYRI 129 Query: 111 DDVKVRQKIIELVRSIVSSE 130 + VR+++ EL++S+ + Sbjct: 130 TEPSVRKRVFELIKSLAPID 149 >gi|260432963|ref|ZP_05786934.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416791|gb|EEX10050.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 123 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKR+R RR ++GM+Q++L + +GI FQQ+QKYE G NR+ ASRL I+E L Sbjct: 1 MTHHVDVHVGKRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRISASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ S +++ D + + L L R + I + + R+++ EL R + Sbjct: 61 DVPVSFFFEGLEETQKADSDKQSVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|222080150|ref|YP_002540013.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738795|gb|ACM39574.1| transcriptional regulator [Agrobacterium vitis S4] Length = 146 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 67/131 (51%), Positives = 88/131 (67%), Gaps = 2/131 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+PNPVDI VG+RI+ RR ILGMSQ KL E LG+TFQQVQKY+KG NRVGASRLQ Sbjct: 7 MKRGPKVPNPVDIEVGERIKARRRILGMSQGKLAEALGVTFQQVQKYKKGKNRVGASRLQ 66 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +++ + P S+FF D S DI+S + F++ +GL LNR F I VR++ Sbjct: 67 NVATIFGVPFSYFFPDQSSGTEGDITSNPGKEITAFLANNEGLDLNRAFALISSPLVRKR 126 Query: 119 IIELVRSIVSS 129 ++ LV+SI + Sbjct: 127 VVGLVKSISEA 137 >gi|294676430|ref|YP_003577045.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475250|gb|ADE84638.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 120 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 48/122 (39%), Positives = 80/122 (65%), Gaps = 4/122 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G++Q++L + +GI FQQ+QKYE G+NRV ASRL I++ L Sbjct: 1 MKHPVDVHVGKRIRHRRWLVGVTQQQLADKVGIKFQQIQKYETGMNRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ + +++E D S + L L R + I + + R+++ EL + + Sbjct: 61 DVPVSFFFEGLSGEDPNTAAQEG---DLFSDKEALALVRSYYAIPEAQ-RRRLFELAKVL 116 Query: 127 VS 128 Sbjct: 117 SD 118 >gi|295688227|ref|YP_003591920.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430130|gb|ADG09302.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 144 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 57/133 (42%), Positives = 91/133 (68%), Gaps = 6/133 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + PNPVD++VG R+R+RR ++G+SQE+L + LG+TFQQVQKYE+G NRV AS+L I++ Sbjct: 8 RRPNPVDLHVGGRVRMRRKLMGVSQEQLADSLGLTFQQVQKYERGANRVSASKLYDIAKT 67 Query: 66 LESPISFFFDVSPTVCSDIS------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L+ P+SFFF+ S E V +F++TP+GL+L F +I +VR+++ Sbjct: 68 LQVPVSFFFEGLADPMSGAEIDATAQHAEKVVQEFLTTPEGLELAEVFPRIGRGRVRRQV 127 Query: 120 IELVRSIVSSEKK 132 ++LVR++ ++ Sbjct: 128 LDLVRAMADEAQR 140 >gi|89053723|ref|YP_509174.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88863272|gb|ABD54149.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 126 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 51/125 (40%), Positives = 83/125 (66%), Gaps = 3/125 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G +Q++L E +GI FQQ+QKYE G+NRV ASRL I E L Sbjct: 1 MTHPVDVHVGKRIRHRRWMVGRTQQQLAETVGIKFQQIQKYETGMNRVSASRLWDIGEAL 60 Query: 67 ESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + P+++FF+ S V SD ++ E D ++ + L+L R + I + + R+++ +L R Sbjct: 61 DVPVAYFFEGVGSEEVASDTATGEALPGDLLADREALELVRSYYAIPENQ-RRRLFDLAR 119 Query: 125 SIVSS 129 + + Sbjct: 120 VLSDA 124 >gi|116249754|ref|YP_765592.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254402|emb|CAK04035.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 152 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 65/138 (47%), Positives = 94/138 (68%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K N +D VG RIR+RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTANAIDSYVGARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL + SFFF+ + D+ + + V +F+ T +GL LNR F++I D +R+ Sbjct: 62 EVLHTSPSFFFEQENSEPLTLQGLDLPANMDPVAEFLRTKEGLVLNRAFLKIADSNIRET 121 Query: 119 IIELVRSIVSSEKKYRTI 136 +I LV+++ +E + T+ Sbjct: 122 VIALVKAMAQAESRGLTL 139 >gi|163797135|ref|ZP_02191090.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] gi|159177651|gb|EDP62204.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] Length = 150 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 3/126 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG RIRLRR +LGMSQE+LG+ LG+TFQQVQKYE+G NRVGASRL ++ L Sbjct: 19 NPNPVDVHVGVRIRLRRTLLGMSQERLGDALGLTFQQVQKYERGANRVGASRLFDLARAL 78 Query: 67 ESPISFFFDVSPTVCSDI---SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P+ FFFD + + D + + ++L R F +I D R+++ EL Sbjct: 79 QVPVGFFFDDLADGTVEGKVPPASATPADDPMQQRETIELVRAFYRIPDPTARRRLYELT 138 Query: 124 RSIVSS 129 RSI + Sbjct: 139 RSIADA 144 >gi|221232988|ref|YP_002515424.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] gi|220962160|gb|ACL93516.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] Length = 144 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 64/131 (48%), Positives = 91/131 (69%), Gaps = 2/131 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ PNPVD++VG RIR+RR ILG+SQE+L E LG+TFQQVQKYE+G NRV AS+L Sbjct: 7 SDTERHPNPVDLHVGARIRMRRRILGVSQERLAEDLGLTFQQVQKYERGANRVSASKLYE 66 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+ L+SP+ +FF+ +E E V DF+ TP+GL+L F ++ KVR++I Sbjct: 67 IARSLQSPVDYFFEGLEDTTGGGMAERGEPFVHDFLMTPEGLELATLFPKVSRQKVRRRI 126 Query: 120 IELVRSIVSSE 130 +ELVRS+ + + Sbjct: 127 LELVRSMAAED 137 >gi|99081750|ref|YP_613904.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038030|gb|ABF64642.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 123 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ISFFF+ + + D + + L L R + I + + R+++ EL R + Sbjct: 61 DVNISFFFEGLQDETKSVPDKARVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|83945000|ref|ZP_00957366.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] gi|83851782|gb|EAP89637.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] Length = 144 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 4/128 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + PN VD +VG RIRLRR +L +SQEKLGE LG+TFQQVQKYE+G NRVGA RL Sbjct: 1 MTANPRGPNAVDRHVGSRIRLRRQLLNLSQEKLGEELGVTFQQVQKYERGTNRVGAGRLW 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVR 116 ++++VL+ P+SFF+D E + V DFI + DG+ L + F +I D KVR Sbjct: 61 NLAKVLDVPVSFFYDGVAETVGQPGFSEGDQTPIVDDFIQSADGVALAQAFARIKDSKVR 120 Query: 117 QKIIELVR 124 ++I+ELVR Sbjct: 121 RRILELVR 128 >gi|218670209|ref|ZP_03519880.1| probable transcriptional regulator protein [Rhizobium etli GR56] Length = 152 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDSYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL + SFFF+ + D + V +F+ T +GL LNR F++I D ++R+ Sbjct: 62 EVLHTSPSFFFEQGDSQPLAVRGLDGPDHADPVAEFLRTKEGLVLNRAFLKIADPEIRES 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV ++ +E + T Sbjct: 122 IIALVTAMGQAESRGLTA 139 >gi|227820124|ref|YP_002824095.1| transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339123|gb|ACP23342.1| probable transcriptional regulator protein [Sinorhizobium fredii NGR234] Length = 148 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 64/132 (48%), Positives = 91/132 (68%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK P +DI+VG RIRLRR+ L SQ KLGE L ++FQQVQKYEKG+NRVGASRLQ + Sbjct: 6 NKKEPRAIDIHVGNRIRLRRLALDWSQTKLGEALDVSFQQVQKYEKGLNRVGASRLQRAA 65 Query: 64 EVLESPISFFFDVSPTVCSDIS-----SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL +S+FF+ P + + + ++ F++T +G+ LNR F ++ D +VR+K Sbjct: 66 EVLSVSVSYFFEGGPETSNGGEQSAAVTSSDEMLQFLATEEGVALNRAFARLSDPQVRRK 125 Query: 119 IIELVRSIVSSE 130 I+ LV+++ SE Sbjct: 126 IVALVKALAPSE 137 >gi|114571577|ref|YP_758257.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114342039|gb|ABI67319.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 140 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 67/133 (50%), Positives = 92/133 (69%), Gaps = 4/133 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + PNP+DI+VG RIRLRR +L MSQE+LG+ LG+TFQQVQKYE+G NRVGASRL +S Sbjct: 5 NPRGPNPIDIHVGSRIRLRRQLLKMSQERLGDDLGVTFQQVQKYERGANRVGASRLYRMS 64 Query: 64 EVLESPISFFFDVSPTVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 VLE P+ FFF+ + E++ V DFI + DG+ L F +I D KVR+++ Sbjct: 65 RVLEVPVQFFFEGMGERSTMTGMAEDDQTPIVYDFIRSADGVSLAESFSRIKDAKVRKRV 124 Query: 120 IELVRSIVSSEKK 132 +ELVR++ + + Sbjct: 125 LELVRTLADEDDE 137 >gi|16124307|ref|NP_418871.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|13421145|gb|AAK22039.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] Length = 142 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 64/131 (48%), Positives = 91/131 (69%), Gaps = 2/131 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ PNPVD++VG RIR+RR ILG+SQE+L E LG+TFQQVQKYE+G NRV AS+L Sbjct: 5 SDTERHPNPVDLHVGARIRMRRRILGVSQERLAEDLGLTFQQVQKYERGANRVSASKLYE 64 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+ L+SP+ +FF+ +E E V DF+ TP+GL+L F ++ KVR++I Sbjct: 65 IARSLQSPVDYFFEGLEDTTGGGMAERGEPFVHDFLMTPEGLELATLFPKVSRQKVRRRI 124 Query: 120 IELVRSIVSSE 130 +ELVRS+ + + Sbjct: 125 LELVRSMAAED 135 >gi|288959693|ref|YP_003450034.1| HTH-type transcriptional regulator [Azospirillum sp. B510] gi|288912001|dbj|BAI73490.1| HTH-type transcriptional regulator [Azospirillum sp. B510] Length = 164 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 87/131 (66%), Gaps = 13/131 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNP+D++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL Sbjct: 22 KPNPIDVHVGSRVRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVL 81 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM-------------DFISTPDGLQLNRYFIQIDDV 113 + P+SFFFD P + E+++ D ++ + L+L R + +I+D Sbjct: 82 DVPVSFFFDDMPAEAAAARVEDDDEAGASDERSANTYEPDPMAKRETLELVRAYYKINDP 141 Query: 114 KVRQKIIELVR 124 VR+++ EL + Sbjct: 142 SVRKRLFELTK 152 >gi|126735102|ref|ZP_01750848.1| putative Cro/CI transcriptional regulator [Roseobacter sp. CCS2] gi|126715657|gb|EBA12522.1| putative Cro/CI transcriptional regulator [Roseobacter sp. CCS2] Length = 123 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 48/123 (39%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGKRIR RR + G +Q++L E +GI FQQ+QKYE G+NRV ASRL I++VL Sbjct: 1 MKHPVDIHVGKRIRHRRWMNGTTQQQLAEAVGIKFQQIQKYETGMNRVSASRLWDIAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +SFFF+ ++ + D ++ + L L R + I + + R+++ +L R + Sbjct: 61 GVNVSFFFEGLDAQTDLDANNSDMPGDILTDKEALDLLRSYYAIPENQ-RRRLFDLARVL 119 Query: 127 VSS 129 + Sbjct: 120 SEA 122 >gi|254511979|ref|ZP_05124046.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221535690|gb|EEE38678.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 123 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKR+R RR ++GM+Q++L + +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MTHHVDVHVGKRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRVSASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+SFFF+ S +++ D + + L L R + I + + R+++ EL R + Sbjct: 61 EVPVSFFFEGLEETQKSDSDKKSVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|190894495|ref|YP_001984788.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700156|gb|ACE94238.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 152 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 69/138 (50%), Positives = 91/138 (65%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDSYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFF---DVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL + SFFF D P + + + V +F+ T +GL LNR F++I D +R Sbjct: 62 EVLHTSPSFFFEQGDSEPVAAPGLGGRDRTDPVAEFLQTKEGLVLNRAFLKIADPHIRAS 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV ++ +E + TI Sbjct: 122 IIALVTAMGQAESRGLTI 139 >gi|241258713|ref|YP_002978597.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863183|gb|ACS60846.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 152 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 67/138 (48%), Positives = 96/138 (69%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K N +D VG RIR+RR +LGMSQE+LGE +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTANAIDSYVGARIRMRRQLLGMSQERLGEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL++ SFFF+ + D+S+ V +F+ T +GL LNR F++I D +R+ Sbjct: 62 EVLQTSPSFFFEQENSEPLTLQGLDLSANMEPVAEFLRTKEGLVLNRAFLKIADSNIRET 121 Query: 119 IIELVRSIVSSEKKYRTI 136 +I LV+++ +E + T+ Sbjct: 122 VIALVKAMAQAESRGVTL 139 >gi|330991161|ref|ZP_08315114.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] gi|329761747|gb|EGG78238.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] Length = 158 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 33/159 (20%) Query: 1 MVGNKKIP---NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M G K+P NPVD++VG RIRLRR +LGMSQE+LG LG+TFQQVQKYE+G NRVGAS Sbjct: 1 MTG--KMPTTSNPVDVHVGNRIRLRRTLLGMSQERLGNALGLTFQQVQKYERGRNRVGAS 58 Query: 58 RLQHISEVLESPISFFFDVSPT--------------------------VCSDISSEENNV 91 RL ++ VL+ P++FFF P D+ N Sbjct: 59 RLYDLACVLDVPVAFFFAGLPDPVGSMEPCPSGPEGVSEPAVPLGGSMAVGDMPPPATNT 118 Query: 92 MD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 D S + ++L R + I+D R+++++LVRS+ + Sbjct: 119 GDLALFSRRETIELVRAYYGIEDSSTRRRVLDLVRSMGA 157 >gi|222087623|ref|YP_002546160.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725071|gb|ACM28227.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 152 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 62/129 (48%), Positives = 94/129 (72%), Gaps = 5/129 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K+PNP+D VG R+R+RR++LGMSQE+L + +G+TFQQVQKYEKG NR+GASRLQ I+ Sbjct: 2 SAKVPNPIDAYVGSRVRMRRLMLGMSQERLADQIGVTFQQVQKYEKGTNRIGASRLQAIA 61 Query: 64 EVLESPISFFF--DVSPTVCSDISSEE---NNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 VL P++FFF D S + +D ++ DF+++ +GL LN+ F++I+D VRQ Sbjct: 62 SVLAVPVAFFFQQDNSQPLATDGLGAISGLEDLSDFLTSKEGLSLNKAFMKINDPSVRQS 121 Query: 119 IIELVRSIV 127 ++ L++S+ Sbjct: 122 VLMLIKSLA 130 >gi|190014814|ref|YP_001967578.1| orf_Bo182 [Agrobacterium tumefaciens] gi|71849617|gb|AAZ50565.1| orf_Bo182 [Agrobacterium tumefaciens] Length = 140 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 66/137 (48%), Positives = 90/137 (65%), Gaps = 5/137 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K PN +D+ VG RIRL+R +GMSQ+ L LG+TFQQVQKYEKG NRVGASRL Sbjct: 1 MSDAGKAPNAIDVEVGARIRLKRKPIGMSQQSLAGKLGVTFQQVQKYEKGTNRVGASRLS 60 Query: 61 HISEVLESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 I+ L+ P+S+FFD + D I+ E + V F+S+ +G LNR F+QI V Sbjct: 61 QIATALDVPMSYFFDGNQGERQDDDNPHITRETDEVALFLSSTEGFNLNRAFMQIPSAAV 120 Query: 116 RQKIIELVRSIVSSEKK 132 RQK++ LV+S+ +E++ Sbjct: 121 RQKVVLLVKSVARAEEE 137 >gi|167643999|ref|YP_001681662.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167346429|gb|ABZ69164.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 144 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 65/132 (49%), Positives = 92/132 (69%), Gaps = 4/132 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V ++ PNPVD++VG RIR+RR ILG+SQE+L + LG+TFQQVQKYE+G NRV AS+L Sbjct: 5 VDQERHPNPVDLHVGARIRMRRKILGVSQERLADDLGLTFQQVQKYERGANRVSASKLYE 64 Query: 62 ISEVLESPISFFFDV--SPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I++ L+S +S+FF+ PT S E V DF+ TP+GL+L F +I +VR+ Sbjct: 65 IAKSLQSSVSYFFEGLADPTDLEGFSENGSEQFVHDFLMTPEGLELAALFPRIGKSRVRR 124 Query: 118 KIIELVRSIVSS 129 +I++LVRS+ Sbjct: 125 RILDLVRSMAED 136 >gi|227819384|ref|YP_002823355.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338383|gb|ACP22602.1| probable transcriptional regulator protein, XRE familiy [Sinorhizobium fredii NGR234] Length = 150 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 66/145 (45%), Positives = 94/145 (64%), Gaps = 5/145 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D VG R+R+RR+++GMSQEKL + LGITFQQVQKYEKG NR+GASRLQ I++ Sbjct: 2 KKNPNPIDTFVGSRVRMRRLMVGMSQEKLADGLGITFQQVQKYEKGTNRIGASRLQAIAD 61 Query: 65 VLESPISFFFDVSPTVCSDIS----SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +L SFFF S + E + + F+++ +G+ LNR F++I D +R+KII Sbjct: 62 ILGVHPSFFFQQDEKAQSRETAADVHESHEISSFVASKEGIALNRAFLKIVDPVLRKKII 121 Query: 121 ELVRSIVSS-EKKYRTIEEECMVEQ 144 LV ++ S E + + E+ Sbjct: 122 ALVAAMAHSGEIEQAAVASAARHEE 146 >gi|170741362|ref|YP_001770017.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168195636|gb|ACA17583.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 142 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 56/129 (43%), Positives = 87/129 (67%), Gaps = 5/129 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R+RR+++G+SQEKLG+ LG+TFQQ+QKYEKG NR+ ASRLQ I+E Sbjct: 6 KKAPDPIDRHVGHRVRVRRLLMGVSQEKLGDALGVTFQQIQKYEKGANRISASRLQQIAE 65 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVM-----DFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L P+ FF++ +P + E + D T LQL R F +++D +R+++ Sbjct: 66 MLGVPVGFFYEGAPRSENGHDEERGDAARAPSVDLFWTSQDLQLVRAFQRVNDPLLRRRV 125 Query: 120 IELVRSIVS 128 + LV ++ Sbjct: 126 VSLVEAMGG 134 >gi|167644800|ref|YP_001682463.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347230|gb|ABZ69965.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 145 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 59/137 (43%), Positives = 92/137 (67%), Gaps = 6/137 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + PNPVD++VG R+R+RR +LG+SQE+L + LG+TFQQVQKYE+G NRV AS+L I++ Sbjct: 8 RRPNPVDLHVGGRVRMRRKLLGVSQEQLADSLGLTFQQVQKYERGANRVSASKLYEIAKT 67 Query: 66 LESPISFFFDVSPTVCSDISSE------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L+ P+SFFFD ++ E V +F++TP+GL+L F +I +VR+++ Sbjct: 68 LQVPVSFFFDGLADPMDGSENDEIGQQAERIVQEFLTTPEGLELAEVFPKIGRGRVRRQV 127 Query: 120 IELVRSIVSSEKKYRTI 136 ++LVR++ + T Sbjct: 128 LDLVRAMAEEAARTETA 144 >gi|144900588|emb|CAM77452.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 160 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 9/135 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNP+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+G NRVGASRL +S VL Sbjct: 24 KPNPIDVHVGNRVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGANRVGASRLYDLSRVL 83 Query: 67 ESPISFFFDVSPTVCSDISS---------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P+S+FFD S + ++ + L+L R + +I D VR+ Sbjct: 84 DVPVSYFFDDMNDETMAASPRHMVRATEDPPESEEAILAQRETLELVRAYTRIKDPNVRR 143 Query: 118 KIIELVRSIVSSEKK 132 ++ EL R++ E Sbjct: 144 QVQELARTLAVPEDS 158 >gi|85706845|ref|ZP_01037936.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668638|gb|EAQ23508.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 124 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MPHPVDVHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIAESL 60 Query: 67 ESPISFFFDVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ISFFF+ + + D + + L L R + I + + R+++ +L R Sbjct: 61 DVTISFFFEGLEQDGGVEREKSDPARADLMGDKEALDLVRSYYAIPENQ-RRRLFDLARV 119 Query: 126 IVS 128 + Sbjct: 120 LSE 122 >gi|86140033|ref|ZP_01058597.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85823283|gb|EAQ43494.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 122 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 75/122 (61%), Gaps = 2/122 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G +Q++L E +GI FQQ+QKYE G NRV ASRL IS+ + Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGKTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDAM 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ D + D + + L L R + I + + R+++ EL R + Sbjct: 61 DVPVSFFFEGLDEEAKD-GGKSAVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 118 Query: 127 VS 128 Sbjct: 119 SD 120 >gi|84515302|ref|ZP_01002664.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84510585|gb|EAQ07040.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 123 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD+ VGKRIR RR + G +Q++L E +GI FQQ+QKYE G+NRV ASRL IS VL Sbjct: 1 MKHPVDVYVGKRIRHRRWMNGTTQQQLAENVGIKFQQIQKYETGMNRVSASRLWDISNVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+SFFF+ + + + D ++ + L+L R + I + + R+++ +L R + Sbjct: 61 GVPVSFFFEGYDAQPAVETRISDMPGDILTDKEALELLRSYYAIPENQ-RRRLFDLARVL 119 Query: 127 VSS 129 + Sbjct: 120 SEA 122 >gi|259416694|ref|ZP_05740614.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259348133|gb|EEW59910.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 124 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ISFFF+ + + E+ V D + + L L R + I + + R+++ EL R Sbjct: 61 DVNISFFFEGLQDETAKVVPEKARVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARV 119 Query: 126 IVS 128 + Sbjct: 120 LSD 122 >gi|16126908|ref|NP_421472.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235691|ref|YP_002518128.1| transcriptional regulator [Caulobacter crescentus NA1000] gi|13424258|gb|AAK24640.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964864|gb|ACL96220.1| transcriptional regulator [Caulobacter crescentus NA1000] Length = 153 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 57/133 (42%), Positives = 84/133 (63%), Gaps = 4/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+PVDI+VG+R+R+RR LG SQ+ L + LG+TFQQVQKYE G NR+ AS+L Sbjct: 22 MAEDKS-PDPVDIHVGRRLRMRRKDLGYSQQALADALGLTFQQVQKYEGGSNRISASKLH 80 Query: 61 HISEVLESPISFFFDV--SPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + L++P++FFF+ P ++E N + F S P G L R F I+ V +R+ Sbjct: 81 GAAMFLKTPVAFFFEGLEDPEGVDGTAAELANEMASFWSLPGGPDLARAFSAIESVSMRK 140 Query: 118 KIIELVRSIVSSE 130 +++L R+I E Sbjct: 141 HLLDLARAIAGQE 153 >gi|209544249|ref|YP_002276478.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531926|gb|ACI51863.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 174 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 21/144 (14%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD++VG RIRLRR ++G+SQE+LG+ LG+TFQQVQKYE+G NRV ASRL +SEVL+ Sbjct: 31 PSPVDVHVGGRIRLRRTLMGLSQERLGDALGLTFQQVQKYERGTNRVSASRLYELSEVLD 90 Query: 68 SPISFFFDVSPT---------------------VCSDISSEENNVMDFISTPDGLQLNRY 106 P+SFFFD + + + + + S + ++L R Sbjct: 91 VPVSFFFDGLDSGQAGSKATNAIPGFAQAQEAFGGAPEGAAPASEIALFSRRETIELVRI 150 Query: 107 FIQIDDVKVRQKIIELVRSIVSSE 130 + +I+D +R+++++L+R + E Sbjct: 151 YYRIEDPAMRRRVLDLIRMMAPPE 174 >gi|149203704|ref|ZP_01880673.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149142821|gb|EDM30863.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 124 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MPHPVDVHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIAESL 60 Query: 67 ESPISFFFDVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ISFFF+ + + D + + L L R + I + + R+++ +L R Sbjct: 61 DVEISFFFEGLDQEGGVEREKSDPARADLMGDKEALDLVRSYYAIPENQ-RRRLFDLARV 119 Query: 126 IVS 128 + Sbjct: 120 LSE 122 >gi|126739240|ref|ZP_01754934.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126719857|gb|EBA16565.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 122 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 75/123 (60%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G +Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGKTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+SFFF+ + D + + L L R + I + + R+++ EL R + Sbjct: 61 EVPVSFFFEGLEEDGK-AAGNTAVPDDLMGDKEALDLVRSYYSIPENQ-RRRLFELARVL 118 Query: 127 VSS 129 + Sbjct: 119 SDA 121 >gi|258541402|ref|YP_003186835.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632480|dbj|BAH98455.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256635537|dbj|BAI01506.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256638592|dbj|BAI04554.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256641646|dbj|BAI07601.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256644701|dbj|BAI10649.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256647756|dbj|BAI13697.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256650809|dbj|BAI16743.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653800|dbj|BAI19727.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] Length = 164 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 87/149 (58%), Gaps = 22/149 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +D +VGKRIRLRR +LG+SQEKLGE LGITFQQ+QKYE+G NRVGASRL Sbjct: 13 MIQPHAAASAIDAHVGKRIRLRRTLLGLSQEKLGEALGITFQQIQKYERGANRVGASRLY 72 Query: 61 HISEVLESPISFFFDVSPTVC----------------------SDISSEENNVMDFISTP 98 HI+ VL+ PISFFFD V + ++ + T Sbjct: 73 HIACVLDVPISFFFDDMHPVGAVSNKHAQFSETRKSFGTTSDKNTPAAPTTDTKSVFKTQ 132 Query: 99 DGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L+L R + I D ++R+KI+EL+ ++ Sbjct: 133 ETLELVRAYYSIPDTQMRRKILELMLTMS 161 >gi|10954734|ref|NP_066669.1| hypothetical protein pRi1724_p089 [Agrobacterium rhizogenes] gi|8918734|dbj|BAA97799.1| riorf88 [Agrobacterium rhizogenes] gi|10567398|dbj|BAB16207.1| riorf88 [Agrobacterium rhizogenes] Length = 169 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 59/133 (44%), Positives = 85/133 (63%), Gaps = 4/133 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P+D+ VG RIR RR +LGMSQ KL E LG+TFQQVQKYEKG NRVGASRL +++ V Sbjct: 33 KTPSPIDVEVGARIRTRRRVLGMSQAKLAEALGVTFQQVQKYEKGTNRVGASRLLNVANV 92 Query: 66 LESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P+S FF+ S+ E + F+ + +G LN F +I + VR++++ Sbjct: 93 LGVPVSSFFNSDTRDGQAERPRGSTAETELGAFVQSDEGRDLNGAFARIAEPAVRRQVVS 152 Query: 122 LVRSIVSSEKKYR 134 LV+++ ++E Sbjct: 153 LVKAMAATEVNGS 165 >gi|254502751|ref|ZP_05114902.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438822|gb|EEE45501.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 112 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 62/112 (55%), Positives = 85/112 (75%), Gaps = 5/112 (4%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 M+LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ VL+ P+SFFF+ +P + Sbjct: 1 MMLGMSQEKLGEALGITFQQIQKYEKGTNRIGASRLQHIATVLKVPVSFFFEDAPGTPEE 60 Query: 84 ISS-----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + V+DF+S+ +GL LN+ F++I+D KVR++I++LVRS+ E Sbjct: 61 AEGFGETQPTSYVVDFLSSSEGLSLNKAFVRIEDPKVRRRIVDLVRSLAGDE 112 >gi|260574596|ref|ZP_05842599.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259023013|gb|EEW26306.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 120 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 4/123 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VGKRIR RR ++GM+Q++L + +GI FQQ+QKYE G+NRV ASRL I+E L Sbjct: 1 MKHPVDAHVGKRIRHRRWMVGMTQQQLADRVGIKFQQIQKYETGMNRVSASRLWDIAETL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ISFFF+ + + DF++ + L+L R + I + + R+++ +L R + Sbjct: 61 GVAISFFFEGIDESRE---ASKTMDGDFLADKEALELVRSYYSIPEAQ-RRRLFDLARVL 116 Query: 127 VSS 129 + Sbjct: 117 SDA 119 >gi|197105969|ref|YP_002131346.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479389|gb|ACG78917.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 143 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 2/122 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD +VG RIR+RR +G+SQE+L E LGITFQQVQKYE+G NRV AS+L I++ L+ Sbjct: 23 PHPVDRHVGLRIRMRRKEIGVSQERLAEALGITFQQVQKYERGANRVSASKLWEIAQALK 82 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + +++F++ ++ N DF+ T +GL+L F +I +R+K++ELVR++ Sbjct: 83 TGVTYFYEGLND--HELGDAGRNAQDFMLTGEGLELMSTFPRIAQPALRRKLVELVRAMA 140 Query: 128 SS 129 Sbjct: 141 EE 142 >gi|315497219|ref|YP_004086023.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315415231|gb|ADU11872.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 139 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 7/139 (5%) Query: 1 MVGNKKI---PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M N K PNPVD++VG R+R+RR LGMSQE L E + +TFQQVQKYE+G NR+ AS Sbjct: 1 MDENSKTDRSPNPVDLHVGARVRMRRKFLGMSQEALAETISLTFQQVQKYERGSNRISAS 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCS----DISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +L IS L++P+++FF+ + S E V F+ T +G++L F +I + Sbjct: 61 KLHEISRALKAPVAYFFEGYGESEAVEGFSESQSEQFVHGFLMTTEGIELAEAFPRIKNA 120 Query: 114 KVRQKIIELVRSIVSSEKK 132 K R++I+ELVR++ + Sbjct: 121 KHRRRILELVRALAEDSED 139 >gi|77462437|ref|YP_351941.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126461314|ref|YP_001042428.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|146276727|ref|YP_001166886.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|332560321|ref|ZP_08414643.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77386855|gb|ABA78040.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126102978|gb|ABN75656.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] gi|145554968|gb|ABP69581.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17025] gi|332278033|gb|EGJ23348.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 120 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 4/123 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VGKRIR RR ++GM+Q++L +C+GI FQQ+QKYE G+NRV ASRL I+E L Sbjct: 1 MKHPVDAHVGKRIRHRRWMVGMTQQQLADCVGIKFQQIQKYETGMNRVSASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ISFFF+ E D I+ + L+L R + I + + R+++ +L R + Sbjct: 61 GVSISFFFEGLEGAGDQARQAEG---DRITDKEALELVRSYYAIPEAQ-RRRLFDLARVL 116 Query: 127 VSS 129 + Sbjct: 117 SEA 119 >gi|114762993|ref|ZP_01442423.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114544317|gb|EAU47325.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 127 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 75/126 (59%), Gaps = 5/126 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MTHPVDVHVGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 E P+SFFF+ + D + + L L R + I + + R+++ EL Sbjct: 61 EVPVSFFFEGIDAEQEAPEEAAAPAAAMPADILGDKEALDLVRSYYAIPENQ-RRRLFEL 119 Query: 123 VRSIVS 128 R + Sbjct: 120 ARVLSD 125 >gi|18071257|ref|NP_542325.1| hypothetical protein PBC5p65 [Sinorhizobium phage PBC5] gi|17940363|gb|AAL49607.1|AF448724_44 unknown [Sinorhizobium phage PBC5] Length = 135 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 68/121 (56%), Positives = 82/121 (67%), Gaps = 2/121 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNP+D VG RIRLRR I+GMSQE L LGITFQQVQKYEKG NRVGASRLQ IS Sbjct: 8 SPKKPNPIDTQVGARIRLRRNIIGMSQETLAAHLGITFQQVQKYEKGANRVGASRLQAIS 67 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 E L+ S+FFD +E VM FI++ +G+ LNR F +I D R KI++LV Sbjct: 68 EALKVAPSYFFDKPEGATEANGGDE--VMSFIASSEGIALNRAFARIQDSATRHKIVDLV 125 Query: 124 R 124 + Sbjct: 126 K 126 >gi|23011267|ref|ZP_00051678.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 160 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 81/131 (61%), Gaps = 13/131 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ P+ Sbjct: 3 IDVHVGGRMRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVLDVPV 62 Query: 71 SFFFDVSPTVCSDIS-------------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S+FFD S D ++ + L+L R + I D +VR+ Sbjct: 63 SYFFDDMADGVQAQSPVNIIKGSVGLSEEPATFEADPMTKRETLELVRAYYNITDPQVRK 122 Query: 118 KIIELVRSIVS 128 ++ EL +++ + Sbjct: 123 RVYELAKALAA 133 >gi|162147196|ref|YP_001601657.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785773|emb|CAP55344.1| putative transcriptional Regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 174 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 21/144 (14%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD++VG RIRLRR ++G+SQE+LG+ LG+TFQQVQKYE+G NRV ASRL +SEVL+ Sbjct: 31 PSPVDVHVGGRIRLRRTLMGLSQERLGDALGLTFQQVQKYERGTNRVSASRLYELSEVLD 90 Query: 68 SPISFFFDVSPT---------------------VCSDISSEENNVMDFISTPDGLQLNRY 106 P+SFFFD + + + + + S + ++L R Sbjct: 91 VPVSFFFDGLDSGQAGSKATNAIPGFAQAQEAFGGAPEGAAPASEIALFSRREMIELVRI 150 Query: 107 FIQIDDVKVRQKIIELVRSIVSSE 130 + +I+D +R+++++L+R + E Sbjct: 151 YYRIEDPAMRRRVLDLIRMMAPPE 174 >gi|144897602|emb|CAM74466.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 149 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 53/123 (43%), Positives = 81/123 (65%), Gaps = 2/123 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D +VG R+RLRR ++G+SQ +L + +G+TFQQVQKYE G NR+ ASRL HISE L+ Sbjct: 20 PDPIDTHVGARLRLRRTLMGLSQTELAKSVGLTFQQVQKYESGANRISASRLYHISEALD 79 Query: 68 SPISFFFDVSPTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 P+SFFFD E+ V S+ +GL++ R + +I D +R+ + +L +S Sbjct: 80 VPVSFFFDDMSRSSGKYGLHEDAVAFSAPESSREGLEMMRNYHRITDEAIRRSVYDLTKS 139 Query: 126 IVS 128 + + Sbjct: 140 LAA 142 >gi|227819239|ref|YP_002823210.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338238|gb|ACP22457.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 149 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 93/132 (70%), Gaps = 2/132 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 ++ P+P+D +VG++IR++R++L MSQ +L + LG+T+QQVQKYE G RV ASRLQ I+ Sbjct: 8 RRRPDPIDSHVGQKIRMQRLLLHMSQTELAKALGVTYQQVQKYENGRTRVSASRLQAIAN 67 Query: 65 VLESPISFFFDVSPTVCSDIS--SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 VLE P++FFF+ S + SD + + + ++F+S+P GL LNR F +I DV+VR+ + L Sbjct: 68 VLEVPLTFFFESSASDHSDDAGLAASRSTVEFVSSPMGLALNRAFSRIADVRVRRSFLGL 127 Query: 123 VRSIVSSEKKYR 134 V+ + + + Sbjct: 128 VQRLAEDDGTHA 139 >gi|83310845|ref|YP_421109.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945686|dbj|BAE50550.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 167 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 57/134 (42%), Positives = 83/134 (61%), Gaps = 14/134 (10%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL Sbjct: 28 APNPVDVHVGGRMRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVL 87 Query: 67 ESPISFFFDVS-------------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + PIS+FFD + D + + L+L R + ++ + Sbjct: 88 DVPISYFFDDMADQVQAQSPVNIIKGSAEPSETPAGFEPDPMMKRETLELVRAYYRVPEQ 147 Query: 114 KVRQKIIELVRSIV 127 + R++I +L++S+ Sbjct: 148 Q-RRRIYDLIKSMA 160 >gi|83311372|ref|YP_421636.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946213|dbj|BAE51077.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 155 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 59/129 (45%), Positives = 80/129 (62%), Gaps = 13/129 (10%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL Sbjct: 16 APNPVDVHVGGRMRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVL 75 Query: 67 ESPISFFFDVSPTVCSDIS-------------SEENNVMDFISTPDGLQLNRYFIQIDDV 113 + P+S+FFD S D ++ + L+L R + I D Sbjct: 76 DVPVSYFFDDMADGVQAQSPVNIIKGSVGLSEEPATFEADPMTKRETLELVRAYYNITDP 135 Query: 114 KVRQKIIEL 122 +VR+++ EL Sbjct: 136 QVRKRVYEL 144 >gi|110679288|ref|YP_682295.1| Cro/CI family transcriptional regulator putative [Roseobacter denitrificans OCh 114] gi|109455404|gb|ABG31609.1| transcriptional regulator, Cro/CI family, putative [Roseobacter denitrificans OCh 114] Length = 125 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 3/124 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKRIR RR ++GM+Q+KL EC+GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MAHLVDVHVGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ++FFF+ + E + D + + + L R + I + + R+++ EL R Sbjct: 61 DVDVAFFFEGLREEAGKDAPEPTSSVPADMMGDKEAMDLVRSYYAIPENQ-RRRLFELAR 119 Query: 125 SIVS 128 + Sbjct: 120 VLSD 123 >gi|126727971|ref|ZP_01743794.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126702744|gb|EBA01854.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 122 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKR+R RR ++GM+Q++L E +GI FQQ+QKYE G+NR+ ASRL I+E L Sbjct: 1 MKHPVDVHVGKRVRHRRWMVGMTQQQLAEKVGIKFQQIQKYETGMNRISASRLWAIAENL 60 Query: 67 ESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ISFFF+ + E + S + L+L R + I + + R+++ EL R Sbjct: 61 DVQISFFFEGLEGNEKASDQKFEGMPENVFSDKEALELVRCYYAIPENQ-RKRLFELARV 119 Query: 126 IVS 128 + + Sbjct: 120 LSA 122 >gi|163733431|ref|ZP_02140874.1| transcriptional regulator, Cro/CI family, putative [Roseobacter litoralis Och 149] gi|161393219|gb|EDQ17545.1| transcriptional regulator, Cro/CI family, putative [Roseobacter litoralis Och 149] Length = 125 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 3/124 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKRIR RR ++GM+Q+KL EC+GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MAHLVDVHVGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ++FFF+ + E + D + + + L R + I + + R+++ EL R Sbjct: 61 DVDVAFFFEGLREEAGKDAPEPASSVPADMMGDKEAMDLVRSYYAIPENQ-RRRLFELAR 119 Query: 125 SIVS 128 + Sbjct: 120 VLSD 123 >gi|119384129|ref|YP_915185.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373896|gb|ABL69489.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 119 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 79/123 (64%), Gaps = 5/123 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G+NRV ASRL I++ + Sbjct: 1 MKHNVDVHVGKRIRHRRWMIGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDIAQAV 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ + E D ++ + LQL R + + + + R++I EL R + Sbjct: 61 DVPVSFFFEGLEDGHVHNAVE----GDILADKEALQLVRAYYAMPEAQ-RRQIFELARVL 115 Query: 127 VSS 129 + Sbjct: 116 SDA 118 >gi|46201366|ref|ZP_00055177.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 137 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 86/137 (62%), Gaps = 13/137 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI+VG R+RLRR ++GMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ P+ Sbjct: 1 MDIHVGGRVRLRRTLMGMSQEKLGESIGLTFQQVQKYERGANRIGASRLFDLSRVLDVPV 60 Query: 71 SFFFDVSPTVCSDIS-------------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 SFFFD + S + D ++ + L+L R + I D +VR+ Sbjct: 61 SFFFDDMAETVQEQSPVAVSRGASGLSEEPASFEADPMTKRETLELVRAYYAIIDPQVRR 120 Query: 118 KIIELVRSIVSSEKKYR 134 ++ +L +++ ++ + + Sbjct: 121 RVYDLAKALAATGETKK 137 >gi|329114990|ref|ZP_08243745.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] gi|326695433|gb|EGE47119.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] Length = 164 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 62/151 (41%), Positives = 90/151 (59%), Gaps = 22/151 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +D +VGKRIRLRR +LG+SQEKLGE LGITFQQ+QKYE+G NRVGASRL Sbjct: 13 MIQPHAAASAIDAHVGKRIRLRRTLLGLSQEKLGEALGITFQQIQKYERGANRVGASRLY 72 Query: 61 HISEVLESPISFFFD----------------------VSPTVCSDISSEENNVMDFISTP 98 HI+ L+ PISFFFD +P+ + + ++ + Sbjct: 73 HIACALDVPISFFFDDMHSAEVVSNKQAHFSETRKSFGAPSDKNVSVAPTSDTKNIFKKQ 132 Query: 99 DGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + L+L R + I D ++R+KI+EL++++ S Sbjct: 133 ETLELVRVYYSIPDAQMRRKILELMQTMSVS 163 >gi|222102467|ref|YP_002539506.1| transcriptional regulator [Agrobacterium vitis S4] gi|221739068|gb|ACM39801.1| transcriptional regulator [Agrobacterium vitis S4] Length = 138 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 56/128 (43%), Positives = 83/128 (64%), Gaps = 4/128 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + +D++VG RIRL+R++ GMSQ+ L E +G+TFQQVQKYE G NR+G+SRLQ ++ + Sbjct: 8 KASDVIDVHVGCRIRLQRVLKGMSQKALAEGVGVTFQQVQKYETGTNRIGSSRLQAVARI 67 Query: 66 LESPISFFFDVSPTVCSDISSEEN----NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P++FFF+ P S E + FI + +GL LN F +I D VR+K+I Sbjct: 68 LSVPVAFFFEDGPQSSSPSQLPEAGIGKEITRFIRSEEGLALNLAFTKIQDANVRRKVIG 127 Query: 122 LVRSIVSS 129 LV+++ Sbjct: 128 LVKTLAKE 135 >gi|332716362|ref|YP_004443828.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063047|gb|ADY66737.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 146 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 3/132 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K+P+P+D++VG +IR+RR LGMSQ L LGITFQQVQKYEKG NRVGASRLQ Sbjct: 1 MMQAKLPSPIDVHVGTQIRMRRKSLGMSQSALAGRLGITFQQVQKYEKGANRVGASRLQA 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+ VL +S F + + + N + F+++ +G LN+ F +I VR+ Sbjct: 61 IASVLGVDVSSLFANATPDVGNANPALGTINAMQSFVASNEGFSLNQAFARIKSATVRKS 120 Query: 119 IIELVRSIVSSE 130 I+ LV S+ ++E Sbjct: 121 IVALVTSLAATE 132 >gi|254461884|ref|ZP_05075300.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678473|gb|EDZ42960.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 135 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 3/124 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G++Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 11 MAHPVDVHVGKRIRHRRWLVGVTQQRLAETVGIKFQQIQKYETGANRVSASRLWDIAESL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 E +SFFF + I E+ + D ++ + L L R + I + + R+++ +L R Sbjct: 71 EVDVSFFFSGLQNEDAAIGDAESGAVPSDILNDKEALDLVRSYYAIPEEQ-RRRLFDLAR 129 Query: 125 SIVS 128 + Sbjct: 130 VLSD 133 >gi|15891368|ref|NP_357040.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15159757|gb|AAK89825.1| transcriptional regulator, HTH family [Agrobacterium tumefaciens str. C58] Length = 145 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 3/128 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+P+P+D++VG +IR+RR LGMSQ L LGITFQQVQKYEKG NRVGASRLQ I+ + Sbjct: 4 KLPSPIDVHVGTQIRMRRKSLGMSQSALAGRLGITFQQVQKYEKGANRVGASRLQAIASI 63 Query: 66 LESPISFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L +S F + N + F+++ +G LN+ F +I V VR+ I+ L Sbjct: 64 LGVEVSSLFANATPDGGAANPALGTINAMQTFVASNEGFSLNQAFSRIKSVAVRRSIVAL 123 Query: 123 VRSIVSSE 130 V S+ +SE Sbjct: 124 VTSLAASE 131 >gi|254449883|ref|ZP_05063320.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198264289|gb|EDY88559.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 122 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 6/125 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR + G +Q+ L + +GI FQQ+QKYE G+NRV ASRL I+ L Sbjct: 1 MKHPVDVHVGKRIRHRRWVSGTTQQHLADQVGIKFQQIQKYETGMNRVSASRLWDIAHAL 60 Query: 67 ESPISFFFDVSPT--VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++FFF+ + DI D ++ + L L R + I + + R+++ +L R Sbjct: 61 GVEVAFFFEGLEGNLIGKDIGG---MPSDILTDKEALDLLRSYYAIPENQ-RRRLFDLAR 116 Query: 125 SIVSS 129 + + Sbjct: 117 VLSEA 121 >gi|118590494|ref|ZP_01547896.1| probable transcriptional regulator protein [Stappia aggregata IAM 12614] gi|118436957|gb|EAV43596.1| probable transcriptional regulator protein [Stappia aggregata IAM 12614] Length = 108 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 58/108 (53%), Positives = 81/108 (75%), Gaps = 5/108 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS- 86 MSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ VL+ P+SFFF+ +P + Sbjct: 1 MSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIATVLKVPVSFFFEDAPGTPDEAEGF 60 Query: 87 ----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + V+DF+S+ +GL LN+ F++I+D KVR++I++LVRS+ + Sbjct: 61 GETQPTSYVVDFLSSSEGLSLNKAFVRIEDPKVRRRIVDLVRSLAGDD 108 >gi|83311180|ref|YP_421444.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946021|dbj|BAE50885.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 175 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 60/132 (45%), Positives = 85/132 (64%), Gaps = 11/132 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D++VG RIRLRR +LGMSQEKLGECLG+TFQQVQKYE+G NRVGASRL +S VL+ Sbjct: 43 NPIDVHVGARIRLRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLFDLSRVLDV 102 Query: 69 PISFFFDVSPTVCSDISSEE---NNVM--------DFISTPDGLQLNRYFIQIDDVKVRQ 117 + +FF+ S E NV D ++ + L+L R + I+D KVR Sbjct: 103 RVGYFFEEISATAQAASPVEVIRGNVTKSVDVPDDDPMTKRETLELVRAYFSINDPKVRD 162 Query: 118 KIIELVRSIVSS 129 +++ + +++ + Sbjct: 163 QVLSMAKALGGA 174 >gi|83944525|ref|ZP_00956977.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83844631|gb|EAP82516.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 124 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+ VD++VG+RIR RR + GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+ L Sbjct: 1 MPHKVDVHVGQRIRQRRWLTGMTQQRLAELVGIKFQQIQKYETGANRVSASRLWDIAFAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +S FF+ +N+ D + + L R + I + + R+++ EL R Sbjct: 61 NVDVSHFFEGLEAEKPQPEKALDNIPADLSGDKEAMDLIRSYYAIPENQ-RRRLFELARV 119 Query: 126 IVS 128 + Sbjct: 120 LSD 122 >gi|329847816|ref|ZP_08262844.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842879|gb|EGF92448.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 138 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 83/122 (68%), Gaps = 1/122 (0%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN VD++VG R+RLRR +LG+SQ+ L + +TFQQVQKYE+G NR+ AS+L I++ L+ Sbjct: 14 PNKVDLHVGARVRLRRKLLGLSQDGLAARIDLTFQQVQKYERGSNRISASKLYEIAQALQ 73 Query: 68 SPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + FF+ TV ++ + E +V F+ TP+G++L F +I K+R++++ELV ++ Sbjct: 74 CKVEHFFEGLETVETEAPVQVEQDVNSFLCTPEGIELAGGFPKIRSAKLRRRVLELVNTL 133 Query: 127 VS 128 Sbjct: 134 AE 135 >gi|83311279|ref|YP_421543.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946120|dbj|BAE50984.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 201 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 59/132 (44%), Positives = 85/132 (64%), Gaps = 11/132 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D++VG RIRLRR +LGMSQEKLGECLG+TFQQVQKYE+G NRVGASRL +S VL+ Sbjct: 69 NPIDVHVGARIRLRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLFDLSRVLDV 128 Query: 69 PISFFFDVSPTVCSDISSEEN---------NVMD--FISTPDGLQLNRYFIQIDDVKVRQ 117 + +FF+ + S E +V D ++ + L+L R + I D KVR Sbjct: 129 RVGYFFEEISSTAQAASPVEVIRGNVTKAIDVADDNPMTKRETLELVRAYFSISDPKVRD 188 Query: 118 KIIELVRSIVSS 129 +++ + +++ + Sbjct: 189 QVLSMAKALGGA 200 >gi|16520003|ref|NP_444123.1| transcriptional regulator (Cro/CI family) [Sinorhizobium fredii NGR234] gi|2496761|sp|P55681|Y4WC_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4wC gi|2182692|gb|AAB91910.1| transcriptional regulator (Cro/CI family) [Sinorhizobium fredii NGR234] Length = 143 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 59/136 (43%), Positives = 88/136 (64%), Gaps = 7/136 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++ PN VD +VG+RIR RR MSQ LGE +G+TFQQVQKYEKGVNRVGA RLQ I Sbjct: 8 QTRRKPNAVDAHVGQRIRQRREWQNMSQTTLGEAIGVTFQQVQKYEKGVNRVGAGRLQQI 67 Query: 63 SEVLESPISFFFDV-------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 S+ L+ S+FF+ S+ + V++F+ + +G++L R F ++ D +V Sbjct: 68 SKALKVEPSYFFEDTLNKIRSEERSASNQINIPPEVVEFVVSKEGIELIRAFSRVGDYRV 127 Query: 116 RQKIIELVRSIVSSEK 131 R++I+ LV+S+ + E+ Sbjct: 128 RRRIVMLVKSLGAHER 143 >gi|197103164|ref|YP_002128542.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480440|gb|ACG79967.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 171 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 5/140 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P+P+D++VG R+RLRR LG++Q+ L E L +TFQQVQKYE+G NR+ AS L Sbjct: 16 MARADTGPDPIDVHVGLRVRLRRKALGLTQQSLAEALDLTFQQVQKYERGANRISASTLF 75 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE-----ENNVMDFISTPDGLQLNRYFIQIDDVKV 115 IS+VLE P+S+FFD + + D + P+G L F+ I + Sbjct: 76 RISQVLEVPVSYFFDGLHDPAKVAGERFAQVYDTVLQDLLLEPNGPALAEAFLSIRRRGI 135 Query: 116 RQKIIELVRSIVSSEKKYRT 135 R+ + +LVR+I ++++ + Sbjct: 136 RKSVTDLVRAIAANDEAGQV 155 >gi|167646240|ref|YP_001683903.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348670|gb|ABZ71405.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 136 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 49/127 (38%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD++VG+RIRLRR + G SQ ++ + LG+TFQQ+QKYE+G NR+ AS+LQ ++ L Sbjct: 6 PHPVDLHVGQRIRLRRKLAGASQTQVADALGLTFQQLQKYERGTNRISASKLQALALHLR 65 Query: 68 SPISFFFDVSPTVCSDISS---EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 PI++FF+ ++ ++ + V F+++ +G++L F +I + R +I+ LVR Sbjct: 66 VPINWFFEGLEEPTAEDAAINRRQTAVDAFLASREGVELALAFPRIGSGQ-RNQILALVR 124 Query: 125 SIVSSEK 131 ++ + E+ Sbjct: 125 TLAAEEE 131 >gi|328545923|ref|YP_004306032.1| transcriptional regulator protein [polymorphum gilvum SL003B-26A1] gi|326415663|gb|ADZ72726.1| Probable transcriptional regulator protein [Polymorphum gilvum SL003B-26A1] Length = 109 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 55/108 (50%), Positives = 82/108 (75%), Gaps = 5/108 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI--- 84 MSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ +L+ P++FFF+ +P + Sbjct: 1 MSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIATILKVPVAFFFEDAPGSPEEAEGF 60 Query: 85 --SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + V+DF+S+ +GL LN+ F++I+D KVR++I++LVR++ + Sbjct: 61 GEAQPTSYVVDFLSSSEGLSLNKAFVRIEDPKVRRRIVDLVRALAGDD 108 >gi|310816677|ref|YP_003964641.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308755412|gb|ADO43341.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 119 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 5/123 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD+ VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+ L Sbjct: 1 MAHTVDVYVGKRIRQRRWLIGMTQQQLAEHVGIKFQQIQKYETGANRVSASRLWEIAHAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + IS+F++ + ++E++ + + + + ++L R + I + + R+ I EL R + Sbjct: 61 GTSISYFYEGM----NAAATEDSTLNEELWGREAMELLRSYYAIPEDQ-RRHIFELARVL 115 Query: 127 VSS 129 + Sbjct: 116 SDA 118 >gi|209963989|ref|YP_002296904.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209957455|gb|ACI98091.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 156 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 55/127 (43%), Positives = 86/127 (67%), Gaps = 3/127 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+DI+VG+R+RLRR +LG+SQE LGE +GITFQQ+QKYE+G NR+ ASRL ++S+VL Sbjct: 25 PNPIDIHVGQRLRLRRTLLGLSQETLGEAVGITFQQLQKYERGANRISASRLFNLSQVLG 84 Query: 68 SPISFFFDVSPTVCSDI---SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P++FFF+ P + E + ++ + L+L R + +I D VR++ +LV+ Sbjct: 85 VPVTFFFEDLPASGPEAPLDGGSETQEFESMARRETLELVRAYYRIPDEGVRRRAFDLVK 144 Query: 125 SIVSSEK 131 ++ + Sbjct: 145 ALAGEPE 151 >gi|58039234|ref|YP_191198.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58001648|gb|AAW60542.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 212 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 53/174 (30%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PVD++VG RIRLRR ++G+SQEKLGE LG+TFQQ+QKYE+G NRVGASRL +++VL+ P Sbjct: 35 PVDVHVGNRIRLRRTLMGLSQEKLGEALGLTFQQIQKYERGANRVGASRLYDLAQVLDVP 94 Query: 70 ISFFFDVSPTVCSDISSEEN---------------------------------------- 89 I FFFD S Sbjct: 95 IGFFFDDMQEARPSAPSSAPRPFPGSAPTFNPAFGQASAAQAPVPGFAETQSAFGAPPPR 154 Query: 90 -------------NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + S + + L R + +I D VR+++++L+RS+ ++ Sbjct: 155 PAAPPPRLFDLPVDEAALFSRRETVDLVRSYYRIPDPAVRKRMLDLIRSLGPAD 208 >gi|294084637|ref|YP_003551395.1| putative transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664210|gb|ADE39311.1| Predicted transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] Length = 155 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 12/133 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD++VGKR+RLRR +LGMSQE+LG L ITFQQVQKYE+G NR+ ASRL I ++L+ Sbjct: 19 NAVDMHVGKRVRLRRTLLGMSQEQLGTELNITFQQVQKYERGANRISASRLWDIGQILDV 78 Query: 69 PISFFFDVSPTVCSDISSE------------ENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 PI++FFD S + + D ++ + L+L R + I+ VR Sbjct: 79 PINYFFDDMTENTMQSSPRRISRGGEILDLVDEQIKDPMARRETLELVRSYYSIEKPLVR 138 Query: 117 QKIIELVRSIVSS 129 ++I E+V+SI ++ Sbjct: 139 KRISEMVKSIATT 151 >gi|288958165|ref|YP_003448506.1| transcriptional regulator [Azospirillum sp. B510] gi|288910473|dbj|BAI71962.1| transcriptional regulator [Azospirillum sp. B510] Length = 155 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 6/128 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+DI+VG R+RLRR +LG+SQEKLGE +GITFQQ+QKYE+G NR+ ASRL ++S+VL Sbjct: 21 PNPIDIHVGARLRLRRTLLGLSQEKLGEAVGITFQQLQKYERGSNRISASRLYNLSQVLG 80 Query: 68 SPISFFFDVSPTVCSDISS------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P+S+FFD P+ + E + + ++ + L+L R + +I+D VR++ + Sbjct: 81 VPVSYFFDDMPSPDQITAETPSESMSETDEFESMARRETLELVRAYYRIEDPGVRKRTFD 140 Query: 122 LVRSIVSS 129 L++++ Sbjct: 141 LLKALGGD 148 >gi|190404401|ref|YP_001961032.1| rcorf57 [Agrobacterium rhizogenes] gi|158322197|gb|ABW33614.1| rcorf57 [Agrobacterium rhizogenes] Length = 163 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 10/133 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P+D+ VG +R GMSQ L E LG+TFQQVQKYEKG NRVGASRL +++ + Sbjct: 33 KAPSPIDVEVGASVR------GMSQSTLAEALGVTFQQVQKYEKGTNRVGASRLLNVATL 86 Query: 66 LESPISFFFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P+S+FFD + E + F+ T +G LN F +I +R++++ Sbjct: 87 LGVPVSYFFDSQSRDGKPDGLTGTGAEMELSAFLDTDEGRDLNVAFARIARPALRRQVLS 146 Query: 122 LVRSIVSSEKKYR 134 LV+++ +++ K Sbjct: 147 LVKAMAATDVKGS 159 >gi|222109145|ref|YP_002551410.1| transcriptional regulator Cro/CI family [Agrobacterium vitis S4] gi|221738419|gb|ACM39284.1| transcriptional regulator Cro/CI family [Agrobacterium vitis S4] Length = 141 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ VD+ VG+ IR RRMI G+SQ LG +G+TFQQVQKYEKG NRV AS L I+ Sbjct: 2 KDEPHAVDVAVGRAIRKRRMINGVSQSDLGARIGVTFQQVQKYEKGTNRVSASMLMEIAC 61 Query: 65 VLESPISFFFDVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L + FFD + F T + + LN+ F QI+D +R+KI++LV Sbjct: 62 ALHVDVRSFFDGIDAPSGKEPLHHTATPAAFSITRETVALNQAFAQINDALLRRKIVDLV 121 Query: 124 RSIVSSEKKYRTIEEECM 141 R++ SS T E+E + Sbjct: 122 RAVASS---SSTSEDELL 136 >gi|254559382|ref|YP_003066477.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266660|emb|CAX22437.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 158 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 4/126 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D VG+RI++ R G++Q LG+ +G+TFQQVQKYE G+NRVGASRL I+ V Sbjct: 33 KRATDLDRLVGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLSDIARV 92 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE +S F+D D + V F+ T + L R F +I+D ++R++++ +VR+ Sbjct: 93 LEVRVSSFYDGDEGEGEDRA----EVFGFLRTHGAIDLLRAFSEIEDDQLRREVLAIVRT 148 Query: 126 IVSSEK 131 + E+ Sbjct: 149 VARVEQ 154 >gi|46200999|ref|ZP_00056012.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 133 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 9/124 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R+RLRR ++G+SQE LGE LG+TFQQ+QKYE+G NR+GASRL +S LE P+ + Sbjct: 1 MHVGSRLRLRRTLMGLSQEALGEALGLTFQQIQKYERGANRIGASRLFDLSRALEVPVEY 60 Query: 73 FFDVSPTVCSDIS---------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F+D S +D +S + L L R + +I D+ VR+++ EL Sbjct: 61 FYDEMSADVMAASPRHMVRATEEPAPQRIDPMSKRETLDLVRTYYKIGDLNVRKRVYELA 120 Query: 124 RSIV 127 R++ Sbjct: 121 RALA 124 >gi|86360708|ref|YP_472596.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86284810|gb|ABC93869.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 134 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 83/134 (61%), Gaps = 1/134 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHAVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L + FFD T + + +F+ + +G+ LN F I + +R+KI++LV+ Sbjct: 62 ALNVDVRTFFDDLSTPVT-ANDNPAPSEEFVISREGVLLNAAFFSIKNEALRKKILKLVQ 120 Query: 125 SIVSSEKKYRTIEE 138 +I +E+ E Sbjct: 121 AIAHTEQVDGEAAE 134 >gi|209546420|ref|YP_002278310.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539277|gb|ACI59210.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 134 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 86/136 (63%), Gaps = 5/136 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHSVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L+ + FFD +P +D + +FI + +G+ LN F I + +R+KI++L Sbjct: 62 ALKVDVRTFFDDLSAPDTANDNPAPSE---EFIISREGVLLNAAFFSIKNEALRKKILKL 118 Query: 123 VRSIVSSEKKYRTIEE 138 V++I +E+ E Sbjct: 119 VQAIAHTEQLDGEAAE 134 >gi|116255803|ref|YP_771636.1| HTH family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260451|emb|CAK03555.1| putative HTH family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 134 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 84/134 (62%), Gaps = 1/134 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHSVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L+ + FFD T + + +F+ + +G+ LN F I + +R+KI++LV+ Sbjct: 62 ALKVDVRTFFDDLSTPDN-ANDNPAPSEEFVISREGVLLNAAFFSIKNEALRKKILKLVQ 120 Query: 125 SIVSSEKKYRTIEE 138 +I +E+ E Sbjct: 121 AIAHTEQVESEAAE 134 >gi|241667081|ref|YP_002985165.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862538|gb|ACS60203.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 134 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 85/134 (63%), Gaps = 1/134 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHSVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L+ + FFD T + + +F+ + +G+ LN F I + +R+KI++LV+ Sbjct: 62 ALKVDVRTFFDDLSTPDN-ANDNPAPSEEFVISREGVLLNAAFFSIKNEALRKKILKLVQ 120 Query: 125 SIVSSEKKYRTIEE 138 +I ++E+ E Sbjct: 121 AIANTEQLDTEAAE 134 >gi|190895672|ref|YP_001985964.1| transcriptional regulator Cro/CI family [Rhizobium etli CIAT 652] gi|218658231|ref|ZP_03514161.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli IE4771] gi|190699617|gb|ACE93701.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] gi|327194885|gb|EGE61716.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CNPAF512] Length = 134 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 86/136 (63%), Gaps = 5/136 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHAVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L+ + FFD +P +D + +F+ + +G+ LN F I + +R+KI++L Sbjct: 62 ALKVDVRTFFDDLSTPDTANDNPAPSE---EFVISREGVLLNAAFFSIKNEALRKKILKL 118 Query: 123 VRSIVSSEKKYRTIEE 138 V++I +E+ E Sbjct: 119 VQAIAHTEQMDGEAAE 134 >gi|218512667|ref|ZP_03509507.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] Length = 108 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 55/103 (53%), Positives = 76/103 (73%), Gaps = 6/103 (5%) Query: 33 LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI------SS 86 L + LGITFQQ+QKYEKG NRVGASRLQ+IS +L P+SFFF+ +P S +S Sbjct: 2 LAKALGITFQQIQKYEKGTNRVGASRLQNISSILNVPVSFFFEDAPGEHSGAIGGMAEAS 61 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 N V+DF+S+ +GLQLNR F++I D KVR+K++ELV+++ + Sbjct: 62 SSNYVVDFLSSSEGLQLNRAFVKISDPKVRRKVVELVKALAAE 104 >gi|167645114|ref|YP_001682777.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347544|gb|ABZ70279.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 120 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 80/117 (68%), Gaps = 5/117 (4%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR +LG+SQE L + LG+TFQQVQKYE+G NRV AS+L I++ L+ P+S+FFD Sbjct: 1 MRRKMLGVSQEALADALGLTFQQVQKYERGANRVSASKLYEIAKTLQVPVSYFFDGLADP 60 Query: 81 CSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ ++ E V +F++TP+GL+L F +I +VR+++++LVR++ E + Sbjct: 61 MTNDVDEVGAAAERVVTEFLNTPEGLELAEMFPKIGRGRVRRQVLDLVRAMAEDETR 117 >gi|197106910|ref|YP_002132287.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480330|gb|ACG79858.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 144 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 53/125 (42%), Positives = 84/125 (67%), Gaps = 1/125 (0%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD +VG RIR+RR LGMSQE+L E +G+TFQQVQKYE+ NRV AS+L ++ L+ Sbjct: 16 PNPVDRHVGLRIRMRRKELGMSQERLAEAIGLTFQQVQKYERATNRVSASKLFEMARALQ 75 Query: 68 SPISFFFDVSPTVC-SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + I++F++ + S + V F+ + DG++L F +I +VR++I++LVR++ Sbjct: 76 TSIAYFYEGLEEAGAGEASPPSDEVQTFLMSHDGMELAHAFPRIRQARVRRRILDLVRAV 135 Query: 127 VSSEK 131 + + Sbjct: 136 AETPE 140 >gi|218678050|ref|ZP_03525947.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 125 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 5/111 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDGYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQ 109 EVL + SFFF+ + D+ + + V +F+ T +GL LNR F++ Sbjct: 62 EVLHTSPSFFFEQENSEPLTLQGLDLPANTDPVAEFLRTKEGLVLNRAFLR 112 >gi|83594927|ref|YP_428679.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577841|gb|ABC24392.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 156 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 56/144 (38%), Positives = 86/144 (59%), Gaps = 16/144 (11%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G K P+PVD++VG+R+RLRR +LGMSQE+L +G+TFQQ+QKYE+G NRV ASRL I Sbjct: 13 GINKSPDPVDVHVGRRLRLRRTLLGMSQEQLANAVGVTFQQIQKYERGSNRVSASRLYDI 72 Query: 63 SEVLESPISFFFDVS-------------PTVCSDISSE---ENNVMDFISTPDGLQLNRY 106 S+VL P++FFF+ P + SE D + + L+L R Sbjct: 73 SKVLGVPVAFFFEDIGDEVTSARLAPIVPDITGSGLSEPAIPAYEQDPLQKNETLELIRA 132 Query: 107 FIQIDDVKVRQKIIELVRSIVSSE 130 + ++ VR++ ++L++S+ + Sbjct: 133 YWRLPTDTVRKRALDLLKSLSGRD 156 >gi|170740688|ref|YP_001769343.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194962|gb|ACA16909.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 134 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 4/123 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 3 KQTTEVDRLVGIRITALRKAKGLSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARL 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ SD + NV F+ST + + R ++QI+D ++R++++ +VRS Sbjct: 63 LEVPVSAFFEDP----SDTQGNDENVFGFLSTQGAIDVLRAYVQIEDDQLRREVLAIVRS 118 Query: 126 IVS 128 Sbjct: 119 AAR 121 >gi|114571474|ref|YP_758154.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114341936|gb|ABI67216.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 128 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 59/123 (47%), Positives = 85/123 (69%), Gaps = 2/123 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P +D +VG R+RLRR +L MSQ +LGE LG+TFQQVQKYE+G NR+GASRL ++++V E Sbjct: 6 PTSIDQHVGARLRLRRSLLEMSQSELGEKLGVTFQQVQKYERGTNRIGASRLFNVAKVTE 65 Query: 68 SPISFFFDVSPTVCSDI--SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 P+S+FF+ S + + + DFI++PDGL L F I D VR+++I+L+RS Sbjct: 66 VPVSYFFEGLEEDGSSELKGGDSDTLYDFIASPDGLALASAFAGIKDQTVRRRVIDLLRS 125 Query: 126 IVS 128 + Sbjct: 126 LAD 128 >gi|220922145|ref|YP_002497446.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946751|gb|ACL57143.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 134 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 4/123 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 3 KQTTEVDRLVGIRITALRKAKGLSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARL 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ +D + ++NV F+ST + + R ++QI+D ++R++++ +VRS Sbjct: 63 LEVPVSAFFEEP----NDAAGRDDNVFGFLSTQGAVDILRAYVQIEDDQLRREVLAIVRS 118 Query: 126 IVS 128 Sbjct: 119 AAR 121 >gi|83859888|ref|ZP_00953408.1| DNA-binding protein, putative [Oceanicaulis alexandrii HTCC2633] gi|83852247|gb|EAP90101.1| DNA-binding protein, putative [Oceanicaulis alexandrii HTCC2633] Length = 130 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 48/121 (39%), Positives = 80/121 (66%), Gaps = 2/121 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D +VGKRIR RR +LG++Q++L + +GI FQQ+QKYE G NRV ASRL ++E L Sbjct: 1 MTNAIDHHVGKRIRRRRRLLGLTQQQLAQSVGIRFQQIQKYESGANRVSASRLFELAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + P+ +F++ + E EN D +S + L L R + ++++ + R++++EL RS Sbjct: 61 DVPVQYFYEGLQGTGESAAPEGENVAADVLSQKETLDLVRAYYKLNE-RPRRRLLELARS 119 Query: 126 I 126 + Sbjct: 120 L 120 >gi|218532679|ref|YP_002423495.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218524982|gb|ACK85567.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 134 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 4/130 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K D VG+RI + R G+SQ LG +G+TFQQVQKYE G+NRVGASRL I+ V Sbjct: 9 KRATEQDRIVGERIHVLRKSKGLSQTALGSAIGVTFQQVQKYENGMNRVGASRLSDIARV 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L ++ FF+ + E+ + P + L R FI I+D ++R++++ LVRS Sbjct: 69 LGVSVAVFFEEGDAA----APEKTEAFGLLHAPGAVDLLRAFITIEDDQLRREVLALVRS 124 Query: 126 IVSSEKKYRT 135 E+ Sbjct: 125 AARMEQDQGA 134 >gi|163849609|ref|YP_001637652.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163661214|gb|ABY28581.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 135 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 3/134 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K D+ VG RI+ R G+SQ LG +G++FQQ+QKYE G NRVGA RL Sbjct: 5 SASPKQATKEDVIVGLRIQTLRKSRGISQTALGIAIGVSFQQIQKYEIGANRVGAGRLSD 64 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ VL +P+S FF+ + E+ V D + P + L FI I+D ++R++++ Sbjct: 65 IARVLGAPVSVFFEEGDAA---AAQEKTEVFDLLRAPGAVDLLNAFITIEDDRLRREVLA 121 Query: 122 LVRSIVSSEKKYRT 135 LVRS E+ + Sbjct: 122 LVRSAARMEQDHGA 135 >gi|218532713|ref|YP_002423529.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525016|gb|ACK85601.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 135 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 52/124 (41%), Positives = 76/124 (61%), Gaps = 3/124 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D VG+RI++ R G+SQ LG LG+TFQQ+QKYE GVNRVGASRL ++ VLE P+S Sbjct: 15 DRLVGERIKVLRKSKGISQTALGSALGVTFQQIQKYENGVNRVGASRLSEVARVLEVPVS 74 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF+ + + V +F+ + L FI I+D ++R++++ LVR ++ Sbjct: 75 TFFE---EGGGLVEQGQQEVFEFLRVRGAVDLLNAFIAIEDDQLRREVLALVRCAARMKQ 131 Query: 132 KYRT 135 K RT Sbjct: 132 KQRT 135 >gi|188582991|ref|YP_001926436.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346489|gb|ACB81901.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 3/118 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D VG RI R G+SQ LG +G+TFQQVQKYEKG+NRVGA RL I+ +LE P+S Sbjct: 15 DRIVGLRITTLRKARGLSQTALGTAVGVTFQQVQKYEKGLNRVGAGRLSEIAHLLEVPVS 74 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF+ + ++ V+DF+ + L R F I+D ++R+K++ +VRS+ + Sbjct: 75 AFFE---EADGATAQKQTEVVDFLRVHGAVDLLRAFATIEDDQLRRKVLAIVRSVART 129 >gi|114570052|ref|YP_756732.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114340514|gb|ABI65794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 136 Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 45/128 (35%), Positives = 76/128 (59%), Gaps = 1/128 (0%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P +D +VG R+R+ R+ +SQE LGE G++F Q+QKYE+G R+ ASRL ++ Sbjct: 7 GHQFPLQIDQHVGARLRVGRIEFCLSQEALGERFGVSFHQIQKYERGAYRISASRLFVLA 66 Query: 64 EVLESPISFFFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L P+ FFFD SE+ ++ FI++ G+ L F +I + ++RQ++I+L Sbjct: 67 NALLVPVQFFFDGLDDDGPQSAGSEDTDLYRFIASSAGVTLALAFSRIGNHEIRQRVIDL 126 Query: 123 VRSIVSSE 130 V ++ + Sbjct: 127 VHALAKQD 134 >gi|170749530|ref|YP_001755790.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656052|gb|ACB25107.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 162 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 4/127 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R GMSQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 32 KQTTDVDRLVGIRITALRKARGMSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARL 91 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ S + + +V F+S ++L R + QI+D ++R+ ++ LVRS Sbjct: 92 LEVPVSAFFEESEPREN----AQEDVFGFLSAHGAIELLRAYAQIEDEQMRRDVLALVRS 147 Query: 126 IVSSEKK 132 + Sbjct: 148 AARLAQN 154 >gi|329848346|ref|ZP_08263374.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843409|gb|EGF92978.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 115 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 43/114 (37%), Positives = 73/114 (64%), Gaps = 3/114 (2%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD---VS 77 +RR +G+SQ+ LG+ +G+TFQQVQKYE+G NR+ AS+L HI +VL+ PI +FFD Sbjct: 1 MRRKFMGISQQVLGDSIGLTFQQVQKYERGSNRISASKLWHIGQVLKVPIDYFFDGFAGG 60 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 E + F++T +G++L F ++ K+R+K+++LV+++ + Sbjct: 61 EAPEDAPGGTEAKINAFLTTTEGIELAEVFPKVSGPKLRRKVLDLVKALADDSE 114 >gi|163850474|ref|YP_001638517.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|240137535|ref|YP_002962006.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254560007|ref|YP_003067102.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|163662079|gb|ABY29446.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|240007503|gb|ACS38729.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254267285|emb|CAX23117.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 142 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 3/123 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 4 KQTTDVDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLREIARL 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ + E+ V F+ + L R F I+D ++R++++ +VRS Sbjct: 64 LEVPVSAFFEEGDGA---AAQEQTEVFGFLRAHGAVDLLRAFATIEDDQMRREVLAIVRS 120 Query: 126 IVS 128 Sbjct: 121 AAR 123 >gi|167644985|ref|YP_001682648.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347415|gb|ABZ70150.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 149 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 83/133 (62%), Gaps = 9/133 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + P+ VDI+VG R+R+RR LG+SQ +L + +GITFQQ+QKYE+G NRV AS+L Sbjct: 1 MAADQEPHLVDIHVGARVRMRRKALGLSQTQLADSVGITFQQLQKYERGANRVSASKLYG 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMD--------FISTPDGLQLNRYFIQIDDV 113 ++ L++ +S+FF V ++EE + + F+ + +GL+L F QI Sbjct: 61 MAVTLQTSVSWFFQGLSAVDVANATEEQMLEEHRLKGLQRFLLSSEGLELASLFPQIPPT 120 Query: 114 KVRQKIIELVRSI 126 + RQ+++ L +S+ Sbjct: 121 Q-RQQLLALAKSL 132 >gi|163849608|ref|YP_001637651.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163661213|gb|ABY28580.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 134 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 4/126 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D VG+RI++ R G++Q LG+ +G+TFQQVQKYE G+NRVGASRL I+ V Sbjct: 9 KRATDLDRLVGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLSDIARV 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE +S F+D D + V F+ T + L R F +I+D ++R++++ +VR+ Sbjct: 69 LEVRVSSFYDGDEGEGEDRA----EVFGFLRTHGAIDLLRAFSEIEDDQLRREVLAIVRT 124 Query: 126 IVSSEK 131 + E+ Sbjct: 125 VARVEQ 130 >gi|218459687|ref|ZP_03499778.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 104 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 54/99 (54%), Positives = 74/99 (74%), Gaps = 6/99 (6%) Query: 37 LGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI------SSEENN 90 LGITFQQ+QKYEKG NRVGASRLQ+IS +L P+SFFF+ +P S +S N Sbjct: 2 LGITFQQIQKYEKGTNRVGASRLQNISSILNVPVSFFFEDAPGEHSGAIGGMAETSSSNY 61 Query: 91 VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 V+DF+S+ +GLQLNR F++I D KVR+K++ELV+++ + Sbjct: 62 VVDFLSSSEGLQLNRAFVKISDPKVRRKVVELVKALAAE 100 >gi|218529168|ref|YP_002419984.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218521471|gb|ACK82056.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 142 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 3/123 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 4 KQTTDVDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLREIARL 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ + E+ V F+ + L R F I+D ++R++++ +VRS Sbjct: 64 LEVPVSAFFEEGDGA---AAQEQTEVFGFLRAHGAVDLLRAFATIEDDQMRREVLAIVRS 120 Query: 126 IVS 128 Sbjct: 121 AAR 123 >gi|307315947|ref|ZP_07595440.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307322835|ref|ZP_07602141.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306891521|gb|EFN22401.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306898408|gb|EFN29102.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 144 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 56/133 (42%), Positives = 85/133 (63%), Gaps = 7/133 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P PVD++VG+RIR+RR+ + ++ L + +G+TFQQVQKYEKG NRVGASRLQ I++ Sbjct: 10 KGKPEPVDVHVGRRIRMRRIWMQVTLTALADAIGVTFQQVQKYEKGTNRVGASRLQQIAD 69 Query: 65 VLESPISFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 L +P+S+FF+ P + +++F S+ GL L R F QI D +VR Sbjct: 70 ALVAPVSYFFEDMPGAAPVGGDNRSGQKKLQPEIIEFASSDVGLALIRAFSQITDKRVRD 129 Query: 118 KIIELVRSIVSSE 130 +I+ LV+++ + Sbjct: 130 RILGLVKALAKQD 142 >gi|218510909|ref|ZP_03508787.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 157 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +++ +PVDI+VG+++R+RR+ +SQ +LG+ +G+++QQVQKYE G NR+ AS L I+ Sbjct: 24 SEQASHPVDIHVGQQLRIRRVHSNLSQSELGQKVGLSYQQVQKYESGKNRISASMLYEIA 83 Query: 64 EVLESPISFFFDVSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P+ FFD P I+ E + + F++T +G + +++ K+R + + Sbjct: 84 GGLNVPVGCFFDGLPQPGESATIAPEADERIAFLATAEGRRFVEEILRLP-PKLRTRTLA 142 Query: 122 LVRSIVSSEKKYRT 135 ++R+I E K Sbjct: 143 VIRAIAGDEDKAEE 156 >gi|188580238|ref|YP_001923683.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179343736|gb|ACB79148.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 3/123 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 4 KQTTDVDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLREIARL 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ + E+ V F+ + L R F I+D ++R++++ +VRS Sbjct: 64 LEVPVSAFFEEGDGA---AAQEQTEVFGFLRAHGAVDLLRAFASIEDDQMRREVLAIVRS 120 Query: 126 IVS 128 Sbjct: 121 AAR 123 >gi|304321344|ref|YP_003854987.1| DNA-binding protein [Parvularcula bermudensis HTCC2503] gi|303300246|gb|ADM09845.1| DNA-binding protein, putative [Parvularcula bermudensis HTCC2503] Length = 128 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 80/128 (62%), Gaps = 6/128 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P+D +VG+R+R RR +LGM+Q++L E +GI FQQ+QKYE G NRV ASRL ++E L Sbjct: 1 MAHPIDSHVGRRLRQRRSLLGMTQQRLAESVGIKFQQIQKYESGANRVSASRLWALAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD-----FISTPDGLQLNRYFIQIDDVKVRQKIIE 121 E P+S+FF+ + + S+ D ++ + + L R + + + R+++++ Sbjct: 61 EVPVSYFFEGLSSPEMEESTAAKAEADTISPEVLTNKETIDLIRAYYGLKE-GPRRRLLD 119 Query: 122 LVRSIVSS 129 L +++ + Sbjct: 120 LAKTLAGA 127 >gi|83591618|ref|YP_425370.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574532|gb|ABC21083.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 145 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 8/136 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G + D +VGKRIR RR++LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I Sbjct: 12 GPTNRASEADRHVGKRIRERRVMLGLSQQQMADMIGVTYQQAHKYERGINRISAGRLFEI 71 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++VL P+++FFD S+ S + L+L R F I + + ++ + +L Sbjct: 72 AQVLHVPVNYFFDGLDDEASETLSPRQRMC--------LELARNFAMIQNERHQEALSQL 123 Query: 123 VRSIVSSEKKYRTIEE 138 R++ + IEE Sbjct: 124 ARALAAQVSVVEVIEE 139 >gi|167647540|ref|YP_001685203.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167349970|gb|ABZ72705.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 140 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 44/104 (42%), Positives = 70/104 (67%), Gaps = 2/104 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD+ VG R+R+RR +LG+SQ +L + LGITFQQ+QKYE+G NR+ AS+L + +L Sbjct: 9 MAHPVDLYVGARLRIRRKVLGLSQTQLADALGITFQQIQKYERGANRISASKLYEAARLL 68 Query: 67 ESPISFFFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFI 108 +SP+++FFD + + + F++TP+GL+L F Sbjct: 69 QSPVAYFFDGLDDTAQNGLDDGFAQRMTQFVATPEGLELASLFP 112 >gi|170746516|ref|YP_001752776.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653038|gb|ACB22093.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 146 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 6/123 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D VG RI R G+SQ L LG++FQQVQKYE G NRVGA RLQ I+E Sbjct: 9 KQTTAIDHGVGSRIAFLRAANGLSQSALASALGVSFQQVQKYETGKNRVGAGRLQAIAER 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+S FF+ P +D + ++L R + QI D ++R+ ++ LV+S Sbjct: 69 LGVPVSSFFEPEPEATTDSGPA------LLRVAGAVELLRAYNQIADDQMRRDVLSLVKS 122 Query: 126 IVS 128 Sbjct: 123 AAR 125 >gi|218507453|ref|ZP_03505331.1| transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 111 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 5/111 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 L P+ FFF+ I E + + F+S+ +GL LN+ ++ ++R Sbjct: 64 LRVPVGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNK---RLSPSRIR 109 >gi|163794400|ref|ZP_02188372.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] gi|159180568|gb|EDP65089.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] Length = 157 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 11/132 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D++VG+R+RLRR +LGMSQE+LG+ L ITFQQVQKYE+G NR+ ASRL I ++L+ Sbjct: 21 NPIDVHVGRRVRLRRTLLGMSQEQLGDALNITFQQVQKYERGSNRISASRLWDIGQILDV 80 Query: 69 PISFFFDVSPT-----------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P+SFFFD E N D ++ + L+L R + I + +R+ Sbjct: 81 PVSFFFDDISDDTAAHSPRRMKAGGAKDEYEENPADPMARRETLELVRAYYSIKNPNLRK 140 Query: 118 KIIELVRSIVSS 129 +I E+V+S+ ++ Sbjct: 141 RITEMVKSVATA 152 >gi|57239584|ref|YP_180720.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|58579573|ref|YP_197785.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|38098396|gb|AAR10929.1| hypothetical transcriptional regulator [Ehrlichia ruminantium] gi|57161663|emb|CAH58593.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|58418199|emb|CAI27403.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] Length = 201 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 17/149 (11%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 53 PKSRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLA 112 Query: 64 EVLESPISFFFDVSPTVCSDIS-------------SEENNVMDF----ISTPDGLQLNRY 106 VL + +IS +EE V +F I + + L + R Sbjct: 113 SVLNVEVRDIMLKLQEDLKNISCGNDIVSTPSLKDNEEKFVPEFHDSKIDSKEVLMMVRA 172 Query: 107 FIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + I + KVR I LV+++ + K + Sbjct: 173 YTCIKNEKVRNIIYNLVKALSTDNKTSVS 201 >gi|315499301|ref|YP_004088105.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315417313|gb|ADU13954.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 125 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD++VG RIR RR +GMSQ L L +TFQQVQKYE+G NR+ AS++ + L Sbjct: 5 NKVDVHVGHRIRSRRKEIGMSQTDLANHLSLTFQQVQKYERGFNRISASKMHDAARALGV 64 Query: 69 PISFFFDVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 I +FF+ D S E +V F+ T +G +L+ +F ++ R+ ++ LVR +V Sbjct: 65 HIEYFFEGLDNETELDRSESEASVTQFLLTREGAELSSHFSKL-SANQRKGVLALVRMLV 123 >gi|58617626|ref|YP_196825.1| putative transcriptional regulator [Ehrlichia ruminantium str. Gardel] gi|58417238|emb|CAI28351.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str. Gardel] Length = 201 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 17/151 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 51 ATPKSRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQ 110 Query: 62 ISEVLESPISFFFDVSPTVCSDIS-------------SEENNVMDF----ISTPDGLQLN 104 ++ VL + +IS +EE V +F I + + L + Sbjct: 111 LASVLNVEVRDIMLKLQEDLKNISCGNDIVSTPSLKDNEEKFVPEFHDSKIDSKEVLMMV 170 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 R + I + KVR I LV+++ + K + Sbjct: 171 RAYTCIKNEKVRNIIYNLVKALSTDNKTSVS 201 >gi|144901303|emb|CAM78167.1| transcriptional regulator, Cro/CI family [Magnetospirillum gryphiswaldense MSR-1] Length = 131 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 75/131 (57%), Gaps = 8/131 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + N D +VG RIR RR++LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL Sbjct: 9 ISRPVNRANDTDRHVGTRIRERRIMLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLY 68 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I++VL P+S+FF+ + + + L+L R F I + K ++ + Sbjct: 69 EIAQVLGVPVSYFFEGLDNQRATDLTARQRMC--------LELARNFSSIQNEKHQEALS 120 Query: 121 ELVRSIVSSEK 131 ++ R++ ++E Sbjct: 121 QMARALAAAED 131 >gi|16126569|ref|NP_421133.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235351|ref|YP_002517788.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] gi|13423855|gb|AAK24301.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964524|gb|ACL95880.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] Length = 135 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 42/101 (41%), Positives = 70/101 (69%), Gaps = 1/101 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD+ VG R+R+RR ++G+SQ ++ + LGITFQQ+QKYE+G NR+ AS+L +++L++ Sbjct: 11 HPVDLYVGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQA 70 Query: 69 PISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFI 108 P+S+FF+ + + +F+STP+GL+L F Sbjct: 71 PVSYFFEGLEDTDGGVDDGFAQRMTEFVSTPEGLELASLFP 111 >gi|114799525|ref|YP_758842.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739699|gb|ABI77824.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 145 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 58/128 (45%), Positives = 82/128 (64%), Gaps = 4/128 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+P+ +D VG+ I +R L ++QEKLGE LG+TFQQVQKYEKGVNRV A RL I+ V Sbjct: 5 KLPSDIDRVVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYEIAGV 64 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMD----FISTPDGLQLNRYFIQIDDVKVRQKIIE 121 LE P+ FFFD + TV S+ +E +D + + + LQL F +I+D +R ++ Sbjct: 65 LEVPVEFFFDGADTVVSNGVAELAEDLDDTQLAVLSDEVLQLIEAFQKIEDAALRGSLLA 124 Query: 122 LVRSIVSS 129 VR+ S+ Sbjct: 125 TVRAAASA 132 >gi|114328663|ref|YP_745820.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316837|gb|ABI62897.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 184 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 14/137 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG RIR RR++LG+SQ++L + +G+T+QQ KYE+G+NR+ A RL IS VL PIS+F Sbjct: 53 HVGNRIRERRVMLGLSQQQLAQMIGVTYQQAHKYERGLNRISAGRLYQISHVLNVPISWF 112 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS----- 128 FD ++E L+L R F ID+ K ++ + ++ R++ + Sbjct: 113 FDG-------FATESKTADLTTRQRMCLELARNFAAIDNEKHQEALSQMARALAAQSVAN 165 Query: 129 --SEKKYRTIEEECMVE 143 ++ Y T EE E Sbjct: 166 KMAQDGYATALEESREE 182 >gi|99077913|ref|YP_611172.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99034856|gb|ABF61910.1| transcriptional regulator XRE family [Ruegeria sp. TM1040] Length = 125 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 10/124 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI+VGKRIR RR + +Q+ L E +G+ QQ+Q YE NRV ASRL IS+VL Sbjct: 1 MPHPVDIHVGKRIRTRRWTVDETQKYLAEKVGVKCQQIQNYEVASNRVSASRLWDISKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFIST----PDGLQLNRYFIQIDDVKVRQKIIEL 122 +++FF+ D E ++ +F T + + L + + +I + R ++L Sbjct: 61 GVDVTYFFEGF-----DPRQETSDTHEFHRTASQEKEAIALVQSYYKIPKHQ-RPIFLQL 114 Query: 123 VRSI 126 +S+ Sbjct: 115 AKSL 118 >gi|167645186|ref|YP_001682849.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347616|gb|ABZ70351.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 127 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 76/124 (61%), Gaps = 1/124 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D+ +GKR+R RR +LG +Q++L +G+ FQQ+QKYE G NR+ A+RL +SE L Sbjct: 1 MGNDIDVYLGKRLRRRRRLLGFTQQQLASTVGVRFQQIQKYECGANRISAARLWQLSEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+ +F+D + +S E + + + L L R + + + + R+++++L +S+ Sbjct: 61 EVPVGYFYDGLSDRTAKDASTEAEGGEMFARKETLDLVRAYYLLGE-RPRRRLLDLAKSL 119 Query: 127 VSSE 130 E Sbjct: 120 NGGE 123 >gi|83594572|ref|YP_428324.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577486|gb|ABC24037.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 149 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 11/139 (7%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + + VD +VG+R+R RR L + QE L +G++FQQ+QKYE+G NR+ ASRL I+ Sbjct: 11 DTRTIHHVDAHVGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDIA 70 Query: 64 EVLESPISFFFDVSP-----------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + L PI +FF ++ + D + L L + F + D Sbjct: 71 KALAVPIDYFFSDLERGDPRHDGALAEDMGRLAQGGSAPPDPLRLTQSLDLAQAFWALPD 130 Query: 113 VKVRQKIIELVRSIVSSEK 131 +RQ I L++++ S E Sbjct: 131 DGMRQSFIALLKAMSSFED 149 >gi|254295330|ref|YP_003061353.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043861|gb|ACT60656.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 132 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 4/133 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + VDI VGKR+R RR +LGM+Q+ L +G+ FQQ+QKYE G NR+ ASRL ++ L Sbjct: 1 MATDVDIYVGKRLRRRRRLLGMTQQDLASEIGVRFQQIQKYECGANRITASRLFDLANAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +S+FFD + + N D +S + L+L R + ++ + + R+++++L Sbjct: 61 TVNVSYFFDGLAPDGKQAPANDGNDTLSGDILSQKETLELVRAYYRLSE-RPRRRLLDLA 119 Query: 124 RSIVSSEKKYRTI 136 +++ K Sbjct: 120 KALEEDNKDQGAA 132 >gi|189184272|ref|YP_001938057.1| hypothetical protein OTT_1365 [Orientia tsutsugamushi str. Ikeda] gi|189181043|dbj|BAG40823.1| hypothetical protein OTT_1365 [Orientia tsutsugamushi str. Ikeda] Length = 146 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 83/133 (62%), Gaps = 11/133 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D+ V KR+++RR+ILG+SQ+KL E + ++ QQ+QKYEK NR+ + +L ++ +L+ Sbjct: 14 DSIDLYVSKRLKMRRVILGLSQKKLAEAVDVSIQQIQKYEKSTNRISSGKLYSLANLLKV 73 Query: 69 PISFFFDVSPT------VCSDISSEENNVMDFIST-----PDGLQLNRYFIQIDDVKVRQ 117 PI +FF+ + + + IS + +F+S + L L + F ++ + VR+ Sbjct: 74 PIGYFFENASSYTDCKNNVNTISVFAEDQENFLSDDTVTEKEVLNLIKAFNEVKNSHVRK 133 Query: 118 KIIELVRSIVSSE 130 KII+LV+SI + E Sbjct: 134 KIIDLVKSIKAME 146 >gi|148284085|ref|YP_001248175.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] gi|146739524|emb|CAM79234.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] Length = 146 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 83/133 (62%), Gaps = 11/133 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D+ V KR+++RR+ILG+SQ+KL E + ++ QQ+QKYEK NR+ + +L ++ +L+ Sbjct: 14 DSIDLYVSKRLKMRRVILGLSQKKLAEAVDVSIQQIQKYEKSTNRISSGKLYSLANLLKV 73 Query: 69 PISFFFDVSPT------VCSDISSEENNVMDFIST-----PDGLQLNRYFIQIDDVKVRQ 117 PI +FF+ + + + IS + +F+S + L L + F ++ + VR+ Sbjct: 74 PIGYFFENASSYTDCKNNVNTISIFAEDQENFLSDDTVTEKEVLNLIKAFNEVKNSHVRK 133 Query: 118 KIIELVRSIVSSE 130 KII+LV+SI + E Sbjct: 134 KIIDLVKSIKAME 146 >gi|83309880|ref|YP_420144.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944721|dbj|BAE49585.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 151 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 71/125 (56%), Gaps = 8/125 (6%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 N D +VG RIR RR++LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I++V Sbjct: 35 NRANDTDRHVGSRIRERRIMLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLFEIAQV 94 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FF++ S + L+L R F I + + ++ + +L R+ Sbjct: 95 LGVPVGFFYEGLENRRGSDLSARQRMC--------LELARNFTSITNERHQEALSQLARA 146 Query: 126 IVSSE 130 + + + Sbjct: 147 LAAED 151 >gi|88657852|ref|YP_507902.1| putative transcriptional regulator [Ehrlichia chaffeensis str. Arkansas] gi|88599309|gb|ABD44778.1| putative transcriptional regulator [Ehrlichia chaffeensis str. Arkansas] Length = 213 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 17/146 (11%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 68 TKIRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLA 127 Query: 64 EVLESPISFFFDVSPTVCSDIS-------------SEENNVMDF----ISTPDGLQLNRY 106 VL + +IS +EE + +F I + + L + R Sbjct: 128 SVLNVEVRDIMLKLQEDLKNISCDHTVASTSTLKDNEEKFIPEFHDSKIDSKEVLMMVRA 187 Query: 107 FIQIDDVKVRQKIIELVRSIVSSEKK 132 + I + KVR I LV+++ K+ Sbjct: 188 YTCIKNEKVRNIIYNLVKALSLDNKQ 213 >gi|16519652|ref|NP_443772.1| uncharacterized transcription regulator (Cro/CI family) [Sinorhizobium fredii NGR234] gi|2496579|sp|P55360|Y4AM_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4aM gi|2182302|gb|AAB91610.1| uncharacterized transcription regulator (Cro/CI family) [Sinorhizobium fredii NGR234] Length = 143 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 7/133 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + N VDI VG+RIR RR MSQ LGE +G+TFQQVQKYEKG NRVGA RLQ IS+ Sbjct: 10 RAKANAVDIYVGRRIRQRRRWQNMSQAALGEAIGVTFQQVQKYEKGSNRVGAGRLQQISD 69 Query: 65 VLESPISFFFDVSPTVCSDISSEENN-------VMDFISTPDGLQLNRYFIQIDDVKVRQ 117 LE S+FF+ P I N V++F ++ +G++L R F ++ ++ VR Sbjct: 70 ALEVHPSYFFEDMPDDTQSIGQGAPNQAYIPPEVIEFAASDEGVELIRAFSRVGNLNVRC 129 Query: 118 KIIELVRSIVSSE 130 +I++L++S+ + Sbjct: 130 RIVKLLKSLGEHD 142 >gi|68171793|ref|ZP_00545135.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa] gi|13511828|gb|AAC02808.2| hypothetical transcriptional regulator [Ehrlichia chaffeensis] gi|67998784|gb|EAM85494.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa] Length = 213 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 17/146 (11%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 68 TKIRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLA 127 Query: 64 EVLESPISFFFDVSPTVCSDIS-------------SEENNVMDF----ISTPDGLQLNRY 106 VL + +IS +EE + +F I + + L + R Sbjct: 128 SVLNVEVRDIMLKLQEDLKNISCDHTVASTSTLKDNEEKFIPEFHDSKIDSKEVLMMVRA 187 Query: 107 FIQIDDVKVRQKIIELVRSIVSSEKK 132 + I + KVR I LV+++ K+ Sbjct: 188 YTCIKNEKVRNIIYNLVKALSLDNKQ 213 >gi|222087820|ref|YP_002546358.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725268|gb|ACM28424.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 159 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 82/136 (60%), Gaps = 5/136 (3%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G+ ++ +PVD +VG+++R+ R+ +SQ +LG +G+++QQVQKYE G NR+ AS L I Sbjct: 23 GDGQMIHPVDRHVGQQLRILRIHSNLSQTELGHEVGLSYQQVQKYESGKNRISASMLYVI 82 Query: 63 SEVLESPISFFFDVSPTVCSDIS----SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + L P++ FFD P S+++ E + + +I+T +G + +++ ++R + Sbjct: 83 ASRLNVPVNRFFDGLPPSESEVTDGIVPEVDERIAYIATAEGRRFVEEILRLP-PRLRTR 141 Query: 119 IIELVRSIVSSEKKYR 134 + +++ + E++ Sbjct: 142 TLAVIKVLAGDEEETA 157 >gi|188580819|ref|YP_001924264.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179344317|gb|ACB79729.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 3/130 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K D VG+RI R G+SQ LG +G+TFQQVQKYE+G NRVGA RLQ I+ + Sbjct: 9 KRATEQDRLVGERIVALRKARGLSQAALGAAVGVTFQQVQKYERGTNRVGAGRLQEIARL 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FFD D+ + +V F+ + L R F I+D ++R++++ +VRS Sbjct: 69 LEVPVSAFFDEGNGAAGDM---QADVFGFLRIHGAIDLLRAFATIEDDQLRREVLAIVRS 125 Query: 126 IVSSEKKYRT 135 ++ R+ Sbjct: 126 ASRLGREERS 135 >gi|21492894|ref|NP_659969.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|190894068|ref|YP_001984362.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|21467319|gb|AAM54982.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|190699729|gb|ACE93812.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 254 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 15/135 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 117 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 176 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P+S FF+ P T I +E + + +IST +G +L IDD +VR ++ Sbjct: 177 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRV 230 Query: 120 IELVRSIVSSEKKYR 134 + LV SIV E + + Sbjct: 231 VALVSSIVDEEMEEQ 245 >gi|126729205|ref|ZP_01745019.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126710195|gb|EBA09247.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 102 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L+ P+SFFF+ +++++ Sbjct: 1 MTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDIADALDVPVSFFFEGIENENAEVAAG 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ D + + L L R + I + + R+++ EL R + Sbjct: 61 DHVPADILGDKEALDLVRSYYAIPENQ-RRRLFELARVLSD 100 >gi|295690474|ref|YP_003594167.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432377|gb|ADG11549.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 135 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 41/101 (40%), Positives = 70/101 (69%), Gaps = 1/101 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD+ VG R+R+RR ++G+SQ ++ + LGITFQQ+QKYE+G NR+ AS+L +++L++ Sbjct: 11 HPVDLYVGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQA 70 Query: 69 PISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFI 108 P+S+F++ + + +F+STP+GL+L F Sbjct: 71 PVSYFYEGLEDTDGGLDDGFAQRMTEFVSTPEGLELAGLFP 111 >gi|27377896|ref|NP_769425.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27351042|dbj|BAC48050.1| bll2785 [Bradyrhizobium japonicum USDA 110] Length = 134 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 55/119 (46%), Positives = 83/119 (69%), Gaps = 6/119 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI +GKRIRLRR+ + +SQ +LGE LG++FQQVQKYEKGVNRVGA+RLQ I+ L+ P++ Sbjct: 21 DIELGKRIRLRRVEMKISQAELGEKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 80 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF+D D + E + F+ + L+L R + +I D V+++++ L+ SI ++E Sbjct: 81 FFYDG------DNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSLMESIAANE 133 >gi|148254259|ref|YP_001238844.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406432|gb|ABQ34938.1| putative transcriptional regulatory protein [Bradyrhizobium sp. BTAi1] Length = 131 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 55/120 (45%), Positives = 83/120 (69%), Gaps = 6/120 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI +GKRIRLRR+ +SQ +LGE LG++FQQVQKYEKGVNRVGA+RLQ I+ L+ P++ Sbjct: 18 DIELGKRIRLRRVEQKISQAELGEKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 77 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF+D D + E + F+ + L+L R + +I D V+++++ L+ SI ++E+ Sbjct: 78 FFYDG------DNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVALMESIAANEE 131 >gi|329847359|ref|ZP_08262387.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842422|gb|EGF91991.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 116 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 4/115 (3%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR LGMSQE L E + +TFQQVQKYE+G NR+ AS+L I+ L++P+++FF+ Sbjct: 1 MRRKFLGMSQEGLAEVIDLTFQQVQKYERGSNRISASKLYEIARALKAPVAYFFEGYGET 60 Query: 81 CS----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S E V F+ T +G++L F +I K+R+K++ELVR + SE Sbjct: 61 EAVEGFSESESEQFVHGFLMTTEGIELAEAFPRIRSAKLRRKVLELVRVLGESED 115 >gi|90309028|gb|ABD93637.1| hypothetical transcriptional regulator [Ehrlichia muris] Length = 216 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 17/145 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 72 KARPHPVDECVGKEIKRQRIMRGMSQNQLATKLGITFQQVQKYEKGTNRIVISRLYQLAT 131 Query: 65 VLESPISFFFDVSPTVCSDIS-------------SEENNVMDF----ISTPDGLQLNRYF 107 VL + +I+ +EE + +F I + + L + R + Sbjct: 132 VLNVEVRDIMLKLQEDLKNIACDHTVACTSILRDNEEKFIPEFHDNKIDSKEVLMMVRAY 191 Query: 108 IQIDDVKVRQKIIELVRSIVSSEKK 132 I + KVR I LV+++ K+ Sbjct: 192 TCIKNEKVRNIIYNLVKALSLDNKQ 216 >gi|83313460|ref|YP_423724.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948301|dbj|BAE53165.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 127 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 11/122 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +RLRR +LG+SQEKLGE +G+TFQQVQKYE+G NR+ SRL +S LE PIS+FFD P Sbjct: 1 MRLRRTLLGLSQEKLGELIGLTFQQVQKYERGANRISCSRLFDLSRSLEVPISYFFDDMP 60 Query: 79 TVCSDIS-----------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +S D + L+L R + I D VR++I +L +++ Sbjct: 61 EETKGLSPVQMVREPPKEEPPAAEADPRLRRETLELVRNYYSIVDPDVRRRIYDLAKALS 120 Query: 128 SS 129 Sbjct: 121 DR 122 >gi|146339475|ref|YP_001204523.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192281|emb|CAL76286.1| putative transcriptional regulatory protein [Bradyrhizobium sp. ORS278] Length = 131 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 55/120 (45%), Positives = 83/120 (69%), Gaps = 6/120 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI +GKRIRLRR+ +SQ +LGE LG++FQQVQKYEKGVNRVGA+RLQ I+ L+ P++ Sbjct: 18 DIELGKRIRLRRVEQKISQAELGEKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 77 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF+D D + E + F+ + L+L R + +I D V+++++ L+ SI ++E+ Sbjct: 78 FFYDG------DNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSLMESIAANEE 131 >gi|296114432|ref|ZP_06833086.1| HTH-type transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295979193|gb|EFG85917.1| HTH-type transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 207 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 50/95 (52%), Positives = 61/95 (64%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P+PVD+ VG RIRLRR +LGMSQE+LG LG+TFQQVQKYE+G NRVGASRL ++ V Sbjct: 7 STPSPVDVYVGSRIRLRRTLLGMSQERLGTALGLTFQQVQKYERGANRVGASRLYDLARV 66 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 L+ PI+FFFD P + F Sbjct: 67 LDVPIAFFFDGMPDEAAIAPVASMPAESFAEARGA 101 >gi|254796616|ref|YP_003081452.1| DNA-binding protein [Neorickettsia risticii str. Illinois] gi|254589843|gb|ACT69205.1| DNA-binding protein [Neorickettsia risticii str. Illinois] Length = 144 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + N K D+ +GK+IR R + G SQ + + +G+TFQQ+QKYE G NR+ SRL Sbjct: 4 ISENFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVSRLL 63 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFIS----TPDGLQLNRYFIQIDDVKV 115 I + + S+FF ++ D + N ++F + L L R F I V Sbjct: 64 DICKFCKVSPSYFFASLNKEQEGDTLHDSENSIEFEHENECNKELLVLVRAFKSITQDSV 123 Query: 116 RQKIIELVRSIVSS 129 R K++ LV+++ + Sbjct: 124 RSKVLSLVKTMSQA 137 >gi|56697146|ref|YP_167509.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678883|gb|AAV95549.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 134 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 4/124 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD VG+RIR RR LG+SQ +LG +G+ FQQVQKYE G NRV ASRL I+EVL+ I Sbjct: 4 VDTVVGRRIRARRSALGLSQAELGRAVGVRFQQVQKYESGANRVSASRLWAIAEVLDVHI 63 Query: 71 SFFFDVSPTVCSDISSEENNVMD---FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 S FF+ S + + +D F+ D +++ + + + R ++ VR++ Sbjct: 64 SHFFEGIQAPDSGVIDGSDAPVDRLMFLQDRDSVEMVEIYSSLPPAQKR-AVLAFVRTMA 122 Query: 128 SSEK 131 + Sbjct: 123 VDTQ 126 >gi|88607013|ref|YP_505749.1| DNA-binding protein [Anaplasma phagocytophilum HZ] gi|35057062|gb|AAN15209.1| putative transcriptional regulator [Anaplasma phagocytophilum] gi|88598076|gb|ABD43546.1| DNA-binding protein [Anaplasma phagocytophilum HZ] Length = 183 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 16/148 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 17 IEGKAKPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYE 76 Query: 62 ISEVLESPISFFFDV------SPTVCSDIS------SEENNVMDFIST----PDGLQLNR 105 ++ VL I+ S T +DIS +E ++ +F + L L R Sbjct: 77 LARVLGIEINDLMSKLQNDIRSITEGTDISITCLQEGDEASLEEFDHNYNDGKEVLMLVR 136 Query: 106 YFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + +I K+R I LV+ + + + Sbjct: 137 AYRRIKSEKMRGAIHTLVKVMCAEQSND 164 >gi|163852933|ref|YP_001640976.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163664538|gb|ABY31905.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 135 Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 3/124 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G+RI++ R G+SQ LG L +TFQQ+QKYE GVNRVGASRL ++ VLE P+S Sbjct: 15 DRLDGQRIKMLRKSKGISQSVLGRALSVTFQQIQKYENGVNRVGASRLSEVARVLEVPVS 74 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF+ + + + +F+ P + L FI I+D ++R++++ LVRS E+ Sbjct: 75 TFFEEGSGL---VEQGQKEAFEFLRVPGAVDLLNAFITIEDDRLRREVLALVRSATRREQ 131 Query: 132 KYRT 135 T Sbjct: 132 DQGT 135 >gi|302381344|ref|YP_003817167.1| hypothetical protein Bresu_0229 [Brevundimonas subvibrioides ATCC 15264] gi|302191972|gb|ADK99543.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 139 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 4/124 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD +VG+R+ +R+ LG +Q LG LG+TFQQ+QKYEKG NR+ AS+L I+ + Sbjct: 10 PHPVDRHVGRRVCEKRISLGYNQSDLGRALGLTFQQIQKYEKGANRISASKLWDIARFFK 69 Query: 68 SPISFFFDV---SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +++FF +D + DF ST +++ R Q+ + ++ ++++R Sbjct: 70 VDVAYFFQGLNNEQPGVADGAGPAAFEHDFPSTRHTIEIARLAPQLSS-RQQKLALDMIR 128 Query: 125 SIVS 128 + Sbjct: 129 EMAG 132 >gi|222087277|ref|YP_002545812.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724725|gb|ACM27881.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 180 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 77/135 (57%), Gaps = 5/135 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + +P+D +VG+++R+ R+ +SQ +LG + +++QQ+QKYE G NR+ AS L I+ Sbjct: 26 DTQAIHPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIA 85 Query: 64 EVLESPISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L PIS F+D P S++ E + + +++T +G + +++ ++R + Sbjct: 86 NCLNVPISRFYDGLPQAGSELVNGGLPEIDERIAYLATSEGRRFVEEILRLP-PRLRTRT 144 Query: 120 IELVRSIVSSEKKYR 134 L++ + +++ Sbjct: 145 FALIQVLTGDDEETA 159 >gi|88608440|ref|YP_506124.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama] gi|88600609|gb|ABD46077.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama] Length = 144 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + N K D+ +GK+IR R + G SQ + + +G+TFQQ+QKYE G NR+ SRL Sbjct: 4 ISENFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVSRLL 63 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFIS----TPDGLQLNRYFIQIDDVKV 115 I + + S+FF ++ D + N ++F + L L R F I V Sbjct: 64 DICKFCKVSPSYFFASLNKEQEGDTLHDSENSIEFEHENEYNKELLVLVRAFKSITQDSV 123 Query: 116 RQKIIELVRSIVSS 129 R K++ LV+++ + Sbjct: 124 RSKVLSLVKTMSQA 137 >gi|190894008|ref|YP_001984302.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190699669|gb|ACE93752.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 246 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 15/135 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 117 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 176 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P+S FF+ P T I +E + + +IST +G +L IDD +VR ++ Sbjct: 177 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRV 230 Query: 120 IELVRSIVSSEKKYR 134 + LV SIV E + + Sbjct: 231 VALVSSIVDEEMEEQ 245 >gi|23013262|ref|ZP_00053178.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 118 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 13/117 (11%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD---- 83 MSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ P+SFFFD Sbjct: 1 MSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVLDVPVSFFFDDMGEDAQSSSPA 60 Query: 84 ---------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 ++ + D ++ + L+L R + I D VR+K EL +++ S+K Sbjct: 61 AVIKGEAVTTAASPGDERDPMAKRETLELVRAYYSITDESVRRKAYELAKTLGGSDK 117 >gi|56417165|ref|YP_154239.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] gi|255004638|ref|ZP_05279439.1| hypothetical protein AmarV_05075 [Anaplasma marginale str. Virginia] gi|23168718|gb|AAN08687.1| transcriptional regulator [Anaplasma marginale str. South Idaho] gi|23168730|gb|AAN08693.1| transcriptional regulator [Anaplasma marginale] gi|23168742|gb|AAN08699.1| transcriptional regulator [Anaplasma marginale] gi|23168754|gb|AAN08705.1| transcriptional regulator [Anaplasma marginale] gi|23168766|gb|AAN08711.1| transcriptional regulator [Anaplasma marginale str. Washington Okanogan] gi|56388397|gb|AAV86984.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] Length = 187 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 16/149 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVEGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----DVSPTVCSDISS-------EENNVMDFIST----PDGLQLN 104 ++ VL I D+ P + ++ EE+++ +F + + L L Sbjct: 76 ELARVLGIEIKDLIAKLQNDLRPITDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 R + +I K+R I LV+ + + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCAEQQQD 164 >gi|114571049|ref|YP_757729.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114341511|gb|ABI66791.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 128 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 82/124 (66%), Gaps = 2/124 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +D++VGKR+R RR +LG++Q++L E +GI FQQ+QKYE G NRV ASRL ++E L Sbjct: 1 MTSDIDLHVGKRLRRRRRLLGLTQQQLAESVGIRFQQIQKYECGANRVSASRLFELAESL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+ +F++ +++ ++ D +S + + L R + ++ + + R++++EL +S+ Sbjct: 61 DVPVQYFYEGLSKR-DEVNGDDTLAADVLSQKETVDLIRAYYRLGE-RPRKRLLELAKSL 118 Query: 127 VSSE 130 E Sbjct: 119 EPEE 122 >gi|222081446|ref|YP_002540809.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726125|gb|ACM29214.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 222 Score = 129 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 75/130 (57%), Gaps = 5/130 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +VG+++R+ R+ +SQ +LG + +++QQ+QKYE G NR+ AS L I+ L Sbjct: 73 HPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNV 132 Query: 69 PISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 PIS F+D P S++ E + + +++T +G + +++ ++R + L++ Sbjct: 133 PISRFYDGLPQAGSELVNGGLPEIDERIAYLATSEGRRFVEEILRLP-PRLRTRTFALIQ 191 Query: 125 SIVSSEKKYR 134 + +++ Sbjct: 192 VLTGDDEETA 201 >gi|254995332|ref|ZP_05277522.1| hypothetical protein AmarM_05275 [Anaplasma marginale str. Mississippi] Length = 187 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 16/149 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVEGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----DVSPTVCSDISS-------EENNVMDFIST----PDGLQLN 104 ++ VL I D+ P + ++ EE+++ +F + + L L Sbjct: 76 ELARVLGIEIKDLIAKLQNDLRPITDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 R + +I K+R I LV+ + + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCAEQQQD 164 >gi|222082024|ref|YP_002541389.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726703|gb|ACM29792.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 160 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 75/130 (57%), Gaps = 5/130 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +VG+++R+ R+ +SQ +LG + +++QQ+QKYE G NR+ AS L I+ L Sbjct: 31 HPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNV 90 Query: 69 PISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 PIS F++ P S++ E + + +++T +G + +++ ++R + L++ Sbjct: 91 PISRFYEGLPQAGSELVNGGLPEIDERIAYLATSEGRRFVEEILRLP-PRLRTRTFALIQ 149 Query: 125 SIVSSEKKYR 134 + +++ Sbjct: 150 VLTGDDEETA 159 >gi|114327057|ref|YP_744214.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315231|gb|ABI61291.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 152 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 13/140 (9%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 PN +D++VG+RIRLRR LG+S++KLG+ +GI+ Q+QKYE G R GA RL + Sbjct: 13 EKDDQPNTLDLHVGRRIRLRRAFLGVSEQKLGDLIGISASQIQKYETGTLRAGAVRLFDL 72 Query: 63 SEVLESPISFFFDVSPTVC------------SDISSEENNVMDF-ISTPDGLQLNRYFIQ 109 + ++ ISFFFD P + + D + L+L + F + Sbjct: 73 ARAMDVSISFFFDEMPEQEVANHGVAAISRLGGFAEPQEGFGDGDTMRQEALELIQAFFR 132 Query: 110 IDDVKVRQKIIELVRSIVSS 129 I D VR++I+EL+RS+ Sbjct: 133 ITDPAVRERILELIRSLAKE 152 >gi|73667507|ref|YP_303523.1| transcriptional regulator [Ehrlichia canis str. Jake] gi|72394648|gb|AAZ68925.1| transcriptional regulator [Ehrlichia canis str. Jake] Length = 215 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 74/148 (50%), Gaps = 17/148 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 68 SATKVRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQ 127 Query: 62 ISEVLESPISFFFDVSPTVCSDIS-------------SEENNVMDF----ISTPDGLQLN 104 ++ VL + +IS +EE + +F I + + L + Sbjct: 128 LASVLNVEVRDIMLKLQEDLKNISCDNPITPPHALRDNEEKFLPEFNDSKIDSKEVLMMV 187 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 R + I + KVR I LV+++ K Sbjct: 188 RAYTCIKNEKVRNIIYNLVKALSLDNKS 215 >gi|114798925|ref|YP_758959.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739099|gb|ABI77224.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 132 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 76/126 (60%), Gaps = 4/126 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + D++VGKR+R RR +LGM+Q+ L +G+ FQQ+QKYE G NR+ ASRL ++ + Sbjct: 1 MADETDLHVGKRLRRRRRLLGMTQQDLASQVGVRFQQIQKYECGANRITASRLYDLARAM 60 Query: 67 ESPISFFFDV---SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + +F+D TV + + E D +S + L+L R + ++ + + R++++EL Sbjct: 61 NVSVQYFYDGMVVPGTVPNAANDAEQMEGDILSQKETLELVRAYYRLSE-RPRRRLLELA 119 Query: 124 RSIVSS 129 +++ Sbjct: 120 KALEQD 125 >gi|13512585|gb|AAK28679.1| hypothetical transcriptional regulator [Ehrlichia canis] Length = 204 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 74/148 (50%), Gaps = 17/148 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 57 SATKVRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQ 116 Query: 62 ISEVLESPISFFFDVSPTVCSDIS-------------SEENNVMDF----ISTPDGLQLN 104 ++ VL + +IS +EE + +F I + + L + Sbjct: 117 LASVLNVEVRDIMLKLQEDLKNISCDNPITPPHALRDNEEKFLPEFNDSKIDSKEVLMMV 176 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 R + I + KVR I LV+++ K Sbjct: 177 RAYTCIKNEKVRNIIYNLVKALSLDNKS 204 >gi|304320427|ref|YP_003854070.1| hypothetical protein PB2503_04267 [Parvularcula bermudensis HTCC2503] gi|303299329|gb|ADM08928.1| hypothetical protein PB2503_04267 [Parvularcula bermudensis HTCC2503] Length = 122 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 51/117 (43%), Positives = 81/117 (69%), Gaps = 9/117 (7%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 M+ G+SQEKLGE LG+TFQQVQKYEKGVNR+GA RL I+++L+ P+ FF+D + D Sbjct: 1 MMQGISQEKLGEDLGLTFQQVQKYEKGVNRIGAGRLFEIAQILDVPVQFFYDDFQSDEDD 60 Query: 84 IS---------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + +E ++ ++T DG+QL + F++I+DV +R++I++LV++I + Sbjct: 61 STLSEETTGYEAERTDLFASLATSDGMQLAQAFLRINDVTIRRRIVDLVKAIAEPDS 117 >gi|114799059|ref|YP_759118.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739233|gb|ABI77358.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 143 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 11/130 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD VG+R+R RR++LG++Q+++ + LGI++QQ+QKYE G NR+ A RL I+EVLE Sbjct: 10 NQVDRQVGERMRRRRILLGLTQDQVADALGISYQQIQKYETGANRISAGRLAQIAEVLEV 69 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +FF V + S S+ ++L R F +I+D +VR ++ L+RS+ Sbjct: 70 LPGWFFGVPEAADAPGS----------SSRAVIELVRNFSRIEDERVRTHLMALMRSLSG 119 Query: 129 S-EKKYRTIE 137 S E + +E Sbjct: 120 SGEGESAELE 129 >gi|86651824|gb|ABD14429.1| transcriptional regulator [Anaplasma centrale] Length = 187 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 16/149 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +VG K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVGGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----------DVSPTVCSDISSEENNVMDFIST-----PDGLQLN 104 ++ VL I D + + ++ + ++ S + L L Sbjct: 76 ELARVLGIEIKDLISKLQNDLRSITDTGDAPDAALREDDESSLEEFSHGYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 R + +I K+R I LV+ + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCMEQQRD 164 >gi|163740854|ref|ZP_02148247.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385845|gb|EDQ10221.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 102 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L P+SFFF+ + S + Sbjct: 1 MTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDALSVPVSFFFEGLQDDDAPASDK 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 D + + L L R + I + + R+++ EL R + + Sbjct: 61 AQVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVLSDA 101 >gi|269958434|ref|YP_003328221.1| putative transcriptional regulator [Anaplasma centrale str. Israel] gi|269848263|gb|ACZ48907.1| putative transcriptional regulator [Anaplasma centrale str. Israel] Length = 187 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 16/149 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +VG K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVGGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----------DVSPTVCSDISSEENNVMDFIST-----PDGLQLN 104 ++ VL I D + + ++ + ++ S + L L Sbjct: 76 ELARVLGIEIKDLISKLQNDLRSITDTGDAPDAALREDDESSLEEFSHGYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 R + +I K+R I LV+ + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCMEQQRD 164 >gi|83312661|ref|YP_422925.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82947502|dbj|BAE52366.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 121 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 9/111 (8%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS 85 +G+SQE LGE LG+TFQQ+QKYE+G NR+GASRL +S LE P+ +F+D S Sbjct: 1 MGLSQEALGEALGLTFQQIQKYERGANRIGASRLFDLSRALEVPVEYFYDEMSPDVMAAS 60 Query: 86 SEE---------NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +D +S + L L R + +I D VR+++ EL R++ Sbjct: 61 PRHMVRATQEPVPQQIDPMSKRETLDLVRTYYKIGDPNVRKRVYELARALA 111 >gi|84686223|ref|ZP_01014118.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665750|gb|EAQ12225.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 104 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 ++GM+Q++L E +GI FQQ+QKYE G+NRV ASRL IS+ L P+SFFF+ ++ Sbjct: 1 MVGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDISDALSVPVSFFFEGL-EGGAER 59 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +E D ++ + L+L R + I + + R+++ EL R + + Sbjct: 60 EAEHALPDDILADKEALELVRSYYAIPENQ-RRRLFELARVLSDA 103 >gi|222082679|ref|YP_002542044.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727358|gb|ACM30447.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 140 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 7/122 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD VG++IRL R MSQE L +CLG+TFQQVQKYE G NRV AS+L I+ L+ Sbjct: 21 HPVDTYVGQQIRLARKQQRMSQEALAKCLGVTFQQVQKYEIGANRVSASKLFEIATALQR 80 Query: 69 PISFFFDV----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S+FF+ + +D+ E V+ + T +G +L + F+ VR+ ++ L+ Sbjct: 81 PVSYFFEGFANAAERDPTDVERESVTVIQY--TAEGRRLAKAFVAAM-PDVRKAVVGLLE 137 Query: 125 SI 126 S+ Sbjct: 138 SM 139 >gi|329851244|ref|ZP_08266001.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328840090|gb|EGF89662.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 152 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 73/121 (60%), Gaps = 2/121 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D++VG+R+RL+R LG++Q L L ++FQQ+QKYE+G NR+ AS+L I+ L+ Sbjct: 21 HPIDLHVGERVRLKRKELGITQPALATQLKVSFQQLQKYERGFNRISASKLYEIAGALDV 80 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 PI +FFD + + S + V + + T + +L F ++ + R+ + VR + + Sbjct: 81 PIGYFFDGAKGTAAAASPKVPVVPETL-TAEEARLLEDFRRLK-PEGRKFVTNAVRRLAA 138 Query: 129 S 129 Sbjct: 139 Q 139 >gi|163745937|ref|ZP_02153296.1| transcriptional regulator, Cro/CI family, putative [Oceanibulbus indolifex HEL-45] gi|161380682|gb|EDQ05092.1| transcriptional regulator, Cro/CI family, putative [Oceanibulbus indolifex HEL-45] Length = 103 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 37/102 (36%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q+KL E +GI FQQ+QKYE G NRV ASRL I++ L P+SFFF+ ++ ++ Sbjct: 1 MTQQKLAELVGIKFQQIQKYETGANRVSASRLWDIADALGVPVSFFFEGIKDDQAEGTAP 60 Query: 88 -ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + D ++ + ++L R + I + + R+++ EL R + Sbjct: 61 LDGLPADLMADKEAMELVRSYYAIPENQ-RRRLFELARVLSD 101 >gi|254420054|ref|ZP_05033778.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186231|gb|EDX81207.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 142 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 76/132 (57%), Gaps = 4/132 (3%) Query: 1 MVGNK-KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K + P+PVD +VG+R++ +R+ LG++Q L +G++FQQVQKYEKG NRV AS+L Sbjct: 6 MAREKLEEPHPVDRHVGRRVQEKRLDLGLTQTALARAVGVSFQQVQKYEKGANRVSASKL 65 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQIDDVKVRQ 117 ++E ++ I FFF + EE D T +++ R ++ + ++ Sbjct: 66 FEMAEFMKVDIPFFFQGFHDAQPGVGEEEAPGFDHEHKPTKHSVEIARLAPRLP-ARNQK 124 Query: 118 KIIELVRSIVSS 129 I++++R ++ Sbjct: 125 LILDMMREMLGE 136 >gi|222475530|ref|YP_002563947.1| transcriptional regulator [Anaplasma marginale str. Florida] gi|222419668|gb|ACM49691.1| transcriptional regulator [Anaplasma marginale str. Florida] Length = 187 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 16/149 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V K P+PVD VG+ I+ +R++ GMS+ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVEGKARPHPVDEYVGREIKKQRIMKGMSRNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----DVSPTVCSDISS-------EENNVMDFIST----PDGLQLN 104 ++ VL I D+ P + ++ EE+++ +F + + L L Sbjct: 76 ELARVLGIEIKDLIAKLQNDLRPITDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 R + +I K+R I LV+ + + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCAEQQQD 164 >gi|170748847|ref|YP_001755107.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655369|gb|ACB24424.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 143 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 4/133 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K D +G RI R+ G+SQ LG+ +G++FQQVQKYEKG NR+GA RLQ I+++ Sbjct: 8 KSATETDRTIGGRIAALRVAQGLSQTDLGQAIGVSFQQVQKYEKGRNRIGAGRLQAIADL 67 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L+ P+ FF D P ++L F I D R I+ +V++ Sbjct: 68 LKVPVDTFF----ADPRDTGGGRVGPAALFEDPKVMELVLAFTSITDETTRGGILSIVKA 123 Query: 126 IVSSEKKYRTIEE 138 + ++ + Sbjct: 124 AAALQESRAGAQR 136 >gi|46201107|ref|ZP_00055727.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 127 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +RLRR +LG+SQEKLGE +G+TFQQVQKYE+G NR+ SRL +S LE IS+FF+ Sbjct: 1 MRLRRTLLGLSQEKLGEMIGLTFQQVQKYERGANRISCSRLFDLSRSLEVTISYFFEDMA 60 Query: 79 TVCSDIS-----------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +S D + L+L R + I D VR++I +L +++ Sbjct: 61 EETKGLSPVQMVREPPKEEPAAAEADPRLRRETLELVRNYYSITDPDVRRRIYDLAKALS 120 Query: 128 SS 129 Sbjct: 121 DR 122 >gi|296532393|ref|ZP_06895122.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296267280|gb|EFH13176.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 144 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 76/128 (59%), Gaps = 7/128 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + D +VG RIR RR++LG+SQ++L +G+T+QQ KYE+G+NR+ A RL I+ Sbjct: 19 STQRARQADRHVGMRIRERRLMLGLSQQQLASMIGVTYQQAHKYERGLNRISAGRLFEIA 78 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 VL P+S+FF+ D S++ V + L+L R F ID+ + ++ + ++ Sbjct: 79 TVLAVPVSWFFEGLDE---DGSTQPLGVRQRMC----LELARNFALIDNERHQEALSQMA 131 Query: 124 RSIVSSEK 131 R++ + + Sbjct: 132 RALAAQSQ 139 >gi|329891162|ref|ZP_08269505.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846463|gb|EGF96027.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 122 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 4/124 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + +D VG RI RR LG SQ LG LG++FQQ+QKYE G NRV ASRL + Sbjct: 3 RRSHHIDQAVGLRIAARRSALGWSQSVLGRELGVSFQQIQKYETGANRVSASRLHQAATA 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ++ FF P+ ++ V +++ +G L F +I D R+ + + ++ Sbjct: 63 MGCSVADFFPARPSAEGEVEL----VHPVLASAEGRGLAEAFARIPDAGARRALTRVAQA 118 Query: 126 IVSS 129 + + Sbjct: 119 MAGA 122 >gi|197105530|ref|YP_002130907.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196478950|gb|ACG78478.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 128 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + I +PVD+ VG RIRL R + G+SQ+ L E G+TFQQ+QKYE+G NRV AS L Sbjct: 3 SKPEAIADPVDVAVGARIRLLRKLKGLSQQALAEAAGVTFQQIQKYERGANRVSASMLAR 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L P++ F S SS + V ++ P L+L + + + R ++E Sbjct: 63 IARTLGVPVAEMF----GEASPTSSAVDEVAALLAEPGALELLKAYADLPRGASRSALVE 118 Query: 122 LVRSI 126 VRS+ Sbjct: 119 FVRSL 123 >gi|163868821|ref|YP_001610047.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018494|emb|CAK02052.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 50/120 (41%), Positives = 77/120 (64%), Gaps = 5/120 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ DI++GK+IR +R I+G+SQ++LG LG+TFQQ+QKYEKG+NRV A LQ I+ Sbjct: 5 QTKNPHFYDISLGKKIRFKRKIMGISQKQLGNHLGVTFQQIQKYEKGLNRVSARCLQEIA 64 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + L+ PISFF+ S + + D IS+ + L + F +I K ++ I++L+ Sbjct: 65 DRLDVPISFFYADSAQKENSLC----YYDDQISSKEEYLLLKNF-RILTRKKQKAILQLI 119 >gi|240851141|ref|YP_002972543.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268264|gb|ACS51852.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 151 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 6/118 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR +R ++GMSQ+KLG LG+TFQQ+QKYEKG NR+GA RLQ I+++ Sbjct: 38 KNPHFNDISIGRKIRFKRTMIGMSQKKLGSQLGVTFQQIQKYEKGSNRIGAGRLQEIADI 97 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE PISFF+ T + + +E IS+ + L + F ++ K ++ I+ L+ Sbjct: 98 LEVPISFFYTDLSTKENASTCDER-----ISSKEEQVLLKSFRELK-PKKQKAILCLI 149 >gi|254477432|ref|ZP_05090818.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214031675|gb|EEB72510.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 101 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 2/101 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L P+SFFF+ + + Sbjct: 1 MTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDALGVPVSFFFEGLQEDDG-AAEK 59 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 D + + L L R + I + + R+++ EL R + Sbjct: 60 SQVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVLSD 99 >gi|307942085|ref|ZP_07657436.1| Cro/CI family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307774371|gb|EFO33581.1| Cro/CI family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 126 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 2/126 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + PNPVD VG R+R RR L MSQE L + LG +FQQ+QKYE G NR+ A RL I+ Sbjct: 2 TTRKPNPVDTYVGIRVRQRRQALNMSQETLADKLGTSFQQLQKYENGTNRISAGRLHAIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L + F++ P ++ ++ + V ++ P L F + ++ ++ + Sbjct: 62 SALGATPGHFYEGLPDAPEEVETDLD-VQKLLTIPGATDLLMTFSRCT-GNAQRSLVNVA 119 Query: 124 RSIVSS 129 + ++ Sbjct: 120 EAAATT 125 >gi|240851106|ref|YP_002972508.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268229|gb|ACS51817.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 157 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 4/122 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ +DI +GKRIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I+ Sbjct: 36 PTKNPHFIDILIGKRIRHRRISMGLSQKALGSHLGVSFQQIQKYEKGLNRVSAKCLLEIA 95 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNV-MDFISTPD-GLQLNRYFIQIDDVKVRQKIIE 121 + LE PISFF+ + D+S++E + D + + L + F ++ K ++ I+ Sbjct: 96 QKLEVPISFFY-ADIAIKEDLSTKETLLHHDQCTYSEKEHTLLKNFRELKS-KKQKAILW 153 Query: 122 LV 123 L+ Sbjct: 154 LI 155 >gi|221638300|ref|YP_002524562.1| XRE family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221159081|gb|ACM00061.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides KD131] Length = 102 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 4/105 (3%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 ++GM+Q++L +C+GI FQQ+QKYE G+NRV ASRL I+E L ISFFF+ Sbjct: 1 MVGMTQQQLADCVGIKFQQIQKYETGMNRVSASRLWDIAEALGVSISFFFEGLEGAGDQA 60 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 E D I+ + L+L R + I + + R+++ +L R + + Sbjct: 61 RQAEG---DRITDKEALELVRSYYAIPEAQ-RRRLFDLARVLSEA 101 >gi|163868976|ref|YP_001610205.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018652|emb|CAK02210.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 135 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 80/128 (62%), Gaps = 11/128 (8%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ +D+++GKRIR RRM + +SQ+ LG LG++FQQ+QKYEKG+NRV A L I+ Sbjct: 9 QTKNPHFIDVSIGKRIRHRRMTMWLSQKTLGNFLGVSFQQIQKYEKGLNRVSAKCLLEIA 68 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMD--------FISTPDGLQLNRYFIQIDDVKV 115 + L+ PISFF++ + +D++++E+ V + + + L + F ++ K Sbjct: 69 QKLQVPISFFYEDL--LATDLATKEDLVSEGNPSHHDQYTYSEKEHALLKNFREL-QPKK 125 Query: 116 RQKIIELV 123 ++ I+ L+ Sbjct: 126 QKAILWLL 133 >gi|16126490|ref|NP_421054.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235270|ref|YP_002517707.1| transcriptional regulator of stalk biogenesis staR [Caulobacter crescentus NA1000] gi|13423760|gb|AAK24222.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|78057842|gb|ABB17333.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|220964443|gb|ACL95799.1| transcriptional regulator of stalk biogenesis staR [Caulobacter crescentus NA1000] Length = 131 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 77/121 (63%), Gaps = 1/121 (0%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N +D+++GKR+R RR +LG++Q++L +G+ FQQ+QKYE G NR+ A+RL +SE Sbjct: 3 SMGNDIDVHLGKRLRRRRRLLGLTQQQLAGTVGVRFQQIQKYECGANRISAARLWQLSEA 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+ +F+D + +SE + + + L L R + + + + R+++++L +S Sbjct: 63 LEVPVGYFYDGLSDTRRETTSESAEGGEMFARKETLDLIRAYYLLGE-RPRRRLLDLAKS 121 Query: 126 I 126 + Sbjct: 122 L 122 >gi|190894160|ref|YP_001984454.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190699821|gb|ACE93904.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 170 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 15/133 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 37 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 96 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P+S FF+ P T I +E + + +IST +G +L IDD +VR ++ Sbjct: 97 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRV 150 Query: 120 IELVRSIVSSEKK 132 + LV SIV E + Sbjct: 151 VALVSSIVDEEME 163 >gi|218675040|ref|ZP_03524709.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 180 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 15/133 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 47 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 106 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P+S FF+ P T +E + + +IST +G +L IDD +VR ++ Sbjct: 107 PVSRFFEGLPDPETTQGQQFITEIDGKIAYISTAEGRRL------IDDVLLLSPRVRSRV 160 Query: 120 IELVRSIVSSEKK 132 + LV SIV E + Sbjct: 161 VALVSSIVDEEME 173 >gi|218681208|ref|ZP_03529105.1| putative transcriptional regulator protein [Rhizobium etli CIAT 894] Length = 170 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 15/133 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 37 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 96 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P+S FF+ P T I +E + + +IST +G +L IDD +VR ++ Sbjct: 97 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRV 150 Query: 120 IELVRSIVSSEKK 132 + LV SIV E + Sbjct: 151 VALVSSIVDEEME 163 >gi|240851449|ref|YP_002972836.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268572|gb|ACS52159.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 118 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 49/120 (40%), Positives = 75/120 (62%), Gaps = 5/120 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ DI+VGK+IR RR +G+SQEKLG+ +G++FQQ+QKYE G NRVGA RLQ I+ Sbjct: 2 QNKTPHLNDISVGKKIRCRRKYMGISQEKLGKKIGVSFQQIQKYENGSNRVGAGRLQEIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ ISFF+ T S+ + + + + + L + F ++ K ++ I+ LV Sbjct: 62 NILDVDISFFY----TDISEKRNISYPYNEGLHSKEEYSLLKGFRKLK-HKKQKAILWLV 116 >gi|218674449|ref|ZP_03524118.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 174 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 15/135 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 37 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 96 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P+S FF+ P T I +E + + +IST +G +L IDD +VR ++ Sbjct: 97 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRV 150 Query: 120 IELVRSIVSSEKKYR 134 + LV SIV E + + Sbjct: 151 VALVSSIVEEEMEEQ 165 >gi|254295424|ref|YP_003061447.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043955|gb|ACT60750.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 141 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 10/141 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K+PN +D +VG+R+R RR L SQEKLGE LG+TFQQ+QKYEKGVNR+ A RL Sbjct: 1 MSEN-KLPNSIDKHVGRRVRWRRRELNFSQEKLGELLGLTFQQIQKYEKGVNRISAGRLF 59 Query: 61 HISEVLESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +S VLE+ I +FF + S+++ + + D + L F I D K+ Sbjct: 60 EMSRVLETTIGYFFMGVEEMDEAMNRSFAESDKDQALTGLIDADAVDLVVAFQSIPDPKL 119 Query: 116 RQKIIELVR----SIVSSEKK 132 RQ I+ +VR + +E Sbjct: 120 RQSILTMVRNSAEAFADNESN 140 >gi|163868974|ref|YP_001610203.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018650|emb|CAK02208.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 130 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 6/117 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +DI++GKRIR RR+ +G+SQ++LG LG++FQQVQKYEKG NRV A RLQ I+ Sbjct: 11 KNPNFIDISIGKRIRHRRISMGLSQKELGSHLGVSFQQVQKYEKGFNRVSAGRLQEIANR 70 Query: 66 LESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKI 119 LE PI FF+ DI ++EN + S + L R F ++ K ++ I Sbjct: 71 LEVPIHFFY-ADIATKEDIPTKENLSHHDQETYSEKE-HALVRNFRELH-PKKQKAI 124 >gi|163868999|ref|YP_001610229.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018676|emb|CAK02234.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 77/123 (62%), Gaps = 7/123 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I+ Sbjct: 9 QTKNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIA 68 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKII 120 + L+ PISFF+ + + +DI+++EN D S + L + F ++ K ++ I+ Sbjct: 69 QKLQVPISFFY--ADLLTTDIATKENLSHCNQDIYSEKE-HALLKNFREL-QPKKQKAIL 124 Query: 121 ELV 123 L+ Sbjct: 125 WLL 127 >gi|21492787|ref|NP_659862.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|21467212|gb|AAM54875.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 161 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 15/133 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 28 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 87 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P+S FF+ P T I +E + + +IST +G +L IDD +VR ++ Sbjct: 88 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRV 141 Query: 120 IELVRSIVSSEKK 132 + LV SIV E + Sbjct: 142 VALVSSIVDEEME 154 >gi|218507310|ref|ZP_03505188.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 166 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 37 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 96 Query: 69 PISFFFDVSPT----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P+S FF+ P +E + + +IST +G +L IDD +VR ++ Sbjct: 97 PVSRFFEGLPDPETLQGQQFITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRV 150 Query: 120 IELVRSIVSSEKK 132 + LV SIV E + Sbjct: 151 VALVSSIVDEEME 163 >gi|163868981|ref|YP_001610211.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018658|emb|CAK02216.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 76/122 (62%), Gaps = 5/122 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I+ Sbjct: 9 QTKNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIA 68 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + L+ PISFF+ + + +DI+++EN + + L + F ++ K ++ I+ Sbjct: 69 QKLQVPISFFY--ADLLTADIATKENPSHHDQYTYSEKEHALLKNFREL-QPKKQKAILW 125 Query: 122 LV 123 L+ Sbjct: 126 LL 127 >gi|49476099|ref|YP_034140.1| DNA-binding protein [Bartonella henselae str. Houston-1] gi|49238907|emb|CAF28202.1| DNA-binding protein [Bartonella henselae str. Houston-1] Length = 152 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 53/120 (44%), Positives = 76/120 (63%), Gaps = 5/120 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ DI+VGKRIR RR +LG+SQ++LG LG+TFQQ+QKYEKG+NRVGA RLQ I+ Sbjct: 36 QNKNPHFNDISVGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEKGINRVGAGRLQEIA 95 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ ISFF+ + +S N IS + L + F ++ K ++ I+ L+ Sbjct: 96 TLLDVSISFFY-ADISTKEHVSYPRNKG---ISNKEEDFLLKSFRELK-PKKQKAILCLL 150 >gi|163868997|ref|YP_001610227.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018674|emb|CAK02232.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 7/123 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQVQKYEKG+NRV A L I+ Sbjct: 9 QTKNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQVQKYEKGLNRVSAGCLLEIA 68 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKII 120 + L+ PISFF+ + + +DI+++EN D S + L + F ++ K ++ I+ Sbjct: 69 QKLQVPISFFY--ADLLTTDIATKENLSHCNQDTYSEKE-HALLKNFREL-QPKKQKAIL 124 Query: 121 ELV 123 L+ Sbjct: 125 CLL 127 >gi|295690271|ref|YP_003593964.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432174|gb|ADG11346.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 127 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 78/124 (62%), Gaps = 1/124 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D+++GKR+R RR +LG++Q++L E +G+ FQQ+QKYE G NR+ A+RL ++E L Sbjct: 1 MGNDIDVHLGKRLRRRRRLLGLTQQQLAEVVGVRFQQIQKYECGANRISAARLWQLAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+ +F+D V + + E + + + L R + + + + R+++++L +S+ Sbjct: 61 EVPVGYFYDGLSEVRREAAGEIAESGEMFARKETQDLVRAYYLLGE-RPRRRLLDLAKSL 119 Query: 127 VSSE 130 E Sbjct: 120 HGGE 123 >gi|240851130|ref|YP_002972532.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268253|gb|ACS51841.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 117 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 6/120 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K PN +DI +GKRIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG NRV A L I+ Sbjct: 2 QTKNPNFIDILIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSAGCLLEIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + L+ PISFF+ T + S + S + L + F ++ K ++ I+ L+ Sbjct: 62 QKLDVPISFFY-ADITTKENASHYDQETY---SEKE-HALLKNFRELK-AKKQKAILWLI 115 >gi|254485635|ref|ZP_05098840.1| transcriptional regulator, Cro/CI family, putative [Roseobacter sp. GAI101] gi|214042504|gb|EEB83142.1| transcriptional regulator, Cro/CI family, putative [Roseobacter sp. GAI101] Length = 103 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q+KL E +GI FQQ+QKYE G NRV ASRL I++ L +++FF+ + + Sbjct: 1 MTQQKLAELVGIKFQQIQKYETGANRVSASRLWDIADALNVSVAYFFEGMDSEQTKNQDV 60 Query: 88 ENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +N+ D I + + L R + I + + R+++ EL R + Sbjct: 61 PDNIPADLIGDKEAMDLVRSYYAIPENQ-RRRLFELARVLSD 101 >gi|240851140|ref|YP_002972542.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268263|gb|ACS51851.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 151 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 77/117 (65%), Gaps = 6/117 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR +R ++GMSQ++LG LG+TFQQ+QKYEKG NR+GA RLQ I+++ Sbjct: 38 KNPHFNDISIGRKIRFKRTMIGMSQKQLGSQLGVTFQQIQKYEKGSNRIGAGRLQEIADI 97 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 LE P SFF+ T + + +E IS+ + L + F ++ K ++ I+ L Sbjct: 98 LEVPSSFFYTDLSTKENASTCDER-----ISSKEEQILLKSFRELK-PKKQKAILRL 148 >gi|144900186|emb|CAM77050.1| transcriptional regulators [Magnetospirillum gryphiswaldense MSR-1] Length = 153 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNP+D+++GKRIR RR +G+S E L + + + + + E G RVG L +S VL Sbjct: 24 RPNPLDLHLGKRIRARRNAIGLSLEDLAQAMAVATETLLAMENGSQRVGPQLLHRLSIVL 83 Query: 67 ESPISFFFDVSP-TVCSDISSEENNVMDFIST--PDGLQLNRYFIQIDDVKVRQKIIELV 123 + P +FFD P + +D + D + + L+L R ++ I D K RQ + +L Sbjct: 84 DVPFGYFFDGMPRELDADFPGTPFDDCDPVGDDMREALELVRAYLAISDEKKRQMVHQLA 143 Query: 124 RSIVS 128 R + Sbjct: 144 RKLSE 148 >gi|163869009|ref|YP_001610239.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018686|emb|CAK02244.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 146 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 83/123 (67%), Gaps = 11/123 (8%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ DI++G++IR RR +L +SQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I+ Sbjct: 9 PTKNPHSNDISIGRKIRFRRKMLKISQKELGDRLGVTFQQIQKYEKGLNRVGAGRLQEIA 68 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++L+ I FF+ +DIS++E+ ++ + S+ + L + F ++ K ++ I+ Sbjct: 69 DILDISIFFFY-------ADISTKEHVLLPYEEMTSSQEEHTLLKSFRELK-PKQQKAIL 120 Query: 121 ELV 123 L+ Sbjct: 121 CLI 123 >gi|254559380|ref|YP_003066475.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266658|emb|CAX22435.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 111 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G+SQ LG +G++FQQ+QKYE G N VGA RL I+ VL P+S FF+ Sbjct: 2 RKSRGLSQIALGIAIGVSFQQIQKYEIGANCVGAGRLSDIARVLGGPVSVFFEEGDAA-- 59 Query: 83 DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E+ V D + P + L FI I+D ++R++++ LVR+ E+ + Sbjct: 60 -AAQEKTEVFDLLRAPGAVDLLNAFITIEDDRLRREVLALVRNAARMEQDHGA 111 >gi|49476100|ref|YP_034141.1| DNA binding protein [Bartonella henselae str. Houston-1] gi|49238908|emb|CAF28203.1| DNA binding protein [Bartonella henselae str. Houston-1] Length = 152 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 52/120 (43%), Positives = 76/120 (63%), Gaps = 5/120 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ DI+VGKRIR RR +LG+SQ++LG LG+TFQQ+QKYEKG+NRVGA RLQ I+ Sbjct: 36 QNKNPHFNDISVGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEKGINRVGAGRLQEIA 95 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ ISFF+ + +S + IS + L + F ++ K ++ I+ L+ Sbjct: 96 TLLDVSISFFY-ADISKKEHVSYPRDKG---ISNKEEDFLLKSFRELK-PKKQKAILCLL 150 >gi|49475984|ref|YP_034025.1| DNA-binding protein [Bartonella henselae str. Houston-1] gi|49238792|emb|CAF28061.1| DNA-binding protein [Bartonella henselae str. Houston-1] Length = 118 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 55/122 (45%), Positives = 80/122 (65%), Gaps = 11/122 (9%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ DI+VGK+IR RR I+G+SQ++LG LGITFQQ+QKYEKG+NRV A RLQ I++ Sbjct: 3 TKNPHFNDISVGKKIRFRRSIMGLSQKQLGSHLGITFQQIQKYEKGINRVSAGRLQEIAD 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L+ P+SFF+ +DIS +E+ + D IS L + F + + K ++ I+ Sbjct: 63 RLDVPVSFFY-------ADISKKEDTLYPDNDRISNKAEHLLLKNFRGL-NPKKQRAILR 114 Query: 122 LV 123 L+ Sbjct: 115 LI 116 >gi|240851142|ref|YP_002972544.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268265|gb|ACS51853.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 130 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 48/118 (40%), Positives = 78/118 (66%), Gaps = 5/118 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR +R ++GMSQ++LG LG+TFQQ+QKYEKG NR+GA RLQ I+++ Sbjct: 16 KNPHFNDISIGRKIRFKRTMIGMSQKQLGSQLGVTFQQIQKYEKGSNRIGAGRLQEIADI 75 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE P SFF+ T + + + + IS+ + L + F ++ K ++ I+ L+ Sbjct: 76 LEVPSSFFYADLSTKENAL----DPCDERISSKEEHILLKSFRELK-PKKQKAILCLI 128 >gi|288957911|ref|YP_003448252.1| transcriptional regulator [Azospirillum sp. B510] gi|288910219|dbj|BAI71708.1| transcriptional regulator [Azospirillum sp. B510] Length = 353 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 6/124 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD +VG+R+R+RR +LGMSQEKLGE +G+TFQQVQKYE+G NR+ A L + +VL+ P Sbjct: 124 SVDAHVGQRVRMRRTLLGMSQEKLGEAIGLTFQQVQKYERGSNRISAGTLYRLGQVLDVP 183 Query: 70 ISFFFDV----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +SFFFD P E ++ IS + +L R + + V +++ L+ + Sbjct: 184 VSFFFDTYNDAGPRRSRGGFEEPDDNNSQISRREA-RLLRLW-RAAPSHVSDEMLSLLSA 241 Query: 126 IVSS 129 + Sbjct: 242 LSPE 245 >gi|88657049|gb|ABD47298.1| RegA [Rhizobium leguminosarum bv. trifolii TA1] Length = 99 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 49/94 (52%), Positives = 64/94 (68%), Gaps = 2/94 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITF+Q+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQNGLAELLGITFRQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 L P+ FFF+ I + N + F+S+ D Sbjct: 64 LRVPVGFFFE--NGGSGPIDGQTNELNSFLSSKD 95 >gi|163868998|ref|YP_001610228.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018675|emb|CAK02233.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 130 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 77/123 (62%), Gaps = 7/123 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I+ Sbjct: 9 QTKNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIA 68 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKII 120 + L+ PISFF+ + + +DI+++EN D S + L + F ++ K ++ I+ Sbjct: 69 QKLQVPISFFY--ADLLTTDIATKENLSHCNQDTYSEKE-HALLKNFREL-QPKKQKAIL 124 Query: 121 ELV 123 L+ Sbjct: 125 CLL 127 >gi|188581972|ref|YP_001925417.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179345470|gb|ACB80882.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 133 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 4/128 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + K +D+ +G+RI R+ MSQ +LG +G+TFQQVQKYEKG NRVG RLQ Sbjct: 3 IKSNKAATDIDVRIGQRIAALRVNRRMSQTELGTAIGVTFQQVQKYEKGRNRVGGGRLQQ 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L +S F+ D + V D + P G+++ R + + R I+ Sbjct: 63 IATALGVRVSDFYGDEQPAGGDAT----VVFDLLRDPHGIRIARALQSANSAEARNAIVG 118 Query: 122 LVRSIVSS 129 +V ++ SS Sbjct: 119 VVEAVASS 126 >gi|84500271|ref|ZP_00998537.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84392205|gb|EAQ04473.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 100 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 3/101 (2%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I++ LE +SFFF+ D + Sbjct: 1 MTQQQLAERVGIKFQQIQKYETGANRVSASRLWDIADALEVSVSFFFEGLNE--EDTKAS 58 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 D + + L L R + I + + R+++ EL R + Sbjct: 59 NKIPADILGDKEALDLVRSYYAIPEAQ-RRRLFELARVLSD 98 >gi|190895203|ref|YP_001985496.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700864|gb|ACE94946.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 162 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 5/135 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 ++ +PVD++VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ Sbjct: 25 RESAHPVDLHVGQQIRIRRMQSDVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELAN 84 Query: 65 VLESPISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+S FF+ P + +++ ++ + +IST +G +L + + +VR +++ Sbjct: 85 CLKIPVSKFFEGLPDPETSQDAIHATKIDDRIAYISTAEGRRLIEDVLLLP-ARVRSRVV 143 Query: 121 ELVRSIVSSEKKYRT 135 LV SIV E K ++ Sbjct: 144 ALVSSIVDEEMKEQS 158 >gi|163869006|ref|YP_001610236.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018683|emb|CAK02241.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 142 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 82/123 (66%), Gaps = 11/123 (8%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ DI++G++IR RR +L MSQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I+ Sbjct: 9 PTKNPHFNDISIGRKIRFRREMLKMSQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIA 68 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++L+ I FF+ +DIS++E+ ++ + S + L + F ++ K ++ I+ Sbjct: 69 DILDISIFFFY-------ADISTKEHVLLPYEEMTSNQEEHTLLKSFRELK-PKQQKAIL 120 Query: 121 ELV 123 L+ Sbjct: 121 CLI 123 >gi|218510475|ref|ZP_03508353.1| probable transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 98 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 5/97 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDSYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTV-----CSDISSEENNVMDFI 95 EVL + SFFF+ + D + V +F+ Sbjct: 62 EVLHTSPSFFFEQGDSGPVAVRGLDGPDHTDPVAEFL 98 >gi|197106408|ref|YP_002131785.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479828|gb|ACG79356.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 124 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D+++G+++R RR +LG++Q++L G+ FQQ+QKYE NR+ A+RL ++E+L++ Sbjct: 2 DEIDLHLGRKLRRRRKMLGLTQQELAGACGVRFQQIQKYECAANRMSAARLWKLAEILDA 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 P+S+F++ D + + +L + + + D + R++++EL +++ Sbjct: 62 PVSYFYEGLSEAQRQAHEAFREPDDVFTRKETRELIQAYYAL-DERPRRQLLELAKAMNG 120 Query: 129 S 129 Sbjct: 121 D 121 >gi|288960030|ref|YP_003450370.1| transcriptional regulator [Azospirillum sp. B510] gi|288912338|dbj|BAI73826.1| transcriptional regulator [Azospirillum sp. B510] Length = 196 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 6/122 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD+ VG+R+R RM+ G+SQ + LG+TFQQ+QKYE+G NRV +SRL + + Sbjct: 44 NEVDVFVGQRLRELRMLAGLSQSDVASALGLTFQQLQKYERGFNRVSSSRLFTLGQFFRV 103 Query: 69 PISFFFDV----SPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P+S FF+ P + + + + + L L RYF I D +R I EL Sbjct: 104 PVSVFFEGLENREPVAEGGVRPAAGGEEQENTLQSREALMLARYFQSIRDPHIRGAIREL 163 Query: 123 VR 124 Sbjct: 164 AE 165 >gi|240850955|ref|YP_002972355.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268078|gb|ACS51666.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 119 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IR RR +L MSQ+ LG LG+TFQQ+QKYEKG+NRV A RL+ IS++L+ PI Sbjct: 8 IDLFVGKKIRFRRKMLKMSQKTLGHHLGVTFQQIQKYEKGLNRVSAGRLKEISDILDVPI 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +FF+ T + + S+ + L + F + VK ++ I++L+ Sbjct: 68 AFFYADIITKKHTPYHHD----EIASSKEEYLLLKSFRILTSVK-QKAILKLI 115 >gi|197104103|ref|YP_002129480.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] gi|196477523|gb|ACG77051.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] Length = 136 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 2/126 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K P+P+DI +G +R+RR +GMSQE L E G++FQQ+QKYE G NR+ SRL I+ Sbjct: 5 STKAPDPMDIALGAAVRIRRRTIGMSQEALAEQCGVSFQQIQKYENGANRISFSRLVQIA 64 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L ++ DV + +++ + ++ + TP L+L + ++ + R ++ L+ Sbjct: 65 RALRCRVTDLMDVFDGPDRETATDLD-LLTRMRTPGALELLAAYERLA-PEARSSLVSLL 122 Query: 124 RSIVSS 129 R++ Sbjct: 123 RTVAPE 128 >gi|197103372|ref|YP_002128750.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480648|gb|ACG80175.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 145 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 83/133 (62%), Gaps = 5/133 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG+R+RLRR LG+SQ L + LG+TFQQ+QKYE+G NR+ AS+L I+++L Sbjct: 4 APNPVDVHVGRRVRLRRRELGVSQAWLADRLGLTFQQIQKYERGANRISASKLYAIAKLL 63 Query: 67 ESPISFFFDVSPTVCSDIS-----SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 E PI++FF+ + + V + ++ P+G QL F+ I +R+ + E Sbjct: 64 EVPITYFFEGLDDPATPTGRQYAQAFTGVVEELLAEPNGPQLAEAFLSIRRRSIRKGLAE 123 Query: 122 LVRSIVSSEKKYR 134 L +I ++++ Sbjct: 124 LAPAIAANDQAQA 136 >gi|329891157|ref|ZP_08269500.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846458|gb|EGF96022.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 123 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 4/118 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ +R+ LG +Q LG+ LG+TFQQVQKYEKG NR+ AS+L I+ I +FF+ Sbjct: 2 GRRVCEKRIALGYNQTDLGQALGVTFQQVQKYEKGANRISASKLWDIARFFRVDIGYFFE 61 Query: 76 VSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +E E V DF +T +++ R ++ + ++ +++L+R +V + Sbjct: 62 GLTGAAQPGMAEGEAEPFVHDFPATRQTIEIGRLAPRLSS-RQQKLVVDLMRELVEDD 118 >gi|220926095|ref|YP_002501397.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950702|gb|ACL61094.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 121 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 KI VD VG RI R G+SQ LG +G+TFQQVQKYEKGVNRVGASRL+ + V Sbjct: 3 KITTDVDRAVGARITTLRKAKGLSQTALGAAIGVTFQQVQKYEKGVNRVGASRLRESARV 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L+ P++ F + D + ++ + L R + + + R+ ++ L+ + Sbjct: 63 LDVPVAALFGTEESQAGD-----GEIFGLLTMAGAVDLLRAYEAMSPER-RRALLTLLTA 116 Query: 126 IVSS 129 + S Sbjct: 117 VEGS 120 >gi|240851124|ref|YP_002972526.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268247|gb|ACS51835.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 6/123 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ +DI +GKRIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG NRV L I+ Sbjct: 2 PTKNPHFIDILIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKII 120 + LE P++FF+ DIS++E + S + L + F ++ K ++ I+ Sbjct: 62 QKLEVPMNFFY-ADIVTKEDISTKETLSHHDQETYSEKEQ-ALLKNFRELKS-KKQKAIL 118 Query: 121 ELV 123 L+ Sbjct: 119 WLI 121 >gi|167647751|ref|YP_001685414.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350181|gb|ABZ72916.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 129 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 6/125 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D+ VG RIR++R L +SQ+ L + LG+TFQQVQKYE+G NRV AS L I+ L+ Sbjct: 7 PDPIDVAVGTRIRVQRRHLKISQDDLAQVLGLTFQQVQKYERGTNRVSASMLVRIAAKLQ 66 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + + D++ ++ +STP + L R + Q K R+ I+ + R++V Sbjct: 67 TTVGSLVGEDVVAEQDVA-----MLTALSTPGAIDLLRAYGQAT-PKGRKAILNVARTLV 120 Query: 128 SSEKK 132 + Sbjct: 121 EPDDS 125 >gi|163868772|ref|YP_001609996.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018443|emb|CAK02001.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 119 Score = 117 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 48/113 (42%), Positives = 74/113 (65%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRL+R ILGMSQ+ LG+ LG++FQQ+QKYEKG+NRV A RL+ IS++L P+ Sbjct: 8 IDLFVGKKIRLKRKILGMSQKTLGDALGVSFQQIQKYEKGLNRVSAGRLKEISDILNVPV 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 FF+ T + E + S+ + L + F + VK ++ I++L+ Sbjct: 68 FFFYTDIITNENTSYPHE----EIASSKEEFLLLKSFRVLTSVK-QKTILKLI 115 >gi|13475238|ref|NP_106802.1| hypothetical protein mlr6265 [Mesorhizobium loti MAFF303099] gi|14025989|dbj|BAB52588.1| mlr6265 [Mesorhizobium loti MAFF303099] Length = 215 Score = 117 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 4/119 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K P+P D +VG++I R+ +SQ +L +G++FQQ+QKYE NRV AS L I+ Sbjct: 24 SKSRPHPADQHVGRQIATVRLQSDVSQAQLARAIGVSFQQLQKYENARNRVSASMLYEIA 83 Query: 64 EVLESPISFFFDVSPTVCSDISSEE---NNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L+ P+S FF+ + + ++FI++ +G +L +++ +VR ++ Sbjct: 84 RSLDVPVSRFFEGLLGNEISGETSPLPIDERIEFIASAEGRRLIEGLMRLH-PRVRSRV 141 >gi|240851107|ref|YP_002972509.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268230|gb|ACS51818.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 156 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 77/122 (63%), Gaps = 4/122 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ +DI +GKRIR RR+ +G+SQ++LG L ++FQQ+QKYEK +NRV A L I+ Sbjct: 35 PTKNPHFIDILIGKRIRHRRISIGLSQKELGSHLSVSFQQIQKYEKDLNRVSAKCLLEIA 94 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNV-MDFISTPD-GLQLNRYFIQIDDVKVRQKIIE 121 + L+ P++FF+ + D+S++E + +D + + L + F ++ K ++ I+ Sbjct: 95 QKLDVPVNFFY-ADLAIKEDLSTKETLLHLDQCTYSEKEHTLLKNFRELK-AKKQKAILW 152 Query: 122 LV 123 L+ Sbjct: 153 LI 154 >gi|163869008|ref|YP_001610238.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018685|emb|CAK02243.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 126 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 52/123 (42%), Positives = 82/123 (66%), Gaps = 11/123 (8%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ DI +GKRIRLRR +L +SQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I+ Sbjct: 9 PTKNPHSNDILIGKRIRLRREMLKISQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIA 68 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++L+ I FF+ +DIS++E+ ++ + S + L + F ++ K ++ I+ Sbjct: 69 DILDISIFFFY-------ADISTKEHVLLPYEEMTSNQEEHTLLKSFRELK-PKQQKAIL 120 Query: 121 ELV 123 L+ Sbjct: 121 CLI 123 >gi|83949849|ref|ZP_00958582.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837748|gb|EAP77044.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 99 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 4/101 (3%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I+ ++ +SFFFD + S Sbjct: 1 MTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIAGAMDVDVSFFFDGLERADAAAPSA 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 D + + L L R + I + + R+++ EL R + Sbjct: 61 AG---DLLGDKEALDLVRSYYSIPENQ-RRRLFELARVLSD 97 >gi|240851129|ref|YP_002972531.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268252|gb|ACS51840.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K PN +DI +GKRIR RR+ + +SQ+ LG LG++FQQ+QKYEKG NRV L I+ Sbjct: 2 QTKNPNFIDILIGKRIRQRRIAMELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + LE P+SFF+ T + ++ + + S + L + F ++ K ++ I+ L+ Sbjct: 62 QKLEVPMSFFYADLATKENLSTNASHCEQETYSEKEQ-ALLKNFRELK-TKKQKAILWLI 119 >gi|222825161|dbj|BAH22318.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 133 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +P+D +G+RIR RR++ G SQ LG+ LGI+FQ +Q YE G R+ RL ++E L Sbjct: 3 IQHPIDKQIGERIRKRRLMCGFSQRDLGKKLGISFQHIQGYETGEVRLIVDRLYKLAEAL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S+FF + D + + + + + +L R + +I D +R + +++++ Sbjct: 63 SVDMSYFFTKASEDLHDKAFRSD-----VGSEEISRLVREYRKIKDEALRDIVHLVIKAL 117 Query: 127 V 127 Sbjct: 118 A 118 >gi|163869150|ref|YP_001610390.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018837|emb|CAK02395.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 157 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 44 IDLLVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPI 103 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T + + IS+ + L + F + +K R I+ L+ Sbjct: 104 SFFYADIITKQQPPHHHD----EVISSTEEYLLLKRFRTLTSIKQR-AILHLI 151 >gi|163869143|ref|YP_001610382.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018829|emb|CAK02387.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 54/113 (47%), Positives = 72/113 (63%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR L MSQ LG LGI+FQQVQKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLFVGKKIRLRRKRLKMSQTTLGNALGISFQQVQKYEKGLNRVSAGRLMEISDILNVPI 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T +SS + + IS + QL + F + +K R I++L+ Sbjct: 68 SFFYADIITKQHALSSHD----EVISNTEEYQLLKKFRVLTTIKKR-AILQLL 115 >gi|302381689|ref|YP_003817512.1| hypothetical protein Bresu_0574 [Brevundimonas subvibrioides ATCC 15264] gi|302192317|gb|ADK99888.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 128 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 78/123 (63%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D+++G+R+R RR +LG++Q++L +GI FQQ+QKYE G NR+ A+RL +SE L Sbjct: 1 MATDIDLHLGRRLRRRRRLLGLTQQQLAIQVGIRFQQIQKYECGANRISAARLWQLSEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E+PIS+F+D + N + S + L L + + Q+ + + R+++++L +S+ Sbjct: 61 ETPISYFYDGLAEAMERRETASANGGEMFSRKETLDLIQAYYQLGE-RPRRRLLDLAKSL 119 Query: 127 VSS 129 S Sbjct: 120 HSE 122 >gi|240851111|ref|YP_002972513.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268234|gb|ACS51822.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 6/123 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ +DI +GKRIR RR+ + +SQ+ LG LG++FQQ+QKYEKG NRV L I+ Sbjct: 2 PTKNPHFIDILIGKRIRHRRISIELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKII 120 + LE P++FF+ DIS++E + S + L + F + K ++ I+ Sbjct: 62 QKLEVPMNFFY-ADIVTKEDISTKETLSHHDQETYSEKE-HALLKNFRDL-QPKKQKAIL 118 Query: 121 ELV 123 L+ Sbjct: 119 WLI 121 >gi|163869148|ref|YP_001610388.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018835|emb|CAK02393.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLLVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPI 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T + + IS+ + L + F + +K R I+ L+ Sbjct: 68 SFFYADIITKQQPPHHHD----EVISSTEEYLLLKRFRTLTSIKQR-AILHLI 115 >gi|315498606|ref|YP_004087410.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315416618|gb|ADU13259.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 127 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 66/98 (67%), Gaps = 1/98 (1%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEE 88 +Q++L +GI FQQ+QKYE G NR+ A+RL +++ LE+P+++F+D +++++ + Sbjct: 23 TQQQLALAVGIRFQQIQKYECGANRISAARLFQLAKALETPVTYFYDGLEDNTTEVAAVQ 82 Query: 89 NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 N ++ S + L L + + ++ + + R+++++L +S+ Sbjct: 83 NEGIEVFSRKETLDLIQAYYRLSE-RPRRRLLDLAKSL 119 >gi|240851105|ref|YP_002972507.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268228|gb|ACS51816.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 77/122 (63%), Gaps = 4/122 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ +DI +GKRIR RR+ +G+SQ++LG L ++FQQ+QKYEK +NRV A L I+ Sbjct: 2 PTKNPHFIDILIGKRIRHRRIAMGVSQKELGCHLSVSFQQIQKYEKDLNRVSAKCLLEIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNV-MDFISTPD-GLQLNRYFIQIDDVKVRQKIIE 121 + L+ P++FF+ + D+S++E + +D + + L + F ++ K ++ I+ Sbjct: 62 QKLDVPVNFFY-ADLAIKEDLSTKETLLHLDQCTYSEKEHTLLKNFRELKS-KKQKAILW 119 Query: 122 LV 123 L+ Sbjct: 120 LI 121 >gi|317016318|gb|ADU85831.1| transcriptional regulator [Bartonella sp. TT0105] Length = 118 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 5/120 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K + D++VGK+IRLRR +L MSQ++LGE LG+TFQQ+QKYEK NR+GA RLQ I+ Sbjct: 2 QSKNQHVNDLSVGKKIRLRREMLKMSQKQLGELLGVTFQQIQKYEKATNRIGAGRLQEIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ ISFF+ T S + + IS+ + L + F Q+ + K ++ I+ L+ Sbjct: 62 DIFNVDISFFY----TDISKEKKFPHPYDEGISSKEEYFLLKGFRQL-NPKKQKAILWLI 116 >gi|329849657|ref|ZP_08264503.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328841568|gb|EGF91138.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 127 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEE 88 +Q++L +GI FQQ+QKYE G NR+ A+RL +++ LE+PI++F+D +++++ Sbjct: 23 TQQQLALAVGIRFQQIQKYECGANRISAARLFQLAKALETPINYFYDGLSDEKTEVAAVN 82 Query: 89 NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 N ++ S + L L + + ++ + + R+++++L +S+ ++ Sbjct: 83 NEGIEVFSRKETLDLIQAYYRLSE-RPRRRLLDLAKSLNGESEQ 125 >gi|83955346|ref|ZP_00964001.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83840339|gb|EAP79513.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 103 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I+ L +S FF+ Sbjct: 1 MTQQRLAELVGIKFQQIQKYETGANRVSASRLWDIAFALNVDVSHFFEGLEAEKPQPEKA 60 Query: 88 ENNV-MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +N+ D + + L R + I + + R+++ EL R + Sbjct: 61 LDNIPADLSGDKEAMDLIRSYYAIPENQ-RRRLFELARVLSD 101 >gi|254419275|ref|ZP_05032999.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185452|gb|EDX80428.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 118 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG RI RR LG+SQ LG +G++ QQVQKYE G NR+ ASRL +++ L P+ Sbjct: 1 MDAVVGARIASRRTALGLSQTALGALIGVSCQQVQKYEGGQNRISASRLHNLALALGLPV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF P + E ++M + +TP+G + F +I+D VRQ + LV + + Sbjct: 61 GAFF---PEPADEAEIPELSMMRTMAATPEGRAMAAGFSRIEDRAVRQALTRLVEVLSRA 117 >gi|222101983|ref|YP_002546573.1| hypothetical protein Arad_12024 [Agrobacterium radiobacter K84] gi|221728100|gb|ACM31109.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 150 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 4/108 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +PVD VG++IR++R+ +SQ +LG+ +GI++QQVQKYE G NRV AS L Sbjct: 20 AETLSRIHPVDFYVGQQIRIQRVRANLSQTELGKGVGISYQQVQKYEVGTNRVSASMLWE 79 Query: 62 ISEVLESPISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNR 105 I L + FFD P + IS + N + FI+T +G +L Sbjct: 80 IGNFLNVLPAMFFDGLPESGAGDLTQISPQANESLAFIATTEGRELVE 127 >gi|302383125|ref|YP_003818948.1| hypothetical protein Bresu_2014 [Brevundimonas subvibrioides ATCC 15264] gi|302193753|gb|ADL01325.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 130 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 71/122 (58%), Gaps = 5/122 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D++VG+++ R ++G+SQ +G +G+TFQQVQKYE+G NR+ AS L ++E L P+ Sbjct: 13 LDVHVGRQLIAARTLMGLSQSDVGRLVGVTFQQVQKYERGTNRISASVLWTLAEKLNLPV 72 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++FF+ + V + G+++ F ++ K ++ +++L RS SS+ Sbjct: 73 TYFFEGLDEGTVRT---PDFVFASLG-KVGVEMADAFAKL-SPKRQRLLLDLARSFASSD 127 Query: 131 KK 132 Sbjct: 128 DS 129 >gi|163869007|ref|YP_001610237.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018684|emb|CAK02242.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 135 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 81/121 (66%), Gaps = 11/121 (9%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI +GKRIRLRR +L +SQ++LG+ L +TFQQ+QKYEKG+NRVGA RLQ I+++ Sbjct: 4 KNPHSNDILIGKRIRLRREMLKISQKQLGDRLSVTFQQIQKYEKGLNRVGAGRLQEIADI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L+ I FF+ +DIS++E+ ++ + + + L + F ++ K ++ I+ L Sbjct: 64 LDISIFFFY-------ADISTKEHVLLPYEEMTLSQEEHTLLKSFRELK-PKQQKAILCL 115 Query: 123 V 123 + Sbjct: 116 I 116 >gi|240851038|ref|YP_002972438.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268161|gb|ACS51749.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 126 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 5/118 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + DI++GK+IR RR ++G SQ++LG LG+TFQQ+QKYEKG+NRV A RLQ I+ + Sbjct: 4 KNLHFYDISLGKKIRFRRNLMGFSQKQLGSHLGVTFQQIQKYEKGLNRVSARRLQEIAHI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ P+SFF+ + + ++ V S + L L + F + K R I++L+ Sbjct: 64 LDVPVSFFYADNTKKEDPLYHCDDRVE---SKAEYL-LLKSFRMMTRKKQR-AILQLI 116 >gi|254487347|ref|ZP_05100552.1| transcriptional Regulator, XRE family [Roseobacter sp. GAI101] gi|214044216|gb|EEB84854.1| transcriptional Regulator, XRE family [Roseobacter sp. GAI101] Length = 121 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 10/122 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGK+++ R + +SQ + + L ++FQQ+QKYE G NRV ASRL ++++L Sbjct: 3 MSHPVDIHVGKKLKQIRTLRRLSQTDVAKQLKLSFQQIQKYEIGSNRVAASRLFELAQIL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + SFFF+ +D + + +++ I D ++ +I+ + I Sbjct: 63 DVSPSFFFEGLHDNTNDAPKSDPS----------IEIVSALASIKDDAIKSRIVTFIEDI 112 Query: 127 VS 128 Sbjct: 113 SG 114 >gi|163869151|ref|YP_001610391.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018838|emb|CAK02396.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L I Sbjct: 8 IDLFVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVSI 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T + + IS + L + F + +K R I++L+ Sbjct: 68 SFFYADIITKQQPPHHHD----EVISNTEEYLLLKRFRTLTSIKQR-AILQLI 115 >gi|83855020|ref|ZP_00948550.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83842863|gb|EAP82030.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 119 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 10/118 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGK+++ R + +SQ + + L ++FQQ+QKYE G NRV ASRL +S++L Sbjct: 1 MSHPVDIHVGKKLKQIRTLRRLSQTDVAKRLNLSFQQIQKYEIGSNRVAASRLFELSQIL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ++FF+ +D + + +++ I+D ++ +I+ + Sbjct: 61 DVTPAYFFEGLHDNTNDAPKADPS----------IEIVNALAAINDDALKTRIVTFIE 108 >gi|58699289|ref|ZP_00374080.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] gi|58534197|gb|EAL58405.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] Length = 124 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 5/121 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I +P+D +G+RIR RR++ G SQ LG+ L I+FQ VQ YE G R+ RL ++EVL Sbjct: 3 IQHPIDKQIGERIRKRRLMCGFSQRDLGKKLEISFQHVQGYESGEIRLVVDRLYKLAEVL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S+FF + D + + + + + +L R + +I+D +R + +++++ Sbjct: 63 SVDMSYFFTKASEDLHDKAFHSD-----VGSEEISRLVREYRKIEDETLRDIVHLVIKAL 117 Query: 127 V 127 Sbjct: 118 A 118 >gi|83941543|ref|ZP_00954005.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83847363|gb|EAP85238.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 119 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 10/118 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGK+++ R + +SQ + + L ++FQQ+QKYE G NRV ASRL +S++L Sbjct: 1 MSHPVDIHVGKKLKQIRTLRRLSQTDVAKRLNLSFQQIQKYEIGSNRVAASRLFELSQIL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ++FF+ +D + + +++ I+D ++ +I+ + Sbjct: 61 DVTPAYFFEGLHDNTNDAPKADPS----------IEIVSALAAINDDALKTRIVTFIE 108 >gi|86360041|ref|YP_471931.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86284143|gb|ABC93204.1| probable transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 114 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 44/98 (44%), Positives = 65/98 (66%), Gaps = 5/98 (5%) Query: 39 ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT-----VCSDISSEENNVMD 93 +TFQQVQKYEKG+NR+GASRLQ I+EVL + SFFF+ + + + + V + Sbjct: 1 MTFQQVQKYEKGINRIGASRLQRIAEVLHTSPSFFFEQNESQPLSLQGLALPDGADPVAE 60 Query: 94 FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 F+ T +GL LNR F++I D +R+ II LV+++ +E Sbjct: 61 FLRTKEGLVLNRAFLKIADPDIRETIIALVKAMAQAES 98 >gi|163744744|ref|ZP_02152104.1| HTH-type transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] gi|161381562|gb|EDQ05971.1| HTH-type transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] Length = 127 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VG+R++ R + SQ + L ++FQQ+QKYE G NR+ ASRL ++ +L Sbjct: 10 MSHPVDIHVGRRLKQARTLRKQSQTDVARELKLSFQQIQKYEIGSNRIAASRLHELARIL 69 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +FF+ + ++ L + I D +R +I+ + + Sbjct: 70 DVTPGYFFEGLNDDAPETKNDP-----------ALDIVNAIGSIKDDAIRARILTFIEDV 118 Query: 127 VS 128 Sbjct: 119 AG 120 >gi|209964814|ref|YP_002297729.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209958280|gb|ACI98916.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 232 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +V RIRLRR +LGMSQ L LGITFQQVQKYE+G NRV +L ++E+L+ P+ Sbjct: 17 IESHVASRIRLRRGLLGMSQSDLARTLGITFQQVQKYERGSNRVSVGKLYRLAEILDVPL 76 Query: 71 SFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +FFFD ++ I + L L R + +V + L+R+I Sbjct: 77 TFFFDGLDLPDLKKPPQTTTGFAEQQSPILSRRELDLLRAWKN-SPPEVSDAVASLLRAI 135 Query: 127 V 127 Sbjct: 136 A 136 >gi|254419648|ref|ZP_05033372.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185825|gb|EDX80801.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 139 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 10/122 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NPVD++VG+R+ RR L SQ +L + G+TFQQ+QKYE+G NR+ ASRL I+E L Sbjct: 15 NPVDLHVGRRVAERRQALRYSQAQLAQAAGVTFQQIQKYERGSNRIAASRLWEIAEFLNV 74 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELVRSI 126 +++FF+ + M T ++ R + ++ VR + +++L++ + Sbjct: 75 DLNYFFEGL-----GLPDGPEARMGGAPTKQTAEIAR---RAPELSVRNQKLVLDLIQQL 126 Query: 127 VS 128 Sbjct: 127 AR 128 >gi|240851231|ref|YP_002972634.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268354|gb|ACS51942.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 5/114 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+ +GK+IRL+R +L MSQ LG+ LG+TFQQ+QKYEKG+NRV A RL IS++L P Sbjct: 7 DIDLFIGKKIRLKRKMLKMSQTTLGQHLGVTFQQIQKYEKGLNRVSAGRLMEISDILNVP 66 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 I+FF+ T + + S+ + L + F + VK ++ ++L+ Sbjct: 67 ITFFYADIITKQQPPYHHD----EIASSTEEYLLLKRFRTLTTVK-KKAFLQLI 115 >gi|222149186|ref|YP_002550143.1| transcriptional regulator HTH family [Agrobacterium vitis S4] gi|221736171|gb|ACM37134.1| transcriptional regulator HTH family [Agrobacterium vitis S4] Length = 134 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 1 MVGNKKIPNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M KK P+ D N+ G+R++ R GMSQ + LG+TFQQ+ KYEKG+N + ASR Sbjct: 1 MTLLKKTPDVHDYNILAGERLKSARKNKGMSQADVARKLGVTFQQLHKYEKGINGMSASR 60 Query: 59 LQHISEVLESPISFFFDVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 L + +L FF+ V D SSE +++ S D L+LN F I + R Sbjct: 61 LAAAATLLGMDPDFFYTADSAVAPSKDTSSELTDLVKATSRSDALELNTCFASIKNSNTR 120 Query: 117 Q 117 + Sbjct: 121 K 121 >gi|254420597|ref|ZP_05034321.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186774|gb|EDX81750.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 133 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 76/123 (61%), Gaps = 4/123 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D+++G+R+R RR +LG++Q++L +GI FQQ+QKYE G NR+ A+RL ++E L Sbjct: 4 MATDIDLHLGRRLRRRRRLLGLTQQQLAVQVGIRFQQIQKYECGANRISAARLWQLAEAL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 E+P+S+F+D + + S + L L + + Q+ + + R+++++L Sbjct: 64 ETPVSYFYDGVTEALERKDAAPGTSAGGGEMFSRKETLDLIQAYYQLGE-RPRRRLLDLA 122 Query: 124 RSI 126 +S+ Sbjct: 123 KSL 125 >gi|218670926|ref|ZP_03520597.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli GR56] Length = 98 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 5/101 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ L+ + Sbjct: 1 MDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAGALKVDV 60 Query: 71 SFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FFD +P +D + +F+ + +G+ LN F Sbjct: 61 RTFFDDLSTPDTANDNPAPSE---EFVISREGVLLNAAFFS 98 >gi|240851232|ref|YP_002972635.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268355|gb|ACS51943.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 116 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 4/104 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GK+IRL+R +L MSQ+ LG+ LG+TFQQ+QKYEKG+NRV A RL IS++L P+ Sbjct: 8 IDLFIGKKIRLKRKMLKMSQKTLGQHLGVTFQQIQKYEKGLNRVSAGRLMEISDILNVPL 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 SFF+ T + + S+ + L + F + V Sbjct: 68 SFFYADIITKKQPPYHHD----EIASSTEEYLLLKRFRTLTTVN 107 >gi|118785|sp|P15017|DNU4_RHORU RecName: Full=Uncharacterized transcriptional regulator in ATPase CF(0) region; AltName: Full=URF4 gi|46375|emb|CAA31250.1| ORF 4 (AA 1 - 108); homolog. to DNA-binding proteins [Rhodospirillum rubrum] gi|152603|gb|AAA26459.1| pot. DNA-binding protein (URF4); putative [Rhodospirillum rubrum] Length = 108 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/75 (44%), Positives = 49/75 (65%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + + VD +VG+R+R RR L + QE L +G++FQQ+QKYE+G NR+ ASRL I+ Sbjct: 5 DTRTIHHVDAHVGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDIA 64 Query: 64 EVLESPISFFFDVSP 78 + L PI +FF Sbjct: 65 KALAVPIDYFFSDLE 79 >gi|255263044|ref|ZP_05342386.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105379|gb|EET48053.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 118 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 8/124 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRI+ R++ G SQ ++ L I+FQQ+QKYE G NR+ ASRL +S++ Sbjct: 1 MVHPVDVHVGKRIKEARILRGQSQSEIARELDISFQQIQKYESGKNRISASRLFELSQLF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 SFFFD + + ++ ++I + + R +I L + + Sbjct: 61 GISPSFFFDGLEEGADERKQP--------MDAETARIALAILKIPNKRTRSLLISLAQEV 112 Query: 127 VSSE 130 E Sbjct: 113 SREE 116 >gi|67459118|ref|YP_246742.1| transcriptional regulator [Rickettsia felis URRWXCal2] gi|67004651|gb|AAY61577.1| Predicted transcriptional regulator [Rickettsia felis URRWXCal2] Length = 130 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 12/134 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQ 117 I+E L+ I +FF+ EE N + T ++++R F++I+ + +Q Sbjct: 61 LIAEALDRNIDYFFEGL---------EEANKPQPVHTQHQRMCIEVSRNFMKINSTEEQQ 111 Query: 118 KIIELVRSIVSSEK 131 + LV+ + EK Sbjct: 112 AVNNLVKCLAGKEK 125 >gi|15604357|ref|NP_220873.1| hypothetical protein RP497 [Rickettsia prowazekii str. Madrid E] gi|51473681|ref|YP_067438.1| hypothetical protein RT0484 [Rickettsia typhi str. Wilmington] gi|7388420|sp|Q9ZD50|Y497_RICPR RecName: Full=Uncharacterized HTH-type transcriptional regulator RP497 gi|3861049|emb|CAA14949.1| unknown [Rickettsia prowazekii] gi|51459993|gb|AAU03956.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] gi|292572112|gb|ADE30027.1| Putative transcriptional regulator [Rickettsia prowazekii Rp22] Length = 130 Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 12/134 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +G++I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQ 117 I+E L+ I +FF+ EE N + T ++++R F++I+ + +Q Sbjct: 61 LIAEALDRNIDYFFEGL---------EEANKPQPVHTQHQRMCIEVSRNFMKINSTEEQQ 111 Query: 118 KIIELVRSIVSSEK 131 I LV+ + EK Sbjct: 112 AINNLVKCLAGKEK 125 >gi|240851233|ref|YP_002972636.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268356|gb|ACS51944.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GK+IRL+R +L MSQ LG+ LG+TFQQ+QKYEKG+NRV A RL IS++L P+ Sbjct: 8 IDLFIGKKIRLKRKMLKMSQTTLGQHLGVTFQQIQKYEKGLNRVSAGRLMEISDILNVPL 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T + + S+ + L + F + VK ++ ++L+ Sbjct: 68 SFFYADIITKKQPPYHHD----EIASSTEEYLLLKRFRTLTMVK-KKAFLQLI 115 >gi|157964557|ref|YP_001499381.1| putative transcriptional regulator [Rickettsia massiliae MTU5] gi|157844333|gb|ABV84834.1| Putative transcriptional regulator [Rickettsia massiliae MTU5] Length = 131 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 13/135 (9%) Query: 1 MVGNKK-IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+G K I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MMGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVR 116 I+E L+ I +FF+ EE N + T ++++R F++I+ + + Sbjct: 61 VLIAEALDRNIDYFFEGL---------EEANKPRPVHTQHQRMCIEVSRNFMKINSTEEQ 111 Query: 117 QKIIELVRSIVSSEK 131 Q + LV+ + EK Sbjct: 112 QAVNNLVKCLAGKEK 126 >gi|254418112|ref|ZP_05031836.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196184289|gb|EDX79265.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 124 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 6/124 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K +P+DI VG RIR R G+SQ LG+ +GITFQQVQKYE G NRV AS+L I+ Sbjct: 2 EKQVHPIDIQVGARIRTFREAAGISQHHLGKDIGITFQQVQKYETGANRVSASKLYLIAR 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L I+ + E V++ ++ +L + QID + R +I++ + Sbjct: 62 RLGVSIA------EIIGEVEDGERATVVESLTVARTHELLAAWNQIDTPEKRALLIDVAQ 115 Query: 125 SIVS 128 + + Sbjct: 116 TFAA 119 >gi|157803756|ref|YP_001492305.1| transcriptional regulator [Rickettsia canadensis str. McKiel] gi|157785019|gb|ABV73520.1| Predicted transcriptional regulator [Rickettsia canadensis str. McKiel] Length = 130 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 12/134 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQ 117 I+E L+ I +FF+ EE N + T ++++R F++I+ + +Q Sbjct: 61 LIAEALDRNIDYFFEGL---------EEANKPQPVHTQHQRMCIEVSRNFMKINSTEEQQ 111 Query: 118 KIIELVRSIVSSEK 131 I LV+ + EK Sbjct: 112 AINNLVKCLAGKEK 125 >gi|254462264|ref|ZP_05075680.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678853|gb|EDZ43340.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 133 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 13/128 (10%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G RI+ RR+ L +SQ KL E +G+ FQQVQKYE G NRV ASRL ++E L PI Sbjct: 4 IDVLIGARIKGRRIALKISQTKLAEAVGVRFQQVQKYESGANRVSASRLLMVAETLGVPI 63 Query: 71 SFFFDVSPTVCSDISSE------ENNVMDFIST---PDGLQLNRYFIQIDDVKVRQKIIE 121 S+FF S S++ M+ +S + L L + + + ++ Sbjct: 64 SYFFQGLDNAGSADSTDVQPSARATAPMNALSDARVSEILALVETLPK----EQQMAVLA 119 Query: 122 LVRSIVSS 129 +R++ + Sbjct: 120 FLRTLAKT 127 >gi|83594727|ref|YP_428479.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577641|gb|ABC24192.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 180 Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 13/141 (9%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + P+P+D VG+R+RLRR +LG+SQ++L + +GITFQQVQKYE+GVNR+ +SRL Sbjct: 12 YSSDNPDPLDKEVGRRLRLRRKLLGLSQQQLADAVGITFQQVQKYERGVNRLSSSRLWDF 71 Query: 63 SEVLESPISFFFDVSPTV------------CSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + +L +SFFF+ D + + D + + L+L F Sbjct: 72 ATILGVSVSFFFEDLEAADVDRTIPRARRDAQDETITQTTAEDPLVRTETLELCYAFWA- 130 Query: 111 DDVKVRQKIIELVRSIVSSEK 131 +VR++ ++ +++ + EK Sbjct: 131 TTPRVRKRYLDFLKTAATLEK 151 >gi|110678693|ref|YP_681700.1| HTH-type transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109454809|gb|ABG31014.1| HTH-type transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 119 Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 10/118 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VG++++ R + +SQ + L ++FQQ+QKYE G NR+ ASRL +S + Sbjct: 1 MSHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + P S+FF+ + + +++ I D V+ +I+ + Sbjct: 61 DVPTSYFFEGLDAATKTTCERDPS----------MEIVTALANIRDDSVKSRIVTFIE 108 >gi|222825165|dbj|BAH22322.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 120 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 5/119 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +G+RIR RR++ G+SQ LG+ L I+FQ +Q YE G R+ RL +++E L Sbjct: 5 HPIDKQIGERIRKRRLMCGLSQRDLGKKLEISFQHIQGYETGEVRLIVDRLYNLAEALSV 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +S+FF + D + + + + + +L R + +I D + + +++++ Sbjct: 65 DMSYFFTKASEDLHDNAFRSD-----VGSKEISRLVREYRKIKDEILCNIVHSVIKALA 118 >gi|163869145|ref|YP_001610384.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018831|emb|CAK02389.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 82 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 41/63 (65%), Positives = 50/63 (79%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LGI+FQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLFVGKKIRLRRQMLKMSQTTLGNALGISFQQIQKYEKGLNRVSAGRLMEISDILTVPI 67 Query: 71 SFF 73 SFF Sbjct: 68 SFF 70 >gi|163733855|ref|ZP_02141297.1| HTH-type transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161392966|gb|EDQ17293.1| HTH-type transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 119 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 10/118 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VG++++ R + +SQ + L ++FQQ+QKYE G NR+ ASRL +S + Sbjct: 1 MSHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + P S+FF+ + + +++ I D V+ +I+ + Sbjct: 61 DVPTSYFFEGLDAATKTTCERDPS----------MEIVTALANIRDDSVKSRIVTFIE 108 >gi|157825788|ref|YP_001493508.1| hypothetical protein A1C_03595 [Rickettsia akari str. Hartford] gi|157799746|gb|ABV75000.1| hypothetical protein A1C_03595 [Rickettsia akari str. Hartford] Length = 130 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 12/138 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +G++I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQ 117 I+E L+ I +FF+ EE N + T ++++R F++I+ + +Q Sbjct: 61 LIAEALDRNIDYFFEGL---------EEANKPQPVYTQHQRMCIEVSRNFMKINSTEEQQ 111 Query: 118 KIIELVRSIVSSEKKYRT 135 I LV+ + +K + Sbjct: 112 AINNLVKCLAGKDKLKAS 129 >gi|91205491|ref|YP_537846.1| putative transcriptional regulator [Rickettsia bellii RML369-C] gi|157827144|ref|YP_001496208.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389] gi|91069035|gb|ABE04757.1| Putative transcriptional regulator [Rickettsia bellii RML369-C] gi|157802448|gb|ABV79171.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 137 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 12/134 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYE+ +NR+ RL Sbjct: 1 MARKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYERAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQ 117 I+E L+ I +FF+ EE N + T ++++R F++I +Q Sbjct: 61 LIAEALDRNIDYFFEGL---------EEANKPQPVHTQHQRMCIEVSRNFMKIQSTDEQQ 111 Query: 118 KIIELVRSIVSSEK 131 + LV+ + +K Sbjct: 112 AVNNLVKCLAGKDK 125 >gi|89069702|ref|ZP_01157039.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] gi|89044782|gb|EAR50888.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] Length = 96 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 33 LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVM 92 + E +GI FQQ+QKYE G+NRV ASRL I+ VL I FFF+ + ++ + Sbjct: 1 MAEKVGIKFQQIQKYETGMNRVSASRLWDIASVLGVKIDFFFEGLGETETPANAN-DLPG 59 Query: 93 DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + ++ + L+L R + I + + R+++ EL R + + Sbjct: 60 NILTDREALELLRSYYAIPENQ-RKRLFELARVLSEA 95 >gi|34580426|ref|ZP_00141906.1| hypothetical protein [Rickettsia sibirica 246] gi|28261811|gb|EAA25315.1| unknown [Rickettsia sibirica 246] Length = 125 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 12/131 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQ 117 I+E L+ I +FF+ EE N + T +++ R F++I+ + +Q Sbjct: 61 LIAEALDRNIDYFFEGL---------EEANKPQPVHTQHQRMCIEVARNFMKINSTEEQQ 111 Query: 118 KIIELVRSIVS 128 + LV+ + Sbjct: 112 AVNNLVKCLAG 122 >gi|163868802|ref|YP_001610026.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018473|emb|CAK02031.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 96 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 55/68 (80%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGKRIR RR +L MSQ+ LG+ LG++FQQ+QKYEKG+NRV A RL+ IS++L P+ Sbjct: 8 IDLFVGKRIRFRRKMLKMSQKTLGQHLGVSFQQIQKYEKGLNRVSAGRLKEISDILNVPL 67 Query: 71 SFFFDVSP 78 +FF+ +S Sbjct: 68 AFFYTISS 75 >gi|15892591|ref|NP_360305.1| hypothetical protein RC0668 [Rickettsia conorii str. Malish 7] gi|157828542|ref|YP_001494784.1| hypothetical protein A1G_03795 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933258|ref|YP_001650047.1| transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|229586759|ref|YP_002845260.1| Putative transcriptional regulator [Rickettsia africae ESF-5] gi|238650247|ref|YP_002916098.1| transcriptional regulator [Rickettsia peacockii str. Rustic] gi|38503361|sp|Q92HV3|Y668_RICCN RecName: Full=Uncharacterized HTH-type transcriptional regulator RC0668 gi|15619757|gb|AAL03206.1| unknown [Rickettsia conorii str. Malish 7] gi|157801023|gb|ABV76276.1| hypothetical protein A1G_03795 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908345|gb|ABY72641.1| transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|228021809|gb|ACP53517.1| Putative transcriptional regulator [Rickettsia africae ESF-5] gi|238624345|gb|ACR47051.1| transcriptional regulator [Rickettsia peacockii str. Rustic] Length = 125 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 12/131 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQ 117 I+E L+ I +FF+ EE N + T ++++R F++I+ + +Q Sbjct: 61 LIAEALDRNIDYFFEGL---------EEANKPQPVHTQHQRMCIEVSRNFMKINSTEEQQ 111 Query: 118 KIIELVRSIVS 128 + LV+ + Sbjct: 112 AVNNLVKCLAG 122 >gi|114704610|ref|ZP_01437518.1| Transcriptional Regulator, XRE family protein [Fulvimarina pelagi HTCC2506] gi|114539395|gb|EAU42515.1| Transcriptional Regulator, XRE family protein [Fulvimarina pelagi HTCC2506] Length = 117 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 11/127 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + K + +D +VG +I+L R++ G+S+EKLG LGI++QQ+QKYE G NRV A RL Sbjct: 1 MYDTKAASHIDKSVGAKIKLGRLMAGLSREKLGVQLGISWQQIQKYESGANRVSAGRLHQ 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ +L I +FFD + SDI ++ + R F ++ + ++ + Sbjct: 61 IAHILGREIQWFFDEADNEPSDIGPSPRDIG----------MARKFNRLASDR-KKALEA 109 Query: 122 LVRSIVS 128 L+ + Sbjct: 110 LIDEMAR 116 >gi|46201614|ref|ZP_00054686.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 98 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 8/106 (7%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 +LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I++VL P+ FF++ Sbjct: 1 MLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLFEIAQVLGVPVGFFYEGLENRRGSD 60 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S + L+L R F I + + ++ + +L R + + E Sbjct: 61 LSARQRMC--------LELARNFTSITNERHQEALSQLARVLAAEE 98 >gi|49476080|ref|YP_034121.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49476154|ref|YP_034195.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238888|emb|CAF28181.1| Transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238962|emb|CAF28260.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 128 Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 5/112 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A RL+ I+++L PI+ Sbjct: 15 DIFVGKKIRFRRKMLKMSQKTLADHLKVSSQQIQKYETGLNRVSAGRLKEIADILSVPIA 74 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 FF+ D ++ + + S + L + F ++ K ++ I+ L+ Sbjct: 75 FFY-ADLFTKQDTPTQHDEIA---SNREEYFLLKSFRELK-PKKQKAILWLI 121 >gi|91206072|ref|YP_538427.1| hypothetical protein RBE_1257 [Rickettsia bellii RML369-C] gi|157826572|ref|YP_001495636.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389] gi|91069616|gb|ABE05338.1| unknown [Rickettsia bellii RML369-C] gi|157801876|gb|ABV78599.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389] Length = 186 Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 36/153 (23%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +R++ RR+ +G+SQ++LGE L I+ Q++KYE+G++ + SRL ++++L +P+ Sbjct: 31 IDKIASERLKQRRIAIGLSQKELGETLDISAIQIKKYEEGISTIPVSRLYVLAKILNTPL 90 Query: 71 SFFFDVSPTVCSDISSEEN---NVMDFIST------------------------------ 97 FF+ S + +++++N N ++++S Sbjct: 91 KHFFNTSISEEERLNTDDNIFDNEIEYLSNEIDEHLLNNVAEEDEDYEYNIPFSREDLTR 150 Query: 98 ---PDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L L R F +I + VR+ IIELVRS+ Sbjct: 151 TLEREILSLTRAFTKIQNPDVRKIIIELVRSLA 183 >gi|116249916|ref|YP_765754.1| HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254564|emb|CAK05638.1| putative HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 121 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + IS F+ + E +PD L + +++ ++ + +V + Sbjct: 61 DVDISALFEGAGMSPFGSRVE--------LSPDAYALALSYDKLNSPAGKEAVKTIVTLM 112 Query: 127 VSS 129 Sbjct: 113 TGE 115 >gi|218458185|ref|ZP_03498276.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli Kim 5] Length = 110 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 8/113 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + IS F+ + E +PD L + +++ ++ + Sbjct: 61 DVEISVLFEGADMPQFGSRIE--------LSPDAYALALSYDKLNSPAGKEAV 105 >gi|190889812|ref|YP_001976354.1| transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] gi|218512245|ref|ZP_03509085.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli 8C-3] gi|190695091|gb|ACE89176.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] Length = 122 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 8/113 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG IR R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGHNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + IS F+ + E +PD L + +++ ++ + Sbjct: 61 DVEISVLFEGADMPQFGSRIE--------LSPDAYALALSYDKLNSPAGKEAV 105 >gi|218659215|ref|ZP_03515145.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli IE4771] Length = 122 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 8/113 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + IS F+ + E +PD L + +++ ++ + Sbjct: 61 DVEISVLFEGADMPQFGSRIE--------LSPDAYALALSYDKLNSPAGKEAV 105 >gi|222825162|dbj|BAH22319.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 115 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 11/118 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++Q +LG+ +G++++Q+Q+YE G N + ASRL +++ L ++ Sbjct: 7 VQLGKKIKQLRLDRGLTQTELGKRIGVSYRQIQRYENGSNYILASRLYDLAKALSIDVAD 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF T + E + L+L + + +I ++R + LV+S S+ Sbjct: 67 FFTGMHTDSHEAYDE-----------EILKLVKGYNEIKSKRLRSVVYILVKSFSQSD 113 >gi|241207094|ref|YP_002978190.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860984|gb|ACS58651.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 121 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + IS F+ + E +PD L + +++ ++ + +V + Sbjct: 61 DVEISALFEGAGMSPFGSRVE--------LSPDAYALALSYDKLNSPAGKEAVKTIVTLM 112 Query: 127 VSS 129 Sbjct: 113 TGE 115 >gi|86355802|ref|YP_467694.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86279904|gb|ABC88967.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 121 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 8/113 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R I +SQ LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRAIRRVSQLDLGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 IS F+ + E +PD L + +++ ++ + Sbjct: 61 GVEISALFEGTDISEFGGRIE--------LSPDAYALALSYDKLNSTAGKEAV 105 >gi|84684043|ref|ZP_01011945.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667796|gb|EAQ14264.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 120 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 10/122 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P+D+ +G+RIR R+ G++Q++L +G+ FQQ+QKYE NRV SRL IS+ L Sbjct: 1 MKHPIDVFIGRRIREERVAAGLTQKELSILIGVKFQQLQKYETAANRVSGSRLWMISKAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S F + V IS ++ D D L L + K++ ++I VR+I Sbjct: 61 AVPMSSF--LPDGVELPISEKDAEPSDARLMRDILML--------EPKLKLELIRFVRAI 110 Query: 127 VS 128 Sbjct: 111 SR 112 >gi|218508788|ref|ZP_03506666.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 125 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 15/122 (12%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP--- 78 RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ P+S FF+ P Sbjct: 1 RRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEGLPDPE 60 Query: 79 -TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKIIELVRSIVSSEKK 132 T I +E + + +IST +G +L IDD +VR +++ LV SIV E + Sbjct: 61 TTQGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRVVALVSSIVDEEME 114 Query: 133 YR 134 + Sbjct: 115 EQ 116 >gi|209551664|ref|YP_002283581.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537420|gb|ACI57355.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 121 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 8/123 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + IS F+ + E +PD L + +++ ++ + +V + Sbjct: 61 DVEISALFEGAGMSQFGSRIE--------LSPDAYALALSYDRLNSSAGKEAVKTIVTIM 112 Query: 127 VSS 129 Sbjct: 113 SGE 115 >gi|222825166|dbj|BAH22323.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 110 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 68/117 (58%), Gaps = 11/117 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++Q +LG+ +G++++Q+Q+YE G N + ASRL +++ L ++ Sbjct: 1 MELGKKIKELRLYCGLTQTELGKRIGVSYRQIQRYENGSNHILASRLYDLAKALSINVAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF +D+ ++ + D + L+L + + +I ++R + LV+S S Sbjct: 61 FF-------TDVHADSHETYD----EEILKLVKGYNEIRSKRLRSVVYTLVKSFSQS 106 >gi|49476037|ref|YP_034078.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238845|emb|CAF28129.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 119 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 38/75 (50%), Positives = 53/75 (70%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A RL+ I+++L PI+ Sbjct: 15 DIFVGKKIRFRRKMLKMSQKTLADHLKVSPQQIQKYETGLNRVSAGRLKEIADILSVPIA 74 Query: 72 FFFDVSPTVCSDISS 86 FF +S S +SS Sbjct: 75 FFMLISSHNKSTLSS 89 >gi|218658899|ref|ZP_03514829.1| probable transcriptional regulator protein [Rhizobium etli IE4771] Length = 85 Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 38/81 (46%), Positives = 57/81 (70%), Gaps = 6/81 (7%) Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFI 108 GASRLQ+IS +L P+SFFF+ +P S +S N V+DF+S+ +GLQLNR F+ Sbjct: 1 GASRLQNISSILNVPVSFFFEDAPGEHSGAIGGMAETSSSNYVVDFLSSSEGLQLNRAFV 60 Query: 109 QIDDVKVRQKIIELVRSIVSS 129 +I D KVR+K++ELV+++ + Sbjct: 61 KISDPKVRRKVVELVKALAAE 81 >gi|58699287|ref|ZP_00374078.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] gi|58534195|gb|EAL58403.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] Length = 109 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 11/118 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ ++Q +LG+ +G++++Q+QKYE G N V ASRL +++ L ++ Sbjct: 1 MQLGKKIKQLRLDRALTQTELGKRIGVSYRQIQKYENGSNCVLASRLYDLAKALSIDVAN 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF T + E + L+L + + +I ++R + LV+S S+ Sbjct: 61 FFTDMHTDSHEAYDE-----------EILKLVKGYNEIKSKRLRSAVYILVKSFSQSD 107 >gi|254419929|ref|ZP_05033653.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186106|gb|EDX81082.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 117 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 8/118 (6%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVDI +G RIR RR L ++Q +L G+TFQQ+QKYE+GVNRV A+RL I+ VL+ Sbjct: 6 DPVDIAIGARIRARREELRITQAQLAAGAGVTFQQIQKYERGVNRVSAARLLQIAAVLK- 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ++ + E + + ++ P +L F I D + R ++ + + + Sbjct: 65 ------STGAALLGELETAEGDELA-LAAPGVAELLSAFRSIRDAEKRDALLVVAKGL 115 >gi|254562707|ref|YP_003069802.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254269985|emb|CAX25965.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 94 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 3/97 (3%) Query: 39 ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 +TFQQ+QKYE GVNRVGASRL ++ LE P+S FF+ + + + +F+ P Sbjct: 1 MTFQQIQKYENGVNRVGASRLSEVARALEVPVSTFFEEGSGL---VEQGQKEAFEFLRVP 57 Query: 99 DGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + L FI I+D ++R++++ LVRS E+ T Sbjct: 58 GAVDLLNAFITIEDDRLRREVLALVRSATRREQDQGT 94 >gi|49476040|ref|YP_034081.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238848|emb|CAF28132.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 125 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 47/66 (71%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A L+ I+++L I+ Sbjct: 60 DIFVGKKIRFRRKMLKMSQKTLADHLRVSSQQIQKYETGLNRVSAGCLKEIADILNVSIA 119 Query: 72 FFFDVS 77 FF +S Sbjct: 120 FFMPIS 125 >gi|218682257|ref|ZP_03529858.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 119 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 10/113 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + IS F+ S + +PD L + ++ ++ + Sbjct: 61 DVEISALFEGVSQFGSRVEL----------SPDAYALALTYDKLSSSAGKEAV 103 >gi|319409214|emb|CBI82858.1| transcriptional regulator (fragment) [Bartonella schoenbuchensis R1] Length = 95 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 5/96 (5%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 MSQ+ L LGI+FQQ+QKYEKG+NRVGA RL+ I+++ + PISFF+ + T + Sbjct: 1 MSQKTLAHHLGISFQQIQKYEKGLNRVGAGRLKDIADIFDVPISFFYPDTTTKEGGVHHH 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + IS+ + L + F + VK ++ I+EL+ Sbjct: 61 D----EIISSKEEYLLLKSFRVLTSVK-QKAILELI 91 >gi|67458969|ref|YP_246593.1| hypothetical protein RF_0577 [Rickettsia felis URRWXCal2] gi|67004502|gb|AAY61428.1| unknown [Rickettsia felis URRWXCal2] Length = 163 Score = 99.9 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 36/159 (22%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N I +P D +R++ RR+ +G+SQ++LG+ L I+ QV+KYE+G++ + SRL + Sbjct: 2 NDSIKHP-DKLASERLKERRLAVGISQKELGQALDISALQVKKYEEGLSNIPISRLYVFA 60 Query: 64 EVLESPISFFF-------------------------DVSPTVCSDISSEENNVMDFIS-- 96 +VL +P+ +FF ++ ++I+ EE + +S Sbjct: 61 KVLNTPLKYFFNSSEEEKLKTDDENTSNNKIEYLFKEIESDFLNNIAEEEGQYENDVSFD 120 Query: 97 --------TPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L L R F ++ + +R+ IIELVRS+ Sbjct: 121 YKELSRTMERELLSLTRAFTRVQNPNIRKIIIELVRSVS 159 >gi|71083650|ref|YP_266370.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91763309|ref|ZP_01265273.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1002] gi|71062763|gb|AAZ21766.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91717722|gb|EAS84373.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1002] Length = 123 Score = 99.9 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 16/114 (14%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + ++G +++LRR+ LG++Q K+ + + +TFQQ+QKYEKG N V + RL ++ L Sbjct: 1 MEDNFNKHLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLANYL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ------LNRYFIQIDDVK 114 + P+++FF+ +++ + +G L + + ++++ + Sbjct: 61 KVPVNYFFEDFSE----------YLINLERSQEGHMNVNYNFLVKLYSELNNDQ 104 >gi|254456421|ref|ZP_05069850.1| transcription regulator [Candidatus Pelagibacter sp. HTCC7211] gi|207083423|gb|EDZ60849.1| transcription regulator [Candidatus Pelagibacter sp. HTCC7211] Length = 123 Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 53/83 (63%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + ++G +++LRR+ LG++Q K+ + + +TFQQ+QKYEKG N V + RL +S L Sbjct: 1 MEDNFNKHLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLSNYL 60 Query: 67 ESPISFFFDVSPTVCSDISSEEN 89 + PI++FF+ ++ + Sbjct: 61 KVPINYFFEDFSEYLINLEKSQE 83 >gi|163869144|ref|YP_001610383.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018830|emb|CAK02388.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 156 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 54/113 (47%), Positives = 71/113 (62%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGKRIRLRR L MSQ LG LGI+FQQVQKYEKG+NRV A RL IS++L PI Sbjct: 43 IDLLVGKRIRLRRKRLKMSQTTLGNALGISFQQVQKYEKGLNRVSAGRLMEISDILNVPI 102 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T +SS + + IS + L + F + VK R+ ++L+ Sbjct: 103 SFFYADIITKQHALSSHD----EIISNTEEYLLLKRFRTLTTVK-RKAFLQLI 150 >gi|218462730|ref|ZP_03502821.1| putative transcriptional regulator protein [Rhizobium etli Kim 5] gi|218516609|ref|ZP_03513449.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 123 Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 15/120 (12%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP----T 79 M +S LG +G++ QQVQKYE G NRV AS L ++ L+ P+S FF+ P T Sbjct: 1 MQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEGLPDPETT 60 Query: 80 VCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKIIELVRSIVSSEKKYR 134 I +E + + +IST +G +L IDD +VR +++ LV SIV E + + Sbjct: 61 HGQQIITEIDEKIAYISTAEGRRL------IDDVLLLSPRVRSRVVALVSSIVDEEMEEQ 114 >gi|253700083|ref|YP_003021272.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774933|gb|ACT17514.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 114 Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 12/109 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G+SQEKL E +G++FQQ+QKYE G + +LQHI+ L+ ++ FF Sbjct: 10 IGTLIRRYRQDAGLSQEKLAEMVGVSFQQIQKYENGHTTLNIIKLQHIAAALKVAVTDFF 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D +P ++ EE+ QL + F ++ ++R I++LV Sbjct: 70 DAAPVKGVRLTGEED------------QLLQAFRKVKSGELRGCILKLV 106 >gi|330814062|ref|YP_004358301.1| transcriptional regulator, Cro/CI family [Candidatus Pelagibacter sp. IMCC9063] gi|327487157|gb|AEA81562.1| transcriptional regulator, Cro/CI family [Candidatus Pelagibacter sp. IMCC9063] Length = 120 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 54/84 (64%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++GK++RLRR LG++Q ++ + + +TFQQ+QKYEKG N V ++RL ++ L+ PI Sbjct: 5 LNQHLGKKLRLRRTSLGLTQTQVAQAINVTFQQIQKYEKGTNGVSSARLLQLANFLKVPI 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 FFF+ ++ +++ Sbjct: 65 KFFFEDYQDFSETTQNDGTQSLNY 88 >gi|167041371|gb|ABZ06124.1| putative helix-turn-helix motif protein [uncultured marine microorganism HF4000_005K23] Length = 121 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 50/78 (64%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + ++G ++R RR+ LG++Q K+ + + +TFQQ+QKYEKG N + + R+ ++ L+ P+ Sbjct: 6 NRHLGTKLRTRRLALGLTQTKVAQAINVTFQQIQKYEKGTNGISSLRIMQLANFLKVPVV 65 Query: 72 FFFDVSPTVCSDISSEEN 89 +F++ + + + E Sbjct: 66 YFYEDFSSYEGETFANEK 83 >gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 101 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 46/62 (74%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGKRI+ RR LGM+ KL E +GI+ QQ+ +YE+G+NR+ S L I+ +LE+PI++ Sbjct: 8 LLVGKRIQKRRKELGMTAVKLAEKIGISQQQLSRYERGINRINLSHLVQIASILETPINW 67 Query: 73 FF 74 FF Sbjct: 68 FF 69 >gi|262277238|ref|ZP_06055031.1| transcription regulator [alpha proteobacterium HIMB114] gi|262224341|gb|EEY74800.1| transcription regulator [alpha proteobacterium HIMB114] Length = 121 Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 70/116 (60%), Gaps = 12/116 (10%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++GK++RLRR LG++Q ++ + + +TFQQ+QKYEKG N V ++RL +S L+ PI Sbjct: 5 LNQHLGKKLRLRRTSLGLTQTQVAKAINVTFQQIQKYEKGTNGVSSARLLQLSSFLKVPI 64 Query: 71 SFFFDVSPTVCS---DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +FF+ S D SS ++ F L R F + + + ++K++E++ Sbjct: 65 KYFFEDYQDFASSNEDNSSSKDVNYSF--------LLRIFSDL-EPQQKEKLLEVL 111 >gi|156936184|ref|YP_001440100.1| hypothetical protein ESA_04083 [Cronobacter sakazakii ATCC BAA-894] gi|46093560|dbj|BAD14974.1| hypothetical protein [Escherichia coli] gi|156534438|gb|ABU79264.1| hypothetical protein ESA_04083 [Cronobacter sakazakii ATCC BAA-894] Length = 125 Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 7/119 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + D VG+RI++RR LG++ + L E + I+ QQ+ +YE+G N++ + L +I+ L Sbjct: 6 SDSADKQVGQRIQMRRKELGITAQHLAELVDISHQQLSRYERGTNKINVAHLVNIAIKLN 65 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV---KVRQKIIELV 123 +PIS+FF S + +E N DF+ D L F QI + R+ +I L+ Sbjct: 66 TPISWFF---IDCFSTLDNESKNQQDFVPVKDA-DLKNRFDQIWPRLTHEQRRVLIMLL 120 >gi|319409074|emb|CBI82722.1| Transcriptional regulator [Bartonella schoenbuchensis R1] Length = 94 Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 9/99 (9%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 +LGMSQ+ L LGI+FQQ+QKYEKG+NRVGA RL+ I+++ PISFF+ + T + Sbjct: 1 MLGMSQKTLAHHLGISFQQIQKYEKGLNRVGAGRLKDIADIFRVPISFFYPDTTTKEGAV 60 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + IS+ + + F + +K ++ I+EL+ Sbjct: 61 HHHD----EMISSKE----VKSFRVLTPIK-QKVILELI 90 >gi|253988215|ref|YP_003039571.1| hypothetical protein PAU_00734 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638791|emb|CAR67408.1| hypothetical protein PA-RVA13-1279 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779665|emb|CAQ82826.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 101 Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGKRI+ RR LGM+ KL +GI+ QQ+ +YE+G+NR+ S L I+ +L++PI++ Sbjct: 8 LLVGKRIQKRRKELGMTAVKLAGQIGISQQQLSRYERGINRIDLSHLVQIASILDTPINW 67 Query: 73 FF 74 FF Sbjct: 68 FF 69 >gi|23168698|gb|AAN08677.1| transcriptional regulator [Anaplasma marginale str. Florida] Length = 148 Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 16/125 (12%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-----DVSPT 79 + GMS+ + LGITFQQVQKYEKG NR+ SRL ++ VL I D+ P Sbjct: 1 MKGMSRNQPASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLIAKLQNDLRPI 60 Query: 80 VCSDISS-------EENNVMDFIST----PDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + ++ EE+++ +F + + L L R + +I K+R I LV+ + + Sbjct: 61 TDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLVRAYRRIKSDKMRGAIHTLVKVMCA 120 Query: 129 SEKKY 133 +++ Sbjct: 121 EQQQD 125 >gi|254805385|ref|YP_003083606.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254668927|emb|CBA07148.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254670077|emb|CBA04959.1| transcriptional regulator [Neisseria meningitidis alpha153] gi|254672200|emb|CBA05097.1| transcriptional regulator [Neisseria meningitidis alpha275] Length = 126 Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G++IR RR LG S EKL E + ++ QQ+ +YE+GV ++ S L I+ LE+PI+ Sbjct: 19 DRLIGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETPIA 78 Query: 72 FFF-DVSPTVCSDISSEENNVMDFIST 97 +FF D P + + EN + Sbjct: 79 WFFQDCLPKPLTVACTPENTPEQQWHS 105 >gi|58699199|ref|ZP_00374010.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534286|gb|EAL58474.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 119 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E LG+ + + +YEKG R+ RL I+E L Sbjct: 8 SLDYKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSIS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ +S + D + L L R + +I+D ++R+ L + S Sbjct: 68 ITDLIPISKSCLEDEGE------------EILNLVREYKKINDQELRKMFCLLTNFVPVS 115 Query: 130 EK 131 EK Sbjct: 116 EK 117 >gi|227822741|ref|YP_002826713.1| putative transcriptional regulator, XRE familiy [Sinorhizobium fredii NGR234] gi|227341742|gb|ACP25960.1| putative transcriptional regulator, XRE familiy [Sinorhizobium fredii NGR234] Length = 122 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 35/79 (44%), Positives = 50/79 (63%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 PN +D VG RIRLRR LGM +E LG LG+ QV++YE+G RV A++L +++V Sbjct: 3 SQPNSIDAFVGHRIRLRRKALGMDEENLGAALGVPVAQVRRYEQGTRRVCAAQLLAMADV 62 Query: 66 LESPISFFFDVSPTVCSDI 84 L+ +FFF+ SP + Sbjct: 63 LQVHFTFFFEESPASGGGL 81 >gi|261392144|emb|CAX49650.1| putative HTH-type transcriptional regulator [Neisseria meningitidis 8013] Length = 117 Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G++IR RR LG S EKL E + ++ QQ+ +YE+GV ++ S L I+ LE+PI+ Sbjct: 10 DRLIGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETPIA 69 Query: 72 FFF-DVSPTVCSDISSEENNVMDFIST 97 +FF D P + + EN + Sbjct: 70 WFFQDCLPKPLTVACTPENTPEQQWHS 96 >gi|197284169|ref|YP_002150041.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227357957|ref|ZP_03842299.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194681656|emb|CAR40714.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227161692|gb|EEI46724.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 106 Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 54/102 (52%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV ++ V+ VGKRI+ RR LG + +L LG++ QQ +YE+G+N++ + L Sbjct: 1 MVKYRRANIDVNALVGKRIQKRRKELGYTGSQLAAKLGVSQQQFSRYERGLNKIDLTYLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +++ L +PI +FF+ T S S + + + L Sbjct: 61 LLAKFLNTPIYWFFEDCITSTSVKSGKPLSRRSNLLAKKALD 102 >gi|258543105|ref|YP_003188538.1| XRE family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634183|dbj|BAI00159.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01] gi|256637243|dbj|BAI03212.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-03] gi|256640295|dbj|BAI06257.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-07] gi|256643352|dbj|BAI09307.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-22] gi|256646407|dbj|BAI12355.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-26] gi|256649460|dbj|BAI15401.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-32] gi|256652446|dbj|BAI18380.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655504|dbj|BAI21431.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-12] Length = 138 Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K+I N D +G RIR RR L MS E+LG +G T+QQ+QKYE G N + A+ L Sbjct: 64 APKRIRN--DKRLGFRIRQRRHELHMSLEQLGHAIGCTYQQMQKYETGKNAIKATLLPTF 121 Query: 63 SEVLESPISFFFDVSPT 79 + L+ P+++FF+ Sbjct: 122 ATALDVPLTWFFEGLEA 138 >gi|42520475|ref|NP_966390.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410214|gb|AAS14324.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 302 Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E LG+ + + +YEKG R+ RL I+E L Sbjct: 8 SLDYKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSIS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ +S + D + L L R + +I+D ++R+ L + S Sbjct: 68 ITDLIPISKSCLEDEGE------------EILNLVREYKKINDQELRKMFCLLTNFVQVS 115 Query: 130 EKK 132 EK Sbjct: 116 EKS 118 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ +Q+ L E + T ++ YE+G V +L ++E L I Sbjct: 163 QIGKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSINI--- 219 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII-ELVRSIVSSEKK 132 +D+ +E + + + L + + +I+ ++R +I L I E+K Sbjct: 220 --------TDLLIKEGSKV----KNELPDLIKEYKEIESQELRHALIKSLFEGIRICEEK 267 Query: 133 YRTIEE 138 R IE Sbjct: 268 VREIER 273 >gi|133711095|gb|ABO36239.1| hypothetical translational regulator [Ehrlichia ewingii] Length = 118 Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 17/117 (14%) Query: 30 QEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEEN 89 Q +L LGITFQQVQKYEKG NR+ SRL ++ VL + +IS + + Sbjct: 1 QNQLANKLGITFQQVQKYEKGTNRIVISRLYQLASVLNVEVRDIMLKLQEDLKNISCDND 60 Query: 90 NVM-----------------DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 V + I + + L + R + I + KVR I LV+++ Sbjct: 61 VVSIPHLKDNEDKFIPELHDNKIDSKEVLMMVRAYTCIKNEKVRNIIYNLVKALSVD 117 >gi|58696656|ref|ZP_00372210.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58699194|ref|ZP_00374006.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630362|ref|YP_002727153.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630756|ref|YP_002727547.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|58534290|gb|EAL58477.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58537180|gb|EAL60282.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|225592343|gb|ACN95362.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592737|gb|ACN95756.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 302 Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E LG+ + + +YEKG R+ RL I+E L Sbjct: 8 SLDYKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSIS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ +S + D + L L R + +I+D ++R+ L + S Sbjct: 68 ITDLIPISKSCLEDEGE------------EILNLVREYKKINDQELRKMFCLLTNFVQVS 115 Query: 130 EKK 132 EK Sbjct: 116 EKS 118 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ +Q+ L E + T ++ YE+G V +L ++E L I Sbjct: 163 QIGKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSINI--- 219 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII-ELVRSIVSSEKK 132 +D+ EE + + + L + + +I+ ++R +I L I E+K Sbjct: 220 --------TDLLIEEGSKV----KNELPDLIKEYKEIESQELRHALIKSLFEGIRICEEK 267 Query: 133 YRTIEE 138 R IE Sbjct: 268 VREIER 273 >gi|42520148|ref|NP_966063.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409885|gb|AAS13997.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 308 Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 10/129 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E +G+ + + +YEKG + RL I+E L Sbjct: 8 SLDCKVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRGISIKRLYAIAEALSVS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ S + E + L L R + +I+D ++R+ L + + S Sbjct: 68 ITNLIPASKEKIGFKNEEG----------EILNLVREYKKINDHELRRMFCLLTKFVQVS 117 Query: 130 EKKYRTIEE 138 EK R E+ Sbjct: 118 EKSSRKSEK 126 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 14/125 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R++ +Q+ LGE + T +V YE+G V +L ++E L I+ Sbjct: 166 IGKKIKEWRLVREYTQKDLGEKMSTTRHEVSNYEQGRTAVPLDKLYEMAEALSINITDLL 225 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII-ELVRSIVSSEKKY 133 I +E + ++ + L + + +I+ ++R +I L I E+K Sbjct: 226 ---------IEKDEGSRVE----NELPNLIKEYKEIESQELRNALIKSLFEGIRICEEKV 272 Query: 134 RTIEE 138 R IE Sbjct: 273 REIER 277 >gi|268589692|ref|ZP_06123913.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291315003|gb|EFE55456.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 103 Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 4/95 (4%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G +I+ RR LG+S L + L ++ QQ+ +YE G+N++ + L I+E L Sbjct: 1 MDIHTIIGIKIKNRRKELGLSGANLADKLNLSQQQISRYENGINKIPINHLVDIAEALNC 60 Query: 69 PISFFFDVSPTVCSDISSEENNVM--DFISTPDGL 101 PI +FF + +E +N + + I T + + Sbjct: 61 PIEWFFQGYVSNSKSNKNEPSNELNQELIYTAESV 95 >gi|300721858|ref|YP_003711136.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] gi|106635962|gb|ABF82228.1| NilR [Xenorhabdus nematophila] gi|297628353|emb|CBJ88916.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] Length = 101 Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ VG+RI+ +R L ++ L + +GI+ QQ+ +YE+G NR+ L I+++LE+PI Sbjct: 5 NLLVGQRIQTKRKELSITATALAKQIGISQQQLSRYERGTNRINLDHLVVIADILETPID 64 Query: 72 FFF-DVSPTVCSDISSEENNVMDFISTPDGL 101 +FF D + + D S+ +I + + Sbjct: 65 WFFLDCNKSKKKDGSTVNKITDQYIPIAETI 95 >gi|222087278|ref|YP_002545813.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724726|gb|ACM27882.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 64/125 (51%), Gaps = 5/125 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + + +D +VG+++R+ RM +SQ +LG+ +G+ QQ++++E NR+ + L ++ Sbjct: 29 DTQSTHLIDRHVGQQLRIIRMHSNLSQTELGQLVGLRHQQIEQFESSKNRMNTAVLCEVA 88 Query: 64 EVLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L PI+ F+ P E + + T + + + +++ ++R + Sbjct: 89 NCLNVPIARVFEALPLTELASSDGSLPEIGECIADLPTSESCRYVKEILRLP-PQLRTRA 147 Query: 120 IELVR 124 + L++ Sbjct: 148 LALIK 152 >gi|209966969|ref|YP_002299884.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] gi|209960435|gb|ACJ01072.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] Length = 191 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 8/129 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +G+R+R RR +LGM+Q++LG +G+TFQQVQKYE+G NRV L ++ L++ Sbjct: 21 VSAALGERVRARRGLLGMTQQELGRRVGLTFQQVQKYERGSNRVAVPTLIKLANALDTTP 80 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + + + + D + L L +I VR ++ L +++ Sbjct: 81 ADLLEG-------LGATQVGSRDAALDRESLNLLSASRRIP-AGVRHAMVGLAKALAEGR 132 Query: 131 KKYRTIEEE 139 ++ Sbjct: 133 SVDAAFLDQ 141 >gi|227357946|ref|ZP_03842289.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|6453635|emb|CAB61440.1| mrpJ [Proteus mirabilis HI4320] gi|227161855|gb|EEI46884.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 107 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 4/104 (3%) Query: 1 MVGNKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ N N V+ +VGK+I+ +R LG + +L + +G++ QQ +YE+G+N++ L Sbjct: 1 MMMNFDFANIDVNASVGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHL 60 Query: 60 QHISEVLESPISFFFDV---SPTVCSDISSEENNVMDFISTPDG 100 ++ L +PI +FF+ ++ ++ N + +TPD Sbjct: 61 VLLALYLNTPIYWFFEDCYVKKPSLNNKGIDKRNYVIAQATPDA 104 >gi|261343818|ref|ZP_05971463.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282568202|gb|EFB73737.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 103 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G RI+ RR LG+S L L ++ QQ+ +YE G+N++ L I+++L Sbjct: 1 MDIHSIIGTRIKNRRKELGLSGANLASKLNLSQQQISRYENGINKIPIDHLLDIADILMC 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 PI +FF +D ++ + Sbjct: 61 PIEWFFKGYKNEDNDNEQVPFDITN 85 >gi|48527206|gb|AAT45743.1| putative Cro/CI family trancriptional regulator [Rhizobium etli] Length = 76 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 38/65 (58%), Positives = 46/65 (70%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R I +SQ LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRAIRRVSQLDLGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPIS 71 IS Sbjct: 61 GVEIS 65 >gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] Length = 127 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD +GKRI+ RR LG++ L E +GI QQ+ +YE+G N++ S L I+ L++ Sbjct: 8 DVDRFIGKRIQQRRKELGLTASALSEQIGIAQQQLSRYERGDNKINVSHLVEIATALDTS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I +FF S + R FI + + +VR+++ + + + Sbjct: 68 IGWFFIDCLAEDSKTTH-----------------TRKFIPVGEDEVRERLTYHMDQLSAD 110 Query: 130 EKKYRTI 136 E++ + Sbjct: 111 ERRGLLV 117 >gi|290473639|ref|YP_003466511.1| transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] gi|289172944|emb|CBJ79715.1| Transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] Length = 100 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 49/87 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI +R LG++ L + +GI+ QQ+ +YE+G NR+ + L IS+ L +PIS+FF Sbjct: 8 VGKRICTKRKELGITATALAKQIGISQQQLSRYERGTNRININHLVVISKQLGTPISWFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + + S+ +I + + Sbjct: 68 EECFKDEKEDSTVNKLTDQYIPIAETV 94 >gi|213019728|ref|ZP_03335533.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994769|gb|EEB55412.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 300 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 12/126 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG R+ RL I+E L Sbjct: 1 MEKSLDCEVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I+ +S + D + L L R + +I+D ++R+ L + Sbjct: 61 SISITDLIPISKSCLEDEGE------------EILNLVREYKKINDQELRKMFCLLTNFV 108 Query: 127 VSSEKK 132 SEK Sbjct: 109 QISEKS 114 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 14/126 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ +Q+ L E + T ++ YE+G V +L ++E L I+ Sbjct: 159 QIGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDL 218 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII-ELVRSIVSSEKK 132 + S+ EN + D L + + +I+ ++R +I L + E+K Sbjct: 219 L----IEKDEGSTVENELPD---------LIKEYKEIESQELRNALIKSLFEGMHICEEK 265 Query: 133 YRTIEE 138 R E Sbjct: 266 VRKAER 271 >gi|163869149|ref|YP_001610389.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018836|emb|CAK02394.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 128 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L PISFF+ T Sbjct: 1 MSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPISFFYADIITKQQPPHHH 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + IS+ + L + F + + Sbjct: 61 D----EVISSTEEYLLLKRFRTLTSIN 83 >gi|190570721|ref|YP_001975079.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356993|emb|CAQ54382.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 304 Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E +G+ + + +YEKG R+ RL I+E L Sbjct: 8 SLDCEVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEALSIS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ +S + D + L L R + +I+D ++R+ L + S Sbjct: 68 ITDLIPISKSCLEDEGE------------EILNLVREYKKINDQELRKMFCLLTNFVQIS 115 Query: 130 EKK 132 EK Sbjct: 116 EKS 118 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 14/126 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ +Q+ L E + T ++ YE+G V +L ++E L I+ Sbjct: 163 QIGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDL 222 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII-ELVRSIVSSEKK 132 + S+ EN + D L + + +I+ ++R +I L + E+K Sbjct: 223 L----IEKDEGSTVENELPD---------LIKEYKEIESQELRNALIKSLFEGMHICEEK 269 Query: 133 YRTIEE 138 R E Sbjct: 270 VRKAER 275 >gi|212711887|ref|ZP_03320015.1| hypothetical protein PROVALCAL_02962 [Providencia alcalifaciens DSM 30120] gi|212685409|gb|EEB44937.1| hypothetical protein PROVALCAL_02962 [Providencia alcalifaciens DSM 30120] Length = 103 Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G RI+ RR LG+S L + L ++ QQ+ +YE GVN++ L ISE+L Sbjct: 1 MDIHSVIGLRIKNRRKELGLSGANLADRLHLSQQQISRYENGVNKIPIDHLLDISEILMC 60 Query: 69 PISFFFDV 76 PI +FF+ Sbjct: 61 PIEWFFNG 68 >gi|99035917|ref|ZP_01314965.1| hypothetical protein Wendoof_01000195 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 306 Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 10/114 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG++++ R+ G +Q+ L E +G+ + + +YEKG R+ RL I+ L I Sbjct: 9 LDYEVGEKVKSWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAIAGALSVSI 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + S + E + L L R + +I+D ++R+ L + Sbjct: 69 TDLITASKEKIGFKNEEG----------EILNLVREYKKINDQELRRMFCLLTK 112 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 14/126 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK+I+ R++ +Q+ L E + T ++ YE+G +L I+E L I Sbjct: 165 QVGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRVATPLGKLYEIAEALSISI--- 221 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII-ELVRSIVSSEKK 132 +D+ +EE+ + L + + +I+ ++R +I L I E+K Sbjct: 222 --------TDLLTEEDEGSRV--ENELPDLIKEYKEIESQELRHALIKSLFEGIRICEEK 271 Query: 133 YRTIEE 138 R IE Sbjct: 272 VREIER 277 >gi|197284179|ref|YP_002150051.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194681666|emb|CAR40739.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 106 Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ +VGK+I+ +R LG + +L + +G++ QQ +YE+G+N++ L ++ L +P Sbjct: 10 DVNASVGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLVLLALYLNTP 69 Query: 70 ISFFFDV---SPTVCSDISSEENNVMDFISTPDG 100 I +FF+ ++ ++ N + +TPD Sbjct: 70 IYWFFEDCYVKKPSLNNKGIDKRNYVIAQATPDA 103 >gi|150378060|ref|YP_001314655.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032607|gb|ABR64722.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 148 Score = 91.0 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 42/67 (62%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD VG IR R I G+SQ+KLG+ +G+TFQQ+QKY+ G +R+ ASRL + L Sbjct: 9 DVDATVGTNIRRFREISGISQKKLGDAIGVTFQQIQKYDSGKDRISASRLVETARALGCD 68 Query: 70 ISFFFDV 76 ++ F Sbjct: 69 LNSLFAG 75 >gi|148262670|ref|YP_001229376.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396170|gb|ABQ24803.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 113 Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 13/108 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R G +QE+L E +G++ QQ+QKYE G N++ RLQ +++ L PI Sbjct: 8 REIGHRLRQLRQQAGWTQERLAEQIGVSTQQIQKYECGTNKMNTDRLQQVAQALSIPIQS 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 F + ++ + L L + I + ++++ I+ Sbjct: 68 LFTDTNDSLP------------LAVAEKL-LIDSYRAIPNKEIQESIL 102 >gi|302337126|ref|YP_003802332.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634311|gb|ADK79738.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 132 Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R G+SQ LGE +G+++QQ+QKYE G + + A +L I+E+L PI FF Sbjct: 8 IGRNIRSYRKACGLSQASLGEKVGVSYQQIQKYENGASSISAFQLGRIAEILAVPIDCFF 67 Query: 75 --DVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D + + +F+ + D +L + +I +++ + + +I E+ Sbjct: 68 HLDTESGAEAPPAYSSEIGDEFLRVSQDERKLLLRYREIKTPLIKKYLQNHMNAIRELER 127 Query: 132 K 132 Sbjct: 128 N 128 >gi|226328868|ref|ZP_03804386.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] gi|225202054|gb|EEG84408.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] Length = 112 Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 43/66 (65%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ VGKRI+ +R LG + ++ + +G++ QQ +YE+G+N++ S L ++ L +PI Sbjct: 17 VNALVGKRIQKKRKELGYTGMQIAKKIGVSQQQFSRYERGMNKIDLSYLVLLANYLNTPI 76 Query: 71 SFFFDV 76 +FF+ Sbjct: 77 YWFFED 82 >gi|220925738|ref|YP_002501040.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950345|gb|ACL60737.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 149 Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+++G+RI R +S+E L + LGI+ Q KYEKG+NR+ A+ L Sbjct: 1 MAG--KPADARDVHIGQRIERLRKQAKLSREALAQRLGISDSQFGKYEKGLNRMSAADLD 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 + + + PI +FF+ P + + Sbjct: 59 FVGRLFDVPIGYFFEGLPRGEAAGPGLAERPQAVL 93 >gi|206889709|ref|YP_002248181.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741647|gb|ACI20704.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 107 Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 10/115 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R G SQ +L E +GIT+QQ+QKYEKG +++ RL I+ L+ P+S Sbjct: 1 MKIGEIIKRLRKAKGFSQMELAEKIGITYQQLQKYEKGKSKITVDRLIDIARALDVPLS- 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + S+I +EN I + + + YF +I D ++R+ +++ + Sbjct: 60 ------AILSEIYKKENIE---IYSEEEIVFLEYFRKISDPELRKSFLKIFEQLS 105 >gi|154247535|ref|YP_001418493.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161620|gb|ABS68836.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 130 Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 5/104 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +D+ +G R++ R+ G+SQE LGE LGITFQQ+QKYE G NR+ S L Sbjct: 1 MPTLKDKTKELDVVIGFRVKQSRLRSGVSQEALGEHLGITFQQIQKYENGKNRIACSTLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 I++ L+ F + + + ++ + + L Sbjct: 61 MIADFLKVSALFLLRGTEKDAGALPQARDT-----ASVEAVDLL 99 >gi|183599041|ref|ZP_02960534.1| hypothetical protein PROSTU_02486 [Providencia stuartii ATCC 25827] gi|188021257|gb|EDU59297.1| hypothetical protein PROSTU_02486 [Providencia stuartii ATCC 25827] Length = 104 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G +I+ RR LG+S L + L I+ QQV +YE G+N++ + L I+ L+ Sbjct: 1 MDIHYFIGIKIKTRRKELGLSGADLAKKLNISQQQVSRYENGINKIPLNHLVSIAIALKC 60 Query: 69 PISFFFDVSPTVCSDISSEEN 89 PI +FF T +E Sbjct: 61 PIDWFFQGCITEEDYSMQDET 81 >gi|307317593|ref|ZP_07597032.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306896751|gb|EFN27498.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 89 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K +D +G R+R R++ GMSQ L E LGITFQQ+QKYEKG NR+ AS L I + Sbjct: 6 KAQTTHIDQKIGARVREFRLLRGMSQGALAEKLGITFQQMQKYEKGANRISASALILICK 65 Query: 65 VLESPISF----FFDVSPTVC 81 L + FFD Sbjct: 66 ELGITPNHILGAFFDNDEDTE 86 >gi|296491936|ref|YP_003662403.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] gi|289176823|emb|CBJ92992.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] Length = 291 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 10/132 (7%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V N+G RI++ R + ++ LG +G++ QQ+ + E G NR+ L +I+ L PI Sbjct: 104 VTKNIGLRIQIWRKTMMLTAAALGLSVGLSQQQISRNEHGKNRIHIDHLVNIALALGIPI 163 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIE-----LV 123 S+FF D P + + SS I L++ I ++VR+K + L Sbjct: 164 SWFFIDCHPDLEVNTSSHLPTTPTKIMDKPELEMMA--KNIGQRIRVRRKKLNVTLQGLA 221 Query: 124 RSIVSSEKKYRT 135 + ++ + Sbjct: 222 KQ-AGMNQQTLS 232 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 41/73 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G+RIR+RR L ++ + L + G+ Q + +YE G R+ ++ L I+ L +PI + Sbjct: 200 KNIGQRIRVRRKKLNVTLQGLAKQAGMNQQTLSRYETGKKRITSTDLVIIAIALNTPIDW 259 Query: 73 FFDVSPTVCSDIS 85 FF ++ D Sbjct: 260 FFIDYSSLDDDFP 272 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+R+ +RR G+S L + GI+ Q+ YE G++ + S L IS L +P + Sbjct: 11 KSIGQRVCIRRKEAGLSTHTLAQHTGISEAQLIMYETGLDDIPLSHLIQISAGLNTPTGW 70 Query: 73 FF 74 FF Sbjct: 71 FF 72 >gi|300724595|ref|YP_003713920.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] gi|22094605|gb|AAM91936.1|AF525420_7 putative repressor of flagellae [Xenorhabdus nematophila] gi|297631137|emb|CBJ91828.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] Length = 91 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 41/66 (62%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + VGKRI+++R G++ +L + +G++ QQ+ +YE+G N++ L IS L +P Sbjct: 3 VSMLVGKRIQIKRKETGVTAAELADKIGVSHQQLSRYERGTNKISLEHLVAISIALNTPA 62 Query: 71 SFFFDV 76 +F + Sbjct: 63 DWFLED 68 >gi|49476087|ref|YP_034128.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238895|emb|CAF28188.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 108 Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A RL+ I++ +++ Sbjct: 15 DIFVGKKIRFRRKMLKMSQKTLADHLRVSSQQIQKYETGLNRVSAGRLKEIADRVKT--- 71 Query: 72 FFFDVSPTVCS 82 FFD S Sbjct: 72 -FFDDLSGGFS 81 >gi|255600423|ref|XP_002537454.1| conserved hypothetical protein [Ricinus communis] gi|223516285|gb|EEF24927.1| conserved hypothetical protein [Ricinus communis] Length = 89 Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 3/87 (3%) Query: 44 VQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD---FISTPDG 100 +QKYE+G NR+ AS+L I+ L++P+S FF+ D ++ + + F STP+G Sbjct: 1 IQKYERGDNRISASKLYAIAVFLKTPVSVFFEGLAKPGEDGATVDGSAQAAQMFASTPEG 60 Query: 101 LQLNRYFIQIDDVKVRQKIIELVRSIV 127 ++L QI +R+ I+E++R++ Sbjct: 61 IELAGLLPQIGSQALRRHIVEIIRALA 87 >gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 126 Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR RR L +SQE+L L +++QQ+Q+YE G N++ +Q +++ L P+ +FF Sbjct: 12 IGAAIRRRRHELSLSQEELAARLEVSYQQIQRYESGKNKLNVENIQLVADALSVPVGYFF 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V S+ E P +L F I D +++ +I L R + + K+ R Sbjct: 72 QVVHQETVIESTIEQPC------PKEQELLAQFRSIRDDQMKTLVINLSR-LAAQGKEAR 124 >gi|261345516|ref|ZP_05973160.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566568|gb|EFB72103.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 106 Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G +I+ RR LG+S L + L I+ QQ+ +YE G+N++ + L I+ L+ Sbjct: 1 MDIHYFIGIKIKARRKELGLSGAGLAKILNISQQQISRYENGINKIPLNHLVSIAVALKC 60 Query: 69 PISFFFDV 76 PI +FF Sbjct: 61 PIDWFFQG 68 >gi|163869010|ref|YP_001610241.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018688|emb|CAK02246.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 112 Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 40/102 (39%), Positives = 68/102 (66%), Gaps = 12/102 (11%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 +L +SQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I+++L+ I FF+ +DI Sbjct: 1 MLKISQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIADILDISI-FFY-------ADI 52 Query: 85 SSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S++E+ ++ + S + L + F ++ K ++ I+ L+ Sbjct: 53 STKEHVLLPYEEMTSNQEEHTLLKSFRELK-PKQQKAILCLI 93 >gi|239947476|ref|ZP_04699229.1| helix-turn-helix domain protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921752|gb|EER21776.1| helix-turn-helix domain protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 158 Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 41/159 (25%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N I +P D +R++ RR+ +G+SQ++LG+ L I+ QV+KYE+G SRL + Sbjct: 2 NDSIKHP-DKLASERLKERRLAVGISQKELGQALDISALQVKKYEEG-----LSRLYVFA 55 Query: 64 EVLESPISFFF-------------------------DVSPTVCSDISSEENNVMDFIS-- 96 +VL + + +FF ++ ++I+ EE + IS Sbjct: 56 KVLNTSLKYFFNSSEEEKLKTDDENTSNNKIEYLFKEIESDFLNNIAEEEGQYENDISFD 115 Query: 97 --------TPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L L R F ++ + +R+ IIELVRS+ Sbjct: 116 YKELSRTMERELLSLTRAFTRVQNPNIRKIIIELVRSVS 154 >gi|329891045|ref|ZP_08269388.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846346|gb|EGF95910.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 90 Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 62/90 (68%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +D+++G+R+R RR +LG++Q++LG+ +GI FQQ+QKYE G NR+ A+RL ++E L Sbjct: 1 MPAEIDLHLGRRLRRRRRLLGLTQQQLGDRVGIRFQQIQKYECGANRISAARLWELAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFIS 96 ++P+S+F+D + + + + + Sbjct: 61 QTPVSYFYDGAGESPDNSQPRPDAPLAAAA 90 >gi|152979702|ref|YP_001345331.1| XRE family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150841425|gb|ABR75396.1| transcriptional regulator, XRE family [Actinobacillus succinogenes 130Z] Length = 114 Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 43/65 (66%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+RI+ +R +G S EKL E + ++ QQ+ +YE+G +++ + L I+ L++PIS Sbjct: 10 DKLIGQRIQQKRKEMGFSAEKLAEYIDLSQQQLSRYERGASKINVAHLIDIAIFLKTPIS 69 Query: 72 FFFDV 76 +FF Sbjct: 70 WFFQD 74 >gi|163868978|ref|YP_001610208.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018655|emb|CAK02213.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 52 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 36/49 (73%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+SQ+ LG LG++FQQ+QKYEKG NR+ A I++ L+ PISFF Sbjct: 1 MGLSQKALGNFLGVSFQQIQKYEKGANRISAKCFLEIAQKLQVPISFFM 49 >gi|58699659|ref|ZP_00374339.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533824|gb|EAL58143.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 226 Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 10/124 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL I Sbjct: 19 IAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDLI 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 VS + EE + L L R + I+D ++R+ L + EK + Sbjct: 79 PVSSEKICLKNEEE----------EILNLVRKYKTINDQELRKVFYLLTKFTRVGEKSSK 128 Query: 135 TIEE 138 E+ Sbjct: 129 KAEK 132 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK+I+ R++ +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 171 QIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSIS 226 >gi|148284913|ref|YP_001249003.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] gi|189183368|ref|YP_001937153.1| hypothetical protein OTT_0461 [Orientia tsutsugamushi str. Ikeda] gi|146740352|emb|CAM80780.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] gi|189180139|dbj|BAG39919.1| hypothetical protein OTT_0461 [Orientia tsutsugamushi str. Ikeda] Length = 79 Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 44/78 (56%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + +G RI + R+ +S+ L +G+T QQ+ KYEKG+NR+ RL Sbjct: 1 MAKHHEYIDRANRFIGNRIYMVRLEQKLSRNNLAASIGVTHQQLHKYEKGINRISIGRLM 60 Query: 61 HISEVLESPISFFFDVSP 78 I++ L + FF+D + Sbjct: 61 LIAKALNKNVDFFYDGAD 78 >gi|307315880|ref|ZP_07595384.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306898470|gb|EFN29153.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 123 Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 7/120 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G IR R I G+SQ KLG +G+TFQQVQK E G +R+ + +L + L ++ Sbjct: 11 DAALGTNIRRFREISGISQNKLGAAIGVTFQQVQKDESGKDRISSKKLVETARTLGCYLN 70 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + ++ +++ L+L +I + R I LV + + E+ Sbjct: 71 SLYAGIGIGDATLAFPDHSTA-------ALKLAANLDRIASSEQRAAIALLVAGLATQEE 123 >gi|240140055|ref|YP_002964532.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|254562480|ref|YP_003069575.1| transcriptional regulator [Methylobacterium extorquens DM4] gi|240010029|gb|ACS41255.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|254269758|emb|CAX25730.1| putative transcriptional regulator [Methylobacterium extorquens DM4] Length = 140 Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 17/139 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ +G+RI +R ++Q + + G++ Q+QKYEKGVNR+ A L Sbjct: 6 MAGQK--TDERDVLLGRRIAEQRKRSKLTQRAVADSFGMSAAQLQKYEKGVNRISAIHLA 63 Query: 61 HISEVLESPISFFFDVSPTVCSDIS------SEENNVMDFISTPDGLQLNRYFIQ----I 110 +S + +P+S F D P + + ++ S L R F + Sbjct: 64 ILSRLTNTPVSDFLDGIPHPDPETERGFSDNGQHAYAVEPWS-----DLARAFARQFTET 118 Query: 111 DDVKVRQKIIELVRSIVSS 129 + R+++ V + Sbjct: 119 FTEQQRRELSAAVEILSQE 137 >gi|307133110|ref|YP_003885126.1| putative transcriptional regulator [Dickeya dadantii 3937] gi|306530639|gb|ADN00570.1| Putative transcriptional regulator [Dickeya dadantii 3937] Length = 106 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 26/126 (20%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQ 60 K PN D+ +R++ R+ G+SQ+KLG G + ++ +YEKGV+ Q Sbjct: 2 KSRPNYHDVF-CQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIDTAQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ L+ P++FF+ + + +L F+++ K R +I+ Sbjct: 61 QLADALDVPLAFFY--------------------TADDELAELMLAFLRLSPEK-RAEIL 99 Query: 121 ELVRSI 126 LV+++ Sbjct: 100 TLVKTV 105 >gi|163852720|ref|YP_001640763.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|218531560|ref|YP_002422376.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|163664325|gb|ABY31692.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|218523863|gb|ACK84448.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 135 Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 17/139 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ +G+RI +R ++Q + + G++ Q+QKYEKGVNR+ A L Sbjct: 1 MAGQK--TDERDVLLGRRIAEQRKRSKLTQRAVADSFGMSAAQLQKYEKGVNRISAIHLA 58 Query: 61 HISEVLESPISFFFDVSPTVCSDIS------SEENNVMDFISTPDGLQLNRYFIQ----I 110 +S + +P+S F D P + + ++ S L R F + Sbjct: 59 ILSRLTNTPVSDFLDGIPHPDPETERGFSDNGQHAYAVEPWS-----DLARAFARQFTET 113 Query: 111 DDVKVRQKIIELVRSIVSS 129 + R+++ V + Sbjct: 114 FTEQQRRELSAAVEILSQE 132 >gi|170743390|ref|YP_001772045.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197664|gb|ACA19611.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 149 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 17/136 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D ++G+RI R+ + ++ + LGI+ Q KYEKG NR+ A+ L Sbjct: 1 MAG--KPADARDAHIGQRIEQLRLKAKIPRDVVAGRLGISASQFGKYEKGANRMSAADLD 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ----------I 110 + + + PI +FF+ P ++ + F + Sbjct: 59 AVGRLFDVPIGYFFEGMPRDEGTGPGLRERPQPPLAGAESWT---GFAGAVARAADAHLL 115 Query: 111 DDVKVRQKIIELVRSI 126 D R+++ +VR++ Sbjct: 116 TDD--RRRLAAVVRAL 129 >gi|114797386|ref|YP_760560.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114737560|gb|ABI75685.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 127 Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 43/86 (50%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P VD VG++IR R+ + +LG+ LGI+ QQ+QKYE G NR+ A L Sbjct: 8 AAGSRSPTKVDQQVGEKIRELRIAQNFTLSELGQELGISHQQLQKYETGTNRLSAGMLSS 67 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE 87 ++ L PI+ F S + Sbjct: 68 VARALRVPIAELFQTSDATSQEARDP 93 >gi|268592295|ref|ZP_06126516.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312076|gb|EFE52529.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 94 Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Query: 7 IPNP--VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +PN + +G +I R + GM+ E L +G++ QQ +YE+G+NR+ RL H S+ Sbjct: 1 MPNYYLISKIIGNKITYYRKMKGMTLENLSNIVGVSEQQQSRYERGINRINIDRLYHYSK 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMD 93 + E I FF + ++I E ++ Sbjct: 61 IFEIDIMAFFIFNSREINEIEHAEEKYLN 89 >gi|213019847|ref|ZP_03335649.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994595|gb|EEB55241.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 310 Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 10/129 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+E L Sbjct: 12 SIRYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVS 71 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ VS + EE + L L R + +I ++R+ L + Sbjct: 72 IADLIPVSNEKIYLENKEE----------EILNLIREYKKISGQELRKVFCLLTKFARVG 121 Query: 130 EKKYRTIEE 138 E+ + E Sbjct: 122 EENSKKTER 130 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 15/113 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 169 QIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDL 228 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +++ + +E N L + +I+ ++R L++ + Sbjct: 229 LELTEDADDKVENELPN------------LIEEYKEIESQELR---YALIKFL 266 >gi|58699142|ref|ZP_00373967.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534342|gb|EAL58516.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 312 Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 10/124 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL I Sbjct: 19 IAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDLI 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 VS + EE + L L R + I+D ++R+ L + EK + Sbjct: 79 PVSSEKICLKNEEE----------EILNLVRKYKTINDQELRKVFYLLTKFTRVGEKSSK 128 Query: 135 TIEE 138 E+ Sbjct: 129 KAEK 132 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 18/113 (15%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 171 QIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSISI--- 227 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +D+ EE+ +++ + L + + +I+ ++R L++S+ Sbjct: 228 --------TDLLIEEDEIVE----SELPDLIKEYKKIESQELR---YALIKSL 265 >gi|329889881|ref|ZP_08268224.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845182|gb|EGF94746.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 133 Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+R+R RR LG+SQ LG +G++ QQ+QKYE G N V ASRL +S L + Sbjct: 11 NRAIGERVRRRRKELGLSQTALGAKIGVSCQQIQKYENGRNSVAASRLHQLSLALATTAP 70 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + E +L + + + + + R+ ++ V ++ S Sbjct: 71 ALIGLKSWDEGEDGGERA------------RLLQAWSVLPNHQ-REPLLRYVEALALSAD 117 Query: 132 KYRT 135 + T Sbjct: 118 PHVT 121 >gi|212710089|ref|ZP_03318217.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] gi|212687296|gb|EEB46824.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] Length = 94 Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG RI+ R G++ ++ L ++ QQ +YE+G+NR+ L I++ + Sbjct: 11 PIAKIVGSRIKKLRKEYGLTGTEIAAYLNVSQQQFSRYERGINRIDIDSLVMIADFFKIS 70 Query: 70 ISFFFDVSPTV 80 I +FF+ TV Sbjct: 71 IHYFFEDISTV 81 >gi|58697513|ref|ZP_00372774.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58536024|gb|EAL59708.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 247 Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 10/124 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL I Sbjct: 10 IAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDLI 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 VS + EE + L L R + I+D ++R+ L + EK + Sbjct: 70 PVSSEKICLKNEEE----------EILNLVRKYKTINDQELRKVFYLLTKFTRVGEKSSK 119 Query: 135 TIEE 138 E+ Sbjct: 120 KAEK 123 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 15/101 (14%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 162 QIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSISI--- 218 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +D+ EE+ +++ + L + + +I+ + Sbjct: 219 --------TDLLIEEDEIVE----SELPDLIKEYKKIESQE 247 >gi|226330186|ref|ZP_03805704.1| hypothetical protein PROPEN_04099 [Proteus penneri ATCC 35198] gi|225200981|gb|EEG83335.1| hypothetical protein PROPEN_04099 [Proteus penneri ATCC 35198] Length = 94 Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 44/83 (53%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K I ++ +G RI +R G + ++ LGI+ QQ +YE+G N++ +L IS Sbjct: 3 DKNIKLSINEVIGNRISKKRREQGWTGNQVASLLGISQQQFSRYERGRNQISVYQLMKIS 62 Query: 64 EVLESPISFFFDVSPTVCSDISS 86 +L + I++FFD + S Sbjct: 63 RILNTSINWFFDDYEKIDSSTGE 85 >gi|85704294|ref|ZP_01035397.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217] gi|85671614|gb|EAQ26472.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217] Length = 136 Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 7/137 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 N +D+ VG+ +R R+ G + L G+T QQ+QKYE G NRV SRL +S Sbjct: 3 SKQNDIDVIVGRVLRRTRLASGHTMTSLAAQCGVTHQQLQKYESGSNRVSVSRLFILSNA 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNV----MDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P + D + S+ + + F ++ + D +V Q ++ Sbjct: 63 LGIPPAELIDQVQELLGRDRSDPVDSAWHRLQFAKPEHCRKIISGLASVRDTEVLQSVLN 122 Query: 122 LVRSIVSSEKKYRTIEE 138 L + ++ +E Sbjct: 123 L---LAVLDQNEGRVER 136 >gi|42520477|ref|NP_966392.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630365|ref|YP_002727156.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630759|ref|YP_002727550.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|42410216|gb|AAS14326.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592346|gb|ACN95365.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592740|gb|ACN95759.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 303 Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 10/124 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL I Sbjct: 10 IAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGIIDLI 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 VS + EE + L L R + I+D ++R+ L + EK + Sbjct: 70 PVSSEKICLKNEEE----------EILNLVRKYKTINDQELRKVFYLLTKFTRVGEKSSK 119 Query: 135 TIEE 138 E+ Sbjct: 120 KAEK 123 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 18/113 (15%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 162 QIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSISI--- 218 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +D+ EE+ +++ + L + + +I+ ++R L++S+ Sbjct: 219 --------TDLLIEEDEIVE----SELPDLIKEYKKIESQELR---YALIKSL 256 >gi|316933837|ref|YP_004108819.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601551|gb|ADU44086.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 152 Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 2/98 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + R+R+ R+ G+SQEK E LG++FQQVQKYE G NR+ +L ++ + P Sbjct: 26 YIDSRIAARLRVARIEAGLSQEKTAEALGLSFQQVQKYESGKNRISPGKLAVLAALYGKP 85 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 I+ F+ ++ + V + + G ++ F Sbjct: 86 IASFY--HELEQPPATTSRDLVERVLESRTGRRMVLGF 121 >gi|213019778|ref|ZP_03335581.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994608|gb|EEB55253.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 306 Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 11/133 (8%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N +D VG+++R R+ G +Q+ L + +G T+Q + +YEKG R+ ++L Sbjct: 1 MKKENNYSNFLDYKVVGQKVRSCRIAKGYTQKDLAKKIGTTYQVILQYEKGTRRISITKL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++E L + ++S+EE + + L L R +I D ++R+ Sbjct: 61 YELAEALSTTARDL-----ACVQEVSNEERYEGE-----EVLNLVRRHKEIKDQELRETF 110 Query: 120 IELVRSIVSSEKK 132 L + I SE++ Sbjct: 111 YLLTKFIRISEEE 123 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 16/112 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R+ G +QE L +GI Q++ +YE+G V L I++VL I+ Sbjct: 167 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEIAKVLLINIT--- 223 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D+ P + +SE + +L + +I ++R L++S+ Sbjct: 224 DLLPEARENENSEA----------ELSRLIEEYKKIKSQELR---HVLIKSL 262 >gi|170745337|ref|YP_001766794.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658938|gb|ACB27992.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 138 Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 52/97 (53%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D ++G+RIR R + +LG LG + QQ++KYE+G++R+ AS L I+ +L+ P Sbjct: 24 PLDRDIGERIRKHRQDRRLGYGQLGGMLGFSGQQMRKYERGLSRIPASTLYVIAHILDVP 83 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +++ + + I + +S + ++ Sbjct: 84 VNYLLPDEKRMLNPIQQRIQEITTKLSYIEDVRFLVA 120 >gi|307322435|ref|ZP_07601790.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306891921|gb|EFN22752.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 147 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD V IR R G+SQ+KLG+ +G+TFQQVQKYE G +R+ AS+L + L Sbjct: 9 DVDATV-ANIRRFRETSGISQKKLGDAIGVTFQQVQKYESGKDRISASKLVETARALGCD 67 Query: 70 ISFFFDV 76 ++ F Sbjct: 68 LNSLFAG 74 >gi|94266062|ref|ZP_01289781.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453384|gb|EAT03812.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 109 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 50/93 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+RIR RR +LG+SQ +L LGITFQ +Q++E+G L + +LE + Sbjct: 1 MNVGQRIRSRRQVLGLSQRELAARLGITFQAIQRWERGETFPRKETLPQLLAILEVGADW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 D+S+ +V++ + P Q+ R Sbjct: 61 LVGTPSLAGPDVSTIPPDVLEAVRDPRIQQIVR 93 >gi|192361971|ref|YP_001984171.1| MrfJ protein [Cellvibrio japonicus Ueda107] gi|190688136|gb|ACE85814.1| MrfJ protein [Cellvibrio japonicus Ueda107] Length = 131 Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D +G R++ R +S L + +G T QQ+ +YE G N++ A++L +++ L P Sbjct: 8 DLDRQIGLRLKKLRQQADISAVALADAIGSTQQQISRYENGQNKLSAAQLYLLAQSLCVP 67 Query: 70 ISFFF-DVSPT 79 IS+FF D P Sbjct: 68 ISWFFLDCDPD 78 >gi|170750881|ref|YP_001757141.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657403|gb|ACB26458.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 135 Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ VG+RI +R ++Q ++ + G++ Q+QKYEKG NR+ A L Sbjct: 1 MAGQK--TDQRDVYVGQRIAEQRRKASLTQRRVAQSFGMSAAQLQKYEKGTNRISAVHLD 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFIQ-IDDV---KV 115 S + P+ +FF P I+ + + GL+ L + I + + Sbjct: 59 IFSRMTGVPMDYFFKGMPRNDDFIAPGFSEREQSTLSEAGLKGLAEVVGRHITENFSEEA 118 Query: 116 RQKIIELVRSI 126 R+ + + +R++ Sbjct: 119 RRDVADAIRAL 129 >gi|268590899|ref|ZP_06125120.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313692|gb|EFE54145.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 102 Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 42/81 (51%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG RI+ R G++ ++ L ++ QQ +YE+G+NR+ L I++ L+ Sbjct: 6 PIAKIVGSRIKKLRREYGLTGTEVAMALNVSQQQFSRYERGINRIDIDSLVMIADFLKVS 65 Query: 70 ISFFFDVSPTVCSDISSEENN 90 + +F + S+ + E N Sbjct: 66 VHYFLEDIDLEQSNSWTSEYN 86 >gi|167855531|ref|ZP_02478293.1| transcriptional regulator, XRE family protein [Haemophilus parasuis 29755] gi|219871292|ref|YP_002475667.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167853332|gb|EDS24584.1| transcriptional regulator, XRE family protein [Haemophilus parasuis 29755] gi|219691496|gb|ACL32719.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 113 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+RI+ +R G S EKL EC+ ++ QQ+ +YE+G +++ + L I+ ++PI+ Sbjct: 10 DKLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKTPIN 69 Query: 72 FFF-DVSPTVCSDISSEENNV 91 +FF D P ++ +E + Sbjct: 70 WFFQDCIPAEFTEKELKEIEI 90 >gi|240949478|ref|ZP_04753818.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240296051|gb|EER46712.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 113 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+RI+ +R G S EKL EC+ ++ QQ+ +YE+G +++ + L I+ ++PI+ Sbjct: 10 DKLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKTPIN 69 Query: 72 FFF-DVSPTVCSDISSEENNV 91 +FF D P ++ +E + Sbjct: 70 WFFQDCIPANFTEKELKEIEI 90 >gi|154497138|ref|ZP_02035834.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] gi|150273537|gb|EDN00665.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] Length = 417 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 40/81 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RI L+R LG+SQE LG+ LG++ Q + K+E + +L +S + P+ + Sbjct: 1 MTVGQRIALKRKELGLSQEGLGDKLGVSRQAIYKWESDASLPEVEKLVALSRIFSVPVGW 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 ++ + + Sbjct: 61 LLGEEEHPSGQTDTQPAELTE 81 >gi|290476510|ref|YP_003469415.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] gi|289175848|emb|CBJ82651.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] Length = 92 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 42/66 (63%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + VGKRI+++R +GM+ +L + + ++ QQ+ +YE+G N++ L +S L++P Sbjct: 3 VSMLVGKRIQIKRKEIGMTVAELADRISVSQQQLSRYERGTNKISLEHLVDVSIALKTPA 62 Query: 71 SFFFDV 76 +F + Sbjct: 63 DWFLED 68 >gi|268592288|ref|ZP_06126509.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291312067|gb|EFE52520.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 92 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 39/75 (52%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G +I+ R G+S L + +GI+ QQ +YE+G NR+ RL+ S + Sbjct: 6 PVSAVIGNKIKSLRKNKGLSLTALAKTVGISEQQQLRYERGNNRISIDRLKQYSNYFDIN 65 Query: 70 ISFFFDVSPTVCSDI 84 I +FF S + I Sbjct: 66 IIYFFSFSEDEKTKI 80 >gi|183598411|ref|ZP_02959904.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] gi|188020590|gb|EDU58630.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] Length = 76 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M GN P +I VGK+I+ R + ++ E+LG +G++ QQ+ +YE GVN + L Sbjct: 1 MSGNIIKPTF-NIIVGKKIKRYRKEMNLTAEELGRYIGVSQQQISRYESGVNHINIDFLS 59 Query: 61 HISEVLESPISFF 73 +SE+ + PI F Sbjct: 60 QLSELFKVPIQVF 72 >gi|114762814|ref|ZP_01442246.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114544424|gb|EAU47431.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 130 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++RL R G++Q +L + +G QQ+ +YE G R+ A++L IS+ L+ P+ FF Sbjct: 7 AQLRLYRRSAGLTQNELAKRIGAHVQQIYRYETGAGRIPAAQLWLISQALDMPLDQFF-- 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +S +E V D + T L ++ + R +IEL+R++ Sbjct: 65 -IDADMPVSEQEQAVFDDVRTAATL------LRPLAPEQRNAVIELLRTMAQ 109 >gi|327191928|gb|EGE58913.1| hypothetical protein RHECNPAF_258003 [Rhizobium etli CNPAF512] Length = 114 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 9/108 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R+ G +Q LG+ +G+ +QQ+QKYE+G NR+ SR + +L ++ FD Sbjct: 1 MRTARLQAGYTQTALGDAVGVAYQQIQKYERGANRISLSRASQFASILRISVATLFDDPD 60 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 V S S + ++ +L + + + K +I+E+ I Sbjct: 61 AVVSQASPPHAPLAQWM------EL---YARACNTKSLSEIVEVAEEI 99 >gi|227356569|ref|ZP_03840956.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227163325|gb|EEI48252.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 113 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 44/87 (50%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P VGK+I R + G++ +L + +GI+ QQ +YE+G+NRV RL + Sbjct: 18 NRSYPASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACF 77 Query: 66 LESPISFFFDVSPTVCSDISSEENNVM 92 +S F + +I ++ +N++ Sbjct: 78 FGISLSDLFQLDDEEKVEIENKISNMV 104 >gi|226328632|ref|ZP_03804150.1| hypothetical protein PROPEN_02527 [Proteus penneri ATCC 35198] gi|225203365|gb|EEG85719.1| hypothetical protein PROPEN_02527 [Proteus penneri ATCC 35198] Length = 73 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G++I R + G+S ++L +G++ QQ +YE+GVNR+ RL +E+ Sbjct: 6 PVSKAIGRKITYYRKMKGISLDELAALIGVSQQQQSRYERGVNRINLDRLNQYAEIFNIH 65 Query: 70 ISFFF 74 I FF Sbjct: 66 IKDFF 70 >gi|99035914|ref|ZP_01314962.1| hypothetical protein Wendoof_01000192 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 306 Score = 81.0 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+E L I Sbjct: 10 IAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVSIVDLI 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 VS + EE + L L R + +I ++R+ L + E+ + Sbjct: 70 PVSNEKIYLENKEE----------EILNLIREYKKISGQELRKVFCLLTKFARVGEENSK 119 Query: 135 TIEE 138 E Sbjct: 120 KTER 123 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 15/112 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 163 IGKKIKEWRIVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLL 222 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +++ + +E N L + +I+ ++R L++S+ Sbjct: 223 ELTEDADDKVENELPN------------LIEEYKEIESQELR---YVLIKSL 259 >gi|190570724|ref|YP_001975082.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019732|ref|ZP_03335537.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356996|emb|CAQ54385.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994773|gb|EEB55416.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 306 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 11/133 (8%) Query: 1 MVGNKKIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K N +D V G+ +R RR+ G +Q+ L + + T+Q + +YEKG R+ +L Sbjct: 1 MKKENKCSNFLDYKVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++E L + +S+E+ + + L L R +I D ++R+ Sbjct: 61 YELAEALSTTARDL-----ACVQGVSNEKRYEEE-----EVLNLVRRHKEIKDQELRETF 110 Query: 120 IELVRSIVSSEKK 132 L + I SE++ Sbjct: 111 YLLTKFIRISEEE 123 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 13/106 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R+ G +QE L +GI Q++ +YE+G + V L I++VL I+ Sbjct: 167 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRSAVSLEMLDEIAKVLLINIT--- 223 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 D+ P + +SE + +L + + +I ++R +I Sbjct: 224 DLLPETRENENSEV----------ELSRLIKEYKKIKSQELRNVLI 259 >gi|150378104|ref|YP_001314699.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032651|gb|ABR64766.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 139 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G I R I G+SQ++LG+ +G+TFQQV+KYE G +R+ + +L + + ++ Sbjct: 11 DAALGTNICRFREISGISQKELGDAIGVTFQQVRKYESGKDRISSKKLVETARTIGCDLN 70 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + I ++ + + L+L F I + R I L+ Sbjct: 71 SLY-------AGIGIDDATLAFLDHSRAALKLAANFDGIASSEERAAIALLL 115 >gi|329848452|ref|ZP_08263480.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843515|gb|EGF93084.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 127 Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 40/68 (58%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R L MSQ+ L + +G+TFQQVQKYE+G NRV AS+L I++ L + Sbjct: 2 GLNIRRIRRDLNMSQQVLADRIGLTFQQVQKYERGANRVSASKLVAIAKALGVSPASLLP 61 Query: 76 VSPTVCSD 83 S ++ Sbjct: 62 DSQAAAAE 69 >gi|197286055|ref|YP_002151927.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194683542|emb|CAR44394.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 97 Score = 80.2 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 44/87 (50%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P VGK+I R + G++ +L + +GI+ QQ +YE+G+NRV RL + Sbjct: 2 NRSYPASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACF 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVM 92 +S F + +I ++ +N++ Sbjct: 62 FGISLSDLFQLDDEDKVEIENKISNII 88 >gi|329889919|ref|ZP_08268262.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845220|gb|EGF94784.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 143 Score = 80.2 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 13/127 (10%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RIR RR LG SQ LG +G++FQQ+QKYEKG+N + A RL ++ L + + Sbjct: 11 NRAIGRRIRDRRKALGFSQAALGSKVGLSFQQIQKYEKGLNGLAAVRLGQLALALATTV- 69 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + E++ D L + + ++ + R+ ++ V ++ S Sbjct: 70 -------PRLLGLGEEDHPASDEQRHR----LLQAWERLTQAQ-REPLLRYVEALALSPS 117 Query: 132 KYRTIEE 138 T E Sbjct: 118 SATTAVE 124 >gi|213019781|ref|ZP_03335584.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994611|gb|EEB55256.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 302 Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG ++ +L I+E L Sbjct: 1 MEKSLDCEVGQKVKSWRLERGYTQKDLAEKVGVKYWAILQYEKGSRKIPIKKLYAIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFI------STPDGLQLNRYFIQIDDVKVRQKI- 119 + E+ +++ + + L FI++ + + R+ + Sbjct: 61 SVNVKGLVCGETLPNEKRYFEDEEILNLVKGYKDEELSEVFYLLTKFIRLSEERSRKAVK 120 Query: 120 IELVRSI 126 IE+ R + Sbjct: 121 IEVARGL 127 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+RI+ R+I G +Q+ L +GIT Q + +YE+G V L I++VL Sbjct: 154 PIPYKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRAAVSLEMLHEIAKVLSIS 213 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I S N L + +I+ ++R +I Sbjct: 214 IIDLLPESDEDSEAEEKLSN-------------LIEEYKKIESRELRDMLI 251 >gi|284006480|emb|CBA71741.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 96 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 46/94 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + IN+GK I+ +R G+S E L + +G++ Q + +YE+GVN + + L I++ L P Sbjct: 2 SISINIGKMIKFKRKEKGLSGELLAKKIGVSQQPLSRYERGVNDIKVNTLYSITQALNIP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 I FF S +F + + L Sbjct: 62 IDSFFAELIENESKKKQSNAQSDEFSLLAESIIL 95 >gi|321272295|gb|ADW80180.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 306 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG ++ +L I+E L Sbjct: 5 MEKSLDYEVGQKVKNWRLERGYTQKDLAEKVGVKYWAILQYEKGNRKIPIKKLYAIAEAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFI------STPDGLQLNRYFIQIDDVKVRQKI- 119 + E+ +++ + + L FI++ + + R+ + Sbjct: 65 SVNVKGLVCGETLPNEKRYFEDEEILNLVKGYKDKELSEVFYLLTKFIRLSEERSRKAVK 124 Query: 120 IELVRSI 126 +E+ R + Sbjct: 125 MEVARGL 131 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 13/111 (11%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG+RI+ R+I G +Q+ L +GIT Q + +YE+G + V L I++VL Sbjct: 158 PVPYKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSIS 217 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I D+ P D +EE L + +I+ ++R +I Sbjct: 218 I---IDLLPESDEDSEAEEKLSK----------LIEEYKKIESRELRNVLI 255 >gi|197286562|ref|YP_002152434.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227357636|ref|ZP_03841989.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194684049|emb|CAR45374.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227162346|gb|EEI47350.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 105 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + K ++ +G+RIR R L S + + LGI+ QQ+ +YE+G NR+ + Sbjct: 1 MIDSSKT---INFRIGQRIRHLRKNLKYSGKLFAKELGISQQQLSRYERGTNRISIEFVY 57 Query: 61 HISEVLESPISFF 73 I+E + IS+F Sbjct: 58 LITEKFDVHISYF 70 >gi|188582745|ref|YP_001926190.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346243|gb|ACB81655.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ +G+RI +R ++Q + + G++ Q+QKYEKGVNR+ A L Sbjct: 1 MAGQK--TDERDVLLGRRIAEQRKRSKLTQRAVADSFGMSAAQLQKYEKGVNRISAIHLA 58 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + +PIS F D P + S +++ ++ S + R F++ Sbjct: 59 ILGRLTNTPISEFLDGIPHPDPETERGFSESGQQSYAVEPWSDL-ARAIARQFVETFSED 117 Query: 115 VRQKIIELVRSIVSS 129 R+++ + + Sbjct: 118 QRRELSAAIEVLSRE 132 >gi|167755401|ref|ZP_02427528.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|237733631|ref|ZP_04564112.1| SOS-response transcriptional repressor [Mollicutes bacterium D7] gi|167704340|gb|EDS18919.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|229383229|gb|EEO33320.1| SOS-response transcriptional repressor [Coprobacillus sp. D7] Length = 206 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 18/104 (17%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G+RI+ R G++QE+LG LG+ + KYE V + +Q +SE+ + P S+F Sbjct: 3 GERIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKDTIQKLSEIFDVPASYFL 62 Query: 75 DVSPTVCSDISSE-----------------ENNVMDFISTPDGL 101 + + I+ ++NV ++IS P+ L Sbjct: 63 GIDESNQPIITDSITIPLYSDISCGTGLFVDDNVDEYISLPETL 106 >gi|268591032|ref|ZP_06125253.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313838|gb|EFE54291.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 88 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K I N V N+GK+I+L R +S L +GI+ QQ+ +YE G++ + S++ IS Sbjct: 16 KNITNIVAKNIGKKIKLLRSEYRLSGSDLARIIGISQQQLSRYENGLSDISTSKIMLISV 75 Query: 65 VLESPISFFF 74 + + +FF Sbjct: 76 YFKVDVCYFF 85 >gi|291326970|ref|ZP_06126519.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312079|gb|EFE52532.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 95 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +VG +IR R GMS + L LGI+ Q +YE G + + ++++ Sbjct: 1 MKRKISKSVGLKIRSLRESHGMSGKDLSILLGISQQHQSRYENGEVNIHVDTIYQLAQIF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 ++FF + T + N F + + L Sbjct: 61 NVSPTYFFTETITDINSTELSVNKKNYF--SAEAL 93 >gi|295084668|emb|CBK66191.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 138 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 10/133 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE--SPI 70 +VG+ ++ R+ LGM QE L LG++ Q++ K EK + + L I+EVL + + Sbjct: 12 RHVGRNLQRIRVYLGMKQEALASDLGVSQQEISKIEKQ-DEIEDGLLTKIAEVLGISTDV 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FDV +C+ NN D +P + + + +K++EL ++ SE Sbjct: 71 IKDFDVEKAICN-----INNYKDATISPGAIATV--YAHNQQINPLEKVVELYERLLKSE 123 Query: 131 KKYRTIEEECMVE 143 ++ I EC+ + Sbjct: 124 QEKIEILRECIKQ 136 >gi|222055067|ref|YP_002537429.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564356|gb|ACM20328.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 115 Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 16/106 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R G+SQEKL E +G++ Q+QKYE G +++ +LQ +++ L + FF Sbjct: 13 LGNQLRER---AGISQEKLAEHVGVSKGQIQKYEYGKDKMNTDKLQRVADALSVSVQEFF 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 V ++ + L L + I + ++++ I+ Sbjct: 70 ATGEDVLP------------LAVSEKL-LLDAYRSIPNKEIKESIL 102 >gi|319945880|ref|ZP_08020130.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747945|gb|EFW00189.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] Length = 228 Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 43/73 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LGIT+Q +E+GV + +++ + ++L+ PI +F ++ Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKKPSKEKVKLLEQILDVPIGYFTEL 64 Query: 77 SPTVCSDISSEEN 89 + S+E Sbjct: 65 EIVRLYNTLSDEG 77 >gi|22023151|gb|AAM88940.1|AF313446_1 putative transcriptional regulator [Rhizobium etli] Length = 94 Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 5/78 (6%) Query: 59 LQHISEVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 LQ I+EVL + SFFF+ + + + + V +F+ T +GL LNR F++I D Sbjct: 1 LQRIAEVLHTSPSFFFEQNESQPLSLQGLALPDGADPVAEFLRTKEGLVLNRAFLKIADP 60 Query: 114 KVRQKIIELVRSIVSSEK 131 +R+ II LV+++ +E Sbjct: 61 DIRETIIALVKAMAQAES 78 >gi|114798188|ref|YP_761228.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114738362|gb|ABI76487.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 126 Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 40/84 (47%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + PN +D VG IR R ++ + L +G++ QQ+QKYE NR+ A L ++E Sbjct: 12 RSPNDLDRIVGSNIRALRQSQNITLQALATEIGVSHQQLQKYETSANRLSAGMLPIVAEA 71 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L +S + SD E Sbjct: 72 LGVEVSDLYFNEQCAKSDQHDEAA 95 >gi|254440856|ref|ZP_05054349.1| hypothetical protein OA307_271 [Octadecabacter antarcticus 307] gi|198250934|gb|EDY75249.1| hypothetical protein OA307_271 [Octadecabacter antarcticus 307] Length = 78 Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Query: 52 NRVGASRLQHISEVLESPISFFFDVSPT--VCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 NRV ASRL I+ L ++FFF+ + D+ D +S + L L R + Sbjct: 2 NRVSASRLWGIAHALGVEVAFFFEGLDGDLIGKDLGG---MPSDILSDKEALDLLRSYYA 58 Query: 110 IDDVKVRQKIIELVRSIVSS 129 I + + R+++ +L R + + Sbjct: 59 IPEHQ-RRRLFDLARVLSEA 77 >gi|148988905|ref|ZP_01820320.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] gi|147925716|gb|EDK76792.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] Length = 245 Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 16/125 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG++I+ R G +Q L E + + Q + KYEKG+ +V + ++++ I F Sbjct: 7 HVGEKIKFFRKENGWTQSVLAEKMSTSKQTISKYEKGIIKVNQDTIFKLADIFGVSIDSF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 F + S ++ + Q+ + + + L + ++ + + Sbjct: 67 FPSIIEEIATTSPIQS----------------IYDQLTPPRQEKALTYLKKQLLEQKNEN 110 Query: 134 RTIEE 138 E Sbjct: 111 IVSEN 115 >gi|261366338|ref|ZP_05979221.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571941|gb|EFB77476.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 399 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 12/106 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R G+SQE L E +G++ Q + K+EK LQ ++ L+ + Sbjct: 1 MTLGENIQAARKKKGLSQEALAEQVGVSRQALGKWEKDTALPSLDNLQALAAALDVSV-- 58 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 D + E ++ L R ++ D + R++ Sbjct: 59 --DGLLGTARPGGTPEPSL--------TLDTLRALLEARDAEKRRR 94 >gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] Length = 100 Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 39/67 (58%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ VGK IR RR LG+S +L +GI+ QQV +YE+G + L +++ LE+ + Sbjct: 4 VNQIVGKEIRKRRKELGLSGAELAGLVGISQQQVSRYERGECNITLDNLLSLAKALETDL 63 Query: 71 SFFFDVS 77 FF+ Sbjct: 64 ICFFNDE 70 >gi|321272298|gb|ADW80183.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] gi|321272350|gb|ADW80231.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 312 Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 11/133 (8%) Query: 1 MVGNKKIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K N +D V G+ +R RR+ G +Q+ L + + T+Q + +YEKG R+ +L Sbjct: 1 MKKENKCSNFLDYKVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++E L + ++S+EE + I L L R +I D ++R+ Sbjct: 61 YELAEALSTTARDL-----ACGQEVSNEERYEEEEI-----LNLVRRHKEIKDQELRETF 110 Query: 120 IELVRSIVSSEKK 132 L + I SE++ Sbjct: 111 YLLTKFIRISEEE 123 Score = 66.8 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 16/112 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R+ G +QE L +GI Q++ +YE+G V L I++VL I+ Sbjct: 170 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAGVSLEMLDEIAKVLSISIT--- 226 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D+ P + +SE + +L + +I ++R L++S+ Sbjct: 227 DLLPETTENENSEV----------ELSRLIEEYKKIKSQELR---HVLIKSL 265 >gi|240949581|ref|ZP_04753918.1| hypothetical protein AM305_11555 [Actinobacillus minor NM305] gi|240295989|gb|EER46659.1| hypothetical protein AM305_11555 [Actinobacillus minor NM305] Length = 356 Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++L R G+S LG +GI+ ++KYE VN +S L +S+VL PI FFF Sbjct: 2 IGNRLKLARNAAGLSMAALGNAVGISANMIKKYEHNVNMPTSSILLKLSQVLHIPIEFFF 61 Query: 75 DVSPTVCSDIS 85 +P I Sbjct: 62 RTTPPSLGAIE 72 >gi|169349664|ref|ZP_02866602.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] gi|169293739|gb|EDS75872.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] Length = 206 Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 19/112 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G+RI+ R G++QE+LG LG+ + KYE V + +Q +SE+ E P ++F Sbjct: 3 GQRIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKETIQKLSEIFEVPATYFL 62 Query: 75 DVSPTVCSDISSE-----------------ENNVMDFISTPDG-LQLNRYFI 108 + T I++ ++N+ ++I+ P+ L LN+ + Sbjct: 63 GIDETNQPTITNSITIPLYNDISCGTGIFVDDNIDEYIALPESLLTLNKEYF 114 >gi|237718063|ref|ZP_04548544.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|293370030|ref|ZP_06616597.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|299147754|ref|ZP_07040817.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|229452704|gb|EEO58495.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292634948|gb|EFF53470.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|298513937|gb|EFI37823.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 138 Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 10/133 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE--SPI 70 +VG+ ++ R+ LGM QE L LG++ Q++ K EK + + L I+EVL + + Sbjct: 12 RHVGRNLQRIRVYLGMKQEALASDLGVSQQEISKIEKQ-DEIEDGLLTKIAEVLGISTDV 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FDV +C+ NN D +P + + + +K++EL ++ SE Sbjct: 71 IKDFDVEKAICN-----INNYKDATISPGAIATV--YAHNQQINPIEKVVELYERLLKSE 123 Query: 131 KKYRTIEEECMVE 143 ++ I EC+ + Sbjct: 124 QEKIEILRECIKQ 136 >gi|170752102|ref|YP_001758362.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658624|gb|ACB27679.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 124 Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G VD+ +G RI R+ ++Q + +G+T Q+QKYEKG NR+ L Sbjct: 1 MAGQPAT--DVDVRIGGRISAARIRARLTQRTVAAEIGVTAAQLQKYEKGTNRISGVALS 58 Query: 61 HISEVLESPISFFFDVSPTVCS 82 I+++ +PI+ FFDV T Sbjct: 59 IIAKLTGAPIASFFDVPETPAP 80 >gi|42520374|ref|NP_966289.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410112|gb|AAS14223.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 312 Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 11/133 (8%) Query: 1 MVGNKKIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K N +D V G+ +R RR+ G +Q+ L + + T+Q + +YEKG R+ +L Sbjct: 1 MKKENKCSNFLDYKVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++E L + ++S+EE + I L L R +I D ++R+ Sbjct: 61 YELAEALSTTARDL-----ACGQEVSNEERYEEEEI-----LNLVRRHKEIKDQELRETF 110 Query: 120 IELVRSIVSSEKK 132 L + I SE++ Sbjct: 111 YLLTKFIRISEEE 123 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R+ G +QE L +GI Q++ +YE+G V L I++VL I+ Sbjct: 170 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEIAKVLLINIT--- 226 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII-ELVRSI 126 D+ P + +SE + +L + +I ++R +I L+ SI Sbjct: 227 DLLPETRENENSEA----------ELSRLIEEYKKIKSQELRDVLIKSLLESI 269 >gi|268592297|ref|ZP_06126518.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291312078|gb|EFE52531.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 73 Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +GK+I R G+S +L E +GI+ QQ +YE+GVNR+ RL + Sbjct: 1 MPYSTSHLIGKKILYYRKTNGLSVNELSEVIGISPQQQSRYERGVNRITLDRLFQYATYF 60 Query: 67 ESPISFFF 74 E I FF Sbjct: 61 EIDIKTFF 68 >gi|268590993|ref|ZP_06125214.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291313798|gb|EFE54251.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 90 Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 41/71 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI +R LG + +L + LG++ QQ+ +YE+G ++ L ++ ++ +PI +F Sbjct: 14 VGQRILEKRRELGYTGFQLAQLLGVSQQQISRYERGKIKIDLFHLFKLAFLMGTPIDWFL 73 Query: 75 DVSPTVCSDIS 85 + + S+ Sbjct: 74 EDISSQLSENG 84 >gi|251777920|ref|ZP_04820840.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082235|gb|EES48125.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 376 Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 42/68 (61%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R++ G+SQE+LG+ +G+T Q + EK + + L +SE L+ P+SFF+ Sbjct: 10 GQRIKQGRILRGLSQEQLGKKVGVTRQAISNCEKDNINLSTTNLLKLSETLDLPLSFFYR 69 Query: 76 VSPTVCSD 83 + SD Sbjct: 70 IPEEDNSD 77 >gi|160885067|ref|ZP_02066070.1| hypothetical protein BACOVA_03064 [Bacteroides ovatus ATCC 8483] gi|298483201|ref|ZP_07001381.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] gi|156109417|gb|EDO11162.1| hypothetical protein BACOVA_03064 [Bacteroides ovatus ATCC 8483] gi|298270718|gb|EFI12299.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] Length = 139 Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE--SPI 70 +VG+ ++ R+ LGM QE L LG++ Q++ K EK + + L I+EVL + + Sbjct: 12 RHVGRNLQRIRVYLGMKQEALASDLGVSQQEISKIEKQ-DEIEDGLLTKIAEVLGISTDV 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FDV +C+ NN D +P + +K++EL ++ SE Sbjct: 71 IKDFDVEKAICN-----INNYKDATISPGATATVYA-AHTQQINPLEKVVELYERLLKSE 124 Query: 131 KKYRTIEEECMVE 143 ++ I EC+ + Sbjct: 125 QEKIEILRECIKQ 137 >gi|307710044|ref|ZP_07646489.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619229|gb|EFN98360.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 260 Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 48/108 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +G++I+ R+ G +Q++LG +GI+ + YEKG + + ++ I Sbjct: 6 IAIVIGEKIKQYRLANGWTQQELGAKIGISKNAIGNYEKGFRSPKKNTMFDLANAFNVSI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 F +S + D + P ++ Y ++ D + +++ Sbjct: 66 DDLFPPIQKDTPPTTSPIQTIYDQLEPPGQRKVITYAEKLRDEQEKRR 113 >gi|315499434|ref|YP_004088237.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315417446|gb|ADU14086.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 276 Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 42/66 (63%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD +VG R+R+RR ++ MS++ L LGIT Q++K E+G R+G L +E L+ Sbjct: 9 NEVDTHVGLRLRVRRELVQMSEDWLAGHLGITSAQLRKIEEGRARIGNRELLLCAEALDV 68 Query: 69 PISFFF 74 P +F+ Sbjct: 69 PERYFY 74 >gi|226328955|ref|ZP_03804473.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] gi|225202141|gb|EEG84495.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] Length = 125 Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 42/76 (55%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +G +IR +R L +S + + E +GI+ QQ +YE G+ ++ L HI++ L+ Sbjct: 36 PISQIIGHKIRKQRQQLRLSAKVVAERVGISQQQFSRYENGLCKIDVDMLFHIAQELKVT 95 Query: 70 ISFFFDVSPTVCSDIS 85 +FF + S ++ Sbjct: 96 PAFFLPPNEEQVSAVA 111 >gi|268590938|ref|ZP_06125159.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313738|gb|EFE54191.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 78 Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ VG+ IR RR LG+S +L +G++ QQ+ +YE+G + L ++ L++ + Sbjct: 4 VNRIVGREIRKRRKHLGLSGIELANLVGVSQQQISRYERGECNINIENLHTLANALDTEM 63 Query: 71 SFFF 74 FF Sbjct: 64 ICFF 67 >gi|268591879|ref|ZP_06126100.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312853|gb|EFE53306.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 82 Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V N +I N +G+++R RR++LG S LG+ G++ QQ+ +YE+G RL Sbjct: 3 VYNTEISNS---FIGQQVRKRRLLLGWSASTLGKKSGLSQQQISRYERGTQNFTIYRLCI 59 Query: 62 ISEVLESPISFF 73 + +LE +++F Sbjct: 60 FANILECDLNYF 71 >gi|321272347|gb|ADW80228.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 306 Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + YE G ++ +L I+E L Sbjct: 5 MEKSLDYEVGQKVKNWRLERGYTQKDLAEKVGVKYWAILXYEXGNRKIPIKKLYAIAEAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFI------STPDGLQLNRYFIQIDDVKVRQKI- 119 + E+ +++ + + L FI++ + + R+ + Sbjct: 65 SVNVKGLVCGETLPNEKRYFEDEXILNLVKGYKDKELSEVFYLLTKFIRLSEERSRKAVK 124 Query: 120 IELVRSI 126 +E+ R + Sbjct: 125 MEVARGL 131 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 13/111 (11%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG+RI+ R+I G +Q+ L +GIT Q + +YE+G + V L I++VL Sbjct: 158 PVPYKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSIS 217 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I D+ P D +EE L + +I+ ++R +I Sbjct: 218 I---IDLLPESDEDSEAEEKLSK----------LIEEYKKIESRELRNVLI 255 >gi|294478947|gb|ADE87512.1| transcriptional regulator [Deep-sea thermophilic phage D6E] Length = 206 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 45/82 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I R + G+S E+LG +G+T + +++YE G R+ R+ I+E L+ + + Sbjct: 8 VGQNIEKYRKMKGLSAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIAEALDVDPADLY 67 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + + V +E+ ++ IS Sbjct: 68 EGTDVVEFTDETEKLPIVGAIS 89 >gi|89095957|ref|ZP_01168851.1| hypothetical protein B14911_04469 [Bacillus sp. NRRL B-14911] gi|89089703|gb|EAR68810.1| hypothetical protein B14911_04469 [Bacillus sp. NRRL B-14911] Length = 292 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R +LG+SQ++L E + T Q+ K EKG AS L IS+ L +++FF Sbjct: 6 IGQKIRDLRKLLGLSQKELAEGI-CTQAQISKIEKGDVYPYASTLYLISQKLGVDVNYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + T D E ++ + R I+ ++ Sbjct: 65 HIGTTPRLDYILEVERQLEITRRSFDYETMRSIIKGEENNP 105 >gi|295135558|ref|YP_003586234.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294983573|gb|ADF54038.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 140 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 13/132 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L LGI+ Q V EK N V L+ ISEVL Sbjct: 21 HIGRKISRIRELRGMKQEALAAELGISQQSVSNLEKSEN-VDEGTLKKISEVLNV----- 74 Query: 74 FDVSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 SP + E N+++ + N YF ID V+ KI+EL +V +EK+ Sbjct: 75 ---SPEAIRHFTEEAVFNIINNTFKDNSANNNNYFCTIDPVE---KIVELYERLVQAEKE 128 Query: 133 YRTIEEECMVEQ 144 E+ + ++ Sbjct: 129 KNAYLEKLLDKK 140 >gi|271502480|ref|YP_003335506.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270346035|gb|ACZ78800.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 106 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 26/125 (20%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQ 60 K N D+ +R++ R+ G+SQ+KLG G + ++ +YEKGV+ Q Sbjct: 2 KAKQNYHDVF-CQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIDTAQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +S+ L+ P++FF+ + +L F ++ K R +I+ Sbjct: 61 QLSDALDVPLAFFYTADDQLA--------------------ELMLAFWEMPPEK-RAEIL 99 Query: 121 ELVRS 125 L ++ Sbjct: 100 VLAKT 104 >gi|312868402|ref|ZP_07728602.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096147|gb|EFQ54391.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 228 Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 42/73 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LGIT+Q +E+GV + ++Q + ++L P +F ++ Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKQPSREKVQQLEQILNVPKGYFTEL 64 Query: 77 SPTVCSDISSEEN 89 +I S+E Sbjct: 65 EIARLYNILSDEA 77 >gi|213019906|ref|ZP_03335697.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994507|gb|EEB55164.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 314 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 10/115 (8%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG+ ++ +L I++VL Sbjct: 14 SIRYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVD 73 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 I D+ P I E+ R + +I+D ++R+ L + Sbjct: 74 I---IDLIPVSNEKICLEDEEEEILDL-------VREYKKINDQELRKMFCLLTK 118 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 13/126 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 171 QIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDL 230 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSEKK 132 +++ + +E N L + +I+ ++R +I+ L SI E+K Sbjct: 231 LELTEDADDKVENELPN------------LIEEYKEIESQELRYALIKFLFESIQICEEK 278 Query: 133 YRTIEE 138 + +E+ Sbjct: 279 VKRVEK 284 >gi|190570687|ref|YP_001975045.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356959|emb|CAQ54347.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 305 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 10/115 (8%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG+ ++ +L I++VL Sbjct: 5 SIRYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVD 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 I D+ P I E+ R + +I+D ++R+ L + Sbjct: 65 I---IDLIPVSNEKICLEDEEEEILDL-------VREYKKINDQELRKMFCLLTK 109 Score = 67.1 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 13/126 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 162 QIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDL 221 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSEKK 132 +++ + +E N L + +I+ ++R +I+ L SI E+K Sbjct: 222 LELTEDADDKVENELPN------------LIEEYKEIESQELRYALIKFLFESIQICEEK 269 Query: 133 YRTIEE 138 + +E+ Sbjct: 270 VKRVEK 275 >gi|308181771|ref|YP_003925899.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047262|gb|ADN99805.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 188 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 39/63 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ +R+ L ++Q ++ E L +T Q V ++E G + + +Q +SE+ + P ++FF Sbjct: 5 IGQRIKAKRLELKLTQNQVAEKLFVTQQTVARWENGKHTLPVKAVQDLSELFDVPTAYFF 64 Query: 75 DVS 77 Sbjct: 65 GED 67 >gi|261344499|ref|ZP_05972143.1| prophage Sa05, DNA-binding protein [Providencia rustigianii DSM 4541] gi|282567408|gb|EFB72943.1| prophage Sa05, DNA-binding protein [Providencia rustigianii DSM 4541] Length = 89 Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G +I+L R G+S + + +GI+ QQ +YE+G NR+ RL+ + Sbjct: 6 PVSAIIGNKIKLLRKEKGLSLIAVAKGVGISEQQQLRYERGNNRISIDRLKQYANYFNIS 65 Query: 70 ISFFFDVSPTVCSDI 84 ++ FF + I Sbjct: 66 LNQFFSFNENEKEKI 80 >gi|83951416|ref|ZP_00960148.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] gi|83836422|gb|EAP75719.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] Length = 219 Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+ IR R ++ L E G++ + + E+ NR + L IS L + Sbjct: 24 VDPGLGEEIRNLRKARRLTLGALAEATGLSTGFISQIERAQNRPSVTALFRISRALGVSV 83 Query: 71 SFFF---DVSPTVCSDISSEENNVMD 93 S+FF +V + D S + N D Sbjct: 84 SWFFPGPEVPDSGAPDPDSPDQNTAD 109 >gi|147677060|ref|YP_001211275.1| hypothetical protein PTH_0725 [Pelotomaculum thermopropionicum SI] gi|146273157|dbj|BAF58906.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 355 Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 36/60 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+RL R G+S +L +G++ Q + KYE+G++ + L ++E L + +FF Sbjct: 2 VGERLRLARRAAGLSLRELANRVGVSPQAISKYERGLDIPSSGVLLRLAEALGVNVEYFF 61 >gi|319650688|ref|ZP_08004827.1| hypothetical protein HMPREF1013_01432 [Bacillus sp. 2_A_57_CT2] gi|317397545|gb|EFV78244.1| hypothetical protein HMPREF1013_01432 [Bacillus sp. 2_A_57_CT2] Length = 294 Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R ++ +SQ +L + + T Q+ K EKG AS L ISE L +++FF Sbjct: 6 IGQRIRELRKLMNLSQGELAKGI-CTQAQISKIEKGDVYPYASTLYLISERLGVDVNYFF 64 Query: 75 DVSPTVCSDISSE 87 D+ T D E Sbjct: 65 DIGTTPRLDYVQE 77 >gi|226327970|ref|ZP_03803488.1| hypothetical protein PROPEN_01852 [Proteus penneri ATCC 35198] gi|225203674|gb|EEG86028.1| hypothetical protein PROPEN_01852 [Proteus penneri ATCC 35198] Length = 100 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + EVL Sbjct: 6 PVAYAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLEVLGVN 65 Query: 70 ISFFFD 75 I FF+ Sbjct: 66 IGSFFE 71 >gi|212697366|ref|ZP_03305494.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] gi|212675558|gb|EEB35165.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] Length = 199 Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ +R L ++QE L + L I+ Q V K+EKG++ L +SE+ I +F Sbjct: 34 IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKYF 92 >gi|325847281|ref|ZP_08169999.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480912|gb|EGC83961.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 167 Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ +R L ++QE L + L I+ Q V K+EKG++ L +SE+ I +F Sbjct: 2 IGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKYF 60 >gi|229135297|ref|ZP_04264092.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] gi|228648166|gb|EEL04206.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] Length = 242 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG++I+ R + M+Q++LG +G + YE G N L I+ L Sbjct: 15 MKQNISKYVGQQIKHYRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDALFAIANAL 74 Query: 67 ESPISFFF 74 + I+ F Sbjct: 75 DVSINDLF 82 >gi|317484279|ref|ZP_07943203.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924460|gb|EFV45622.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 272 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ RR +G+SQE L + G++ Q V K+E G + RL +S+VL + F Sbjct: 6 LNIGGKIQARRKAMGLSQEDLAQLTGVSRQSVTKWETGQSAPDLDRLVEVSDVLGVSLDF 65 Query: 73 FFDVSPTVCSDIS 85 V S S Sbjct: 66 LLREPQQVSSPPS 78 >gi|160943186|ref|ZP_02090422.1| hypothetical protein FAEPRAM212_00671 [Faecalibacterium prausnitzii M21/2] gi|158445425|gb|EDP22428.1| hypothetical protein FAEPRAM212_00671 [Faecalibacterium prausnitzii M21/2] Length = 392 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 38/67 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ L R I +S KL E +G+T Q V +YE G+ + A ++ IS+ L+ P FFF+ Sbjct: 11 GMRLTLAREIQNISSPKLAEKIGVTKQTVSQYENGLIKPSADKVLAISQELKFPPKFFFE 70 Query: 76 VSPTVCS 82 S S Sbjct: 71 GSSDNFS 77 >gi|197285673|ref|YP_002151545.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227356180|ref|ZP_03840569.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194683160|emb|CAR43778.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227163644|gb|EEI48560.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 100 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 40/81 (49%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + +V Sbjct: 2 SNKYPVAYAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLDV 61 Query: 66 LESPISFFFDVSPTVCSDISS 86 L I FF+ D+ Sbjct: 62 LGINIGNFFEDVMGGMVDVPE 82 >gi|212711619|ref|ZP_03319747.1| hypothetical protein PROVALCAL_02694 [Providencia alcalifaciens DSM 30120] gi|212685721|gb|EEB45249.1| hypothetical protein PROVALCAL_02694 [Providencia alcalifaciens DSM 30120] Length = 91 Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 36/69 (52%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PV +G +IR R G+S + + +GI+ QQ +YE+G NR+ RL+ + Sbjct: 2 KNSYPVSAVIGYKIRELRKEKGLSLLAVAKTIGISEQQQLRYERGHNRISIDRLKQYAIY 61 Query: 66 LESPISFFF 74 I+ FF Sbjct: 62 FNININDFF 70 >gi|227507921|ref|ZP_03937970.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192635|gb|EEI72702.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 187 Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 37/63 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R+ ++Q +L E L +T Q V ++E ++ + +Q ++++ + +S+FF Sbjct: 7 IGKRIKKIRIKNQLTQNQLAEKLFVTQQTVARWENDKHQPPITAVQDLAKLFDVDVSYFF 66 Query: 75 DVS 77 Sbjct: 67 GED 69 >gi|190570881|ref|YP_001975239.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190571713|ref|YP_001976071.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019313|ref|ZP_03335120.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|213019394|ref|ZP_03335200.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357153|emb|CAQ54565.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357985|emb|CAQ55448.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994816|gb|EEB55458.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995422|gb|EEB56063.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 325 Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 11/132 (8%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K+ + N G+ I+ R+I G +QE+L + L + Q+ YE+G ++ + RL I+ Sbjct: 163 DKESIHYTSQNGGQEIKKWRIIRGYTQEELAKKLNVGPSQIHHYEQGSVKILSERLWEIA 222 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 E L D+ E++ D + L L R +I++ + R ++ V Sbjct: 223 EKLSV-----------NAEDLIREKDCYEDDEGEKELLSLARELKKINNQESRDELDIWV 271 Query: 124 RSIVSSEKKYRT 135 + ++ Y+ Sbjct: 272 EFLSQRKQVYKE 283 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 12/129 (9%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K +P + + +R R+ + + L + GI + + +YE+G + +L+ I+ Sbjct: 11 NTKNISPARYKIAQNVRSWRLKQKYALKDLVDKTGIKYHTLLRYEQGACGIPIEKLKVIA 70 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 E L + F + +E+ + +++ + I + R+ I L Sbjct: 71 EGLSIHVRNLFPRRKALRESGCFDESKI-EWM-----------YNFIAKTRGRKAIYALT 118 Query: 124 RSIVSSEKK 132 +SI + E+ Sbjct: 119 KSIGAEEEN 127 >gi|212709228|ref|ZP_03317356.1| hypothetical protein PROVALCAL_00263 [Providencia alcalifaciens DSM 30120] gi|212688140|gb|EEB47668.1| hypothetical protein PROVALCAL_00263 [Providencia alcalifaciens DSM 30120] Length = 83 Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 41/67 (61%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + ++G ++R RR++LG S LG+ G++ QQ+ +YE+G SRL + VL+ Sbjct: 7 HISNTDIGAKVRKRRLLLGWSASILGKKTGLSQQQISRYERGTQNFTISRLCIFANVLQC 66 Query: 69 PISFFFD 75 +++F + Sbjct: 67 DLNYFLE 73 >gi|322388880|ref|ZP_08062472.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140263|gb|EFX35776.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 228 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 27/128 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+GV +++ + E+L+ P +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGVKEPSKEKVKQLEEILKVPKGYFTQ- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK-KYRT 135 +++ R + + + K ++K++ R++ E+ K T Sbjct: 64 ------------------------IEIVRLYNSLSN-KGKEKVVVYARNLAQEEQAKKVT 98 Query: 136 IEEECMVE 143 E + E Sbjct: 99 AISEKLYE 106 >gi|148243675|ref|YP_001219915.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|148243717|ref|YP_001219957.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146400238|gb|ABQ28773.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|146400280|gb|ABQ28815.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] Length = 185 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 59/140 (42%), Gaps = 13/140 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D ++G +I RR +G+S+ +L L + + + YE+G+ V + L +++ L Sbjct: 18 SLDAHIGGQITARRAEIGLSRRQLAMTLRVPVRGIAAYERGIQHVAPADLFRLAQALGVD 77 Query: 70 ISFFFDVS-------------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 +++F+ S P +D D Q+ F +I + +R Sbjct: 78 LAYFYTDSASSPQAPKAETGCPVGGRAAGGVGQAAVDMRQYDDIDQIADRFSRIRNPAIR 137 Query: 117 QKIIELVRSIVSSEKKYRTI 136 + + ++ S+ E T+ Sbjct: 138 RCVTRMLDSLAEHEVSSVTV 157 >gi|253690483|ref|YP_003019673.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757061|gb|ACT15137.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 111 Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 26/120 (21%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISE 64 N D+ +R++ R+ G+SQ+KLG G + ++ +YEKGV+ Q ++E Sbjct: 6 NYHDVF-CQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIETAQQLAE 64 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L+ P+++F+ + + ++ F+ + K R +++ LV+ Sbjct: 65 ALDVPLAYFYTEND--------------------ELAEMMLAFLALSPEK-RAEVLALVK 103 >gi|282600090|ref|ZP_05972947.2| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282566637|gb|EFB72172.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 99 Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNTK--YPVACAVGQKIKSLRKAQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLV 58 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEEN 89 + +VL + FF +V + +E+ Sbjct: 59 RVLKVLGVNMGEFFGEVLQDDMNATEGKES 88 >gi|296877345|ref|ZP_06901385.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431865|gb|EFH17672.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 228 Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 42/73 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++++RR L ++Q+ + + LG+++Q +E+GV + ++Q + ++L P FF ++ Sbjct: 5 EKLKIRRKELKLTQKDIADQLGVSYQAYSAWERGVKQPSREKVQQLEQILNVPKGFFTEI 64 Query: 77 SPTVCSDISSEEN 89 + S+E Sbjct: 65 EIVRLYNTLSDEG 77 >gi|212711628|ref|ZP_03319756.1| hypothetical protein PROVALCAL_02703 [Providencia alcalifaciens DSM 30120] gi|212685730|gb|EEB45258.1| hypothetical protein PROVALCAL_02703 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +GK+I R + GMS + + + ++ QQ +YE+GVNR+ RL + + Sbjct: 7 PISRIIGKKITYYRKMNGMSLCDISKMIHVSEQQQSRYERGVNRINLDRLHQYARIFSID 66 Query: 70 ISFFFDVSPTVCSDI 84 + FF ++ +I Sbjct: 67 LIDFFVLNEHDADNI 81 >gi|146296429|ref|YP_001180200.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410005|gb|ABP67009.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 40/71 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++++ R G++QE++ + LGI Q+ YE GV + LQ ++++ +++FF Sbjct: 10 IGQKLQEARKKAGLTQEQVADYLGINKVQLSYYENGVREISIGTLQQLADLYGYTLNYFF 69 Query: 75 DVSPTVCSDIS 85 D + +S Sbjct: 70 DDEKSTDPAVS 80 >gi|302672234|ref|YP_003832194.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396707|gb|ADL35612.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 374 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 4/95 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G +I+ R+ ++QEKL E L ++FQ + ++E G++ S + I+ + Sbjct: 3 NLGSKIKELRIAENLTQEKLAEELNVSFQSISRWENGISTPDISLIPAIARFFGVSTDYL 62 Query: 74 FDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 F + SE E D+ +G L+ + Sbjct: 63 FGLQDEESEAEKSELEAAYWDY--RKEG-NLDEAY 94 >gi|197284093|ref|YP_002149965.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227358035|ref|ZP_03842377.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194681580|emb|CAR40549.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227161770|gb|EEI46802.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 98 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 35/64 (54%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +G +IR +R L +S + + E +G++ QQ +YE G+ ++ L I++ L Sbjct: 6 PISQIIGHKIRQQRQHLRLSAKAVAERVGVSQQQFSRYENGLCKIDVDMLFLIAKELNVT 65 Query: 70 ISFF 73 + F Sbjct: 66 PTAF 69 >gi|183599870|ref|ZP_02961363.1| hypothetical protein PROSTU_03389 [Providencia stuartii ATCC 25827] gi|188022143|gb|EDU60183.1| hypothetical protein PROSTU_03389 [Providencia stuartii ATCC 25827] Length = 113 Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ R S K+ LGI+ QQ +YE+GVN + L +I +L+ +S FF Sbjct: 14 IGEEIKRLRKASSFSGTKMASELGISQQQYSRYERGVNTISVDALLNILCILDCDVSSFF 73 >gi|229119313|ref|ZP_04248616.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] gi|228664179|gb|EEL19717.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] Length = 228 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG++I+ R + M+Q++LG +G + YE G N L I++ L Sbjct: 1 MKQDVSKYVGQQIKNFRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDVLFAIAQAL 60 Query: 67 ESPISFFF 74 + I+ F Sbjct: 61 DISINDLF 68 >gi|225419785|ref|ZP_03762088.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme DSM 15981] gi|225041568|gb|EEG51814.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme DSM 15981] Length = 264 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 36/79 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++G RIR+ R M+ ++L + + + V KYE G + L I++VL Sbjct: 26 VSEHIGGRIRMYRKAREMTLQQLADSIHKSRASVSKYENGEITLDVETLFEIAQVLMVSP 85 Query: 71 SFFFDVSPTVCSDISSEEN 89 S DV P + + N Sbjct: 86 SQLMDVRPPMPKSAETSPN 104 >gi|238027673|ref|YP_002911904.1| putative phage repressor [Burkholderia glumae BGR1] gi|237876867|gb|ACR29200.1| Putative phage repressor [Burkholderia glumae BGR1] Length = 241 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RIR +R+ G++ +++G+ GI+ V +E+G R +L ++ +L++ I+F Sbjct: 1 MDIGSRIREKRLAHGLTLQQVGDMFGISRSAVASWERGATRPDQDKLPRLARILKTSIAF 60 Query: 73 FFDVS---PTVCSDISSEENNVMD 93 SD ++++ V + Sbjct: 61 LLSGERRHDIGGSDSPTDDDEVTE 84 >gi|46019830|emb|CAE52354.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 228 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 56/120 (46%), Gaps = 26/120 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + LGI++Q +E+GV +++ + ++L+ P +F + Sbjct: 5 EKLKARRKELKLTQKNIADQLGISYQAYSAWERGVKEPSKEKVKRLEQILKVPRGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + + K + +++E R +V EK + I Sbjct: 64 ------------------------IEIVRLYNTLSN-KGKNQVVEYARDLVQKEKTQQVI 98 >gi|261344511|ref|ZP_05972155.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567421|gb|EFB72956.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 95 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +VG +IR R GMS +KL E +GI+ Q +YE G + + +S++ Sbjct: 5 ISKSVGLKIRTLRESHGMSGKKLSELMGISQQHQSRYENGEVNIHVDTIYLLSQIFSVEP 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 +FF + +EEN + T + Sbjct: 65 IYFFSEFDRHNNH--NEENALQKNYYTAE 91 >gi|167751674|ref|ZP_02423801.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] gi|167655482|gb|EDR99611.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] Length = 271 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I +R LG++Q+ L E L ++FQ + K+E G + L I+ +L++ I Sbjct: 1 MNIGNVISEKRKALGLTQQALAEKLHVSFQAISKWENGTSCPDIELLPQIAAILKTTIDS 60 Query: 73 FFDVSPTVCSD 83 +D Sbjct: 61 LLGYPSQSVTD 71 >gi|212712199|ref|ZP_03320327.1| hypothetical protein PROVALCAL_03284 [Providencia alcalifaciens DSM 30120] gi|212684945|gb|EEB44473.1| hypothetical protein PROVALCAL_03284 [Providencia alcalifaciens DSM 30120] Length = 99 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNTK--YPVACAVGQKIKSLRKAQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLV 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 + +VL + FF ++ S E + Sbjct: 59 RVLKVLGVNMGEFFSEVLQDDTNASEERES 88 >gi|295094125|emb|CBK83216.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 242 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R G++QE+ E +G++ Q V K+E+ RL I E+L+ + Sbjct: 2 LLIGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVG- 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 ++ + + E D ST + + L Sbjct: 61 --ELIYGKGDEPEAPEEVSGDGTSTNNAVHL 89 >gi|225374593|ref|ZP_03751814.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans DSM 16841] gi|225213545|gb|EEG95899.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans DSM 16841] Length = 179 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R + G+SQE LG+ GI ++KYE G+ +L I+ L I+ F D Sbjct: 4 GEKIKYFRNMRGISQETLGQLSGINSATIKKYEYGIRNPKPDQLLKIANALGISINIFMD 63 Query: 76 VSPTVCSDISS 86 SD+ S Sbjct: 64 FDIETVSDVLS 74 >gi|331086447|ref|ZP_08335527.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406213|gb|EGG85736.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 179 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R + G+SQE LG+ GI ++KYE G+ +L I+ L I+ F D Sbjct: 4 GEKIKYFRNMRGISQETLGQLSGINSSTIKKYEYGIRNPKPDQLLKIANALGISINIFMD 63 Query: 76 VSPTVCSDISS 86 SD+ S Sbjct: 64 FDIETVSDVLS 74 >gi|269120018|ref|YP_003308195.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268613896|gb|ACZ08264.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 108 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I+ R ++Q++L + +G V KYE G V + L ISE+L++P+S Sbjct: 3 KLIGSNIKNYRKTNKLTQQELADKIGKHKITVAKYESGKISVPMAVLHEISEILDTPMSD 62 Query: 73 FFDVSPTVCSDISSEENN 90 FF +P + +E Sbjct: 63 FFKENPISIDNFEPKEKY 80 >gi|229822080|ref|YP_002883606.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567993|gb|ACQ81844.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 488 Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 5/132 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RIR R ++ + L G Q+ E G V S LQ I+ L+ + Sbjct: 10 LTVGRRIRHFRTERRLTLDDLARLTGSAASQLSLVENGRREVRVSLLQQIARALDVSPAD 69 Query: 73 FFDVSPTVCS---DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + P +I+ EE +T GL R ++ + + ++ L + Sbjct: 70 LLEAEPPTRRAALEIALEEAQRGSLYATL-GLPAVRASKRLPTEAL-EALVGLHSELARR 127 Query: 130 EKKYRTIEEECM 141 E + EE Sbjct: 128 ESEASATPEEAR 139 >gi|332654251|ref|ZP_08419995.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517337|gb|EGJ46942.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI L R G+SQE+LGE LG++ Q V K+E G N + L + + + Sbjct: 5 ERIALARKQAGLSQEQLGEKLGVSRQAVSKWESGQNNPDVAYLAEMCRLFGVSSDWLLLG 64 Query: 77 SPTVCSDISS 86 T + + Sbjct: 65 KETEQASAPA 74 >gi|210610934|ref|ZP_03288659.1| hypothetical protein CLONEX_00849 [Clostridium nexile DSM 1787] gi|210152234|gb|EEA83241.1| hypothetical protein CLONEX_00849 [Clostridium nexile DSM 1787] Length = 157 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R I G+SQE LG GI ++KYE G+ +L I+ L I+ Sbjct: 1 MTVGEKIKYYRNIRGISQEMLGNLSGINPATIKKYEYGIRNPKPDQLLKITNALGISINL 60 Query: 73 FFDVSPTVCSDISS 86 F D SD+ S Sbjct: 61 FMDFDIETVSDVLS 74 >gi|323126526|gb|ADX23823.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 38/73 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + E LGI++Q +E+GV A ++ + ++L P +F ++ Sbjct: 5 EKLKERRKELKLTQKDIAEKLGISYQAYSAWERGVKEPSAEKVSQLEKLLNVPKGYFTEI 64 Query: 77 SPTVCSDISSEEN 89 + S Sbjct: 65 EIVRLYNTLSSSG 77 >gi|183597904|ref|ZP_02959397.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] gi|188022666|gb|EDU60706.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] Length = 119 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGK I R G++ ++L + L ++ QQ+ +YE+GV + L I L +S Sbjct: 14 IAVGKEIFRLRKKRGLTGKQLAKKLNVSQQQISRYERGVCNINVDTLFVILHELGCSLSN 73 Query: 73 FFDVSPTVCSDIS 85 FF +D Sbjct: 74 FFSAVYLSINDTE 86 >gi|150020298|ref|YP_001305652.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149792819|gb|ABR30267.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 244 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R+ +SQE+L + LGI+ + + YE L+ I+++ +++ Sbjct: 1 MDLGEKIKQLRLERDISQEQLAKRLGISRESISHYENNRIVPPVHILREIAKIFNVSVNY 60 Query: 73 FFDVSPTVCSDISSEE 88 FF+ + E Sbjct: 61 FFEEEHYDKNVKGESE 76 >gi|311064246|ref|YP_003970971.1| hypothetical protein BBPR_0856 [Bifidobacterium bifidum PRL2010] gi|310866565|gb|ADP35934.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum PRL2010] Length = 405 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+++R R+ G++ +L E G++ Q + KYEK N S L ++ L PIS+F Sbjct: 16 GEKLRKARLYRGLTLTELAEETGVSKQALSKYEKNQNEPTPSNLFALARSLNFPISYF 73 >gi|197286053|ref|YP_002151925.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227356567|ref|ZP_03840954.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194683540|emb|CAR44391.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227163323|gb|EEI48250.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 117 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NKK + VG RI++ R GM+ +LG LG++ Q ++E G + + Sbjct: 17 IMNKK----ISKIVGARIKMLRQQHGMTGSELGALLGVSQQHQSRFENGECNIHVDVIYL 72 Query: 62 ISEVLESPISFFFDV 76 +S + + +++FF Sbjct: 73 LSYIFKVKLNYFFQD 87 >gi|259047500|ref|ZP_05737901.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035691|gb|EEW36946.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 180 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R+ G++QE+L E ++ + + E ++ I EVL P + Sbjct: 1 MEIGHQLRALRIQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCPAAD 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FFD P I EE+ M Sbjct: 61 FFDEGPEEALTIYREEDMTM 80 >gi|254447927|ref|ZP_05061391.1| helix-turn-helix domain protein [gamma proteobacterium HTCC5015] gi|198262353|gb|EDY86634.1| helix-turn-helix domain protein [gamma proteobacterium HTCC5015] Length = 363 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +RIR R + GM+ +++ + +G I+ Q + KYEKG + ++RL +++VL +FF Sbjct: 4 ERIRRARALKGMTLQEVADQIGGISKQAISKYEKGKDAPNSTRLIQLADVLGVKPEYFFR 63 Query: 76 VSPTVCSDIS 85 ++ Sbjct: 64 ADSVELGEVD 73 >gi|212711630|ref|ZP_03319758.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] gi|212685732|gb|EEB45260.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 37/79 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V VG +IR R G+S +KL E +GI+ Q + +YE G + L H S + Sbjct: 5 VSKAVGLKIRALRESRGISGKKLSELMGISQQHLSRYENGDVNIHVDTLYHFSLIFSVDP 64 Query: 71 SFFFDVSPTVCSDISSEEN 89 ++FF + +++ Sbjct: 65 AYFFAEFNERTGNREEQDS 83 >gi|222530426|ref|YP_002574308.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457273|gb|ACM61535.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 122 Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 8/97 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++++ R G++QE++ + LG+ Q+ YE G + LQ ++++ +++F Sbjct: 10 IGQKLQEARKKAGLTQEQVADYLGVNKVQLSYYENGAREISIETLQQLADLYGYTLNYFL 69 Query: 75 DV----SPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 D P V EE D + + L F Sbjct: 70 DDEKSTDPAVSFSFRGEELEKEDL----EVIALANRF 102 >gi|228966936|ref|ZP_04127974.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228792670|gb|EEM40234.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 118 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG ++ +++ PI + F Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S NN+ + + + Sbjct: 64 GKSDNSIK----SSNNIKEIFESDE 84 >gi|154500477|ref|ZP_02038515.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] gi|150270708|gb|EDM98004.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] Length = 259 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G+SQE+L +G++ Q VQK+E G ++ L ISE + + Sbjct: 4 ERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQPNIDNLVAISEYFGVTLDYLLKG 63 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + + I P Sbjct: 64 DEPGWEESDIPFEDTSQVICAP 85 >gi|325662713|ref|ZP_08151310.1| hypothetical protein HMPREF0490_02050 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471052|gb|EGC74279.1| hypothetical protein HMPREF0490_02050 [Lachnospiraceae bacterium 4_1_37FAA] Length = 180 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R I G+SQE LG GI ++KYE G+ +L I+ L I+ Sbjct: 1 MTVGEKIKYYRNIRGISQEMLGNLSGINPATIKKYEYGIRNPKPDQLLKITNALGISINL 60 Query: 73 FFDVSPTVCSDISS 86 F D SD+ S Sbjct: 61 FMDFDIETVSDVLS 74 >gi|322373520|ref|ZP_08048056.1| putative repressor protein [Streptococcus sp. C150] gi|321278562|gb|EFX55631.1| putative repressor protein [Streptococcus sp. C150] Length = 227 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 55/127 (43%), Gaps = 26/127 (20%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + LGI++Q +E+GV ++ + ++L P +F + Sbjct: 5 EKLKARRKELKITQKDIADQLGISYQAYSAWERGVKEPSKEKVNRLEQILRVPKGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + + K + +++E R +V E + Sbjct: 64 ------------------------IEIARLYNVLSN-KGQNQVLEYTRRLVQEESRKIVT 98 Query: 137 EEECMVE 143 E + E Sbjct: 99 VSENLYE 105 >gi|188026190|ref|ZP_02961203.2| hypothetical protein PROSTU_03206 [Providencia stuartii ATCC 25827] gi|188021969|gb|EDU60009.1| hypothetical protein PROSTU_03206 [Providencia stuartii ATCC 25827] Length = 99 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNTK--YPVACAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLV 58 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMD 93 + +VL+ + FF ++ +E+ D Sbjct: 59 RVLKVLDVNMGEFFSEILQDDTHANEDKESKGFD 92 >gi|228960178|ref|ZP_04121835.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799446|gb|EEM46406.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] Length = 118 Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG ++ +++ PI + F Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S NN+ + + + Sbjct: 64 GKSDNSIK----SSNNIKEIFESDE 84 >gi|268591987|ref|ZP_06126208.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gi|291312378|gb|EFE52831.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 87 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 3/74 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +I N +G ++R RR+ +G + LG+ G++ QQ+ +YE+G RL Sbjct: 3 IYQTEISN---AYIGLQVRKRRLQMGWTAHTLGKKSGLSQQQISRYERGTQNFTIHRLCI 59 Query: 62 ISEVLESPISFFFD 75 + VL+ + +F + Sbjct: 60 FANVLQCDLDYFLE 73 >gi|327439445|dbj|BAK15810.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 133 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 21/124 (16%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R+ SQ L + +G+T V +YE+G + A L I++VLE+ + F Sbjct: 9 FIGNKIKDYRLKKKYSQADLAKLIGVTNTSVSEYERGKVNIDADTLFQIADVLEAKVDDF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVK---VRQKIIELVRSIVSS 129 F S + + L F I+ D K + +++ + S+ Sbjct: 69 FPARK-----------------SDSEPIDLMNEFRNINLDAKYLLMFKEMFDKANSMNEE 111 Query: 130 EKKY 133 E+K Sbjct: 112 ERKK 115 >gi|126179337|ref|YP_001047302.1| hypothetical protein Memar_1391 [Methanoculleus marisnigri JR1] gi|125862131|gb|ABN57320.1| protein of unknown function DUF955 [Methanoculleus marisnigri JR1] Length = 342 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R+ G+SQ L E +G++ + KYE G + L +SE+L + + Sbjct: 1 MTIGERIKSARIGAGLSQRNLAEKMGLSAMAISKYENGEVTPRSGLLIQMSEMLGVNVDY 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|45597387|ref|NP_996677.1| phage repressor [Lactococcus phage phiLC3] gi|21617869|gb|AAK07510.2|AF242738_1 phage repressor [Lactococcus phage phiLC3] Length = 286 Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 44/89 (49%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G+SQE+L + +G+ + YE G+ +L +SEV + I Sbjct: 6 INKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 FF + + ++SS + + S + Sbjct: 66 DDFFPQTDSTRMNVSSILSEINKISSQLE 94 >gi|321157314|emb|CBW39296.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 228 Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 41/73 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LGIT+Q +E+G+ + +++ + ++L P +F +V Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSTWERGIKQPSREKIKLLEQILNVPKGYFTEV 64 Query: 77 SPTVCSDISSEEN 89 + S+E Sbjct: 65 EIVRLYNTLSDEG 77 >gi|319650747|ref|ZP_08004886.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] gi|317397604|gb|EFV78303.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] Length = 196 Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 39/75 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR +R L ++ +++ E +G++ V + E+G + L +S + + P+SFFF Sbjct: 15 IGGKIRSKRKTLQLTVDEVAERIGLSQSMVSQIERGKAKPSLDTLWKLSILFDVPLSFFF 74 Query: 75 DVSPTVCSDISSEEN 89 + +S E Sbjct: 75 EGIEKQSVIVSRREE 89 >gi|212711629|ref|ZP_03319757.1| hypothetical protein PROVALCAL_02704 [Providencia alcalifaciens DSM 30120] gi|212685731|gb|EEB45259.1| hypothetical protein PROVALCAL_02704 [Providencia alcalifaciens DSM 30120] Length = 75 Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 38/68 (55%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G +I R + G++ +KL + +G++ QQ +YE+GVNR+ RL + + + Sbjct: 7 ISKMIGSKIIYYRKMNGVTLQKLADTIGVSKQQQSRYERGVNRINLDRLAQYANYFDIDL 66 Query: 71 SFFFDVSP 78 + D++ Sbjct: 67 NRLLDIND 74 >gi|307708176|ref|ZP_07644643.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615622|gb|EFN94828.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 228 Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 53/119 (44%), Gaps = 26/119 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ P +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVFQLENILKVPKGYFTQ- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +++ R + + + ++K++ R++ E+ ++ Sbjct: 64 ------------------------IEIVRLYHSL-SKQGQEKVVLYARNLSQEEQAHKV 97 >gi|256545968|ref|ZP_05473323.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256398390|gb|EEU12012.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 166 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ +R L ++QE L + L I+ Q V K+EK ++ L +SE+ I +F Sbjct: 2 IGQKIKNKRKELNLTQEYLAKELNISRQAVSKWEKEISEPSMDNLIKLSEIFGVDIGYF 60 >gi|218459941|ref|ZP_03500032.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 90 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 65 VLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L + SFFF+ + D + V +F+ T +GL LNR F++I D ++R I Sbjct: 1 MLHTSPSFFFEQDDSERLAVRELDAPDHADPVAEFLRTKEGLVLNRAFLKIADPQIRATI 60 Query: 120 IELVRSIVSSEKKYRTI 136 I LV ++ +E + T+ Sbjct: 61 IALVTAMGQAESRGPTL 77 >gi|268593156|ref|ZP_06127377.1| transcriptional regulator, XRE family [Providencia rettgeri DSM 1131] gi|291311202|gb|EFE51655.1| transcriptional regulator, XRE family [Providencia rettgeri DSM 1131] Length = 99 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNTK--YPVACAVGQKIKALRRAQGFTVFQLAKEIDISEQQLFRYERGVNRIDIDCLV 58 Query: 61 HISEVLESPISFFF 74 + +VL+ + FF Sbjct: 59 RVLKVLDVNMGEFF 72 >gi|13487804|ref|NP_108682.1| cI2009 [Lactococcus phage Tuc2009] gi|509672|gb|AAA21825.1| cI2009 [Bacteriophage Tuc2009] Length = 286 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 44/89 (49%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G+SQE+L + +G+ + YE G+ +L +SEV + I Sbjct: 6 INKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 FF + + ++SS + + S + Sbjct: 66 DDFFPQTDSTRMNVSSILSEINKISSQLE 94 >gi|291288131|ref|YP_003504947.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885291|gb|ADD68991.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 141 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R LG+SQ +LG+ L + Q + YEKG + + AS+L IS I + Sbjct: 23 MNIGIKIKELRAELGISQNELGQLLNVKQQVISYYEKG-DDIDASKLATISSEYNIDIRY 81 Query: 73 FFDVSP 78 FF P Sbjct: 82 FFSDKP 87 >gi|325263078|ref|ZP_08129813.1| DNA-binding protein [Clostridium sp. D5] gi|324031471|gb|EGB92751.1| DNA-binding protein [Clostridium sp. D5] Length = 207 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I++ R + G++Q++L E +GI Q + K E+G+N LQ ++E+L+ + Sbjct: 11 LGHNIQVIRKLKGLTQQELSEQIGINLQSLSKIERGINYPTFDTLQKLAEILDVTPN--- 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 ++ S E N++ F+ + L Sbjct: 68 ELLAGELKSTSHIEANILKFLEHEERL 94 >gi|229061582|ref|ZP_04198926.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] gi|228717816|gb|EEL69466.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] Length = 118 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG+ ++ +++ PI + F Sbjct: 4 IGERIFDLRKERKLTQEKIGENIGVSKQTISKYEKGIKIPSRENIEKLADFFNVPIDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S T NN+ + + + Sbjct: 64 GKSDTSIK----SSNNIKEIFESDE 84 >gi|329889812|ref|ZP_08268155.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845113|gb|EGF94677.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 132 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+R+R R+ G +Q ++ L ++ Q QKYE G R+ L++ Sbjct: 7 IEQAIGQRLRAARLKAGKTQAEVAAALDVSHQAYQKYEDGDVRITIGAFVRACAELQTDP 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + ++ P + SD + S+ G +L + ++ + R Sbjct: 67 A---EILPRLMSDRGPAPDPFAALGSSIGGYELADCYARMSGFQRR 109 >gi|332653067|ref|ZP_08418812.1| transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518213|gb|EGJ47816.1| transcriptional regulator [Ruminococcaceae bacterium D16] Length = 285 Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R LG+SQEKL E +G++ Q V K+E G +L ++ VLE + Sbjct: 3 MTIGEIIQRERTRLGLSQEKLAEQVGVSRQAVSKWELGDAVPDTDKLVPLARVLEISVDT 62 Query: 73 FFDVSPTVCSDISSEENN 90 D P + E Sbjct: 63 LLDHHPQETEETPKEIEE 80 >gi|183597550|ref|ZP_02959043.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] gi|188023147|gb|EDU61187.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] Length = 132 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R M+ ++LGE L ++ QQ+ +YE GV + L + +L+ PI FF Sbjct: 33 IGRQIYFIRKARCMTGKQLGEQLNVSQQQISRYENGVCHIDVDTLIRLLYILDMPIDQFF 92 >gi|295696288|ref|YP_003589526.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] gi|295411890|gb|ADG06382.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] Length = 392 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI RR LG SQE L + LG++ Q + E G + ++ VL + + FD Sbjct: 13 GRRISERRKALGWSQELLADRLGVSRQFIGALEAGRSWPSVPVALELARVLGTSVEALFD 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P +I + V + T L+ R Sbjct: 73 --PQEAGEIVWGDPEVGATVGTR--LRFAR 98 >gi|319934812|ref|ZP_08009257.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319810189|gb|EFW06551.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 302 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G +++ R G+SQE L E L ++ Q V K+E G +L IS++ I + Sbjct: 1 MDFGMKLQSLRKEKGLSQEALAEKLHVSRQAVSKWESGAGYPEMDKLILISDLFGVTIDY 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 D +V D +E M+ + + R+F Sbjct: 61 LIKDSHESVPDDQRAESKYFMNSQKIKEYMNFKRHF 96 >gi|261366423|ref|ZP_05979306.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571685|gb|EFB77220.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 200 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G+RI+ R ++Q +L + LG + + VQ YE G +R+ + I+ L Sbjct: 2 NLTNEQIGQRIKEVRTEKNITQTQLAKFLGKSLRTVQSYESGESRIFFDTVCSIANFLGV 61 Query: 69 PISFF--FDVSPTVCSDISSEENNVMDFISTPD 99 S+ F+ + +S + + + Sbjct: 62 TPSYLLGFEEPQLQLNSLSDVIAVLYELNKKKE 94 >gi|152967479|ref|YP_001363263.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] gi|151361996|gb|ABS04999.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] Length = 513 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 4/130 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R + G + +LGE +G Q+ + E G S + ++ LE + Sbjct: 33 VGRRIRYHRGVRGWTLAQLGEAVGTAQSQLSQVENGKREPRLSLVAAVARALEVTPADLL 92 Query: 75 DVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D +P + E + ++ GL R + + + ++ L R + Sbjct: 93 DPAPPPSRRAALEIELDRAQRSPLARALGLTEVRAGRALPTDAL-EALVRLHRELARRHD 151 Query: 132 KYRTIEEECM 141 EE Sbjct: 152 AANATPEEAR 161 >gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B] gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B] Length = 244 Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 38/77 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G RIR R G++ ++L + GI+ V ++E G ++ A++L +++ L + + + Sbjct: 6 HIGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVEYL 65 Query: 74 FDVSPTVCSDISSEENN 90 + + + Sbjct: 66 LNGDTNDAMSFADSAAS 82 >gi|328955378|ref|YP_004372711.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455702|gb|AEB06896.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 210 Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQ +L + +G T QQ+ +YE G N V +S L +S L IS+ + Sbjct: 5 KISEARHAKGWSQAELAKRIGTTQQQIARYESGDNDVKSSVLIKLSSALGVTISYLLGLE 64 Query: 78 PTVCSDISSE 87 TV + + Sbjct: 65 NTVAAQPAPS 74 >gi|312868437|ref|ZP_07728637.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096182|gb|EFQ54426.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 248 Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L +Q+ + + LG+++Q +E+GV + ++Q + ++L P FF ++ Sbjct: 5 EKLKARRKELKKTQKDIADQLGVSYQAYSAWERGVKQPSREKVQQLEQILNVPKGFFTEI 64 Query: 77 SPTVCSDISSEE--NNVMDFIST 97 + S+E NN ++++ Sbjct: 65 EIVRLYNTLSDEGKNNALNYVRN 87 >gi|187778336|ref|ZP_02994809.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] gi|187771961|gb|EDU35763.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] Length = 111 Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 25/119 (21%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G R++ R GM+QE+LG+ L IT Q V YEKG N L I+++ + + Sbjct: 18 ILFGDRLKELREEKGMTQEQLGKLLNITKQAVYSYEKGDNEPTIDALVKIADIFNVSLDY 77 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 T + LN + D K ++ +++L++ I +K Sbjct: 78 LLG--------------------RTKERYNLN-----LKDKKNKELLLDLIKVIEKHKK 111 >gi|227824270|ref|ZP_03989102.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827135|ref|ZP_04453204.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|331084539|ref|ZP_08333639.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] gi|157816229|gb|ABV82121.1| HTH domain protein [Eubacterium saburreum] gi|157816232|gb|ABV82123.1| HTH domain protein [Streptococcus salivarius] gi|226904769|gb|EEH90687.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788753|gb|EEP24867.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|330401089|gb|EGG80683.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] Length = 114 Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGKLNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|163813936|ref|ZP_02205330.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] gi|158450806|gb|EDP27801.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] Length = 242 Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R G++QE+ E +G++ Q V K+E+ RL I E+L+ + Sbjct: 2 LLIGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVG- 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 ++ + + E D S + + L Sbjct: 61 --ELVYGKGEESETPEEVSRDGTSANNAVHL 89 >gi|261344094|ref|ZP_05971738.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567684|gb|EFB73219.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+RI+ R+ G S + LG+ GI+ QQ+ +YE+GVNR+ L + I Sbjct: 12 IGQRIKSLRLQNGWSGDALGKVTGISQQQISRYERGVNRIDVESLAKFANAFNVSI 67 >gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R LG++Q +LGE +G++ Q + KYE G + L +S+ PI + Sbjct: 10 NRIAELRKKLGLTQTRLGEEIGVSQQTISKYENGDENIPGDMLLALSKFFRVPIDYILRK 69 Query: 77 SPTVCSDISSEENNVMDFIST 97 ++ +M+ Sbjct: 70 EEEQQQREQNDRKEIMELYRD 90 >gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] Length = 224 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q +LG LG++ + YEKG ++G L ++ L P+ +F Sbjct: 5 IGARIKKAREEKYLTQAELGVKLGVSATAINYYEKGKRKIGIDDLYRMANALGKPLEYF 63 >gi|325833019|ref|ZP_08165646.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485736|gb|EGC88201.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 242 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (47%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +++ + +R+ R G SQE+L E LG++ Q V K+E+ + L Sbjct: 1 MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLI 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 ++++ + + V D++ EE + Sbjct: 61 ALAKLYGVSLDDLLRIDEDVVDDVAFEEKD 90 >gi|217967072|ref|YP_002352578.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336171|gb|ACK41964.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 105 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 19/114 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVGKRIR R M E L E G++ + E+G+ L+ I++ L P S+ Sbjct: 1 MNVGKRIREIRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAQALNLPTSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 FF + + F+ T L D R+ II+L++S+ Sbjct: 61 FFSEDN---------DETIETFLRTKTSL----------DEDERRMIIQLIKSL 95 >gi|219667464|ref|YP_002457899.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537724|gb|ACL19463.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 113 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 13/121 (10%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + V + +R R G++Q++L + LG+ + +EKG N + S L +I LE + Sbjct: 4 IKLRVAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSS 129 + +S S + E+ L L F ++ D K+ K++ +V + Sbjct: 64 DDIYGISDKKISPVELTEDE----------LALISNFRKLSHDNKM--KVLGMVELKAAE 111 Query: 130 E 130 + Sbjct: 112 D 112 >gi|332637123|ref|ZP_08415986.1| putative transcriptional regulator [Weissella cibaria KACC 11862] Length = 137 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI +++ R G+SQ++L + L +T Q V K+E G + +R+Q I+++L+ + Sbjct: 1 MDIVFAQQLTNLRKQKGLSQQQLADKLYMTRQAVSKWETGESSPDLNRMQEIADILDVSV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDG 100 V +S + V +++ + Sbjct: 61 QVLL-FGTQVEPGKTSFRDKVSEYMQQDEA 89 >gi|323693263|ref|ZP_08107481.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502746|gb|EGB18590.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|317500621|ref|ZP_07958840.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316897939|gb|EFV19991.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 151 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|323487601|ref|ZP_08092891.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] gi|157816226|gb|ABV82119.1| HTH domain protein [Streptococcus parasanguinis] gi|198387264|gb|ACH87089.1| helix-turn-helix XRE-family-like protein [Escherichia coli] gi|323399100|gb|EGA91508.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] Length = 151 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 211 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 23/105 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + IRL R I+G++Q +L E +G+ V ++E G + +Q +++ L P++ Sbjct: 5 ENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSNPPIKTIQRLAQTLGVPVTI---- 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKI 119 + D L R +I ++R++I Sbjct: 61 -----------------VVGDNDANDLKRALDKIRAPCARLRRRI 88 >gi|167755999|ref|ZP_02428126.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] gi|167703991|gb|EDS18570.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] Length = 384 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 43/85 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R G+SQE+L L I+ Q + K+E +N ++ +++ LE ++ Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + + + E+ + + T Sbjct: 61 LLGLEEDSNDEYAKLESILNQVVLT 85 >gi|124486416|ref|YP_001031032.1| adenine deaminase [Methanocorpusculum labreanum Z] gi|124363957|gb|ABN07765.1| helix-turn-helix domain protein [Methanocorpusculum labreanum Z] Length = 347 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R + G++QE+LGE + + + KYE G +S L +S L I +FF Sbjct: 3 GERLKQARKLSGLTQEELGELVSVEKMTISKYEAGKISPSSSTLISLSRALHVDIDYFFR 62 Query: 76 VSPTVCSDISS 86 + V + Sbjct: 63 ETSVVLASTPQ 73 >gi|307704993|ref|ZP_07641880.1| transcriptional regulator [Streptococcus mitis SK597] gi|307621444|gb|EFO00494.1| transcriptional regulator [Streptococcus mitis SK597] Length = 288 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 4/106 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L MSQ +L E GI Q Q+ + E G GA L +S+ L+ I +FF+ Sbjct: 8 RLKNRRKELKMSQRELAE--GICKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFFNE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-RQKIIE 121 D SE + T + +Y +++ VKV R +++ Sbjct: 66 QIGEEIDELSEFKKLAQTFITNRNYESLKYIYELESVKVHRLSLVD 111 >gi|257460926|ref|ZP_05626027.1| putative transcriptional regulator [Campylobacter gracilis RM3268] gi|257442257|gb|EEV17399.1| putative transcriptional regulator [Campylobacter gracilis RM3268] Length = 233 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI+ R G++Q +L GI+ +Q YE + +L IS+VL+ I F Sbjct: 1 MNLGLRIKNLREERGLTQLELANLSGISRASIQLYEADKVEIPVKKLSDISKVLDVDIDF 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|169335178|ref|ZP_02862371.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis DSM 17244] gi|169257916|gb|EDS71882.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis DSM 17244] Length = 172 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPI 70 ++ +G RI+ R G+S +LGE +GI+ +Q+YE G +NR+ ++ I+ L Sbjct: 3 NLEIGNRIKQVRQEKGLSLRELGEIIGISGATIQRYENGLINRLKLPVIESIANALGVNP 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S+ S + +++N + + + L F ++ + ++ Sbjct: 63 SWLIFKSKNKYKTLVNDKNTI-----SSENKDLLNKFNKLSPNRQKR 104 >gi|253583791|ref|ZP_04860989.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251834363|gb|EES62926.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 168 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 +I+ R GMSQEKL + LG++ Q V K+E G + ++ +S + E + DV Sbjct: 6 KIQQLRKQNGMSQEKLAQLLGVSKQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLKDV 65 Query: 77 SPTVCSDISSEENN 90 S C DI +E Sbjct: 66 SEEKCIDILRKEKE 79 >gi|257469363|ref|ZP_05633457.1| hypothetical protein FulcA4_08479 [Fusobacterium ulcerans ATCC 49185] gi|317063609|ref|ZP_07928094.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689285|gb|EFS26120.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 168 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 +I+ R GMSQEKL + LG++ Q V K+E G + ++ +S + E + DV Sbjct: 6 KIQQLRKQNGMSQEKLAQLLGVSRQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLKDV 65 Query: 77 SPTVCSDISSEENN 90 + C DI +E Sbjct: 66 AEEKCIDILRKEKE 79 >gi|297543547|ref|YP_003675849.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841322|gb|ADH59838.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 129 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G++Q++L LG++ + V YE G LQ I++ + + Sbjct: 2 LGERIKELRKKKGVTQKELALYLGVSDRAVGYYESGQRTPPPDILQKIADFFNVSVDYLL 61 Query: 75 D-----VSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQID--DVKVRQKIIELVRSI 126 ++ S++ + +F +T + L F Q K ++II ++++I Sbjct: 62 GRTGVYNPTDEITEAISDDPELFEFWNTLKEREDLKLLFKQTKKLSPKDIKQIIRIIKAI 121 Query: 127 VSSEKKYR 134 E K Sbjct: 122 EDEEDKEE 129 >gi|222087768|ref|YP_002546305.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725216|gb|ACM28372.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ ++ L Sbjct: 35 NNLEMAIGHEVRAYRKKLGITGADLASATGISLGMLSKIENGNTSPSLTTLQSLARALGV 94 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF + + F+ +GL++ R Sbjct: 95 PVTAFFRRFEEKRNAV---------FVKAGEGLEMER 122 >gi|150378020|ref|YP_001314615.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032567|gb|ABR64682.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 219 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 9/99 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N +++ +G +R R LG++ L + G++ + K E G + LQ +S+ L Sbjct: 27 RANNLEMAIGHEVRTYRKKLGITVADLAQATGMSIGMLSKIENGNISPSLTTLQALSKAL 86 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF EE N F+ +G+ L R Sbjct: 87 GVPLTAFFRGF---------EEPNSASFVKAGEGVNLER 116 >gi|78485682|ref|YP_391607.1| XRE family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363968|gb|ABB41933.1| transcriptional regulator, XRE family [Thiomicrospira crunogena XCL-2] Length = 198 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+++GK I R G++ + E GI+ + K E G L IS L PI Sbjct: 9 LDLHIGKIINNARKKQGLTIADIAEQSGISRGMLSKIENGQVSPSLDSLLKISRTLGVPI 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 S FF + + + L++ R Sbjct: 69 SSFFREFDNEEGGA--------QLVRSEEKLEVVR 95 >gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] Length = 143 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RR ++G++QE+L E LG++ Q V K+E G + + ++E L+ + Sbjct: 5 IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 64 Query: 75 DVSPT 79 P Sbjct: 65 GYDPH 69 >gi|332638348|ref|ZP_08417211.1| XRE family transcriptional regulator [Weissella cibaria KACC 11862] Length = 180 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ RR GMSQ+ L + LGI+ Q + K+E G + +S++ + Sbjct: 1 MEIGHNIQQRREDKGMSQQDLADYLGISRQSISKWENGSALPSFKNVLALSDLFVVSLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + S E+ Sbjct: 61 LVKGDEALIEKFESGES 77 >gi|183601014|ref|ZP_02962507.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] gi|188019351|gb|EDU57391.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] Length = 91 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+RI+ R+ G S E LG+ GI+ QQ+ ++E+GVNR+ L + I Sbjct: 12 VGQRIKSLRLQNGWSGEALGKITGISQQQISRFERGVNRIDVESLAKFANAFNVDI 67 >gi|315644486|ref|ZP_07897618.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315279993|gb|EFU43290.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 272 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K I R G++QE L LG+TFQ V K+E G + L +S++LE + F Sbjct: 7 KNINRYRKERGLTQEALAHKLGVTFQAVSKWETGQTMPDVALLPELSQLLEVSMDKLFGY 66 Query: 77 SPTVCS-DISSEENNVMDFISTPD 99 S T S I EE D+ + Sbjct: 67 SSTGKSLSIYEEEYKTPDYYWGTE 90 >gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] Length = 140 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RR ++G++QE+L E LG++ Q V K+E G + + ++E L+ + Sbjct: 2 IGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 61 Query: 75 DVSPT 79 P Sbjct: 62 GYDPH 66 >gi|215486344|ref|YP_002328775.1| transcriptional repressor DicA [Escherichia coli O127:H6 str. E2348/69] gi|254792795|ref|YP_003077632.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|260843554|ref|YP_003221332.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|261257017|ref|ZP_05949550.1| putative phage repressor protein CI [Escherichia coli O157:H7 str. FRIK966] gi|215264416|emb|CAS08774.1| predicted phage repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|254592195|gb|ACT71556.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|257758701|dbj|BAI30198.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|323977164|gb|EGB72251.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 135 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 2/110 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 4 KTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D N+ +D + D L++ R + + + + +I EL Sbjct: 64 ILFGDEDKTPDPPVALNSALDL--SEDELEMLRLYRALPKSEQQAQISEL 111 >gi|150021357|ref|YP_001306711.1| putative prophage repressor [Thermosipho melanesiensis BI429] gi|149793878|gb|ABR31326.1| putative prophage repressor [Thermosipho melanesiensis BI429] Length = 206 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 35/70 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R+ G++QE+LG + + + + YE G L+ +++ + + + Sbjct: 1 MNIGEKIKFLRLQKGLTQEQLGNIINVGQRTISAYESGKATPSVEVLKSLADYFDVAVDY 60 Query: 73 FFDVSPTVCS 82 F P Sbjct: 61 FLSDKPGQTE 70 >gi|294502078|ref|YP_003566143.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] gi|294342062|emb|CBH22727.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] Length = 392 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R MSQ+++ LG+T + +YE G ++GA L+ ++ + P+S F Sbjct: 9 LGQRLRQARKQAHMSQKEVAGHLGVTASALSQYESGKRKIGALALERLARLYSVPLSSLF 68 Query: 75 -----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELV 123 + P + E N+ +L R +VR +++ EL Sbjct: 69 SEEGGEERPDWERALLGETENM-SPEGRKGVAKLVR--------RVRQFRELHELA 115 >gi|296533524|ref|ZP_06896097.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296266156|gb|EFH12208.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 208 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+ +RL R LG+S ++LG G++ + + E+G+ L+ +S L+ PIS Sbjct: 25 DRRLGECVRLLRQRLGLSIQELGRRTGLSIGMISQLERGLATPSVRTLRLLSLALQVPIS 84 Query: 72 FFFDVSPTVCS 82 FFF+ P S Sbjct: 85 FFFEERPEGAS 95 >gi|327404285|ref|YP_004345123.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319793|gb|AEA44285.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 121 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +IR R + G+SQ+ L LGI+ Q QK E GV ++ R I+ L + F Sbjct: 8 LNLGIKIRFFRDMKGLSQQALAMQLGISQQAYQKIESGVTKLDVERANVIANELGVQLDF 67 Query: 73 FFDVSPT 79 SP Sbjct: 68 LISFSPA 74 >gi|237737130|ref|ZP_04567611.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420992|gb|EEO36039.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 181 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V++N G +I+L+R GM+QE+LGE L ++ Q + K+E + ++ +S + I Sbjct: 17 VNMNFGDKIQLQRKKKGMTQEELGEELNVSRQTITKWESNQSFPEIKKIIKLSYFFDVTI 76 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTP 98 + D ++ E + ST Sbjct: 77 DYLLKDEIEDEERNVIKIEKEEKNIFSTK 105 >gi|291544659|emb|CBL17768.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Ruminococcus sp. 18P13] Length = 208 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +N+G+RI+ R + +Q++L + +G T Q V KYE G + + + +++ I++ L + Sbjct: 1 MNIGERIKTARKEIDKTQQELADAIGTTKQNVYKYENGIITNIPSDKIEAIAKFLHVSPA 60 Query: 72 FFFDVSPTVCSD 83 + F D Sbjct: 61 YLFGWEEESLYD 72 >gi|257413316|ref|ZP_05591602.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203934|gb|EEV02219.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 187 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I R + GM+QE+L E L ++ Q + K+E + IS + + Sbjct: 15 MEIGNKINQLRKLSGMTQEQLAEKLNVSRQTISKWESDSTSPDLESIVKISRIFHVSLDD 74 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 ++ + E+ + D + Sbjct: 75 LLKEGEAGVANKTDEQITLEDLM 97 >gi|163847710|ref|YP_001635754.1| cupin 2 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525574|ref|YP_002570045.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668999|gb|ABY35365.1| Cupin 2 conserved barrel domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449453|gb|ACM53719.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 211 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 1 MVGNKKIPNPV----DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 MV P+ V +++VG RIR R +S L E G+ + E G Sbjct: 1 MVDPVSSPHLVGEIGNVDVGTRIRTLREQRRLSIRALAEASGLAVNTLSLIENGRTSPSV 60 Query: 57 SRLQHISEVLESPISFFF 74 S LQ ++ L+ P+S FF Sbjct: 61 STLQRLAVALQVPVSTFF 78 >gi|119385143|ref|YP_916199.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119374910|gb|ABL70503.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 108 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 33/44 (75%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 MSQ+++ E +G++ QQ+QKYE VNR+ ASRL I+ VL+ P + Sbjct: 1 MSQKQVAERIGVSMQQLQKYETAVNRISASRLVEIANVLQVPPA 44 >gi|291279081|ref|YP_003495916.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290753783|dbj|BAI80160.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 196 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DIN+G+RIR R GM+ + + G + + + E V + L I+ VL ++ Sbjct: 5 DINIGERIRKLRNDRGMTLQDVANLTGFSKALISQIENNVVMPPITTLAKIANVLNVKMT 64 Query: 72 FFFDVS 77 +FF+ Sbjct: 65 YFFEEE 70 >gi|89896705|ref|YP_520192.1| hypothetical protein DSY3959 [Desulfitobacterium hafniense Y51] gi|89336153|dbj|BAE85748.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 106 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 13/115 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +R R G++Q++L + LG+ + +EKG N + S L +I LE + + + Sbjct: 3 ENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLDDIYGI 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSSE 130 S S + E+ L L F ++ D K+ K++ +V + + Sbjct: 63 SDKKISPVELTEDE----------LALISNFRKLSHDNKM--KVLGMVELKAAED 105 >gi|260892597|ref|YP_003238694.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864738|gb|ACX51844.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 151 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 43/81 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ G++Q +L + L + + + KYE+G NR A L+ ++++LE F Sbjct: 9 LGLRIKFARLRKGLTQAELAQKLNVHPETLGKYERGTNRPDAETLRKLADILEVSTDFLV 68 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + SS + +V ++ Sbjct: 69 GRTNDPSPIPSSLDADVETYL 89 >gi|183601133|ref|ZP_02962626.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC 25827] gi|188019477|gb|EDU57517.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC 25827] Length = 131 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I R M+ + L + + ++ QQ+ +YE GV + L I L+ ++ FF Sbjct: 24 IGKEIHKLRKERSMTGKDLAKLVNVSQQQISRYECGVCNITIDTLIVILNALDVSLTDFF 83 Query: 75 D 75 + Sbjct: 84 N 84 >gi|327405730|ref|YP_004346568.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321238|gb|AEA45730.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 298 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 44/84 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R +SQ +L E L I+ Q V K+E+G + L +SE+L+ +++F Sbjct: 7 IGQRIADARKKTTISQAQLSERLFISPQAVGKWERGESMPDIITLNRLSEILDVDLNYFS 66 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D + S+ N++ + + P Sbjct: 67 DGFTSAVSEEKKSSNSLQELLEKP 90 >gi|160894719|ref|ZP_02075494.1| hypothetical protein CLOL250_02270 [Clostridium sp. L2-50] gi|156863653|gb|EDO57084.1| hypothetical protein CLOL250_02270 [Clostridium sp. L2-50] Length = 416 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 36/73 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG I +R LGM+Q++L + L ++FQ + K+E G L+ ++ VL+ + Sbjct: 5 IKVGNFIMGKRKSLGMTQQQLADKLKVSFQAISKWENGTTYPNIEILRDLAIVLDVSVDE 64 Query: 73 FFDVSPTVCSDIS 85 S +S Sbjct: 65 ILAGSERDAEGLS 77 >gi|194337612|ref|YP_002019406.1| helix-turn-helix domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194310089|gb|ACF44789.1| helix-turn-helix domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 359 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R G++ LG +G+T +QKYEKG+ +S L +++ +FF Sbjct: 5 RIRQARQAAGLTLAALGAKIGVTHTAIQKYEKGIITPSSSILLKLAQACGVRTEYFF 61 >gi|295396255|ref|ZP_06806433.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970909|gb|EFG46806.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] Length = 502 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 18/136 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R G++ E+LGE +G Q+ +E G + L +++ L++ + Sbjct: 36 IGRKIRHFRTEQGLTLEQLGERVGRAASQISAFESGNREPSIAVLTALAKALDTSAAELL 95 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---------QKIIELVRS 125 D +P E +P + ++ VR + I+ L RS Sbjct: 96 DPTPVSQRQALELEAERAQ--RSP-------LYSSLNLPTVRVKSLPNDALEAIVGLQRS 146 Query: 126 IVSSEKKYRTIEEECM 141 + KK EE Sbjct: 147 LHDMTKKRAATPEEAR 162 >gi|289168100|ref|YP_003446369.1| transcriptional regulator [Streptococcus mitis B6] gi|288907667|emb|CBJ22504.1| transcriptional regulator [Streptococcus mitis B6] Length = 288 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L MSQ +L E GI Q Q+ + E G GA L +S+ L+ I +FF+ Sbjct: 8 RLKNRRKELKMSQRELAE--GICKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFFNE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D SE + T + +Y +++ VKV + + LV Sbjct: 66 QIVEEIDELSEFKKLAQTFITNRNYESLKYIYELESVKVHR--LSLV 110 >gi|317501737|ref|ZP_07959924.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896859|gb|EFV18943.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] Length = 177 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 2 VGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALGLNVSVFL 61 Query: 75 DVSPTVCSDISS 86 D + D+ S Sbjct: 62 DFNIETVGDVLS 73 >gi|331091855|ref|ZP_08340687.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402754|gb|EGG82321.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] Length = 177 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 2 VGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALGLNVSVFL 61 Query: 75 DVSPTVCSDISS 86 D + D+ S Sbjct: 62 DFNIETVGDVLS 73 >gi|319937527|ref|ZP_08011932.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] gi|319807367|gb|EFW03976.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] Length = 182 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ +SQE + + L ++ Q V K+EKG+++ L +SE+ + Sbjct: 1 MFIGEKIRELRIRNQLSQESIAQLLDVSRQSVSKWEKGLSKPSTDNLLRLSEIFSVSVED 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 D D S + +F+ L Sbjct: 61 LIDNDIQFKKDYES-TSFFKEFLFRKKVL 88 >gi|266626094|ref|ZP_06119029.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288861999|gb|EFC94297.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 102 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R + G+SQEK+ E +GI+ Q V K+E +R L +S + E P++ Sbjct: 4 LGKRIAYYRKLQGLSQEKVAEHIGISRQAVTKWENDNSRPNTDNLLQLSALFEIPLN--- 60 Query: 75 DVSPTVCSDISSEEN 89 ++ + D S EE Sbjct: 61 ELVSSYSEDHSPEEK 75 >gi|322392726|ref|ZP_08066186.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321144718|gb|EFX40119.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 228 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 36/57 (63%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR L ++Q+++ + LGI+FQ +E+GV +++ + ++L+ P +F Sbjct: 5 EKLKARRKELKLTQKEIADQLGISFQAYSAWERGVKEPSEEKVKQLEKILKVPKGYF 61 >gi|312976783|ref|ZP_07788532.1| putative zinc-binding transcriptional regulator, Cro/CI family [Lactobacillus crispatus CTV-05] gi|310896111|gb|EFQ45176.1| putative zinc-binding transcriptional regulator, Cro/CI family [Lactobacillus crispatus CTV-05] Length = 385 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R+ ++ L + +G++ Q + KYE + ++ Q I +VL P+ FF D Sbjct: 12 GKRLKEARLFNHLTMSALADQIGVSKQAISKYEHNKIEISSAVFQKIVQVLNFPLYFFTD 71 Query: 76 VSPTVCSDISS 86 D + Sbjct: 72 FEKVPYQDDGT 82 >gi|319654086|ref|ZP_08008178.1| hypothetical protein HMPREF1013_04798 [Bacillus sp. 2_A_57_CT2] gi|317394279|gb|EFV75025.1| hypothetical protein HMPREF1013_04798 [Bacillus sp. 2_A_57_CT2] Length = 312 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R + GM Q +L E + + Q+ K EKG +S L I+ L+ +S+FF Sbjct: 7 LGKKIKEIRKVRGMKQYELAEGI-CSQAQISKIEKGQVEPLSSTLYLIANKLDVDVSYFF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + + + D S D Sbjct: 66 SNIKVKRNGQAHMLEKLKDARSNSD 90 >gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] Length = 347 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R+ G+S KL + +G++ + KYEKGV + L ++ L+ SF Sbjct: 1 MSIGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVITPDSQMLIRLARALDVKPSF 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|237733315|ref|ZP_04563796.1| predicted protein [Mollicutes bacterium D7] gi|229383696|gb|EEO33787.1| predicted protein [Coprobacillus sp. D7] Length = 138 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 43/85 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R G+SQE+L L I+ Q + K+E +N ++ +++ LE ++ Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + + + E+ + + T Sbjct: 61 LLGLEEDSNDEYAKLESILNQVVLT 85 >gi|296268292|ref|YP_003650924.1| helix-turn-helix domain-containing protein [Thermobispora bispora DSM 43833] gi|296091079|gb|ADG87031.1| helix-turn-helix domain protein [Thermobispora bispora DSM 43833] Length = 370 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 8/99 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R+ G+SQ +L + + + + K E G R+ A L +++ L+ PI F Sbjct: 15 IGERVRQARLAKGLSQLQLAQKVDLDRTMITKIEAGSRRLDALELARLAQALDVPIGHFL 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +P V S + + S P + ++D+ Sbjct: 75 HPAPEVLSHRTPLAEDTATDASQP--------YYRLDNA 105 >gi|332654130|ref|ZP_08419874.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] gi|332517216|gb|EGJ46821.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] Length = 259 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G+SQE L + LG++ Q VQK+E G +R L + + + Sbjct: 7 QRLYELRKQSGLSQEGLADLLGVSRQAVQKWEAGTSRPDLDNLAALGRYFNVSLDYLVTG 66 Query: 77 SPTVCS 82 S Sbjct: 67 QEAQVS 72 >gi|167756126|ref|ZP_02428253.1| hypothetical protein CLORAM_01646 [Clostridium ramosum DSM 1402] gi|167704118|gb|EDS18697.1| hypothetical protein CLORAM_01646 [Clostridium ramosum DSM 1402] Length = 156 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +I+ R G++Q++LGE GI ++KYE +L I+ L P++ F++ Sbjct: 4 GDKIKKIRNYRGLTQKQLGELSGIHEVAIRKYELNKVMPKQEQLLKIANALNVPLNTFYE 63 Query: 76 VSPTVCSDI 84 DI Sbjct: 64 YHIDEKPDI 72 >gi|282600408|ref|ZP_05974197.2| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] gi|282565257|gb|EFB70792.1| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] Length = 185 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N ++I +G++IRL R +S +L + GI+ + K E G + L+ I+ L Sbjct: 1 MSNKINIKIGQKIRLLRQARNLSLNELSQLSGISKAALSKLESGDSNPRIDTLESIAAAL 60 Query: 67 ESPISFFF----DVSPTVCSDISSEENNVMDF 94 P+S F + P I E + + F Sbjct: 61 RFPLSDLFTRQNESYPYFVKAIPQEGDYLEQF 92 >gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 116 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + DI +G+RIR R M+Q+KL E + ++ + + E G V + I+E Sbjct: 3 KKNVSKGDIAIGQRIRKIREEKSMTQKKLAEKVMVSPSSITRLESGQTMVSVFTIIKIAE 62 Query: 65 VLESPISFFFDVSPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDDV 113 VL + ISF + E +D +T L + F I D Sbjct: 63 VLNTSISFLLSGDEDDLNKSDILEIAKKLDRCTTEQREILLQSFGNILDA 112 >gi|293433714|ref|ZP_06662142.1| transcriptional repressor DicA [Escherichia coli B088] gi|291324533|gb|EFE63955.1| transcriptional repressor DicA [Escherichia coli B088] Length = 135 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 2/110 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 4 KTLGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D NN +D + D ++ R + + + + +I EL Sbjct: 64 ILFGDEDKTPDPPVALNNALDL--SEDEFEMLRLYRALPKSEQQAQISEL 111 >gi|197303199|ref|ZP_03168241.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] gi|197297739|gb|EDY32297.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] Length = 108 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ +R+ G++QEK E + ++ + + E+G+++V RL ISE I F Sbjct: 6 KTLGDRIKTKRISQGITQEKFAEHMDVSVGYISQLERGISKVSLERLVSISEYFNCNIDF 65 Query: 73 FFDVSPTVCSD-ISSEENNVMDFISTPD 99 F D + ++ + + +S+ + Sbjct: 66 FIDGINSNTEHYLAQDFEELYAQLSSHE 93 >gi|268592412|ref|ZP_06126633.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312199|gb|EFE52652.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 129 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 10/107 (9%) Query: 2 VGNKKIPNPVDIN-------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 + + K+ +D +G + R G+S L + L I+ QQ+ +YE+G+ + Sbjct: 1 MKSNKLKTSIDSFQKILTEQIGMELSHLRKEKGLSGSDLAKKLKISQQQISRYERGICSI 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 L I LE S FF+ ++ + N+ FI + L Sbjct: 61 NCGMLFSILFYLEISPSAFFESVSLKINEKNPSANS---FIHNSECL 104 >gi|153954565|ref|YP_001395330.1| hypothetical protein CKL_1947 [Clostridium kluyveri DSM 555] gi|219855059|ref|YP_002472181.1| hypothetical protein CKR_1716 [Clostridium kluyveri NBRC 12016] gi|146347423|gb|EDK33959.1| Phage-related protein [Clostridium kluyveri DSM 555] gi|219568783|dbj|BAH06767.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 261 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG +I+ R ++Q++L E +G+T + +YE L I++ L+ I+ Sbjct: 1 MNVGAKIKEIRESKNLTQKQLAEKIGVTPVTITRYENNKREPSIETLNKIAKALDVTIND 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|323357780|ref|YP_004224176.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274151|dbj|BAJ74296.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 211 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G+S L LGI+ V + E+GV + SRL I++ L P+ F Sbjct: 27 VGARIRDLRQARGISARALAATLGISPSAVSQIERGVMQPSVSRLIAITDALGVPLVAAF 86 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR--YFIQIDD 112 D + + + + + L F ++ Sbjct: 87 DPASDRPVEPVGPSGFTLQRAAQAADIVLESGVSFRRLTP 126 >gi|307711376|ref|ZP_07647794.1| peptidase S24-like family protein [Streptococcus mitis SK321] gi|307616794|gb|EFN95976.1| peptidase S24-like family protein [Streptococcus mitis SK321] Length = 228 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 51/119 (42%), Gaps = 26/119 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q ++ E LGI+FQ +E+GV ++ + +L+ P +F Sbjct: 5 EKLKARRKELKLTQREIAEQLGISFQAYSAWERGVKEPSKEKVVQLENILKVPKGYFTQ- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +++ R + + + ++K++ R++ E+ + Sbjct: 64 ------------------------IEIVRLYHSL-SKQGQEKVVLYARNLSQEEQAQKV 97 >gi|190151419|ref|YP_001974330.1| putative transcriptional repressor [Streptococcus phage PH15] gi|190014413|emb|CAQ57799.1| hypothetical protein [Streptococcus phage PH15] Length = 249 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R+ G +Q++LG +GI+ + YEKG+ + ++ I F Sbjct: 10 IGEKIKQYRLENGWTQQELGSKIGISKNAIGNYEKGIRSPKKDTMFDLANAFGISIDDLF 69 >gi|239623932|ref|ZP_04666963.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239521963|gb|EEQ61829.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 242 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G RIR+ R ++ ++L + + + V KYE G + L I++VL Sbjct: 4 INEHIGGRIRMYRKARELTLQQLADLIHKSRASVSKYENGEITLDVETLSEIADVLMVSP 63 Query: 71 SFFFDVSPTV 80 D SP V Sbjct: 64 GQLMDFSPPV 73 >gi|288871456|ref|ZP_06117657.2| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288863406|gb|EFC95704.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 222 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+++G+ I+ +R L +SQE + E LG++ Q V K+E ++ A L ++ V + Sbjct: 21 IDMSLGENIKTKRNELKLSQEYVAEQLGVSRQAVSKWETDQSQPKAKNLTELATVFHVGL 80 Query: 71 SFFFDVSPTVCSDISSE 87 S + + E Sbjct: 81 SGLVEPQKYQAEQAAQE 97 >gi|284008034|emb|CBA74134.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 232 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R M+QE LG+ +G++ + ++E G L +++ L I + D Sbjct: 4 ERIRQARNHNKMTQESLGKRIGVSKATISQWESGTTEPNGKNLVSLAKALGVTIEWLLDG 63 Query: 77 SPTVCS 82 Sbjct: 64 DEKNAE 69 >gi|206900818|ref|YP_002250397.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] gi|206739921|gb|ACI18979.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] Length = 105 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 19/114 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVGKRIR R M E L E G++ + E+G+ L+ I++ P S+ Sbjct: 1 MNVGKRIRETRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAKAFNLPTSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 FF + + F+ T L D R+ II+L++S+ Sbjct: 61 FFSEDN---------DETIETFLRTKTSL----------DEDERRMIIQLIKSL 95 >gi|295402356|ref|ZP_06812311.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975629|gb|EFG51252.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 206 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 37/64 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I R + G+S E+LG +G+T + +++YE G R+ R+ I++ L+ + + Sbjct: 8 IGKNIEKYRKLKGISAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIADALDIDPADLY 67 Query: 75 DVSP 78 + + Sbjct: 68 EGTD 71 >gi|322388682|ref|ZP_08062281.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140471|gb|EFX35977.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 228 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 41/73 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LG+++Q +E+GV + +++ + +L+ +F ++ Sbjct: 5 EKLKARRKELKMTQKDIADQLGVSYQAYSAWERGVKQPSREKVKLLEHILKVSKGYFTEL 64 Query: 77 SPTVCSDISSEEN 89 + S+E+ Sbjct: 65 EIVRLYNTLSDED 77 >gi|315037492|ref|YP_004031060.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325955952|ref|YP_004286562.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|312275625|gb|ADQ58265.1| putative transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325332517|gb|ADZ06425.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 169 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 18/117 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R G+SQE L E + ++ Q V K+E + ++ +SE+ + Sbjct: 1 MKLGQKIAELRKKSGLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDY 60 Query: 73 F-------FDVSPTVCSDISSEENNVMDFISTP-----------DGLQLNRYFIQID 111 F++ + + + + D T + L L F+ I Sbjct: 61 LLKNGTPSFELPGKTTEEETKKLPKISDHEITQYLEVAKNAAHFESLALALIFLSIA 117 >gi|295107669|emb|CBL05212.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R GM+Q +L E +G+T V+ YE G+ V L+ I++ L ++ Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRTVKPELLESIADTLGVSVNA 60 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPDGLQLN 104 D D+ S E++ + S GL LN Sbjct: 61 LKDYGVETAGDLMSLLVRLEDSFGIAPASDGSGLTLN 97 >gi|299536270|ref|ZP_07049583.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] gi|298728256|gb|EFI68818.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] Length = 182 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +I+ R MSQ+ L + +T + K E G L I+E+ + P+++ Sbjct: 4 LEVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPMAW 63 Query: 73 F-----FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 F FD V E + + L N+ ++ Sbjct: 64 FVIQDQFDGISIVSKKERHETVETNELGYQYELLA-NKSYMS 104 >gi|332533845|ref|ZP_08409701.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] gi|332036776|gb|EGI73239.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] Length = 206 Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+RI+ RR+ LG++Q L E GI Q +QK E G + L+ +++ L+ F Sbjct: 1 MSVGERIKKRRVELGLTQANLAELAGIIQQSLQKIESGSTK-NPRNLKALADALDCTPEF 59 Query: 73 F-FDVSPTVCSDISSEEN 89 F ++ ++ S++S + Sbjct: 60 LQFGIAESINSNVSPGPD 77 >gi|18309709|ref|NP_561643.1| hypothetical protein CPE0727 [Clostridium perfringens str. 13] gi|18144386|dbj|BAB80433.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 268 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 ++++L R G+SQE L E LGI+ Q V K+E G + ++L +SE+ I + Sbjct: 5 EKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYLVKE 64 Query: 74 -FDVSPTVCSDISSEENNVMDFISTPDG 100 ++ + +I + + + + Sbjct: 65 TYEFEGSQEKEIGNTGKQYGENLGNKET 92 >gi|261404033|ref|YP_003240274.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280496|gb|ACX62467.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 272 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K I R ++QE L LG+TFQ V K+E G + L +S +L+ I F Sbjct: 7 KNINRYRKERRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKLFGY 66 Query: 77 SPTVCSDISSEENNVMDFISTPD---GLQLNRYFIQ----IDDVKVRQKIIEL 122 S T EE TP+ G + N Q I K R +++++ Sbjct: 67 SSTGKPISIYEEEYK-----TPEYYWGTEPNAACYQVLEMIPPTK-RVRLLDI 113 >gi|301066917|ref|YP_003788940.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|300439324|gb|ADK19090.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 344 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 38/59 (64%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ + IR RR+ LG++QE+L +G++ V K+EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVN 59 >gi|239629798|ref|ZP_04672829.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527410|gb|EEQ66411.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 344 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 38/59 (64%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ + IR RR+ LG++QE+L +G++ V K+EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVN 59 >gi|229192127|ref|ZP_04319095.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] gi|228591334|gb|EEK49185.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] Length = 118 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG ++ +++ P + F Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPTDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S NN+ + + Sbjct: 64 GKSDNSIK----SSNNIKEIFENDE 84 >gi|328479204|gb|EGF48603.1| XRE family transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 298 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 65/155 (41%), Gaps = 32/155 (20%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR +R+ G++QE L + +G+T V K+EKG++ + L ++ L + ++ Sbjct: 4 MHLNQIIRNKRLAAGLTQEALAQKVGVTAPAVSKWEKGISYPDITLLPILARNLNTDVNT 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG----LQLN----RYFIQIDD------------ 112 D S + + + DG + L R + + Sbjct: 64 LLDFSADLDPAALRRFYTKLTATAQKDGWKAAVALVDEELREYPSVPQLQMMVPSFLQGL 123 Query: 113 ---------VKVRQKIIELVRSIVSSEKKYRTIEE 138 VR++II+L ++ SE+ + ++ E Sbjct: 124 KSDIPTNEWPAVRERIIQLYQA---SERPHSSLPE 155 >gi|116495345|ref|YP_807079.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116105495|gb|ABJ70637.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 344 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 38/59 (64%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ + IR RR+ LG++QE+L +G++ V K+EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVN 59 >gi|227873147|ref|ZP_03991438.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227840978|gb|EEJ51317.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 300 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I +R LGM+Q++L E +G++ + V K+E+G+ S + +L I+ Sbjct: 4 VKIGKYISEKRKNLGMTQKQLAEKIGMSDKSVSKWERGICLPDVSLYFDLCSILGISINE 63 Query: 73 FFDVSPTVCSDIS-SEENNVMDFISTP 98 F V +I E N++ ++ Sbjct: 64 FLAGEDIVHENIEKKSEENIISVVTDS 90 >gi|261344508|ref|ZP_05972152.1| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282567418|gb|EFB72953.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 91 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 PV +G +I R G++ +L + +G++ QQ +YE+G+NR+ RL + Sbjct: 6 PVSKMIGSKITYYRKSNGITLNQLAKMIGVSQQQQSRYERGLNRINLDRLNQYAN 60 >gi|225575479|ref|ZP_03784089.1| hypothetical protein RUMHYD_03569 [Blautia hydrogenotrophica DSM 10507] gi|225037331|gb|EEG47577.1| hypothetical protein RUMHYD_03569 [Blautia hydrogenotrophica DSM 10507] Length = 123 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 35/74 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R I G+SQ LGE GI + KYE G +L I+ L I+ Sbjct: 1 MTVGEKIKTFRTIRGISQNMLGELAGIGGTTILKYELGSQNPKPDQLLKIANALGVSINV 60 Query: 73 FFDVSPTVCSDISS 86 D SD+ + Sbjct: 61 LTDFDIETASDVLT 74 >gi|218437353|ref|YP_002375682.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] gi|218170081|gb|ACK68814.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] Length = 377 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 12/118 (10%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + I+ R LG+SQ+ L + G++ Q + E G A+ +++ L + Sbjct: 4 DRELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVE 63 Query: 72 FFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKIIE 121 F D T+ + + L L + + I D R +II Sbjct: 64 DLFWLDNDETMIEAFPTSTVPIAQPFR----LTLAQVGSKLIAYPLIKDDAFRTEIIA 117 >gi|166033610|ref|ZP_02236439.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210608449|ref|ZP_03287825.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|317500066|ref|ZP_07958301.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] gi|166026795|gb|EDR45552.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210153068|gb|EEA84074.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|316898551|gb|EFV20587.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E V F+ T + L Sbjct: 68 -ELLSGEWKYVNQSEKEVCQFLRTEERL 94 >gi|75761153|ref|ZP_00741144.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904571|ref|ZP_04068647.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74491352|gb|EAO54577.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855052|gb|EEM99635.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 194 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N+GK I+ R G+S LGE +G++ Q + +YE G ++ L +I++ L P+ Sbjct: 4 NIGKVIKEIRKAKGISAFVLGEMIGVSQQAISQYENGKRKISFEVLNNIAKALNVPMD 61 >gi|253579257|ref|ZP_04856527.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849355|gb|EES77315.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 177 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 2 VGKKIRAFREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALGLNVSVFL 61 Query: 75 DVSPTVCSDISS 86 D + D+ S Sbjct: 62 DFNIETVGDVLS 73 >gi|37678457|ref|NP_933066.1| hypothetical protein VV0273 [Vibrio vulnificus YJ016] gi|37197197|dbj|BAC93037.1| hypothetical protein [Vibrio vulnificus YJ016] Length = 350 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+S + LGE +GI+ V+KYE + + L ++ L +FF Sbjct: 2 IGERIKRARAAAGLSMQALGEQVGISANMVKKYEHDQSMPSSGVLLKLATALSVRTEYFF 61 Query: 75 DVSPTVCSDIS 85 + ++ Sbjct: 62 RPAQVTLGEVE 72 >gi|220931033|ref|YP_002507941.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] gi|219992343|gb|ACL68946.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] Length = 182 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ N+GK++R R+ G S L E G++ + + E+G L ++ L Sbjct: 2 NEINANIGKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLNV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 P SFF + E + V F + + L Sbjct: 62 PFSFFIE----------EETSPVKVFSPSKEVL 84 >gi|56965066|ref|YP_176798.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911310|dbj|BAD65837.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 193 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 15/141 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK +R R GMS E L + +G++ + K E+G S + I+ L PI+ Sbjct: 17 KQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTLSVIWKIANGLHIPITA 76 Query: 73 F--FDVSPTVCSD------ISSEENNVMDFISTPDGL-QLNRYF----IQIDDVKVRQKI 119 F+ + SS++ +++ + GL + R + + + R + Sbjct: 77 LLSFEADVAIARANKAMKLSSSDDEFIVEPLFRSQGLMECYRGYLQPQCRYESEAHRLGV 136 Query: 120 IELVRSIVSSEKKYRTIEEEC 140 +E V + + +E E Sbjct: 137 VETVTVMAG--QLTIEVEGES 155 >gi|169335255|ref|ZP_02862448.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] gi|169257993|gb|EDS71959.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] Length = 143 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ R ++Q++LGE LG+ + YEKG +V A +SE+ + + Sbjct: 20 IGDRIKELRKENKLTQQELGEKLGVHSNTISMYEKGNRKVSAEMANKLSEIFNVSVGY 77 >gi|146300326|ref|YP_001194917.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154744|gb|ABQ05598.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 131 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 8/129 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ I R + M QE L + LGIT Q + E V RL I++ L+ + Sbjct: 8 KHIGRNISRIRELKDMKQEALADALGITQQTISNIENSET-VDEQRLIEIAKALDVSVEA 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + S +I +ST G + + K++EL +V +EK Sbjct: 67 IKNFSEEAVFNIIGNTIQDHGTLSTTTG-----NYNCTFNPL--DKVVELYERLVQAEKD 119 Query: 133 YRTIEEECM 141 E+ + Sbjct: 120 KVEYLEKLL 128 >gi|262276707|ref|ZP_06054501.1| transcriptional regulator, Cro/CI family [alpha proteobacterium HIMB114] gi|262225129|gb|EEY75587.1| transcriptional regulator, Cro/CI family [alpha proteobacterium HIMB114] Length = 104 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 +SQ ++G+ + TFQQ+QKYEKG N++ AS++ +SE P+S +F +I E Sbjct: 36 ISQTQVGKYMNCTFQQIQKYEKGKNQLSASKIYKLSEFFNIPVSSWFTPIEDFYKEIRDE 95 >gi|322376841|ref|ZP_08051334.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321282648|gb|EFX59655.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 288 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 3/99 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L MSQ +L E GI Q Q+ + E G GA L +S+ L+ I +FF+ Sbjct: 8 RLKNRRKELKMSQRELAE--GICKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFFNE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D SE + T + +Y +++ VKV Sbjct: 66 QIVEEIDELSEFKKLAQTFITNRNYESLKYIYELESVKV 104 >gi|226328630|ref|ZP_03804148.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] gi|225203363|gb|EEG85717.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] Length = 97 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 NKK + VGK+IR R + M+ ++LG LGI+ Q +YE G + A L Sbjct: 5 AMNKK----ISKLVGKKIRSLREMYCMTGDELGALLGISQQHQSRYENGETNIHAETLYC 60 Query: 62 ISEVLESPISFF 73 +S + +F Sbjct: 61 LSYFFDVEPEYF 72 >gi|261885710|ref|ZP_06009749.1| hypothetical protein CfetvA_11544 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 207 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 35/62 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R G+SQ++ + GI + +Q YE G+ + ++ +++ + +++F+ Sbjct: 2 IGNKIRALREENGISQKEFAKEFGIAYGTLQSYEYGLTKPKTDFIEQLAKKFKIDVNYFY 61 Query: 75 DV 76 D Sbjct: 62 DD 63 >gi|168209895|ref|ZP_02635520.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|170711951|gb|EDT24133.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] Length = 268 Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 ++++L R G+SQE L E LGI+ Q V K+E G + ++L +SE+ I + Sbjct: 5 EKLQLIRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYLVKE 64 Query: 74 -FDVSPTVCSDISSEENNVMDFISTPDG 100 ++ + +IS+ + + + Sbjct: 65 TYEFEGSQEKEISNTGKQYGENLENKET 92 >gi|325696215|gb|EGD38106.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 180 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G+SQ+ L + +G++++ +Q +E GVN++ + Q ++ + + Sbjct: 2 NRIKEIRQKEGLSQQALAKKIGVSYRTIQNWENGVNQIKPDKAQQLANFFRVGVGYLLGY 61 Query: 77 SPTVCS 82 + Sbjct: 62 NDEEKE 67 >gi|210608450|ref|ZP_03287826.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] gi|210153061|gb|EEA84067.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] Length = 157 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E V F+ T + L Sbjct: 68 -ELLSGEWKYVNQSEKEVCQFLRTEERL 94 >gi|153954474|ref|YP_001395239.1| phage transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347355|gb|EDK33891.1| Predicted phage transcriptional regulator [Clostridium kluyveri DSM 555] Length = 268 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I+ R G++Q++L + + +T +Q YE + L I++VL I+ Sbjct: 1 MNIGENIKRIRTQKGLTQKELAKSIHVTPTTIQNYENNRRKPSVDTLDKIAKVLGVTINS 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|152999279|ref|YP_001364960.1| putative phage repressor [Shewanella baltica OS185] gi|151363897|gb|ABS06897.1| putative phage repressor [Shewanella baltica OS185] Length = 240 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 40/75 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR +R LG++Q+ LG +G++ V ++EK + L +++ L+ +S+ Sbjct: 11 KTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSW 70 Query: 73 FFDVSPTVCSDISSE 87 + + ++E Sbjct: 71 LLNGQIATKPESNAE 85 >gi|110347043|ref|YP_665861.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283154|gb|ABG61214.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 154 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFF 73 +G+ +R +R +++E+L +G++ Q +YEK ++++ +RL H+ E+L+ P+ Sbjct: 48 LGRALRAKRSERKLTREQLATMIGLSTQVFGRYEKAISKMNVTRLIHLCEILDVSPVDLI 107 Query: 74 FDVSPTVCSDISSEEN 89 ++ +P + D E Sbjct: 108 YEAAPHLFGDTPQEAK 123 >gi|332716566|ref|YP_004444032.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063251|gb|ADY66941.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 225 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L G++ + K E G + LQ +S+ L Sbjct: 31 NNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLTTLQTLSKALGV 90 Query: 69 PISFFFDVSPTVCSDI 84 PI+ FF S Sbjct: 91 PITAFFRGFEEPRSAT 106 >gi|225388149|ref|ZP_03757873.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] gi|225045810|gb|EEG56056.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] Length = 179 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 35/97 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G+SQE L E L ++ Q V K+E+G L +S L + Sbjct: 7 LRQIRKEKGLSQEDLAELLDVSRQAVSKWEQGAGYPEVETLLLLSNRLNISLDSLMATEI 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 E I++P + + I K+ Sbjct: 67 AREGGGGRAEVTGTILITSPHENVVVSCYKVISSQKM 103 >gi|169349646|ref|ZP_02866584.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] gi|169293721|gb|EDS75854.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] Length = 211 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E V F+ T + L Sbjct: 68 -ELLSGEWKYVNQSEKEVCQFLRTEERL 94 >gi|309792582|ref|ZP_07687044.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] gi|308225396|gb|EFO79162.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] Length = 206 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 3 GNKKIPNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + P+P D ++VG R+R R +S L E G+ + E G S LQ Sbjct: 18 EARDCPSPQDGKVDVGARLRFLREGRQLSIRALAEASGLAVNTLSLIENGKTSPSVSTLQ 77 Query: 61 HISEVLESPISFFFDVSPT 79 ++ L PI+ FF+ Sbjct: 78 QVAVALGVPITSFFEPDSP 96 >gi|326201072|ref|ZP_08190944.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988640|gb|EGD49464.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 213 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE+L + LG++ Q V K+E G + ++ +SE + + Sbjct: 1 MNISDRIQSLRKTKGISQEQLADELGVSRQAVSKWESGQSMPDIEKIILMSEYFKITTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + D + ++ + F + Sbjct: 61 LLKG-IDLPKDTTEKKPSAAIFAA 83 >gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1] Length = 322 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R GMSQE+L E LG++ Q V K+E + +R+ IS++ + + Sbjct: 6 KLIELRKKSGMSQEELAEKLGVSRQSVSKWEGAQSTPDLNRILEISKIFDVSTDYLLKDE 65 Query: 78 PTVCSDISSEE 88 +IS + Sbjct: 66 IEAGKEISEKS 76 >gi|159186071|ref|NP_356428.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141205|gb|AAK89213.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 208 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L G++ + K E G + LQ +S+ L Sbjct: 14 NNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLTTLQTLSKALGV 73 Query: 69 PISFFFDVSPTVCSDI 84 PI+ FF S Sbjct: 74 PITAFFRGFEEPRSAT 89 >gi|116512822|ref|YP_811729.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108476|gb|ABJ73616.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 175 Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R ++Q+ L + +G+ + YE+G L ++ L I Sbjct: 6 INKFVGMKIKEFRKNKKLTQQGLADLVGVKNSAISNYEQGTRIPKRDFLFRVANALGVSI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQK 118 FF + S SE N + + P + LN Q+++ + ++ Sbjct: 66 DEFFPIQNEETSSTLSEINKISSQLEEPRQKIVLNTASSQLEEQEKAKR 114 >gi|168187848|ref|ZP_02622483.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] gi|169294305|gb|EDS76438.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] Length = 155 Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R + ++QE+L L I+ + KYE+ + L I++ L+ ++ Sbjct: 1 MNLGEKIKKYRKLFKLTQEELAAKLEISKHTLSKYEQNQRKPNIEMLNKIAKALDVTVND 60 Query: 73 FFDVSPTVCSDISSEENN 90 + S EE Sbjct: 61 LMEFEELKKEVTSIEETE 78 >gi|297582579|ref|YP_003698359.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141036|gb|ADH97793.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 210 Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I RR L +SQ + E +G++ Q V K+E G + + L ++EVL + Sbjct: 1 MALGTTISQRRKELNLSQAFVAEEMGVSRQAVSKWETGQSVPSTAHLIRLAEVLGCDVQD 60 Query: 73 FFDVSPTVCSDISSEEN 89 + +EE+ Sbjct: 61 LAEPDQEAQPAQPAEES 77 >gi|288947737|ref|YP_003445120.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898253|gb|ADC64088.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 273 Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 17/127 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ ++G RIR RR LG+S KL E + I+ + YE G+ R G + +S + E Sbjct: 157 LNRSIGARIRTRRKQLGLSLRKLSERIDGAISSVALNNYEIGLRRPGIEEVMQLSAIFEV 216 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ + D +L R+F + D + R I +L ++ S Sbjct: 217 SPAWLLCIDDRPPPD--------------EHERELIRHFRR-TDERGRGLIFQLSAALAS 261 Query: 129 SEKKYRT 135 + ++ + Sbjct: 262 NTREQTS 268 >gi|188025844|ref|ZP_02960023.2| hypothetical protein PROSTU_01924 [Providencia stuartii ATCC 25827] gi|188020707|gb|EDU58747.1| hypothetical protein PROSTU_01924 [Providencia stuartii ATCC 25827] Length = 116 Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHI 62 N K N + VG ++ R+ G++ +L + GI + QQ+ +YE+G+NR+G L Sbjct: 9 NMKSTNSISKLVGFHLKKLRIQSGLTAFQLAKQAGIKSEQQLYRYERGINRIGIDELISS 68 Query: 63 SEVLESPISFFFDV 76 +VL+ I FF++ Sbjct: 69 LQVLDIDIGEFFEL 82 >gi|325677861|ref|ZP_08157503.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110415|gb|EGC04589.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 180 Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ IR R GM+QE L E +G++ Q V K+E G +L +S +L Sbjct: 1 MDIGENIRNARKKKGMTQEMLAEKMGVSRQAVSKWESGKGMPETEKLAELSALLGVSADR 60 Query: 73 FFDVSPTVCS 82 + P Sbjct: 61 LIGIRPQEEQ 70 >gi|299820781|ref|ZP_07052670.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|299817802|gb|EFI85037.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] Length = 111 Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 5/111 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G +IR R G SQEKL + L + Q V +YE G + L ++++ + Sbjct: 3 LNKYIGNKIRFFREENGYSQEKLAQLLRTSRQTVSRYENGDRKASQDVLYELAQLFGKSM 62 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 FF ++ P + ++ + D T + L+ +I++ R K Sbjct: 63 DDFFPPREIDPPNKNGLTIAAHIDDDV--TEEELRDILAYIEMKKRLHRGK 111 >gi|27381826|ref|NP_773355.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354995|dbj|BAC51980.1| blr6715 [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%) Query: 3 GNKKIP-----NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 G K P + VD +G+ +RL R G+S + + G++ + + E+ Sbjct: 9 GPKDAPTIETDDAVDQRLGETVRLLRQRAGLSIQDVANKTGLSNGMISQLERARAMPSIR 68 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 L+ +S L+ PIS+FF+ +++ +V +I + +L R Sbjct: 69 TLRLLSIALDVPISYFFE---------TTDPGDVQRYIVRKNSRRLLR 107 >gi|88858936|ref|ZP_01133577.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819162|gb|EAR28976.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 119 Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 24/122 (19%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++R R+ +SQ+ L + L I+ Q +Q +E+G N +R+ ++E+L P+ + Sbjct: 11 KLRKARLEKDLSQQNLADHLKISVQSIQHWERGANTPKLARMNQLAEILSVPVEYLM--- 67 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 I S E + + Q+ + F +LV +K TIE Sbjct: 68 ------IQSNETENVQHTAGKKIPQILKAFAA-----------DLVNC----DKSDETIE 106 Query: 138 EE 139 + Sbjct: 107 QL 108 >gi|318057356|ref|ZP_07976079.1| hypothetical protein SSA3_05416 [Streptomyces sp. SA3_actG] gi|318075878|ref|ZP_07983210.1| hypothetical protein SSA3_03995 [Streptomyces sp. SA3_actF] Length = 388 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 36/68 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R + G+++ ++ + +G++ V +YE G NR + +++VL+ PI FF Sbjct: 29 RLTQARRLAGLTKREVADGIGVSAAAVGQYEAGTNRPRPELIPRLADVLDVPIQFFVAGR 88 Query: 78 PTVCSDIS 85 P D S Sbjct: 89 PMGKVDSS 96 >gi|329930359|ref|ZP_08283948.1| methyltransferase domain protein [Paenibacillus sp. HGF5] gi|328935085|gb|EGG31571.1| methyltransferase domain protein [Paenibacillus sp. HGF5] Length = 272 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K I R ++QE L LG+TFQ V K+E G + L +S +L+ I F Sbjct: 7 KNINRYRKEQRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKLFGY 66 Query: 77 SPTVCSDISSEENNVMDFISTPD---GLQLNRYFIQ----IDDVKVRQKIIEL 122 S T EE TP+ G + N Q I K R +++++ Sbjct: 67 SSTGKPISIYEEEYK-----TPEYYWGTEPNAACYQVLEMIPPTK-RVRLLDI 113 >gi|154496775|ref|ZP_02035471.1| hypothetical protein BACCAP_01068 [Bacteroides capillosus ATCC 29799] gi|150274027|gb|EDN01127.1| hypothetical protein BACCAP_01068 [Bacteroides capillosus ATCC 29799] Length = 348 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE L + L I+ Q V K+E G + L I+ I F Sbjct: 5 LGNKIKQLRLQKSVTQETLAKTLHISCQTVSKWENGTSMPDILLLPEIAVYFGCTIDDLF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 D+S + + + +ST + Q F++ Sbjct: 65 DLSEQARFERIEHMLEMQEALSTEEFRQ-TEAFLK 98 >gi|167036463|ref|YP_001664041.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114889|ref|YP_004185048.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855297|gb|ABY93705.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927980|gb|ADV78665.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 129 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R G++Q++L LGI+ + V YE G LQ I++ + Sbjct: 2 LGKRIKELRKKKGITQKELASYLGISDRAVGYYESGQRTPPPDILQKIADFFNVSTDYLL 61 Query: 75 D-----VSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQID--DVKVRQKIIELVRSI 126 ++ ++ +++F + L F Q K ++II ++++I Sbjct: 62 GRTNIYNPADEITEAVFDDPELLEFWRELKEREDLKLLFKQTKKLSPKDIKQIIRIIKAI 121 Query: 127 VSSEKKYR 134 E K Sbjct: 122 EDEEDKGE 129 >gi|138893994|ref|YP_001124447.1| hypothetical protein GTNG_0320 [Geobacillus thermodenitrificans NG80-2] gi|196250338|ref|ZP_03149031.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134265507|gb|ABO65702.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196210227|gb|EDY04993.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 260 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+++ R G+SQE L E L T Q + K+E G +L I+ + E I + Sbjct: 1 MNFGEKLVKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLLMIANIFEVSIDY 60 Query: 73 FFDVSPTVCSD 83 S D Sbjct: 61 LLKESAENNDD 71 >gi|240144293|ref|ZP_04742894.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203709|gb|EEV01994.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 111 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 5/96 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ +G+SQ+ L + L ++ Q + KYE N L+ ++++ + + + Sbjct: 2 NRLKDLRLKMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYL--- 58 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S + + V + D L + + I+ Sbjct: 59 --IGYSSCAHKVEEVSETALNEDELAFLKKYRSINP 92 >gi|172041518|ref|YP_001801232.1| HTH family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852822|emb|CAQ05798.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium urealyticum DSM 7109] Length = 514 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 17/144 (11%) Query: 2 VGNKKIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + + P+ + VG R+R R +SQ +L LG++ V + E + + LQ Sbjct: 21 SQSPRTPDETNRNFVGSRLRQLRKERDISQAQLATTLGLSASYVNQIEHDQRPLTLAVLQ 80 Query: 61 HISEVLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 I+ +FF + D+ ++ + + + +L R+ I Sbjct: 81 KITRAFGVDATFFANEDSLRLLAEVQDVMADRDIWPTPVDVTELAELVRHHPAI------ 134 Query: 117 QKIIELVRSIVSSEKKYRTIEEEC 140 R++V +YR + ++ Sbjct: 135 ------ARAMVDMHSRYRNVSDKL 152 >gi|213019902|ref|ZP_03335694.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994511|gb|EEB55167.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 243 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 13/126 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L I Sbjct: 100 QIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDL 159 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSEKK 132 +++ + +E N L + +I+ ++R +I+ L SI E+K Sbjct: 160 LELTEDADDKVENELPN------------LIEEYKEIESQELRYALIKFLFESIQICEEK 207 Query: 133 YRTIEE 138 + +E+ Sbjct: 208 VKRVEK 213 >gi|291540195|emb|CBL13306.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 107 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R + M+Q++L + GI ++KYE G +LQ I+E L ++ F Sbjct: 7 IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGISVTVFL 66 Query: 75 DVSPTVCSDISS 86 D SD+ S Sbjct: 67 DYDINTISDVLS 78 >gi|255067367|ref|ZP_05319222.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC 29256] gi|255048337|gb|EET43801.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC 29256] Length = 218 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+RIR +R +Q++L + L I+ + ++E + A L +S+VL Sbjct: 1 MNKTIGQRIRQKRKEFKWTQQELAKKLKDISHVAISQWESNTTKPNAENLYELSQVLGCD 60 Query: 70 ISFFFDVSPTVCS 82 + + + Sbjct: 61 LGWLLKGEGEDTN 73 >gi|325695610|gb|EGD37510.1| transcriptional regulator [Streptococcus sanguinis SK150] Length = 228 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 53/120 (44%), Gaps = 26/120 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + L I++Q +E+GV +++ + ++L P +F + Sbjct: 5 EKLKARRKELKLTQKDIADKLRISYQAYSAWERGVKEPSTEKVRLLEKLLNVPKGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + +++++ R +V+ E+ + + Sbjct: 64 ------------------------IEIVRLYNTL-SPNGKEQVVSYARDLVTEEQNKKVL 98 >gi|332686910|ref|YP_004456684.1| repressor protein [Melissococcus plutonius ATCC 35311] gi|332370919|dbj|BAK21875.1| repressor protein [Melissococcus plutonius ATCC 35311] Length = 239 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G +I+ R ++QE L + L T Q + +YE G + L +SE+ E Sbjct: 3 DLSKFIGNKIKEYRERRNLTQEDLADMLNTTRQSISRYETGERKANQDMLFKLSEIYEIS 62 Query: 70 ISFFF 74 I+ FF Sbjct: 63 INDFF 67 >gi|291537380|emb|CBL10492.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 110 Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 22/121 (18%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D +G RI+ R + ++QE L E + ++ + + EKG+ + + L +S VL Sbjct: 2 NPID--LGVRIKQCRTMRKLTQENLAERIDVSSHYIYEIEKGLKNMSLNTLIDLSTVLNV 59 Query: 69 PISF--FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVR 124 + F S T C+D ++N L L I D + R + +++ Sbjct: 60 STDYLLFGTTSDTPCTDTIPQDN-----------LALL-----IKDLSPQKRDSLADIIS 103 Query: 125 S 125 + Sbjct: 104 A 104 >gi|330719160|ref|ZP_08313760.1| transcription regulator [Leuconostoc fallax KCTC 3537] Length = 134 Score = 67.1 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ +I+ R+ ++Q++L + + ++ Q V K+E G N + +SE L I Sbjct: 1 MHISNKIKQLRIENHLTQDQLAQKINVSRQSVLKWEAGTNYPNIENILALSEALNVSID 59 >gi|307126198|ref|YP_003878229.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|306483260|gb|ADM90129.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|321157139|emb|CBW39125.1| Putative phage repressor protein [Streptococcus phage 23782] gi|321157188|emb|CBW39173.1| Putative phage repressor protein [Streptococcus phage 11865] Length = 244 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +NVG+RI+ RR L MS ++L E +G++ + +YEKG + +VG L+ I++ L Sbjct: 1 MNVGERIKQRRKALKMSADELAESVGVSRSTIFRYEKGDIEKVGPEVLKKIADKLNVSPG 60 Query: 72 FFF 74 Sbjct: 61 DLM 63 >gi|297242658|ref|ZP_06926596.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] gi|296888869|gb|EFH27603.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] Length = 214 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G++IR R+ G++QE+L E L ++ V K+E L+ I+ L + + Sbjct: 5 ISLGEKIRKARLEAGLTQEELSELLMVSRAAVAKWETNRGLPDIENLKFIASALSVSVDY 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 D ENN +DF T + LN+Y Sbjct: 65 LLD------------ENNSVDFSITKKPINLNKY 86 >gi|291540762|emb|CBL13873.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 111 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +G+SQ+ L + L ++ Q + KYE N L+ ++++ + + + Sbjct: 2 NRLKDLRREMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYL--- 58 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S + + V + D L + + I+ Sbjct: 59 --IGYSSYAHKVEEVSETALNEDELSFLKKYRSINP 92 >gi|126650379|ref|ZP_01722607.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] gi|126593029|gb|EAZ87011.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] Length = 182 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +I+ R MSQ+ L + +T + K E G L I+E+ + P+++ Sbjct: 4 LEVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPMAW 63 Query: 73 F 73 F Sbjct: 64 F 64 >gi|260892586|ref|YP_003238683.1| helix-turn-helix domain protein [Ammonifex degensii KC4] gi|260864727|gb|ACX51833.1| helix-turn-helix domain protein [Ammonifex degensii KC4] Length = 349 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ R+ G+S L E +G++ Q + KYE+G++ G+ L ++E L + Sbjct: 9 RQIGLRIKEARLSRGLSLRALAEKVGVSAQAISKYERGLDIPGSGVLLRLAEALGVKWEY 68 Query: 73 F 73 F Sbjct: 69 F 69 >gi|853809|emb|CAA60798.1| unnamed protein product [Clostridium perfringens] Length = 265 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 ++++L R G+SQE L E LGI+ Q V K+E G + ++L +SE+ I + Sbjct: 5 EKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYLVKE 64 Query: 74 -FDVSPTVCSDISSEENNVMDFISTPDG 100 ++ + +IS+ + + + Sbjct: 65 TYEFEGSQEKEISNTGKQYGENLENKET 92 >gi|15894856|ref|NP_348205.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024531|gb|AAK79545.1|AE007667_10 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508994|gb|ADZ20630.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 110 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +QE L E L ++ V K E G ++ L I + L S+ Sbjct: 8 IGDRIRNSRKSKNYTQENLAEYLDVSTVYVSKIECGKTKINLETLMKICKFLNITPSYIL 67 Query: 75 DVSPTVCSDISSEENNVMDFIST--PDGLQLNRYFIQI 110 S T + ++N + D + T P+ ++L I++ Sbjct: 68 TGSTTDSENY--QKNEITDMLKTCPPEKIKLISSMIKL 103 >gi|218515232|ref|ZP_03512072.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 238 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 45 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 104 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF + + F+ +G++L R Sbjct: 105 PLTAFFRRYEEPRNAV---------FVKAGEGVELER 132 >gi|66395390|ref|YP_239683.1| ORF020 [Staphylococcus phage 53] gi|62635740|gb|AAX90851.1| ORF020 [Staphylococcus phage 53] Length = 239 Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISS 86 F +DI+S Sbjct: 68 LFPTRNNKKNDITS 81 >gi|300722701|ref|YP_003711991.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] gi|297629208|emb|CBJ89805.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] Length = 123 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 KR+ R LG+SQ +LGE LG + + +YE+G+N S + I+ +L+ P Sbjct: 4 KRLSESRKALGLSQRELGEKLGLYDEDVAKATISRYERGLNAPAYSTVCQIANILKVPPC 63 Query: 72 FFFDVSPTVCSDI 84 +F+ + Sbjct: 64 YFYIDDDIFAEQV 76 >gi|218135227|ref|ZP_03464031.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] gi|217990612|gb|EEC56623.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] Length = 167 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R + M+Q++L + GI ++KYE G +LQ I+E L ++ F Sbjct: 7 IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGISVTVFL 66 Query: 75 DVSPTVCSDISS 86 D SD+ S Sbjct: 67 DYDINTISDVLS 78 >gi|218508625|ref|ZP_03506503.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 225 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 91 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF + + F+ +G++L R Sbjct: 92 PLTAFFRRYEEPRNAV---------FVKAGEGVELER 119 >gi|325680803|ref|ZP_08160341.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107583|gb|EGC01861.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 217 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+G ++ +D I +GK I R M+Q +L E LGI+ + V K+E G AS + Sbjct: 6 MIGTERRIRRMDQIMIGKFIAACRKEKKMTQAQLAEKLGISDRAVSKWETGKCMPDASLM 65 Query: 60 QHISEVLESPISFFFDV 76 + E L I+ F+ Sbjct: 66 PELCEQLGISINDLFNG 82 >gi|66395312|ref|YP_239602.1| ORF019 [Staphylococcus phage 69] gi|66396425|ref|YP_240780.1| ORF019 [Staphylococcus phage 92] gi|151221206|ref|YP_001332028.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257433183|ref|ZP_05609541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|296277282|ref|ZP_06859789.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus MR1] gi|62635663|gb|AAX90774.1| ORF019 [Staphylococcus phage 69] gi|62636839|gb|AAX91950.1| ORF019 [Staphylococcus phage 92] gi|104641720|gb|ABF73098.1| cI-like repressor [Staphylococcus aureus phage phiNM2] gi|150374006|dbj|BAF67266.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257281276|gb|EEV11413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] Length = 239 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISS 86 F +DI+S Sbjct: 68 LFPTRNNKKNDITS 81 >gi|310828390|ref|YP_003960747.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308740124|gb|ADO37784.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 178 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++ +SQ L + L + + VQKYE G + + + I++VL++ ++ Sbjct: 7 IGARIKESRKLMKLSQTDLADALNKSLRTVQKYESGEIELNIATINEIAKVLKTSPAYL 65 >gi|282882172|ref|ZP_06290811.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|281297937|gb|EFA90394.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] Length = 235 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 38/67 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R++ ++ ++L E LG++ +QKYE G +Q IS++L PI+ Sbjct: 1 MTLGEKIRKYRILNNLTMKELSEKLGMSISAIQKYENGTVIPKTDIIQKISKILNVPINK 60 Query: 73 FFDVSPT 79 + + Sbjct: 61 LLEETSA 67 >gi|288561750|ref|YP_003429156.1| transcriptional regulator XRE [Bacillus pseudofirmus OF4] gi|288548382|gb|ADC52264.1| transcriptional regulator, XRE [Bacillus pseudofirmus OF4] Length = 292 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R G+SQ +L + + T + EKG N V A L I+E L I++FF Sbjct: 6 IGKNIKDLREYYGISQRELAKGI-CTQPTISNIEKGENFVAAQLLHMIAERLGVDINYFF 64 Query: 75 DVSPTVCSDISSE 87 +++ T D +E Sbjct: 65 NIAETPKIDYMNE 77 >gi|257785038|ref|YP_003180255.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473545|gb|ACV51664.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 235 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R+ +QE+L + L ++ Q V K+E +N S L ++ L + Sbjct: 8 LGRRIARLRLAKTATQERLAKELNVSPQAVSKWESDINYPDISLLPDLARFLGVSVDELL 67 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + + + + + +S Sbjct: 68 SGASAFAQESVAAQEGTAEVVS 89 >gi|229826230|ref|ZP_04452299.1| hypothetical protein GCWU000182_01602 [Abiotrophia defectiva ATCC 49176] gi|229789100|gb|EEP25214.1| hypothetical protein GCWU000182_01602 [Abiotrophia defectiva ATCC 49176] Length = 243 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ +G I+ R ++Q +L + + + + KYEKG + + L I++VL+ Sbjct: 2 NNIESVLGNSIKKCRTNRHLTQMELAKLINKSNTTLAKYEKGEISIDVATLVEIAKVLQV 61 Query: 69 PISFFFDVSPTVCSDISSEENN--VMDFISTP 98 P+ +F + + +++ + F S+ Sbjct: 62 PLEYFIEAIKEKSEKTAPPQSDSIIPVFFSSK 93 >gi|29028568|ref|NP_803258.1| cI-like repressor [Staphylococcus phage 11] gi|57651248|ref|YP_185213.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|66395526|ref|YP_239894.1| ORF018 [Staphylococcus phage 42E] gi|88195767|ref|YP_500576.1| phage repressor protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|18920492|gb|AAL82233.1| cI-like repressor [Staphylococcus phage 11] gi|57285434|gb|AAW37528.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|62636019|gb|AAX91130.1| ORF018 [Staphylococcus phage 42E] gi|87203325|gb|ABD31135.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|315193399|gb|EFU23796.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus CGS00] Length = 239 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISS 86 F +DI+S Sbjct: 68 LFPTRNNKKNDITS 81 >gi|213019843|ref|ZP_03335645.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994591|gb|EEB55237.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +GK+I R++ G +Q KL +G+T +++ +E G + I+ L Sbjct: 23 SVSYELGKKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIAGALSVN 82 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + PTV + S E+ + + L + +I D ++R+K+ LVR + S Sbjct: 83 VIDLLPG-PTVLRENSWYEDE------DKEIVYLTKIHREIKDQELRKKLYPLVRFVYIS 135 Query: 130 EK 131 EK Sbjct: 136 EK 137 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 9/110 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + + VGKRI+ +R+I +QE L +G T +++ YE+G + L Sbjct: 175 IEKEICTDSILYKVGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDIPIEILYK 234 Query: 62 ISEVLESPISFF----FDVSPTVCSDISSEENNVMDFIST-----PDGLQ 102 I++ L I ++ P E+ + + T +G+Q Sbjct: 235 IAKTLSVNIKALGLTEYENEPVFGFIGKCEKIEDQELLDTVARSLSEGMQ 284 >gi|313898798|ref|ZP_07832332.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956380|gb|EFR38014.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 5 FLGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPN-- 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ I+ E V F+ T + L Sbjct: 63 -ELLSGEWKYINQAEKEVCQFLRTEERL 89 >gi|153810274|ref|ZP_01962942.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] gi|149833453|gb|EDM88534.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] Length = 124 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + ++IR R G+SQE L E GI ++KYE G+ + +L+ I++ LE + Sbjct: 26 DMEINEKIRYFRKQRGLSQELLAERTGINVNTIRKYEIGIRKPKVEQLKKIADGLEISVI 85 Query: 72 FFFDVSPTVCSDISSEENNVMDFI 95 F D+ +D+ + + F Sbjct: 86 EFLDIEIENEADLIAMLKKISPFF 109 >gi|213019782|ref|ZP_03335585.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994612|gb|EEB55257.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +GK+I R++ G +Q KL +G+T +++ +E G + I+ L Sbjct: 23 SVSYELGKKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIAGALSVN 82 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + PTV + S E+ + + L + +I D ++R+K+ LVR + S Sbjct: 83 VIDLLPG-PTVLRENSWYEDE------DKEIVYLTKIHREIKDQELRKKLYPLVRFVYIS 135 Query: 130 EK 131 EK Sbjct: 136 EK 137 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 9/110 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + + VGKRI+ +R+I +QE L +G T +++ YE+G + L Sbjct: 175 IEKEICTDSILYKVGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDIPIEILYK 234 Query: 62 ISEVLESPISFF----FDVSPTVCSDISSEENNVMDFIST-----PDGLQ 102 I++ L I ++ P E+ + + T +G+Q Sbjct: 235 IAKTLSVNIKALGLTEYENEPVFGFIGKCEKIEDQELLDTVARSLSEGMQ 284 >gi|160873890|ref|YP_001553206.1| putative phage repressor [Shewanella baltica OS195] gi|160859412|gb|ABX47946.1| putative phage repressor [Shewanella baltica OS195] Length = 240 Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 40/75 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR +R LG++Q+ LG +G++ V ++EK + L +++ L+ +S+ Sbjct: 11 KTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSW 70 Query: 73 FFDVSPTVCSDISSE 87 + + ++E Sbjct: 71 LLNGQVAAKPESNAE 85 >gi|223984327|ref|ZP_03634469.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] gi|223963684|gb|EEF68054.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] Length = 647 Score = 66.8 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 11/102 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ RR G +QE+L + ++ Q V K+E G + +L+ ++ + Sbjct: 5 ENIQRRRKAAGWTQEQLAQKCAVSRQAVSKWEAGQSVPSLDKLRQLANCFGISVDELVQD 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 P + + +P ++L++ + R+ Sbjct: 65 DPAAEPADAHQ-------TGSPSLVELDQA----RQTRQRRH 95 >gi|323693266|ref|ZP_08107484.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502749|gb|EGB18593.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ V+ + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVSEPDLNTLKKICYLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|315648384|ref|ZP_07901483.1| putative transcriptional regulator [Paenibacillus vortex V453] gi|315276078|gb|EFU39424.1| putative transcriptional regulator [Paenibacillus vortex V453] Length = 420 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G I R LGM+QE+L LG+++Q V K+E G + +++V + I F Sbjct: 9 GNNIVRLRKQLGMTQEQLANGLGVSYQAVSKWENGQTCPDIIHIPLLADVFGTTIDEIF 67 >gi|327191632|gb|EGE58643.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 225 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 91 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF + + F+ +G++L R Sbjct: 92 PLTAFFRRYEEPRNAV---------FVKAGEGVELER 119 >gi|282599891|ref|ZP_05972255.2| transcriptional regulator [Providencia rustigianii DSM 4541] gi|282567526|gb|EFB73061.1| transcriptional regulator [Providencia rustigianii DSM 4541] Length = 96 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+K P + VG++++ R G + +L I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNRKFP--IAYAVGQKVKSLRKSQGYTVFQLARECNISEQQLFRYERGVNRIDIDCLA 58 Query: 61 HISEVLESPISFFF 74 +S++L IS F Sbjct: 59 RVSKILNVNISDIF 72 >gi|317490116|ref|ZP_07948605.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325833610|ref|ZP_08166059.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316910821|gb|EFV32441.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325485534|gb|EGC88003.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 380 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 39/80 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + +R+ RR G+SQE L LG++ Q V K+E+ + L ++++ + Sbjct: 1 MNVEIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSL 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 V + D++ E + Sbjct: 61 DDLLYVDEEIRDDVTFEAAD 80 >gi|282909328|ref|ZP_06317144.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958772|ref|ZP_06376218.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] gi|282326896|gb|EFB57193.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789812|gb|EFC28634.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 239 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISS 86 F +DI+S Sbjct: 68 LFPTRNNKKNDITS 81 >gi|257792196|ref|YP_003182802.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476093|gb|ACV56413.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 380 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 39/80 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + +R+ RR G+SQE L LG++ Q V K+E+ + L ++++ + Sbjct: 1 MNVEIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSL 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 V + D++ E + Sbjct: 61 DDLLYVDEEIRDDVTFEAAD 80 >gi|295098436|emb|CBK87526.1| Helix-turn-helix [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 102 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 4/81 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQH 61 K NP + +R++ R+ + +SQ+ LG GI ++ +YEKGV++ ++H Sbjct: 2 KTSNPHNQLFSRRLKEVRLDMALSQKSLGILAGIDEFAASARINRYEKGVHQASIEVVRH 61 Query: 62 ISEVLESPISFFFDVSPTVCS 82 +++VLE P+++F+ + S Sbjct: 62 LAKVLEVPVAYFYTEDDELAS 82 >gi|190895653|ref|YP_001985945.1| transcriptional regulator [Rhizobium etli CIAT 652] gi|190699598|gb|ACE93682.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 231 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF + + F+ +G++L R Sbjct: 94 PLTAFFRRYEEPRNAV---------FVKAGEGVELER 121 >gi|170722756|ref|YP_001750444.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760759|gb|ACA74075.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 76 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 8 PNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+P + G RIR R+ +GMSQE + G + + E G + ++ +++ L Sbjct: 6 PSPALQHQFGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGANPSINAIKVLADAL 65 Query: 67 ESPISFFFDVS 77 IS F+ Sbjct: 66 GVSISALFEGM 76 >gi|319936228|ref|ZP_08010648.1| HTH domain-containing protein [Coprobacillus sp. 29_1] gi|319808802|gb|EFW05335.1| HTH domain-containing protein [Coprobacillus sp. 29_1] Length = 151 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 35/78 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQAGMTQEELARELNVTRQALSNWERDVNEPDLNMLKKICFLFGVYMD 66 Query: 72 FFFDVSPTVCSDISSEEN 89 F T +E Sbjct: 67 DFAKGVITKMETYEKKEK 84 >gi|260589352|ref|ZP_05855265.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260540433|gb|EEX21002.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 203 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N+K+ N +G RIR R G++Q +L LG + + +QKYE G V + L Sbjct: 1 MMSNEKLHNN---QIGLRIRTARKEKGINQTELANLLGKSLRTIQKYESGEIEVSIAMLN 57 Query: 61 HISEVLESPISFF--FDVSPTVCSDISSEENNVMDFISTPD 99 I++VL+ ++ +D ++S N + + Sbjct: 58 EIAKVLDCESTYLIGYDAERKPLENLSDIMNFLFQLDKIKE 98 >gi|237733521|ref|ZP_04564002.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383354|gb|EEO33445.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 211 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ I+ E V F+ + L Sbjct: 68 -ELLSGEWKYINQSEKEVCQFLRAEERL 94 >gi|212711722|ref|ZP_03319850.1| hypothetical protein PROVALCAL_02797 [Providencia alcalifaciens DSM 30120] gi|212685824|gb|EEB45352.1| hypothetical protein PROVALCAL_02797 [Providencia alcalifaciens DSM 30120] Length = 94 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L I+ QQ+ +YE+GVNR+ L ++++L+ Sbjct: 6 PVAYAVGQKIKSLRKSQGYTVFQLARECNISEQQLFRYERGVNRIDIDCLARVTKILDVN 65 Query: 70 ISFFF 74 IS F Sbjct: 66 ISDIF 70 >gi|169351319|ref|ZP_02868257.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] gi|169291541|gb|EDS73674.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] Length = 212 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E V F+ + L Sbjct: 68 -ELLSGEWKYVNQSEKEVCKFLRAEERL 94 >gi|118445169|ref|YP_879281.1| MerR family transcriptional regulator [Clostridium novyi NT] gi|118135625|gb|ABK62669.1| Transcriptional regulator, MerR family [Clostridium novyi NT] Length = 147 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 38/82 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+ IR R G++Q +L E + +Q+YEKG + L+ I++ L P+ Sbjct: 1 MNVGENIRKYRKEKGLTQSELAEKTHLATNTIQRYEKGHRQPTMQVLEKIADALGIPVYR 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 I EN + +F Sbjct: 61 LTFNDEESLKAIEKAENILKNF 82 >gi|315266122|gb|ADT92975.1| putative phage repressor [Shewanella baltica OS678] Length = 240 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 41/75 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR +R LG++Q+ LG +G++ V ++EK + L +++ L+ +S+ Sbjct: 11 KTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSW 70 Query: 73 FFDVSPTVCSDISSE 87 + V + ++E Sbjct: 71 LLNGQVAVKPESNAE 85 >gi|332798069|ref|YP_004459568.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695804|gb|AEE90261.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFFD 75 RI+ R M+ ++L E IT + + E+G+ + ++ I+ L+ P+ FF + Sbjct: 13 SRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLANPSINTMKLIANALDVPLFKFFME 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 + S + + EN ++ +G+ Sbjct: 73 EEDDIRSQVVTPENRRRVYLPDSNGV 98 >gi|313887742|ref|ZP_07821424.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846351|gb|EFR33730.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 185 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G++I+ +R L +SQE L + L +T Q + K+E + L+ +SEV +++F Sbjct: 6 GEKIKSKRRELNLSQEDLADKLFVTRQAISKWENDKATPTMTNLRELSEVFGVDMAYF 63 >gi|209808837|ref|YP_002274408.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880760|ref|ZP_05660413.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257892130|ref|ZP_05671783.1| predicted protein [Enterococcus faecium 1,231,410] gi|257895014|ref|ZP_05674667.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562584|ref|ZP_05833092.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528674|dbj|BAG74975.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814988|gb|EEV43746.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257828490|gb|EEV55116.1| predicted protein [Enterococcus faecium 1,231,410] gi|257831393|gb|EEV58000.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073094|gb|EEW61441.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 460 Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 5/111 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G I+ R M+Q E +G++ + E + L+ I+ L+ PI Sbjct: 203 NLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIV 262 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + S T E + + + +L + + +R+++ E+ Sbjct: 263 ALINDSSTDNIVEPYESLTAENILLKQENEEL-----KYEVESLRKRLYEI 308 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQH 61 K IPN D V KRI+ R LGM+ E+ G L + + +E G N +LQ Sbjct: 316 AEKMIPNLKD--VSKRIKYIRKKLGMTMEQFGSHLSNSPKSTIATWESGRNIPSQKKLQL 373 Query: 62 IS 63 I+ Sbjct: 374 IA 375 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +RIR G++ E+ G+ +G T V + +GV+ +RL I+ + + + + Sbjct: 10 ERIRKIIESKGLTLERFGDLIGDTPISSVNNWLRGVSLPNKNRLLTIANIGNTSVDW 66 >gi|225026540|ref|ZP_03715732.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353] gi|224956154|gb|EEG37363.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353] Length = 177 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 2 VGKKIRAYREFRGFSQIQLAELSGINVGTIRKYELGIRNPKPEQLEKIAAALGLNVSIFL 61 Query: 75 DVSPTVCSDISS 86 D + D+ S Sbjct: 62 DFNIETVGDVLS 73 >gi|15485441|emb|CAC67535.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 232 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 54/120 (45%), Gaps = 26/120 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + LGI++Q +E+G+ ++ + ++L+ +F + Sbjct: 5 EKLKARRKELKLTQKDIADQLGISYQAYSAWERGIKEPSKEKVNRLEQLLKVSKGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + + K + +++E R +V EK + + Sbjct: 64 ------------------------IEIVRLYNTLSN-KGKNQVVEYARDLVQKEKTRQVM 98 >gi|321272294|gb|ADW80179.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 325 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ +GK+I R++ G +Q KL +G+T +++ +E G + I+ L Sbjct: 23 SVNYELGKKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIAGALSVN 82 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + PTV + E+ + + L + +I D ++R+K+ LVR + S Sbjct: 83 VVDLLPG-PTVLRENGWYEDE------DKEIVYLTKIHREIKDQELRKKLYPLVRFVYIS 135 Query: 130 EK 131 EK Sbjct: 136 EK 137 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + + VGKRI+ +R+I +QE L +G T +++ YE+G + L Sbjct: 175 IEKEICTDSILYKVGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDIPIEILYK 234 Query: 62 ISEVLESPI 70 I++ L I Sbjct: 235 IAKTLSVNI 243 >gi|319746123|gb|EFV98396.1| prophage Sa05 protein [Streptococcus agalactiae ATCC 13813] Length = 164 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 43/97 (44%), Gaps = 11/97 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q+ L + +G+ F+ +Q +E G + + + Q +++ + + Sbjct: 2 NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQALADYFNVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMD-----------FISTPDGLQ 102 S + I N + D F++ P+ ++ Sbjct: 62 SDDLDLFIHGNLNELEDLPTVKVITNLHFLTNPEEIE 98 >gi|227357914|ref|ZP_03842260.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227161887|gb|EEI46911.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 94 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K + +GK IR +R +G++ E L + L ++ QQV +YE +++ +L Sbjct: 11 TYDTKAIH---QYLGKEIRSKRKAIGLTGEDLAKKLNVSQQQVSRYETAESKISFEKLLL 67 Query: 62 ISEVLESPISFF 73 IS+VL+ I + Sbjct: 68 ISDVLDLNIQYL 79 >gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 8/109 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DIN+GK+++ R GMS +L + G+T + + E+ + L+ I++ L+ P+ Sbjct: 3 DINLGKKVQDFRNKSGMSLRELAKRSGLTASMLSQIERDLVNPSIGTLKAIAQALDVPMF 62 Query: 72 FFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 FF D P V + EN I PD L + VR I Sbjct: 63 KFFKDDEPQVQMIVRRGENKT---IGHPDA-DLA---YTLLTPDVRGSI 104 >gi|302387287|ref|YP_003823109.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302197915|gb|ADL05486.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 331 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 3/100 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R +G SQE+L +G++ Q V K+E G + R+ +S+V + Sbjct: 1 MILAEKITALRKKVGWSQEELAYQMGVSRQSVSKWESGTSIPDLERILKLSQVFGVSTDY 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + T + ++ E + ++ L+ F++I Sbjct: 61 LLKEEIETAPTAVTQESDRDEEYKMVS--LETANEFMEIK 98 >gi|139438180|ref|ZP_01771733.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] gi|133776377|gb|EBA40197.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] Length = 137 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R + GM+Q +L E +G+T V+ YE G+ V L+ I+ L ++ Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIAAALGVSVNA 60 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPDGLQLN 104 D D+ S E++ + + GL LN Sbjct: 61 LKDYGVETAGDLMSLLVRLEDSFGIVPAADGSGLSLN 97 >gi|94967298|ref|YP_589346.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549348|gb|ABF39272.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 118 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ IR R+ GMSQ + + G+ + + E G L I+ ++ ++ Sbjct: 1 MNIGETIRNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTIPSLDTLAKIASAMDVALAT 60 Query: 73 FFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF +P SS + + V+ F++ R + + R+ ++ +V+ + +S Sbjct: 61 FFSDAPADNGTKSSPQVSDEVLRFLNQ------IRRYSSGLNDSDRRLVLTMVKKMAAS 113 >gi|309777464|ref|ZP_07672419.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914778|gb|EFP60563.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R G+SQ++L +GI+ + EK + +LQ + VL + Sbjct: 7 MHIGGKIKDLRKQRGLSQKELASSIGISASFLSDIEKERSNPSFDKLQRLCVVLNVQPGY 66 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLNR--YFIQIDDVKVRQK 118 F + + + + + +E +M + T D L ++++ + R K Sbjct: 67 FLSHENTYSEYNSLYTEIMKLMKCVETWDEADLLELYNYLKVKTITQRNK 116 >gi|291326603|ref|ZP_06125112.2| MrfJ protein [Providencia rettgeri DSM 1131] gi|291313684|gb|EFE54137.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 121 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + VGK ++ R LG+S E + + LGI+ QQ+ +YE+G N + L Sbjct: 9 MKKKKDTTYYISQLVGKCLQEYRQELGISGENIAKELGISQQQLSRYERGENALTVDVLF 68 Query: 61 HISEVLESPISFFF 74 +L F+ Sbjct: 69 KFILILGINFPDFY 82 >gi|154499775|ref|ZP_02037813.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] gi|150271373|gb|EDM98630.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] Length = 267 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 37/79 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE L E + +T Q + K+E G + + +S++ + Sbjct: 1 MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFNVSSDY 60 Query: 73 FFDVSPTVCSDISSEENNV 91 T ++ ++ N Sbjct: 61 LIKDEMTEPDELPYKKRNY 79 >gi|320546716|ref|ZP_08041027.1| transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320448595|gb|EFW89327.1| transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 228 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 44/86 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ LG+ Q +L + LGI+ Q +EKG ++ + L + E+L+ P +F ++ Sbjct: 5 EKLKNRRLELGLKQTELAKQLGISKQSYFAWEKGTSQPTKANLLKLEELLQVPHGYFSEL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 +++N D L+ Sbjct: 65 EIATLYKQLTDQNQEHALTYVRDLLE 90 >gi|228926912|ref|ZP_04089978.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936979|ref|ZP_04099721.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822694|gb|EEM68584.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832647|gb|EEM78218.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 118 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R + QE+LG+ +G++ Q + KYEKG ++ +++ P+ + Sbjct: 4 IGERIFELRKEKKLVQEELGKYIGVSKQTISKYEKGTKIPSRENIEKLADFFSVPVDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S + + NN+ + + + Sbjct: 64 GKSDS----TNKSSNNIKEIFESDE 84 >gi|291548332|emb|CBL21440.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 242 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG++IR R M+ + L + + + + KYE G V L IS++L+ +S Sbjct: 7 YVGEQIRKYRKAGKMTLQDLADAIHKSRATICKYENGDISVDIETLYEISQILQVSMSQL 66 Query: 74 FDVSPTVCSDISSEEN 89 P + S+ Sbjct: 67 TTGLPETAIEPSNAPG 82 >gi|212711620|ref|ZP_03319748.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] gi|212685722|gb|EEB45250.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] Length = 107 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI---- 70 VG RIR R MS ++L + LGI+ Q ++E G R+ L ISE+LE I Sbjct: 10 VGARIRTLRKDRNMSIQQLSKLLGISQQHQSRHELGEMRIHVDTLYSISEILELDIQELM 69 Query: 71 SFFFDVSPTVCSDISSEENN--VMDFISTPD 99 S F D C+ E++N V + + +P+ Sbjct: 70 SDFIDSYSCTCTSDKKEKDNLLVAELLLSPE 100 >gi|293400018|ref|ZP_06644164.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306418|gb|EFE47661.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 108 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 8/106 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+RIR R M+ ++L + +G + Q +Q+YE G +N + + +++ I+ +L + +F Sbjct: 4 IGERIRTARKKQNMTLDELAKKVGTSKQTIQRYETGIINNIPSDKIKAIAAILCTTPAFL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQ 117 T S I++ N +D ++ GL + +I + K R+ Sbjct: 64 --TGWTEKSPITTLSN--IDLLNDK-GLAKVQEYINDLLLSDKYRK 104 >gi|317501524|ref|ZP_07959721.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897079|gb|EFV19153.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + K N +G+ I+ R M Q++L + +GI Q + K E+GVN L+ Sbjct: 1 MEHDTKKIN----FLGENIQTIRKHRKMKQQELADAIGINMQSLSKIERGVNYPTFDTLE 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 I +VLE + ++ + E V F+ T + L Sbjct: 57 KIMDVLEVTPN---ELLSGEWKFVQQAEKEVNQFLRTEERL 94 >gi|291525583|emb|CBK91170.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528262|emb|CBK93848.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 167 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R + M+Q++L + GI ++KYE G +LQ I+E L ++ F Sbjct: 7 IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGISVTVFL 66 Query: 75 DVSPTVCSDISS 86 D SD+ S Sbjct: 67 DYDINTVSDVLS 78 >gi|262282005|ref|ZP_06059774.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262262459|gb|EEY81156.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 190 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R+ GM+Q++L + +G+T Q + YEKG RL+ I++ L+ + F Sbjct: 18 IKSARLKAGMTQKELAKIIGVTKQTIINYEKGTTDPSWERLEDIAKALKVDVDALF 73 >gi|257883596|ref|ZP_05663249.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257819254|gb|EEV46582.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] Length = 383 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 5/111 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G I+ R M+Q E +G++ + E + L+ I+ L+ PI Sbjct: 126 NLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIV 185 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + S T E + + + +L + + +R+++ E+ Sbjct: 186 ALINDSSTDNIVEPYESLTAENILLKQENEEL-----KYEVESLRKRLYEI 231 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQH 61 K IPN D V KRI+ R LGM+ E+ G L + + +E G N +LQ Sbjct: 239 AEKMIPNLKD--VSKRIKYIRKKLGMTMEQFGSHLSNSPKSTIATWESGRNIPSQKKLQL 296 Query: 62 IS 63 I+ Sbjct: 297 IA 298 >gi|295693589|ref|YP_003602199.1| transcriptional regulator [Lactobacillus crispatus ST1] gi|295031695|emb|CBL51174.1| Transcriptional regulator [Lactobacillus crispatus ST1] Length = 381 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R+ ++ L + +G++ Q + KYE + ++ Q + +VL P+ FF D Sbjct: 7 GTRLKEARLFNHLTMSSLADQVGVSKQAISKYEHNKIEISSNVFQKLVQVLNFPLYFFTD 66 Query: 76 VSPTVCSDISS 86 V D + Sbjct: 67 VEKVPYQDDGT 77 >gi|253572160|ref|ZP_04849564.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838340|gb|EES66427.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 135 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 10/128 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP--I 70 +VG+ ++ R+ LGM QE L LGI+ Q++ K EK + + L I+ L + Sbjct: 12 RHVGRNLQRIRVYLGMKQEALAADLGISQQEISKIEKQ-DEIEDKLLTQIATALGVSAEV 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FDV + + N+ D +P + + KI+EL ++ SE Sbjct: 71 IRDFDVERAIYN-----INSYKDATISPGATATV--YAHTQQINPLDKIVELYERLLQSE 123 Query: 131 KKYRTIEE 138 ++ + + Sbjct: 124 REKIELLK 131 >gi|228969787|ref|ZP_04130551.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228789939|gb|EEM37757.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 184 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +INVG++I+ R G++ ++L E IT + + EKG+ L+ IS L+ PI Sbjct: 2 HNINVGQKIKAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALKIPI 61 Query: 71 SFFFDVSPTVCSDISSEE 88 FF DI++EE Sbjct: 62 FNFF------LEDINTEE 73 >gi|116494736|ref|YP_806470.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239631670|ref|ZP_04674701.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066285|ref|YP_003788308.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116104886|gb|ABJ70028.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526135|gb|EEQ65136.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438692|gb|ADK18458.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 24/143 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R G+SQ L E +GI+ Q + KYE G+ ++ + ++L + Sbjct: 3 GERLTQLRKQKGLSQNDLAEAIGISRQAISKYENGLAEPDLDKIAKLRDILGVSYADLLG 62 Query: 76 VSPT---VCSDISSEENNVMDFISTP----------DGLQLNRY--FIQIDDVKVRQ--- 117 P +++SS + I+ +G+ F+ I + R Sbjct: 63 KEPKQQITSNNVSSASITITSLINDRLGSYTGFQVAEGIPSKTAPSFLLIGESSQRGFLG 122 Query: 118 --KIIEL----VRSIVSSEKKYR 134 +++EL R +E K Sbjct: 123 TTRLVELGWYQTRQAAETEIKKI 145 >gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] Length = 126 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G IR R G++Q+KLGE GI ++KYE G LQ I++ L+ P++ Sbjct: 4 YTGDMIRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVN 61 >gi|167759352|ref|ZP_02431479.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] gi|167662909|gb|EDS07039.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] Length = 257 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+LRR GMSQE+L + LGIT Q V K+E G S+L +SE+ + I + + Sbjct: 8 IQLRRK-QGMSQEQLADRLGITRQSVSKWESGSAAPELSKLITLSEMFQVSIDYLVKDAE 66 Query: 79 TVCSDISSEENNVMD 93 E + + Sbjct: 67 EPKGAEKEESRRLEE 81 >gi|226311800|ref|YP_002771694.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226094748|dbj|BAH43190.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 183 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 42/85 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V K+IR R+ ++ + L E G + + + E+G + + + LQ I+E L PI++F Sbjct: 3 HVYKKIRALRIQQELTLKDLSEKSGFSVSFLSQVERGNSSLAITSLQKIAECLGVPITYF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 F+V V + + +P Sbjct: 63 FEVDKDVTYHTPIAKRKTLQIEGSP 87 >gi|313123989|ref|YP_004034248.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280552|gb|ADQ61271.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 209 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 27/124 (21%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL-------GITFQQVQKYEKGVNRVGASRLQHISEV 65 +++G RIRL R M+ E+L L G T ++ K+E S L ++ Sbjct: 1 MSIGTRIRLLRKSKKMTLEELANQLNSRSSSSGFTKGRLSKWENDREEPKLSSLNQVARF 60 Query: 66 LESPISFFFDVSPT-------------------VCSDISSEENNVMDFISTPDGLQLNRY 106 I +FF+ S C D + N++D+I+ P+ + Sbjct: 61 FNVDIDYFFNDSHPSNTLPLSRNTIRVPVIGTIACGDPIDADENIVDYINVPEPIP-ANA 119 Query: 107 FIQI 110 F I Sbjct: 120 FALI 123 >gi|199598451|ref|ZP_03211869.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258508930|ref|YP_003171681.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199590635|gb|EDY98723.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257148857|emb|CAR87830.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259650223|dbj|BAI42385.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 343 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 70/155 (45%), Gaps = 32/155 (20%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR +R+ G++QE L + +G+T V K+EKG++ + L ++ L + ++ Sbjct: 1 MHLNQIIRNKRLAAGLTQEALAQKVGVTAPAVSKWEKGISYPDITLLPILARNLNTDVNT 60 Query: 73 FFDVSPTV---------------------CSDISSEENNVMDFISTPDGLQLNRYFIQ-- 109 D S + + ++ + + ++ S P + F+Q Sbjct: 61 LLDFSADLDPAALRRFYTKLTATAQKDGWKAAVALVDEELREYPSVPQLQMMVPAFLQGL 120 Query: 110 ---IDD---VKVRQKIIELVRSIVSSEKKYRTIEE 138 I VR++II+L ++ SE+ + ++ E Sbjct: 121 KSDIPTNEWPAVRERIIQLYQA---SERPHSSLPE 152 >gi|148263396|ref|YP_001230102.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396896|gb|ABQ25529.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 174 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G R++ RM ++Q++L + G+ + + K E+G L ISE L P+ Sbjct: 29 LEIGSRLKRLRMERSLTQKELAVRVSGGLDYTYIGKIERGEQLPSLKILLKISEALSVPV 88 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPD-GLQLNRY 106 + FF D + SDISS E + ++ + + G +L R Sbjct: 89 ASFFQDEAVAAVSDISSSE---LRYLVSEETGRELVRA 123 >gi|229553274|ref|ZP_04441999.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540114|ref|YP_003174613.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229313360|gb|EEN79333.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257151790|emb|CAR90762.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 346 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 70/155 (45%), Gaps = 32/155 (20%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR +R+ G++QE L + +G+T V K+EKG++ + L ++ L + ++ Sbjct: 4 MHLNQIIRTKRLAAGLTQEALAQKVGVTSPAVSKWEKGISYPDITLLPILARNLNTDVNT 63 Query: 73 FFDVSPTV---------------------CSDISSEENNVMDFISTPDGLQLNRYFIQ-- 109 D S + + ++ + + ++ S P + F+Q Sbjct: 64 LLDFSADLDPAALRRFYTKLTATAQKDGWKAAVALVDEELREYPSVPQLQMMVPAFLQGL 123 Query: 110 ---IDD---VKVRQKIIELVRSIVSSEKKYRTIEE 138 I VR++II+L ++ SE+ + ++ E Sbjct: 124 KSDIPTNEWPAVRERIIQLYQA---SERPHSSLPE 155 >gi|197284203|ref|YP_002150075.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194681690|emb|CAR40796.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 94 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K + +GK IR +R +G++ E L + L ++ QQV +YE +++ +L Sbjct: 11 TYDTKAIH---QYLGKEIRSKRKAIGLTGEDLAKKLNVSQQQVSRYETAESKISFEKLLL 67 Query: 62 ISEVLESPISFF 73 IS+VL+ I + Sbjct: 68 ISDVLDLNIQYL 79 >gi|319743893|gb|EFV96285.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 150 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R+ ++Q +L + L T Q + +YEKG + L +S++ E I Sbjct: 3 LNQYVGNKIKQFRLEKKLTQTQLADLLDTTKQTISRYEKGDRKANQDVLFALSDLFEKTI 62 Query: 71 SFFF 74 FF Sbjct: 63 DDFF 66 >gi|304403726|ref|ZP_07385388.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346704|gb|EFM12536.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 116 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G++Q++L E + + E+G V L I++ L+ +S FF Sbjct: 8 VGARIREIRKSKGLTQDQLAEISQFHYSYIGGVERGERNVSLENLAKIADALQVKLSLFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 D S + SE + ++ +S D Sbjct: 68 DYEEPKSSAVDSELDEIIYLLSKRD 92 >gi|240147061|ref|ZP_04745662.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] gi|257200784|gb|EEU99068.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] Length = 334 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E L ++ Q V K+E + R+ +SE+L + Sbjct: 1 MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEILGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 I E + DF ++ F++I Sbjct: 61 LLKDECETPQLIEGVEPSNKDFPLKKVSMEEANDFMEI 98 >gi|194467035|ref|ZP_03073022.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454071|gb|EDX42968.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 115 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 10/116 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESP 69 ++ +GK I RR L M+QE+L E ++ + K E+G + A L +++ L P Sbjct: 1 MNKTIGKNITTRRHQLKMTQEQLAELSNLSVNYISKIERGTTPNISAKTLYRLAKGLNVP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + T ++I + + F++ + + + ++ + I++L++S Sbjct: 61 MENLLKEETTYTTNIGPYQQQLETFLNQ---------YPREEAEQLSKSILKLLKS 107 >gi|261344646|ref|ZP_05972290.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567562|gb|EFB73097.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+ N+GK ++ R G++ +L + + ++ QQ+ +YE GVN + +L + LE Sbjct: 5 DPLSNNIGKMLKSYRRRTGLTGTELAKRINVSQQQISRYENGVNNITFDKLMILFNALEM 64 Query: 69 ---PISFFFD 75 I FF+ Sbjct: 65 NRYDIDIFFE 74 >gi|328948780|ref|YP_004366117.1| hypothetical protein Tresu_1938 [Treponema succinifaciens DSM 2489] gi|328449104|gb|AEB14820.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 151 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I GK+IR R LGM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 NITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLKKICFLFGVNMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|292557941|gb|ADE30942.1| Helix-turn-helix type 3 [Streptococcus suis GZ1] Length = 149 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I GK+IR R LGM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 NITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLKKICFLFGVNMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|309774998|ref|ZP_07670014.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319936258|ref|ZP_08010677.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|325262574|ref|ZP_08129311.1| transcriptional regulator, PbsX family [Clostridium sp. D5] gi|308917252|gb|EFP62976.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319808690|gb|EFW05232.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|324032406|gb|EGB93684.1| transcriptional regulator, PbsX family [Clostridium sp. D5] Length = 211 Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E V F+ + L Sbjct: 68 -ELLSGEWKYVNQSEKEVCQFLRAEERL 94 >gi|257065271|ref|YP_003144943.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792924|gb|ACV23594.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 272 Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V + I+ R G++QE+L + +T Q V ++E G + + ++ VL P Sbjct: 1 MKVSEAIQNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKLLASVLGVPAVG 60 Query: 73 FFDVSPTVC 81 FD+ Sbjct: 61 LFDLPDAPA 69 >gi|223985675|ref|ZP_03635723.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] gi|223962366|gb|EEF66830.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] Length = 283 Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K + N + G+ IR R+ G +Q++LG +GI+ + + K+E+G++ + L Sbjct: 5 MTEDKIMQNLTEERTGQLIRELRLKAGWTQKELGMKIGISDKAISKWERGLSFPDITLLP 64 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE--ENNVMDFIS 96 ++EV + ++ E ++ V D ++ Sbjct: 65 RLAEVFHVSVGEIISGQQLSEPALNPEQLDDVVADTLA 102 >gi|223986671|ref|ZP_03636661.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] gi|223961357|gb|EEF65879.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] Length = 124 Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 4 NKKIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K+ + VD +G+R+R RM L ++QE L E +G++ + E G N+V I Sbjct: 2 SKEKKDHVDYCLLGQRVRRARMKLNLTQEVLAEKVGVSIPTISHIETGTNKVSLELFVSI 61 Query: 63 SEVLESPIS 71 + L Sbjct: 62 ANALNVTPD 70 >gi|302555572|ref|ZP_07307914.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302473190|gb|EFL36283.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 212 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R+ G S L +G++ V + E G ++ S L I+ L + F Sbjct: 9 VGARIRQARLERGTSLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVESLF 68 Query: 75 DVSPTVCSDISSEENNVM 92 D + +S V+ Sbjct: 69 DARASAPVAAASPPGTVL 86 >gi|225377956|ref|ZP_03755177.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] gi|225210207|gb|EEG92561.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] Length = 339 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +I+ R GMSQ+ + + LG+T Q V K+E + + L I+ + I Sbjct: 2 KTIGNKIKELRRSKGMSQKDIADKLGVTSQAVSKWENDGSLPEMTMLPDIASLFGIQIDD 61 Query: 73 FFDVS 77 F+ S Sbjct: 62 LFEYS 66 >gi|153954446|ref|YP_001395211.1| transcription regulator [Clostridium kluyveri DSM 555] gi|153954541|ref|YP_001395306.1| transcription regulator [Clostridium kluyveri DSM 555] gi|146347327|gb|EDK33863.1| Predicted transcriptional regulator with an addtional conserved domain [Clostridium kluyveri DSM 555] gi|146347399|gb|EDK33935.1| Predicted transcriptional regulator with an addtional conserved domain [Clostridium kluyveri DSM 555] Length = 381 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N DI V RI+ R G+S +L E + +T Q + +YEKG+ L+ +S L Sbjct: 2 VKNNFDI-VPARIKEARESRGLSMSELSELIEVTSQAISQYEKGIMNPSVFVLKKMSNAL 60 Query: 67 ESPISFFFDVSPTVCSDISS 86 PI FF+ + S+ Sbjct: 61 NFPIQFFYKSENERTCENSA 80 >gi|321272346|gb|ADW80227.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 236 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ +G +I R++ G +Q KL +G+T +++ +E G + I+ L Sbjct: 23 SVNYELGXKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIAGALSVN 82 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + PTV + E+ + + L + +I D ++R+K+ LVR + S Sbjct: 83 VVDLLPG-PTVLRENGWYEDE------DKEIVYLTKIHREIKDQELRKKLYPLVRFVYIS 135 Query: 130 EKKYRTIEEECMVE 143 EK +EE +E Sbjct: 136 EK---ISQEEAKIE 146 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + + VGKRI+ +R+I +QE L +G T +++ YE+G + Sbjct: 175 IEKEICTDSILYKVGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDIPICNSLD 234 Query: 62 I 62 + Sbjct: 235 L 235 >gi|294813464|ref|ZP_06772107.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] gi|294326063|gb|EFG07706.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] Length = 457 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 10/120 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R G+SQE+L E G++ VQK E+G V L I+ L S F Sbjct: 42 IGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 101 Query: 75 DVSP--TVCSDISSEENNVM--DFISTPDGLQ--LNRYFIQIDD-VKVRQKII---ELVR 124 P V D +++++ V + P G+ L ++ D +R++++ +L R Sbjct: 102 VAGPPEPVVGDDATKQSLVAIRAALMPPIGIDGVLVASVPKVGDLSALRRRVLAIHDLYR 161 >gi|120400369|gb|ABM21424.1| transcriptional regulator [Lactobacillus johnsonii] gi|120400393|gb|ABM21447.1| transcriptional regulator [Lactobacillus johnsonii] Length = 374 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R M+ L E +G+T Q + +YE+ Q I L+ P++FF + Sbjct: 5 GTRLKEARYFRKMTITDLAEKIGVTKQMISRYERETGEPSLETFQKIVSALKFPVNFFTE 64 Query: 76 VSP 78 Sbjct: 65 SDS 67 >gi|320354394|ref|YP_004195733.1| XRE family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122896|gb|ADW18442.1| transcriptional regulator, XRE family [Desulfobulbus propionicus DSM 2032] Length = 436 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R G+SQ++L E G+T + + EK + L ++E L ++ FF Sbjct: 256 LGARIKAVRKKQGLSQKELAEKAGVTPSSISQIEKNLIYPSLPALFRLAESLSIGVASFF 315 Query: 75 DVSPTVC 81 + Sbjct: 316 EGLAAEA 322 >gi|302390667|ref|YP_003826488.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302201295|gb|ADL08865.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 114 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N ++G+R++ R G++Q+++ + LGI Q+ YE G + + LQ ++ + Sbjct: 1 MNNSFLKSLGERLQEARKKCGLTQDQVAKILGINKVQLSYYETGAREINITLLQELANLY 60 Query: 67 ESPISFFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 I +F + +I+ + + + + + F++ Sbjct: 61 GYSIDYFLGNEDKKEPEVEIAFRADEFCE--EDLETIAFAKTFLR 103 >gi|240948773|ref|ZP_04753145.1| phage repressor [Actinobacillus minor NM305] gi|240296989|gb|EER47567.1| phage repressor [Actinobacillus minor NM305] Length = 218 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR RR L ++Q+ L L G++ + ++E + A + +S VL+ IS+ Sbjct: 6 LGDRIRNRRKELKLTQKDLATALKGVSHVAISQWESNTTKPNAENILDLSTVLQCEISWL 65 Query: 74 FDVSPTV 80 + Sbjct: 66 LRGNGES 72 >gi|251782746|ref|YP_002997049.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391376|dbj|BAH81835.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 257 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+++ R G+SQE L E +G T Q + K+E +L +S V E + + Sbjct: 1 MNFGEKLFKLRKEKGISQENLAEQIGTTRQAISKWENNQGFPEVEKLLQLSNVFEVSVDY 60 Query: 73 FFDVSPTV 80 TV Sbjct: 61 LLKDDKTV 68 >gi|229827219|ref|ZP_04453288.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] gi|229788837|gb|EEP24951.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] Length = 202 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 37/75 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +RI+ R G+SQE+L + + ++ Q V K+E G + ++ +SE E + Sbjct: 1 MNISERIQELRKAKGISQEELADKIDVSRQAVSKWENGQSIPDLEKVILLSEYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSE 87 V + + + Sbjct: 61 ILKGIEPVKKNGTDK 75 >gi|228953531|ref|ZP_04115575.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229079669|ref|ZP_04212202.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228703509|gb|EEL55962.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228806155|gb|EEM52730.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 184 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 DINVG +IR R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 DINVGHKIRAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + + F Sbjct: 63 NFFLEDTNTEELVVRANQRKKITF 86 >gi|225017440|ref|ZP_03706632.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] gi|224949850|gb|EEG31059.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R +G+SQEKL E +G++ Q + K+E G+ ++ +SE + + Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDYLLKD 71 Query: 77 SPTVCSDISSEE 88 + T + Sbjct: 72 NITEPTPPQESA 83 >gi|312136006|ref|YP_004003344.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311776057|gb|ADQ05544.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 177 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R+ R G + +++ E LGIT KYE+ +L I+++ + F Sbjct: 3 GERLRMLRNEKGFTMQQMAEMLGITIGSWAKYERNEAEPSFDKLVKIADIFNVSVDFLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 + + + E N+ ++I + Sbjct: 63 RTNVRNDKLGNNETNIKNYIVDIE 86 >gi|262283491|ref|ZP_06061257.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA] gi|262260982|gb|EEY79682.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA] Length = 288 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 14/107 (13%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ RR L +SQ++L + GI Q Q+ + E G G+ L +++ L+ + +FFD Sbjct: 7 SRLKQRRKELKLSQKELAD--GICKQGQISRLENGEYTPGSDLLHELAKRLKVSMDYFFD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + SS + ++DF L++ FI + + + I EL Sbjct: 65 -----EENNSSRNSELLDFK------NLSKKFIHYRNYESLRYIYEL 100 >gi|259501148|ref|ZP_05744050.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|302190406|ref|ZP_07266660.1| DNA-binding protein [Lactobacillus iners AB-1] gi|309804359|ref|ZP_07698435.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|312871026|ref|ZP_07731129.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325913257|ref|ZP_08175625.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|259167842|gb|EEW52337.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|308163571|gb|EFO65842.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|311093521|gb|EFQ51862.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477360|gb|EGC80504.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 210 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 41/82 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 D + I + +V + Sbjct: 61 LLDKDNAIDLSIIKKPIDVAKY 82 >gi|218694781|ref|YP_002402448.1| transcriptional repressor DicA [Escherichia coli 55989] gi|309793330|ref|ZP_07687757.1| transcriptional repressor DicA [Escherichia coli MS 145-7] gi|218351513|emb|CAU97222.1| putative repressor protein of division inhibition from phage origin [Escherichia coli 55989] gi|308122917|gb|EFO60179.1| transcriptional repressor DicA [Escherichia coli MS 145-7] Length = 152 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 2/110 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 21 KTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 80 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ +D + D L++ R + + + + ++ EL Sbjct: 81 ILFGDEDKTPAPPVSLDSTLDL--SEDELEMLRLYRALPKSEQQAQLSEL 128 >gi|83593475|ref|YP_427227.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576389|gb|ABC22940.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 196 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRI R GMSQ L + LG+ + YE+G N ++ ++ +L +F Sbjct: 2 IEIGKRIAEARKDQGMSQYALAKLLGVNQSTIAYYERGRNTPKPWIVEDLARILNVSAAF 61 Query: 73 F 73 Sbjct: 62 L 62 >gi|219855036|ref|YP_002472158.1| hypothetical protein CKR_1693 [Clostridium kluyveri NBRC 12016] gi|219568760|dbj|BAH06744.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 384 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N DI V RI+ R G+S +L E + +T Q + +YEKG+ L+ +S L Sbjct: 5 VKNNFDI-VPARIKEARESRGLSMSELSELIEVTSQAISQYEKGIMNPSVFVLKKMSNAL 63 Query: 67 ESPISFFFDVSPTVCSDISS 86 PI FF+ + S+ Sbjct: 64 NFPIQFFYKSENERTCENSA 83 >gi|218705070|ref|YP_002412589.1| transcriptional repressor DicA [Escherichia coli UMN026] gi|291283201|ref|YP_003500019.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300895972|ref|ZP_07114540.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|301326444|ref|ZP_07219796.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|218432167|emb|CAR13055.1| putative repressor protein of division inhibition from phage origin [Escherichia coli UMN026] gi|290763074|gb|ADD57035.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300360122|gb|EFJ75992.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|300846860|gb|EFK74620.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|320652127|gb|EFX20458.1| transcriptional repressor DicA [Escherichia coli O157:H- str. H 2687] gi|320657721|gb|EFX25510.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 152 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 2/110 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 21 KTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 80 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ +D + D L++ R + + + + ++ EL Sbjct: 81 ILFGDEDKTPAPPVSLDSALDL--SEDELEMLRLYRALPKSEQQAQLSEL 128 >gi|222106747|ref|YP_002547538.1| transcriptional regulator [Agrobacterium vitis S4] gi|221737926|gb|ACM38822.1| transcriptional regulator [Agrobacterium vitis S4] Length = 219 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N +++ +G +R R LG++ L G++ + K E G LQ +S+ L Sbjct: 27 RANNLEMAIGHEVRTFRKKLGITVADLATATGMSVGMLSKIENGNISASLGTLQSLSKAL 86 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF EE F+ +G+ L R Sbjct: 87 GVPMTAFFKGY---------EEPRSASFVKAGEGVHLER 116 >gi|320160947|ref|YP_004174171.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] gi|319994800|dbj|BAJ63571.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] Length = 206 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K +D VG+R+R R +S L G++ + E+G+ S L Sbjct: 1 MEGFDKQAESID--VGQRLRALREERNISIRALARLSGLSANALSMIERGMTSPSVSTLN 58 Query: 61 HISEVLESPISFFFDVSP 78 ++ L+ P++ FF P Sbjct: 59 KLAIALKVPVTAFFRTMP 76 >gi|289168608|ref|YP_003446877.1| transcriptional regulator [Streptococcus mitis B6] gi|288908175|emb|CBJ23017.1| transcriptional regulator [Streptococcus mitis B6] Length = 228 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 26/120 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LG++FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGVSFQAYSAWERGIKEPSKEKVSQLENILKVAKGYFTQ- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + + ++K++ R + E+ + I Sbjct: 64 ------------------------IEIVRLYHSL-SKQGKEKVVLYARDLAQEEQVQKVI 98 >gi|160936303|ref|ZP_02083673.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] gi|158440772|gb|EDP18503.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R G++Q +L +G + + VQKYE G V + I++ L++ +F Sbjct: 9 IGQRIKTLRKRKGLNQTQLANLIGKSLRTVQKYETGEIEVSIDVVNEIAKHLDTTPTF 66 >gi|309804464|ref|ZP_07698531.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|309809826|ref|ZP_07703678.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|312873153|ref|ZP_07733212.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|312873404|ref|ZP_07733455.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|325911527|ref|ZP_08173936.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|308166217|gb|EFO68433.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|308169868|gb|EFO71909.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|311091088|gb|EFQ49481.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311091386|gb|EFQ49771.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325476657|gb|EGC79814.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 210 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 41/82 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 D + I + +V + Sbjct: 61 LLDKDNAIDLSIIKKPIDVAKY 82 >gi|332653138|ref|ZP_08418883.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518284|gb|EGJ47887.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 348 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR +R L ++QE+L + LG++ V K+EKG + L ++ VL + ++ Sbjct: 1 MKLGEIIREKRKALSLTQEQLADYLGVSAPAVHKWEKGTTYPDITTLPALARVLRTDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + + +D + + + F + D Sbjct: 61 LLSFQEELTDEEITRFLEELDRMISQESYD--AAFQRAMDQ 99 >gi|295425417|ref|ZP_06818113.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] gi|295064868|gb|EFG55780.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] Length = 143 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 1 MVGNK-KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ +K K+ +N+ ++I R SQE L E + ++ Q V K+E G + ++ Sbjct: 1 MIFSKIKLSEVTSMNLNQKITQLRNDKKWSQEDLAEKINVSRQSVSKWESGQTKPDLDKI 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISS 86 +SE+ + ++ S+ Sbjct: 61 IVLSEIFNVSTDYLLKDDEKEINNAST 87 >gi|258508248|ref|YP_003170999.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257148175|emb|CAR87148.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus GG] gi|259649565|dbj|BAI41727.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 176 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R G+SQ +L E +GI+ Q + KYE + ++Q + +L + Sbjct: 3 GERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADLLG 62 Query: 76 VSPTVCSDISSEENNVMDFIS 96 P ++ ++ + S Sbjct: 63 NEPPEPKPAANRPSSAITITS 83 >gi|295111675|emb|CBL28425.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Synergistetes bacterium SGP1] Length = 233 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI RR LGM + +L E LG+ + +YE G + S I++ L +++ Sbjct: 9 IGARIMARRKALGMKRPELAERLGVKPNTLYRYEIGSIGIRDSMKSRIAKELGVSLAYLV 68 Query: 75 DVSPTVCSDISSEENN 90 + V + SEE Sbjct: 69 SGTAEVGRERGSEETP 84 >gi|254520499|ref|ZP_05132555.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226914248|gb|EEH99449.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 111 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR R+ L ++QE+L E + ++ + + E+G + L I + L I + Sbjct: 4 KLLGNRIRQERLKLNLTQEQLAEKVDLSTSYIGQIERGERNISLDTLVVICKSLGVTIDY 63 Query: 73 FFDVSPTVCSDI 84 S + DI Sbjct: 64 LLQDSINIEEDI 75 >gi|329725145|gb|EGG61635.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 112 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISS 86 F +DI+S Sbjct: 68 LFPTRNNKKNDITS 81 >gi|148272654|ref|YP_001222215.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830584|emb|CAN01520.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 475 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 3/129 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R G++ + LGE GI Q+ E G S L I+ L ++ Sbjct: 6 IGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALGVDVTHLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 E + S GL L + + + ++ L R + E++ Sbjct: 66 AADAPDARSALEIELDRAQRSSLYGGLGLPAVPASRALPQETL-EALVGLHRELARRERE 124 Query: 133 YRTIEEECM 141 EE Sbjct: 125 SIATPEEAR 133 >gi|311111466|ref|ZP_07712863.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066620|gb|EFQ46960.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 116 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +SQ +L + L ++ Q + K+E G + L ++E + + Sbjct: 2 IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 S S + + F++ D L Sbjct: 62 -GSDKTSEPKSVDLEKTLSFLAMVDAL 87 >gi|199597505|ref|ZP_03210934.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|199591528|gb|EDY99605.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] Length = 176 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R G+SQ +L E +GI+ Q + KYE + ++Q + +L + Sbjct: 3 GERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADLLG 62 Query: 76 VSPTVCSDISSEENNVMDFIS 96 P ++ ++ + S Sbjct: 63 NEPPEPKPAANRPSSAITITS 83 >gi|226362101|ref|YP_002779879.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240586|dbj|BAH50934.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 186 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +IR R G++ +L + G++ V + E+G+ + L ++ L+ P+ FF Sbjct: 4 VGNKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLANPSFTTLAQLAHGLDIPVGRFF 63 Query: 75 DVSPTVCSDI 84 P S + Sbjct: 64 IGQPDTTSPV 73 >gi|260664721|ref|ZP_05865573.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|260561786|gb|EEX27758.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] Length = 103 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 3/97 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R ++Q++L + L + + +E G N L+ +S + + Sbjct: 1 MNISSRIKYLRNEHHLTQKELAKMLNVKPTTISGWELGRNEPSIDTLKKLSSLFNVSTEY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS---TPDGLQLNRY 106 + I + +V+ + +P+ L + R Sbjct: 61 LIGGEDNSSNTIDLKTTDVLSYDGKPVSPEDLAIIRA 97 >gi|158318022|ref|YP_001510530.1| helix-turn-helix domain-containing protein [Frankia sp. EAN1pec] gi|158113427|gb|ABW15624.1| helix-turn-helix domain protein [Frankia sp. EAN1pec] Length = 366 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+RIR R +LG+SQ L E G+ + K E G L I+ V +P SFF Sbjct: 14 GERIRAARTLLGLSQGDLAEASGVGQTMISKIESGAKYPSDDLLDTIAAVTGTPRSFFDV 73 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D+ P S + D T QL +I Sbjct: 74 VPLDIPPMTLRFRKSSQAKRGD---TKRVDQLLAEAYRI 109 >gi|237809770|ref|YP_002894210.1| helix-turn-helix domain-containing protein [Tolumonas auensis DSM 9187] gi|237502031|gb|ACQ94624.1| helix-turn-helix domain protein [Tolumonas auensis DSM 9187] Length = 355 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G+S + LG+ +G++ ++KYE N + + +++VL +FF Sbjct: 2 IGERLLRARAAAGLSMKALGDLVGVSANMIKKYEHNQNMPSSGVMIKLAKVLSVRSEYFF 61 >gi|297617997|ref|YP_003703156.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145834|gb|ADI02591.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 216 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG RI+ R G++QE+LG+ L + + KYEKG + L+ +++ + + Sbjct: 4 VGSRIKQLREERGLTQEQLGKILNVQKAAISKYEKGHTLPDSEALKKLAKFFNVSVDYL 62 >gi|259909785|ref|YP_002650141.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|224965407|emb|CAX56939.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|283479880|emb|CAY75796.1| putative HTH-type transcriptional regulatory protein PF1851 [Erwinia pyrifoliae DSM 12163] Length = 133 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 36/67 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+R+ R G++Q +L + L ++ Q VQ +E G R+ S L ++++ P+ Sbjct: 24 IALGERMTRLRKEQGITQSELADKLNVSQQTVQAWEAGRRRIKVSSLPFVAQIFSVPLEE 83 Query: 73 FFDVSPT 79 F SP Sbjct: 84 LFGGSPE 90 >gi|253579354|ref|ZP_04856624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849452|gb|EES77412.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 298 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I +R LGM+Q++L E LG++ + V K+E+GV S + + +L ++ Sbjct: 4 IKIGKYIAGKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSILGISLNE 63 Query: 73 FFDVSPTVCSD-ISSEENNVMDFIST 97 F + I E N+++ I Sbjct: 64 FLAGEDIAQENMIQKSETNIIEVIRD 89 >gi|325261368|ref|ZP_08128106.1| DNA-binding protein [Clostridium sp. D5] gi|324032822|gb|EGB94099.1| DNA-binding protein [Clostridium sp. D5] Length = 182 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R MSQE+L LG++ Q V K+E + + ++LE + + Sbjct: 1 MTLGEKIQKHRKEKSMSQEELAALLGVSRQAVSKWELNDTIPDTENVIQLGKILEVSLDY 60 Query: 73 FFDVS---PTVCSDISSEEN 89 P D ++ N Sbjct: 61 LLKPERETPDEGGDTATAGN 80 >gi|299534571|ref|ZP_07047903.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] gi|298729944|gb|EFI70487.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] Length = 180 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L I EVL S Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSRPKD 60 Query: 73 FFDVSPTVCSDISSEEN 89 FFD + +EE+ Sbjct: 61 FFDDESPEQKVVYTEED 77 >gi|260855310|ref|YP_003229201.1| putative phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|260868064|ref|YP_003234466.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|293405073|ref|ZP_06649065.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298380719|ref|ZP_06990318.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|331652950|ref|ZP_08353955.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331683077|ref|ZP_08383678.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] gi|257753959|dbj|BAI25461.1| predicted phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|257764420|dbj|BAI35915.1| predicted phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|291427281|gb|EFF00308.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298278161|gb|EFI19675.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|320646852|gb|EFX15716.1| transcriptional repressor DicA [Escherichia coli O157:H- str. 493-89] gi|320663403|gb|EFX30700.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. USDA 5905] gi|331049048|gb|EGI21120.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331079292|gb|EGI50489.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] Length = 135 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 2/110 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 4 KTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTW 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ +D + D L++ R + + + + ++ EL Sbjct: 64 ILFGDEDKTPAPPVSLDSALDL--SEDELEMLRLYRALPKSEQQAQLSEL 111 >gi|168183950|ref|ZP_02618614.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672974|gb|EDT84935.1| transcriptional regulator [Clostridium botulinum Bf] Length = 92 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R R ++QE+LG+ L ++ Q V YEKG N L I+ + + + Sbjct: 3 GDRLRELREEKQLTQEELGKLLNVSRQAVSSYEKGENEPTIDALVKIANIFNVSLDYL 60 >gi|161505000|ref|YP_001572112.1| hypothetical protein SARI_03130 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866347|gb|ABX22970.1| hypothetical protein SARI_03130 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 94 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R+ R + MSQE L G++ ++ YE G +R + ++ VL P + Sbjct: 4 KRLRIARELADMSQEDLAAAAGVSEETGSSRISHYEHGRHRPKFELVCQLARVLNVPEGY 63 Query: 73 FFDVSPTVCS 82 F+ + + Sbjct: 64 FYTLDDSFAE 73 >gi|326388802|ref|ZP_08210386.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206712|gb|EGD57545.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] Length = 395 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+ R G+S L + +G++ Q + KYE + +++ L+ P +F Sbjct: 8 FVGARLTEARKARGISATDLADMVGVSVQSISKYENDRQSPKLDVVHNLAATLKFPHDYF 67 Query: 74 FDVSPTVCS 82 +P Sbjct: 68 LRPTPERDE 76 >gi|312126619|ref|YP_003991493.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776638|gb|ADQ06124.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 118 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 37/71 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R G +QE++ + LGIT +Q+ YE G + + LQ ++ + ++ Sbjct: 9 IGEKLRELRKQRGFTQEQVAKYLGITQEQLSYYETGAREISVATLQALARLYGCDYNYLL 68 Query: 75 DVSPTVCSDIS 85 + + ++ Sbjct: 69 SDDEQLNTQVA 79 >gi|311068514|ref|YP_003973437.1| putative Xre family transcriptional regulator [Bacillus atrophaeus 1942] gi|310869031|gb|ADP32506.1| putative transcriptional regulator (Xre family); phage SPbeta [Bacillus atrophaeus 1942] Length = 108 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G SQ+++ + LGIT Q KYE G + L +S +L F Sbjct: 4 ERLKKCRTSKGYSQQQMADFLGITRQGYGKYETGKAEPDLTTLTKLSNILGVSTDFLLKG 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + + ++ + +S P+ L Sbjct: 64 --------THAQFDLDEILSDPETL 80 >gi|218290870|ref|ZP_03494934.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239137|gb|EED06339.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 161 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 10/128 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+RL R + +QE+ G L ++ V YE GV A L I+++ + + + Sbjct: 9 SRLRLLRQMKNWTQEEFGRKLNVSKVTVSSYESGVRTPDAKTLIKIADLFDVSVDYL--- 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + E + + + D +L F + + + +++L R + E++ + Sbjct: 66 ---LGRTDGKNEGYTSEVLVSEDEKELLERFRNLSENDA-KVLLQLARVL---ERRGQIS 118 Query: 137 EEECMVEQ 144 +E V Q Sbjct: 119 DELSPVTQ 126 >gi|291551194|emb|CBL27456.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 170 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I L+R ++QE+L E LG++ + + K+E G S ++ + E LE ++ D Sbjct: 23 GKFIALKRKQKNLTQEQLAEKLGVSNKTISKWETGKCMPDYSIVKSLCEELEVTVAELMD 82 Query: 76 VSPTVCSDISS-EENNVMDFISTPDGLQ 102 + + + + ++ ++D + L+ Sbjct: 83 GEISEENSVRTYDDEQILDLLRRTQELE 110 >gi|322375904|ref|ZP_08050415.1| putative repressor protein [Streptococcus sp. C300] gi|321279172|gb|EFX56214.1| putative repressor protein [Streptococcus sp. C300] Length = 228 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 50/120 (41%), Gaps = 26/120 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYFTQ- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + + + K++ R++ E+ + Sbjct: 64 ------------------------IEIVRLYNSL-SKQGKDKVVLYARNLAQEEQTQKVA 98 >gi|300856997|ref|YP_003781981.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437112|gb|ADK16879.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 120 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R++ R G SQE+L E LG+T Q + K+E + + +SE+ + Sbjct: 1 MSISERLQKLRKHEGYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDY 60 Query: 73 FFDVSPTVCSDISSEENN 90 + I Sbjct: 61 LLKGEEQISKPIEINSKE 78 >gi|163761537|ref|ZP_02168609.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43] gi|162281251|gb|EDQ31550.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43] Length = 216 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ +G +R R LG++ L G++ + K E G + LQ +S L Sbjct: 27 NNLERAIGHEVRAYRKKLGITVTDLSAATGVSIGMLSKIENGNISPSLTTLQSLSRALGV 86 Query: 69 PISFFFDVSPTVCSDI 84 P++ FF + Sbjct: 87 PVTAFFKGFEEPRNAT 102 >gi|291548789|emb|CBL25051.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 294 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + I+ R GMSQE++ L + Q V K+EKG++ A L ++ +L+ +S Sbjct: 2 INENIKHFRKTRGMSQEEMAVKLNVVRQTVSKWEKGLSIPDADVLIEMANLLDVSVSQLL 61 Query: 75 --DVSPTVCSDISSEENNVMDFISTP 98 + S +++ E + + ++ Sbjct: 62 GIEESIHSNGNLAEELAELNEQLARK 87 >gi|116751481|ref|YP_848168.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700545|gb|ABK19733.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 432 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G R++ R G+SQ +L + +G+T + + E + L ++EVL IS Sbjct: 251 IDLGLRLKELRTKRGISQTELAKSVGVTPSTISQVESNLIYPSLPALMKMAEVLSVDISS 310 Query: 73 FFDVSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 FF S+ E+ + F P+G R ID Sbjct: 311 FFQERLAGKKKFVFSAMESLQVKFADFPEGSIYARALTPIDSD 353 >gi|270307510|ref|YP_003329568.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] gi|270153402|gb|ACZ61240.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] Length = 72 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G+RIR R G+SQE+L + G+ + E+G + IS+ L+ P+ Sbjct: 7 IEQRFGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISKALKVPV 66 Query: 71 SFFF 74 S F Sbjct: 67 SDLF 70 >gi|260550789|ref|ZP_05824996.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406099|gb|EEW99584.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 210 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + + + V +VG IR R G+SQ++L + G++ + + E G + ++L Sbjct: 24 LTYSMSQSSTVLQHVGTNIRSLRDERGLSQQELADQAGVSRRTIAALETGQVNISLAKLD 83 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 I+ VL F + NV+ + + Sbjct: 84 AIAIVLGVN----FRTIVSAPEHKEHALVNVLAWQGEKE 118 >gi|197285329|ref|YP_002151201.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194682816|emb|CAR43084.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 111 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G + L R M+ +LG+ L I+ QQ+ +YE+G+N++ L HI + + IS FF Sbjct: 23 IGYELFLLRQRNSMTGAELGKLLNISQQQISRYERGINKIPIDILFHILNIFDISISDFF 82 Query: 75 D 75 + Sbjct: 83 E 83 >gi|302337267|ref|YP_003802473.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634452|gb|ADK79879.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 222 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V++ +G RIR +R M +L E G+T + + E+ + + L+ I + + PI Sbjct: 10 VNLTLGSRIRAQRNKHNMKISELAELTGLTSSTISQVERALISPSIATLKKICDAMNIPI 69 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 SF FD +D SEEN V Sbjct: 70 SFLFDG--VEENDSQSEENVVTQ 90 >gi|289168188|ref|YP_003446457.1| transcriptional regulator [Streptococcus mitis B6] gi|288907755|emb|CBJ22592.1| transcriptional regulator [Streptococcus mitis B6] Length = 287 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ R++R LG+SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +F Sbjct: 4 LSEKFRVKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYF 61 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 F+ V S++S + + + L Y +I+ Sbjct: 62 FNEQIEVKSNLSHFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|302342128|ref|YP_003806657.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638741|gb|ADK84063.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 432 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R G+SQ L + +G+T + + E L ++EVL I+ FF Sbjct: 253 LGKRIKELRGKKGLSQTDLAKMVGVTPSTISQVESNHIYPSLPALIKMAEVLSVEIASFF 312 Query: 75 DVSPTVCSDI--SSEENNVMDFISTPDGLQLNRY 106 + + S+EE + + P G R Sbjct: 313 NDGAEDRQRVVFSAEEAVEVKLVDMPAGA--VRA 344 >gi|154499861|ref|ZP_02037899.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] gi|150271459|gb|EDM98716.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] Length = 409 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 5/106 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI R G+SQE LGE +G++ Q V K+E + +S V ++ Sbjct: 1 MTLGQRIAALRKEKGLSQEGLGELVGVSRQAVSKWEADKTVPDVNNCIAMSRVFGISLAG 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY-FIQIDDVKVRQ 117 +V ++ + + + L + + + + R+ Sbjct: 61 LLEVEESLGDGAERTGGEQL----SEEQLAMVEAVVTRYLEKRKRR 102 >gi|268592700|ref|ZP_06126921.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291311842|gb|EFE52295.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 112 Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N I G IR R G+S +L + + ++ QQ+ +YE+G+N++ L ++S L+ Sbjct: 16 NLFSIYCGLVIRKIRKENGISACELAKQVNVSQQQMSRYERGINKISIDMLFNLSVALDC 75 Query: 69 P 69 P Sbjct: 76 P 76 >gi|240948468|ref|ZP_04752844.1| transcription regulator [Actinobacillus minor NM305] gi|240297209|gb|EER47771.1| transcription regulator [Actinobacillus minor NM305] Length = 239 Score = 65.2 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 4/101 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR +R LG+S+ ++ + L ++ +Q +E AS + I+E L ++ Sbjct: 11 IGNRIREQREKLGLSRNEMADRLDVSLSALQNWEMNEREPQASMIIKIAEFLGVAPNYLL 70 Query: 75 DVSPTVCSDISSEENNVMDFI----STPDGLQLNRYFIQID 111 + + + + + D +++ F I+ Sbjct: 71 TGEQSQPQEAKGIVARAFEALEKERTEQDEVEMLSSFESIE 111 >gi|260438757|ref|ZP_05792573.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292808744|gb|EFF67949.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 267 Score = 65.2 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 37/79 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE L E + +T Q + K+E G + + +S++ + Sbjct: 1 MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFSVSSDY 60 Query: 73 FFDVSPTVCSDISSEENNV 91 T ++ ++ N Sbjct: 61 LIKDEMTEPDELPYKKRNY 79 >gi|323140527|ref|ZP_08075454.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414979|gb|EFY05771.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 71 Score = 65.2 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R++ + Q L E +GIT Q + K E G R + I++ L+ +S Sbjct: 7 VEMGRKIRYYRIMQELGQGMLAEQIGITPQYLSKIEHGSARPSMDLVFRIADKLQVKVSH 66 Query: 73 FFD 75 + Sbjct: 67 LLE 69 >gi|153955926|ref|YP_001396691.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856268|ref|YP_002473390.1| hypothetical protein CKR_2925 [Clostridium kluyveri NBRC 12016] gi|146348784|gb|EDK35320.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569992|dbj|BAH07976.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 200 Score = 65.2 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ L R MSQ +L E LG+T Q + KYE G L+ +S + I + Sbjct: 70 NRLSLLRKSHNMSQAELAEKLGVTQQTISKYENGSREPDTETLKLLSSIFNVSIDYLLGA 129 Query: 77 SPTVCSDIS 85 + D + Sbjct: 130 TNIRNHDTT 138 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G++++ RM M+Q++L + L I+ + YE+ L+ I++ + + Sbjct: 3 GEKLKKLRMDKNMTQQELAKILKISSSTIGMYEQNRRSPDIETLKLIADYFQCSTDYL 60 >gi|227892270|ref|ZP_04010075.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227865911|gb|EEJ73332.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 220 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 15/116 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I R +Q L E LGIT Q V K+E G + AS + + ++L+ ++ Sbjct: 23 IGKFIAKCRKEQNFTQANLAEKLGITNQAVSKWENGKSMPDASLMLELCQLLKISVNELL 82 Query: 75 DVSPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + D E N+++ + +K++ R + + Sbjct: 83 NGEKIIMKDYKKIAEQNLIELEKQKEMAD--------------KKLLTTARVLATM 124 >gi|104783607|ref|YP_610105.1| hypothetical protein PSEEN4650 [Pseudomonas entomophila L48] gi|95112594|emb|CAK17322.1| conserved hypothetical protein; putative DNA-binding [Pseudomonas entomophila L48] Length = 360 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R G+S + LG+ +G++ ++KYE + + L + + L +FF Sbjct: 2 IGERLKRARAAAGLSMQALGDQVGVSANMIKKYEHDQSMPSSGVLVRLCKALSVRAEYFF 61 >gi|150018438|ref|YP_001310692.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904903|gb|ABR35736.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 8/86 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G+SQEKL E LGI+ Q V K+E G + +RL +SE + I + Sbjct: 5 EQLQTLRKAKGLSQEKLAEFLGISRQSVAKWEVGQSYPDIARLIALSEFFKVSIDKLVND 64 Query: 77 SPTVCSDISSEEN-------NVMDFI 95 C +S EEN N++DF+ Sbjct: 65 YEENCR-LSIEENKVNNINRNIIDFL 89 >gi|226325615|ref|ZP_03801133.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758] gi|225205739|gb|EEG88093.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758] Length = 279 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ + L ++ V K+EKG S L I+ +L+ ++ Sbjct: 1 MQIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNTYPDISLLPAIARLLKIDMNE 60 Query: 73 FFDVSPTVCS 82 F + Sbjct: 61 LFSFREELTE 70 >gi|154501006|ref|ZP_02039044.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] gi|150270030|gb|EDM97549.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] Length = 297 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 39/81 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R GM+Q++L + L IT + V K+E+G+ S L+ ++E L + Sbjct: 7 GQLIRDLRKEKGMTQKELADKLHITDRAVSKWERGLCAPEISLLEPLAEALGCSVLDLMA 66 Query: 76 VSPTVCSDISSEENNVMDFIS 96 T + S EE D + Sbjct: 67 GERTAKAADSQEEARTRDVLH 87 >gi|317120863|ref|YP_004100866.1| hypothetical protein Tmar_0014 [Thermaerobacter marianensis DSM 12885] gi|315590843|gb|ADU50139.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 131 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--- 74 R+R R G++Q +L +G++ Q + YE G + +Q ++ VL + IS+ Sbjct: 6 RLRKMREARGLTQRELATAIGVSRQAIGLYEAGEREPDLTTIQKLAHVLRTSISYLVGET 65 Query: 75 -DVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQID---DVKVRQK 118 D SP S +++ E + D + L + R F +I + K RQ+ Sbjct: 66 DDPSPLPRSGVAAHREGTDPGDPLDPEVQLIMERAFREISRKLEEKWRQR 115 >gi|331087042|ref|ZP_08336117.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409492|gb|EGG88935.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 296 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R MSQE+L L + Q V K+E ++ A L ++EVL ++ Sbjct: 2 LGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAELL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 S+ S E ++ + L Sbjct: 62 GTDEQPHSESLSAETLAIELARLNEELA 89 >gi|325663518|ref|ZP_08151928.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470417|gb|EGC73648.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] Length = 296 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R MSQE+L L + Q V K+E ++ A L ++EVL ++ Sbjct: 2 LGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAELL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 S+ S E ++ + L Sbjct: 62 GTDEQPHSESLSAETLAIELARLNEELA 89 >gi|167761576|ref|ZP_02433703.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] gi|167660719|gb|EDS04849.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] Length = 476 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 5/104 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I RR SQE + +G++ Q V K+EK ++ + ++E+L + Sbjct: 6 MSLGKNIASRRKSQNFSQEDIATLVGVSRQAVSKWEKDLSSPSTENIIRLAEILRVSVEE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN---RYFIQIDDV 113 P + + +S L L R FI++ + Sbjct: 66 LTGGRPAAAGRDREDRSVYR--VSDSRYLWLLIKDRLFIRLANP 107 >gi|291456538|ref|ZP_06595928.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] gi|291381815|gb|EFE89333.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] Length = 137 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R + GM+Q +L E +G+T V+ YE G+ V L+ I++ L ++ Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIADTLGVSVNA 60 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPDGLQLN 104 D D+ S E++ + + GL LN Sbjct: 61 LKDYGVENAGDLMSLLVRLEDSFGIVPAADGAGLSLN 97 >gi|166032918|ref|ZP_02235747.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] gi|166027275|gb|EDR46032.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] Length = 298 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I +R LGM+Q++L E LG++ + V K+E+GV S + + +L ++ Sbjct: 4 IKIGKYIASKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSILGISLNE 63 Query: 73 FFDVSPTVCSD-ISSEENNVMDFIST 97 F + I E N+++ I Sbjct: 64 FLAGEDIAQENLIQKSETNIIEVIKD 89 >gi|116617221|ref|YP_817592.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096068|gb|ABJ61219.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 240 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G++Q++ E L I+FQ V +E+ + I E + P+ Sbjct: 1 MEIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKGHPTTEMMLLIIEKFDLPLD- 59 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 FF + PT + + EE ++ F++ Sbjct: 60 FFIIPPTNSCEDNDEELILLSFLAN 84 >gi|291535748|emb|CBL08860.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Roseburia intestinalis M50/1] gi|291538243|emb|CBL11354.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Roseburia intestinalis XB6B4] Length = 334 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 5/106 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E L ++ Q V K+E + R+ +SE+ + Sbjct: 1 MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEIFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I E + DF ++ F+ +VR+K Sbjct: 61 LLKDECETPQPIEGVEPSDKDFPLKKVSVEDANDFM-----EVRKK 101 >gi|54022032|ref|YP_116274.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54013540|dbj|BAD54910.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 202 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR RR LG+ Q +L E +G+T +Q+ +YE G AS + ++ L + F Sbjct: 5 IGEIIRDRREALGLGQRELSERVGVTERQIGRYESGAQEPAASTCRLLARALHLSFAQLF 64 Query: 75 DVSP 78 P Sbjct: 65 GEVP 68 >gi|306824522|ref|ZP_07457868.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433309|gb|EFM36279.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 228 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 53/121 (43%), Gaps = 26/121 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + ++L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLEKILKVAKGYFTQ- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + + + K++ R++ E+ + + Sbjct: 64 ------------------------IEIVRLYNSL-SKQGKDKVVLYARNLAQEEQAQKVM 98 Query: 137 E 137 + Sbjct: 99 D 99 >gi|293397473|ref|ZP_06641725.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291420052|gb|EFE93329.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 138 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 15/117 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ G +QE+L E +GI + ++ YE G S + I+ +L+ P + Sbjct: 22 KRLKYARISNGYTQEQLAELVGIQGANSSSRLSSYEVGRTEPPFSLVVKIANLLDYPEYY 81 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQKIIELVRSIV 127 F+ + + SD+ N + F I++ K+ +K+ E + + Sbjct: 82 FYTIDDDLASDLLEMHRNRTNPTKNK--------FYSSVIEEKKLSKKVDE-AKRLA 129 >gi|212709326|ref|ZP_03317454.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens DSM 30120] gi|212688238|gb|EEB47766.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens DSM 30120] Length = 112 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 32/71 (45%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K N +GK +R R G S K+ + LGI+ Q +YE G R+ L I Sbjct: 8 SKPESNIYSFIIGKELRCIRKRKGFSGAKIAKQLGISQQHYSRYECGKCRISVDTLLSIL 67 Query: 64 EVLESPISFFF 74 VL+ FF Sbjct: 68 FVLDFDFGDFF 78 >gi|78222436|ref|YP_384183.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193691|gb|ABB31458.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 173 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 3/97 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ ++G+ ++ R ++Q+ L + G+ + + K E+G L +S L Sbjct: 30 PLSCDIGRELKRLRKDRELTQKDLAARVDGGLDYTYIGKIERGEQLPSLKMLMGLSAALG 89 Query: 68 SPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQL 103 P+S FF + SP S + +++V + QL Sbjct: 90 VPVSHFFQEESPATNSPLRMADSDVKSMELHKELRQL 126 >gi|269122513|ref|YP_003310690.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268616391|gb|ACZ10759.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 127 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++GKRI+ RR LG +QE+L E +G + + K E G+N + S++ +++L++ S Sbjct: 1 MSIGKRIKKRREELGYTQEQLAEKMGYKSKSTINKIEAGINDITQSKITAFAKILKTTPS 60 Query: 72 FFFDVSPTVCS 82 + Sbjct: 61 YLMGWEDEESE 71 >gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] Length = 110 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G+SQ LG+ LG+ Q + +E G + + + E L+ P+ +F + Sbjct: 15 EKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSEPNLKTINKLCEALDVPLRYFIN- 73 Query: 77 SPTVCSDISSEENNVMD 93 V ++ EE V++ Sbjct: 74 EERVDYQLTLEEAFVIN 90 >gi|308273674|emb|CBX30276.1| hypothetical protein N47_D30850 [uncultured Desulfobacterium sp.] Length = 433 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ +D +G R++ R G SQ +L + +G+T + + E L I+E Sbjct: 246 KRTQTQLD--LGTRLKEIRSKRGFSQTELAKLIGVTSSTISQIESNQIYPSLPALIKIAE 303 Query: 65 VLESPISFFFDVSPTVCSDI 84 L IS FF TV + Sbjct: 304 TLSVKISSFFGELDTVSEQV 323 >gi|254390107|ref|ZP_05005328.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326441822|ref|ZP_08216556.1| helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|197703815|gb|EDY49627.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 420 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 10/120 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R G+SQE+L E G++ VQK E+G V L I+ L S F Sbjct: 5 IGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 64 Query: 75 DVSP--TVCSDISSEENNVM--DFISTPDGLQ--LNRYFIQIDD-VKVRQKII---ELVR 124 P V D +++++ V + P G+ L ++ D +R++++ +L R Sbjct: 65 VAGPPEPVVGDDATKQSLVAIRAALMPPIGIDGVLVASVPKVGDLSALRRRVLAIHDLYR 124 >gi|169826912|ref|YP_001697070.1| hypothetical protein Bsph_1332 [Lysinibacillus sphaericus C3-41] gi|168991400|gb|ACA38940.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 180 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L I EVL S Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 73 FFDVSPTVCSDISSEEN 89 FFD + +EE+ Sbjct: 61 FFDDESPEQKVVYTEED 77 >gi|149013606|ref|ZP_01834177.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|147762797|gb|EDK69752.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|301793448|emb|CBW35821.1| Transcriptional regulator [Streptococcus pneumoniae INV104] Length = 288 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L MSQ +L E GI Q Q+ + E G GA L +++ L+ + +FFD Sbjct: 8 RLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSMDYFFDE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + SE + T + +Y ++++VK Sbjct: 66 QVVEKVEELSEFKKLAQTFITNRNYESLKYIYELENVK 103 >gi|57235098|ref|YP_182252.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57225546|gb|AAW40603.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 72 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G+RIR R G+SQE+L + G+ + E+G + IS L+ P+ Sbjct: 7 IEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALKVPV 66 Query: 71 SFFF 74 S F Sbjct: 67 SDLF 70 >gi|331265721|ref|YP_004325351.1| transcriptional regulator, putative [Streptococcus oralis Uo5] gi|326682393|emb|CBZ00010.1| transcriptional regulator, putative [Streptococcus oralis Uo5] Length = 228 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 50/119 (42%), Gaps = 26/119 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEGLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYFTQ- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +++ R + + + + K++ R++ E+ + Sbjct: 64 ------------------------IEIVRLYNSL-SKQGKDKVVLYARNLAQEEQTQKV 97 >gi|290968677|ref|ZP_06560215.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] gi|290781330|gb|EFD93920.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] Length = 226 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 3/82 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 VGKRI+ +R M+ + + LG+T VQ+YE G ++ V LQ I ++L +F Sbjct: 10 VGKRIKKQRKQNNMTLKDIAVKLGVTESTVQRYETGNISNVSIEMLQKIGKILLVSPAFL 69 Query: 74 F--DVSPTVCSDISSEENNVMD 93 D + V SD+ + ++ +D Sbjct: 70 LGWDSAEKVVSDLEAHKHKFLD 91 >gi|225390137|ref|ZP_03759861.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] gi|225043790|gb|EEG54036.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] Length = 194 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G++Q +L + I+ Q V K+E+G+ S L +SEVL Sbjct: 4 VKIGKLIRALRKDQGLTQRQLAAAMNISEQAVSKWERGLGFPDVSLLPELSEVLGVSP 61 >gi|293376878|ref|ZP_06623096.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644488|gb|EFF62580.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 330 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R GMSQE+L LG+T Q + +E+G+ + L ++ + E+ + Sbjct: 5 QLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDL--- 61 Query: 74 FDVSPTVCSDISSEENNV 91 D + SDI E + Sbjct: 62 -DGLIGIKSDIKEEPVEL 78 >gi|291521206|emb|CBK79499.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 128 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIR RR+ L M Q +L E + I+ + E+G+ R G I +VL+ + Sbjct: 9 VEMGKRIRTRRLSLKMKQMELAEEVDISNNHISSIERGIERPGLDSFIRICDVLDVTPDY 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 S + + +N+ + T + ++L Sbjct: 69 LLLGSMKSNNVPKNITDNLK--LCTDEEIRLVEA 100 >gi|158522276|ref|YP_001530146.1| XRE family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511102|gb|ABW68069.1| transcriptional regulator, XRE family [Desulfococcus oleovorans Hxd3] Length = 433 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R GMSQ L +G+T + + E L +SE+L + +FF Sbjct: 253 LGLRIKELRTKKGMSQVALARGIGVTPSTISQVENNQIFPSVPALIKMSEILSVDVGYFF 312 Query: 75 DVSPTVCSDISSEENNVM 92 + E M Sbjct: 313 QTGAGSAPRVVFSEFEAM 330 >gi|219856265|ref|YP_002473387.1| hypothetical protein CKR_2922 [Clostridium kluyveri NBRC 12016] gi|219569989|dbj|BAH07973.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 108 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G R+ R + +SQ KL L + + K EKG + L I E +S Sbjct: 6 IDIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITLSE 65 Query: 73 FFDVSPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQ 109 FF+ I + + +N D TP+ L+L FI+ Sbjct: 66 FFNNGNNSEPVILNPQLKELLDNAKDL--TPEQLELLSKFIK 105 >gi|268611043|ref|ZP_06144770.1| transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 78 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R ++Q +L E L ++ V KYE G R+ I+++ + + + Sbjct: 10 GKRIKALRKKNNLTQCQLAELLHMSRSTVLKYETGRQIPPVDRICDIADIFDVSTDYLYG 69 Query: 76 VSP 78 VS Sbjct: 70 VSD 72 >gi|313885249|ref|ZP_07819001.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619940|gb|EFR31377.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 371 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I++ R G++QE L E LG+T V K+E+G L I++ + + F Sbjct: 7 VGPQIKIFRKQKGLTQEALAEALGVTVSAVSKWERGQTLPDLPTLLEIAQFFQISLDVLF 66 >gi|319637930|ref|ZP_07992696.1| XRE family Transcriptional regulator [Neisseria mucosa C102] gi|317401085|gb|EFV81740.1| XRE family Transcriptional regulator [Neisseria mucosa C102] Length = 86 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R + R ++QEKLG +G + ++ +YEKG ++ + LQ I+EVLE P +F Sbjct: 9 RRFKEARKAKNLTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLQKIAEVLEVPPAF 68 Query: 73 FFDVSP 78 FF Sbjct: 69 FFSDDE 74 >gi|160945921|ref|ZP_02093147.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] gi|158443652|gb|EDP20657.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] Length = 169 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 32/57 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++I+ R +G+SQEKL E +G++ Q + K+E G+ ++ +SE + + Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDYL 68 >gi|134298741|ref|YP_001112237.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051441|gb|ABO49412.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 77 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ R G+SQ +L +G+T + K E G L+ I+ L+ ++ Sbjct: 5 IQLGHKIKNLREKKGLSQVQLAHMVGVTNSLICKIETGQTSGSIHTLKKIANKLDVSVNI 64 Query: 73 FFDVSPTV 80 FF+ +V Sbjct: 65 FFEDDSSV 72 >gi|315611793|ref|ZP_07886715.1| hypothetical transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315316208|gb|EFU64238.1| hypothetical transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 228 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 50/120 (41%), Gaps = 26/120 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLENILKVARGYFTQ- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + + + K++ R++ E+ + Sbjct: 64 ------------------------IEIVRLYNSL-SKQGKDKVVLYARNLAQEEQTQKVA 98 >gi|326797834|ref|YP_004315653.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326548598|gb|ADZ76983.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 130 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L LG++ Q V EK + A L ++ +L Sbjct: 9 HIGRKISRIRELRGMKQEALAIELGVSQQTVSNMEKSAA-IEADLLAQVASILGV----- 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + N+++ N Y I+ + KI+EL ++ +EK+ Sbjct: 63 --TTEAIENFSEEAVFNIINNTFQDSSSNNNNYLCTINPL---DKIVELYERLLEAEKEK 117 Query: 134 RTIEEECMVEQ 144 T + + E+ Sbjct: 118 NTYLGKLLEER 128 >gi|291548676|emb|CBL24938.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 129 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RI+ RR LGMSQE+L +G + + K E G+ + S+++ I++ L++ + Sbjct: 1 MTIGERIKARRDELGMSQEELAHKIGYKSKTSINKIELGIQELRQSKIKQIADALQTTPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + T + + D + ++ + D + + ++ S++S+EK Sbjct: 61 YIMGWKETEEDQQLKKCRELFKKCHGSDAYDVVSLYLTL-DESDKNVVKTMIESLLSAEK 119 >gi|166032287|ref|ZP_02235116.1| hypothetical protein DORFOR_01990 [Dorea formicigenerans ATCC 27755] gi|166028010|gb|EDR46767.1| hypothetical protein DORFOR_01990 [Dorea formicigenerans ATCC 27755] Length = 351 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ + L ++ V K+EKG S L I+ +L+ ++ Sbjct: 1 MQIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNTYPDISLLPAIARLLKIDMNE 60 Query: 73 FFDVSPTVCS 82 F + Sbjct: 61 LFSFREELTE 70 >gi|225861745|ref|YP_002743254.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298229349|ref|ZP_06963030.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255903|ref|ZP_06979489.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503691|ref|YP_003725631.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A] gi|225726429|gb|ACO22280.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298239286|gb|ADI70417.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A] Length = 287 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R LG+SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRN-YDNLEYIYRIE 98 >gi|114326843|ref|YP_744000.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315017|gb|ABI61077.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P ++ +G ++R R LG++ L ++ + K E G + LQ +S L Sbjct: 37 PASLEAAIGAKVRRLRQRLGITAADLAVEADLSAGMLSKIENGSTSPSLATLQALSRALN 96 Query: 68 SPISFFFDVSPT 79 +PIS FF Sbjct: 97 TPISSFFSDFDE 108 >gi|295107448|emb|CBL04991.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R GM+Q +L E +G+T V+ YE G+ V L+ IS L ++ Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESISAALGVSVNA 60 Query: 73 FFDVSPTVCSDISS 86 D D+ S Sbjct: 61 LKDYGVETAGDLMS 74 >gi|261823599|ref|YP_003261705.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607612|gb|ACX90098.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 108 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R++ G+SQ+ LG G + ++ +YEKGV Q ++E L+ P+++ Sbjct: 13 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVYEASIETAQQLAEALDVPLAY 72 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F+ + + ++ F+ + K R +I+ LVR Sbjct: 73 FYTEND--------------------ELAEMMLAFLALSPEK-RAEILALVR 103 >gi|261346297|ref|ZP_05973941.1| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282565609|gb|EFB71144.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 113 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R + G S K+ + LG++ Q +YE G R+ L +L+ S FF+ Sbjct: 20 GRELRRIRKMKGFSGAKIAKQLGVSQQHYSRYECGKCRISIDTLLISLAILDFDFSDFFN 79 Query: 76 VSP 78 Sbjct: 80 EMK 82 >gi|291532130|emb|CBK97715.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 106 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R++ R+ GM+QE+L E + +T + YE + I+ V + Sbjct: 2 VKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDY 61 Query: 73 FFDVSPTVCS--DISSEENNVMDFISTPDGL 101 F + DIS + F+ + L Sbjct: 62 LFGLEDKRSRTLDISGLCEEDIRFLQSAAAL 92 >gi|257438372|ref|ZP_05614127.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199203|gb|EEU97487.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 119 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 16/123 (13%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +G+++R R + G++QE+L E ++ + + EKG L I+ +L Sbjct: 2 MPNSDLKVLGEKVRKERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARIL 61 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S + + + E + +F NR ++ + VR+ +++ R++ Sbjct: 62 --PVS----LDALITPGMGKTEIELKEF---------NRIYLSCPEA-VRETLMDSTRTL 105 Query: 127 VSS 129 Sbjct: 106 AKH 108 >gi|222530625|ref|YP_002574507.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457472|gb|ACM61734.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 118 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ R G +QE++ + LGIT +Q+ YE G V L ++ + ++ Sbjct: 9 IGKRLQELRKQRGFTQEQVAKYLGITQEQLSHYENGKREVSVDILLQLARLYGCDYNYLL 68 Query: 75 DVSPTVCSDIS 85 I+ Sbjct: 69 GEEQNTDEQIT 79 >gi|153953935|ref|YP_001394700.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854549|ref|YP_002471671.1| hypothetical protein CKR_1206 [Clostridium kluyveri NBRC 12016] gi|146346816|gb|EDK33352.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568273|dbj|BAH06257.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 179 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 39/92 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +IR R +S E+L E ++ + + E+ + + L I++ L I++ Sbjct: 1 MEFGLKIRKLRQEKSISIEQLAERAKLSTGLISQVERNITGPSVTTLWKIAKALNVSINY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FFD + + ++ + + +L Sbjct: 61 FFDEYEEKDNVVRKDKRKTIILPDSKITYELL 92 >gi|284009381|emb|CBA76570.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+RIRLRR L ++Q++LG+ +G++ + ++EK L +++ L + Sbjct: 4 KSIGERIRLRRKELELTQKQLGKRVGVSHVAISQWEKEETEPKGDNLLSLADALMCTAEY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + ++ + L F + + + + + E+ + + E+ Sbjct: 64 ILRGTTSEKPIRCDNDTYKYSRLTKREE-NLLEMFNALTEDEQKNYLKEITETRANLERI 122 Query: 133 Y 133 Y Sbjct: 123 Y 123 >gi|296450909|ref|ZP_06892658.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296878611|ref|ZP_06902616.1| helix-turn-helix domain protein [Clostridium difficile NAP07] gi|296260281|gb|EFH07127.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296430418|gb|EFH16260.1| helix-turn-helix domain protein [Clostridium difficile NAP07] Length = 258 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G+SQE L E +G T Q + K+E +L +S + E + Sbjct: 1 MSLGEKIFKLRKEKGISQEALAEQIGTTRQAISKWENNQGFPETEKLLQLSNIFEVSTDY 60 Query: 73 FFDVSPTVCS 82 V + Sbjct: 61 LLKDEKNVKN 70 >gi|310644824|ref|YP_003949583.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309249775|gb|ADO59342.1| Transcriptional regulator [Paenibacillus polymyxa SC2] Length = 114 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G +QE+L E G+ + + E+G + L+ I L+ P F Sbjct: 7 VGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALKVPPFELF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 T D N +M I++ + +L Sbjct: 67 QFDETT--DRKQIINELMLLINSRETTEL 93 >gi|218516214|ref|ZP_03513054.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 89 Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 31/43 (72%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G Sbjct: 47 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGK 89 >gi|311031583|ref|ZP_07709673.1| transcriptional regulator [Bacillus sp. m3-13] Length = 295 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I++ R L +SQ +L E + T Q+ K EKG A+ L +I+E L I++F+ Sbjct: 6 IGKEIKVLRSALNLSQAELSEGI-CTQSQISKIEKGEVFPLANTLYYIAERLGVDINYFY 64 Query: 75 DVS 77 D++ Sbjct: 65 DLA 67 >gi|206559569|ref|YP_002230330.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198035607|emb|CAR51494.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 122 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 52/108 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK I +R+ G++QEK+ E LGI + V + E+G RL ++++ + Sbjct: 11 VAVGKAIAKQRIASGLTQEKVAERLGIGLEAVSRMERGTVIPTVVRLFELADIFACDAAD 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + SD +S N ++ +ST D L F ++ R++ + Sbjct: 71 LLTEASNRSSDQASHLNRLLSRLSTSDRAMLLEVFERLSTRLTRRETV 118 >gi|94986009|ref|YP_605373.1| hypothetical protein Dgeo_1909 [Deinococcus geothermalis DSM 11300] gi|94556290|gb|ABF46204.1| Zn peptidase and DNA-binding HTH-like domain [Deinococcus geothermalis DSM 11300] Length = 376 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R G+S E LGE +G++ Q + K E V+ I + L+ P FF+ Sbjct: 9 GWRLKQAREAYGLSLESLGELVGVSKQAISKMENDVSEPSPEVFLKICQSLKRPAEFFYS 68 Query: 76 VSPTVCSD 83 ++ Sbjct: 69 SESADFTN 76 >gi|50122315|ref|YP_051482.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] gi|49612841|emb|CAG76291.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] Length = 133 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI R G++Q +L E LG++ Q VQ +E G R+ S L ++++ + Sbjct: 24 MALGERITTLRKERGITQAELAEKLGVSQQTVQAWEAGRRRIKVSSLPSVAQIFSVSLEE 83 Query: 73 FFDVSPTVC 81 F +P Sbjct: 84 VFGEAPEPA 92 >gi|312862721|ref|ZP_07722961.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322516899|ref|ZP_08069796.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|311101581|gb|EFQ59784.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322124522|gb|EFX96004.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSILAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK-IIELV 123 V + E N + L+L + ++ + + ++ +I L Sbjct: 64 EHEIVEVYLELNEEN------RQEALRLTKALLEEQEAEKQKAPVISLY 106 >gi|262373689|ref|ZP_06066967.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] gi|262311442|gb|EEY92528.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] Length = 183 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P+ V VG+ IR R +SQ++L E G++ + + E G+ + ++L I+ Sbjct: 2 NHPDAVLQYVGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVNISLTKLDAIANA 61 Query: 66 LES 68 L+ Sbjct: 62 LDV 64 >gi|254502876|ref|ZP_05115027.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438947|gb|EEE45626.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 182 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 7/111 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I+ R+ GMS L + G+ + + E G L I+ L P SF F Sbjct: 7 IAKAIQRERLKAGMSLSALAKTAGLAKSTLSQLEAGQGNPSVETLWAIASALNVPFSFLF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + T + I + E + + L R+ +L R+ Sbjct: 67 ETGTTDKTLIRAGEGEPVASEAAGFTAVLLAN----CPPGRRR---DLYRT 110 >gi|210634420|ref|ZP_03298108.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] gi|210158823|gb|EEA89794.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] Length = 351 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR LGM+QE++ + LG++ V K+E+G+ + + ++ + E+ + Sbjct: 1 MHISEIIRSRRRELGMTQEQVAQRLGVSAPAVNKWERGICYPDITLIPSLARLFETDANT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 P + + S +D + +G + Sbjct: 61 LLSFEPELREEESLAIQREVDRLVREEGYE 90 >gi|312144436|ref|YP_003995882.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905087|gb|ADQ15528.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] Length = 178 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR +R MS + + + T + + E+G+ + L+ I+ LE PI +F Sbjct: 2 LGQRIRNKRKSKSMSLNDVAQKINKTSSYLSQVERGLAEPSITALREIARALEVPIFYFL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + E+ +++F + +L Sbjct: 62 IEEESHNAVVRKEQRRILNFPGSHLTFELL 91 >gi|153955923|ref|YP_001396688.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348781|gb|EDK35317.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 104 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G R+ R + +SQ KL L + + K EKG + L I E +S Sbjct: 2 IDIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITLSE 61 Query: 73 FFDVSPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQ 109 FF+ I + + +N D TP+ L+L FI+ Sbjct: 62 FFNNGNNSEPVILNPQLKELLDNAKDL--TPEQLELLSKFIK 101 >gi|88858937|ref|ZP_01133578.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2] gi|88819163|gb|EAR28977.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2] Length = 170 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +PN +G+R+ R LG++Q L E +G+T Q + E NR + RL I+E Sbjct: 10 NMPN----TIGERVAAERKKLGLTQTALAEKVGVTQQAIGNIEN--NRSDSKRLADIAEA 63 Query: 66 LESPISFF 73 L ++ Sbjct: 64 LGVTYTYL 71 >gi|332980702|ref|YP_004462143.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698380|gb|AEE95321.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 80 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 35/67 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR G++QE+L +G+ + K E G R + + I++ L+ + FF+++ Sbjct: 14 LKERRNAKGLTQEQLAALIGVDRTTITKIENGSARPSVNNAKKIAQALDFDWTIFFNIND 73 Query: 79 TVCSDIS 85 S+ + Sbjct: 74 NQTSETA 80 >gi|291542133|emb|CBL15243.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 108 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 11/113 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ MSQ +L E L + + KYEKG+ + L++++E+ + + +S Sbjct: 6 RLKELRVDNDMSQTELAEKLNLKASAISKYEKGITQPSIDTLKNLAEIFSVTVDYLIGMS 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSS 129 +N + TP+ L +F Q+ + K+R I E ++++ + Sbjct: 66 DI--------KNPYSNSQITPNEADLIEHFRQLTYENKIR--IDERIKTMADA 108 >gi|13476100|ref|NP_107670.1| hypothetical protein mll7326 [Mesorhizobium loti MAFF303099] gi|14026860|dbj|BAB53456.1| mll7326 [Mesorhizobium loti MAFF303099] Length = 192 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 9/95 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R LG++ L I+ + K E G+ + LQ +S L P+ Sbjct: 2 LEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPV 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + FF S + F+ +GL + R Sbjct: 62 TAFFRRFEEERSAV---------FVKAGEGLDVER 87 >gi|332076616|gb|EGI87078.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 288 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L MSQ +L E GI Q Q+ + E G GA L +++ L+ + +FFD Sbjct: 8 RLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSMDYFFDE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + SE + T + +Y ++++VK + Sbjct: 66 QVVEKVEELSEFKKLAQTFITNRNYESLKYIYELENVKAHR 106 >gi|329920508|ref|ZP_08277240.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] gi|328936184|gb|EGG32637.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] Length = 87 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 41/82 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 D + I + +V + Sbjct: 61 LLDKDNAIDLSIIKKPIDVAKY 82 >gi|289449565|ref|YP_003474504.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184112|gb|ADC90537.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 210 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKMIADALGVTVDY 60 Query: 73 FFDVSPTV 80 D + Sbjct: 61 LLDKDNAI 68 >gi|225376377|ref|ZP_03753598.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] gi|225211753|gb|EEG94107.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] Length = 380 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 3/98 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L E LG+T Q + KYE + ++ +SE+ + Sbjct: 54 KIINLRKKNGWSQEELAEKLGVTRQSISKYEGAQSIPDLDKILKLSEIFGVTTDYLIKDE 113 Query: 78 PTVCSDISS---EENNVMDFISTPDGLQLNRYFIQIDD 112 SS E + D +++ ++QI D Sbjct: 114 LEEEEYASSQMQENESESDRSVHKVTMEMANEYLQIID 151 >gi|108803433|ref|YP_643370.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764676|gb|ABG03558.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 134 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 9/131 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R +G SQ +L G+ + E G S ++ +++ L P++ + Sbjct: 2 GPKLRQLRRQMGWSQHELARRSGVDRATISAIESGKRDPSGSTMRKLADALGVPVAELYK 61 Query: 76 VSPTVCSDISSEENNVMDFISTPD-------GLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + I ++ + P+ G L I D + ++E R + Sbjct: 62 EPLEQLTAIYERTDDGWWIVEVPEIPGAVSQGRTLEEARFMIRDAV--RLLLEARRELAE 119 Query: 129 SEKKYRTIEEE 139 E + + E Sbjct: 120 QEHEGHEVIRE 130 >gi|303327942|ref|ZP_07358381.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302861768|gb|EFL84703.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 156 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG I+ RR LG++QE L E +G+ Q + + E+G RL ++ L ++ Sbjct: 48 KLVGTNIQERRKKLGLTQECLAEKIGVGQQSLSRMERGDIAPKLERLPDVAATLRCSVAD 107 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F S ++ + + ++ + L R Sbjct: 108 LFRASGADDHALTRALEDALAGLNIHEKEYLVR 140 >gi|218960438|ref|YP_001740213.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] gi|167729095|emb|CAO80006.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] Length = 356 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG++I+ R L +S ++L + LG+T + YE+G +V L ISE+++ P+ + Sbjct: 1 MNVGEKIKKYRKRLNISGKELAQKLGVTPALISYYEQGKRQVPLKTLMQISEIIKVPLEY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + + T + + F +I D Sbjct: 61 LVTDKEYIAYSAYRGKGRI-----TKEEKEEVALFQEIVDN 96 >gi|325662744|ref|ZP_08151338.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470981|gb|EGC74209.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] Length = 194 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G +Q+ L LG + + +QKYE G V + + +++VL++ ++ Sbjct: 9 IGERIKTLRKKRGYNQKDLATLLGKSLRTIQKYESGEIEVSIAMVNELAKVLDTTSTYL 67 >gi|36958742|gb|AAQ87210.1| Transcriptional regulator [Sinorhizobium fredii NGR234] Length = 181 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R + G++ +++ + ++ + + E+ ++ L+ IS+ L +++ Sbjct: 1 MAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLGVHMNW 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQ 102 FF S P D+ +N F T G++ Sbjct: 61 FFHGSDVPAQEKDVVVRSHNRRKFTFTGLGIE 92 >gi|157158980|ref|YP_001463318.1| transcriptional repressor DicA [Escherichia coli E24377A] gi|157081010|gb|ABV20718.1| putative transcriptional regulator DicA [Escherichia coli E24377A] Length = 131 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 20/126 (15%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ RR LG++Q++L + +G + V K+E G N L ++ L+ ++ Sbjct: 5 RLSQRRKQLGLTQQQLADMVGRSSVSVFKWESGQNEPKGQNLLALANALKCSATWLLFGD 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 E +D +++++EL S+ SEK+ + IE Sbjct: 65 EDQAPTPVDELPTELD--------------------SRQKRLLELFDSLPESEKEKQLIE 104 Query: 138 EECMVE 143 E VE Sbjct: 105 LEDKVE 110 >gi|332653080|ref|ZP_08418825.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518226|gb|EGJ47829.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 208 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+ ++ R G+SQE + L ++ Q + K+E G L+ ++++ E + Sbjct: 16 IDMTLGENLQRLRKEKGLSQEDVARALFVSRQTISKWETDKAEPGVDNLKALADLYEVTL 75 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + T S E D T + L R Sbjct: 76 DQLTGRARTGTDSKESHEQTPSDQYRT---MALIR 107 >gi|300172874|ref|YP_003772039.1| PbsX transcriptional repressor [Leuconostoc gasicomitatum LMG 18811] gi|299887252|emb|CBL91220.1| transcriptional repressor of pbsx genes,putative [Leuconostoc gasicomitatum LMG 18811] Length = 154 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R I G++Q+ L + + + V + E L I+ + PI + Sbjct: 6 QRIKQLRKIYGLTQKDLADKINSSRTNVARIETDKVHPSYPMLSTIANAFDVPIEYL--- 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V +DI + NV+ F + L N F Sbjct: 63 QGIVNADIDNNHENVLYFYDDGEQLDPNMSFYA 95 >gi|293402557|ref|ZP_06646692.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304071|gb|EFE45325.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 173 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L L + Q + K+E G++ + L ISE+ E+P+S Sbjct: 4 ENIKAIRKAKGLSQEELAIKLNVVRQTISKWENGLSVPDSDMLISISEIFETPVSALLGE 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 S I E ++V + + L ++R+KI+ Sbjct: 64 SI-----IEQEADDVKVIAEKLEVINLQLA----KRKEIRRKIL 98 >gi|114766076|ref|ZP_01445085.1| transcriptional regulator, putative [Pelagibaca bermudensis HTCC2601] gi|114541631|gb|EAU44672.1| transcriptional regulator, putative [Roseovarius sp. HTCC2601] Length = 436 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 6/95 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+ILGM Q +L + I+ + E R+G L ++E+L S Sbjct: 4 DTLTGSRIRERRIILGMKQAELARRVDISASYLNLIEHNRRRIGGKLLLDLAEILGVEPS 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPD-GLQLNR 105 + + E + + G +L+R Sbjct: 64 VLTEGAEATLIGALREAA-----LREAEAGAELDR 93 >gi|227819893|ref|YP_002823864.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338892|gb|ACP23111.1| putative transcriptional regulator Xre familiy [Sinorhizobium fredii NGR234] Length = 201 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R + G++ +++ + ++ + + E+ ++ L+ IS+ L +++ Sbjct: 21 MAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLGVHMNW 80 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQ 102 FF S P D+ +N F T G++ Sbjct: 81 FFHGSDVPAQEKDVVVRSHNRRKFTFTGLGIE 112 >gi|317057522|ref|YP_004105989.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449791|gb|ADU23355.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 135 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++ R +G SQE L + L ++ Q V K+E G + A ++ IS F Sbjct: 1 MNIGDKLLFLRNRVGCSQETLADALDVSRQTVSKWELGQSLPDAEKIVAISNYFNVTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFIQID-----DVKVRQKIIELVRSI 126 + V + + + V++F ++ L ++R + I D + R ++ E+V+++ Sbjct: 61 LLRDTSPVKIEKNLD-RIVIEFANSAADLDQISRALVDIARDGIIDEEERLRLFEMVKTV 119 >gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] Length = 183 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +G+ I RR +GM+QE+L +G++ Q V K+E G + RL + +VL++ + Sbjct: 10 IRLGQEILRRRKAMGMTQEELASRMGVSRQSVAKWETGQSSPDIDRLSLLRDVLQTSLD 68 >gi|297203904|ref|ZP_06921301.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297148527|gb|EDY57126.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 234 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 23/116 (19%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R+ G+ L +G++ V + E G ++ S L I+ L + FD Sbjct: 34 GARIRQARLERGLGLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVEALFD 93 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---------QKIIEL 122 T +++ E V+ ++ F D R ++++EL Sbjct: 94 GRETA---VAASEAIVVHALA---------AFAA--DPGRRIGPLVTPGEREVLEL 135 >gi|15892419|ref|NP_360133.1| hypothetical protein RC0496 [Rickettsia conorii str. Malish 7] gi|15619571|gb|AAL03034.1| unknown [Rickettsia conorii str. Malish 7] Length = 161 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 42/161 (26%) Query: 4 NKKIPNPVDINVGKRIRLRRMILG--MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N I +P D +R++ RR+ +G + I+ QV+KYE+G++ + SRL Sbjct: 2 NYSIKHP-DKLASERLKERRLAVGRYYPKRIRASFFDISALQVKKYEEGLSNIPISRLYV 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE--------------ENNVMDFISTPDG------- 100 ++VL +P+ +FF+ S +E E++ ++ I+ +G Sbjct: 61 FAKVLNTPLKYFFNSSEEEKLKADNENTPNNKIEYLFKEIESDFLNNIAEAEGQYEHEVS 120 Query: 101 --------------LQLNRYFIQIDDVKVRQKIIELVRSIV 127 L L R F +R+ IIE VRS+ Sbjct: 121 FDYKELSRTMERALLSLTRAFTT----NIRKIIIEHVRSVS 157 >gi|325679534|ref|ZP_08159114.1| peptidase S24-like protein [Ruminococcus albus 8] gi|324108821|gb|EGC03057.1| peptidase S24-like protein [Ruminococcus albus 8] Length = 228 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPI 70 ++ +GKRI+ RR LGM+QE LG LG +Q+YE G ++ ++ +++ L Sbjct: 4 NVEIGKRIKKRREELGMTQEALGSPLGFNKSTIQRYEAGKVAKIKLPIIEAMAQRLNVSP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + S + + ++ + +S+ L Sbjct: 64 EWLALKSDDMGEYHGAPDSLLESKVSSNVAAVL 96 >gi|260663676|ref|ZP_05864565.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260551902|gb|EEX25017.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 78 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES---PISFFF 74 R+R R+ GM+QE++ E LGI+ K E G+ +GA+ L ISEVL IS FF Sbjct: 7 RLRAERIAKGMTQEEMAERLGISRAAYAKREAGIVDIGANELAAISEVLGIDRDHISIFF 66 Query: 75 DVSPTVCSD 83 DVS + +D Sbjct: 67 DVSSPIGND 75 >gi|227432755|ref|ZP_03914721.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351491|gb|EEJ41751.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 256 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G++Q++ E L I+FQ V +E+ + I E + P+ Sbjct: 17 MEIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKGYPTTEMMLLIIEKFDLPLD- 75 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 FF + PT + + EE ++ F++ Sbjct: 76 FFIIPPTNSCEDNDEELILLSFLAN 100 >gi|257451797|ref|ZP_05617096.1| SOS-response transcriptional repressors [Fusobacterium sp. 3_1_5R] gi|317058353|ref|ZP_07922838.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] gi|313684029|gb|EFS20864.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] Length = 208 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R ++QE+ + G+T + KYE G + L +I+ + PIS+F Sbjct: 10 IGDKILKLRKETALTQEQFSKIAGVTPLSILKYESGERLISIETLLNIANYFKIPISYF 68 >gi|119387120|ref|YP_918175.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377715|gb|ABL72479.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 213 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 34/85 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +VG R++ R MSQ +L E G+ QV E G + + L+ I L +S Sbjct: 24 DFDVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGVTMS 83 Query: 72 FFFDVSPTVCSDISSEENNVMDFIS 96 FF+ + D S Sbjct: 84 EFFEPDLPQSPQPFFTPAELRDLTS 108 >gi|227534216|ref|ZP_03964265.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188150|gb|EEI68217.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 344 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 38/59 (64%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ + IR RR+ LG++QE+L + +G++ V K+EK V+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELADKIGVSAPAVSKWEKRVSYPDITLLPALARILGTDVN 59 >gi|269955724|ref|YP_003325513.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304405|gb|ACZ29955.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 505 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 3/112 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R GM+ + L +G QV E G +RLQ ++ L + + Sbjct: 27 LTIGRRIRHLRTERGMTLDDLAAAIGKAPSQVSLLENGKREPTIARLQAVARALGAGVED 86 Query: 73 FFDVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D P D E + G++ R + + + I+ L Sbjct: 87 LLDPRPPSRRDALELELERTQRGPLFDALGIRPVRVGRSLPTDAL-EAILAL 137 >gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] Length = 126 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G IR R G++Q+KLGE GI ++KYE G LQ I++ L+ P++ Sbjct: 4 YTGDMIRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVN 61 >gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica ATCC 39073] Length = 178 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IR R GMS + + E G+T + + E+ + + L+ I+E L+ PI +F Sbjct: 2 LGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYFL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR---SIVSSEK 131 + ++ V+ F + +L + R + + R S ++ Sbjct: 62 LNPEDHSPVVRKDQRKVLRFPQSHLTYEL------LSPDLNRNMEVMMARLEPGAASCDE 115 Query: 132 KYRTIEEECMV 142 EEC+V Sbjct: 116 PLAHPGEECIV 126 >gi|47093927|ref|ZP_00231665.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47017687|gb|EAL08482.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] Length = 194 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+ +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 12 DIDMEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGST 71 Query: 70 ISFFFDVSPTVCSDISSE 87 FFD I E Sbjct: 72 PKDFFDEEEHNQKVIYGE 89 >gi|291548981|emb|CBL25243.1| Predicted transcriptional regulator [Ruminococcus torques L2-14] gi|295110023|emb|CBL23976.1| Predicted transcriptional regulator [Ruminococcus obeum A2-162] Length = 211 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E V F+ + L Sbjct: 68 -ELLSGEWKYVNQAEKEVCQFLRIEERL 94 >gi|257869747|ref|ZP_05649400.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803911|gb|EEV32733.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 211 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E V F+ + L Sbjct: 68 -ELLSGEWKYVNQAEKEVCQFLRIEERL 94 >gi|209546022|ref|YP_002277912.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538879|gb|ACI58812.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF + + F+ G++L R Sbjct: 94 PMTAFFRRFEEPRNAV---------FVKAGQGIELER 121 >gi|200389135|ref|ZP_03215747.1| I C protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199606233|gb|EDZ04778.1| I C protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 107 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 5/78 (6%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISE 64 + DI +R++ R+ G+SQ++LG G + ++ +YEKGV+ G +Q ++E Sbjct: 6 HYNDIF-CRRLKQARLASGLSQKRLGIAAGIDEFVASTRINRYEKGVHEPGTEIVQKLAE 64 Query: 65 VLESPISFFFDVSPTVCS 82 VL P+++F+ + Sbjct: 65 VLRVPLAYFYAEDDDLAE 82 >gi|91211688|ref|YP_541674.1| repressor protein [Escherichia coli UTI89] gi|117624572|ref|YP_853485.1| putative phage repressor protein [Escherichia coli APEC O1] gi|218559304|ref|YP_002392217.1| Repressor protein CII [Escherichia coli S88] gi|218695990|ref|YP_002403657.1| Repressor protein CII [Escherichia coli 55989] gi|91073262|gb|ABE08143.1| repressor protein [Escherichia coli UTI89] gi|115513696|gb|ABJ01771.1| putative phage repressor protein [Escherichia coli APEC O1] gi|148566149|gb|ABQ88424.1| prophage repressor [Enterobacteria phage CUS-3] gi|218352722|emb|CAU98505.1| Repressor protein CII [Escherichia coli 55989] gi|218366073|emb|CAR03818.1| Repressor protein CII [Escherichia coli S88] gi|294490247|gb|ADE89003.1| repressor protein C2 [Escherichia coli IHE3034] gi|307626074|gb|ADN70378.1| Repressor protein CII [Escherichia coli UM146] gi|312945519|gb|ADR26346.1| Repressor protein CII [Escherichia coli O83:H1 str. NRG 857C] gi|323948802|gb|EGB44701.1| peptidase S24 [Escherichia coli H252] gi|324117735|gb|EGC11634.1| peptidase S24 [Escherichia coli E1167] Length = 216 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L ++ L+ + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDYLMK 66 Query: 76 VSPTVCSDISSEENNV 91 ++ + ++ Sbjct: 67 GEESLSNIAYHSRHDP 82 >gi|325123768|gb|ADY83291.1| hypothetical protein BDGL_002705 [Acinetobacter calcoaceticus PHEA-2] Length = 209 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 N V +VG IRL R +SQ+ L + G++ + + E G + ++L I+ V Sbjct: 28 SQSNTVLQHVGTNIRLLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAV 87 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFIS 96 L T+ S +E+ V++ ++ Sbjct: 88 LGVD-------FKTIVSAPEHKEHAVVNALA 111 >gi|266623939|ref|ZP_06116874.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288864240|gb|EFC96538.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 147 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 5/106 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +N+G+RIR R M+Q +L E +G T Q V KYE G V + +L +++ L + S Sbjct: 1 MNIGERIRGLREKQEMTQTELAEKIGSTKQTVYKYENGVVTNIPYDKLILLAKALGTTPS 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDDVKV 115 + +EE +D ++ L +LN Y I + D +V Sbjct: 61 SLMGWDK--IEEAINEEFTRLDNLTKQYILLFELNGYKIDVGDEQV 104 >gi|259503754|ref|ZP_05746656.1| DNA-binding protein [Lactobacillus antri DSM 16041] gi|259168270|gb|EEW52765.1| DNA-binding protein [Lactobacillus antri DSM 16041] Length = 112 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R +Q+ L E L ++ Q + K+E G RL IS + + + Sbjct: 1 MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60 Query: 73 FFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQID 111 ++ I + + NV +F+ + + + I Sbjct: 61 LIKGDDSLKKSIVITKNAKAQTNVWEFMRSTGWMMVIAIIYLIT 104 >gi|116255759|ref|YP_771592.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260407|emb|CAK03511.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 243 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 50 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 109 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF + + F+ G++L R Sbjct: 110 PLTAFFRRFEEPRNAV---------FVKAGQGIELER 137 >gi|319650690|ref|ZP_08004829.1| hypothetical protein HMPREF1013_01434 [Bacillus sp. 2_A_57_CT2] gi|317397547|gb|EFV78246.1| hypothetical protein HMPREF1013_01434 [Bacillus sp. 2_A_57_CT2] Length = 297 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R I ++Q++L E + T Q+ K E G AS L IS+ L +++FF Sbjct: 6 IGDKIKELRRIQRITQKELAEDI-CTQAQISKLENGEVIPCASTLFLISQKLGIDVNYFF 64 Query: 75 DVSPTVCSDISSE 87 ++ T D E Sbjct: 65 NIGLTPRLDYVEE 77 >gi|313899162|ref|ZP_07832684.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956040|gb|EFR37686.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 5 FLGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPN-- 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ I+ E V F+ + L Sbjct: 63 -ELLSGEWKYINQAEKEVCQFLRAEERL 89 >gi|307707493|ref|ZP_07643975.1| transcriptional activator [Streptococcus mitis NCTC 12261] gi|307616445|gb|EFN95636.1| transcriptional activator [Streptococcus mitis NCTC 12261] Length = 287 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ R++R LG+SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRVKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|241666493|ref|YP_002984577.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861950|gb|ACS59615.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF + + F+ G++L R Sbjct: 94 PLTAFFRRFEEPRNAV---------FVKAGQGIELER 121 >gi|146296435|ref|YP_001180206.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410011|gb|ABP67015.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 103 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 16/119 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK+I+ R SQEKL GI+ + E+G+ + L +I L + Sbjct: 1 MEVGKKIKELRKQKKWSQEKLAAEAGISQSALSAIERGIKQPTVETLNNICNALNITLVD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF T +P L+L ++ + K+ + I + +R + ++ Sbjct: 61 FFSEEKTEL---------------SPALLELINVASKMPENKL-KLISDFIRGLSENDD 103 >gi|227873925|ref|ZP_03992145.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840231|gb|EEJ50641.1| transcriptional regulator [Oribacterium sinus F0268] Length = 213 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ RM +QE++ E LG++ Q + +E G + + +SE + + Sbjct: 5 IGSKIKAARMEKKFTQEQVAEVLGVSRQTISNWENGKSYPDIISVIKMSECYGVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQI 110 + D E NV+ + + + ++ I Sbjct: 65 KGEEKMSGYYDFLEESTNVVKSTGNRNKIIIILSYMLI 102 >gi|15900927|ref|NP_345531.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|237650284|ref|ZP_04524536.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CCRI 1974] gi|237822126|ref|ZP_04597971.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CCRI 1974M2] gi|14972531|gb|AAK75171.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] Length = 288 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L MSQ +L E GI Q Q+ + E G GA L +++ L+ + +FFD Sbjct: 8 RLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSMDYFFDE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + SE + T + +Y ++++VK + Sbjct: 66 QVVEEVNELSEFKKLAQTFITNRNYESLKYIYELENVKAHR 106 >gi|325840878|ref|ZP_08167213.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490135|gb|EGC92473.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 330 Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R GMSQE+L LG+T Q + +E+G+ + L ++ + E+ + Sbjct: 5 QLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDL--- 61 Query: 74 FDVSPTVCSDISSEENNV 91 D + SDI E + Sbjct: 62 -DGLMGIKSDIKEEPVEL 78 >gi|126649830|ref|ZP_01722066.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] gi|126593549|gb|EAZ87494.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] Length = 180 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L I EVL S Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 73 FFDVSPTVCSDISSEEN 89 FFD + +EE+ Sbjct: 61 FFDDGTPEQKVVYTEED 77 >gi|116669644|ref|YP_830577.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609753|gb|ABK02477.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 199 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG ++R R GM+ +L + G++ V + E+G+ + L ++ L+ P+ FF Sbjct: 18 VGNKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLANPSFTTLAQLAHGLDVPVGRFF 77 Query: 75 DVSPTVCSDISSEEN 89 S + + + Sbjct: 78 IGQDESKSPVVRKSD 92 >gi|319939951|ref|ZP_08014306.1| serine hydroxymethyltransferase [Streptococcus anginosus 1_2_62CV] gi|319810962|gb|EFW07281.1| serine hydroxymethyltransferase [Streptococcus anginosus 1_2_62CV] Length = 290 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ +R+ LG+SQ++L E G+ Q Q+ + EKG G+ L +S+ + P+++FFD Sbjct: 8 RLKSKRLELGVSQKELAE--GVCEQGQISRMEKGKYMPGSDLLYSLSKKMNVPMNYFFDD 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVR 116 S + + +++ +Y ++ D + R Sbjct: 66 SVLGETSKLVQFKELVESFLVKREYDSLKYLYSLEIDKQHR 106 >gi|9630190|ref|NP_046617.1| putative SPbeta phage repressor [Bacillus phage SPBc2] gi|16079161|ref|NP_389985.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221310009|ref|ZP_03591856.1| hypothetical protein Bsubs1_11581 [Bacillus subtilis subsp. subtilis str. 168] gi|221314331|ref|ZP_03596136.1| hypothetical protein BsubsN3_11502 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319253|ref|ZP_03600547.1| hypothetical protein BsubsJ_11428 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323529|ref|ZP_03604823.1| hypothetical protein BsubsS_11557 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342058|sp|O31943|YONR_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized HTH-type transcriptional regulator yonR gi|2634522|emb|CAB14020.1| putative transcriptional regulator (Xre family); phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|3025543|gb|AAC13038.1| putative SPbeta phage repressor [Bacillus phage SPbeta] Length = 108 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 11/110 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R G SQ+++ + LGIT Q KYE G L +S +L F Sbjct: 3 GERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFLLK 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVR 124 + + ++ + ++ P+ L + I + + ++ + L++ Sbjct: 63 G--------THAQFDLDEILNDPET--LIAGYNGMISEEQAKELLYYLLK 102 >gi|313116082|ref|ZP_07801505.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621588|gb|EFQ05120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 120 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 16/123 (13%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +G+++R R + G++QE+L E ++ + + EKG L I+ VL Sbjct: 3 MPNSDLKVLGEKVRTERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARVL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S D T D + E + NR ++ + VR+ +++ R++ Sbjct: 63 --PVS--LDALITPGMDKTEIELK-----------EFNRIYLSCPEA-VRETLMDSTRTL 106 Query: 127 VSS 129 Sbjct: 107 AKH 109 >gi|242240629|ref|YP_002988810.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242132686|gb|ACS86988.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 93 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ ++QE+LG GI + ++ +YE G + + + L P S+ Sbjct: 4 ERLKNARLRANLTQEQLGVLAGIGEETAYSRLSQYESGTHTPSFKTVCAFAHALNVPESY 63 Query: 73 FFDVSPTVCSDISS-EENNVMDFISTPDG 100 F+ V + I + + + TP+G Sbjct: 64 FYTVDDSFAEAILTLYAGETVRWQRTPEG 92 >gi|226948120|ref|YP_002803211.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] gi|226840862|gb|ACO83528.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] Length = 384 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N D+N+GK I +R G++QE+L +G++ V K+E G + L ++ Sbjct: 1 MINLRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYF 60 Query: 67 ESPISFFFDVSPTVCSD 83 + SP + + Sbjct: 61 NISVDELLGYSPQLTKE 77 >gi|289578606|ref|YP_003477233.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528319|gb|ADD02671.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 129 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 55/128 (42%), Gaps = 8/128 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N KR+ R G++Q++L + LG++ + YE G LQ +S++ + + Sbjct: 1 MNFAKRLATLRKEAGLTQKELADKLGVSRGTIGMYEIGQRDPDTETLQKLSDIFGVSVDY 60 Query: 73 FFD-----VSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ ++ +++F + + L+L + K +++I +++ Sbjct: 61 LLGKTDIRNPSDEITEAVEDDPELLEFWNELKQREDLKLLFKQTRKLSPKDIKQVIRIIK 120 Query: 125 SIVSSEKK 132 +I E Sbjct: 121 AIEEEESN 128 >gi|197105901|ref|YP_002131278.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479321|gb|ACG78849.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 206 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G +R+RR LG++ ++L E G++ + + E+G L IS+ L ++ Sbjct: 22 INIGPAVRVRRKELGLTLKELAERSGLSVAFISQIERGKTAPSIISLLQISDALGVGVNH 81 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 F + + + +D S ++L+ F Sbjct: 82 FVEATQEEKLIRRGRDPEFIDVDSPTTYIRLSNSFP 117 >gi|306830136|ref|ZP_07463320.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304427662|gb|EFM30758.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 228 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 26/120 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSQEKVAQLENILKVAKGYFTQ- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + + + K++ R++ E+ + + Sbjct: 64 ------------------------IEIVRLYNSL-SKQGKDKVVLYARNLAKEEQTQKVM 98 >gi|222081886|ref|YP_002541251.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726565|gb|ACM29654.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAASTGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P++ FF + + F+ G++L R Sbjct: 94 PLTAFFRRYEEPRNAV---------FVKAGQGIELER 121 >gi|332983435|ref|YP_004464876.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332701113|gb|AEE98054.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 127 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 14/120 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R +SQ +L LG+T Q + YE G+ + I+ I + Sbjct: 2 NRIKELREEAKISQAELASILGVTQQALSNYENGLREPDLDTINKIANYFGVSIDYLLCR 61 Query: 77 SPTVCSDISSEE-------NNVMDFISTPDGLQLNRYFIQIDDVK---VRQ--KIIELVR 124 + SD+ E + + ++ + ++L F +I D+K V++ KIIE+V Sbjct: 62 TNVRNSDVIEEAIKDDPELERIWNMLNNREEVRLM--FKKIADLKPADVKRILKIIEIVE 119 >gi|126173068|ref|YP_001049217.1| helix-turn-helix domain-containing protein [Shewanella baltica OS155] gi|125996273|gb|ABN60348.1| helix-turn-helix domain protein [Shewanella baltica OS155] Length = 367 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+ R G+S L +G++ ++KYE G +S L +++ L+ +FF Sbjct: 4 ERLERARKAAGLSMNALANEVGLSANAIKKYEHGTAMPSSSNLLKLAKALDVRTEYFF 61 >gi|327441218|dbj|BAK17583.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 180 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 40/77 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L ++ EVL Sbjct: 1 MQIGSKIKALRIKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFNLLEVLGCTPRD 60 Query: 73 FFDVSPTVCSDISSEEN 89 FFD + + ++++ Sbjct: 61 FFDDTQENEKIVFTKDD 77 >gi|163731540|ref|ZP_02138987.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161394994|gb|EDQ19316.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 429 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR + G+ Q L LGI+ + E R+G L I+ VL S Sbjct: 7 IGSRIRERRSVAGLKQADLARSLGISPSYLNLIEHNRRRIGGKLLLDIARVLSVEPSLLT 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + + E + +S+ + Sbjct: 67 EGAEAALIATLREAAKSAN-LSSAE 90 >gi|266622984|ref|ZP_06115919.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288865257|gb|EFC97555.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 365 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 11/96 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+RI R M+Q +L E LGI+ Q V K+E G++ L +S+VL Sbjct: 33 GERITYLRKRKKMTQAQLAEQLGISAQAVSKWESGLSCPDIMTLVPLSQVLGVSTDELLG 92 Query: 74 ---------FDVSPTVCSDISSEENNVMDFISTPDG 100 F+ S T+ + +E N S + Sbjct: 93 VQGGMGAGGFEASGTMEAGEHAESNTEPITESNAEA 128 >gi|239626413|ref|ZP_04669444.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516559|gb|EEQ56425.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 232 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK IR R MSQE+L L +T Q V +E G + L+ I+ ++ I Sbjct: 4 IGKNIRNLRKQKKMSQEQLAGLLHVTRQAVSNWETGRTQPDIETLEAIAGAFDTDI 59 >gi|219848414|ref|YP_002462847.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542673|gb|ACL24411.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 211 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGKR+R R MS L E G+ + E G S LQ ++ L+ PIS Sbjct: 20 VDVGKRLRTLRERQRMSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPISA 79 Query: 73 FF 74 FF Sbjct: 80 FF 81 >gi|114563122|ref|YP_750635.1| helix-turn-helix domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334415|gb|ABI71797.1| helix-turn-helix domain protein [Shewanella frigidimarina NCIMB 400] Length = 367 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+ R G+S L +G++ ++KYE G +S L +++ L+ +FF Sbjct: 4 ERLERARKAAGLSMNALASEVGLSANAIKKYEHGTTMPSSSNLLKLAKALDVRSEYFF 61 >gi|227821998|ref|YP_002825969.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227340998|gb|ACP25216.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 244 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G +R R LG++ + I+ + K E G + LQ ++ L PI Sbjct: 53 LEVAIGHEVRAFRKKLGITVSDVAAATDISVGMLSKIENGNTSPSLTTLQTLARALGVPI 112 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + FF S + + +D Sbjct: 113 TSFFRGFEEEHSAVFVKAGEGVD 135 >gi|255505928|ref|ZP_05348929.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265073|gb|EET58278.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +G RI+ R +QE++ + +G++ Q+ + E G N + L I+EVL+ + Sbjct: 7 LGGRIKALRNAKNFTQEQIADRIGVSRQKYARIENGANSITLDILSAIAEVLDVTVGDIT 66 Query: 74 --FDVSPTV---CSDISSEENNVMDFI 95 D P V + S + D + Sbjct: 67 KVLDEKPAVAYRAGEGGSSSAKIFDML 93 >gi|291526890|emb|CBK92476.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 97 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R+ ++QE++ + +G++ Q+ + E G N + L ++E+L+ + Sbjct: 5 LGSRIKALRIAKNLTQEQVADQIGVSRQKYARVESGTNSITLDILSKVAEILDVTVG 61 >gi|110677426|ref|YP_680433.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453542|gb|ABG29747.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 215 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 9/99 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R GM+ +L ++ + K E G + LQ ++ L P+ Sbjct: 27 LEVAIGREVRAYRKQKGMTVAELSRLTDLSIGMLSKIENGNTSPSLTTLQALANALSVPL 86 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + FF + ++ +GL++ R + Sbjct: 87 TAFFKGFEEHREAVHTKAG---------EGLEIERAGTR 116 >gi|56965322|ref|YP_177054.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911566|dbj|BAD66093.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 303 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G IR RM LGMSQE + + ++ + K E G L+ I+ L P+ Sbjct: 1 MDNRIGMEIRNLRMKLGMSQENISSSV-VSQSAISKIENGKYIPNIIVLEAIASKLGVPV 59 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL-QLNR 105 F +S + + +++ +S + +LNR Sbjct: 60 DHFLTLSTSYNGEYIETTYEMIEQLSLHEEYEELNR 95 >gi|303242127|ref|ZP_07328617.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590314|gb|EFL60072.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 196 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 18/129 (13%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R ++Q +L E LG+ Q + YE G L +++ F Sbjct: 13 QRIKQLREENKINQHQLAEILGVKNQTISNYEAGEREPSYGVLLKLADYFNVSTDFLLGR 72 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + SD+ + +++ + D LQ N Y+ K I+LV +K+Y Sbjct: 73 TNISHSDLGQKTEYLLEHDAYSDTLQEIFNEYY----------KFIDLV------DKEYE 116 Query: 135 TIEEECMVE 143 +E C+ + Sbjct: 117 KTQENCLEQ 125 >gi|160939733|ref|ZP_02087080.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC BAA-613] gi|158437167|gb|EDP14932.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC BAA-613] Length = 185 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 40/78 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R G SQE+L + L ++ Q + K+E G + + +S++ I F Sbjct: 1 MTFGEKLKFLRKQKGFSQERLSQQLTVSRQAISKWELGESLPDTENVIQLSKLFSVSIDF 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + +DI + ++N Sbjct: 61 LLNDNICSEADIPAVQHN 78 >gi|94495587|ref|ZP_01302167.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58] gi|94424975|gb|EAT09996.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58] Length = 470 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 10/130 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R+ R LG+SQ ++ E LG++ + E+ + A + ++ + I Sbjct: 9 LYLGPKLRVLRRELGLSQTQMAEELGVSPSYLNHLERNQRPLTAQMMLRLANTYDIDIRD 68 Query: 73 FF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVR-- 124 F D P +I S+ IS + L++ + + + R + + +L R Sbjct: 69 FAAPSTDGGPRELGEILSDALVRDIGISRDEVLEVAENYPGVTEAVARFYRALTDLRRVP 128 Query: 125 --SIVSSEKK 132 ++ ++ Sbjct: 129 GEALAGGAER 138 >gi|331092227|ref|ZP_08341055.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401659|gb|EGG81238.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] Length = 154 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 27/122 (22%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I L+R M+QE+L E LG++ + + K+E G S ++++ + LE ++ F Sbjct: 6 IGKYISLKRKQKNMTQEQLAEKLGVSNKTISKWETGKCMPDYSIIKNLCDELEITVAELF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D + S E++ R + + ++ + L+R I EK+ Sbjct: 66 DG------ETSGEKS--------------VRVYDK-------EQFLNLLRRIQELEKQKN 98 Query: 135 TI 136 T+ Sbjct: 99 TL 100 >gi|329666628|gb|AEB92576.1| putative transcriptional regulator, Xre family [Lactobacillus johnsonii DPC 6026] Length = 288 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ +SE+ + Sbjct: 1 MRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSELFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI--DDVKVRQKIIELV 123 +++ + PD +L + ++ K+R I L Sbjct: 61 LLKSGAPSFEIKTADIPAEDKLLILPD--ELVQKYLSTAKKSSKLRALSIALA 111 >gi|291530756|emb|CBK96341.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 302 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++++ R G++QE+L + LG+T Q V K+E G L I+++ + I + Sbjct: 7 KQLQMLRKQSGITQEQLADKLGVTAQAVSKWENGS-YPDGDLLPKIADIFDVSIDNLYGR 65 Query: 77 SPTVCS 82 CS Sbjct: 66 GEERCS 71 >gi|255531981|ref|YP_003092353.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344965|gb|ACU04291.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 327 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R + +SQ +L + L I+ Q V K+E+G + +SE+L +++F Sbjct: 7 IGNKITEARKKINISQVQLAQRLFISPQAVGKWERGESMPDIITFNRLSEILGVDLNYF 65 >gi|255100973|ref|ZP_05329950.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GKRI++ R+ ++QE + + +G+T Q V E G + V + L I+ +L + Sbjct: 8 IGKRIKIARIRTNLTQETVADKIGVTPQHVSNIETGNSSVSLTTLVAIANLLNVSVD 64 >gi|332638098|ref|ZP_08416961.1| hypothetical protein WcibK1_05343 [Weissella cibaria KACC 11862] Length = 112 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 5/90 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R +Q+ L E L ++ Q + K+E G RL IS + + Sbjct: 1 MILGQRIKEEREKRQWTQDYLAETLNVSRQTISKWEVGSTYPDIDRLVQISNLFGITLDS 60 Query: 73 FFDVSPTVCSDI-----SSEENNVMDFIST 97 ++ I + + NV +F+ + Sbjct: 61 LIKGDDSLKKSIVITKNAKAQTNVWEFMRS 90 >gi|282874480|ref|ZP_06283366.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|281296736|gb|EFA89244.1| DNA-binding protein [Staphylococcus epidermidis SK135] Length = 104 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R +L M+QE L + L T Q V K+EK + + L +S++ ++ Sbjct: 1 MVLGEQIKKHRKLLNMTQEDLCQKLNTTRQTVSKWEKNMIEPDINTLLKLSDIFGISLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 ++ S+E NV +F+S Sbjct: 61 LITGEKEFINN--SKEMNVWEFLSEK 84 >gi|217974624|ref|YP_002359375.1| helix-turn-helix domain-containing protein [Shewanella baltica OS223] gi|217499759|gb|ACK47952.1| helix-turn-helix domain protein [Shewanella baltica OS223] gi|319428169|gb|ADV56243.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 367 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+ R G+S L +G++ ++KYE G +S L +++ L+ +FF Sbjct: 4 ERLERARKAAGLSMNALANEVGLSANAIKKYEHGTAMPSSSNLLKLAKALDVRTEYFF 61 >gi|315274405|ref|ZP_07869367.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] gi|313615952|gb|EFR89134.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] Length = 111 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF P V + + ++ D ++ + + Y Sbjct: 63 DDFFPERSLPPVDERLVTIAAHIDDDVTDEEMRDILAY 100 >gi|32266247|ref|NP_860279.1| hypothetical protein HH0748 [Helicobacter hepaticus ATCC 51449] gi|32262297|gb|AAP77345.1| hypothetical protein HH_0748 [Helicobacter hepaticus ATCC 51449] Length = 228 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R M+Q+ E GI++ +Q YE G L +S++ P+ FF Sbjct: 2 IGSKLVALRNEHQMTQKDFAERTGISYGTLQAYEYGTQSPRYDYLTKVSDIFNVPMIFFL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D ++ + ++ + V D + L Sbjct: 62 DDDTSLGNSYTNPKGFVSDSLDVRKSDSLV 91 >gi|291521205|emb|CBK79498.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 111 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K N + +GKRI+ RR+ LGM Q +L E + I+ + E+G+ R G I +V Sbjct: 2 KNENERFVEMGKRIKARRVSLGMKQMELAERIDISNNHISSIERGIERPGLESFIRICDV 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 L+ + + +DI + + + + Sbjct: 62 LDVTPDYLL-LGSMKANDIPKNITDNLKLCTDEE 94 >gi|28210633|ref|NP_781577.1| putative transcriptional regulator [Clostridium tetani E88] gi|28203071|gb|AAO35514.1| putative transcriptional regulator [Clostridium tetani E88] Length = 126 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ R + SQE+L + LG++ Q + K+E G + S + +S + + Sbjct: 1 MEISERLQQLRKLANYSQEQLADMLGVSRQAISKWESGQSNPDISNVIKLSGIYNVSTDY 60 >gi|304392640|ref|ZP_07374580.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303295270|gb|EFL89630.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 197 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 40/89 (44%), Gaps = 1/89 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R ++ +L +G + + + E+G++ L+ ++ + PIS+ Sbjct: 17 MALGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLSSPSIDDLRALAAAFDVPISW 76 Query: 73 FFDVSPTVCSDISS-EENNVMDFISTPDG 100 FF P ++ + + + + +G Sbjct: 77 FFATEPLNEAERGTVMRADYRRQLGSREG 105 >gi|225575526|ref|ZP_03784136.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] gi|225037276|gb|EEG47522.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] Length = 124 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G+R++ R+ G+SQ +LGE +G IT Q + +YEK N ++ I++ L+ P Sbjct: 1 MTFGERVKELRLKKGLSQRELGERMGGITQQTIAQYEKSENYPKLETIRRIAKALDVP 58 >gi|238755351|ref|ZP_04616693.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473] gi|238706386|gb|EEP98761.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473] Length = 123 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPI 70 V KR++ R G+SQEKL E +GI ++ YE G N + I++ L+ P Sbjct: 2 VPKRLKAAREAAGLSQEKLAELVGIEGVSLNSRLSNYEVGRNTPSFDFIVRIAKALDYPE 61 Query: 71 SFFFDVSPTVCSDI 84 S+F+ + V I Sbjct: 62 SYFYTIDDDVAEAI 75 >gi|308071595|ref|YP_003873200.1| transcriptional regulator yazB [Paenibacillus polymyxa E681] gi|305860874|gb|ADM72662.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus polymyxa E681] Length = 114 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G +QE+L E G+ + + E+G + L+ I L P F Sbjct: 7 VGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALNVPAFELF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D N +M I++ + +L Sbjct: 67 QFDENT--DRKQIINELMLLINSRETTEL 93 >gi|326386490|ref|ZP_08208113.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209151|gb|EGD59945.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 204 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R G++ L E G++ V + E+G++ L ++ L + +FF Sbjct: 24 LGQQIRALRRDRGLTLAHLAETTGLSLGLVSQIERGLSEPSVKALHLLASALGVTVGWFF 83 Query: 75 DVSPTVCSDISSEE 88 + + Sbjct: 84 RDDGEREDTLPESD 97 >gi|89899047|ref|YP_521518.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343784|gb|ABD67987.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 197 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R RR I G++ +L + G++ + + E+G++ + I L P+S+ F Sbjct: 16 LGMQVRQRRRIKGLTLTELSQQSGLSVGLLSQIERGLSSPSLKSMTQICTALGVPLSWLF 75 Query: 75 DVSP 78 D P Sbjct: 76 DNGP 79 >gi|323156532|gb|EFZ42685.1| repressor protein C2 [Escherichia coli EPECa14] Length = 211 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +++ L+ + Sbjct: 2 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 61 Query: 76 VSPTVCSDISSEENNV 91 ++ + ++ Sbjct: 62 GEDSLSNIAYHSRHDP 77 >gi|313635253|gb|EFS01552.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL N1-067] gi|313639938|gb|EFS04624.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL S4-171] Length = 111 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 2/98 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF P + ++ D ++ + + Y Sbjct: 63 DDFFPERNLPPADERGMTIAAHIDDDVTDEELRDILAY 100 >gi|309701005|emb|CBJ00303.1| putative prophage repressor [Escherichia coli ETEC H10407] Length = 211 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +++ L+ + Sbjct: 2 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 61 Query: 76 VSPTVCSDISSEENNV 91 ++ + ++ Sbjct: 62 GEDSLSNIAYHSRHDP 77 >gi|331657741|ref|ZP_08358703.1| repressor protein C2 [Escherichia coli TA206] gi|315299798|gb|EFU59038.1| peptidase S24-like domain protein [Escherichia coli MS 16-3] gi|331055989|gb|EGI27998.1| repressor protein C2 [Escherichia coli TA206] Length = 216 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +++ L+ + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 66 Query: 76 VSPTVCSDISSEENNV 91 ++ + ++ Sbjct: 67 GEDSLSNIAYHSRHDP 82 >gi|260585081|ref|ZP_05852823.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] gi|260157277|gb|EEW92351.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] Length = 180 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++ R+ G++QE+L E ++ + + E ++ I EVL Sbjct: 1 MEIGSHLKALRVQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCAPKD 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF+ P + E+ + Sbjct: 61 FFEDGPEEALTVYGPEDMTV 80 >gi|157159743|ref|YP_001457061.1| P22 repressor protein c2 [Escherichia coli HS] gi|253774261|ref|YP_003037092.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260856262|ref|YP_003230153.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291283947|ref|YP_003500765.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|157065423|gb|ABV04678.1| P22 repressor protein c2 [Escherichia coli HS] gi|194021560|gb|ACF32369.1| repressor protein C2 [Enterobacteria phage DE3] gi|253325305|gb|ACT29907.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976933|gb|ACT42603.1| Repressor protein C2 [Escherichia coli BL21(DE3)] gi|257754911|dbj|BAI26413.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|290763820|gb|ADD57781.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|313848585|emb|CBY77813.1| P22 repressor protein c2 [Escherichia coli BL21(DE3)] gi|324114861|gb|EGC08828.1| peptidase S24 [Escherichia fergusonii B253] Length = 216 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +++ L+ + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 66 Query: 76 VSPTVCSDISSEENNV 91 ++ + ++ Sbjct: 67 GEDSLSNIAYHSRHDP 82 >gi|313114612|ref|ZP_07800120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623076|gb|EFQ06523.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 210 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+SQ +L LG+T Q V K+E G + S + I+E+L + + + Sbjct: 7 LKQCRKKQGISQAELASKLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADYLLGLYR 66 Query: 79 TVCSDISSEENNVMDFISTPDGL 101 V + + EE F S + L Sbjct: 67 PVSNVSAPEERF---FGSYSESL 86 >gi|308068399|ref|YP_003870004.1| transcriptional regulator y4dJ [Paenibacillus polymyxa E681] gi|305857678|gb|ADM69466.1| Putative HTH-type transcriptional regulator y4dJ [Paenibacillus polymyxa E681] Length = 112 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIR R G+SQE LGE G F + + E+G V + I+ L+ + Sbjct: 8 KLVGARIRALRKEKGLSQESLGEKGGFHFSYIGQIERGEKNVSLINIAKIANALDVNLIQ 67 Query: 73 FFDVSPTVCSDISSEE--NNVMDFI--STPDGLQLNRY 106 F EE +++ + S+P+ ++L R Sbjct: 68 LFAYVNEDIKVTKHEEGIQEIVNILQKSSPEKVRLARN 105 >gi|295101168|emb|CBK98713.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 210 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 37/76 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+SQ +L LG+T Q V K+E G + + + I+E+L + F + Sbjct: 7 LKQCRKQKGISQAELASKLGVTQQAVGKWESGKSSPDPATVARIAEILSTTADFLLGLYR 66 Query: 79 TVCSDISSEENNVMDF 94 V + + EE ++ Sbjct: 67 PVSNVTTPEERFFGNY 82 >gi|191638861|ref|YP_001988027.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190713163|emb|CAQ67169.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327382909|gb|AEA54385.1| hypothetical protein LC2W_2053 [Lactobacillus casei LC2W] gi|327386093|gb|AEA57567.1| hypothetical protein LCBD_2071 [Lactobacillus casei BD-II] Length = 344 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 37/59 (62%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ + IR RR+ LG++QE+L +G++ V +EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSIWEKGVSYPDITLLPALARILGTDVN 59 >gi|318062605|ref|ZP_07981326.1| helix-turn-helix domain-containing protein [Streptomyces sp. SA3_actG] gi|318080566|ref|ZP_07987898.1| helix-turn-helix domain-containing protein [Streptomyces sp. SA3_actF] Length = 365 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R+ GMSQ L + + + + E G RV A L +++ L P++ F Sbjct: 7 IGERIAEARLAAGMSQGDLASKVALDRTAMVRIEAGDRRVSALELSRLAQALGVPVAHFL 66 Query: 75 DVSPTV 80 P Sbjct: 67 SRPPAA 72 >gi|289433492|ref|YP_003463364.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169736|emb|CBH26272.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 111 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 2/98 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDILFELAKIFNKRL 62 Query: 71 SFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF P + ++ D ++ + + Y Sbjct: 63 DDFFPERNLPPADERGMTIAAHIDDDVTDEELRDILAY 100 >gi|289168842|ref|YP_003447111.1| transcriptional regulator [Streptococcus mitis B6] gi|288908409|emb|CBJ23251.1| transcriptional regulator [Streptococcus mitis B6] Length = 141 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--F 74 R++ R +SQ++L E +G+ ++ +Q +E G +++ + Q +++ + + + Sbjct: 2 NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAQQLADFFGVSVGYLLGY 61 Query: 75 DVSPTVCSDISSEENNV 91 + + T+ + + E + Sbjct: 62 EEAKTLENILKDAEEYL 78 >gi|266619976|ref|ZP_06112911.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288868440|gb|EFD00739.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 260 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+++ R G+SQE L E L T Q + K+E +L +S++ + P+ F Sbjct: 1 MNFGEKLFNLRKEKGLSQEALAEQLNTTRQAISKWENNHGYPETEKLLKLSDIFQVPVDF 60 Query: 73 FFDVSPTVCSDISSE----ENNVMDFISTPDGLQLNRYF 107 + + + S + ++S+ +NRYF Sbjct: 61 LLKETTGIENQNSGNIYVTREMAVSYLSSES--MVNRYF 97 >gi|309778439|ref|ZP_07673354.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308913802|gb|EFP59627.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 211 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+G+N L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGMNYPTFDTLEKIMDVLGVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E V F+ + L Sbjct: 68 -ELLSGEWKYVNQAEKEVCQFLRIEERL 94 >gi|160916303|ref|ZP_02078510.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] gi|158432027|gb|EDP10316.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] Length = 258 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G+SQE L E +G T Q + K+E +L +S + E + Sbjct: 1 MSLGEKIFKLRKEKGLSQEALAEQVGTTRQAISKWENDQGFPETEKLLRLSNIFEVSTDY 60 Query: 73 FFDVSPTVCSDISS 86 TV Sbjct: 61 LLKDEKTVKDSEEH 74 >gi|302670002|ref|YP_003829962.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394475|gb|ADL33380.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 174 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R +SQ +L LG T + VQKYE G L I+ L + Sbjct: 7 IGNRIKEARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGVLNEIANNLNISPA 63 >gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 179 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+++R R I ++QE+L E ++ + + E G + HI EVL + Sbjct: 1 MNIGQKLRNLRKIKDLTQEELAERTDLSKGYISQIESGQSSPSMESFLHILEVLGTSPEL 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF P E + D Sbjct: 61 FFKEKPKEKVLYPKAEQAIYD 81 >gi|167628808|ref|YP_001679307.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] gi|167591548|gb|ABZ83296.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] Length = 119 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 8/121 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI+ R G++Q +L + L ++ Q + +E+G + + ++ +LE+ F Sbjct: 4 IGNRIKHLRKQRGLTQPQLAKLLNVSPQVISNWERGYTPTIAPESIDKLASILETTSDFL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S S S P+G+ L R ++ K R I+EL+ + V +E Sbjct: 64 LGRSTASISSSLEALEK-----SWPEGIKVLRRANEKLTPEKKR-VILELIDTYVRTEGN 117 Query: 133 Y 133 + Sbjct: 118 H 118 >gi|315300972|ref|ZP_07872315.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] gi|313630659|gb|EFR98449.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] Length = 111 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF P V + ++ D ++ + + Y Sbjct: 63 DDFFPERNLPPVDERGMTVAAHIDDDVTDEELRDILAY 100 >gi|322373053|ref|ZP_08047589.1| putative repressor protein [Streptococcus sp. C150] gi|321278095|gb|EFX55164.1| putative repressor protein [Streptococcus sp. C150] Length = 229 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 V + E N + L+L + ++ + + ++ Sbjct: 64 EHEIVEVYLELNEEN------RQEALRLTKALLEEQEAEKQKA 100 >gi|313897568|ref|ZP_07831110.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957520|gb|EFR39146.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 302 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 7/87 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R GMSQE+L L ++ Q V K+E ++ I + + + Sbjct: 1 MKFGEKLQKLRKEKGMSQEELAARLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVTMDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 D ++ F ++ + Sbjct: 61 L-------LKDEGGDQPQEQGFYASRE 80 >gi|260174286|ref|ZP_05760698.1| transcriptional regulator [Bacteroides sp. D2] gi|315922556|ref|ZP_07918796.1| transcriptional regulator [Bacteroides sp. D2] gi|313696431|gb|EFS33266.1| transcriptional regulator [Bacteroides sp. D2] Length = 135 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++G++I R + GM+Q LGE LG+T Q + K E+ ++ +L+ +++ L Sbjct: 11 HLGRKIERIRRLRGMTQTDLGELLGVTKQAISKMEQSE-KIDDDKLKQVADALGV 64 >gi|58338178|ref|YP_194763.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227902636|ref|ZP_04020441.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] gi|58255495|gb|AAV43732.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227869542|gb|EEJ76963.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] Length = 174 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I R SQE+L E L ++ Q V K+E G + ++ +S++ + + Sbjct: 46 QKIAQLRNDNNWSQEELAEKLNVSRQSVSKWESGQAKPDLDKIIALSDIFDVSTDYLLKD 105 Query: 77 SPTVCSDISS 86 S+ S+ Sbjct: 106 DNEEKSNPST 115 >gi|89098807|ref|ZP_01171688.1| hypothetical protein B14911_05089 [Bacillus sp. NRRL B-14911] gi|89086483|gb|EAR65603.1| hypothetical protein B14911_05089 [Bacillus sp. NRRL B-14911] Length = 299 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 19/125 (15%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+GK+I+ R+ G+ Q +L E + T Q+ K E+G +S L I+ L IS+F Sbjct: 7 NLGKKIKDLRVSRGLKQSELSEGI-CTQAQISKIERGDIIPLSSTLYLIARRLGVDISYF 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 F ++ ++ V + ++ QL +++ +VR ++V+ EK Sbjct: 66 FGMNGIASNE------YVEEVMT-----QLYNARKKLEYDQVR----DIVK---VEEKNP 107 Query: 134 RTIEE 138 R +E Sbjct: 108 RILEN 112 >gi|223933764|ref|ZP_03625736.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223897568|gb|EEF63957.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 289 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R++ RR LG SQ++L E G+ Q Q+ + EKG GA L +++ L+ + Sbjct: 3 VLLATRLKNRRKELGWSQKELAE--GVCDQGQISRIEKGTYMPGADLLHALAKKLQVRMD 60 Query: 72 FFFDVSPTV 80 +FFD + Sbjct: 61 YFFDEEESE 69 >gi|166030939|ref|ZP_02233768.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] gi|166029206|gb|EDR47963.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] Length = 179 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R+ G++QE+L + ++ + + E+ + + L I + L + +S Sbjct: 1 MDIGKKIKELRVAKGLTQEELADRSELSKGFISQLERDLTSPSIATLMDILQCLGTTVSE 60 Query: 73 FFDVSPTVCSDISSEE 88 FF P +E+ Sbjct: 61 FFQEEPEDQIVFQNED 76 >gi|262280383|ref|ZP_06058167.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258161|gb|EEY76895.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 209 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +VG IR R G+SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 36 HVGTNIRSLRDERGLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLSVD 91 >gi|253573993|ref|ZP_04851335.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846470|gb|EES74476.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRIR R +QE+L E + + + E+G + L+ I+ L+ P F Sbjct: 7 VGKRIREYRKQKNWTQEQLAEAASLHYSYIGGVERGDRNISLETLEKIAVALDVPAGDLF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +E+ + + + + L Sbjct: 67 RTEVVLDKQQLLDEHMKLVSSRSAEEIALI 96 >gi|291557731|emb|CBL34848.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 302 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R G++QE+L + LG+T Q V K+E G L I+++ + I + Sbjct: 7 KQLQKLRKQSGITQEQLADKLGVTAQAVSKWENGS-YPDGDLLPKIADIFDVSIDNLYGR 65 Query: 77 SPTVCS 82 CS Sbjct: 66 GEEKCS 71 >gi|56695338|ref|YP_165686.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677075|gb|AAV93741.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 193 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++ ++L G++ + + E+ L IS L I++FF Sbjct: 13 IGTRMRELRKARGLTLKQLAAATGLSIGYLSQLERQAADPSVRALNVISTALGVGINWFF 72 Query: 75 DVSPTVCSDISSE 87 P SD ++ Sbjct: 73 -PDPDTVSDPEAD 84 >gi|239827077|ref|YP_002949701.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239807370|gb|ACS24435.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 108 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG+RIR R +S +L + LGI+ ++ + E G + S +Q E + P+ Sbjct: 3 INKKVGERIREVRKKYNLSMMQLADELGISQPRLSRIENGDQEIPISLIQKFCERFDIPL 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 S FF S N ++ Sbjct: 63 SSFFRSLEKDEKAGDSLINEQLE 85 >gi|332300885|ref|YP_004442806.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177948|gb|AEE13638.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 355 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+RIR R + GM+ +L + +G++ + E+G + + L +SE L+ PI +F Sbjct: 6 GERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPIDYF 63 >gi|322412563|gb|EFY03471.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 248 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 16/134 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS 71 +++G +++ RR+ + +S E+L + LG++ + +YEKG +V L+ IS++L + + Sbjct: 1 MDIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVPTEVLEKISKILNTNPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ-KIIELVRSIVSSE 130 +F S T + + + I T L+ + RQ K++ + + Sbjct: 61 YFMGWSDTP---TPVQTQTLQEIIVTSKQLE-----------QPRQEKVLSFANEQLEEQ 106 Query: 131 KKYRTIEEECMVEQ 144 K ++ EE Q Sbjct: 107 SKVVSMHEELFSVQ 120 >gi|322420390|ref|YP_004199613.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320126777|gb|ADW14337.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 37/74 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +SQEKL E +G+ +Q+ + E G + L+ I++ L+ I F Sbjct: 8 LGLRIREVRKARQLSQEKLAEKVGVDPKQISRIEGGKSAPSLDTLEAIAKHLQVEIKDLF 67 Query: 75 DVSPTVCSDISSEE 88 D V D ++ Sbjct: 68 DFQHLVPEDKIEDQ 81 >gi|260460417|ref|ZP_05808669.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034062|gb|EEW35321.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 238 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 8/78 (10%) Query: 5 KKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + P+ + ++ +G+ +R R LG++ L I+ + K E G+ Sbjct: 35 TQNPHAIRDTREKVLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSL 94 Query: 57 SRLQHISEVLESPISFFF 74 + LQ +S L P++ FF Sbjct: 95 TTLQALSRALGVPVTAFF 112 >gi|291456508|ref|ZP_06595898.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291381785|gb|EFE89303.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 161 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHKLFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 73 FFDVSP 78 ++ Sbjct: 61 LMEMPD 66 >gi|187477795|ref|YP_785819.1| phage repressor [Bordetella avium 197N] gi|115422381|emb|CAJ48906.1| Putative phage repressor [Bordetella avium 197N] Length = 360 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 17/103 (16%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R +S E+L E +G+++Q VQ++E G +RL+ +++ L + + + Sbjct: 32 QRIKQLREQRQLSMEQLAELVGVSWQTVQQWENGKTAPKRARLEAVAKALMTTVEYL--- 88 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY---FIQIDDVKVR 116 + +S E V IS R F I + KVR Sbjct: 89 -----AMGASSEGRVDSSISD------ARAPWPFQSIPEDKVR 120 >gi|326692332|ref|ZP_08229337.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 248 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R LG++Q+ + L I++Q V +E+ + A + I E P++F Sbjct: 1 MAIGNQIKALRKSLGLTQQTFADKLFISYQSVSNWERAKSHPTAEMMLTIIETFHLPLNF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 F S D+ E+ + FI + Sbjct: 61 FM-PSDQNSQDLDDEQLILAAFIKS 84 >gi|332364707|gb|EGJ42476.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 205 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ + + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGIEPVVQ 70 >gi|81428204|ref|YP_395204.1| prophage lsa1 XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609846|emb|CAI54893.1| Putative prophage lsa1 DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 259 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R+ +SQ +L E L I+ Q + YEKG+ + +++ + PI + V Sbjct: 3 NNIRKLRLEQNVSQAELAEVLKISRQAISNYEKGLREPKLETWKKLADYFDVPIGYLQGV 62 Query: 77 SPTVCSDI 84 +D+ Sbjct: 63 DGVNINDL 70 >gi|172057739|ref|YP_001814199.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990260|gb|ACB61182.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 294 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 22/146 (15%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++++G I+ R +Q +L + + + ++ K E G N LQ I+E Sbjct: 2 NQLNVSIGNEIKRIRQERNWTQSELCQGI-CSQAEISKIENGRNSPTVDLLQQIAERFHV 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY------FIQIDD---VKVRQKI 119 P+S FF +EE + + + L R F +ID + ++I Sbjct: 61 PVSSFF----------INEEKKTNFRMRDQEIIHLTRLNQYAEIFKRIDQYLAEETDKEI 110 Query: 120 IELVR--SIVSSEKKYRTIEEECMVE 143 I L+R ++ E+ C+ + Sbjct: 111 IILLRYHKLIIEEQTNIIDYRTCISQ 136 >gi|332967905|gb|EGK06997.1| XRE family transcriptional regulator [Kingella kingae ATCC 23330] Length = 89 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR + R M+QEKLG +G + ++ +YEKG ++ + L I+++L+ P ++ Sbjct: 10 KRFKEARKAKKMTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLVWIAQILDVPPAY 69 Query: 73 FF 74 FF Sbjct: 70 FF 71 >gi|313886599|ref|ZP_07820312.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923955|gb|EFR34751.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] Length = 363 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+RIR R + GM+ +L + +G++ + E+G + + L +SE L+ PI +F Sbjct: 14 GERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPIDYF 71 >gi|253572159|ref|ZP_04849563.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251838339|gb|EES66426.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 136 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 17/118 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP--- 69 +++G++I R + GM+Q LG+ LGIT Q V K E ++ R++ ++E L Sbjct: 10 LHIGRKIERVRRLRGMTQTDLGDLLGITKQAVSKME-QTEKLDDERVKQVAEALGVTEEG 68 Query: 70 ------------ISFFFDVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 + F++ S ++I + N ++ S ++L ++I+ K Sbjct: 69 LKKFTEETVLYYTNNFYENSNATATNIGTISNLENINHFSMDQAVKLFEELLKIEREK 126 >gi|163813865|ref|ZP_02205259.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] gi|158450735|gb|EDP27730.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] Length = 351 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ LG++ V K+EKG S L ++ +L+ ++ Sbjct: 1 MRIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNE 60 Query: 73 FFDVSPTVCS 82 F + Sbjct: 61 LFSFHEELTE 70 >gi|148378839|ref|YP_001253380.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932486|ref|YP_001383224.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934537|ref|YP_001386771.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288323|emb|CAL82400.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928530|gb|ABS34030.1| HTH domain protein [Clostridium botulinum A str. ATCC 19397] gi|152930451|gb|ABS35950.1| HTH domain protein [Clostridium botulinum A str. Hall] Length = 373 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+N+GK I +R G++QE+L +G++ V K+E G + L ++ + Sbjct: 3 DLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVD 62 Query: 72 FFFDVSPTVCSD 83 SP + + Sbjct: 63 ELLGYSPQLTKE 74 >gi|295094077|emb|CBK83168.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 189 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 12/110 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R ++QE+L E G+T + V ++E G N S L +++ + I D Sbjct: 7 GSFLRELRKEKQLTQEQLAERFGVTSRSVSRWETGSNMPDLSILVELADFYDVDIRDIID 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK--VRQKIIELV 123 D++ EE + LQL + + + +R +I +V Sbjct: 67 GE-RKGEDMNKEE---------KERLQLVADYAETEKNTLLMRLRIFSIV 106 >gi|291520506|emb|CBK75727.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 97 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R +SQ +L LG T + VQKYE G L I+ +L + Sbjct: 7 IGNRIKQARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGILNEIANILNISPA 63 >gi|264679862|ref|YP_003279771.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210377|gb|ACY34475.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 104 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 49/100 (49%), Gaps = 9/100 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+R++ R+ G+SQ+ LG G + ++ +YE G+++ ++ ++ VL P++ Sbjct: 9 GERLKQARLAAGLSQKMLGIEAGLDPFVASTRINRYELGIHKPDLLTVRKLATVLRVPVA 68 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 FF+ + +++ +++ + + R + I Sbjct: 69 FFYADTDDEIAELLLRYG-----LTSKEIREKIRNLLAIS 103 >gi|269794016|ref|YP_003313471.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269096201|gb|ACZ20637.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 489 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Query: 1 MVGNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M + D+ +G+R+R R G++ E L E G+ Q+ + E G+ S L Sbjct: 1 MTERSERTTSTDLLTLGRRVRHFRTGAGLTLEDLAERTGVDTSQLSRIENGLREPRLSLL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEE 88 ++ L P++ +P E Sbjct: 61 DAVAGALGVPVATLLASTPPTRRAGLEIE 89 >gi|303326709|ref|ZP_07357151.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] gi|302862697|gb|EFL85629.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] Length = 108 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 39/76 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRIR R+ G+SQEKL E GI+ + + + E+G + ++ ++ L + Sbjct: 7 ILLGKRIRELRVKHGLSQEKLSELSGISSRHISEMERGESNPSFQVMEQLTFALGVSMKE 66 Query: 73 FFDVSPTVCSDISSEE 88 FFD + +E Sbjct: 67 FFDFEHHADDEAIRDE 82 >gi|295108419|emb|CBL22372.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 124 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 42/84 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + ++IR R G+SQE L E GI ++KYE G+ + +L+ I++ LE Sbjct: 26 DMEINEKIRYFRKQRGISQELLAERTGINVNTIRKYEIGIRKPKVEQLKKIADGLEISAI 85 Query: 72 FFFDVSPTVCSDISSEENNVMDFI 95 F D+ +D+ + + F Sbjct: 86 EFLDIEIENEADLIAMLKKISPFF 109 >gi|291549706|emb|CBL25968.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 345 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R GM+QE++ LG+T V K+E ++ L I+ +L+ + Sbjct: 1 MDIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + E MD + + +G + Sbjct: 61 LLSFHEKLSDTEIEEIIRKMDRMFSEEGYE 90 >gi|50914507|ref|YP_060479.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|40218541|gb|AAR83195.1| phage repressor protein [Streptococcus pyogenes] gi|50261586|gb|AAT72354.1| UmuD/MucA-like protein [Streptococcus pyogenes] gi|50903581|gb|AAT87296.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 229 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ RR+ + +SQ + L + +E G N L ++ +L+ P+++F Sbjct: 6 RLKQRRLEIKLSQTAIANQLNVHRSAYHNWENGRNTPNQKNLTALAAILDVPVTYF 61 >gi|323353424|ref|ZP_08087957.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121370|gb|EFX93133.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 205 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ + + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGIEPVVQ 70 >gi|320120590|gb|EFE29126.2| GTP pyrophosphokinase [Filifactor alocis ATCC 35896] Length = 271 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G +QEKL E L ++FQ V +E+ + L ++E+L+ +S Sbjct: 1 MNIGMNIRRLREERGFTQEKLAEKLNVSFQAVSAWEREEYKPDLDNLIKLTEILDVSLSA 60 Query: 73 FFDVSPT 79 + T Sbjct: 61 IVEQQET 67 >gi|125717272|ref|YP_001034405.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497189|gb|ABN43855.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 205 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGMEPVVQ 70 >gi|325957710|ref|YP_004293122.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus 30SC] gi|325334275|gb|ADZ08183.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus 30SC] Length = 125 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 36/73 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I R SQE+L E L ++ Q V K+E G ++ ++ +S + + + Sbjct: 5 QKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDYLLKD 64 Query: 77 SPTVCSDISSEEN 89 + S+ S++++ Sbjct: 65 NNEKESNSSTKKH 77 >gi|260905597|ref|ZP_05913919.1| transcriptional regulator [Brevibacterium linens BL2] Length = 483 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 11/137 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R G++ +LGE +G Q+ E G + L I++ L + ++ Sbjct: 20 IGRRIRFFRKQRGLTLTELGEQVGRAASQISTIENGKRETSVTLLSAIAKALHTEVAELI 79 Query: 75 DVSPTVCSDI--SSEENNVMDFISTPDGLQLNR-------YFIQIDDVKVRQKIIELVRS 125 D +P E N + + GL R I V +++++ +++ Sbjct: 80 DPTPVDGRQALELEAERNQASPMYSALGLPQVRIKSLPHDALEAI--VGLQRQLGQVLER 137 Query: 126 IVSSEKKYRTIEEECMV 142 ++ ++ R E Sbjct: 138 RAATPEEARRANRELRE 154 >gi|323126871|gb|ADX24168.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 26/127 (20%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++L+R G SQ + E +G++ Q K+EKG+++ L + + + P +F + Sbjct: 5 EKLKLKRTEHGFSQLSIAERIGVSKQAYSKWEKGISQPTNENLIKLENLFKVPAGYFNEE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + L L + Q++ + I VRS+VSS+ K + Sbjct: 65 ----------------------EILNL---YHQLNSPNQSKAI-TYVRSLVSSQNKVSHL 98 Query: 137 EEECMVE 143 +E + E Sbjct: 99 IQETLYE 105 >gi|254393361|ref|ZP_05008507.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294811335|ref|ZP_06769978.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326439932|ref|ZP_08214666.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197706994|gb|EDY52806.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294323934|gb|EFG05577.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 400 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 3/97 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+ D ++G RI R + ++Q L + G++ V K E G++ + ++ VL Sbjct: 1 MPHSQDDHIGARIADYRKLRHLTQAGLAQRAGVSRTTVAKIEAGLSPATPPIVAAVARVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 E ++ + P + + + ++ +S L L Sbjct: 61 EVDVAVL-NGQPYLSELQADHLDRMIAPLSD--ALDL 94 >gi|222053908|ref|YP_002536270.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563197|gb|ACM19169.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 150 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 68/134 (50%), Gaps = 8/134 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+++ RM ++Q++L + G+ + + K E+G L IS+ L P++ Sbjct: 5 IGSRLKMLRMERSLTQKELAVMVSGGLDYTYIGKIERGEQLPSLKILLKISDALSVPVAS 64 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPD-GLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF D SDI+S E + ++ + + G QL + +++ D + +IE+++ + Sbjct: 65 FFQDELFAAASDIASSE---LRYLISEETGRQLVKA-LKLVDKEDFPLLIEIIKVLGRHR 120 Query: 131 KKYRTIEEECMVEQ 144 K ++ + E ++ Sbjct: 121 KTTKSDQGEETEQE 134 >gi|313669549|ref|YP_004049974.1| hypothetical protein Sulku_2772 [Sulfuricurvum kujiense DSM 16994] gi|313156746|gb|ADR35421.1| protein of unknown function DUF955 [Sulfuricurvum kujiense DSM 16994] Length = 354 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RI R G+S L + +G++ + KYEK + L +S+ L +FF Sbjct: 3 GERIARARKTAGLSLRGLADQVGVSQTAIAKYEKNQIHPDSQMLLKLSQALGVKSGYFF 61 >gi|228961481|ref|ZP_04123092.1| Prophage Lp3 protein 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798195|gb|EEM45197.1| Prophage Lp3 protein 2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 206 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRI++ R G+SQ++L E L +T Q V YEKG + L IS +L P+ + + Sbjct: 2 KRIKIARQRKGVSQKELAEKLNMTQQAVSYYEKGSRVPDENILLEISRILTVPVEYLTEE 61 Query: 77 SPTVCS 82 + Sbjct: 62 TNDPEG 67 >gi|331002934|ref|ZP_08326447.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413227|gb|EGG92601.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] Length = 177 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R++ G++QE+L + ++ + + E + + L I + L I Sbjct: 1 MEIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENDITSPSIATLLDILQCLGVEIKD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 FFD T + +EE+ + + +LN I Sbjct: 61 FFD-EETETQVVFTEEDYFI-----KEDKELNNTIKWI 92 >gi|325289343|ref|YP_004265524.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964744|gb|ADY55523.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 109 Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 11 VDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V G+RI RR +L ++Q+ + E G++ + E + L I EVL+ Sbjct: 3 IDYKVLGERIAKRRKVLNLTQDDVAEATGLSNNHISNIENNHSIPSIETLLKICEVLDIT 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 +F +D + N + L+L +FI Sbjct: 63 PDYFLLGIVRHKNDGLLSQINQKIKLCETKKLELVDHFI 101 >gi|295108966|emb|CBL22919.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 351 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ LG++ V K+EKG S L ++ +L+ ++ Sbjct: 1 MRIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNE 60 Query: 73 FFDVSPTVCS 82 F + Sbjct: 61 LFSFHEELTE 70 >gi|21218451|ref|NP_632000.1| hypothetical protein pLP9000_09 [Lactobacillus plantarum] gi|20853812|gb|AAM26929.1| unknown [Lactobacillus plantarum] Length = 112 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R +Q+ L E L ++ Q + K+E G RL IS + + + Sbjct: 1 MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60 Query: 73 FFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQID 111 ++ I + + N+ +F+ + + + I Sbjct: 61 LIKGDDSLKKSIVITKNAKAQTNIWEFMRSTGWMMVIAIIYLIT 104 >gi|304439932|ref|ZP_07399826.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371671|gb|EFM25283.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 138 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RIR R I G+SQ++L E LG++ Q + K+E + ++ +S+ E + Sbjct: 1 MNLSDRIRELRKIKGISQDELAEKLGVSRQAISKWENEQSIPDIDKIIMLSDYFEVSTDY 60 Query: 73 FFDVSPTVCS 82 TV S Sbjct: 61 LLKGVETVKS 70 >gi|239617046|ref|YP_002940368.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] gi|239505877|gb|ACR79364.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] Length = 351 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R+ MS KL E +G++ + KYE+ + + L +S+ L + + Sbjct: 1 MSIGSRIKQARIRNNMSLRKLSEKVGVSAMAISKYERDEDVPSSKVLIRLSKALNVKVEY 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|324992103|gb|EGC24025.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324994197|gb|EGC26111.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327472822|gb|EGF18249.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 205 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGMEPVVQ 70 >gi|210610950|ref|ZP_03288675.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] gi|210152250|gb|EEA83257.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] Length = 198 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-ISFF 73 +GK I+ +R ++Q++ + LG + + +QKYE G + L+ I+ L P Sbjct: 17 IGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQELL 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F D ++ E +F + D + ++ D Sbjct: 77 FAKDTNTPKDNTTAEYPAYEFHTMSDVINALFAITELTD 115 >gi|284007380|emb|CBA72775.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 100 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ N+G+ IR +R L +S L LGI+ Q + +YE+G R+ L +S VL+ I Sbjct: 12 INYNIGQMIRKKRQKLQISAADLSALLGISQQHLSRYERGEVRINVEWLIKVSRVLDIAI 71 Query: 71 SFFF 74 +F Sbjct: 72 ESYF 75 >gi|323485286|ref|ZP_08090635.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum WAL-14163] gi|323401322|gb|EGA93671.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum WAL-14163] Length = 141 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 11/135 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGA 56 MV KK +G I+ R G+SQE L G + K E G N V Sbjct: 1 MVDKKK---DFLKILGNNIKKYRDDKGLSQEALANLCGWNTDNARSTISKIESGTNDVPT 57 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 S+L+ I+E L + + S SE ++ + + + F ++ D R Sbjct: 58 SKLKIIAEKLGVSVCDLMNCSNIQEQ---SESVELVKQVYDEETKFVISSFTKL-DAVDR 113 Query: 117 QKIIELVRSIVSSEK 131 K+IE + +++ EK Sbjct: 114 IKVIERINTLLDDEK 128 >gi|251795604|ref|YP_003010335.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543230|gb|ACT00249.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 215 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R + S + L E +G+T + +Q+YE+G +R+ RL+ ++ L+ + + Sbjct: 15 GANIKKYRDLRNYSLQVLAEKVGLTKKTIQRYEQGEHRIDTERLKALAAALDVTVLQLTE 74 Query: 76 VSPTVCSDISSEENNV 91 + E NV Sbjct: 75 GAYEKLGIEVDESENV 90 >gi|229029511|ref|ZP_04185592.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] gi|228731793|gb|EEL82694.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] Length = 181 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + GIT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|146298395|ref|YP_001192986.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152813|gb|ABQ03667.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 131 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 10/129 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + M QE L + LG Q + E + ++L I++ L Sbjct: 9 HIGRKISRIRELRDMKQEALAQALGTNQQAISTIENSET-IDEAKLIEIAKALGV----- 62 Query: 74 FDVSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +P S E N + + G N I + K++EL +V EK Sbjct: 63 ---TPEAIKSFSEENVFNYFNTFTDSHGNFGNFASGAICNFNPLDKVVELYERLVQVEKD 119 Query: 133 YRTIEEECM 141 E+ M Sbjct: 120 KVEYLEKLM 128 >gi|115334658|ref|YP_764504.1| immunity repressor protein [Geobacillus phage GBSV1] gi|84688608|gb|ABC61304.1| immunity repressor protein [Geobacillus phage GBSV1] Length = 148 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R+ R G++QE+LG + +T + YE G L+ +++ L+ I + Sbjct: 5 QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDYLLGR 64 Query: 77 SPTVCSDI 84 T +D Sbjct: 65 DNTQPTDT 72 >gi|84685724|ref|ZP_01013621.1| probable transcriptional regulator [Maritimibacter alkaliphilus HTCC2654] gi|84666390|gb|EAQ12863.1| probable transcriptional regulator [Rhodobacterales bacterium HTCC2654] Length = 201 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 15/117 (12%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V +VG+ IR R M+ +L G + + + E+G L+ ++++L Sbjct: 16 NAVAHHVGEDIRSLRKTRAMTLAQLAGAAGRSVGWLSQVERGRTTPSVRDLEQLADLLGV 75 Query: 69 PISFFFDVSPTVCSD------------ISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ISFFF S + I S+E+ +++ + +P L+ F I V Sbjct: 76 NISFFFRSSRRAPEEQGLVLRAADRPTIGSDESGLVEELLSP---TLSGSFEMIRSV 129 >gi|283835271|ref|ZP_06355012.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] gi|291068429|gb|EFE06538.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 108 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQ 60 K I + DI +R++ R+ G+SQ++LG G + ++ +YEKGV+ + Sbjct: 2 KTINHYNDIF-CRRLKQARLASGLSQKRLGIAAGIDEFVASTRINRYEKGVHEPNTEIVL 60 Query: 61 HISEVLESPISFFFDVSPTVCS 82 +S VL P+++F+ + Sbjct: 61 KLSAVLRVPVAYFYAEDDDLAE 82 >gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688943|ref|ZP_07631389.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578220|gb|ADL52232.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 226 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R G++QE+ E +G++ Q V K+E G + RL IS + + I Sbjct: 5 QKLQALRKEKGLTQEEFAETIGVSRQAVAKWEAGQSYPDLDRLIEISNLYKVSID 59 >gi|222032723|emb|CAP75462.1| Repressor protein [Escherichia coli LF82] Length = 216 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L ++ L+ + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDYLIK 66 Query: 76 VSPTVCSDISSEENNV 91 ++ + ++ Sbjct: 67 GEESLSNIAYHSRHDP 82 >gi|168784916|ref|ZP_02809923.1| irep [Escherichia coli O157:H7 str. EC869] gi|261225385|ref|ZP_05939666.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261255362|ref|ZP_05947895.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|6318606|gb|AAF06963.1|AF157599_2 Eco0109IREP [Escherichia coli] gi|189374949|gb|EDU93365.1| irep [Escherichia coli O157:H7 str. EC869] gi|240119359|dbj|BAH79222.1| putative transcriptional regulator C.EcoO109I [Escherichia coli O157:H7] Length = 101 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G++QE+LG +GI ++ +YEKG + S + I+++L P+S+F Sbjct: 5 RLKKARLNAGLTQEQLGILVGIDECSASARMNQYEKGKHMPDFSLTKKIADLLNVPVSYF 64 Query: 74 FDVSPTVCS 82 + + Sbjct: 65 YTPEDDLAE 73 >gi|302544943|ref|ZP_07297285.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302462561|gb|EFL25654.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 397 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV---NRVGASRLQHISEVL 66 P D ++G R+R R G+SQ L ++ ++K E+G R+ H++ L Sbjct: 2 PDDAHIGARLRTIRKRRGLSQRDLAAASDVSLSLIRKLEQGEIADTRM--ETAHHLAVAL 59 Query: 67 ESPISFFFDVSPTVCSDISSEE 88 P S + +D ++EE Sbjct: 60 RVPTSSLLERDDEEPADETAEE 81 >gi|317133873|ref|YP_004089784.1| transcriptional regulator, XRE family [Ruminococcus albus 7] gi|315450335|gb|ADU23898.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 208 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI+ R+ G+SQ +L LG + + K E G + S++ I+E+L+ S+ Sbjct: 5 IGKRIKEARIKKGLSQTELAGKLGYKSRSSINKIETGGRDIPKSQVVKIAEILDLTPSYL 64 Query: 74 FDVSPTVCSDISSEEN 89 + +I S E Sbjct: 65 MGWENSPAHNILSREK 80 >gi|222084519|ref|YP_002543048.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721967|gb|ACM25123.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 189 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + ++I +G RI+ R+ GM+ ++L ++ + + E+ AS L + L Sbjct: 1 MDDDLEIAIGARIKQLRIARGMTLDELANASAVSRAMISRIERAEASPTASLLARLCAAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 +S FF S ++ + + P+ Sbjct: 61 GLSLSSFFAEEEEDVSPLARSDAQPI--WRDPET 92 >gi|255282221|ref|ZP_05346776.1| LexA repressor [Bryantella formatexigens DSM 14469] gi|255267169|gb|EET60374.1| LexA repressor [Bryantella formatexigens DSM 14469] Length = 206 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR +R +GM+QE+L LG + K E G N + S++ ++ L + +S+ Sbjct: 4 IGIRIREQREAIGMTQEELASKLGYKNKSSIAKIETGANDIVQSKVIEFADALNTTVSYL 63 Query: 74 FDVSPTVCS 82 T + Sbjct: 64 MGWEKTNVN 72 >gi|225575279|ref|ZP_03783889.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] gi|225037475|gb|EEG47721.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] Length = 341 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E G++ Q + K+E ++ S++ +SE+ + + Sbjct: 1 MLLSEKILTLRKKNGWSQEELAEKCGVSRQSISKWEGNLSTPELSKIVLLSELFQVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +D +E + + + L Sbjct: 61 LLKEDVQPQTDTDAELPPMEAPSHSLRQVTLAEA 94 >gi|291521013|emb|CBK79306.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 345 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R GM+QE++ LG+T V K+E ++ L I+ +L+ + Sbjct: 1 MDIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + E MD + + +G + Sbjct: 61 LLSFHENLSDTEIEEIIRKMDRMFSEEGYE 90 >gi|183600898|ref|ZP_02962391.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] gi|188019224|gb|EDU57264.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] Length = 95 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 39/73 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ IR+ R+ G++ +LG+ +G++ QQ+ +YE+G + + S I V+ Sbjct: 12 INSEIGEFIRMIRIKKGLTGAELGKLIGVSQQQISRYERGYHTLSLSDFTFILSVMNVSF 71 Query: 71 SFFFDVSPTVCSD 83 F S SD Sbjct: 72 LDFISYSSFFKSD 84 >gi|332798146|ref|YP_004459645.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695881|gb|AEE90338.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 100 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS- 71 +N+G RI+ R+ G+ +L E +GIT + E G LQ I + L +S Sbjct: 1 MNIGHRIKQIRIAKGLQGIQLAEKVGITNVYLSYLENGTKIPSIETLQKICDALGITLSE 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FF D + + + NV + +P L+L F++ Sbjct: 61 FFMDENANLPPEYQELIENVK--VLSPKQLELLNEFLK 96 >gi|330467327|ref|YP_004405070.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328810298|gb|AEB44470.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] Length = 363 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+++R R+ LG+SQ+ L +G+ + K E G R+ A L +S L+ + + Sbjct: 10 VGEQVRQARLSLGISQQDLATMVGLDRTMLAKVEAGSRRLDALELAKLSRALKVSMEYLI 69 Query: 75 DVSPTVCSDISSE--ENNVMDFISTPDGLQLN 104 PTV S ++ E + + + L++ Sbjct: 70 QPPPTVLSRRAAPLTEETDTEAARSSERLEIA 101 >gi|297528604|ref|YP_003669879.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297251856|gb|ADI25302.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 148 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R+ R G++QE+LG + +T + YE G L+ +++ L+ I + Sbjct: 5 QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDYLLGR 64 Query: 77 SPTVCSDI 84 T +D Sbjct: 65 DNTQPTDT 72 >gi|225567835|ref|ZP_03776860.1| hypothetical protein CLOHYLEM_03908 [Clostridium hylemonae DSM 15053] gi|225163313|gb|EEG75932.1| hypothetical protein CLOHYLEM_03908 [Clostridium hylemonae DSM 15053] Length = 255 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RIR R M+ E L + + + KYE G + L ++V P+ Sbjct: 29 KQVGERIRFYRKQEKMTLEMLAAKMNKSKATISKYENGTIVMDIGTLYDFADVFRIPVYC 88 Query: 73 FFDV 76 D Sbjct: 89 LIDD 92 >gi|332664458|ref|YP_004447246.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333272|gb|AEE50373.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 352 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+ R + G+S + L + + +T Q + KYEKG G++ L +S+ L + FF Sbjct: 6 GQRLTSARKMAGLSLQNLADKMENAVTRQALNKYEKGEMMPGSTVLIRLSKALNVTVDFF 65 Query: 74 FDVSPTVCSDISSEENNVMDFIS-TPD--GLQLNRYF 107 F S E + +S T + ++ R F Sbjct: 66 FSEPDQKVELQSIEFRKKISRLSKTAEVAVIEKARAF 102 >gi|322411261|gb|EFY02169.1| Hypothetical phage associated protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 169 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G++Q+ L + +G+ F+ +Q +E G + + + Q +++ + + Sbjct: 2 NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQTLADFFGVSVGYL 58 >gi|219853616|ref|YP_002470738.1| hypothetical protein CKR_0273 [Clostridium kluyveri NBRC 12016] gi|219567340|dbj|BAH05324.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 186 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 15/107 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R G++ + + E G++ + ++E+G+ + L I+ VL I++ Sbjct: 8 MNIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNVRINY 67 Query: 73 FFDVSPTVCSDISSEENNV---------------MDFISTPDGLQLN 104 FFD S ++ V D + +P+ ++L Sbjct: 68 FFDDEEKELIIRSYDQPFVRQINKAIYKSLSRYPEDKMLSPELIELL 114 >gi|153952958|ref|YP_001393723.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146345839|gb|EDK32375.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 179 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 15/107 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R G++ + + E G++ + ++E+G+ + L I+ VL I++ Sbjct: 1 MNIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNVRINY 60 Query: 73 FFDVSPTVCSDISSEENNV---------------MDFISTPDGLQLN 104 FFD S ++ V D + +P+ ++L Sbjct: 61 FFDDEEKELIIRSYDQPFVRQINKAIYKSLSRYPEDKMLSPELIELL 107 >gi|319946274|ref|ZP_08020514.1| transcriptional regulator PlcR [Streptococcus australis ATCC 700641] gi|319747656|gb|EFV99909.1| transcriptional regulator PlcR [Streptococcus australis ATCC 700641] Length = 288 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L MSQ++L E GI Q Q+ + E G GA L +S L+ + +FF+ Sbjct: 8 RLKNRRKELKMSQKELAE--GICKQGQISRLESGEYTPGADFLYALSRKLKVSMDYFFE- 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + + + +F +NR + + Sbjct: 65 -----EHVEQKIDELTEFKKIARIFIMNRNYESLK 94 >gi|239625419|ref|ZP_04668450.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239519649|gb|EEQ59515.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 141 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + +G+RIR R G++QE+L LG+ V KYE G V + + L ++E+LE Sbjct: 1 MELGERIRSLRKKKGLTQEELASKLGLQKSAVAKYENGRVTNIKRATLFKMAEILEVSPG 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 D GL + + + + R K++E Sbjct: 61 ELMYGKEDKGQD--------------DHGLAVLSGYYGMLNKAGRTKVLE 96 >gi|319784815|ref|YP_004144291.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170703|gb|ADV14241.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 238 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 8/78 (10%) Query: 5 KKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + P+ + ++ +G+ +R R LG++ L I+ + K E G+ Sbjct: 35 TQNPHAIRDTREKVLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSL 94 Query: 57 SRLQHISEVLESPISFFF 74 + LQ +S L P++ FF Sbjct: 95 TTLQALSRALGVPVTAFF 112 >gi|262201416|ref|YP_003272624.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084763|gb|ACY20731.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 93 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N K PV + G+RIR RR LG+SQE +GI + Q+ K E+G V + Sbjct: 6 MSENAKSALKPVLVEFGRRIRARREELGLSQEAAAVSIGIHWTQLGKVERGQRSVRVENI 65 Query: 60 QHISEVLESPISFFFDVSPTVCSD 83 I+ L + D D Sbjct: 66 VKIAAGLSTTPGALLDGISAHVGD 89 >gi|291539157|emb|CBL12268.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 184 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-ISFF 73 +GK I+ +R ++Q++ + LG + + +QKYE G + L+ I+ L P Sbjct: 7 IGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQELL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F D ++ E +F + D + ++ D Sbjct: 67 FAKDTNTPKDNTTAEYPSYEFHTMSDVINALFAITELTD 105 >gi|325264127|ref|ZP_08130859.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324030611|gb|EGB91894.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 201 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 37/77 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ RR L MSQE + + LGI+ Q V K+E G + + L ++ + E IS Sbjct: 1 MALSENIKARRTQLKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELAFLFEISISE 60 Query: 73 FFDVSPTVCSDISSEEN 89 D + E+ Sbjct: 61 LVDPQTYAEEQAAQEQK 77 >gi|225376313|ref|ZP_03753534.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] gi|225211689|gb|EEG94043.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] Length = 110 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ RR LG++QE + L + + E G + L I+ +L + +F Sbjct: 9 IGLKIKQRRQELGITQEYIANALDVNPSHISNIECGRANPSLTALIKIANILSCSVDYF 67 >gi|314935353|ref|ZP_07842706.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313656688|gb|EFS20427.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +I+ R MSQEKL E LG++ + +E+ V+ + I+++ ++ Sbjct: 5 IGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWERQVSNPDLKTILEITKLFNVSLN 61 >gi|221232058|ref|YP_002511210.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|220674518|emb|CAR69079.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] Length = 286 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ +R G SQ+ L E GI Q Q+ K E+G A L ++ L+ P+ +FFD Sbjct: 7 KLKAKRKEKGFSQKTLSE--GICEQSQISKIERGNYMPAADLLYKLANRLQVPLDYFFDE 64 Query: 77 SPTVCSDISSEENNVMDFISTP--DGLQ 102 + S+I+ + + + L+ Sbjct: 65 QIEMTSNITPFKKLAEKLLEDRNYEDLE 92 >gi|24461679|gb|AAN62248.1|AF440524_35 putative transcriptional regulator [Pseudomonas aeruginosa] Length = 181 Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R + G+S L LGI+ Q+ K E G ++ S I+++L+ P S F Sbjct: 7 IRNQRNLKGISLRSLARELGISASQLSKIETGKAKLTVSVALKIADILQVPASKFLSTGK 66 Query: 79 TVCSD 83 + Sbjct: 67 PQATG 71 >gi|313897216|ref|ZP_07830760.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957937|gb|EFR39561.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 212 Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R + G+SQE+L E G++ Q V K+E + ++ +S+ + Sbjct: 5 ERIQYLRKMKGISQEELAEKAGVSRQAVSKWESDQSTPDVEKIIIMSDYFGVTTDYILKG 64 Query: 77 SPTVCS 82 TV S Sbjct: 65 IQTVES 70 >gi|218673688|ref|ZP_03523357.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 99 Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 91 Query: 69 PISFFF 74 P++ FF Sbjct: 92 PLTAFF 97 >gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] Length = 295 Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ + +++ R GMSQE+L E LG++ Q V K+E G + IS + + I Sbjct: 1 MDMTFAENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIPDIENIMAISMLFDISI 60 Query: 71 SFFFDVSPTVCSDISSE 87 + +E Sbjct: 61 DDLLSNERDSKKVVETE 77 >gi|58696655|ref|ZP_00372209.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58537179|gb|EAL60281.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 279 Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 23/121 (19%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L I+ L I Sbjct: 145 IGQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 204 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 P+ + + I++ + + + LV+S+ K + Sbjct: 205 -----------------------PETRESKKLLSLINEYREPESLDALVKSLSEDMKSGK 241 Query: 135 T 135 Sbjct: 242 E 242 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 + G +Q +L +G+T+Q+V YE G + L I+ VL V D Sbjct: 1 MRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLLPEPVIVREDS 60 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +E + L L + + ++ K+ + + LVR + SEK Sbjct: 61 YEDE----------EILYLTKIY---ENQKLGKIVPSLVRFVHISEK 94 >gi|253574140|ref|ZP_04851482.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] gi|251846617|gb|EES74623.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] Length = 290 Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 3/103 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R+ GM+ +LG +G+T + K EKG + + L ISE + + Sbjct: 8 LGERIKKCRLEKGMTLRELGSQVGMTSSALSKVEKGSVSITSENLFAISEAFGVSVDWLL 67 Query: 75 DVSPTVCSDISSEENNV---MDFISTPDGLQLNRYFIQIDDVK 114 D + N V I + ++ F + D + Sbjct: 68 TGKEAQFKDEGYDTNEVRKEATPIFFDEEWEVVSQFRNLSDEE 110 >gi|220921966|ref|YP_002497267.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946572|gb|ACL56964.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 227 Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R+ LGM+QE+L E ++ + K E+G+ + I+ L IS Sbjct: 4 IGNNVRNARLRLGMTQEQLAEAANVSQTTIDKIERGLTKRSKYLPW-IAIALSVDIS--- 59 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ ++ + +E +V + +S P L Sbjct: 60 ELDNSLRYSPTEKEKDVGEVVSRPHLLA 87 >gi|160895181|ref|ZP_02075954.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] gi|156863215|gb|EDO56646.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] Length = 101 Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +RIR R ++G++Q L L I+ V ++ G ++ L +++ + Sbjct: 3 MDISERIRELREVIGITQSNLASALNISRSAVNAWKMGTSKPSIDTLVDLADFFHVSTDY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + +IS +D I L+L YF Sbjct: 63 LLGRNELQLIEISGVSPEGVDII-----LRLVHYFSA 94 >gi|15900101|ref|NP_344705.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|14971630|gb|AAK74345.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] Length = 288 Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L MSQ +L E GI Q Q+ + E G GA L +++ L+ + +FFD Sbjct: 8 RLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLNALAKKLKVSMDYFFDE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + SE + T + +Y ++++VK Sbjct: 66 QVVEKVEELSEFKKLAQTFITNRNYESLKYIYELENVK 103 >gi|294792345|ref|ZP_06757493.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] gi|294457575|gb|EFG25937.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] Length = 128 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 12/122 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R ++ ++LGE L + + +E A ++ I+ V I + Sbjct: 2 KTLGQRIKQLRKFQHLTGDELGEKLNVGRSAISLWETDARMPSAEMIKLIANVFNVSIDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D + P+ +L +D +R +++ RS+ SE + Sbjct: 62 LLTGEHPTTDDG---------YYYDPEVAELAEEIK--NDPDLR-LLLDAKRSLSKSEME 109 Query: 133 YR 134 Sbjct: 110 SI 111 >gi|315499237|ref|YP_004088041.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315417249|gb|ADU13890.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 267 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IRL R ++ + +GIT ++++ E G + AS L +S +LE P+S FF Sbjct: 16 IGRNIRLFREQKRVTLSDMALGIGITSDRLKRIESGKLKPSASELLRVSRILERPVSDFF 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI--DDVKVRQKIIELVR 124 + + +D + L R + I K R+ +LV+ Sbjct: 76 GGEGHLPPGVRP-----IDLWFSQSILPHARAYFGIAYSLTKHREAANDLVQ 122 >gi|297587580|ref|ZP_06946224.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] gi|297574269|gb|EFH92989.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] Length = 327 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 +I L R ++QE+L E LG++ Q V K+E G + +++ +S+V + + Sbjct: 6 KIILLRKKNNLTQEELAEKLGVSRQSVSKWEMGNSIPDINKIIQLSDVFGVKTDYLLKDE 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + SD + EE IS D + Sbjct: 66 IDDIEYSDDTVEELETKKTISVEDANDFMSAY 97 >gi|86360696|ref|YP_472584.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284798|gb|ABC93857.1| probable transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 190 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +R R LG++ L GI+ + K E G + LQ +S L P++ Sbjct: 1 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|307265008|ref|ZP_07546569.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919993|gb|EFN50206.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 130 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 12/127 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++QE L + LGI+ + YE L+ I++ I + + Sbjct: 6 RLKELRKEKNLTQEDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDYLLGRT 65 Query: 78 P-----TVCSDISSEENNVMDF---ISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIV 127 ++ S++ +++F + + L+L F Q K ++II ++++I Sbjct: 66 DIRSPVDEITEAVSDDPELLEFWNELKDREDLKLL--FKQTKKLSPKEIKQIIRIIKAIE 123 Query: 128 SSEKKYR 134 E K Sbjct: 124 EEEDKGE 130 >gi|296491938|ref|YP_003662405.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] gi|289176825|emb|CBJ92994.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] Length = 136 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R+ R G+SQ +LGE LGIT Q + KYE+GV ++ I+++L+ P Sbjct: 19 NRLIEARKFRGLSQRELGEALGITDSETAGQHISKYERGVRLPPYKTVREIAKILDMPPC 78 Query: 72 FFFDVSPTVCSD 83 +F+ + ++ Sbjct: 79 YFYIDDDDLSAE 90 >gi|228994652|ref|ZP_04154474.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM 12442] gi|228765084|gb|EEM13816.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM 12442] Length = 188 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R SQ +L + L +T Q V K+E L +S++ + + Sbjct: 18 MELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWENDKCAPDIINLVQLSDLYNVSLDY 77 Query: 73 FFDVSPTVCSDISSEEN 89 + + +S E N Sbjct: 78 LIKSDKELQNHLSLENN 94 >gi|229000364|ref|ZP_04159924.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17] gi|228759391|gb|EEM08377.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17] Length = 188 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R SQ +L + L +T Q V K+E L +S++ + + Sbjct: 18 MELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWENDKCAPDIINLVQLSDLYNVSLDY 77 Query: 73 FFDVSPTVCSDISSEEN 89 + + +S E N Sbjct: 78 LIKSDKELQNHLSLENN 94 >gi|268592006|ref|ZP_06126227.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312398|gb|EFE52851.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 101 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + +VG +R R M+ ++L E + I+ QQV +YE G + + +L I VL Sbjct: 2 KANIISSHVGNYLRKSRKEKNMTGKQLAELINISQQQVSRYETGSSSLSLDQLNEILTVL 61 Query: 67 E 67 + Sbjct: 62 D 62 >gi|154500021|ref|ZP_02038059.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] gi|150271619|gb|EDM98876.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] Length = 296 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K I+ R GMSQE++ L + Q V K+E G++ A L ++E+L +S + Sbjct: 6 KNIKHFRKAKGMSQEEMAVKLNVVRQTVSKWENGLSVPDADVLIRMAELLNVSVSQLLGI 65 Query: 77 SPTVCSDISSEEN 89 SD E Sbjct: 66 EAEDKSDKDLSEK 78 >gi|83951509|ref|ZP_00960241.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83836515|gb|EAP75812.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 143 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L LG+ + ++K+E ++ A+RL ++ +L I + Sbjct: 31 GDRLAGAREASGMTQTQLARRLGVKEKTIEKWENDLSEPRANRLSMLAGLLNVSILWLIS 90 Query: 76 VS---PTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQID 111 P + ++ E + D + +Q L R +I+ Sbjct: 91 GDGDAPEAPGESAASEATLDDLLRELRQVQAVLTRSAARIE 131 >gi|259502231|ref|ZP_05745133.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169849|gb|EEW54344.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 126 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 29/54 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+SQE+L + L ++ Q V K+E G ++ I+++L+ + Sbjct: 7 QLANLRQAAGLSQEQLADQLHVSRQAVSKWENGSTLPDIDKIVQIADILQVSLD 60 >gi|225180882|ref|ZP_03734330.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168363|gb|EEG77166.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 255 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 42/101 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+IR+ R GM+Q++L I+ V + E G + ++ IS+ L + + Sbjct: 138 GKKIRMTRETKGMTQKQLANAAQISPGLVAQLETGKVQPSLKTIERISKALSVSVCYLIL 197 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 I+ + + + P L + +D ++R Sbjct: 198 EQEDAEGIIAGITPELRELLFDPRVQMLIGHICTLDSEQLR 238 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G ++R R G++ E+LG L ++ + + E G LQ IS PIS F Sbjct: 70 GDKLRAMREEKGLTLEELGRHLDLSVTYLSEIELGERTPSIQTLQKISRYFNVPISLF 127 >gi|254360461|ref|ZP_04976610.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] gi|153091001|gb|EDN73006.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] Length = 218 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ RR L ++Q+ L L G++ V ++E + + + +S VL+ IS+ Sbjct: 6 LGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTTKPNSENILDLSTVLQCDISWL 65 Query: 74 FDVSPTV 80 + Sbjct: 66 LRGNGES 72 >gi|310828555|ref|YP_003960912.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] gi|308740289|gb|ADO37949.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] Length = 268 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G SQE L E +G++ Q V K+E G++ + L +SE+ E + ++ Sbjct: 5 ERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSNPDINNLVFLSEIFEVSLD---EL 61 Query: 77 SPTVCSDISSEENNV 91 S +E + Sbjct: 62 IKGEAPQASEKEETI 76 >gi|16129529|ref|NP_416088.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. MG1655] gi|89108412|ref|AP_002192.1| predicted regulator for DicB [Escherichia coli str. K-12 substr. W3110] gi|170020075|ref|YP_001725029.1| transcriptional repressor DicA [Escherichia coli ATCC 8739] gi|170081237|ref|YP_001730557.1| Qin prophage; regulator for DicB [Escherichia coli str. K-12 substr. DH10B] gi|218554136|ref|YP_002387049.1| transcriptional repressor DicA [Escherichia coli IAI1] gi|238900790|ref|YP_002926586.1| Qin prophage; putative regulator for DicB [Escherichia coli BW2952] gi|300939073|ref|ZP_07153765.1| transcriptional repressor DicA [Escherichia coli MS 21-1] gi|307310860|ref|ZP_07590506.1| transcriptional regulator, XRE family [Escherichia coli W] gi|118631|sp|P06966|DICA_ECOLI RecName: Full=HTH-type transcriptional regulator dicA; AltName: Full=Repressor protein of division inhibition gene dicA gi|41278|emb|CAA30349.1| unnamed protein product [Escherichia coli] gi|1742572|dbj|BAA15275.1| predicted regulator for DicB [Escherichia coli str. K12 substr. W3110] gi|1787853|gb|AAC74643.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. MG1655] gi|169755003|gb|ACA77702.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169889072|gb|ACB02779.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. DH10B] gi|218360904|emb|CAQ98476.1| putative transcriptional regulator for DicB; Qin prophage [Escherichia coli IAI1] gi|238863388|gb|ACR65386.1| Qin prophage; predicted regulator for DicB [Escherichia coli BW2952] gi|260449307|gb|ACX39729.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|284921476|emb|CBG34547.1| repressor protein of division inhibition gene [Escherichia coli 042] gi|300456019|gb|EFK19512.1| transcriptional repressor DicA [Escherichia coli MS 21-1] gi|306909038|gb|EFN39534.1| transcriptional regulator, XRE family [Escherichia coli W] gi|315060877|gb|ADT75204.1| Qin prophage; predicted regulator for DicB [Escherichia coli W] gi|315136211|dbj|BAJ43370.1| transcriptional repressor DicA [Escherichia coli DH1] gi|323378556|gb|ADX50824.1| helix-turn-helix domain protein [Escherichia coli KO11] gi|323940355|gb|EGB36547.1| helix-turn-helix protein [Escherichia coli E482] Length = 135 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 11/115 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RIR RR L +Q L + L I+ V ++E+G + L +S+VL+ + Sbjct: 5 NLTIGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERGDSEPTGKNLFALSKVLQCSPT 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-------VKVRQKI 119 + E+ + +P L+L F + + ++R ++ Sbjct: 65 WILFGDEDKQPTPPVEKPVAL----SPKELELLELFNALPESEQDTQLAEMRARV 115 >gi|291550659|emb|CBL26921.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus torques L2-14] Length = 298 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I +R LGM+Q++L E L ++ + V K+E+G+ S + E+L I+ Sbjct: 4 VKIGKYIAGKRKALGMTQKQLAEKLNMSDKSVSKWERGICLPDVSVYMELCEILGISINE 63 Query: 73 FFDVSPTVCSDISSEENN 90 F ++ + + Sbjct: 64 FLAGEDIDAENVEKKSED 81 >gi|224823653|ref|ZP_03696762.1| putative phage repressor [Lutiella nitroferrum 2002] gi|224604108|gb|EEG10282.1| putative phage repressor [Lutiella nitroferrum 2002] Length = 324 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 5/102 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR+ R + G++Q +L + +G++ Q + E G N+ G L I++ L ++ Sbjct: 97 LGKRVTHARELKGLTQLELAKRVGVSAQTINFVENGRNK-GTKHLLAIAKALGVSATWL- 154 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D +++S V + + L + +I + ++ VR Sbjct: 155 DSGKGSMTEVSLRPIEVWE---DEEQLAQSGEYIFLPELSVR 193 >gi|42520474|ref|NP_966389.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630361|ref|YP_002727152.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630755|ref|YP_002727546.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|42410213|gb|AAS14323.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592342|gb|ACN95361.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592736|gb|ACN95755.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 303 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 23/128 (17%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + + +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L I+ L Sbjct: 162 TDSIYYRIGQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALS 221 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 I P+ + + I++ + + + LV+S+ Sbjct: 222 VNIKVLL-----------------------PETRESKKLLSLINEYREPESLDALVKSLS 258 Query: 128 SSEKKYRT 135 K + Sbjct: 259 EDMKSGKE 266 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 13/117 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R++ G +Q +L +G+T+Q+V YE G + L I+ VL Sbjct: 15 IGQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLL 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 V D +E + L L + + ++ K+ + + LVR + SEK Sbjct: 75 PEPVIVREDSYEDE----------EILYLTKIY---ENQKLGKIVPSLVRFVHISEK 118 >gi|58699926|ref|ZP_00374515.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533557|gb|EAL57967.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 293 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 23/128 (17%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + + +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L I+ L Sbjct: 176 TDSIYYRIGQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALS 235 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 I P+ + + I++ + + + LV+S+ Sbjct: 236 VNIKVLL-----------------------PETRESKKLLSLINEYREPESLDALVKSLS 272 Query: 128 SSEKKYRT 135 K + Sbjct: 273 EDMKSGKE 280 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 13/117 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R++ G +Q +L +G+T+Q+V YE G + L I+ VL Sbjct: 29 IGQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLL 88 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 V D +E + L L + + ++ K+ + + LVR + SEK Sbjct: 89 PEPVIVREDSYEDE----------EILYLTKIY---ENQKLGKIVPSLVRFVHISEK 132 >gi|315652455|ref|ZP_07905442.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315485293|gb|EFU75688.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 177 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 6/92 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E + + L I + L I Sbjct: 1 MDIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENNITSPSIATLLDILQCLGVQIKD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FFD T + +EE+ + + +LN Sbjct: 61 FFD-EETETQVVFTEEDYFI-----KEDKELN 86 >gi|315612466|ref|ZP_07887379.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315447|gb|EFU63486.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 188 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 1/87 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L + L Q KYE G + + ++E + + Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSTPYLLGL 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 +D S + + GL L Sbjct: 63 DDDSATDESRKMTPFQSLVRDR-GLSL 88 Score = 37.1 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 10/109 (9%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 G+S +++ E GI + V Y +G A Q +SE I + ++ Sbjct: 82 RDRGLSLKEISEATGIGYSTVGNYNQGSRIPNARNAQLLSEYFGVSIPYLLGYEENFTAN 141 Query: 84 -----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---QKIIELVR 124 IS E + FIS +L + +I++ D K R ++I E+VR Sbjct: 142 KPNATISIELVKELSFISEKKS-KLLQEYIEL-DKKERDIIKQIKEIVR 188 >gi|225019677|ref|ZP_03708869.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] gi|224947522|gb|EEG28731.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] Length = 261 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++++ R G+SQE+L E LG++ Q V K+E G + L +S++ + Sbjct: 5 EKLQILRKEAGLSQERLAEKLGVSRQAVSKWESGQSTPDIENLSALSDLFGVTLD 59 >gi|258611915|ref|ZP_05243102.2| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290892307|ref|ZP_06555302.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293596363|ref|ZP_05230968.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|293597004|ref|ZP_05266446.2| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300764870|ref|ZP_07074859.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] gi|258607134|gb|EEW19742.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290558133|gb|EFD91652.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293584645|gb|EFF96677.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293595206|gb|EFG02967.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300514357|gb|EFK41415.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] Length = 117 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 9 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 68 Query: 71 SFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF P V + + ++ D ++ + + Y Sbjct: 69 DDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAY 106 >gi|16799238|ref|NP_469506.1| hypothetical protein lin0161 [Listeria innocua Clip11262] gi|16412580|emb|CAC95394.1| lin0161 [Listeria innocua Clip11262] Length = 117 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 9 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 68 Query: 71 SFFF 74 FF Sbjct: 69 DDFF 72 >gi|229827176|ref|ZP_04453245.1| hypothetical protein GCWU000182_02561 [Abiotrophia defectiva ATCC 49176] gi|229788794|gb|EEP24908.1| hypothetical protein GCWU000182_02561 [Abiotrophia defectiva ATCC 49176] Length = 109 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 15/118 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK+I+ R+ GM+QE+L E L + YE + S L+ I+++L P+ Sbjct: 7 ITLGKKIKEYRLKRGMTQEELAERLFSRKSTISDYENDKIDIKISILREIAKILGMPLFC 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F D + +Q+ QI ++R+ I+ V + E Sbjct: 67 FLCEQNADTDD---------------EIMQMAMALKQIKSKELRKAAIKQVMILAEME 109 >gi|326790576|ref|YP_004308397.1| hypothetical protein Clole_1473 [Clostridium lentocellum DSM 5427] gi|326541340|gb|ADZ83199.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 189 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +G RI+ R G SQ + E +G+ YE ++ I E+L+ IS Sbjct: 7 IQIGTRIKEIRKSKGFSQAYMAEKIGVNRTTYSNYENNNREPNLKTIEKICEILDVTIS 65 >gi|170742019|ref|YP_001770674.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196293|gb|ACA18240.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 201 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ +G++IR R I G++ +++ +G++ + + E+ +++ L+ I+ +L Sbjct: 16 NEQELLLGEQIRALRKIKGLTLQQIAGEIGVSIGYLSQIERNRSKLPIGVLKRIATILGV 75 Query: 69 PISFFFD---VSPTVCSDI 84 +S+FF + P D Sbjct: 76 QLSWFFQPQTLGPPEEQDF 94 >gi|210634335|ref|ZP_03298071.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] gi|210158862|gb|EEA89833.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] Length = 152 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ V R G++QE+L L IT Q V ++E G G ++ I+ L+ P+ Sbjct: 6 DVLV-----QLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKLIARELDVPVM 60 Query: 72 FFFDVSPTVCS 82 D+ C Sbjct: 61 RLLDMPEHYCQ 71 >gi|322688843|ref|YP_004208577.1| hypothetical protein BLIF_0656 [Bifidobacterium longum subsp. infantis 157F] gi|320460179|dbj|BAJ70799.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 161 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 73 FFDVSP 78 ++ Sbjct: 61 LMEMPD 66 >gi|251782740|ref|YP_002997043.1| putative transcriptional regulator PlcR [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391370|dbj|BAH81829.1| putative transcriptional regulator PlcR [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 290 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ +L+R LG+SQ+ L + GI Q Q+ K E+G A L +S+ LE + +F Sbjct: 5 LSEKFKLKRKELGISQQSLAD--GICEQSQISKIERGNFIPSADLLYKLSQRLEVTLDYF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 F+ V S +S+ +N + + + L Y +I+ Sbjct: 63 FNDEIEVKSSLSNFKNLSIHLLDDRNYDDL-EYIYKIE 99 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+RL R + M+QE L E +G+T Q + + E+G L + L + ++ FF Sbjct: 6 VGGRLRLYRQLRDMTQESLSEVIGVTKQHLGQIERGQCNPSLDFLSKAAAALNTQVANFF 65 >gi|27366450|ref|NP_761978.1| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|27362651|gb|AAO11505.1| Putative transcriptional regulator [Vibrio vulnificus CMCP6] Length = 105 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 25/118 (21%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R ++Q+ LG +G+ ++ YEKG + S L+ +++ L P+++F Sbjct: 9 RLKKARKHAKITQKNLGIMIGMDESSASGRMNHYEKGRHTPDISTLRKMADALGVPLNYF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 F +L ++ + K R ++++ V+S+ S++ Sbjct: 69 FCEDEASA--------------------ELATAISRLSEAK-RNQVLKFVKSLEESDE 105 >gi|300909985|ref|ZP_07127445.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] gi|300892633|gb|EFK85993.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] Length = 234 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 17/119 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK P+ RI R G++ +++ + +G+ + +YE G Q Sbjct: 1 MSENKK-PH-------NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQ 52 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP--DGLQLNRY---FIQIDDVK 114 ++ + + + I +N V+ I + +L +++ K Sbjct: 53 KLANYFDVTVYYL----QGYGLSIDQAKNKVISIIHNAYFEDTELTSAVDSYLRTISPK 107 >gi|228476741|ref|ZP_04061407.1| transcriptional regulator [Streptococcus salivarius SK126] gi|228251612|gb|EEK10713.1| transcriptional regulator [Streptococcus salivarius SK126] Length = 229 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 V + E N + L+L + ++ + + ++ Sbjct: 64 EHEIVEVYLELNEEN------RQEALRLTKALLEEQEAEKQKA 100 >gi|240143885|ref|ZP_04742486.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|257204077|gb|EEV02362.1| DNA-binding protein [Roseburia intestinalis L1-82] Length = 298 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 40/80 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I +R LGM+Q++L E LG + + V K+E+G+ S + E+L ++ Sbjct: 4 VKIGSYIAEKRKKLGMTQKQLAEKLGKSDKSVSKWERGICLPDVSVYLELCEILGISLNE 63 Query: 73 FFDVSPTVCSDISSEENNVM 92 F +++ + + + Sbjct: 64 FLAGEDIEVTNVEKKSEDTL 83 >gi|254478231|ref|ZP_05091612.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035827|gb|EEB76520.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] Length = 218 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 8/126 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+ Q+ + + LGIT YE+G L+ +S+ I + Sbjct: 93 QRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLLGR 152 Query: 77 SP-----TVCSDISSEENNVMDFIST-PDGLQLNRYFIQID--DVKVRQKIIELVRSIVS 128 + ++ S++ + +F +T + L F Q K ++II ++++I Sbjct: 153 TDIRSPVDEITEAVSDDPELFEFWNTLKEREDLKLLFKQTKKLSPKDIKQIIRIIKAIED 212 Query: 129 SEKKYR 134 E K Sbjct: 213 EEDKEE 218 >gi|187777057|ref|ZP_02993530.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] gi|187773985|gb|EDU37787.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] Length = 181 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 39/84 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IR R ++ + LGE G++ + + E + + + L+ I++ L PI++FF Sbjct: 5 IAEKIRNLRKEKNLTLKDLGEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + +E V + + Sbjct: 65 KSPELHKYLVKKQEREVFELEGSA 88 >gi|253699444|ref|YP_003020633.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774294|gb|ACT16875.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 106 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R +SQE+L E +GI + + + E G + RL+ I+ L + FF Sbjct: 8 LGARIKELRKGRKLSQEELAELIGIEPRHMSRIEVGKSYPSLDRLERIAMALNVDLRDFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 D + ++ ++ N + T + L Sbjct: 68 DFAHLEARPVNVDQINDILKEMTDEDL 94 >gi|160938794|ref|ZP_02086145.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] gi|158437757|gb|EDP15517.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] Length = 230 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G + N VGK I R GMSQE+L + + +T Q V +E G ++ L+ + Sbjct: 4 GGTAMKN----TVGKNIVKLRKEQGMSQEQLAQKIHVTRQAVSNWETGRSQPDLDMLETL 59 Query: 63 SEVLESPI 70 + + I Sbjct: 60 ASAFGTDI 67 >gi|332654275|ref|ZP_08420019.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] gi|332517361|gb|EGJ46966.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] Length = 394 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R GM+Q++L + LG++ + V ++E G + L ++ VL + D Sbjct: 8 QRLRQYRKNKGMTQQELADQLGVSNKTVSRWESGS-YPDVTTLVALARVLGVTVDELLDP 66 Query: 77 SPTVCSDISSEENNVMDF 94 V + S+ N++ F Sbjct: 67 KAPVRTLEKSDWQNLLSF 84 >gi|304315786|ref|YP_003850931.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777288|gb|ADL67847.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 126 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 40/98 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R I ++Q+ + + LG++ + YE+ +Q I++ + + Sbjct: 2 IGDKLKSLRKIKNVTQKDIADYLGVSPSAIGLYEQNRREPDLETVQKIADFFNVSVDYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + D S + + + + G + F + + Sbjct: 62 GRTNKRNVDTSDDVDERLHKVMQELGPDILLAFYDLPN 99 >gi|261344638|ref|ZP_05972282.1| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282567554|gb|EFB73089.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 117 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + G IR R G+S +L + + I+ QQ+ +YE+G+N+ L I+ L Sbjct: 21 NVFSLYCGLVIRKIRKENGISACELAKKVNISQQQMSRYERGINKFSIDMLFDITVALNI 80 Query: 69 P 69 P Sbjct: 81 P 81 >gi|225571052|ref|ZP_03780069.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM 15053] gi|225160133|gb|EEG72752.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM 15053] Length = 279 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I + R ++Q+ L + L +T + + K+E+G++ S L +++VL+ S + Sbjct: 10 GKFICVMRKEKNLTQKDLAQKLDVTDKAISKWERGISCPDISLLIPLAKVLDVTTSELLN 69 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 E V + + D Sbjct: 70 GERASEEQPEHAEAMVEEALHYSD 93 >gi|225572879|ref|ZP_03781634.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|317500124|ref|ZP_07958358.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087647|ref|ZP_08336575.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] gi|225039744|gb|EEG49990.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|316898479|gb|EFV20516.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|330399826|gb|EGG79486.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] Length = 211 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNFPTFDTLEKIMDVLGVMPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E V F+ + L Sbjct: 68 -ELLSGEWKYVNQSEKEVCQFLRIEERL 94 >gi|225017175|ref|ZP_03706367.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum DSM 5476] gi|224950094|gb|EEG31303.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum DSM 5476] Length = 131 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPI 70 + +GKR++L R G++ + + + +G+ VQ+YE G+ ++ L I++VL Sbjct: 3 NREIGKRMKLAREQSGLTLQAVADRVGVAASTVQRYEAGGIEKLKLPVLNAIADVLGVDP 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + T + +NV L L R Q+ K RQKII++ S Sbjct: 63 GWL-----TGSETACAPADNVAQTGEERKLLMLCRRAEQLPPEK-RQKIIDIFES 111 >gi|167768818|ref|ZP_02440871.1| hypothetical protein ANACOL_00135 [Anaerotruncus colihominis DSM 17241] gi|167668990|gb|EDS13120.1| hypothetical protein ANACOL_00135 [Anaerotruncus colihominis DSM 17241] Length = 138 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+R R G +QE+LG+ +G+T + YEK + + + + L +F F Sbjct: 12 KRLREAREKAGFTQEELGKMIGVTGSAITNYEKETSHPKEPIMYALIDALNVEPNFLFQD 71 Query: 77 ----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 S ++E D IS + L R I + + Sbjct: 72 CVHLPQKAKSPGTTEVVPGEDNISLEESNYLLRALGLIQEGQ 113 >gi|167771688|ref|ZP_02443741.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] gi|167666328|gb|EDS10458.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] Length = 110 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR R G+SQE L E +GI+ + E G ++ L +++ L+ F Sbjct: 6 IGQRIRKIRKAHGLSQESLAERVGISNTHMSHIETGNTKLSLPVLVALADALDVCTDDF 64 >gi|222081796|ref|YP_002541161.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726475|gb|ACM29564.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 204 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD+ VG+R+R R+ +S +L GI+ + + E+G++ + + ++ L+ Sbjct: 16 NEVDVLVGRRVRALRLERNLSLAELATRTGISIGALSQIERGMSSLRVRVIWPLAAALDV 75 Query: 69 PISFFFDVSPTVCSDI 84 S +D+ Sbjct: 76 EPSALIVDGGEPVNDL 91 >gi|167749516|ref|ZP_02421643.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702] gi|167657544|gb|EDS01674.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702] Length = 159 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 11/121 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G++Q+ L E LGI+ QKYE+ L I++ + Sbjct: 3 EQLQQLRKSRGLTQDDLAEILGISLSSYQKYERDAISPSYETLCKIADFYHVTTDYLLGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 P + D + P+ + F D VR I++ ++ + + KK + Sbjct: 63 EPA---------TDPFDMLQLPEDQKSVMERFASFPDD-VRAIILDAIKELAEAAKKRQR 112 Query: 136 I 136 + Sbjct: 113 L 113 >gi|332980703|ref|YP_004462144.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698381|gb|AEE95322.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 130 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 14/118 (11%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ G+SQ+++ +G+ KYE G ++ +Q +++ + + S Sbjct: 7 IKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQPDFDTVQKLADFFGVSVDYLLGRSD 66 Query: 79 TVCSDISSEE-------NNVMDFISTPDGLQLNRYFIQIDDVK---VRQ--KIIELVR 124 T SD+ E + + ++ + +++ F +I D+K V++ KIIE+V Sbjct: 67 TRNSDVIEEAIKDDPELERIWNMLNNREEVRVM--FKKIADLKPADVKRILKIIEIVE 122 >gi|229815060|ref|ZP_04445397.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] gi|229809290|gb|EEP45055.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] Length = 155 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + R G++QE+L L IT Q V ++E G G ++ I+ L+ P++ D+ Sbjct: 8 LAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKLIARELDVPVTRLLDMPE 67 Query: 79 TVCS 82 C Sbjct: 68 HYCQ 71 >gi|319776198|ref|YP_004138686.1| putative phage repressor [Haemophilus influenzae F3047] gi|301168972|emb|CBW28569.1| unnamed protein product [Haemophilus influenzae 10810] gi|317450789|emb|CBY87011.1| Putative phage repressor [Haemophilus influenzae F3047] Length = 219 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIR RR L ++Q+ + + G++ + ++E + + L +S VLE + + Sbjct: 6 IGKRIRQRRTELKLTQKDVANAIKGVSHVAISQWESDTTKPNSENLVDLSTVLECDLLWL 65 Query: 74 FDVSPTVCS 82 + + Sbjct: 66 LRGEGSSSN 74 >gi|167749663|ref|ZP_02421790.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] gi|167657416|gb|EDS01546.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] Length = 302 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++++ R G++QE+L LG+T Q V K+E G L I+++ + I + Sbjct: 7 KQLQMLRKQSGITQEQLAAKLGVTAQAVSKWENGS-YPDGDLLPKIADIFDVSIDNLYGR 65 Query: 77 SPTVCS 82 CS Sbjct: 66 GEERCS 71 >gi|160914687|ref|ZP_02076901.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991] gi|158433227|gb|EDP11516.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991] Length = 313 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + IR R G+SQE++ L + Q + K+E ++ A L I+++L+ + D Sbjct: 22 ENIRKYRKECGLSQEEMAVKLHVVRQTISKWETNLSVPDADMLVEIAKLLQVSVEQLLDY 81 Query: 77 SPTVCSDISSEENNVMDFIST--PDGLQL 103 S + +E + + ++ + +L Sbjct: 82 SGKDSLSVDTELARLNEELAKHIKEERRL 110 >gi|323357088|ref|YP_004223484.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273459|dbj|BAJ73604.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 479 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 29/142 (20%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ G++ ++LG +G+ Q+ E G S LQ I+ E+ ++ Sbjct: 10 LGHRIRHHRLARGLTLDELGALVGVAGSQLSLIENGKREPKLSLLQEIARATETEVTELL 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY----FIQ---IDDVKVRQ--------KI 119 P ++L R F Q I VKV + + Sbjct: 70 STEPPNRRAALE--------------IELERAQSSPFFQQLGIPPVKVTKGTTDETIEAV 115 Query: 120 IELVRSIVSSEKKYRTIEEECM 141 + L R + E++ EE Sbjct: 116 LGLHRELQRRERETIASPEEAR 137 >gi|296332860|ref|ZP_06875320.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673206|ref|YP_003864878.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150140|gb|EFG91029.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411450|gb|ADM36569.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 261 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E + T Q + K+E G +L I + E I + Sbjct: 1 MTFGEKLFKLRKEKGLSQEALAEKVNTTRQAISKWENGQGFPETEKLLMIGNIFEVSIDY 60 Query: 73 FFDVSPTVCSD 83 S +D Sbjct: 61 LLKDSVEPRTD 71 >gi|260662799|ref|ZP_05863693.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260552880|gb|EEX25879.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 167 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I+ R+ +SQE+L E ++ + +Q+ E G + L ++ L + F Sbjct: 2 VNNKIKQLRLSKNLSQEQLAEKAKVSVRTIQRMEAG-DDASIETLNLVAGALGVSVKELF 60 Query: 75 DVSPTVCSDISSEENNV 91 D SP + I + E N+ Sbjct: 61 DDSPAQKNKIRNAEENL 77 >gi|254513703|ref|ZP_05125766.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221531933|gb|EEE34990.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 209 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 19/115 (16%) Query: 1 MVGN-KKIPNPV---------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 M N + P+ V ++ +G+ +R R ++ +L + G++ + K E G Sbjct: 1 MAANLTQNPHSVRSGDREKVLEVAIGREVRAFRKQQNITVAELAQLTGLSIGMLSKIENG 60 Query: 51 VNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + LQ +++ L P++ FF + ++ +G++L R Sbjct: 61 NTSPSLTTLQSLADALSVPLTSFFRQFEERREAVHTKAG---------EGVELER 106 >gi|217978763|ref|YP_002362910.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217504139|gb|ACK51548.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 217 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R L ++ +L G++ + K E G S LQ ++ L P+S FF Sbjct: 36 IGAQIRMHRKRLDITGGELAAAAGLSTGMLSKIENGQISPSLSTLQSLARALNQPLSSFF 95 >gi|229541996|ref|ZP_04431056.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326416|gb|EEN92091.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 189 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++QE+LGE ++ + + E+ ++ +I EVL Sbjct: 10 MKIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSIDTFFNILEVLGCTPKE 69 Query: 73 FFDVSPTVCSDISSEEN 89 FFD + EE+ Sbjct: 70 FFDEEEREQKVVYGEED 86 >gi|21221957|ref|NP_627736.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|4678664|emb|CAB41077.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 390 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R + G ++++L + +T V +YE G R +++ ++E L P +FF Sbjct: 19 GARLTQARRLAGWTKKELATKINVTPAAVGQYEAGAIRPRPEQVRRLAEALGMPSAFFTA 78 Query: 76 VSPTVCSDISS 86 P D ++ Sbjct: 79 GRPRAGLDTAA 89 >gi|302523093|ref|ZP_07275435.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302431988|gb|EFL03804.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 191 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G++ L G++ V + E+G + L +++ L P+ FF Sbjct: 12 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNPSYTTLIKLADALRVPVGAFF 71 Query: 75 DVSPTVCSDIS 85 D S + Sbjct: 72 DGSEDAWEPAA 82 >gi|318057227|ref|ZP_07975950.1| hypothetical protein SSA3_04771 [Streptomyces sp. SA3_actG] gi|318075235|ref|ZP_07982567.1| hypothetical protein SSA3_00560 [Streptomyces sp. SA3_actF] Length = 210 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G++ L G++ V + E+G + L +++ L P+ FF Sbjct: 31 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNPSYTTLIKLADALRVPVGAFF 90 Query: 75 DVSPTVCSDIS 85 D S + Sbjct: 91 DGSEDAWEPAA 101 >gi|289434995|ref|YP_003464867.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171239|emb|CBH27781.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 115 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + G+RI+ RR LG + + L E LG++ + +YE G + ++ + L +S +L++ + Sbjct: 1 MQTGERIKKRRKELGYNADYLAEELGVSRSTIFRYENGEIEKLPITILDSLSNILKTTPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + EN +S + + L + +I D + Sbjct: 61 YLMGWVDDGAEHLEDSEN-----LSNDE-INLITNYRKISDRQ 97 >gi|288906392|ref|YP_003431614.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306832439|ref|ZP_07465592.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979406|ref|YP_004289122.1| HTH-type transcriptional regulator rdgA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733118|emb|CBI14699.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304425479|gb|EFM28598.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179334|emb|CBZ49378.1| HTH-type transcriptional regulator rdgA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 166 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R +SQEKL E + ++ Q + K+E+G + +S+ + PI + Sbjct: 1 MEFGEKLKQLRKANHLSQEKLSERIHVSRQAISKWEQGSAIPDTDNIVLLSKFFQVPIEY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|37524551|ref|NP_927895.1| hypothetical protein plu0545 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525105|ref|NP_928449.1| hypothetical protein plu1137 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525114|ref|NP_928458.1| hypothetical protein plu1146 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783975|emb|CAE12840.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784531|emb|CAE13431.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784540|emb|CAE13440.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 111 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI R G++Q +L + L ++ Q VQ +E G R+ S L I+++L + Sbjct: 2 MTLGQRISALRKHAGLTQAQLAQALNVSQQAVQSWEAGRRRIQISVLPEIAKLLSVSLEE 61 Query: 73 FFDVSPTV 80 F Sbjct: 62 LFGEESDT 69 >gi|332798977|ref|YP_004460476.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696712|gb|AEE91169.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 131 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R G+SQ +L + L I+ + YE G + Q +++ P+ + VS Sbjct: 5 RIRKLRNDKGLSQRELAKMLKISPSTIAMYELGKREPDIAMFQRLADFFNVPVEYVMGVS 64 Query: 78 PTV----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D + + +FI ++L D K + ++ +R+ K+ Sbjct: 65 DEPKPWWEKDEEPTDIELEEFIKNNSNIKLM---GDPLDEKAKDDVLMFLRAAHQMIKEK 121 Query: 134 RTIEEECMVE 143 R EEE E Sbjct: 122 RKAEEEVGKE 131 >gi|319938810|ref|ZP_08013174.1| cro/CI family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811860|gb|EFW08126.1| cro/CI family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 189 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--F 74 R+++ R G++Q L + L Q KYE G + + ++E I + Sbjct: 3 NRLKVLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSIPYLLGL 62 Query: 75 DVSPTVCSDISSEE 88 D +P + + S++E Sbjct: 63 DDNPVLVNPGSAKE 76 >gi|310287452|ref|YP_003938710.1| helix-turn-helix motif [Bifidobacterium bifidum S17] gi|311064368|ref|YP_003971093.1| hypothetical protein BBPR_0984 [Bifidobacterium bifidum PRL2010] gi|309251388|gb|ADO53136.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum S17] gi|310866687|gb|ADP36056.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum PRL2010] Length = 161 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 73 FFDVSP 78 ++ Sbjct: 61 LMEMPD 66 >gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 345 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I+ R G +QE++ LG+T V K+E G + L I+ +L + Sbjct: 1 MNIGNVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSNPDIELLAPIARLLHISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + +E MD + + +G + Sbjct: 61 LLSFHENLTDVEITELIQEMDKMFSAEGYE 90 >gi|218528591|ref|YP_002419407.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520894|gb|ACK81479.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 198 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G +IR R +S L ++ + K E G + + I+ L P Sbjct: 15 PLEKALGHQIRRLRRERDLSLSDLSSAADVSQSMISKIEHGAISPSLASINAIASALNVP 74 Query: 70 ISFFFDVSPTV--CSDISSEENNVMDFISTPDG 100 I+ F CS + + ++ T G Sbjct: 75 ITALFAAFEETRDCSHVKHGQGVPIERHGTKSG 107 >gi|16802162|ref|NP_463647.1| hypothetical protein lmo0114 [Listeria monocytogenes EGD-e] gi|46906354|ref|YP_012743.1| repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092250|ref|ZP_00230042.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|47095185|ref|ZP_00232797.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|116871527|ref|YP_848308.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217965783|ref|YP_002351461.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|224498185|ref|ZP_03666534.1| helix-turn-helix domain protein [Listeria monocytogenes Finland 1988] gi|224502962|ref|ZP_03671269.1| helix-turn-helix domain protein [Listeria monocytogenes FSL R2-561] gi|226222753|ref|YP_002756860.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes Clip81459] gi|254827546|ref|ZP_05232233.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254832362|ref|ZP_05237017.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes 10403S] gi|254899558|ref|ZP_05259482.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes J0161] gi|254913239|ref|ZP_05263251.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937620|ref|ZP_05269317.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|254991791|ref|ZP_05273981.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-064] gi|255016940|ref|ZP_05289066.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL F2-515] gi|255022366|ref|ZP_05294352.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-208] gi|255025309|ref|ZP_05297295.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-003] gi|255028080|ref|ZP_05300031.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes LO28] gi|255519835|ref|ZP_05387072.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-175] gi|284803147|ref|YP_003415012.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284996288|ref|YP_003418056.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|12054764|emb|CAC20620.1| AX protein [Listeria monocytogenes] gi|16409473|emb|CAC98329.1| lmo0114 [Listeria monocytogenes EGD-e] gi|46879618|gb|AAT02920.1| putative prophage LambdaLm01, repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47016530|gb|EAL07451.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|47019452|gb|EAL10193.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|116740405|emb|CAK19525.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217335053|gb|ACK40847.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|225875215|emb|CAS03909.1| Putative repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599922|gb|EEW13247.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258610220|gb|EEW22828.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284058709|gb|ADB69650.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284061755|gb|ADB72694.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|293591239|gb|EFF99573.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|307569672|emb|CAR82851.1| repressor protein, putative [Listeria monocytogenes L99] gi|313611579|gb|EFR86184.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria monocytogenes FSL F2-208] gi|328468450|gb|EGF39456.1| hypothetical protein LM1816_04172 [Listeria monocytogenes 1816] gi|328472713|gb|EGF43568.1| hypothetical protein LM220_04442 [Listeria monocytogenes 220] gi|332310528|gb|EGJ23623.1| Bacteriophage-type repressor [Listeria monocytogenes str. Scott A] Length = 111 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF P V + + ++ D ++ + + Y Sbjct: 63 DDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAY 100 >gi|257084636|ref|ZP_05578997.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256992666|gb|EEU79968.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] Length = 246 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRL 59 M + IPN +I G RI++ R L ++ ++ + +G++ V ++EKG ++ + + Sbjct: 1 MNEKENIPNS-NIEFGNRIKVVRTDLNLTMDEFAKRIGVSGKSTVNEWEKGRSKPNKNAM 59 Query: 60 QHISEVLESPISFFFDVSPT 79 + ISE+ P+ +F+ P Sbjct: 60 KKISEISNVPLEWFYFGDPE 79 >gi|83954282|ref|ZP_00963002.1| transcriptional regulator, putative [Sulfitobacter sp. NAS-14.1] gi|83841319|gb|EAP80489.1| transcriptional regulator, putative [Sulfitobacter sp. NAS-14.1] Length = 431 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++ G Q L + +GI+ + E R+G L +I+ L + Sbjct: 4 DALTGSRIRERRVMAGQKQADLAKRIGISASYLNLIEHNRRRIGGKLLLNIAAALGVEPT 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDG 100 + + E + +S P+ Sbjct: 64 ALTEGAEAALIATLREAADDAR-LSGPEA 91 >gi|226323100|ref|ZP_03798618.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] gi|225208290|gb|EEG90644.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] Length = 316 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I +R LG++Q++L E L ++ + V K+E+G+ S + +L I+ Sbjct: 4 IKIGKYIAEKRKALGLTQKQLAEKLNMSDKSVSKWERGICLPDVSIYMELCSILRISINE 63 Query: 73 FFDVSPTVCSDISSEENN 90 F ++ + ++ Sbjct: 64 FLAGEDIGAENVIEKSDS 81 >gi|310828173|ref|YP_003960530.1| transcription regulator [Eubacterium limosum KIST612] gi|308739907|gb|ADO37567.1| transcription regulator [Eubacterium limosum KIST612] Length = 99 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R G +Q++L + LGIT V YE L+ I+ L + F Sbjct: 2 VYFGSKLRQLRQEKGYTQQQLADKLGITKGSVSAYETSAKYPSVDVLRKIAVTLNTSTDF 61 Query: 73 FFDVSPT 79 +S Sbjct: 62 LLGLSDE 68 >gi|257440049|ref|ZP_05615804.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] gi|257197401|gb|EEU95685.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] Length = 209 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R MSQ +L LG+T Q V K+E G + + + ++E+L++ + + Sbjct: 7 LRQCRKQKHMSQAELASLLGVTQQAVGKWESGKSSPDPTTVAKLAEILDTTADYLLGLFD 66 Query: 79 TVCSDISSE 87 + E Sbjct: 67 PTAEGQTEE 75 >gi|227894470|ref|ZP_04012275.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] gi|227863629|gb|EEJ71050.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] Length = 325 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 12/117 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++SE + Sbjct: 1 MRLGQKIADLRKKNNLSQEDLAEEMNVSRQAVSKWESDQSIPDIEKIVNLSEFFGVTTDY 60 Query: 73 FF-DVSPTVC---SDISSEENNVMDFISTPDGLQLNR--YFIQIDDVKVRQKIIELV 123 + +P+ DI++EE + +S L + F + K+R + LV Sbjct: 61 LLKNGTPSFEFKSEDIATEEKMPV--LSD----DLVQKYLFAVKRNSKLRALVAALV 111 >gi|218781614|ref|YP_002432932.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762998|gb|ACL05464.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 184 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 3/75 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK N I+ G+RI R M E L G+ ++K E G N L Sbjct: 1 MPPKKKAKN---ISTGQRIHDLRKDKDMDLETLANETGLAVDTLEKIESGENMPSVGSLL 57 Query: 61 HISEVLESPISFFFD 75 I+ LE +FF + Sbjct: 58 QIARALEVDSAFFLE 72 >gi|288554829|ref|YP_003426764.1| hypothetical protein BpOF4_09080 [Bacillus pseudofirmus OF4] gi|288545989|gb|ADC49872.1| hypothetical protein BpOF4_09080 [Bacillus pseudofirmus OF4] Length = 290 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 20/123 (16%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +DI+ +GK I+ R + G++Q L E + T Q+ E G ++ L IS L Sbjct: 1 MDIHTIGKNIKFYRTLKGLTQNDLAEGI-CTQAQISNIEAGKFIPLSTTLFEISRRLGVD 59 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 ++ FF + D + DFI +NR + +++ EL I++ Sbjct: 60 MTHFFHEASNPRYD------YIQDFIQDVRKQTVNRNY---------KEVYEL---ILAE 101 Query: 130 EKK 132 EK Sbjct: 102 EKN 104 >gi|315031865|gb|EFT43797.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315171137|gb|EFU15154.1| helix-turn-helix protein [Enterococcus faecalis TX1342] Length = 184 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G++IR RM +SQ +L L ++ Q + +E G R L IS + P+ Sbjct: 18 MNTGEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEV 77 Query: 73 FFDVSPTVCSDISSE 87 F + +E Sbjct: 78 FLSEDISEIKKQHTE 92 >gi|291526868|emb|CBK92454.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 190 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R +G++QE+ E L ++ + + ++E G N S L +I+E+ I Sbjct: 6 IGSFLKELRKEMGITQEEFAEKLDVSSRTISRWETGANMPDISLLVNIAEIFNVSIPEII 65 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + + E V + +S Sbjct: 66 NGE-RKSEIMEKEAKKVAEAMSD 87 >gi|256544850|ref|ZP_05472222.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] gi|256399739|gb|EEU13344.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] Length = 78 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R LG+SQ +LG+ +GI+ + K E G I+ L+ I FD+ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALDVCIYQIFDL 62 Query: 77 SPT 79 T Sbjct: 63 DGT 65 >gi|224024133|ref|ZP_03642499.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM 18228] gi|224017355|gb|EEF75367.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM 18228] Length = 192 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++ E+L E G++ +Q++ E+ +N + L I+ L + F Sbjct: 7 IGEKIKALRTAQEITLEELAERTGLSKEQIESIEQNINIPSLAPLVKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 D P + D IS Sbjct: 67 DDQPNENGPVVCRCGEADDTIS 88 >gi|153940644|ref|YP_001392517.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152936540|gb|ABS42038.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|295320504|gb|ADG00882.1| putative transcriptional regulator [Clostridium botulinum F str. 230613] Length = 121 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+R++ R +SQ+ L + LG++ V E G +Q I+ I + Sbjct: 3 NLGERLKELRNEAKLSQKDLAKKLGLSSSTVGMIESGKREGNKETIQKIANFFGVSIDYL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + S +N +D + +Q Sbjct: 63 YGNDVEEITKTESLIDNFLDRLIQEGIIQ 91 >gi|76787968|ref|YP_330681.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77406878|ref|ZP_00783904.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] gi|76563025|gb|ABA45609.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77174510|gb|EAO77353.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] Length = 204 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 31/68 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++QE+L +G++ + ++E G ++ + + +++ + + Sbjct: 2 NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLLGY 61 Query: 77 SPTVCSDI 84 +P D Sbjct: 62 APNKKIDF 69 >gi|327459012|gb|EGF05360.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 205 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGIEPVVQ 70 >gi|153011903|ref|YP_001373116.1| helix-turn-helix domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151563791|gb|ABS17287.1| helix-turn-helix domain protein [Ochrobactrum anthropi ATCC 49188] Length = 176 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 4/106 (3%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G + ++ + +IR R I M + L LG+ Q + +YEK +++ +RL H+ Sbjct: 42 GPMALTGEIEELISSQIRELREIREMPRTVLAPLLGLHHQVLSRYEKATSKLTVARLIHL 101 Query: 63 SEVLES-PISFFFDVSPTVCSDISSEEN---NVMDFISTPDGLQLN 104 EVL++ P+ + V+P + + + E ++ D + T D L L Sbjct: 102 CEVLDTSPMELLYPVAPHLFGETAQEAEMTKSIYDKLRTLDALTLA 147 >gi|295107201|emb|CBL04744.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 148 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R G++QE+L + L IT Q V ++E G G + I+ L+ PI+ ++ Sbjct: 9 ELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDMTKLIARELDVPITELLEMPDHY 68 Query: 81 CS 82 C Sbjct: 69 CQ 70 >gi|229815069|ref|ZP_04445406.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM 13280] gi|229809299|gb|EEP45064.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM 13280] Length = 206 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ R LG+SQ+ L E + ++ Q + +E G L +S V + Sbjct: 1 MELGSHIKEHRTELGLSQDDLAERIYVSRQTISNWECGRTYPDVQSLLLLSNVFGVTVDS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + + +E + +ST Sbjct: 61 LIKGDVETMAQVMNEAVKKYNALST 85 >gi|296453887|ref|YP_003661030.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] gi|296183318|gb|ADH00200.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] Length = 161 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAK 60 Query: 73 FFDVSP 78 ++ Sbjct: 61 LMEMPD 66 >gi|295103878|emb|CBL01422.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii SL3/3] Length = 210 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+SQ +L LG+T Q V K+E G + S + I+E+L + + + Sbjct: 7 LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADYLLGLYR 66 Query: 79 TVCSDISSEENNVMDFIST 97 V + + EE + + Sbjct: 67 PVSNVSAPEERFFGSYTES 85 >gi|227544982|ref|ZP_03975031.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227185043|gb|EEI65114.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 247 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 17/119 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK P+ RI R G++ +++ + +G+ + +YE G Q Sbjct: 14 MSENKK-PH-------NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQ 65 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP--DGLQLNRY---FIQIDDVK 114 ++ + + + I +N V+ I + +L +++ K Sbjct: 66 KLANYFDVTVYYL----QGYGLSIDQAKNKVISIIHNAYFEDTELTSAVDSYLRTISPK 120 >gi|327459409|gb|EGF05755.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] Length = 205 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCS 82 +V Sbjct: 61 LLKGIESVVQ 70 >gi|313625620|gb|EFR95300.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria innocua FSL J1-023] Length = 111 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFF 74 FF Sbjct: 63 DDFF 66 >gi|220927095|ref|YP_002502397.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951702|gb|ACL62094.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] Length = 84 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 8/82 (9%) Query: 47 YEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 YEKG+NRVGA RLQ I+++LE P+S + SD V+ ++TP +L + Sbjct: 7 YEKGLNRVGAGRLQAIADLLEVPVSTLYGGDGHAGSD-------VVALLNTPHAAELLQL 59 Query: 107 FIQIDDVKVRQKIIELVRSIVS 128 F + R ++ + R ++ Sbjct: 60 FDAMP-ATYRGSLLTIARGLLG 80 >gi|229542977|ref|ZP_04432037.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229327397|gb|EEN93072.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 139 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 GN+ + N V R++ R G SQ +L + +G++ + + YE G + L I Sbjct: 5 GNENMDN-VKAIFAARLKKVRAAQGYSQPELAKRVGVSDRNISNYETGYSFPSIKVLYRI 63 Query: 63 SEVLESPISFFFDVSPTVC----SDISSEENNVMDFIS 96 S+VL+ I + ++ V +S+ E +++ +S Sbjct: 64 SQVLKVSIDYLLGLTNHVGLKTNEAVSNPEKKLLETLS 101 >gi|319757788|gb|ADV69730.1| phage repressor protein [Streptococcus suis JS14] Length = 229 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ +R+ +Q ++ LGI K+E G + L I+++L+ P+++F Sbjct: 4 GIRLKEKRIERKFNQSEIAYKLGINRASYSKWESGKSIPNQKNLSAIAKILDVPVTYF 61 >gi|160942797|ref|ZP_02090038.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] gi|158445962|gb|EDP22965.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] Length = 210 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+SQ +L LG+T Q V K+E G + S + I+E+L + + + Sbjct: 7 LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADYLLGLYR 66 Query: 79 TVCSDISSEENNVMDFIST 97 V + + EE + + Sbjct: 67 PVSNVSAPEERFFGSYTES 85 >gi|330863911|emb|CBX74000.1| uncharacterized HTH-type transcriptional regulator ydcN [Yersinia enterocolitica W22703] Length = 206 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +++ R G S + E G++ + + E+G + + L I+ L S Sbjct: 24 RHIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQ 83 Query: 73 FFDVSPTVCSDI 84 F + P + + Sbjct: 84 FLETPPAQSAAL 95 >gi|332161859|ref|YP_004298436.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666089|gb|ADZ42733.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 188 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +++ R G S + E G++ + + E+G + + L I+ L S Sbjct: 6 RHIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQ 65 Query: 73 FFDVSPTVCSDI 84 F + P + + Sbjct: 66 FLETPPAQSAAL 77 >gi|315037973|ref|YP_004031541.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|312276106|gb|ADQ58746.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] Length = 147 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 5/108 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R G++Q +L +G++ Q + YE Q +++ L + + Sbjct: 2 NRIRQVRSEKGITQAELANAIGMSRQGLAYYENNQREPKLETWQKLADYLGVSVPYLQGF 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 S ++ + S N F + + + +I+D + + + + Sbjct: 62 SDSLANGASRNSNGFGFFNFSEEANE-----AKINDQSLIDMLYMIYK 104 >gi|325697585|gb|EGD39470.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] Length = 205 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L E LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLAEQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGIEPVVQ 70 >gi|240139328|ref|YP_002963803.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240009300|gb|ACS40526.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 198 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G +IR+ R +S L GI+ + K E G + + I+ L P Sbjct: 15 PLEKALGYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSLASINAIASALNVP 74 Query: 70 ISFFF 74 I+ F Sbjct: 75 ITGLF 79 >gi|56419028|ref|YP_146346.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56378870|dbj|BAD74778.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 125 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 17/119 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R ++QE+LG+ + +T + YE G LQ +++ + Sbjct: 7 LGDRLRKLRQEKKLTQEELGKKINVTKVSISGYENGNRTPDTETLQKLADFFNVTTDYL- 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPD-GL---QLNRYFIQIDDVKVRQ----KIIELVRS 125 +++++ + + P+ GL +L + R+ KI E+++S Sbjct: 66 --LGRTDHPNPPDQDDIPEELKDPELGLFFKELAEA------PEERREQLLKIWEILKS 116 >gi|15615472|ref|NP_243775.1| hypothetical protein BH2909 [Bacillus halodurans C-125] gi|10175531|dbj|BAB06628.1| BH2909 [Bacillus halodurans C-125] Length = 189 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NK++ + +G+R++ R GM+ ++L + G++ + + E+G + S L I+ Sbjct: 2 NKEM---LSKRIGQRLKRIRSDRGMTLDQLAKKTGVSKPMLGQIERGESNPTVSTLWKIA 58 Query: 64 EVLESPISFFFDVSPT 79 L + F + Sbjct: 59 TGLHVSFTAFIEDEKP 74 >gi|83943125|ref|ZP_00955585.1| transcriptional regulator, putative [Sulfitobacter sp. EE-36] gi|83846133|gb|EAP84010.1| transcriptional regulator, putative [Sulfitobacter sp. EE-36] Length = 431 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++ G Q L + +GI+ + E R+G L +I+ L + Sbjct: 4 DALTGSRIRERRVMAGQKQADLAKRIGISASYLNLIEHNRRRIGGKLLLNIAAALGVEPT 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDG 100 + + E + +S P+ Sbjct: 64 ALTEGAEAALIATLREAADDAR-LSGPEA 91 >gi|289579057|ref|YP_003477684.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528770|gb|ADD03122.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 182 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+++ R G++ +++GE +G++ KYEK L I++ + + F Sbjct: 2 IGDRLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + E N +F+ + + +I D ++ LV ++ +S +KY Sbjct: 62 GRTNIREPQFVEEANIQSEFLKEFE-------WSKIGDP---SQMYFLVENLSTSIRKYN 111 Query: 135 T 135 Sbjct: 112 E 112 >gi|254465943|ref|ZP_05079354.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206686851|gb|EDZ47333.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 218 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R G++ L G++ + K E G + LQ ++ L PI Sbjct: 30 LEVAIGREVRSFRRQQGITVADLANLTGLSIGMLSKIENGNTSPSLTTLQLLANALSVPI 89 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + FF + ++ + Sbjct: 90 TSFFRRFEETREAVHTKAGEGAE 112 >gi|159184228|ref|NP_353276.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139556|gb|AAK86061.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 193 Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G+RI++ R G++ E+L G++ + + E+G AS L I L + Sbjct: 9 LERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARICAALGLSL 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 S FF + S + + + P+ + R I +V Sbjct: 69 SGFFAENEEAVSPLVKKRD--QQLWKDPETGYVRRA---ISPPRV 108 >gi|257887265|ref|ZP_05666918.1| predicted protein [Enterococcus faecium 1,141,733] gi|257823319|gb|EEV50251.1| predicted protein [Enterococcus faecium 1,141,733] Length = 130 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + G++++ R+ G+ +L G++ Q+ ++EKG + L+ +S L IS Sbjct: 1 MEFGEKLKKLRISRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSIS 60 Query: 72 FFFDVSPTVCSDISSEENN 90 +F + SP + I N Sbjct: 61 YFEENSPVNVNTIPEWANE 79 >gi|189439596|ref|YP_001954677.1| putative transcriptional regulator [Bifidobacterium longum DJO10A] gi|317481901|ref|ZP_07940928.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|189428031|gb|ACD98179.1| Hypothetical transcriptional regulator [Bifidobacterium longum DJO10A] gi|316916692|gb|EFV38087.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 161 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 73 FFDVSP 78 ++ Sbjct: 61 LMEMPD 66 >gi|315222273|ref|ZP_07864179.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188606|gb|EFU22315.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 290 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESP 69 + I + R++ +R+ LG+SQ++L E G+ Q Q+ + EKG G+ L +S+ + Sbjct: 1 MSILLATRLKSKRLELGLSQKELAE--GVCEQGQISRMEKGKYMPGSDLLYSLSKKMNVT 58 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVR 116 +++FFD S + + +++ +Y ++ D + R Sbjct: 59 MNYFFDDSVLDETSKLVQFKELVESFLVKREYDSLKYLYSLEIDKQHR 106 >gi|311111417|ref|ZP_07712814.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311111482|ref|ZP_07712879.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066571|gb|EFQ46911.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066636|gb|EFQ46976.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 112 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +SQ +L + L ++ Q + K+E G + L ++E + + Sbjct: 2 IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYLL 61 Query: 75 DVSPTVCSDISSEENNVM 92 T E + + Sbjct: 62 GSDKTSEPKSVDLEKDPV 79 >gi|261369061|ref|ZP_05981944.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568797|gb|EFB74332.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 90 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGKR++ R +G SQ K+ + LG T + +YE G + + ++ + + + Sbjct: 2 IEVGKRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F +D E + P+ +L R Sbjct: 62 IF-----ARTDKPQGETYHFKPKAAPEREELRR 89 >gi|257440458|ref|ZP_05616213.1| LexA repressor [Faecalibacterium prausnitzii A2-165] gi|257197080|gb|EEU95364.1| LexA repressor [Faecalibacterium prausnitzii A2-165] Length = 206 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +RI RR+ LG+SQE+L + +G + + K EKGVN + S+++ + LE+ ++ Sbjct: 4 LSRRILQRRLELGLSQEELAQRMGYRSKSSITKLEKGVNDIPQSKVEEFAAALETTPAWL 63 Query: 74 FDVSPTVCSDISSEE 88 + T E Sbjct: 64 MGLENTAFVPPGFEP 78 >gi|312875437|ref|ZP_07735441.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315653809|ref|ZP_07906725.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] gi|311089100|gb|EFQ47540.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315488505|gb|EFU78151.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] Length = 210 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 40/82 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ ++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 D + I + +V + Sbjct: 61 LLDKDNAIDLSIIKKPIDVAKY 82 >gi|282601309|ref|ZP_06257987.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569451|gb|EFB74986.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+R++ R +G SQ K+ + LG T + +YE G + + ++ + + + Sbjct: 2 IEVGRRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F +D E + P+ +L R Sbjct: 62 IF-----ARTDKPQGETYHFKPKAAPEREELRR 89 >gi|281492863|ref|YP_003354843.1| phage Cro/CI transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281376515|gb|ADA66001.1| Phage protein, transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 203 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +RI++ R G+SQ++L + LG+T Q V YEKG R+ + IS++L P + Sbjct: 2 ERIKIARQKKGISQKELADLLGLTQQAVSYYEKGS-RIPDEHILSVISDILNVPTEYL 58 >gi|331702633|ref|YP_004399592.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129976|gb|AEB74529.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 110 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R LG +Q++L E L ++ Q + K+E G RL +S++ + Sbjct: 1 MVLGQRIKEEREKLGWTQDRLAEELHVSRQAISKWEVGSAYPDIERLIQLSDLFGVSLDS 60 Query: 73 FFDVSP 78 Sbjct: 61 LIKGDE 66 >gi|307711152|ref|ZP_07647574.1| putative transcriptional regulator [Streptococcus mitis SK321] gi|307617114|gb|EFN96292.1| putative transcriptional regulator [Streptococcus mitis SK321] Length = 149 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 38/83 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ++L E +G+ ++ +Q +E G +++ + + +++ + + + Sbjct: 2 NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAKQLADYFGVSVGYLLNY 61 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + + ++ S + Sbjct: 62 TNSKKDPFDGYIPTPREYRSWQE 84 >gi|307319507|ref|ZP_07598934.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306894879|gb|EFN25638.1| putative phage repressor [Sinorhizobium meliloti AK83] Length = 263 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR RR +G++Q++L + I V ++E + ++ ++++L + Sbjct: 4 IGQRIRQRRKQIGITQQQLADAFDIKRVSVTQWEGDITAPDRDKIAKLADLLGCDPEWLL 63 Query: 75 --DVSPTVCSDISSEENNVMDFIST 97 P D+ +S+ Sbjct: 64 RGSGDPPRALDLGPGSRGSRAVVSS 88 >gi|257876621|ref|ZP_05656274.1| predicted protein [Enterococcus casseliflavus EC20] gi|257810787|gb|EEV39607.1| predicted protein [Enterococcus casseliflavus EC20] Length = 207 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + IR RR LGM+QE+L + L ++ + +E G N + L ++++ + + F Sbjct: 5 QMIRERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDELFYD 64 Query: 77 SPTVCSDISSE 87 + + + + Sbjct: 65 DIDLVNKFAED 75 >gi|237802182|ref|ZP_04590643.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025039|gb|EGI05095.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 160 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + G R+R R+ GMSQE + I + + E+G +Q ++E L Sbjct: 1 MKTSLRKRFGLRVRELRIASGMSQEAFADHASIARSYMSRIERGGANPSLDAIQVLAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 F++ S + E D Sbjct: 61 GVDAGALFEIVEPATSYDAVEVPYAED 87 >gi|228920891|ref|ZP_04084230.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838822|gb|EEM84124.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 126 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R + +SQ++L + LG+T Q+ +YE+G ++ I++ + + Sbjct: 7 LGDRIRYLRELNNLSQKRLSDALGLTNTQLSRYERGERNPEPETIKLIADYFDVTTDYL- 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++I+ + + + + L +F I D ++ Sbjct: 66 ---HGRTNNINYTNPDFKNILDDAE---LGLWFKDIKDASPEKR 103 >gi|221065568|ref|ZP_03541673.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220710591|gb|EED65959.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 108 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 4/77 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D G R++ R+ G+SQ+ LG G + ++ +YE G+++ ++ ++EVL+ Sbjct: 5 DEQWGARLKQARLAAGLSQKMLGIEAGIDAFVASTRINRYELGIHKPDLLTVRKLAEVLK 64 Query: 68 SPISFFFDVSPTVCSDI 84 P++FF+ + +++ Sbjct: 65 VPVAFFYADTDDEIAEL 81 >gi|324990276|gb|EGC22214.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 205 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCS 82 +V Sbjct: 61 LLKGIESVVQ 70 >gi|315150068|gb|EFT94084.1| helix-turn-helix protein [Enterococcus faecalis TX0012] Length = 183 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 6/112 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ + + + + V + R F D + R EL Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQYSEDHS----YRVFNYYSDNQERN--FEL 108 >gi|229168347|ref|ZP_04296072.1| Helix-turn-helix domain protein [Bacillus cereus AH621] gi|228615173|gb|EEK72273.1| Helix-turn-helix domain protein [Bacillus cereus AH621] Length = 277 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQINETEH 89 >gi|308235770|ref|ZP_07666507.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114942|ref|YP_003986163.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946436|gb|ADP39140.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 210 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDH 60 Query: 73 FFDVSPTV 80 D + Sbjct: 61 LLDKDNAI 68 >gi|229172472|ref|ZP_04300031.1| Transcriptional regulator, MerR [Bacillus cereus MM3] gi|228610943|gb|EEK68206.1| Transcriptional regulator, MerR [Bacillus cereus MM3] Length = 181 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L GIT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|222529019|ref|YP_002572901.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455866|gb|ACM60128.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 321 Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L E LGI + YE GV + LQ I+ + ++ Sbjct: 51 RLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIANYFNVSSDYLLGMT 110 Query: 78 PTVCSDISSEENNVM 92 P D + ++ Sbjct: 111 PIKKRDSLNSIEEII 125 >gi|332654058|ref|ZP_08419802.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517144|gb|EGJ46749.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 223 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + K IR R G++QE+L + L +T Q V +E G R LQ I++ L + Sbjct: 7 IAKHIRSLRKRAGLTQEELAQRLYVTRQTVSLWELGKTRPDVETLQAIADCLGVDL 62 >gi|83310829|ref|YP_421093.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945670|dbj|BAE50534.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 164 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++R R+ ++QE+L E + T + + E+G L I++ L++P++FF Sbjct: 51 QIGLKVRAARLKRSLTQEQLAERVDKTAESISNIERGHVTPPLDTLARIAQELDTPMTFF 110 Query: 74 FDV 76 F+ Sbjct: 111 FED 113 >gi|322830791|ref|YP_004210818.1| XRE family transcriptional regulator [Rahnella sp. Y9602] gi|321165992|gb|ADW71691.1| transcriptional regulator, XRE family [Rahnella sp. Y9602] Length = 188 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 1/95 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G +++ R G S + E G++ + + E+G + + L I+ L S F Sbjct: 7 HIGSQLKAVRSERGWSLSQTAEHTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSEF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + P S + F S G+++ F Sbjct: 67 LETPPAQ-SAALHRHGLLTTFNSDTSGMRVVPLFP 100 >gi|253755127|ref|YP_003028267.1| DNA-binding protein [Streptococcus suis BM407] gi|251817591|emb|CAZ55338.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 230 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ RR+ LG SQ +L + L I +E + S L+ ++ +L+ P ++F Sbjct: 4 GKRLKERRITLGYSQSELADKLHINRSSYFNWENEKTKPNQSNLKQLAILLDVPETYF 61 >gi|309807458|ref|ZP_07701419.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|308169278|gb|EFO71335.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] Length = 210 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 40/82 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ ++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 D + I + +V + Sbjct: 61 LLDKDNAIDLSIIKKPIDVAKY 82 >gi|256618071|ref|ZP_05474917.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256597598|gb|EEU16774.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|295114477|emb|CBL33114.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] Length = 167 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G++IR RM +SQ +L L ++ Q + +E G R L IS + P+ Sbjct: 1 MNTGEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEV 60 Query: 73 FFDVSPTVCSDISSE 87 F + +E Sbjct: 61 FLSEDISEIKKQHTE 75 >gi|257453722|ref|ZP_05619008.1| transcriptional regulator, XRE family [Enhydrobacter aerosaccus SK60] gi|257448905|gb|EEV23862.1| transcriptional regulator, XRE family [Enhydrobacter aerosaccus SK60] Length = 106 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R + R ++QE+LG +G + ++ +YEKG++ L I+E+L+ P +FF Sbjct: 10 RFKQARKAKKLTQEQLGIAIGLDEFVASTRINRYEKGIHLPDLQTLARIAEILDVPPAFF 69 Query: 74 F 74 F Sbjct: 70 F 70 >gi|238060409|ref|ZP_04605118.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882220|gb|EEP71048.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 409 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFF 73 VG+RI R MSQ+ L + LG + V K E+GV R+ S LQ I+ VL + F Sbjct: 6 VGRRIAYWRTRRRMSQQALADTLGKSKSWVDKVERGVRRLDKLSNLQEIAGVLRIDVQFL 65 Query: 74 FDVSPTVCSDISSEENNVMD 93 P ++E + D Sbjct: 66 IGTEPASSGSGAAEGGPLSD 85 >gi|332798913|ref|YP_004460412.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696648|gb|AEE91105.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 184 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + N+GK+++L R ++ +L E GIT + + E G + L+ IS L P+ Sbjct: 3 NANIGKKLQLYREQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVPMF 62 Query: 72 FFFDVSPTV 80 FF Sbjct: 63 KFFITDDDT 71 >gi|257455479|ref|ZP_05620712.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257447104|gb|EEV22114.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 115 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 16/122 (13%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +D VG+ + R+ M+Q ++ E LGI+ + + E+G + +L +++ Sbjct: 2 NSKYDIDKVVGQSLARHRLACNMTQAQVAEALGISVDAISRMERGTISLNLPKLMQFAKL 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +S F S + + +M+ + D+ R +I+++ S Sbjct: 62 FKCKLSDFVIESSPLIDEQLQYLAKIMEPL----------------DINQRNHLIKIIES 105 Query: 126 IV 127 +V Sbjct: 106 MV 107 >gi|253987942|ref|YP_003039298.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779392|emb|CAQ82553.1| similar to transcription regulator and to restriction enzyme contro elements [Photorhabdus asymbiotica] Length = 78 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN + G+R+R R GMSQE + GI + E+G+ + I+ Sbjct: 2 KKPNAIKSLFGQRVRHLRQSSGMSQEAFADKCGIDRTYISGIERGIRNPTLEVINIIASG 61 Query: 66 LESPISFFFDVSPTVCS 82 L+ ++ FD S + + Sbjct: 62 LQIELTDLFDFSTELKN 78 >gi|116628413|ref|YP_821032.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116101690|gb|ABJ66836.1| transcriptional regulator, XRE family [Streptococcus thermophilus LMD-9] Length = 289 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RI+ RR L MSQ++L E GI Q Q+ + E G G+ L +S L + +FFD Sbjct: 7 SRIKNRRKELKMSQKELAE--GICKQGQISRLENGEYIPGSVLLHELSRKLNVSMDYFFD 64 Query: 76 VSPTVCSD 83 + S+ Sbjct: 65 EQISSGSN 72 >gi|86355908|ref|YP_467800.1| LacI family transcription regulator [Rhizobium etli CFN 42] gi|86280010|gb|ABC89073.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CFN 42] Length = 189 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +G RIR R+ G++ ++L E G++ + + E+ AS L + L Sbjct: 1 MEQELEQAIGIRIRTLRLEKGLTLDELAEASGVSRAMISRIERAEASPTASLLARVCAAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +S FF S ++ + P+ L R Sbjct: 61 GLSLSAFFAEEGQQASPLARRQE--QQVWRDPETGYLRRA 98 >gi|260460388|ref|ZP_05808640.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034033|gb|EEW35292.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 202 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 38/80 (47%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K + D+ VG+R+R R+ G+S +L G++ + + E+G++ + + ++ Sbjct: 9 EKPKDDADVRVGRRVRALRLERGLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAA 68 Query: 65 VLESPISFFFDVSPTVCSDI 84 L+ S +D+ Sbjct: 69 ALDIEPSALIADGNDAVNDL 88 >gi|224543830|ref|ZP_03684369.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] gi|224523249|gb|EEF92354.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 5 IGSKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVM 92 + + D E NV+ Sbjct: 65 KGEEKMKNYYDYLEESTNVV 84 >gi|295094523|emb|CBK83614.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 97 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 3/97 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R M+Q++L L + FQ + +E S + I+E + Sbjct: 2 IGEQLRTLRTANKMTQKELAGELSVAFQTISNWENNSIDPSVSMILRIAEYFNCSTDYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + I + + L L + F +++ Sbjct: 62 KGDDSSAKYIDTTQLTEHQH---AQLLGLAKEFSKLN 95 >gi|251794968|ref|YP_003009699.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542594|gb|ACS99612.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 272 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 14/110 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I + R G +QE+L LGI+FQ V K+E + S L + LE I Sbjct: 7 RSIAIYRKERGFTQEELATKLGISFQAVSKWENALTMPDLSLLPELCRTLEVSIDKLLGY 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + EE + + + + E+++++ Sbjct: 67 VSQDKTITIYEEEYKTE------------NYYWGTEPN--SGVYEVLKAM 102 >gi|227544810|ref|ZP_03974859.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908944|ref|ZP_07126407.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227185211|gb|EEI65282.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894351|gb|EFK87709.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 108 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISF 72 N+G IR RR LG++QE+L G++ + + E G N V A L I+EVL++ + Sbjct: 3 NLGANIRARRHELGITQEQLSNNTGLSINYISRLEVGTANNVSAKTLLKIAEVLKTSMDK 62 Query: 73 FFDVSPTVCS 82 + S + Sbjct: 63 LVNGSSDTAN 72 >gi|116629237|ref|YP_814409.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116629297|ref|YP_814469.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116094819|gb|ABJ59971.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|116094879|gb|ABJ60031.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] Length = 115 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +SQ +L + L ++ Q + K+E G + L ++E + + Sbjct: 5 IGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYLL 64 Query: 75 DVSPTVCSDISSEENNVM 92 T E + + Sbjct: 65 GSDKTSEPKSVDLEKDPV 82 >gi|160878226|ref|YP_001557194.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426892|gb|ABX40455.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 273 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQE+L + L ++ Q V K+E S+L +SE+ E + + Sbjct: 6 KLIELRRERGLSQEQLADQLDVSRQSVSKWESDQTMPELSKLITLSEIFEVSLDYLMRDY 65 Query: 78 PTVCSDISSEENNVMD 93 S +++N +D Sbjct: 66 IMDRSGTREKKDNTVD 81 >gi|197103371|ref|YP_002128749.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] gi|196480647|gb|ACG80174.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] Length = 120 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG+ IR+ R +G++Q L E +G+T Q + E+G L+ ++ L++P+ Sbjct: 17 KSVGRAIRMHRERVGLTQAALAEAVGLTEQYIGVVERGARAPSFRTLEALARTLKTPVRD 76 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF P + ++V+ ++ + R Sbjct: 77 FF-PHPLAQEEADEALSDVIGLLAPLTAEERARA 109 >gi|312865414|ref|ZP_07725641.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098932|gb|EFQ57149.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 193 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 43/82 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R+ G++QE + + L +T Q V ++E+ N LQ +S++ E +++ Sbjct: 1 MKIGERLRQARINAGLTQEDVSKELFVTRQTVSRWEQEKNLPNLYVLQDLSKLYEVEVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 F ++ S+ N F Sbjct: 61 FLTKEVENQTEKKSQINFYALF 82 >gi|189009165|ref|YP_001928047.1| putative transcriptional regulator [Klebsiella pneumoniae] gi|171850706|gb|ACB55445.1| putative transcriptional regulator [Klebsiella pneumoniae] Length = 119 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 6/114 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R +G+SQEKL E +GI T ++ YE G S +Q I++VL P + Sbjct: 4 KRLKEARKAVGLSQEKLSELIGIEGVSTRSRLSSYEIGRTEPPFSLVQKIADVLGYPEYY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 F+ + + N + + + Q+DD R+ +++L + Sbjct: 64 FYTANDVTAKILLEMHKNGKQPTNASIADEARKMAEQLDDA--RKLVVQLTECL 115 >gi|318605629|emb|CBY27127.1| transcriptional regulator yidN, Cro/CI family [Yersinia enterocolitica subsp. palearctica Y11] Length = 188 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +++ R G S + E G++ + + E+G + + L I+ L S Sbjct: 6 RHIGNQLKNVRRERGWSLSQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQ 65 Query: 73 FFDVSPTVCSDI 84 F + P + + Sbjct: 66 FLETPPAQSAAL 77 >gi|227500718|ref|ZP_03930767.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227217176|gb|EEI82525.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 143 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ ISE L+ IS D Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALID 63 Query: 76 VSPTVCSDISS 86 P +I Sbjct: 64 HEPNSIFEIMH 74 >gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] Length = 169 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L L + Q + K+E G++ + L ISE LE+P+S Sbjct: 4 ENIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSVPDSDMLISISEALETPVSVLL-G 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 P E +++ + + L R+KI+ Sbjct: 63 EPVA----EPEADDLKAVCEKLEIINLQLA----QRKAARRKIL 98 >gi|160885068|ref|ZP_02066071.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483] gi|298483202|ref|ZP_07001382.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] gi|156109418|gb|EDO11163.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483] gi|295084669|emb|CBK66192.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] gi|298270719|gb|EFI12300.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] Length = 134 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K N + ++G++I R + GM+Q +LG+ LGIT Q V K E + RL Sbjct: 1 METEKYTNTI--HLGRKIERVRRLRGMTQAELGDLLGITKQAVSKIE-QTEKFDDERLGE 57 Query: 62 ISEVLESPIS 71 I+ L + Sbjct: 58 IASALGVTVD 67 >gi|163851665|ref|YP_001639708.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|218530471|ref|YP_002421287.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240138832|ref|YP_002963307.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254561435|ref|YP_003068530.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|163663270|gb|ABY30637.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|218522774|gb|ACK83359.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] gi|240008804|gb|ACS40030.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254268713|emb|CAX24672.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 201 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G ++RL R +S LG GI+ + K E G + + I+ L P Sbjct: 15 PLEKALGHQVRLLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIASALNVP 74 Query: 70 ISFFF 74 I+ F Sbjct: 75 ITALF 79 >gi|76798009|ref|ZP_00780267.1| phage repressor protein [Streptococcus agalactiae 18RS21] gi|76586632|gb|EAO63132.1| phage repressor protein [Streptococcus agalactiae 18RS21] gi|323127145|gb|ADX24442.1| repressor protein, putative [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 230 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ RR+ LG SQ +L + L I +E + S L+ ++ +L+ P ++F Sbjct: 4 GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKTKPNQSNLKQLAILLDVPETYF 61 >gi|325970144|ref|YP_004246335.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025382|gb|ADY12141.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 112 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFF 73 +G+RIR R+ GM+Q L +G++ E G ++ L I++ L++ I S Sbjct: 8 LGQRIREARIKTGMTQATLSGIIGLSPSHYSHIESGKAKINLPTLVAIAQALDTTIDSLL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +D P + + ++++ + + L + IQ+ V R + Sbjct: 68 YDSIPVLIDSYDKDFKDLLEDCTRDEKETLLQNTIQMKTVMRRNR 112 >gi|146302466|ref|YP_001197057.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156884|gb|ABQ07738.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 132 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 7/129 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ I R + GM Q L + +G + Q + E V +L I++ L + Sbjct: 8 KHIGRNISRIRELRGMKQGALADAIGTSQQTISSIETSET-VDFDKLVQIAKALGVTVEA 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + NN D + Q+N F + K++EL +V +EK Sbjct: 67 ---IENFTEESVFNFFNNFYDNSANHG--QVNGPFNSCTFNAL-DKVVELYERLVQAEKD 120 Query: 133 YRTIEEECM 141 E+ M Sbjct: 121 KVEYLEKLM 129 >gi|317132933|ref|YP_004092247.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] gi|315470912|gb|ADU27516.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] Length = 262 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +R++ R G+SQEKL E G++ Q V K+E G ++ +L +S++ + Sbjct: 1 MEFSERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQPDMDKLVLLSKLFGISLD 59 >gi|284007818|emb|CBA73695.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 12/131 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ RR L +SQ L LGI + ++E+ + L +++ L S+ Sbjct: 4 KTLGERIKARRQELKLSQRALASILGIAHVSISQWERNESTPKGENLMALAKTLHCEPSW 63 Query: 73 FFDV---SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 F+ P S++ + D T L F ++ D + ELV S+ Sbjct: 64 LFEEQGNLPISASELPEAPIKLSDLQKT-----LLDLFDELPDSEQE----ELVESLREK 114 Query: 130 EKKYRTIEEEC 140 ++ Y + E+ Sbjct: 115 KQYYDQLFEQL 125 >gi|22537417|ref|NP_688268.1| repressor protein [Streptococcus agalactiae 2603V/R] gi|77406937|ref|ZP_00783958.1| repressor protein, putative [Streptococcus agalactiae H36B] gi|22534293|gb|AAN00141.1|AE014250_4 repressor protein, putative [Streptococcus agalactiae 2603V/R] gi|77174457|gb|EAO77305.1| repressor protein, putative [Streptococcus agalactiae H36B] Length = 230 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ RR+ LG SQ +L + L I +E + S L+ ++ +L+ P ++F Sbjct: 4 GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKTKPNQSNLKQLAILLDVPETYF 61 >gi|260596321|ref|YP_003208892.1| hypothetical protein CTU_05290 [Cronobacter turicensis z3032] gi|260215498|emb|CBA27640.1| hypothetical protein CTU_05290 [Cronobacter turicensis z3032] Length = 103 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 8/86 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGA 56 M P KR++ R G+SQ+KLG G + ++ +YEKGV++ Sbjct: 1 MSETTNTPT----VFCKRLKTAREAKGLSQKKLGILAGIDEFVASARINRYEKGVHQASI 56 Query: 57 SRLQHISEVLESPISFFFDVSPTVCS 82 + +++ L P+++F+ + Sbjct: 57 EIARKLADALAVPLAYFYTEDDELAE 82 >gi|255316610|ref|ZP_05358193.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 116 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R G SQE L + G+ + + E+G ++ + I+ LE P+ F Sbjct: 10 IGKRIRNYRKRAGYSQEALAKKAGLFHAYLGQIERGESKASLRSIFKIANALEMPLEILF 69 Query: 75 DVSPTVCSD---ISSEENNVMDFISTPD 99 + D +SSE ++D +++ + Sbjct: 70 ENIIQNEKDPETLSSEAYELIDSLTSKE 97 >gi|149920973|ref|ZP_01909434.1| transcriptional regulator, XRE family with cupin sensor [Plesiocystis pacifica SIR-1] gi|149818245|gb|EDM77700.1| transcriptional regulator, XRE family with cupin sensor [Plesiocystis pacifica SIR-1] Length = 199 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++GK IR RR LG+S + L + G++ + + E+ I+ L Sbjct: 2 HDPSSSIGKNIRSRRQALGLSLDALAQASGVSSTMLSEVERARKNPTVKLAYQIARALGC 61 Query: 69 PISFFFDVSPTVC 81 ++ + SP V Sbjct: 62 SLTDLLEDSPAVE 74 >gi|319440538|ref|ZP_07989694.1| putative DNA-binding protein [Corynebacterium variabile DSM 44702] Length = 221 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ +G R+R R GMS L E G++ + K E + + H++ L+ Sbjct: 22 HSIEVGLGHRVRALRTSRGMSVAALSERAGLSKAMLSKIENAQTSCSLTSVAHLAAALDV 81 Query: 69 PISFFFDVSP 78 P++ F S Sbjct: 82 PVATLFQDSS 91 >gi|257792132|ref|YP_003182738.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476029|gb|ACV56349.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 247 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +++ + +R+ R G SQE+L E LG++ Q V K+E+ + L Sbjct: 1 MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLI 60 Query: 61 HISEVLESP 69 ++++ Sbjct: 61 ALAKLYGVS 69 >gi|307153159|ref|YP_003888543.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] gi|306983387|gb|ADN15268.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] Length = 377 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 12/118 (10%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + I+ R LG+SQ+ L + G++ Q + E G A+ +++ L + Sbjct: 4 DKELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVE 63 Query: 72 FFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKIIE 121 F + V +E + L L + I + R +II Sbjct: 64 DLFWLEDDDAVIEAQPTESVPMGQPFR----LSLAQVGGQLVAHPLIQEDAFRTEIIA 117 >gi|297588232|ref|ZP_06946875.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573605|gb|EFH92326.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 179 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 43/89 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ LG++QE+L E +T + + E+ + L + L + ++ Sbjct: 1 MEIGEKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNDLLNALGTDMAT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF P+V + ++ + +S + Sbjct: 61 FFMDKPSVKEIFTKDDYQSSEDLSMNSTI 89 >gi|257468157|ref|ZP_05632253.1| SOS-response transcriptional repressor [Fusobacterium ulcerans ATCC 49185] gi|317062443|ref|ZP_07926928.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688119|gb|EFS24954.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 205 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G++I L R M+Q++L E L I+ Q + YE + L +I+++ PI F Sbjct: 3 NLGQKIMLLRKKENMTQDELAEKLNISKQSILNYETEKRLIPIDVLSNIAKLFNFPIENF 62 Query: 74 F 74 F Sbjct: 63 F 63 >gi|110680047|ref|YP_683054.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109456163|gb|ABG32368.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 429 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR + G+ Q L LGI+ + E R+G L I+ VL S + Sbjct: 8 GSRIRERRSVAGLKQADLARALGISPSYLNLIEHNRRRIGGKLLLDIARVLGVEPSMLTE 67 Query: 76 VSPTV 80 + Sbjct: 68 GAEAA 72 >gi|238790799|ref|ZP_04634557.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] gi|238721114|gb|EEQ12796.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] Length = 234 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR+RR+ L ++Q +L + +G++ V K+E G+ + L +++VL + Sbjct: 22 RIRIRRLQLDLTQVQLAKAIGVSRVSVTKWESGITKPDGENLHRLAQVLSCTPEWL 77 >gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + +GKR++++R+ +SQ +L + LG+T + E G + L + ++ Sbjct: 4 NMTEEYNRLIGKRVKMQRISAKVSQTELAKELGVTQTHLSNIENGRAGLTIPNLIKLHQI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 LE PIS FF V + E +N D I+ + ++L R + D Sbjct: 64 LECPISSFF-----VDIEWEKEADNSSD-ITLENVMELARLLKKARD 104 >gi|323487309|ref|ZP_08092609.1| hypothetical protein HMPREF9474_04360 [Clostridium symbiosum WAL-14163] gi|323694251|ref|ZP_08108427.1| hypothetical protein HMPREF9475_03291 [Clostridium symbiosum WAL-14673] gi|323399354|gb|EGA91752.1| hypothetical protein HMPREF9474_04360 [Clostridium symbiosum WAL-14163] gi|323501724|gb|EGB17610.1| hypothetical protein HMPREF9475_03291 [Clostridium symbiosum WAL-14673] Length = 126 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 7/93 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 +R++ R+ +G +Q+++ + +GIT YE G + ++++ ++++L++ F + Sbjct: 5 ERLKEARISVGYTQQQVADAMGITNSTYCGYETGKRQPDVAKIKQLAKILKTSGDFLLET 64 Query: 76 -----VSPTVCSDIS-SEENNVMDFISTPDGLQ 102 S +DIS E+ V D + + L Sbjct: 65 GFVPVGSEEDKTDISCCHEDYVADIFANFELLD 97 >gi|292557937|gb|ADE30938.1| Transcriptional regulator, Cro/CI family [Streptococcus suis GZ1] Length = 190 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESP 69 + + G++++ R LGMSQ++L +G+T + + YE +R G R + ++E L Sbjct: 53 ITMTFGEKVKAERTKLGMSQDELAAKIGVTRRIIGSYENDKSRPRGMERYKKLAESLNVN 112 Query: 70 ISFFFDVSPTVCSDISSE 87 +++ +D+ + Sbjct: 113 VNYLLSEDDAFIADVEDK 130 >gi|238023271|ref|ZP_04603697.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147] gi|237865391|gb|EEP66531.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147] Length = 214 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ +R L ++Q L + + G++ + ++E + + A L +S++ + + Sbjct: 6 IGQRIKQKRKELHLTQADLAKKVQGVSHAAISQWETDITKPNAENLYDLSQIFKCDFVWL 65 Query: 74 FDVSPT 79 Sbjct: 66 LRGEGE 71 >gi|325838540|ref|ZP_08166562.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490835|gb|EGC93137.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 110 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 40/82 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE+L E L ++ Q V K+E LQ I+++ + Sbjct: 3 MTLGEKIKKYRQARGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + + S + EE ++ + Sbjct: 63 LLAMDEKIGSIVLKEEIDIEKY 84 >gi|268593023|ref|ZP_06127244.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311286|gb|EFE51739.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 132 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG + R G+S +LG+ LG++ QQ+ +YE GV R+ S L L++ + FF Sbjct: 24 VGNELAYMRKNKGISGAELGKLLGMSQQQISRYENGVTRLDLSTLLSFLLRLDTTLDDFF 83 >gi|261207839|ref|ZP_05922524.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566390|ref|ZP_06446818.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|83940994|gb|ABC48899.1| hypothetical protein [Enterococcus faecium] gi|260078222|gb|EEW65928.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161828|gb|EFD09700.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 122 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI++ R+ +QE + + +G++ Q V E G + V L I+ +L + Sbjct: 8 IGKRIKIARIKKNFTQEAVADRIGVSPQHVSNIETGNSSVSLPTLVAIANMLSVSVDELL 67 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D T E ++ + + + L Sbjct: 68 CDTVLTSKPIFEREAKDIFEDCNEYEVRVLV 98 >gi|237718064|ref|ZP_04548545.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|293370031|ref|ZP_06616598.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|299147755|ref|ZP_07040818.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|229452705|gb|EEO58496.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292634949|gb|EFF53471.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|298513938|gb|EFI37824.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 134 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K N + ++G++I R + GM+Q +LG+ LGIT Q V K E + RL Sbjct: 1 METEKYTNTI--HLGRKIERVRRLRGMTQAELGDLLGITKQAVSKIE-QTEKFDDERLGE 57 Query: 62 ISEVLESPIS 71 I+ L + Sbjct: 58 IASALGVTVD 67 >gi|303241397|ref|ZP_07327900.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302591006|gb|EFL60751.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 128 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 8/93 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G ++++ R+ ++Q L + L ++ V +YE G + L IS I + Sbjct: 2 VNFGDKLKMLRLEKNLTQNGLAKHLNVSKANVSRYELGTRQPNFDTLISISAFFNVSIDW 61 Query: 73 F--------FDVSPTVCSDISSEENNVMDFIST 97 F + + +++F+ T Sbjct: 62 LLGRSTIRNFSSVNDKPRNFEESDLEILEFLHT 94 >gi|319936892|ref|ZP_08011303.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] gi|319807991|gb|EFW04566.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] Length = 375 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R ++QE+L E L ++ Q + ++E N L ++ + E + Sbjct: 1 MTLGKRIQYYRKRKQLTQEELAEKLMVSRQAISRWESDNNEPDVKTLLILANIFEITVDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 + + + EN D I Sbjct: 61 LVRENEVNIDNQNIIENGSEDII 83 >gi|307266068|ref|ZP_07547614.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918937|gb|EFN49165.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 182 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 7/99 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+++ R G++ +++GE +G++ KYEK L I++ + + F Sbjct: 2 IGERLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + N +F+ + + +I D Sbjct: 62 GRTNIREPQFVEKANIQSEFLKEFE-------WSKIGDP 93 >gi|295702409|ref|YP_003595484.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294800068|gb|ADF37134.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 180 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKE 60 Query: 73 FFDVSPTVCSDISSEENN 90 FF++ V + EE+ Sbjct: 61 FFEIDTHVQKVVYREEDY 78 >gi|229545190|ref|ZP_04433915.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Enterococcus faecalis TX1322] gi|229309735|gb|EEN75722.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Enterococcus faecalis TX1322] Length = 390 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R++ RM GM+ E+L E +G++ Q + KYE+ ++ L + + L P FF+ Sbjct: 11 GQRLKEARMYRGMTLEELKEKIGVSKQMISKYEQNISAPTPEILFSLLQALRFPKEFFY 69 >gi|154482431|ref|ZP_02024879.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] gi|149736708|gb|EDM52594.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] Length = 293 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 31/55 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++I+ R G+SQEK+ E +G++ Q + K+E G + L I+++ + + Sbjct: 5 EQIKHYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIADLFQISVD 59 >gi|228920539|ref|ZP_04083884.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839169|gb|EEM84465.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 181 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAIMTIPPN 112 >gi|254515458|ref|ZP_05127518.1| conserved domain protein [gamma proteobacterium NOR5-3] gi|219675180|gb|EED31546.1| conserved domain protein [gamma proteobacterium NOR5-3] Length = 394 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V VG+R+ R G+S + +G+ + +YE G S + ++E L P Sbjct: 4 VSSFVGERLTQARKARGVSAGDFADMVGLDRVTISRYETGKMDPKPSTIYKMAEALNFPT 63 Query: 71 SFF 73 +F Sbjct: 64 GYF 66 >gi|323498569|ref|ZP_08103562.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323316458|gb|EGA69476.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 103 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 8/98 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R+R R G++QE+LG LG+ ++ +YE G + + ++ I++VL++P+++ Sbjct: 7 RRLRHIRKKQGITQEELGYKLGMEPAGASARISQYETGKHAPDYATVKRIADVLQAPVAY 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQ 109 F+ + + +T + L + Sbjct: 67 FYCEDDLLAEIVVQAARYSS---ATKLEILDFVETYCA 101 >gi|254975392|ref|ZP_05271864.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092781|ref|ZP_05322259.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100891|ref|ZP_05329868.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306781|ref|ZP_05350952.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314521|ref|ZP_05356104.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517196|ref|ZP_05384872.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650302|ref|ZP_05397204.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655775|ref|ZP_05401184.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|306520271|ref|ZP_07406618.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 92 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +I++ R LG++QE+LG +G + Q + E G N IS + PI F F Sbjct: 8 NKIKILREKLGLTQEQLGRLVGTSRQAINAIETGKNEPSIWLAYDISRIFNEPIESVFLF 67 Query: 75 DVSP 78 + S Sbjct: 68 EESE 71 >gi|29347770|ref|NP_811273.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29339671|gb|AAO77467.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 136 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++G++I R + GM+Q LGE LG+T Q + K E ++ +L+ ++ L Sbjct: 11 HLGRKIERIRRLRGMTQTDLGELLGVTKQAISKME-QAEKIDDEKLKQVATALGV 64 >gi|317057326|ref|YP_004105793.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449595|gb|ADU23159.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 117 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR RR+ LG+SQE+L E GIT V E+ ++ + IS VLE + + Sbjct: 13 VGERIRSRRVKLGLSQEQLAELCGITPSYVGHIERASRQLSLNTAISISTVLEISLDYLL 72 Query: 75 DVSPTVCSDISSEENNVMDFI-STPD 99 D+ E+ + +P+ Sbjct: 73 LDVKNENGDVGVLESISAELKNHSPE 98 >gi|299536255|ref|ZP_07049568.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728241|gb|EFI68803.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 388 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ +S +L E L +T Q V KYE G + + ++++L P FF+ Sbjct: 7 GQRLKEARLYNKLSITELAEKLNVTKQMVSKYESGKSDPSFEKSLLLTDILGYPREFFYS 66 Query: 76 VSPTVCSDISS 86 ++ + Sbjct: 67 EETFTINNEGT 77 >gi|160946089|ref|ZP_02093303.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270] gi|158447821|gb|EDP24816.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270] Length = 207 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q +L + LG+ V +E+ N + ++E+ + P+S+FFD + + + Sbjct: 1 MTQAQLAKKLGVAPTTVSSWERNDNNPLMDNITLMAEIFDVPVSYFFDKKDGIIVNEPAI 60 Query: 88 ENNVMDFISTP 98 E +V + TP Sbjct: 61 EYSVSPVLKTP 71 >gi|118594424|ref|ZP_01551771.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] gi|118440202|gb|EAV46829.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] Length = 516 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R + G++ E L ++ + + E+G + S LQ I+EVL + FF Sbjct: 5 VGNNIRELRTLHGLTLNAFAEKLALSPSNLSRIERGSLNIKVSLLQKIAEVLGTSPHVFF 64 Query: 75 DVSPTVCSDISSEENNVMDF 94 + I S ++ F Sbjct: 65 NKYGQNTGPIKSIKDFTHQF 84 >gi|300854388|ref|YP_003779372.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434503|gb|ADK14270.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 181 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +IR R +S E+L E ++ + + E+ + + L I++ L +++ Sbjct: 1 MKFGFKIRKLRQEKSISIEQLAEMAKLSTGLISQVERNITGPSVTTLWKIAKALNVSMNY 60 Query: 73 FFDVSPTVCSD 83 FFD D Sbjct: 61 FFDEDEYEEKD 71 >gi|283782998|ref|YP_003373752.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|283441145|gb|ADB13611.1| DNA-binding protein [Gardnerella vaginalis 409-05] Length = 210 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 35/68 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDH 60 Query: 73 FFDVSPTV 80 D + Sbjct: 61 LLDKDNAI 68 >gi|225573403|ref|ZP_03782158.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM 10507] gi|225039213|gb|EEG49459.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM 10507] Length = 75 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ ++ G +R R G SQE+ E I+ + E+G + + + I++ L Sbjct: 4 PDKINYYFGNNLRKFREAKGCSQEEFAEICKISRAYYGRIERGEHSITIEKCALIAQALG 63 Query: 68 SPISFFFDVSPT 79 IS F P Sbjct: 64 IHISVLFTDLPD 75 >gi|222083000|ref|YP_002542365.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727679|gb|ACM30768.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 205 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+RL R +LGM+ + L + + K E G L + EVL + I + F Sbjct: 24 LGTRLRLARQMLGMTLKALAVAADCSESLLSKIENGKASPSLPMLHRLVEVLGTNIGWMF 83 Query: 75 DVSPTVCS---DISSEENNVMDFISTPDGLQLNR 105 + + + +D + +G+ L R Sbjct: 84 EEADGEEGIVFRAGTRPLIGLDPLRRGEGISLER 117 >gi|218780466|ref|YP_002431784.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761850|gb|ACL04316.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R+ ++Q +L E +G++ + + + E+GV L ++E L S + FF Sbjct: 8 IGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTFPSVKTLARVAEALGSSLKQFF 67 Query: 75 DVSPTVCSDIS 85 D Sbjct: 68 DFDEDEGQGDG 78 >gi|149021903|ref|ZP_01835890.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] gi|147929941|gb|EDK80929.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] Length = 287 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + + Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRN-YENLEYIYRIE 98 >gi|325693715|gb|EGD35634.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332364198|gb|EGJ41974.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 205 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R + G+SQE L E LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKVRGISQEGLAEKLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGIEPVVQ 70 >gi|314937221|ref|ZP_07844566.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313654654|gb|EFS18401.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +I+ R MSQEKL E LG++ + +E+ V+ + I+++ ++ Sbjct: 5 IGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLN 61 >gi|257784356|ref|YP_003179573.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257472863|gb|ACV50982.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 210 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R + ++Q +L E +G T Q VQ+YE + ++ +SE+L +++ +S Sbjct: 4 QIAEARKLRNITQAELAEKMGTTQQTVQRYETNQVNIRMDKMIEMSEILNVSLAYLLGMS 63 Query: 78 PTVCSDISSEENNV 91 + S+ V Sbjct: 64 SSPEISEVSDMAPV 77 >gi|14141827|ref|NP_115293.1| hypothetical protein SAVP004 [Staphylococcus aureus subsp. aureus Mu50] gi|228475859|ref|ZP_04060571.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|14020888|dbj|BAB47512.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|228270091|gb|EEK11556.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +I+ R MSQEKL E LG++ + +E+ V+ + I+++ ++ Sbjct: 5 IGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLN 61 >gi|317403702|gb|EFV84189.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 189 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +VG ++ R G+SQ L E GI+ + + E G + + S L +++ LE Sbjct: 17 HVGANLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSNISLSSLDKLAQALEV 71 >gi|183597291|ref|ZP_02958784.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] gi|188023308|gb|EDU61348.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] Length = 185 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I +G+++RL R +S +L GI+ + K E G + L+ I+ L P+ Sbjct: 5 INIKIGQKVRLLRQARNLSLNELARLSGISKAALSKLESGDSNPRVDTLEAIAIALRFPL 64 Query: 71 SFFF 74 S F Sbjct: 65 SDLF 68 >gi|218779224|ref|YP_002430542.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760608|gb|ACL03074.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 433 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G RI+ R+ G+SQ ++ + +G+T + + E L ++E+L + Sbjct: 252 RDLGTRIKQLRVKKGLSQVQMAKMVGVTASTISQVENNSIYPSIPGLLKMAEILNVSPGY 311 Query: 73 FFDVS 77 F Sbjct: 312 LFSSD 316 >gi|255524707|ref|ZP_05391659.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185668|ref|ZP_06854077.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] gi|255511601|gb|EET87889.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049796|gb|EFG89221.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] Length = 120 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ R SQE+L E LG+T Q + K+E + + +SE+ + Sbjct: 3 ISERLQKLRKDERYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDYLL 62 Query: 75 DVSPTVCSDISSEENN 90 + I + Sbjct: 63 KGEEQISKPIEIDSKE 78 >gi|227486486|ref|ZP_03916802.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235534|gb|EEI85549.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 77 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R LG+SQ +LG+ +GI+ + K E G I+ L I FD+ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCIYQIFDL 62 Query: 77 SPT 79 T Sbjct: 63 DGT 65 >gi|58336583|ref|YP_193168.1| transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227903134|ref|ZP_04020939.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] gi|58253900|gb|AAV42137.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227869120|gb|EEJ76541.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] Length = 321 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 14/120 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ +SE+ + Sbjct: 1 MKLGQKITQLRKKSHLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDY 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + +P+ + E + + IDD ++ + +E+ + E Sbjct: 61 LLKNGTPSFELPGKTTEEKQIKKL------------PSIDDQQI-TQYLEVAKKTAHFES 107 >gi|302671595|ref|YP_003831555.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396068|gb|ADL34973.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 370 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--F 74 + I+ R + ++QE+L E G+T V K+E G N L +++ + + Sbjct: 7 ENIKKYRKSMNLTQEELAEAFGVTVGAVSKWESGANVPDILTLMQLADFFSISVDVLLGY 66 Query: 75 DVSPTVCSDISS------EENNVMDFISTPDGLQLNRY 106 +S DIS E+ + I+ + L RY Sbjct: 67 SMSSKNIKDISDRLDALLHEDKYDEAIAEAEK-ALARY 103 >gi|296129256|ref|YP_003636506.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296021071|gb|ADG74307.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 75 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V RIR R G M+Q +L LG+T Q V E+G I+ L P+ Sbjct: 8 VTNRIRALRTERGDMTQAELARHLGVTRQTVIAIEQGRYSPSLETAFQIARALGVPLDEV 67 Query: 74 FDVSPTV 80 FD Sbjct: 68 FDYPDDA 74 >gi|291287070|ref|YP_003503886.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884230|gb|ADD67930.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 196 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G++ + + G + + + E + + L I++VL +++ Sbjct: 6 VKIGERVRKIRNERGLTLQDVANFTGFSKALISQIENNIVMPPINTLSKIAKVLNVKMTY 65 Query: 73 FFDVS 77 FF+ Sbjct: 66 FFEEE 70 >gi|218510037|ref|ZP_03507915.1| hypothetical protein RetlB5_22605 [Rhizobium etli Brasil 5] Length = 167 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVS 77 ++ R G+S+ + LG++ +YE+ +++ +R+ H+ E+L PI F+ + Sbjct: 50 LKKTREAQGLSRADVAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFMPIDMIFEAA 109 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 P + S E + L L R ++ + R I L R I ++ R I Sbjct: 110 PHLWGRTSEEAEDC---------LTLARILRRLPNGTTRDLIRLLQRMIPDDDESDRDIS 160 Query: 138 E 138 + Sbjct: 161 D 161 >gi|154484069|ref|ZP_02026517.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] gi|149735111|gb|EDM50997.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] Length = 177 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R++ G++QE+L + +T + + E+ + L I + L + + Sbjct: 1 MDIGKKIKELRILKGLTQEELADRAELTKGFISQVERNHTSPSIATLVDILQCLGTDLKN 60 Query: 73 FFDVSPTVCSDISSEE 88 FF+ S E+ Sbjct: 61 FFEDDEDNQIVFSKED 76 >gi|229083904|ref|ZP_04216210.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] gi|228699402|gb|EEL52081.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] Length = 262 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L + Q + K+E G +L I + E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTSRQAISKWENGQGFPETEKLLMIGNIFEVSVDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 64 DTAKQSNENEP 74 >gi|190889915|ref|YP_001976457.1| transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] gi|190695194|gb|ACE89279.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] Length = 189 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ G++ + L G++ + + E+ AS L I L +S FF Sbjct: 9 IGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 S ++ ++ P+ L R Sbjct: 69 AEEGQQASPLARRQD--QQVWRDPETGYLRRS 98 >gi|256847452|ref|ZP_05552898.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256716116|gb|EEU31091.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 110 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I R MSQ L + + + Q + K+E G + +S + I+ + Sbjct: 2 IGDKIHELRTQKRMSQTDLAKAIHASQQAITKWENGKSEPSSSVINSIANYFNVSTDYLL 61 Query: 75 DVSPTVCSDIS-SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + D S+ ++ + PD + R IIE+V++ Sbjct: 62 GRTSEKLPDKDLSKNQKLIAYSIDPDT-----------SDEERDAIIEMVQA 102 >gi|218513526|ref|ZP_03510366.1| probable transcriptional regulator protein, LacI family [Rhizobium etli 8C-3] Length = 219 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ G++ + L G++ + + E+ AS L I L +S FF Sbjct: 9 IGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 S ++ ++ P+ L R Sbjct: 69 AEEGQQASPLARRQD--QQVWRDPETGYLRRS 98 >gi|310829026|ref|YP_003961383.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308740760|gb|ADO38420.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 232 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 35/74 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +G ++R+ R + +S +++ +G + + KYE G + S L I+ L Sbjct: 4 DSLNAQIGAQVRMYRKMAKISIDEMARTIGKSRATISKYETGAIGMDVSTLFEIASTLNI 63 Query: 69 PISFFFDVSPTVCS 82 +S D+ + Sbjct: 64 GVSHLLDIPKEDKT 77 >gi|149003610|ref|ZP_01828475.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS69] gi|147758342|gb|EDK65342.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS69] Length = 287 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + + Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRN-YENLEYIYRIE 98 >gi|300933761|ref|ZP_07149017.1| putative transcriptional regulator RamB [Corynebacterium resistens DSM 45100] Length = 497 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 16/132 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R+R R +SQ +L E LGI+ V + E + + L ++ +F Sbjct: 6 VFVGSRLRELRKDRSLSQAQLAEKLGISASYVNQIEHNSRPLTLAVLDKLTATFGVDATF 65 Query: 73 FFDVSPT----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F T D+ + + + L + L R++V Sbjct: 66 FSRGDATRLLAEVQDVVHDREVCPTPVDVAELADLVKNHPT------------LARAMVE 113 Query: 129 SEKKYRTIEEEC 140 +YR + ++ Sbjct: 114 MHSRYRNVSDKL 125 >gi|288353334|ref|YP_003422632.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] gi|285026735|gb|ADC33829.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] Length = 401 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 35/57 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R + +SQE+LG+ +G++ Q + ++E+G A L I VL+ PI FF Sbjct: 26 ERLKDARKFMRLSQEELGKEIGVSRQAISQFERGDRNPDARTLVGIQSVLKQPIEFF 82 >gi|195978893|ref|YP_002124137.1| hypothetical protein Sez_1797 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975598|gb|ACG63124.1| hypothetical protein Sez_1797 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 189 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ G +Q++L + +G+T Q + EKG RLQ I+ L I F + Sbjct: 17 IKNARLKAGKTQKELAKLIGVTKQTIINDEKGTTEPSWDRLQEIATALNVDIDTLFPYN- 75 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-RQKIIELV 123 E ++ + L+ N + ++ + +V QKI++ Sbjct: 76 ------MLGEKRDFKWMEHLERLENNWLYSRMAEEEVLLQKILDFA 115 >gi|84515424|ref|ZP_01002786.1| transcriptional regulator, putative [Loktanella vestfoldensis SKA53] gi|84510707|gb|EAQ07162.1| transcriptional regulator, putative [Loktanella vestfoldensis SKA53] Length = 456 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 14/133 (10%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G RIR +RM +G+ Q L +GI+ + E R+G L ++ L Sbjct: 27 IERMTGTRIREKRMDIGLRQASLASAVGISPSYLNLIEHNRRRIGGKLLTDLARALGVDP 86 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR----QKIIEL-VRS 125 S + D + ++ ++ R +++ R +I L R Sbjct: 87 SHLAGGADRDLLDQLHSAATLAGDMA-----EIARA----EELAARFPGWAGLIALQARR 137 Query: 126 IVSSEKKYRTIEE 138 + +++ + + Sbjct: 138 LAVLDERIGALTD 150 >gi|229489782|ref|ZP_04383639.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229323292|gb|EEN89056.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 211 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+ PV +G R++ R ++ + L E G+T + K E+ + L Sbjct: 1 MAKAKEAVEPVGPRIGARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLI 60 Query: 61 HISEVLESPISFFFDVSPTVC 81 + VLE P+ F+ + Sbjct: 61 KVCAVLEIPVGSLFENASAGE 81 >gi|227498382|ref|ZP_03928532.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903844|gb|EEH89762.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 249 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 9/124 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +I+ R+ M+ + L E + + + KYEKG + S L I+ L P++ Sbjct: 5 KEIGSKIKFYRIQKHMTIKDLAESICKSQATLYKYEKGQIALDLSVLYDIASALSIPVTA 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSEK 131 P ++++ V F S GL F ++KI E L+ I +E+ Sbjct: 65 LLYEPPLPKKEMAASI--VPAFFS---GLT---SFYAYTYDGRQKKIRESLIECIQKAEE 116 Query: 132 KYRT 135 + Sbjct: 117 TDSS 120 >gi|253750928|ref|YP_003024069.1| DNA-binding protein [Streptococcus suis SC84] gi|253752827|ref|YP_003025967.1| DNA-binding protein [Streptococcus suis P1/7] gi|251815217|emb|CAZ50781.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251819072|emb|CAR44086.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|319757177|gb|ADV69119.1| putative DNA-binding protein [Streptococcus suis JS14] Length = 119 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++IR+ R +SQ++L E L I+ Q V K+E G +L ++E+ + + Sbjct: 2 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 61 Query: 73 F 73 Sbjct: 62 L 62 >gi|162454793|ref|YP_001617160.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161165375|emb|CAN96680.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 357 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG +R R G+S E+L + G++ + + E G + + L I+ L P S Sbjct: 177 VGANLRRLRTKRGLSLERLAKASGVSRAMLSQIELGQSTPTINVLWKIARALGVPFS 233 >gi|148998484|ref|ZP_01825925.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|168576644|ref|ZP_02722510.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|307068564|ref|YP_003877530.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|147755677|gb|EDK62723.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|183577638|gb|EDT98166.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|306410101|gb|ADM85528.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 287 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|237745238|ref|ZP_04575719.1| phage transcriptional repressor [Fusobacterium sp. 7_1] gi|229432467|gb|EEO42679.1| phage transcriptional repressor [Fusobacterium sp. 7_1] Length = 204 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G++I R ++Q++L + L I+ Q + YE ++ L I+ + PI F Sbjct: 3 NIGEKIIFLRKKNKITQDELADALEISKQSILNYETEKRQIPIDVLSKIATFFKIPIEAF 62 Query: 74 FDVSPTVCSDI 84 F + +I Sbjct: 63 FSDNYDNFEEI 73 >gi|146319855|ref|YP_001199566.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145690661|gb|ABP91166.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|292557469|gb|ADE30470.1| Helix-turn-helix motif-containing protein [Streptococcus suis GZ1] Length = 121 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++IR+ R +SQ++L E L I+ Q V K+E G +L ++E+ + + Sbjct: 4 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 63 Query: 73 F 73 Sbjct: 64 L 64 >gi|89255372|ref|NP_659801.2| hypothetical protein RHE_PD00237 [Rhizobium etli CFN 42] gi|190894245|ref|YP_001984539.1| hypothetical protein RHECIAT_PB0000282 [Rhizobium etli CIAT 652] gi|218682580|ref|ZP_03530181.1| hypothetical protein RetlC8_27503 [Rhizobium etli CIAT 894] gi|89213326|gb|AAM54815.2| hypothetical protein RHE_PD00237 [Rhizobium etli CFN 42] gi|190699906|gb|ACE93989.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 167 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVS 77 ++ R G+S+ + LG++ +YE+ +++ +R+ H+ E+L PI F+ + Sbjct: 50 LKKTREAQGLSRADVAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFMPIDMIFEAA 109 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 P + S E + L L R ++ + R I L R I ++ R I Sbjct: 110 PHLWGRTSEEAEDC---------LTLARILRRLPNGTTRDLIRLLQRMIPDDDESDRGIS 160 Query: 138 E 138 + Sbjct: 161 D 161 >gi|332299188|ref|YP_004441110.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332182291|gb|AEE17979.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 165 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GK+I R G++Q++L E L ++ Q V K+E V+ + L ++ VL + Sbjct: 4 ISIGKKIAELRKAKGLTQDELSEQLNVSPQAVSKWENDVSYPDITLLPKLAAVLGVTVDD 63 Query: 73 FF--DVSPTVCSDISSEENNVMDFI 95 P ++ NV D + Sbjct: 64 LLTPGKQPETKLVPQADRKNVDDMM 88 >gi|260437610|ref|ZP_05791426.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809963|gb|EFF69168.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 108 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R GMSQE+L E L + YE + +S + I++ L S+ + Sbjct: 11 GTRIREMRKAAGMSQEQLAEILCTKKATISAYENDHIDIKSSIVLEIAKALNCSGSYLLE 70 Query: 76 VSPTVCSDI 84 D+ Sbjct: 71 GKKAEALDV 79 >gi|326790508|ref|YP_004308329.1| hypothetical protein Clole_1405 [Clostridium lentocellum DSM 5427] gi|326541272|gb|ADZ83131.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 159 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G++++ R +SQ++L E G++ +Q+ E G N L I++VL++P+ Sbjct: 3 GEKLKQLRKEKKISQKELAELSGLSISYIQQIESGKKNNPSLEALTAIAKVLDTPMYHLL 62 Query: 75 DVS 77 D S Sbjct: 63 DES 65 >gi|194397893|ref|YP_002038537.1| transcriptional activator [Streptococcus pneumoniae G54] gi|194357560|gb|ACF56008.1| transcriptional activator, putative [Streptococcus pneumoniae G54] Length = 287 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYEDL-EYIYRIE 98 >gi|15901770|ref|NP_346374.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|15903805|ref|NP_359355.1| transcriptional activator [Streptococcus pneumoniae R6] gi|116517204|ref|YP_817168.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|168484245|ref|ZP_02709197.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|221232674|ref|YP_002511828.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|14973451|gb|AAK76014.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] gi|15459444|gb|AAL00566.1| Transcriptional activator [Streptococcus pneumoniae R6] gi|116077780|gb|ABJ55500.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|172042485|gb|EDT50531.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|220675136|emb|CAR69719.1| putative transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|332199372|gb|EGJ13449.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 287 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 V S++S+ ++ + + L Y +I+ Sbjct: 64 EQIEVKSNLSNFKHLSARLLDDRNYDDL-EYLYKIE 98 >gi|19745754|ref|NP_606890.1| repressor protein [Streptococcus pyogenes MGAS8232] gi|139474145|ref|YP_001128861.1| phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|306827718|ref|ZP_07460990.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] gi|19747895|gb|AAL97389.1| putative repressor protein [Streptococcus pyogenes MGAS8232] gi|134272392|emb|CAM30648.1| putative phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|304430036|gb|EFM33073.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] Length = 254 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G++Q++L + + + YEKG + L ++ L I Sbjct: 8 LYIGSKIKELRKNKGLTQKELAILVNMGDTTIANYEKGFRTPKKNTLFKLANALSVTIDD 67 Query: 73 FFDVSPTVCSDISSEE 88 F P SD +S E Sbjct: 68 LF--PPIKKSDKTSHE 81 >gi|78046656|ref|YP_362831.1| XRE family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035086|emb|CAJ22731.1| putative transcriptional regulator, XRE family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 118 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQ-----QVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+R R+ LG+ Q LG LG+ Q ++ +YE G + +++ L P+ Sbjct: 19 GRRLRTARLSLGLRQADLGRMLGMEEQNTGAPRISRYETGQHDPDPETAAELAQALGLPL 78 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++F+ + I D + + R Sbjct: 79 AYFYATPDMLAEAILLIAKLPED--RQQEAIAALRA 112 >gi|294497044|ref|YP_003560744.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294346981|gb|ADE67310.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 180 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKE 60 Query: 73 FFDVSPTVCSDISSEENN 90 FF++ V + EE+ Sbjct: 61 FFEIDTHVQKVVYREEDY 78 >gi|225855439|ref|YP_002736951.1| transcriptional activator [Streptococcus pneumoniae JJA] gi|225723117|gb|ACO18970.1| transcriptional activator [Streptococcus pneumoniae JJA] Length = 287 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 V S++S+ ++ + + L Y +I+ Sbjct: 64 EQIEVKSNLSNFKHLSARLLDDRNYDDL-EYLYKIE 98 >gi|303239088|ref|ZP_07325618.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593426|gb|EFL63144.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 67 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+ IR R MSQE+L G T + + + E G L +I+ L+ P Sbjct: 2 PIRKEVGQNIRKERDRKRMSQEELAGLAGTTQEYISRIENGTRNPSMDLLYNIAGALKCP 61 Query: 70 I 70 + Sbjct: 62 V 62 >gi|295102328|emb|CBK99873.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 208 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D ++ RIR RR L +SQE+L +G + + K EKG+N + ++L+ ++ L++ Sbjct: 3 DTDLSSRIRQRREQLSLSQEELAARMGYRSKSSITKLEKGINDLPRAKLEELAAALDTTP 62 Query: 71 SFFFDVSPTVCSDISSEE 88 ++ ++ C E Sbjct: 63 AWLMGLADLPCPPPGFEP 80 >gi|295704048|ref|YP_003597123.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294801707|gb|ADF38773.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 291 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R + G++Q++L + T Q+ K E G + L IS+ L +++FF Sbjct: 6 IGSVMRDLRKMAGLTQQELSRDI-CTQAQISKIENGEEYPSSITLYKISKRLGVDVNYFF 64 Query: 75 DVSPTVCSD 83 D + D Sbjct: 65 DSVESPRLD 73 >gi|269928987|ref|YP_003321308.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788344|gb|ACZ40486.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 378 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V ++R RR+ G+SQ+ L E G+T Q V E G + ++ L P+ F Sbjct: 10 VESQVRERRIAAGLSQQALAERAGLTRQAVSAIEAGRYLPNTAVALRLARALGCPVEELF 69 Query: 75 ---DVSPTVCSDISSE 87 DV P V +D+ + Sbjct: 70 RLPDVPPRVRADLVGD 85 >gi|237713408|ref|ZP_04543889.1| transcriptional regulator [Bacteroides sp. D1] gi|262406781|ref|ZP_06083330.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|229446647|gb|EEO52438.1| transcriptional regulator [Bacteroides sp. D1] gi|262355484|gb|EEZ04575.1| transcriptional regulator [Bacteroides sp. 2_1_22] Length = 136 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 17/117 (14%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---- 69 ++G++I R + GM+Q LG+ LGIT Q V K E+ ++ R++ +++ L Sbjct: 11 HIGRKIERIRRLRGMTQTDLGDLLGITKQAVSKMEQSE-KIEDERIKRVADALGVTEEGL 69 Query: 70 -----------ISFFFDVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 + F++ S ++I + N ++ S ++L ++I+ K Sbjct: 70 KKFTEETVLYYTNNFYENSNATATNIGTISNLENINHFSMEQAVKLFEELLKIEREK 126 >gi|167749402|ref|ZP_02421529.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] gi|167657574|gb|EDS01704.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] Length = 124 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R++ R+ GM+QE+L E + +T + YE + I+ V + Sbjct: 20 VKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDY 79 Query: 73 FFDVSPTVCS--DISSEENNVMDFISTPDGL 101 + DIS + F+ + L Sbjct: 80 LLGLEDKRSRTLDISGLCEEDIRFLQSAAAL 110 >gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] Length = 169 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 11/105 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL--- 60 Query: 77 SPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKII 120 + + E + + IS + + L +R+KII Sbjct: 61 ---LGEAVVETEADTLKAISEKLEVINLQLA----QKKTMRRKII 98 >gi|303254120|ref|ZP_07340235.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] gi|302598953|gb|EFL65984.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] Length = 287 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|319892096|ref|YP_004148971.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] gi|317161792|gb|ADV05335.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] Length = 179 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R + ++QE+LGE ++ + + E +I EVL + Sbjct: 1 MEIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRD 60 Query: 73 FFDVSPTVCSDISSEEN 89 FFD E Sbjct: 61 FFDDKQVAKVHYPKSEQ 77 >gi|261207860|ref|ZP_05922545.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566605|ref|ZP_06447025.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|260078243|gb|EEW65949.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161595|gb|EFD09475.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 203 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 9/100 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE+L + +G++ Q V K+E + ++ +S+ + Sbjct: 1 MNMSDRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDY 60 Query: 73 FFDVSPTV--CSDISSEENNVMDFISTPDGLQLNRYFIQI 110 V S E + + +IS+ F+ I Sbjct: 61 ILKGIEPVNDKEQKSKEIASKILYISST-------AFVAI 93 >gi|197302037|ref|ZP_03167098.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC 29176] gi|197298846|gb|EDY33385.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC 29176] Length = 336 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ + ++I R G SQE+L E L ++ Q V K+E + +L ++++ E Sbjct: 1 MDMILSEKIAEERKKNGWSQEELAEKLSVSRQAVSKWESASSVPDLQKLLRMAKIFEVST 60 Query: 71 SFFF--DVSPTVCSDISS--EENNVMDFISTPDG 100 + ++ IS E+ V +S + Sbjct: 61 DYLLKDEMGKEEVEKISDYRTEDTVYRNVSMEEA 94 >gi|83940972|gb|ABC48877.1| hypothetical protein [Enterococcus faecium] Length = 203 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 9/100 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE+L + +G++ Q V K+E + ++ +S+ + Sbjct: 1 MNMSDRIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDY 60 Query: 73 FFDVSPTV--CSDISSEENNVMDFISTPDGLQLNRYFIQI 110 V S E + + +IS+ F+ I Sbjct: 61 ILKGIEPVNDKEQKSKEIASKILYISST-------AFVAI 93 >gi|327389117|gb|EGE87463.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] Length = 287 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRN-YDNLEYIYRIE 98 >gi|323464795|gb|ADX76948.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius ED99] Length = 179 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R + ++QE+LGE ++ + + E +I EVL + Sbjct: 1 MEIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRD 60 Query: 73 FFDVSPTVCSDISSEEN 89 FFD E Sbjct: 61 FFDDKQVAKVHYPKSEQ 77 >gi|307287627|ref|ZP_07567670.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306501365|gb|EFM70668.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315165024|gb|EFU09041.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 183 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEGDYVKENPVVKKTETVTQ 85 >gi|294850380|ref|ZP_06791112.1| conserved hypothetical protein [Staphylococcus aureus A9754] gi|294822723|gb|EFG39160.1| conserved hypothetical protein [Staphylococcus aureus A9754] Length = 197 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 44/97 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R M+QE++ LG+T V K+E G + + L I+ +L+ + Sbjct: 3 IGDVIREYRKRKNMTQEQMANYLGVTAPAVNKWENGNSLPDITLLAPIARLLDISLDTLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 T+ ++ ++ +DF + ++ +++ Sbjct: 63 SFHETLSNEEINKIITELDFKLREETYDEAFHYAKLN 99 >gi|228994922|ref|ZP_04154700.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] gi|228764824|gb|EEM13600.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] Length = 116 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 22/120 (18%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++QE+LG +G++ + +EKG G L+ I++ + Sbjct: 2 IGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL- 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + ++S EEN ++ T +G + I+ L+ S+ E+K Sbjct: 61 -LGRSEDPELSEEENKIV----TEEG----------------KNILALIESLPEDERKKA 99 >gi|223933458|ref|ZP_03625443.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|330831854|ref|YP_004400679.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223897896|gb|EEF64272.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329306077|gb|AEB80493.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 121 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++IR+ R +SQ++L E L I+ Q V K+E G +L ++E+ + + Sbjct: 6 QQIRILRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDYL 62 >gi|153955922|ref|YP_001396687.1| hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219856264|ref|YP_002473386.1| hypothetical protein CKR_2921 [Clostridium kluyveri NBRC 12016] gi|146348780|gb|EDK35316.1| Hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219569988|dbj|BAH07972.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 80 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R LGM+ L E +G+ + K E L I+E L + S Sbjct: 2 LGTKIREYRKSLGMTATSLAEKVGVELATISKIENNKANPSMPTLYKIAEALNTTPSELI 61 Query: 75 DVSPTVCSDISSE 87 + +I+SE Sbjct: 62 KDTEIKSFNINSE 74 >gi|307709969|ref|ZP_07646416.1| transcriptional regulator [Streptococcus mitis SK564] gi|307619340|gb|EFN98469.1| transcriptional regulator [Streptococcus mitis SK564] Length = 287 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRN-YDNLEYIYRIE 98 >gi|302391895|ref|YP_003827715.1| XRE family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203972|gb|ADL12650.1| transcriptional regulator, XRE family [Acetohalobium arabaticum DSM 5501] Length = 184 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+N+G ++ R G S KL E ++ + + E+G + L I++ L Sbjct: 3 DIDLNIGTKLHQIRKKKGYSLSKLEEVTEVSKSMLGQIERGTSNPTVKTLWKIAKGLNVS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVM 92 S F + + S +S + + Sbjct: 63 FSTFIEEESSEVSIVSPADTKPL 85 >gi|212710259|ref|ZP_03318387.1| hypothetical protein PROVALCAL_01318 [Providencia alcalifaciens DSM 30120] gi|212687066|gb|EEB46594.1| hypothetical protein PROVALCAL_01318 [Providencia alcalifaciens DSM 30120] Length = 125 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 38/81 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ ++ E+LG L I+ QQ+ +YE+G+ V L I L S FF Sbjct: 23 VGSFIREARLNCSLTGEELGRMLHISQQQISRYERGITSVSIETLDAILNKLGKDWSDFF 82 Query: 75 DVSPTVCSDISSEENNVMDFI 95 SD +E +F+ Sbjct: 83 FKVIANYSDEVAEIKLQDNFL 103 >gi|67078396|ref|YP_246013.1| DNA-binding protein [Bacillus cereus E33L] gi|66970702|gb|AAY60674.1| possible transcriptional regulator [Bacillus cereus E33L] Length = 143 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 31/82 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +++ R G SQE L + ++ Q V K+E G N + +S++ I Sbjct: 1 MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPSIGVIIDLSDLFGITIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + I + D Sbjct: 61 LLRSDGELKEKIIQDSKGSTDL 82 >gi|302388210|ref|YP_003824032.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198838|gb|ADL06409.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 177 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 37/68 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E+ + + L I + L + + Sbjct: 1 MDIGAKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLLDILQCLGTSVGE 60 Query: 73 FFDVSPTV 80 FF+ SP Sbjct: 61 FFNESPEE 68 >gi|323339906|ref|ZP_08080175.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644] gi|323092779|gb|EFZ35382.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644] Length = 179 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GKR++ R+ G +QE++ E L ++ Q + +E G + +S++ + + Sbjct: 45 LNIGKRLKDARIESGYTQEQVAEQLDVSRQTISSWENGRTFPDIVSVVSLSDIYDVSLDV 104 Query: 73 FFDVSPTVCSDISSEENNV 91 + + N V Sbjct: 105 LIKGDEKMLEHLEESTNIV 123 >gi|226366458|ref|YP_002784241.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226244948|dbj|BAH55296.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 184 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 18/117 (15%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R GMS ++ G+ + + E G L + L+ P+S Sbjct: 9 YIGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVPMSQL 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQID-----DVKVRQKIIELV 123 D + I +G +L R + R+ + L Sbjct: 69 LD-----------PPRPRVQVIRADEGPELTSDRADYRATLVASCPPSARRDLYRLA 114 >gi|322806814|emb|CBZ04383.1| DNA-binding protein [Clostridium botulinum H04402 065] Length = 92 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ R +QE+LG+ L ++ Q + YE G S L I+ + + + Sbjct: 3 GDRLKELREEKEFTQEELGKFLNVSRQTISGYESGAIEPSISNLVKIANIFNVSLDYL 60 >gi|317502031|ref|ZP_07960214.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896573|gb|EFV18661.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 293 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++I+ R G+SQEK+ E +G++ Q + K+E G + L I+ + + + Sbjct: 5 EQIKYYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIANLFQISVD 59 >gi|313897846|ref|ZP_07831387.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957381|gb|EFR39008.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 223 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 ++ I E +MD I Sbjct: 68 -ELLSGEWKYIDHTEPYIMDII 88 >gi|326390746|ref|ZP_08212299.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993140|gb|EGD51579.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 160 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R G++Q+ L LG++ + V YE LQ I++ + + Sbjct: 2 LGKRIKELRKKKGLTQKDLALYLGVSDRAVGYYENEQRTPPPDILQKIADFFNVSVDYLL 61 Query: 75 D--VSPTVCSDISSE 87 +P+ + S E Sbjct: 62 GRTDNPSEIKNFSKE 76 >gi|227892275|ref|ZP_04010080.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741] gi|227865916|gb|EEJ73337.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741] Length = 211 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 15/114 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I RR L +Q L + LGIT + V K+E G + AS + + ++LE ++ Sbjct: 14 IGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEINVNELL 73 Query: 75 DVSPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 V D E N+++ + + ++++ V+ + Sbjct: 74 TGEQIVMKDYKKIAEQNLIELRNQKEKAD--------------RRLLTTVKILA 113 >gi|223985560|ref|ZP_03635614.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM 12042] gi|223962467|gb|EEF66925.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM 12042] Length = 174 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 9/129 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +RL R G+SQE LG+ L ++ + +YE + L ++E+ ++ Sbjct: 19 LGENLRLLREERGISQEALGQDLSLSDGAISRYENNAAEPDINTLFGMAEIFGVDFNYLL 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D V D + ++L F Q ++ I L + + ++ + Sbjct: 79 DYHGHV--------RKSQDIVLQNKDVELLTCFHQ-CSSGHQRVIRMLAKELARQDRLWP 129 Query: 135 TIEEECMVE 143 + E +E Sbjct: 130 KLTELTSLE 138 >gi|168186644|ref|ZP_02621279.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] gi|169295453|gb|EDS77586.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] Length = 210 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 38/75 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RI++ R+ ++Q +L + GI+ + YE+G L +IS+ L I+ Sbjct: 1 MNLGERIKMLRLEKNLTQSELAKIAGISRVAIGNYERGTRIPNIDILLNISKALGVTINN 60 Query: 73 FFDVSPTVCSDISSE 87 + + + ++ Sbjct: 61 LLEFDVKLDNGGTAS 75 >gi|148985532|ref|ZP_01818721.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|148990157|ref|ZP_01821397.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|149007428|ref|ZP_01831071.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|168492078|ref|ZP_02716221.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|225857528|ref|YP_002739039.1| transcriptional activator [Streptococcus pneumoniae P1031] gi|307128154|ref|YP_003880185.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|147761000|gb|EDK67969.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|147922252|gb|EDK73373.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|147924551|gb|EDK75639.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|183573649|gb|EDT94177.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|225724859|gb|ACO20711.1| transcriptional activator [Streptococcus pneumoniae P1031] gi|301800717|emb|CBW33365.1| putative transcriptional regulator [Streptococcus pneumoniae OXC141] gi|306485216|gb|ADM92085.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|332071931|gb|EGI82419.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] gi|332072142|gb|EGI82628.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332199268|gb|EGJ13346.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 287 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|126732539|ref|ZP_01748337.1| transcriptional regulator, putative [Sagittula stellata E-37] gi|126706985|gb|EBA06053.1| transcriptional regulator, putative [Sagittula stellata E-37] Length = 433 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P D G RIR +R+ GM Q +L + GI+ + E R+G L I++ L Sbjct: 2 PRDTLTGSRIREKRIAQGMRQSELAKIAGISASYLNLIEHNRRRIGGKLLLEIADALSVE 61 Query: 70 ISFFFDVSPTVCSDISSEENN 90 + + + E + Sbjct: 62 PTHLTEGAGAALIAGLREAAS 82 >gi|329767054|ref|ZP_08258582.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] gi|328837779|gb|EGF87404.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] Length = 181 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ ++QE+LGE ++ + + E+ + +I +VL FF Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D T S E+ + T +G +L Sbjct: 64 DKESTSQKVYYSLEDQ-TSYEETDEGYELT 92 >gi|284006697|emb|CBA71956.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 237 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RIR RR L ++Q ++ + LG++ V K+E G + L +++VL I + Sbjct: 21 ISNRIRDRRKELRLTQNEIAKALGVSRVSVTKWENGDTKPDGENLHILTKVLACNIEWLL 80 Query: 75 DVSPTVCSDIS 85 + D + Sbjct: 81 YGKDSRSEDDT 91 >gi|54308994|ref|YP_130014.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46913424|emb|CAG20212.1| putative transcriptional regulator [Photobacterium profundum SS9] Length = 101 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQ++LG LG+ ++ YEKG + + L+ I++ L P+S+F Sbjct: 10 RLKEARKAAGISQKELGIRLGMDPSSASGRMNHYEKGRHMPDIATLRRIADELGVPLSYF 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F SD S++ +++ +S D +L R Sbjct: 70 F-----CDSDNSAKLACLIEKLSEEDKKELIR 96 >gi|317488245|ref|ZP_07946813.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] gi|316912657|gb|EFV34198.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N G IR R G++Q +L + LG+T + V K+E+G L +SE L +P+ Sbjct: 4 RNTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVET 63 Query: 73 FFDV 76 D Sbjct: 64 LLDG 67 >gi|256823110|ref|YP_003147073.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796649|gb|ACV27305.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 175 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---FD 75 +R R+ G SQE+L E G++ + +Q+ E+G + + ++ V E I+ F Sbjct: 3 VRKLRLKRGWSQEQLAELTGVSTRTIQRIERGQTKPSLETQKSLAAVFEVDIATFEPSLS 62 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 + T D+S+ + N + PD Sbjct: 63 MDSTGEPDMSTTDTNATEPKQQPD 86 >gi|257791038|ref|YP_003181644.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474935|gb|ACV55255.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 197 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N G IR R G++Q +L + LG+T + V K+E+G L +SE L +P+ Sbjct: 4 RNTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVET 63 Query: 73 FFDV 76 D Sbjct: 64 LLDG 67 >gi|225870539|ref|YP_002746486.1| phage repressor-like protein [Streptococcus equi subsp. equi 4047] gi|225699943|emb|CAW93888.1| putative phage repressor-like protein [Streptococcus equi subsp. equi 4047] Length = 232 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R+ +SQE+LG+ LG+ + +EK NR + + + + P +F+ Sbjct: 6 GIQLKTARLSRHISQEQLGQLLGVNKMTISNWEKEKNRPNQKHFEELVSIFQLPAEYFYQ 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 + + +N IS + L Sbjct: 66 ENRLLLPYSQLSASNKEKVISYSESL 91 >gi|169833072|ref|YP_001695308.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] gi|168995574|gb|ACA36186.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] Length = 287 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRN-YDNLEYIYRIE 98 >gi|53748387|emb|CAH58723.1| hypothetical protein [Clostridium sp. RKD] Length = 114 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R ++QE+L +GI+ V K+E G + + L I+ I Sbjct: 4 LLIGEVIYRLRKEKAITQEQLANFIGISTAAVSKWESGTSYPDITLLPVIATFFNVTIDT 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + + + N + + + L Sbjct: 64 LLNFKIQLSDEEVMDIFNKCEKLFSSGDLD 93 >gi|325266458|ref|ZP_08133135.1| LexA family repressor/S24 family protease [Kingella denitrificans ATCC 33394] gi|324981901|gb|EGC17536.1| LexA family repressor/S24 family protease [Kingella denitrificans ATCC 33394] Length = 217 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R ++Q L + + G++ + ++E + + A L +S V ++ Sbjct: 5 IGQRIKQMRKERHLTQNDLAKKIQGVSHAAISQWEADLTKPNADNLYDLSLVFNCDFAWL 64 Query: 74 FDVSPTVCS-----DISSEENNVMDFISTPDGLQ 102 + DIS D++ + L+ Sbjct: 65 LRGGSGNVTQHELLDISKIPVVSYDYL--KEILE 96 >gi|322377175|ref|ZP_08051667.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321281888|gb|EFX58896.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 287 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRN-YDNLEYIYRIE 98 >gi|240144766|ref|ZP_04743367.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203287|gb|EEV01572.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 94 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R+ ++Q++L + LG+ + YE L + + + Sbjct: 1 MNLGEKLKQLRLEKNLTQKQLADRLGVAISAISSYESDTRCPTFDTLIKYARIFHVSTDY 60 Query: 73 FFDVSPTVCSDISS 86 + P D+S Sbjct: 61 LLGLEPIHTLDVSG 74 >gi|212640460|ref|YP_002316980.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561940|gb|ACJ34995.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 162 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 2/109 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++IR R +QE+L + L ++ +V K+E G + +S++ F Sbjct: 29 HIGEQIRRLRNAHDWTQEQLAQRLNVSRSKVSKWENGEVLPDLQSIIDMSDLFRVSTDFL 88 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 PT + + + L + RY + ++ +++ L Sbjct: 89 LGKHPTDEQLLQEVRLAYGTNDMSDEQLSVIRYMN--EQPRLAKRLYAL 135 >gi|210635071|ref|ZP_03298410.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] gi|210158511|gb|EEA89482.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] Length = 226 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R I GMSQ+ L + ++ Q + +E G L +SE+ + + Sbjct: 18 MKIGGRIRELRAIHGMSQDDLAARVYVSRQTISSWENGKTYPDVQSLLLLSEIFGASVDS 77 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 ++ + M ++ Sbjct: 78 LIKGDVNAMNETIDRDAKTMKRLT 101 >gi|169333918|ref|ZP_02861111.1| hypothetical protein ANASTE_00304 [Anaerofustis stercorihominis DSM 17244] gi|169259483|gb|EDS73449.1| hypothetical protein ANASTE_00304 [Anaerofustis stercorihominis DSM 17244] Length = 155 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I R + ++Q++L E L ++ Q + K+E + A +L+ +++ L I + Sbjct: 12 GEKIAKARKNISLTQDQLAEVLDVSRQTISKWESDIAYPEAGKLKLLADTLNVSIDYLLK 71 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 EE + + T +G + Sbjct: 72 DE--------VEETKIPEMKQTSNGYE 90 >gi|307708163|ref|ZP_07644630.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615609|gb|EFN94815.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 225 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ +R LG+ Q++L E +G++ Q K+EKG+++ + + +VL+ P + + Sbjct: 6 KLKQKREELGLEQQELAELIGVSKQAYFKWEKGLSKPTKVNIAKLEKVLKIPEGYLSEDE 65 Query: 78 PTVCSDISSEEN------NVMDFIST 97 + +E N V D +S+ Sbjct: 66 ISSLYKQLTEPNQEKAITYVRDLLSS 91 >gi|295107575|emb|CBL05118.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 143 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 14/121 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R G + ++L E LGI+ ++KYE G + I+ LE S Sbjct: 1 MKVGEKIQRIRKERGYTADQLAEMLGISAVSLRKYEYGERTPKDPMIDEIARCLEVNPS- 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK-IIELVRSIVSSEK 131 ++ SD S+ N+ + + +L F ++ +KV ++ L + S ++ Sbjct: 60 ------SLKSDWGSDANDAIHML-----FELEEAFC-LEPIKVGGTVVLALPEDLGSEDQ 107 Query: 132 K 132 + Sbjct: 108 E 108 >gi|197284938|ref|YP_002150810.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227355341|ref|ZP_03839742.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194682425|emb|CAR42298.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227164565|gb|EEI49436.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 91 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 35/70 (50%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + + + G I+ +R LG++ + L L ++ QQ+ +YE G + + L I Sbjct: 12 SVSMSDFFNKKTGLFIKYKRKELGLTGQDLAIILNVSQQQISRYENGTTNITVTLLNKIL 71 Query: 64 EVLESPISFF 73 +L+S S F Sbjct: 72 MILDSSWSEF 81 >gi|37528124|ref|NP_931469.1| hypothetical protein plu4293 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787561|emb|CAE16665.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 33/72 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN V G+R+R R GMSQE + GI + E+GV + I+ Sbjct: 2 KKPNAVKFLFGQRVRYFRQSSGMSQEAFADKCGIDRTYISGIERGVRNPTLEIINIIASG 61 Query: 66 LESPISFFFDVS 77 L+ ++ FD S Sbjct: 62 LQIELTDLFDFS 73 >gi|329298588|ref|ZP_08255924.1| LexA repressor [Plautia stali symbiont] Length = 211 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L ++Q+ L +G++ V ++EK L ++E+L+ ++ D Sbjct: 8 GERIRQRRKALKLTQQALANGIGVSHVAVSQWEKEETVPRGKHLLRLAELLQCSAAWIID 67 Query: 76 VSPTVCSDISSEEN 89 + + Sbjct: 68 GDGQPFASTHASPA 81 >gi|19551915|ref|NP_599917.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62389574|ref|YP_224976.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41324909|emb|CAF19390.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 124 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 6/89 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPI 70 R++ R + G SQE+L + G++ + YE+ N S + +++ L+ P Sbjct: 15 SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 74 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 + I +E +D + Sbjct: 75 IALMPAGSVPVAKICVDETAAIDVRWPSE 103 >gi|182416964|ref|ZP_02625290.2| putative phage repressor [Clostridium butyricum 5521] gi|237666135|ref|ZP_04526122.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379140|gb|EDT76642.1| putative phage repressor [Clostridium butyricum 5521] gi|237658225|gb|EEP55778.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 198 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 13/122 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRL 59 M NKK+ + RI+ RR L +S E L + G +Q+YE G NR+ R Sbjct: 1 MNDNKKM-----REIVARIKKRREELNLSYEDLSKRTGFGSSTLQRYETGAINRIPIDRF 55 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + +++ LE +S + N D D + L+ F+++++ R+KI Sbjct: 56 EELAKGLEIEPYKLMGWDEDYL--LSQDRKNETDG----DIVDLHNAFLKLNETG-RKKI 108 Query: 120 IE 121 +E Sbjct: 109 LE 110 >gi|167767646|ref|ZP_02439699.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|167710663|gb|EDS21242.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|291560781|emb|CBL39581.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 204 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQE+L + +G++ Q V K+E + ++ +S+ + Sbjct: 6 RIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYILKGI 65 Query: 78 PTVCS 82 V Sbjct: 66 EPVAD 70 >gi|307243365|ref|ZP_07525525.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] gi|306493257|gb|EFM65250.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] Length = 104 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+L R M+Q L L +T + KYE G+ L+ +S++ E + + Sbjct: 4 LGNRIKLLRKEFNMTQTDLANRLNLTKSNISKYENGIVEPSLDILRSMSDLFEVSVDYL 62 >gi|229134433|ref|ZP_04263246.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] gi|228649054|gb|EEL05076.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] Length = 277 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 33/80 (41%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 7 GKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIG 66 Query: 64 EVLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 67 NVFEVSLDYLLKETAEQSNE 86 >gi|227519769|ref|ZP_03949818.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227072857|gb|EEI10820.1| transcriptional regulator [Enterococcus faecalis TX0104] Length = 183 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++ + + + + V R F D + R EL + + S Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHS----YRVFNYYSDNQKRN--FELFQFELDSG 116 Query: 131 KKYRTI 136 KKY+ + Sbjct: 117 KKYQAV 122 >gi|325830857|ref|ZP_08164241.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325487264|gb|EGC89707.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 197 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N G IR R G++Q +L + LG+T + V K+E+G L +SE L +P+ Sbjct: 4 RNTGTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDVELLPGLSERLGTPVET 63 Query: 73 FFDVSPTVCSDISS 86 D V + Sbjct: 64 LLDGRLAVDARTGG 77 >gi|167465684|ref|ZP_02330773.1| Predicted transcriptional regulator with an addtional conserved domain [Paenibacillus larvae subsp. larvae BRL-230010] Length = 355 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + R+ R G + L + I+ Q + KYEK L+ +S+ Sbjct: 2 EASNRFSKFIPDRLIEAREARGFTLTDLANIVEISHQAISKYEKEKATPNHDTLEKLSDA 61 Query: 66 LESPISFFFDVSPTVCSDI 84 L P+++F+ P + Sbjct: 62 LHVPVTYFYKSYPKKVDGV 80 >gi|160894531|ref|ZP_02075307.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] gi|156863842|gb|EDO57273.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] Length = 118 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 11 VDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + G+R+R R GM+Q +LGE G+ + + + E G V + + P Sbjct: 7 IDKEMFGQRLREIRKKHGMTQAELGEKTGLADKYISRIETGKADVSLDCFVKLVNAFDVP 66 Query: 70 ISFFFDVSPTVCSDISSEE 88 ++ S + + E Sbjct: 67 ADYYLQDSISYDYKVEGGE 85 >gi|296395188|ref|YP_003660072.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182335|gb|ADG99241.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 204 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 19/124 (15%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVL 66 D +G RI+ R G+ Q L + + T Q V K E G + I+ +L Sbjct: 18 DRMIGSRIKELREARGLPQSALADAVNTRGERFTQQIVGKIENGQRSLKYQEAILIAHIL 77 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+ F+ ++ +D +E + D LNR + D + + EL+ +I Sbjct: 78 RVPVGVFW-MTGESATDEYAELDVKFD--------NLNRVASRAD-----RALWELLEAI 123 Query: 127 VSSE 130 E Sbjct: 124 AEVE 127 >gi|227355761|ref|ZP_03840154.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227164080|gb|EEI48977.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 76 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 31/48 (64%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 M+ +LG+ L I+ QQ+ +YE+G+N++ L HI + + IS FF+ Sbjct: 1 MTGAELGKLLNISQQQISRYERGINKIPIDILFHILNIFDISISDFFE 48 >gi|255690854|ref|ZP_05414529.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|260623486|gb|EEX46357.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] Length = 132 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N K + +++GK+I R + GM+Q +LGE LGIT Q V K E ++ RL+ Sbjct: 4 IENIKSNH---LHLGKKIERVRRLRGMTQTELGELLGITKQAVSKME-QTEKIDDERLEK 59 Query: 62 ISEVLES 68 I+ L Sbjct: 60 IASALGV 66 >gi|77745351|gb|ABB02576.1| putative transcriptional regulator [Lactobacillus reuteri] Length = 234 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 8/73 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK P+ RI R G++ +++ + +G+ + +YE G Q Sbjct: 1 MSENKK-PH-------NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQ 52 Query: 61 HISEVLESPISFF 73 +S + + + Sbjct: 53 KLSNYFDVTVYYL 65 >gi|331088392|ref|ZP_08337309.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium 3_1_46FAA] gi|330408267|gb|EGG87747.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium 3_1_46FAA] Length = 336 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 30/90 (33%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L LG++ Q V K+E R+ +SE+ + Sbjct: 6 KITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFGVSTDYLLKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + E ++ F Sbjct: 66 MQAENITYHESTESYAEPLKKVTMENANEF 95 >gi|266619410|ref|ZP_06112345.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288869037|gb|EFD01336.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 177 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 37/68 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MDIGAKLKELRILKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTSIGE 60 Query: 73 FFDVSPTV 80 FF+ +P Sbjct: 61 FFNETPEE 68 >gi|221640096|ref|YP_002526358.1| XRE family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221160877|gb|ACM01857.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides KD131] Length = 211 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R L +S L E G++ + + E+G+ R ++ IS+ L P + Sbjct: 7 IGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLL 66 Query: 75 DVSPTVCSD 83 ++ + Sbjct: 67 EMPDQHNPE 75 >gi|206576130|ref|YP_002237033.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|206565188|gb|ACI06964.1| DNA-binding protein [Klebsiella pneumoniae 342] Length = 189 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 1/95 (1%) Query: 1 MVGNKK-IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M +++ P + +N+G +IR R G+S L + G++ + K E G + L Sbjct: 1 MADSERDKPAALSLNIGSKIRRLRQSRGISLNDLSKLSGVSKGALSKLESGSSSPRVDTL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 I+ L P+ + ++ Sbjct: 61 DAIATALRLPVGDLLSGGSRMYPRFEKHRPVPGEY 95 >gi|188581450|ref|YP_001924895.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179344948|gb|ACB80360.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 201 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G ++R+ R +S LG GI+ + K E G + + I+ L P Sbjct: 15 PLEKALGHQVRVLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIASALNVP 74 Query: 70 ISFFF 74 I+ F Sbjct: 75 ITALF 79 >gi|90962310|ref|YP_536226.1| DNA-binding protein [Lactobacillus salivarius UCC118] gi|90821504|gb|ABE00143.1| DNA-binding protein [Lactobacillus salivarius UCC118] Length = 203 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 15/114 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I RR L +Q L + LGIT + V K+E G + AS + + ++LE ++ Sbjct: 6 IGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEINVNELL 65 Query: 75 DVSPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 V D E N+++ + + ++++ V+ + Sbjct: 66 TGEQIVMKDYKKIAEQNLIELRNQKEKAD--------------RRLLTTVKILA 105 >gi|68537028|ref|YP_251733.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|260579374|ref|ZP_05847256.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] gi|68264627|emb|CAI38115.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|258602503|gb|EEW15798.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] Length = 501 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 11/105 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ +L E L ++ V + E + A+ L+ I+ +FF Sbjct: 21 FVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRPLTAAVLERITAAFGVDPTFF 80 Query: 74 FDVSP----------TVCSDISSEENNVMDFIS-TPDGLQLNRYF 107 D T+ +IS +V + + + L R F Sbjct: 81 ADQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHPDLARAF 125 >gi|117922291|ref|YP_871483.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117614623|gb|ABK50077.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 103 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 10/78 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGA 56 M P P+ R++ R G+SQ++LG LG+ ++ +YEKG + Sbjct: 1 MADKIINPLPL------RLKQARTAKGISQKQLGIQLGMEVGTASARMNQYEKGKHTPDY 54 Query: 57 SRLQHISEVLESPISFFF 74 L+ I++ L P+++FF Sbjct: 55 QTLKAIADELGVPVAYFF 72 >gi|293376903|ref|ZP_06623120.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644449|gb|EFF62542.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 192 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 40/82 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE+L E L ++ Q V K+E LQ I+++ + Sbjct: 3 MTLGEKIKKYRQAGGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + + S + EE ++ + Sbjct: 63 LLAMDEKIGSIVLKEEIDIEKY 84 >gi|145294858|ref|YP_001137679.1| hypothetical protein cgR_0805 [Corynebacterium glutamicum R] gi|140844778|dbj|BAF53777.1| hypothetical protein [Corynebacterium glutamicum R] Length = 124 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 6/89 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPI 70 R++ R + G SQE+L + G++ + YE+ N S + +++ L+ P Sbjct: 15 SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 74 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 + I +E +D + Sbjct: 75 IVLMPAGSVPVAKICVDETAAIDVRWPSE 103 >gi|325291680|ref|YP_004277544.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059533|gb|ADY63224.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 197 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N+ + ++ ++G RI+ R G++ ++L G++ + + E+G AS L Sbjct: 5 MMENED--HILERSIGDRIKTLRAQNGLTLDRLAAESGVSRAMISRIERGEASPTASLLA 62 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 I L +S FF S + + + P+ + R I +V Sbjct: 63 RICAALGLSLSGFFAEDEEAVSPLVKKRD--QQLWKDPETGYVRRA---ISPPRV 112 >gi|315651060|ref|ZP_07904094.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486650|gb|EFU76998.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 166 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FF 74 G+ I+ R G++Q+++ + LGI+ Q +YE+ LQ+I++ L+ + + Sbjct: 6 GENIKRIRKSKGLTQKEVAKKLGISQQSFAQYERIDAIPKFKTLQNIADALDVSVGDIIY 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPD-GLQLNRYFIQIDD 112 D + + D + G + F+ I D Sbjct: 66 DGPKDKSRYLIEFTKYLYDHGFKYEYGDESLAAFMGIGD 104 >gi|312127026|ref|YP_003991900.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311777045|gb|ADQ06531.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 267 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 9/91 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L E LGI + YE GV + LQ I+ + + +S Sbjct: 9 RLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIAMYFDVSSDYLLGIS 68 Query: 78 PTVCSD-------ISSEEN--NVMDFISTPD 99 D I+ EEN + DF + Sbjct: 69 SIKKRDFLNSLGKITKEENIKELKDFFKNKE 99 >gi|257871225|ref|ZP_05650878.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805389|gb|EEV34211.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 346 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R G++QE+L + LG+T V K+EKG + L I+ +L+ + Sbjct: 1 MEMGEVIRQYRKKKGLTQEELAKRLGVTAPAVNKWEKGHSHPDILLLAPIARLLDISLDT 60 Query: 73 FFDVSPT 79 F Sbjct: 61 LFSFEKE 67 >gi|182684890|ref|YP_001836637.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|303260328|ref|ZP_07346298.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|303262476|ref|ZP_07348418.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|303265106|ref|ZP_07351019.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] gi|303266032|ref|ZP_07351927.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|303268036|ref|ZP_07353837.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|182630224|gb|ACB91172.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|301802633|emb|CBW35399.1| putative transcriptional regulator [Streptococcus pneumoniae INV200] gi|302636376|gb|EFL66869.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|302638494|gb|EFL68959.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|302642396|gb|EFL72742.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|302644473|gb|EFL74725.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|302645323|gb|EFL75557.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] Length = 287 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|217975334|ref|YP_002360085.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217500469|gb|ACK48662.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 103 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 10/78 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGA 56 M P P+ R++ R+ G+SQ++LG LG+ ++ +YEKG + Sbjct: 1 MADKIINPLPI------RLKQARISKGISQKQLGIQLGMEVGSASARMNQYEKGKHTPDY 54 Query: 57 SRLQHISEVLESPISFFF 74 L+ ++ L P+++FF Sbjct: 55 KTLKAMANELGVPVAYFF 72 >gi|167039360|ref|YP_001662345.1| XRE family transcriptional regulator [Thermoanaerobacter sp. X514] gi|300913999|ref|ZP_07131316.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307725316|ref|YP_003905067.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|166853600|gb|ABY92009.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X514] gi|300890684|gb|EFK85829.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307582377|gb|ADN55776.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] Length = 137 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 12/128 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+ Q+ + + LGIT YE+G L+ +S+ I + Sbjct: 12 QRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLLGR 71 Query: 77 SP-----TVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDVKVR--QKIIELVRSI 126 + ++ S++ +++F + + L+L F Q + R ++II ++++I Sbjct: 72 TDIRSPVDEITEAVSDDPELLEFWNELKEREDLKLL--FKQTKKLSPREIKQIIRIIKAI 129 Query: 127 VSSEKKYR 134 E K Sbjct: 130 EEEEDKGE 137 >gi|332652945|ref|ZP_08418690.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518091|gb|EGJ47694.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 169 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 11/107 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + I+ R G+SQ++L L + Q V K+E+G++ + L +SE LE+P+S Sbjct: 2 LSENIKTIRKSKGLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVSTL- 60 Query: 75 DVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKII 120 + +++ E + + +S + + L F + +R+ + Sbjct: 61 -----LGENVAEAEADTVKVLSEKLEIINL--QFAR--RTAMRKAFL 98 >gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 269 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 11/107 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 102 LSQNLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSVPDSEMLISISEVLETPVSIL- 160 Query: 75 DVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKII 120 + ++ E + + IS + + L R+KII Sbjct: 161 -----LGENVVLPEADTLKAISEKLEVINLQMA----QKKNTRRKII 198 >gi|315127131|ref|YP_004069134.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315015645|gb|ADT68983.1| putative transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 99 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R G++Q++LG LG+ ++ +YEKG + ++ I++ L+ P+++ Sbjct: 7 SRLKSARKAAGLTQQQLGMALGMEPNTASARMNQYEKGKHAPDFLTMKRIAKELDVPVAY 66 Query: 73 FF 74 F+ Sbjct: 67 FY 68 >gi|295108696|emb|CBL22649.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 336 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 30/90 (33%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L LG++ Q V K+E R+ +SE+ + Sbjct: 6 KITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFGVSTDYLLKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + E ++ F Sbjct: 66 MKAENITYHESTESYAEPLKKVTMENANEF 95 >gi|260889935|ref|ZP_05901198.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260860541|gb|EEX75041.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 183 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R ++Q+ L + + I + KYE+G N+ S L I E + +F Sbjct: 15 LKKLRTEKRLTQKALADKINIPVSMISKYEQGTNKPSFSYLSKICRFFEVELDYF 69 >gi|254519524|ref|ZP_05131580.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226913273|gb|EEH98474.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 349 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ RR+ G++QE++ E LG++ V K+EKG++ + L ++ +L ++ Sbjct: 7 IKERRIDQGLTQEQVAEALGVSTPAVNKWEKGISYPDITILPALARLLRVDLNTLLSFKE 66 Query: 79 TVCS-DISSEENNVMDFISTPD 99 V +I N +++ I + Sbjct: 67 DVTDIEIGHFINELVEIIRSSG 88 >gi|168494718|ref|ZP_02718861.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] gi|183575348|gb|EDT95876.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] Length = 287 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|229174292|ref|ZP_04301825.1| Helix-turn-helix domain protein [Bacillus cereus MM3] gi|228609149|gb|EEK66438.1| Helix-turn-helix domain protein [Bacillus cereus MM3] Length = 277 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 33/80 (41%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 7 GKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIG 66 Query: 64 EVLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 67 NVFEVSLDYLLKETAEQSNE 86 >gi|225859710|ref|YP_002741220.1| transcriptional activator [Streptococcus pneumoniae 70585] gi|225721236|gb|ACO17090.1| transcriptional activator [Streptococcus pneumoniae 70585] Length = 287 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|255655662|ref|ZP_05401071.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451664|ref|ZP_06893397.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296878908|ref|ZP_06902908.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259495|gb|EFH06357.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296430180|gb|EFH16027.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 184 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I+VG +IR R +S L + ++ + + E+ + + IS+ L+ I Sbjct: 1 MNIDVGSKIRSLRKSKNISISTLAKNSDLSTGLISQIERNMVVPSIVAMWKISKALDINI 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 +FF+ SDI ++NN Sbjct: 61 GYFFEEIGREDSDIVVKKNN 80 >gi|255306656|ref|ZP_05350827.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 184 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I+VG +IR R +S L + ++ + + E+ + + IS+ L+ I Sbjct: 1 MNIDVGSKIRSLRKSKNISISTLAKNSDLSTGLISQIERNMVVPSIVAMWKISKALDINI 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 +FF+ SDI ++NN Sbjct: 61 GYFFEEIGREDSDIVVKKNN 80 >gi|254975277|ref|ZP_05271749.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092667|ref|ZP_05322145.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100772|ref|ZP_05329749.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255314404|ref|ZP_05355987.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517082|ref|ZP_05384758.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650186|ref|ZP_05397088.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683309|ref|YP_003214594.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686905|ref|YP_003218038.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209472|emb|CBA63001.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212921|emb|CBE04177.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 184 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I+VG +IR R +S L + ++ + + E+ + + IS+ L+ I Sbjct: 1 MNIDVGSKIRSLRKSKNISISTLAKNSDLSTGLISQIERNMVVPSIVAMWKISKALDINI 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 +FF+ SDI ++NN Sbjct: 61 GYFFEEIGREDSDIVVKKNN 80 >gi|126699248|ref|YP_001088145.1| putative transcriptional regulator [Clostridium difficile 630] gi|115250685|emb|CAJ68509.1| Transcriptional regulator, RmlC-type [Clostridium difficile] Length = 187 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I+VG +IR R +S L + ++ + + E+ + + IS+ L+ I Sbjct: 4 MNIDVGSKIRSLRKSKNISISTLAKNSDLSTGLISQIERNMVVPSIVAMWKISKALDINI 63 Query: 71 SFFFDVSPTVCSDISSEENN 90 +FF+ SDI ++NN Sbjct: 64 GYFFEEIGREDSDIVVKKNN 83 >gi|60683798|ref|YP_209648.1| hypothetical protein pDx14.2p11 [Bacillus mycoides] gi|60416575|emb|CAI40627.1| hypothetical protein [Bacillus mycoides] Length = 240 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R+I M+QE + L I+ Q + K+E G + + L +S + I Sbjct: 20 MDIGKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDS 79 Query: 73 FFDVSPTVCSDISSEENN 90 + + I + N Sbjct: 80 LLKEDSNLQNQIIKQSNY 97 >gi|56419029|ref|YP_146347.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] gi|56378871|dbj|BAD74779.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] Length = 120 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 17/117 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R+ ++ + + + LGIT Q KYE G ++ + ++E + Sbjct: 4 NRLKMLRLQKKLTHQDMADFLGITRQGYSKYENGQSQPDIDTINKLAEFFNVTTDYL--- 60 Query: 77 SPTVCSDISSEENNVMDFISTPD-GL---QLNRYFIQIDDVKVRQ----KIIELVRS 125 E++++ + + P+ GL +L + R+ KI E+++S Sbjct: 61 LGRTDDPTPPEQDDIPEELKDPELGLFFKELAEA------PEERREQLLKIWEILKS 111 >gi|210612788|ref|ZP_03289482.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|314950371|ref|ZP_07853647.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|317501730|ref|ZP_07959917.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319937809|ref|ZP_08012211.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] gi|210151402|gb|EEA82410.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|313643322|gb|EFS07902.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|316896852|gb|EFV18936.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319807039|gb|EFW03655.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] Length = 223 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 ++ I E +MD I Sbjct: 68 -ELLSGEWKYIDHTEPYIMDII 88 >gi|325688449|gb|EGD30467.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 205 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R + G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGVEPVVQ 70 >gi|304395821|ref|ZP_07377703.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304356190|gb|EFM20555.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 232 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 36/70 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RIRL+R L ++Q+ L E G+ V +EK + + LQ +++ L+ ++ Sbjct: 17 MNMGERIRLKRKELNLTQQALAEKAGVNRVTVTGWEKDDYQPNGANLQALADALKCDPTW 76 Query: 73 FFDVSPTVCS 82 S Sbjct: 77 LVSGKGESIS 86 >gi|291545509|emb|CBL18617.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 110 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +G RI+ R +QE++ + +G++ Q+ + E GVN V L ++EVL + Sbjct: 5 LGSRIKALRSAKNFTQEQVADQIGVSRQKYARIESGVNSVTLDILSKVAEVLGVTVGDIT 64 Query: 74 --FDVSPTVCSDISSE 87 D SP V E Sbjct: 65 RVLDESPVVEYRAGEE 80 >gi|261886490|ref|ZP_06010529.1| hypothetical protein CfetvA_16566 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 248 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+ ++I+L R +Q L + G++ Q ++ YE G N+ + + L+ I+ L + Sbjct: 1 MNLAQKIKLLRSEKDWTQYDLAQNSGVSLQSIKMYEAGKNKGITTTILKKIAHALNVNVE 60 Query: 72 FFFDVS 77 FF D Sbjct: 61 FFLDSE 66 >gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 111 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +GKRI R+ L ++QE+L E G + + ++E G + L +S+VL I +F Sbjct: 6 IGKRIAEARINLNITQEQLEELSGFSVSTISRFETGRTQPSIENLIKLSKVLNVGIDYFL 65 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 +D+ P + S + + +S Sbjct: 66 YDLIPHNETIQSPTVKDAVTVLS 88 >gi|229075522|ref|ZP_04208510.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] gi|228707618|gb|EEL59803.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] Length = 277 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKIKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNE 86 >gi|268590865|ref|ZP_06125086.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291313648|gb|EFE54101.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 112 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K P P+ VG +R RR+ G++ +G L I+ QQV +YE+G NR+ L Sbjct: 1 MANESKHP-PISHVVGGYLRRRRLDKGLTGRDVGRLLNISQQQVSRYERGSNRMTLDFLM 59 Query: 61 HISEVLESPISFFF 74 + L F Sbjct: 60 TYLDTLGLRYEDFM 73 >gi|88854989|ref|ZP_01129654.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] gi|88815517|gb|EAR25374.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] Length = 489 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R G++ + LG L QV E G + S LQ ++ + + + Sbjct: 20 VGRRIRQLRTDRGLTLDDLGAALNRAASQVSVIENGKRELKLSELQKLARIFDVSVDDLL 79 Query: 75 DVSPTV 80 + P Sbjct: 80 NAEPPS 85 >gi|148993187|ref|ZP_01822753.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|147928161|gb|EDK79179.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|332072036|gb|EGI82523.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] Length = 215 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|219667028|ref|YP_002457463.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537288|gb|ACL19027.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 277 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 11/107 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K I R G +QE+L LG+TFQ V K+E + L +S++L+ I Sbjct: 7 KNICRYRKEKGFTQEELARKLGVTFQAVSKWETSQTLPDITLLPGLSQLLDISIDKLLGF 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 EE Y+ I K+ +++EL+ Sbjct: 67 VSYDKQITIYEEEYKTQ-----------EYYWGIVPSKMCLRVLELI 102 >gi|77464212|ref|YP_353716.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126463054|ref|YP_001044168.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|77388630|gb|ABA79815.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126104718|gb|ABN77396.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] Length = 211 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R L +S L E G++ + + E+G+ R ++ IS+ L P + Sbjct: 7 IGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLL 66 Query: 75 DVSPTVCSD 83 ++ + Sbjct: 67 EMPDQHNPE 75 >gi|323702564|ref|ZP_08114227.1| helix-turn-helix domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532538|gb|EGB22414.1| helix-turn-helix domain protein [Desulfotomaculum nigrificans DSM 574] Length = 380 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 13/128 (10%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G+ I R +S E+L E + +T Q + Y KG + + +L ++ P+ Sbjct: 3 IAVIIGRNIDNLRNSHNVSLEQLAELINVTRQTMSNYIKGKQIIDSGKLAVLARYFNKPL 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +F +EE+N + F+ D + F I ++ +KI ++ + SE Sbjct: 63 EYFL-----------AEEHNELSFMFRADNPK--ENFNDILSSRINRKISTVLEILAMSE 109 Query: 131 KKYRTIEE 138 +K + E Sbjct: 110 RKLAMVPE 117 >gi|315038706|ref|YP_004032274.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] gi|312276839|gb|ADQ59479.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] Length = 135 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 RIR R G+SQ KL + GI + ++E G++ G RL+ I++ L +++ Sbjct: 2 NRIREIRKKQGISQSKLAQLTGIPTSTLSEFENGLHDPGEDRLRKIAQALNVSLNY 57 >gi|121535735|ref|ZP_01667538.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans Nor1] gi|121305700|gb|EAX46639.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans Nor1] Length = 110 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +IR R + G+SQEKL + +G+ + +E G N + ++ I+ + Sbjct: 4 IADKIRQARHLAGLSQEKLADVVGVKRVTLAAWETGRNEPNSEHIRKIALACGVTTDWLL 63 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + P + ++++ + + I+ Sbjct: 64 E-MPEDFTGMANDARAIAEKIA 84 >gi|30261830|ref|NP_844207.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527071|ref|YP_018420.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184664|ref|YP_027916.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|165869280|ref|ZP_02213939.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633298|ref|ZP_02391623.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638844|ref|ZP_02397119.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686265|ref|ZP_02877487.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707323|ref|ZP_02897778.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650592|ref|ZP_02933559.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566460|ref|ZP_03019378.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815396|ref|YP_002815405.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604640|ref|YP_002866215.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683329|ref|ZP_05147190.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723912|ref|ZP_05185698.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734684|ref|ZP_05192396.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741092|ref|ZP_05198780.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755336|ref|ZP_05207370.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759873|ref|ZP_05211897.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256058|gb|AAP25693.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502219|gb|AAT30895.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178591|gb|AAT53967.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714720|gb|EDR20238.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513308|gb|EDR88679.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531336|gb|EDR94014.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127822|gb|EDS96694.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669962|gb|EDT20703.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083736|gb|EDT68796.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562595|gb|EDV16562.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006572|gb|ACP16315.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269048|gb|ACQ50685.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 181 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEQQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAIMTIPPN 112 >gi|296159506|ref|ZP_06842330.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295890214|gb|EFG70008.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 102 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 25/116 (21%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R+ G+SQE+LG GI ++ +YE+G + L I+ VL P+S+F Sbjct: 7 RLREARIRSGLSQERLGIEAGIDEMSASARMNQYERGKHVPDLGTLSRIAAVLNLPVSYF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + V +L + + ++ + K ++K++EL + + Sbjct: 67 YSVEDNEA--------------------ELVQRYHRLPE-KAKKKVLELAGELAGA 101 >gi|325679912|ref|ZP_08159481.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108350|gb|EGC02597.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 135 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 7/120 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++ R G SQE L + L ++ Q V K+E G + A ++ IS F Sbjct: 1 MNIGDKLLFLRNRSGCSQENLADALDVSRQTVSKWELGQSLPDAEKIVAISNFFSVTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKIIELVRSI 126 + V + + + V++F ++ L I D + R ++ E+V+++ Sbjct: 61 LLRDTSPVKIEKNLD-RIVIEFANSASDLDKISKDLVDIARDGIIDEEERLRLFEMVKTV 119 >gi|257867716|ref|ZP_05647369.1| predicted protein [Enterococcus casseliflavus EC30] gi|257874043|ref|ZP_05653696.1| predicted protein [Enterococcus casseliflavus EC10] gi|257801799|gb|EEV30702.1| predicted protein [Enterococcus casseliflavus EC30] gi|257808207|gb|EEV37029.1| predicted protein [Enterococcus casseliflavus EC10] Length = 200 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ RR LGM+QE+L + L ++ + +E G N + L ++++ + + F Sbjct: 5 QMIKERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDELFYD 64 Query: 77 SPTVCSDISSE 87 + + + + Sbjct: 65 DIDLVNKFAED 75 >gi|229159135|ref|ZP_04287181.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342] gi|228624336|gb|EEK81117.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342] Length = 274 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R+I M+QE + L I+ Q + K+E G + + L +S + I Sbjct: 54 MDIGKKIKHLRLINKMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDS 113 Query: 73 FFDVSPTVCSDISSEENN 90 + + I + N Sbjct: 114 LLKEDSNLQNQIIKQSNY 131 >gi|224283083|ref|ZP_03646405.1| Hypothetical transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140233|ref|ZP_07802426.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132743|gb|EFR50360.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 161 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P+ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMPR 60 Query: 73 FFDVSP 78 ++ Sbjct: 61 LMEMPD 66 >gi|319935094|ref|ZP_08009535.1| hypothetical protein HMPREF9488_00366 [Coprobacillus sp. 29_1] gi|319809989|gb|EFW06366.1| hypothetical protein HMPREF9488_00366 [Coprobacillus sp. 29_1] Length = 240 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK++ R G+SQE+L L ++ Q + K+E ++ + IS+ + ++ Sbjct: 1 MSIGKKLLYLRQQRGLSQEELASALHVSRQTISKWESDLSLPDMKMMLSISQFYDVSVTE 60 Query: 73 FFDVSPTVCSDISSE 87 V S S E Sbjct: 61 LLGVDEKENSQESIE 75 >gi|308068246|ref|YP_003869851.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681] gi|305857525|gb|ADM69313.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus polymyxa E681] Length = 182 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G + R G+S +K+ E G++ + + EKG + + L I+ L S F Sbjct: 8 IGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGKSNPTVTTLWKIANGLHVSFSTFL 67 Query: 75 DVSPTVCSDISSEE 88 P + I E+ Sbjct: 68 KEDPPQITKIRRED 81 >gi|259909794|ref|YP_002650150.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965416|emb|CAX56948.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 124 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R GM+Q ++ + L ++ Q VQ +E G R+ S L ++ +L + Sbjct: 16 LGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAVARLLSVSLEDLL 75 Query: 75 DVSPTV 80 +P Sbjct: 76 GEAPEE 81 >gi|215429287|ref|ZP_03427206.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|219556284|ref|ZP_03535360.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T17] gi|260199463|ref|ZP_05766954.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T46] gi|289441846|ref|ZP_06431590.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289568383|ref|ZP_06448610.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289752496|ref|ZP_06511874.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289414765|gb|EFD12005.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289542136|gb|EFD45785.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289693083|gb|EFD60512.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 474 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI+ +++ V + +S G L R + + R+ I Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKKYR 134 R ++E+++ Sbjct: 119 TARLAAATEERFS 131 >gi|322382659|ref|ZP_08056524.1| hypothetical protein PL1_2572 [Paenibacillus larvae subsp. larvae B-3650] gi|322384064|ref|ZP_08057785.1| hypothetical protein PL1_2193 [Paenibacillus larvae subsp. larvae B-3650] gi|321151237|gb|EFX44533.1| hypothetical protein PL1_2193 [Paenibacillus larvae subsp. larvae B-3650] gi|321153374|gb|EFX45796.1| hypothetical protein PL1_2572 [Paenibacillus larvae subsp. larvae B-3650] Length = 367 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + R+ R G + L + I+ Q + KYEK L+ +S+ Sbjct: 14 EASNRFSKFIPDRLIEAREARGFTLTDLANIVEISHQAISKYEKEKATPNHDTLEKLSDA 73 Query: 66 LESPISFFFDVSPTVCSDI 84 L P+++F+ P + Sbjct: 74 LHVPVTYFYKSYPKKVDGV 92 >gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496398|gb|EFM65972.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 128 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 27 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 83 >gi|326203738|ref|ZP_08193601.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986178|gb|EGD47011.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 169 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 11/105 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEELAIKLNVVRQTISKWEQGLSVPDSDILISISEVLETPVSTLL-- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK-VRQKII 120 + E+ V D + + L++ +Q+ K R+KI+ Sbjct: 62 ------GETVIESKVDDLKAISEKLEIIN--LQLAQRKTTRRKIL 98 >gi|229194032|ref|ZP_04320926.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228589432|gb|EEK47357.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 DINVG +I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 DINVGHKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + + F Sbjct: 63 NFFLEDTNTEELVVRANQRKKITF 86 >gi|283479888|emb|CAY75804.1| HTH-type transcriptional regulator dicA; Repressor protein of division inhibition gene dicA [Erwinia pyrifoliae DSM 12163] Length = 137 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R GM+Q ++ + L ++ Q VQ +E G R+ S L ++ +L + Sbjct: 29 LGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAVARLLSVSLEDLL 88 Query: 75 DVSPTV 80 +P Sbjct: 89 GEAPEE 94 >gi|229191715|ref|ZP_04318693.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] gi|228591761|gb|EEK49602.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] Length = 277 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 33/80 (41%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 7 GKKTKGDTHMGFGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIG 66 Query: 64 EVLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 67 NVFEVSLDYLLKETAEQSNE 86 >gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016] gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 83 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK IR R+ ++QE+L E GI + +YE G+ +L+ IS+ LE PIS Sbjct: 4 MKVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISK 63 Query: 73 FFDVSPTVCSDISSEENN 90 ++ T SS N+ Sbjct: 64 LLELEETEIKKGSSIANS 81 >gi|70733674|ref|YP_257314.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347973|gb|AAY95579.1| DNA-binding protein, putative [Pseudomonas fluorescens Pf-5] Length = 120 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 37/76 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +SQ +LG+ + + + +YE+G +R L+ +++ L+ + + Sbjct: 10 ERLRSLRKQKNLSQTELGQLAELHYTHIGRYERGTSRPSGDTLKRLADALDVSSDYLLEG 69 Query: 77 SPTVCSDISSEENNVM 92 + + E+ ++ Sbjct: 70 ASDDAAKAKFEDRELL 85 >gi|316932209|ref|YP_004107191.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599923|gb|ADU42458.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 231 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 38/75 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++++ R + ++QE L + G+T + ++K E G +R L+ I+ ++ + + Sbjct: 9 AYIAEQVKFIRKMHKLTQENLADAAGLTTRTIEKIESGRHRPDEQTLRSIARAMQIDVRY 68 Query: 73 FFDVSPTVCSDISSE 87 F +P + +E Sbjct: 69 FEKPTPEQEARQKAE 83 >gi|315032681|gb|EFT44613.1| helix-turn-helix protein [Enterococcus faecalis TX0017] Length = 183 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 6/112 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ + + + + V S R F D + R EL Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQH-SDDHSY---RVFNYYSDNQERN--FEL 108 >gi|291539377|emb|CBL12488.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis XB6B4] Length = 393 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G++Q + E LGI+ Q V K+E G + L ISE+L+ I Sbjct: 20 ENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSID 74 >gi|260425999|ref|ZP_05779978.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260420491|gb|EEX13742.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 436 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR ILGM Q +L I+ + E R+G L I+E+L S Sbjct: 4 DTLTGSRIRERRNILGMKQAELARRASISASYLNLIEHNRRRIGGKLLLDIAEILGVEPS 63 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 + + E D Sbjct: 64 VLTEGAEATLIASLREAALRAD 85 >gi|268591417|ref|ZP_06125638.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] gi|291313069|gb|EFE53522.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] Length = 185 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I +G++IRL R +S +L GI+ + K E G + L+ I+ L P+ Sbjct: 5 INIKIGQKIRLLRQARDLSLNELSRISGISKAALSKLESGDSNPRIDTLESIAIALRFPL 64 Query: 71 SFFF----DVSPTVCSDISSEENNVMDF 94 S F + P SE+ F Sbjct: 65 SDLFTRQHEAYPYFLKATPSEKEYSQQF 92 >gi|257413729|ref|ZP_05591775.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] gi|257202528|gb|EEV00813.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] Length = 403 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G++Q + E LGI+ Q V K+E G + L ISE+L+ I Sbjct: 30 ENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSID 84 >gi|149012465|ref|ZP_01833496.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|147763521|gb|EDK70457.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] Length = 287 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYLYKIE 98 >gi|21323451|dbj|BAB98078.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] Length = 128 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 6/89 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPI 70 R++ R + G SQE+L + G++ + YE+ N S + +++ L+ P Sbjct: 19 SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 78 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 + I +E +D + Sbjct: 79 IALMPAGSVPVAKICVDETAAIDVRWPSE 107 >gi|228922337|ref|ZP_04085644.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837392|gb|EEM82726.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 277 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNE 86 >gi|225410097|ref|ZP_03761286.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme DSM 15981] gi|225042384|gb|EEG52630.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme DSM 15981] Length = 228 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ + +R R+ GM+QE++ +G+T Q + YE G R L + EV + + Sbjct: 1 MSINQNLRQLRLDCGMTQEQVAAKIGLTRQALSSYESGRTRPDIEMLMRLCEVYGTDLD 59 >gi|332559101|ref|ZP_08413423.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332276813|gb|EGJ22128.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 211 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R L +S L E G++ + + E+G+ R ++ IS+ L P + Sbjct: 7 IGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLL 66 Query: 75 DVSPTVCSD 83 ++ + Sbjct: 67 EMPDQHNPE 75 >gi|260427903|ref|ZP_05781882.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260422395|gb|EEX15646.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 131 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R GM QEKL LG+ + +Q +E ++ A+RLQ ++ +L + + Sbjct: 16 GDRIAAAREAAGMGQEKLARRLGVKLKTLQGWENDLSEPRANRLQMLAGLLNVSMGWLLT 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF-IQIDDVKVR-QKIIELVRSIVSSE 130 S E + + + L R +I R ++ + +R ++ E Sbjct: 76 GEGEGLSGPGDTEPALPADV--NEALLEIRALKTEIQTAGDRLGRLEKTLRRLLKDE 130 >gi|253990606|ref|YP_003041962.1| regulatory protein DicA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782056|emb|CAQ85220.1| similar to dica, regulator of dicb encoded by prophage cp-933 (putative regulatory protein) [Photorhabdus asymbiotica] Length = 135 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R MSQ L E G + ++ YE G+ V +S+ L + Sbjct: 7 IGARIKRLRNQQKMSQAALAELCGWASQSRIGNYESGIRNVSTDDAVILSKALGVSPAEL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + E +S + + L F ++ D + EL++++ ++ Y Sbjct: 67 MFGDAESSQENETSET--CQELSNREKI-LLELFNELPDSEA----DELLKTLEEKKRYY 119 Query: 134 RTIEEECMVEQ 144 + EE ++ Sbjct: 120 NQLLEELSQKK 130 >gi|228949497|ref|ZP_04111751.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810220|gb|EEM56587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 184 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + + F Sbjct: 63 NFFLEDTNTEELVVRANQRKKITF 86 >gi|262199526|ref|YP_003270735.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082873|gb|ACY18842.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 123 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+RL R LGM Q +L G++ + Q+ E G L IS+ L+ +SFF Sbjct: 10 LGQRLRLVREGLGMGQGELASACGVSDARYQEIEAGSYLPSIDELIAISDALDIDVSFFC 69 Query: 75 DV 76 + Sbjct: 70 ED 71 >gi|126699363|ref|YP_001088260.1| putative transcriptional regulator [Clostridium difficile 630] gi|260683416|ref|YP_003214701.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260687012|ref|YP_003218145.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296450990|ref|ZP_06892737.1| transcriptional regulator [Clostridium difficile NAP08] gi|296879044|ref|ZP_06903040.1| transcriptional regulator [Clostridium difficile NAP07] gi|115250800|emb|CAJ68624.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209579|emb|CBA63210.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213028|emb|CBE04367.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296260208|gb|EFH07056.1| transcriptional regulator [Clostridium difficile NAP08] gi|296429917|gb|EFH15768.1| transcriptional regulator [Clostridium difficile NAP07] Length = 87 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +I++ R LG++QE+LG +G + Q + E G N IS + PI F F Sbjct: 3 NKIKILREKLGLTQEQLGRLVGTSRQAINAIETGKNEPSIWLAYDISRIFNEPIESVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESE 66 >gi|150398491|ref|YP_001328958.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030006|gb|ABR62123.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 234 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G +R R LG++ + I+ + K E G + LQ +S L PI Sbjct: 43 LEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIENGNTSPSLTTLQTLSRALGVPI 102 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + FF S + + +D Sbjct: 103 TAFFRRFEEEHSAVFVKAGEGVD 125 >gi|293380865|ref|ZP_06626901.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] gi|290922538|gb|EFD99504.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] Length = 118 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +DI +G+RI+ R ++Q+ L + L ++ Q V K+EKG + RL +SE+ + Sbjct: 2 IDIQAIGQRIKSYRENAKLTQDNLAQKLNVSRQSVSKWEKGGSLPDIDRLVTMSELFDIS 61 Query: 70 IS 71 + Sbjct: 62 LD 63 >gi|296141343|ref|YP_003648586.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029477|gb|ADG80247.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 466 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L E L I+ + + E V + L I++V SFF Sbjct: 5 FVGARLRGLRKERGLSQASLAEALEISPSYLNQIEHDVRPLSVPVLLKITDVFGVDTSFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL-QLNR 105 T E +D ++ + L L R Sbjct: 65 NSQDQTRLIAELREVTMDVDAPTSTEELSDLAR 97 >gi|227113780|ref|ZP_03827436.1| hypothetical protein PcarbP_12483 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 100 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+++ R+ M+QEKLG GI +V +YE G +R + + VL P S+F Sbjct: 16 RLKVARLRAKMTQEKLGVLAGIEEATARSRVSQYESGTHRPTFEMMCAFARVLNVPESYF 75 Query: 74 FDVSPTVCS 82 + V Sbjct: 76 YTVDDGFAE 84 >gi|325689390|gb|EGD31395.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 205 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R + G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGVEPVVQ 70 >gi|261366797|ref|ZP_05979680.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571333|gb|EFB76868.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGKR++ R +G SQ K+ + LG T + +YE G + + ++ + + + Sbjct: 2 IEVGKRLKALRESIGFSQVKMAQALGSTQSSINRYENGQSSPSVELFRRYADYFDVSLDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F +D E + P+ +L Sbjct: 62 IF-----ARTDKPQGETYHFKPKAAPEREEL 87 >gi|169827339|ref|YP_001697497.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168991827|gb|ACA39367.1| transcriptional regulator (phage-related) [Lysinibacillus sphaericus C3-41] Length = 118 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NV +R++ R ++Q + + L I+ YE+G N + +Q ++E + +++ Sbjct: 3 NVSQRLKELRKEAKLTQADVAKFLSISESAYGYYEQGRNEISIGSVQKLAEKYDVSVAYI 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +E F + P+ + + D+ VR+ Sbjct: 63 L-CETDEKQPFDKDEAAFHAFANDPELQVFYKELPKSDEETVRR 105 >gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 513 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +G IR R G++Q +L + LG + V + E+G + L Sbjct: 1 MSETPARTEDILRRIGTLIRDARKHRGLTQTQLADLLGTSQSAVNRIERGAQNLSVDMLN 60 Query: 61 HISEVLE 67 +SE L+ Sbjct: 61 RVSEALD 67 >gi|24379268|ref|NP_721223.1| transcription regulator [Streptococcus mutans UA159] gi|24377185|gb|AAN58529.1|AE014922_4 hypothetical protein; putative transcriptional regulator [Streptococcus mutans UA159] Length = 296 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 R+R R LG+SQEKL E L I+ Q + K+E G L +S+ + I F Sbjct: 8 RLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQLLFGK 67 Query: 76 VSPTVCSDISSEENNVMDFISTPD-GLQLNRYF 107 + D E + D D +QL + Sbjct: 68 EANRQSKDFIYESSTEYDIDGEKDFDIQLGGAY 100 >gi|28379011|ref|NP_785903.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] gi|28271849|emb|CAD64754.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] Length = 120 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI R ++Q L + + ++ + +E V L +S+ + Sbjct: 1 MTIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 + T + ++ DF+ +G Sbjct: 61 LLGKNGTPKWANEKDTKDLQDFLDANEG 88 >gi|315144810|gb|EFT88826.1| helix-turn-helix protein [Enterococcus faecalis TX2141] Length = 183 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|312899924|ref|ZP_07759242.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311292920|gb|EFQ71476.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 183 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|257421865|ref|ZP_05598855.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|257163689|gb|EEU93649.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|315155430|gb|EFT99446.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 183 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|220914053|ref|YP_002489362.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860931|gb|ACL41273.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 201 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG ++R R GM+ +L E G++ V + E+G+ + L ++ L+ P+ FF Sbjct: 20 VGNKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMANPSFTTLAQLAHGLDIPVGRFF 79 Query: 75 DVSPTVCSDI 84 S + Sbjct: 80 IGQDQSRSPV 89 >gi|325290667|ref|YP_004266848.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966068|gb|ADY56847.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 199 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R +SQE L + +G++ Q V K+E + ++ +SE + + Sbjct: 1 MNIADRIQNLRKAKAISQEDLADKVGVSRQAVSKWESEQSVPDLDKIIIMSEYFDVTTDY 60 Query: 73 FFDVSPTVCSDISSE 87 ++ + Sbjct: 61 ILKGIEPALNNQGTH 75 >gi|312278268|gb|ADQ62925.1| Putative transcriptional regulator [Streptococcus thermophilus ND03] Length = 229 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFIS 96 V + E N + + Sbjct: 64 EHEIVEVYLELTEENRQEALR 84 >gi|290580727|ref|YP_003485119.1| hypothetical protein SmuNN2025_1201 [Streptococcus mutans NN2025] gi|254997626|dbj|BAH88227.1| hypothetical protein [Streptococcus mutans NN2025] Length = 294 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 R+R R LG+SQEKL E L I+ Q + K+E G L +S+ + I F Sbjct: 6 RLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQLLFGK 65 Query: 76 VSPTVCSDISSEENNVMDFISTPD-GLQLNRYF 107 + D E + D D +QL + Sbjct: 66 EANRQSKDFIYESSTEYDIDGEKDFDIQLGGAY 98 >gi|229070587|ref|ZP_04203825.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228712492|gb|EEL64429.1| Transcriptional regulator, MerR [Bacillus cereus F65185] Length = 186 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +IN+G++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINIGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + +++ M F Sbjct: 65 NFFLEDTNTEELVVRADQRKKMTF 88 >gi|160937793|ref|ZP_02085152.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] gi|158439232|gb|EDP16985.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ RR + MSQE + + LGI+ Q V K+E G + + L ++ + E IS Sbjct: 1 MALSENIKARRTQIKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELASLFEMSISE 60 Query: 73 FFDVSPTVCSDISSEEN 89 D + E+ Sbjct: 61 LVDPQTYAEEQETQEQK 77 >gi|56695923|ref|YP_166274.1| transcriptional regulator, putative [Ruegeria pomeroyi DSS-3] gi|56677660|gb|AAV94326.1| transcriptional regulator, putative [Ruegeria pomeroyi DSS-3] Length = 432 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 13/114 (11%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+++G+ Q L + I+ + E R+G L I+ L S Sbjct: 4 DTLTGSRIRERRLMIGLRQADLAREVDISASYLNLIEHNRRRIGGKLLVDIAAALSVEPS 63 Query: 72 FFFDVSPTV-----------CSDISSEENNVMDFIST-PDGLQ-LNRYFIQIDD 112 + + S +E + + +F P + L R F ++ Sbjct: 64 MLTEGAEAALLATLREAAADASPTGAEADRIDEFAGRFPGWAELLARLFRRVGS 117 >gi|16078945|ref|NP_389766.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221309780|ref|ZP_03591627.1| hypothetical protein Bsubs1_10396 [Bacillus subtilis subsp. subtilis str. 168] gi|221314102|ref|ZP_03595907.1| hypothetical protein BsubsN3_10327 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319024|ref|ZP_03600318.1| hypothetical protein BsubsJ_10243 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323298|ref|ZP_03604592.1| hypothetical protein BsubsS_10362 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342368|sp|O34647|YOBD_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yobD gi|2619003|gb|AAB84427.1| transcription regulator [Bacillus subtilis] gi|2634278|emb|CAB13777.1| transcriptional regulator (phage-related, Xre family) [Bacillus subtilis subsp. subtilis str. 168] Length = 112 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 11/113 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R ++ E+L E +GI YE + +L ++ + + + + + Sbjct: 4 QRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYILGL 63 Query: 77 SPTVCSDISSEENNVMDFISTP----DGLQLNRYFIQIDDVKVRQKIIELVRS 125 + D E N+ +F+ P DG +L +I D +KI++LV + Sbjct: 64 TDD--PDPKVERKNLKEFLEKPDIHWDGYKLT---PEILDPI--RKILKLVTA 109 >gi|77409837|ref|ZP_00786476.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77171552|gb|EAO74782.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 148 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 31/68 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++QE+L +G++ + ++E G ++ + + +++ + + Sbjct: 2 NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLLGY 61 Query: 77 SPTVCSDI 84 +P D Sbjct: 62 APNKKIDF 69 >gi|329117658|ref|ZP_08246375.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326908063|gb|EGE54977.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 331 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L E L ++ Q V K+E + +R+ ++E+ + Sbjct: 6 KIIEERKRNGWSQEQLAEKLDVSRQSVSKWEGAQSVPDLNRIIQMAEIFGVSTDYLLKED 65 Query: 78 PTVCSDISSEENNVMD-----FISTPDGLQLN 104 + ++ + N D +S + L Sbjct: 66 QIKSTLVADDSNKAFDGKPLRKVSMSEAQDLI 97 >gi|229047313|ref|ZP_04192912.1| Helix-turn-helix domain protein [Bacillus cereus AH676] gi|228724055|gb|EEL75401.1| Helix-turn-helix domain protein [Bacillus cereus AH676] Length = 277 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 33/80 (41%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 7 GKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIG 66 Query: 64 EVLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 67 NVFEVSLDYLLKETAEQSNE 86 >gi|313889218|ref|ZP_07822872.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844772|gb|EFR32179.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 179 Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 5/90 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +IR R+ G++QE+L + +T + + E+ + L I E L + Sbjct: 1 MNIGNKIREMRIEKGLTQEELADRSELTKGFISQIERDLTSPSVDSLLDILEALGTDPGL 60 Query: 73 FFDVSPTV-----CSDISSEENNVMDFIST 97 FF D EN + ++ Sbjct: 61 FFKREENEKIIFNEEDFFESENEELSYVLD 90 >gi|253578754|ref|ZP_04856025.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849697|gb|EES77656.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 206 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+ I+ R+ M+QE+L + I+F ++KYE +L I++ L ++ Sbjct: 1 MNTGEIIKYFRLARNMTQEQLAQDAEISFSTLRKYEANERNPKYEQLSKIADALGISVNL 60 Query: 73 FFDVSPTVCSDI 84 F D SD+ Sbjct: 61 FMDFEIQSVSDL 72 >gi|329116441|ref|ZP_08245158.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906846|gb|EGE53760.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 176 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 18/125 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++QE L +G T + +E + + + + + +++ + + Sbjct: 2 NRLKELRKEKGLTQESLAHGIGTTKLTISNWENEKHVIKSDKAKQLADYFNVSVPYLLGF 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV--RSIVSSEKKYR 134 SD E+ + ++ T DG ++ + ++ EL+ + + E+ Y Sbjct: 62 -----SDFKDEQKSALEVYKTKDGFEVVKS-----------RVAELIGEKRLKIIEENYT 105 Query: 135 TIEEE 139 T + + Sbjct: 106 TYKRD 110 >gi|289425420|ref|ZP_06427197.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] gi|289154398|gb|EFD03086.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] Length = 508 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|262370712|ref|ZP_06064037.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314512|gb|EEY95554.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 182 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +V + +R R + G+SQ++L + G++ + V E G + + ++L I++VLE Sbjct: 9 HVSQNVRHYRSLKGLSQQQLADLAGLSRRMVAGVESGQDNISLAKLSLIADVLEVD 64 >gi|146297633|ref|YP_001181404.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411209|gb|ABP68213.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 37/71 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++++ R G++QE++ + LG+ + YE G+ + + L+++S + +S+F Sbjct: 10 IGQKLQEARKKAGLTQEQVADYLGVNKTLISYYENGIREISIATLRNLSNLYGYTMSYFL 69 Query: 75 DVSPTVCSDIS 85 IS Sbjct: 70 SDDEINEPTIS 80 >gi|291558136|emb|CBL35253.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 106 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R++ R+ GM+QE+L E + +T + YE + I+ V + Sbjct: 2 VKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDY 61 Query: 73 FFDVSPTVCS--DISSEENNVMDFISTPDGL 101 + DIS + F+ + L Sbjct: 62 LLGLEDKRSRTLDISGLCEEDIRFLQSAAAL 92 >gi|30019868|ref|NP_831499.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229043585|ref|ZP_04191294.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|229127155|ref|ZP_04256152.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|29895413|gb|AAP08700.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228656271|gb|EEL12112.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|228725807|gb|EEL77055.1| Transcriptional regulator, MerR [Bacillus cereus AH676] Length = 181 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|238855118|ref|ZP_04645444.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|260664951|ref|ZP_05865802.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|282934260|ref|ZP_06339535.1| transcriptional repressor [Lactobacillus jensenii 208-1] gi|313472501|ref|ZP_07812991.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|238832258|gb|EEQ24569.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|239529934|gb|EEQ68935.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|260561434|gb|EEX27407.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|281301669|gb|EFA93938.1| transcriptional repressor [Lactobacillus jensenii 208-1] Length = 138 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R+ GMSQE+L L ++ Q V K+E G + +L+ +S++ + I + Sbjct: 3 QINERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSKLYDVSIDY 61 >gi|89893759|ref|YP_517246.1| hypothetical protein DSY1013 [Desulfitobacterium hafniense Y51] gi|89333207|dbj|BAE82802.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 361 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I +R +QE+L + +G++ V K+E G + L I+ L + + F Sbjct: 6 GKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYPDITLLPPIARALNTTVDELFS 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + + S + +G Sbjct: 66 YQNELSDNDVSGFTQKATSLYEAEGFD 92 >gi|229162462|ref|ZP_04290423.1| Helix-turn-helix domain protein [Bacillus cereus R309803] gi|228620941|gb|EEK77806.1| Helix-turn-helix domain protein [Bacillus cereus R309803] Length = 277 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK + G+++ R G+SQE L E L T Q + K+E G +L I Sbjct: 7 GKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLIMIG 66 Query: 64 EVLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 67 NVFEVSLDYLLKETVEQSNE 86 >gi|113460568|ref|YP_718632.1| transcriptional regulator [Haemophilus somnus 129PT] gi|112822611|gb|ABI24700.1| transcriptional regulator [Haemophilus somnus 129PT] Length = 146 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R+ ++Q++L G+T ++ YE G +LQ I++ L IS D Sbjct: 4 GKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNIEQLQKIADALNCDISALID 63 Query: 76 VSPTVCSDISS 86 P +I Sbjct: 64 HDPNSIFEIMH 74 >gi|306826019|ref|ZP_07459355.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431735|gb|EFM34715.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 166 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 6 EKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLLLD 65 Query: 75 DVSPTVCSDISSEEN 89 + S +++S EE+ Sbjct: 66 ENSEKGSTEVSLEED 80 >gi|257416739|ref|ZP_05593733.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257158567|gb|EEU88527.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 158 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|257084469|ref|ZP_05578830.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256992499|gb|EEU79801.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|315172481|gb|EFU16498.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 183 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|257081927|ref|ZP_05576288.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256989957|gb|EEU77259.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] Length = 183 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|256961213|ref|ZP_05565384.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384161|ref|ZP_06630055.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386975|ref|ZP_06631544.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|312907888|ref|ZP_07766871.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312978583|ref|ZP_07790321.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951709|gb|EEU68341.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078641|gb|EFE16005.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083645|gb|EFE20608.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|310625979|gb|EFQ09262.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311288732|gb|EFQ67288.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 183 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|255975095|ref|ZP_05425681.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|307285607|ref|ZP_07565746.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967967|gb|EET98589.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|306502831|gb|EFM72096.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 183 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|229545084|ref|ZP_04433809.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|229309976|gb|EEN75963.1| transcriptional regulator [Enterococcus faecalis TX1322] Length = 183 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|229549329|ref|ZP_04438054.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255972038|ref|ZP_05422624.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256956771|ref|ZP_05560942.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300860468|ref|ZP_07106555.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|312953579|ref|ZP_07772416.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|229305566|gb|EEN71562.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255963056|gb|EET95532.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256947267|gb|EEU63899.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300849507|gb|EFK77257.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|310628417|gb|EFQ11700.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|315035920|gb|EFT47852.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315148523|gb|EFT92539.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315151846|gb|EFT95862.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159274|gb|EFU03291.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315170200|gb|EFU14217.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|323481485|gb|ADX80924.1| helix-turn-helix family protein [Enterococcus faecalis 62] gi|327535779|gb|AEA94613.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 183 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|55820932|ref|YP_139374.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55822854|ref|YP_141295.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] gi|55736917|gb|AAV60559.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55738839|gb|AAV62480.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFIS 96 V + E N + + Sbjct: 64 EHEIVEVYLELNEENRQEALR 84 >gi|29376999|ref|NP_816153.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227554043|ref|ZP_03984090.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256616940|ref|ZP_05473786.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256763188|ref|ZP_05503768.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853861|ref|ZP_05559226.1| transcriptional regulator [Enterococcus faecalis T8] gi|256963668|ref|ZP_05567839.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079726|ref|ZP_05574087.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257087532|ref|ZP_05581893.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257090691|ref|ZP_05585052.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257419956|ref|ZP_05596950.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294779679|ref|ZP_06745069.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307270739|ref|ZP_07552030.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307271614|ref|ZP_07552885.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307276796|ref|ZP_07557907.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290439|ref|ZP_07570354.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312905231|ref|ZP_07764351.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|29344465|gb|AAO82223.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227176791|gb|EEI57763.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256596467|gb|EEU15643.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684439|gb|EEU24134.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256710804|gb|EEU25847.1| transcriptional regulator [Enterococcus faecalis T8] gi|256954164|gb|EEU70796.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987756|gb|EEU75058.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256995562|gb|EEU82864.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256999503|gb|EEU86023.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257161784|gb|EEU91744.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294453233|gb|EFG21645.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306498632|gb|EFM68134.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506433|gb|EFM75592.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306511492|gb|EFM80491.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306513049|gb|EFM81690.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310631468|gb|EFQ14751.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315025312|gb|EFT37244.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030397|gb|EFT42329.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315161820|gb|EFU05837.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168539|gb|EFU12556.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315574702|gb|EFU86893.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579274|gb|EFU91465.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315580922|gb|EFU93113.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|329578095|gb|EGG59508.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 183 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ + + + + V Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQ 85 >gi|332363209|gb|EGJ40994.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 205 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGIEPVVQ 70 >gi|308187276|ref|YP_003931407.1| LexA repressor [Pantoea vagans C9-1] gi|308057786|gb|ADO09958.1| LexA repressor [Pantoea vagans C9-1] Length = 210 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIRLRR L ++Q++L + + ++ + ++EK L ++E L ++ Sbjct: 6 LGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEETLPRGENLLRLAEALGCTPAYLI 65 Query: 75 DVSPTVCSDIS 85 D V S+ S Sbjct: 66 DGDGPVFSENS 76 >gi|317046283|ref|YP_004113931.1| hypothetical protein Pat9b_0045 [Pantoea sp. At-9b] gi|316947900|gb|ADU67375.1| protein of unknown function DUF955 [Pantoea sp. At-9b] Length = 361 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I LRR +LG+SQ++L + + I+ + K E+G+ ++++I+ L P+ FF Sbjct: 15 IELRRKMLGLSQKELAQIIAISQGTLSKIEQGLKPATDDQIENIANALNCPVEFFM 70 >gi|256852139|ref|ZP_05557526.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260661292|ref|ZP_05862205.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282932144|ref|ZP_06337598.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297204982|ref|ZP_06922378.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] gi|256615551|gb|EEU20741.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260547747|gb|EEX23724.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281303737|gb|EFA95885.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297149560|gb|EFH29857.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] Length = 138 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R+ GMSQE+L L ++ Q V K+E G + +L+ +S++ + I + Sbjct: 3 QINERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSQLYDVSIDY 61 >gi|167769359|ref|ZP_02441412.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] gi|167668327|gb|EDS12457.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] Length = 205 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R G+SQ L + LG++ Q V K+E + G + L I++VL + Sbjct: 10 ERLKALRKECGISQRALAQRLGVSQQAVAKWEAASSTPGPNALATIADVLGVSSDYL 66 >gi|330831318|ref|YP_004394270.1| putative Zn peptidase [Aeromonas veronii B565] gi|328806454|gb|AEB51653.1| Putative Zn peptidase [Aeromonas veronii B565] Length = 375 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+RL R++ G + ++LGE + ++ Q + +YE + + ++E L FF Sbjct: 7 GERLRLARILNGFTLQELGEAVSVSRQSIHQYESDIRAPASDVTNALAEYLRVQPDFF-- 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQI 110 + D+ E+ + +TP G+ + + + I Sbjct: 65 -ERPLSGDVKPEQCHFRKRQTTPVGVKERVQAYSTI 99 >gi|291534827|emb|CBL07939.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis M50/1] Length = 382 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G++Q + E LGI+ Q V K+E G++ L ISE+L+ I Sbjct: 9 ENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGLSCPSVENLCVISEILDVSID 63 >gi|308235243|ref|ZP_07665980.1| transcriptional regulator [Gardnerella vaginalis ATCC 14018] gi|311115056|ref|YP_003986277.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946550|gb|ADP39254.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 157 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 5/95 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V IR R ++Q++L E LG++ + +YE G + + + I + + F Sbjct: 2 VSVNIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTRLIDKICDKFKVS---LF 58 Query: 75 DVSPTVCSDISS--EENNVMDFISTPDGLQLNRYF 107 D+ S + N ++ + L L R + Sbjct: 59 DIVHEKELSASDKYDLNMKIEVLKERGALLLARLY 93 >gi|259908398|ref|YP_002648754.1| transcriptional repressor DicA [Erwinia pyrifoliae Ep1/96] gi|224964020|emb|CAX55526.1| HTH-type transcriptional regulator DicA [Erwinia pyrifoliae Ep1/96] gi|283478343|emb|CAY74259.1| HTH-type transcriptional regulator dicA; Repressor protein of division inhibition gene dicA [Erwinia pyrifoliae DSM 12163] Length = 133 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RIR RR + +Q L + L I+ V ++E+ + L ++++L+ + Sbjct: 3 NLTIGERIRNRRKEMKFTQRSLAKALKISHVSVSQWERDDSEPTGKNLFALTKILQCTPT 62 Query: 72 F-FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + F + + + D +L FI I D + + + EL E Sbjct: 63 WVLFGDQNQSPQEPTDTPLELDDKQR-----ELIGLFIAITDSEQDELLNEL---RARVE 114 Query: 131 KKYRTIEEECMVEQ 144 +EE Q Sbjct: 115 NNKIRLEELLKARQ 128 >gi|254461150|ref|ZP_05074566.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206677739|gb|EDZ42226.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 190 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L + L + + + E+ ++ L+ I+++L+ P+S F Sbjct: 12 LGADLRALRKSRGLTLSDLADALDRSLGWISQVERDLSEPSVFDLKQIAKILDVPVSILF 71 Query: 75 DVSPTVCSDIS 85 +PT + Sbjct: 72 GQAPTPAQEAG 82 >gi|154496374|ref|ZP_02035070.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] gi|150274457|gb|EDN01534.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] Length = 307 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE LGE LG++ Q + K+E +L +S + E + Sbjct: 1 MTLGQKIQTLRHDAGLSQEGLGEKLGVSRQAISKWEADGAVPEVDKLIALSRLFEVNLHD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 V T + + Sbjct: 61 LLQVEGTSREEPEESGEQPPE 81 >gi|327198606|ref|YP_004327350.1| phage repressor protein [Erwinia phage phiEt88] gi|311875300|emb|CBX44558.1| phage repressor protein [Erwinia phage phiEt88] Length = 236 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+R+ R G+SQ+ LG+ +G++ +QK E G ++ I+E L + Sbjct: 7 ERLRVSRKNKGLSQKALGDLVGVSQANIQKLENGKSQ-STGYAAQIAEALGVSAIWL 62 >gi|293610665|ref|ZP_06692965.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827009|gb|EFF85374.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 183 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 7/83 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 10 HVGTNIRSLRDERDLSQQDLADLAGVSRRTIAALETGQVNISLAKLDSIAAVLGVD---- 65 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 T+ S +E+ V++ ++ Sbjct: 66 ---FKTIVSAPEHKEHAVVNALA 85 >gi|166030371|ref|ZP_02233200.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC 27755] gi|166029840|gb|EDR48597.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC 27755] Length = 159 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + V K + R ++Q++L E LG+ + +E GVN + L I ++ Sbjct: 1 MSDNIKETVAKNLLYYRKKNKITQKELAEKLGVKHNAISSWENGVNSIDIDTLFQICKIF 60 Query: 67 ESPISFFF 74 ++ + Sbjct: 61 GISVNDMY 68 >gi|228933114|ref|ZP_04095975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826555|gb|EEM72328.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 181 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAIMTIPPN 112 >gi|168210486|ref|ZP_02636111.1| immunity repressor protein [Clostridium perfringens B str. ATCC 3626] gi|170711430|gb|EDT23612.1| immunity repressor protein [Clostridium perfringens B str. ATCC 3626] Length = 199 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKRI+ R++ M+Q++L + L + +QKYE + L + +VL + Sbjct: 4 LGKRIKKYRILKNMTQQQLADKLNKSKSTIQKYESDSVNLNTDTLNILCDVLNIDL 59 >gi|163790412|ref|ZP_02184843.1| putative transcriptional regulator [Carnobacterium sp. AT7] gi|159874316|gb|EDP68389.1| putative transcriptional regulator [Carnobacterium sp. AT7] Length = 170 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R G SQ + + L I+ Q + K+E G + + L +S E I Sbjct: 1 MELGERLKQSRTNKGFSQTNVADHLNISRQSISKWENGNSLPDLANLVKLSNYYEVSIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + I + E + D Sbjct: 61 LLKENKQLKNKIEANELEIED 81 >gi|75763251|ref|ZP_00743006.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896766|ref|YP_002445177.1| DNA-binding protein [Bacillus cereus G9842] gi|228900413|ref|ZP_04064641.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228938947|ref|ZP_04101547.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952211|ref|ZP_04114302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958114|ref|ZP_04119849.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228969645|ref|ZP_04130433.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228971829|ref|ZP_04132450.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978437|ref|ZP_04138814.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|229069382|ref|ZP_04202672.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|229079014|ref|ZP_04211566.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|229109288|ref|ZP_04238887.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|229144444|ref|ZP_04272849.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|229178237|ref|ZP_04305608.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|296502428|ref|YP_003664128.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|74489263|gb|EAO52724.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543988|gb|ACK96382.1| DNA-binding protein [Bacillus cereus G9842] gi|228605367|gb|EEK62817.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|228639075|gb|EEK95500.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228674298|gb|EEL29543.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|228704428|gb|EEL56862.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228713869|gb|EEL65754.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228781454|gb|EEM29655.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228787919|gb|EEM35877.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228790054|gb|EEM37848.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228801631|gb|EEM48513.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807482|gb|EEM54010.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820796|gb|EEM66821.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859211|gb|EEN03643.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|296323480|gb|ADH06408.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326939449|gb|AEA15345.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 181 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|304438138|ref|ZP_07398081.1| transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368911|gb|EFM22593.1| transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 128 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KRIR RR LG+SQE+L + +G + + K EKG N + S++ ++ L + Sbjct: 6 KRIRARREELGISQEELAKRMGYKSRSSINKIEKGENDIPQSKIVAFAQALRTTPEALMG 65 Query: 76 -VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + ++ + + + L R Sbjct: 66 WETSDTSPQSNTPSDPASILLDDEEIRTLARN 97 >gi|291536948|emb|CBL10060.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 198 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ +R ++Q++ + LG + + +QKYE G + L+ I+ L P Sbjct: 17 IGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVP 71 >gi|228934904|ref|ZP_04097735.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824804|gb|EEM70605.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 277 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 33/80 (41%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 7 GKKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIG 66 Query: 64 EVLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 67 NVFEVSLDYLLKETAEQSNE 86 >gi|225570544|ref|ZP_03779569.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] gi|225160741|gb|EEG73360.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] Length = 367 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I R G++QE+L E +G++ V K+E G L ++ + + Sbjct: 4 VNIGKNIMKYRRETGITQEQLAEHMGVSKSSVSKWETGNAYPDICLLPELATLFNISVDT 63 Query: 73 FFDVSPTVCSDISSE--ENNVMDFISTPDG 100 P + ++ F S P+G Sbjct: 64 LMGYEPQLTKKRIAKLYRELAEAFPSEPEG 93 >gi|160935455|ref|ZP_02082837.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] gi|158441813|gb|EDP19513.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] Length = 184 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 7/99 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++IR R ++ + + E G++ + + E+G S L+ +SE L Sbjct: 2 VGEKIRKLRKEKKLTLKDIAEATGLSIGYISQLERGAVEPSLSSLRKVSEFLGVSPYLLV 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 D S + + S++ ++ F + F +I Sbjct: 62 DQSEHHPAMVKSDQRPIIKFPKS-------EIFYEIVSP 93 >gi|323492807|ref|ZP_08097949.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] gi|323312878|gb|EGA66000.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] Length = 185 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GK I R G+SQ +L E GIT + E G S LQ I V +S Sbjct: 3 NQEIGKNIVQLRKQHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 72 FFFDVSPTVCSD--ISSEENNVMDFISTPDGLQLN 104 FF + + E+ +++ S ++L Sbjct: 63 EFFTFEKPQSDEVKVVMTEDELVEMGSESVSMKLV 97 >gi|307352662|ref|YP_003893713.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307155895|gb|ADN35275.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 83 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI++ R + M+QE+L E + +T + + E+G I+++ P+ FFF Sbjct: 8 NRIKVYRAMHDMTQEELAEKIRVTRKTINSIERGKYNPSIEVAFKIAKIFRVPVEKIFFF 67 Query: 75 DV--SPTVCSDISSEE 88 + V D SS + Sbjct: 68 EDETPEDVIEDPSSPD 83 >gi|289428534|ref|ZP_06430218.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|295130785|ref|YP_003581448.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] gi|289158228|gb|EFD06447.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|291375959|gb|ADD99813.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] Length = 508 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|254465481|ref|ZP_05078892.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206686389|gb|EDZ46871.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 182 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 9/119 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P+ + + I+ R G S L GI + + E G L ++ Sbjct: 2 SAPHQM---IAAAIQRERNRAGKSLSALAAQAGIAKSTLSQLEAGNGNPSVETLWALAAA 58 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN-RYFIQIDDVKVRQKIIELV 123 L P+S F+ + I + E ++ + L R VR+ I +V Sbjct: 59 LGVPLSLLFETEAPSTTLIRAAEGEPLESEQSDFTAVLLSRC-----PSNVRRDIYRVV 112 >gi|182434296|ref|YP_001822015.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326774809|ref|ZP_08234074.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178462812|dbj|BAG17332.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655142|gb|EGE39988.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 199 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G++ L GI+ + + E G R + I+ E P+ Sbjct: 18 VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRRPSLELMLPIARAHEVPLDDLV 77 Query: 75 DVSPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQIDDV 113 +P + ++ ++ + P GLQ + I + Sbjct: 78 GAAPVGDPRVRAKPIVQHGRTMLPLTARPGGLQ---AYKLIQEP 118 >gi|160938164|ref|ZP_02085520.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] gi|158438968|gb|EDP16724.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] Length = 359 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI +G RI R M+QE+L LG++ V K+E G + S L ++ LE+ + Sbjct: 1 MDIKLGPRIASLRRAKSMTQEQLALSLGVSPPAVSKWETGASCPDISLLCPLARALETNV 60 Query: 71 SFFFDVSPTVCSD 83 T+ + Sbjct: 61 DTLLQFEETLTEE 73 >gi|295093563|emb|CBK82654.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 298 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 9/108 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R ++Q +L + LG + + V K+E+G+ S + E+LE ++ F Sbjct: 6 IGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGICLPDVSVYMELCEILEISVNEFL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + + + + +G + +R+ I+ L Sbjct: 66 AGEDISEDSVREKSDETL-LQVSKEG--------KNKQKFLRRIIVAL 104 >gi|229827500|ref|ZP_04453569.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC 49176] gi|229788438|gb|EEP24552.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC 49176] Length = 217 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G +QE++ E LG++ Q + +E + + +S++ + + + Sbjct: 1 MEIGSKIKKSRTEAGFTQEQVAESLGVSRQTISNWENEKSYPDIISVLKMSDLFKVSLDY 60 Query: 73 FFDVS 77 Sbjct: 61 LLKGE 65 >gi|168487423|ref|ZP_02711931.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] gi|183569749|gb|EDT90277.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] Length = 287 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ RL+R L +SQ+ L + GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRLKRKELRLSQQTLAK--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + L Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRNYDDL-EYLYKIE 98 >gi|160887303|ref|ZP_02068306.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483] gi|237713191|ref|ZP_04543672.1| transcriptional regulator [Bacteroides sp. D1] gi|262409416|ref|ZP_06085958.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294647377|ref|ZP_06724970.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294809001|ref|ZP_06767723.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|156107714|gb|EDO09459.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483] gi|229446849|gb|EEO52640.1| transcriptional regulator [Bacteroides sp. D1] gi|262352628|gb|EEZ01726.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292637336|gb|EFF55761.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294443726|gb|EFG12471.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|295087084|emb|CBK68607.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 132 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N K + +++GK+I R + GM+Q +LG+ LGIT Q V K E ++ RL+ Sbjct: 4 IENIKSNH---LHLGKKIERVRRLRGMTQTELGQLLGITKQAVSKME-QTEKIDDERLEK 59 Query: 62 ISEVLES 68 I+ L Sbjct: 60 IASALGV 66 >gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] Length = 360 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + IR+ R G++QE+L E +GIT V K+E G S + ++E E+ + Sbjct: 7 ENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCVPDVSLMMELAEFFETSVD 61 >gi|153954624|ref|YP_001395389.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347482|gb|EDK34018.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 80 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK IR R+ ++QE+L E GI + +YE G+ +L+ IS+ LE PIS Sbjct: 1 MKVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISK 60 Query: 73 FFDVSPTVCSDISSEENN 90 ++ T SS N+ Sbjct: 61 LLELEETEIKKGSSIANS 78 >gi|116627720|ref|YP_820339.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116100997|gb|ABJ66143.1| transcriptional regulator [Streptococcus thermophilus LMD-9] Length = 229 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFIS 96 V + E N + + Sbjct: 64 EHEIVEVYLELNEENRQEALR 84 >gi|49477369|ref|YP_035961.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328925|gb|AAT59571.1| transcriptional regulator, MerR family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 181 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAIMTIPPN 112 >gi|313837698|gb|EFS75412.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA2] gi|314972637|gb|EFT16734.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA3] gi|328907505|gb|EGG27271.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium sp. P08] Length = 508 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|237733689|ref|ZP_04564170.1| phosphoribosylformylglycinamidine cyclo-ligase [Mollicutes bacterium D7] gi|229383287|gb|EEO33378.1| phosphoribosylformylglycinamidine cyclo-ligase [Coprobacillus sp. D7] Length = 415 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I L+R G++Q++L L ++FQ V K+E G L ++ +LE + Sbjct: 7 VGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGG-LPNVEILSDLAALLEITVDELL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +S + V S ++ + +++ D +V Sbjct: 66 AGVEKELEGLSYSKAGVDIAYSDAIKREM-KQYLKTSDPRV 105 >gi|167755461|ref|ZP_02427588.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] gi|167704400|gb|EDS18979.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] Length = 426 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I L+R G++Q++L L ++FQ V K+E G L ++ +LE + Sbjct: 18 VGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGG-LPNVEILSDLAALLEITVDELL 76 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +S + V S ++ + +++ D +V Sbjct: 77 AGVEKELEGLSYSKAGVDIAYSDAIKREM-KQYLKTSDPRV 116 >gi|300173314|ref|YP_003772480.1| transcriptional activator [Leuconostoc gasicomitatum LMG 18811] gi|299887693|emb|CBL91661.1| transcriptional activator [Leuconostoc gasicomitatum LMG 18811] Length = 280 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R G+SQ++LG+ +G + + + E G+ LQ I ++L PI +FD Sbjct: 9 IRKTRKSRGISQKELGQLIG-SQSMISRIENGLTSPTDRALQQICDILNVPIVDYFDT 65 >gi|300117591|ref|ZP_07055374.1| DNA-binding protein [Bacillus cereus SJ1] gi|298725026|gb|EFI65685.1| DNA-binding protein [Bacillus cereus SJ1] Length = 181 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAIMTIPPN 112 >gi|281491183|ref|YP_003353163.1| XRE family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374924|gb|ADA64442.1| Transcriptional regulator, XRE family [Lactococcus lactis subsp. lactis KF147] Length = 201 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G +QE L E IT + +Q+ E G + V L IS L P+S F+ Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENGTD-VSLDTLASISNALLVPVSELFESI 63 Query: 78 PTVCSDIS 85 ++ Sbjct: 64 EEEAKEVE 71 >gi|229015370|ref|ZP_04172387.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048] gi|228745926|gb|EEL95912.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048] Length = 240 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R+I M+QE + L I+ Q + K+E G + + L +S + I Sbjct: 20 MDIGKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDS 79 Query: 73 FFDVSPTVCSDISSEENN 90 + S I + N Sbjct: 80 LLKEDSNLQSQIIKQSNY 97 >gi|229104167|ref|ZP_04234839.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] gi|228679184|gb|EEL33389.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] Length = 272 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNE 86 >gi|229146197|ref|ZP_04274572.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] gi|228637256|gb|EEK93711.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] Length = 277 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNE 86 >gi|221195204|ref|ZP_03568260.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] gi|221185107|gb|EEE17498.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] Length = 236 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK ++ R G++QE+L E +G+T + V ++E G N L +S+ + Sbjct: 4 VKIGKVLQELRKEKGLTQEQLAEQMGVTRRTVSRWETGSNMPDLDILMELSDFYAVDL 61 >gi|319936625|ref|ZP_08011038.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] gi|319808182|gb|EFW04747.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] Length = 118 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +I+ R G++QE+ G+ +G++ Q V + EK ++ + L+ IS+ PI++ Sbjct: 2 SKIKELREQCGLTQEEFGDKIGMSQQTVSRIEKNIDSLDIKTLKIISQYFHVPINY 57 >gi|237735272|ref|ZP_04565753.1| transcriptional regulator [Mollicutes bacterium D7] gi|229381017|gb|EEO31108.1| transcriptional regulator [Coprobacillus sp. D7] Length = 221 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I L R G++QE+L + L ++ Q V K+E G + +S + I Sbjct: 2 IGDKIILYRKRKGLTQEELADLLEVSRQTVTKWESGSVLPNLDYIMGLSVIFGITIDNLV 61 Query: 75 DVSPTVCSDISSEENNV--MDFI 95 + +I S+ +N +DF+ Sbjct: 62 KDNDCAKQEIESKISNYNWIDFM 84 >gi|167767648|ref|ZP_02439701.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|319938591|ref|ZP_08012978.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] gi|167710665|gb|EDS21244.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|291560782|emb|CBL39582.1| Predicted transcription factor, homolog of eukaryotic MBF1 [butyrate-producing bacterium SSC/2] gi|319806227|gb|EFW02919.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] Length = 223 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 ++ I E +MD I Sbjct: 68 -ELLSGEWKYIDHTEPYIMDII 88 >gi|167755003|ref|ZP_02427130.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402] gi|167705053|gb|EDS19632.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402] Length = 221 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I L R G++QE+L + L ++ Q V K+E G + +S + I Sbjct: 2 IGDKIILYRKRKGLTQEELADLLEVSRQTVTKWESGSVLPNLDYIMGLSVIFGITIDNLV 61 Query: 75 DVSPTVCSDISSEENNV--MDFI 95 + +I S+ +N +DF+ Sbjct: 62 KDNDCAKQEIESKISNYNWIDFM 84 >gi|37526812|ref|NP_930156.1| hypothetical protein plu2922 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786244|emb|CAE15296.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 212 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ RR+ +G++Q +L + +G Q +++ EKG + L ++ L+ +S+ Sbjct: 1 MTIAERVKTRRIEMGLTQTELADLIGTKQQSIEQLEKGKTK-RPRFLPELAVALQCSVSY 59 Query: 73 FFDVSPTVCSDIS 85 + +I Sbjct: 60 LLYGTEDKKEEIE 72 >gi|299136447|ref|ZP_07029630.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298600962|gb|EFI57117.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 137 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P IN+G IR R+ GMSQ + + G+ + + E G LQ I+ L+ Sbjct: 16 PGPAPINIGMTIRDFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAAALD 75 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 P+S FF S + + + F++ Q+ RY + + R+ ++ +VR Sbjct: 76 LPLSQFFAEDSVKDVPGISLKEDEIRFLT-----QVQRYSSNLGESD-RRLLLAMVRKFA 129 Query: 128 SS 129 ++ Sbjct: 130 AT 131 >gi|218690034|ref|YP_002398246.1| putative transcriptional regulator [Escherichia coli ED1a] gi|218427598|emb|CAR08499.2| Putative transcriptional regulator [Escherichia coli ED1a] Length = 115 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R G+SQ+KLG G + ++ +YEKGV+ Q ++E L P+++ Sbjct: 19 KRLKEARTAAGLSQKKLGIAAGIDEFVASTRINRYEKGVHEADIHTAQKLAETLNVPLAY 78 Query: 73 FFDVSPTVCSDISSEEN 89 F+ + + + + EN Sbjct: 79 FYVEDDELATIVMNYEN 95 >gi|170016375|ref|YP_001727294.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803232|gb|ACA81850.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 245 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R+ G++Q++ + L I++Q V +E+ A + + E P+ F Sbjct: 1 MHIGIKIKQLRISQGLTQQEFADKLFISYQSVSNWERQKRHPTAEMMLTMIETFNLPLDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 F + + + E+ + F++ Sbjct: 61 F--IMAHDKAHDNEEDLILSAFLTN 83 >gi|254975493|ref|ZP_05271965.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255092881|ref|ZP_05322359.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255314622|ref|ZP_05356205.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255517296|ref|ZP_05384972.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255650403|ref|ZP_05397305.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|260683516|ref|YP_003214801.1| putative phage repressor [Clostridium difficile CD196] gi|260687176|ref|YP_003218310.1| putative phage repressor [Clostridium difficile R20291] gi|306520382|ref|ZP_07406729.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|260209679|emb|CBA63401.1| putative phage repressor [Clostridium difficile CD196] gi|260213193|emb|CBE04666.1| putative phage repressor [Clostridium difficile R20291] Length = 169 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 11/107 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL- 60 Query: 75 DVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKII 120 + I E + + IS + + L +R+K+ Sbjct: 61 -----LGETIVESEVDSLKVISEKLEIINLQLA----QRKNMRRKMF 98 >gi|70725257|ref|YP_252171.1| hypothetical protein SH0256 [Staphylococcus haemolyticus JCSC1435] gi|68445981|dbj|BAE03565.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 134 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG+RIR R MSQEKL E L ++ + +E+ V+ L ++E+ ++ Sbjct: 4 KSVGERIRNLRKSKKMSQEKLAEKLNVSRHSISNWERDVSSPDIHALLEMTELFGVSLNH 63 Query: 73 FFDVSPTVCS 82 + + Sbjct: 64 LVKGDELIVN 73 >gi|312792894|ref|YP_004025817.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312878073|ref|ZP_07738009.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|311795152|gb|EFR11545.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|312180034|gb|ADQ40204.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 285 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G++QE+L LG+ Q + YE G + + L I++ + + Sbjct: 5 RLKELREEKGLTQEELALMLGLKRQSISNYENGGRQPDYNTLIKIADFFGVTVDYL 60 >gi|229140248|ref|ZP_04268805.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] gi|228643181|gb|EEK99455.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] Length = 277 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKENAEQSNE 86 >gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 107 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R GM+QE+L E LGI + + + E G + RL I+ V+ +P+ F Sbjct: 8 LGLRIRELRKRAGMTQEQLAELLGIDQKHMSRIELGKSYPSLDRLLKIAVVVNAPLPNLF 67 Query: 75 DVS 77 + Sbjct: 68 EFG 70 >gi|308186781|ref|YP_003930912.1| hypothetical protein Pvag_1273 [Pantoea vagans C9-1] gi|308057291|gb|ADO09463.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 185 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 10/130 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ +R R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 HLSGALRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S + D +S L D ++R ++ V + ++ Sbjct: 67 IDGSALPSGTLPGFSQPNAD-MSVRSVLP--------YDPQLRFDLLA-VELVAGAQSHS 116 Query: 134 RTIEEECMVE 143 E C+ + Sbjct: 117 SPHEAGCVEQ 126 >gi|218459628|ref|ZP_03499719.1| hypothetical protein RetlK5_09084 [Rhizobium etli Kim 5] Length = 180 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVS 77 ++ R G+S+ + LG++ +YE+ +++ +R+ H+ E+L PI F+ + Sbjct: 63 LKKTRQAQGLSRADVAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFMPIDMIFEAA 122 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 P + S E + L L R ++ R I L R I ++ R I Sbjct: 123 PHLWGRTSEEAEDC---------LTLARILRRLPTGTTRDLIRLLQRMIPDDDESDRGIS 173 Query: 138 E 138 + Sbjct: 174 D 174 >gi|206970891|ref|ZP_03231843.1| DNA-binding protein [Bacillus cereus AH1134] gi|229189930|ref|ZP_04316940.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206734527|gb|EDZ51697.1| DNA-binding protein [Bacillus cereus AH1134] gi|228593604|gb|EEK51413.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 181 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|153853834|ref|ZP_01995190.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] gi|149753584|gb|EDM63515.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] Length = 377 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R M+QE+L E +G++ Q V K+E +L+ ++E+ E I+ Sbjct: 1 MTLGEKIYKLRTKRSMTQEQLAEKIGVSRQSVSKWETDSAIPDIEKLKLLAEIFEVSIT 59 >gi|71278291|ref|YP_271323.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144031|gb|AAZ24504.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] Length = 180 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 46/92 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGKR++ R + G+SQ +L + +G+T + E+ S L+ I E + ++ Sbjct: 1 MDVGKRLKEVREMYGLSQRELAKRVGLTNSTISMIERDAVSPSISSLKKILEGVSLTVTE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + S + +++ ++D S L L Sbjct: 61 FFTLEIPTESQVVFKKDTLVDVGSDGVELHLV 92 >gi|323694108|ref|ZP_08108287.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323501825|gb|EGB17708.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 177 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++ R + G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MNIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGE 60 Query: 73 FFDVSPTV 80 FF+ +P Sbjct: 61 FFNETPEE 68 >gi|323485345|ref|ZP_08090694.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] gi|323401381|gb|EGA93730.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] Length = 177 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++ R + G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MNIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGE 60 Query: 73 FFDVSPTV 80 FF+ +P Sbjct: 61 FFNETPEE 68 >gi|332970254|gb|EGK09246.1| LexA family repressor/S24 family protease [Kingella kingae ATCC 23330] Length = 206 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ RR+ LG+SQ LG+ G+ + + E G N+ ++++ ++ L++ + + D Sbjct: 5 ERVKNRRLELGLSQAALGKLAGVPQSTIGQIENGRNK-SSTKILELAHALQTTVEYLVDG 63 Query: 77 SPTVCSDIS 85 S Sbjct: 64 VEPAQKQPS 72 >gi|225377108|ref|ZP_03754329.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] gi|225211013|gb|EEG93367.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] Length = 178 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G IR R G++QE++ + LG+T V K+E G L I+ +L + Sbjct: 4 MQIGSVIRKYRKECGLTQEEMAKRLGVTTPAVNKWENGNTNPDIELLAPIARLLHISLD 62 >gi|212712673|ref|ZP_03320801.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens DSM 30120] gi|212684589|gb|EEB44117.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens DSM 30120] Length = 91 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++++ N N+G+ ++ R G++ +L + + ++ QQ+ +YE GVN + +L Sbjct: 1 MRESEQLSN----NIGRMLKDYRRRTGLTGSELAKRINVSQQQISRYENGVNNISFDKLI 56 Query: 61 HISEVLES---PISFFFD 75 + LE I FF+ Sbjct: 57 ILFNALEMSSRDIDVFFE 74 >gi|210612865|ref|ZP_03289498.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] gi|210151386|gb|EEA82394.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] Length = 223 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 ++ I E +MD I Sbjct: 68 -ELLSGEWKYIDHTEPYIMDII 88 >gi|23465550|ref|NP_696153.1| hypothetical protein BL0981 [Bifidobacterium longum NCC2705] gi|239621901|ref|ZP_04664932.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326214|gb|AAN24789.1| hypothetical protein with helix turn helix motif [Bifidobacterium longum NCC2705] gi|239515092|gb|EEQ54959.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517097|emb|CBK70713.1| Predicted transcriptional regulators [Bifidobacterium longum subsp. longum F8] Length = 277 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 117 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 176 Query: 73 FFDVSP 78 ++ Sbjct: 177 LMEMPD 182 >gi|319935773|ref|ZP_08010202.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319809208|gb|EFW05657.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 255 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I + ++ R G SQE L + LGI+ Q V K+E+ L ++++ + Sbjct: 1 MNIEIANKLLQLRKEKGYSQEALAQELGISRQAVSKWERAEASPDTDNLIELAKLYGISL 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 PT + S++ Sbjct: 61 DQLLLHEPTETEETISDKTE 80 >gi|313204771|ref|YP_004043428.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444087|gb|ADQ80443.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 186 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R G+SQE+L E GI + +Q+ E + + + I +VL+ Sbjct: 4 IGEKIKELRRKKGLSQEELAEQAGINLRTIQRIENNESEPRGNTMHLICKVLDIHAEDIL 63 Query: 75 DVSPTVCSDI 84 D + Sbjct: 64 DYGKQTDNSF 73 >gi|149188518|ref|ZP_01866811.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] gi|148837736|gb|EDL54680.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] Length = 185 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +GK I R G+SQ +L E GIT + E S LQ I V Sbjct: 1 MDNHQIGKNIAQLRKERGLSQRELAEKAGITHSAISSIENAKVSPSVSSLQKIVNVFSLS 60 Query: 70 ISFFFDVSPTVCSDI 84 +S FF + +I Sbjct: 61 LSEFFTLEQQENKEI 75 >gi|91201004|emb|CAJ74061.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 209 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K + + +VGK+++ R ++Q++L G++ + + E G + L +S Sbjct: 128 KNSKDKLKSDVGKKLKFLRKSKKITQKQLANRTGLSPSLLSQIENGQIAASLNTLDKLSA 187 Query: 65 VLESPISFFFDVSPTV 80 L +S+F + +PT Sbjct: 188 SLNVKLSYFLEENPTE 203 >gi|92113335|ref|YP_573263.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796425|gb|ABE58564.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 205 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G RI+ RM G+S+ L +G++ + +E G + +G RL ++E LE P+ Sbjct: 4 LGPRIKQLRMEAGLSKAALARRVGVSDVTISYWESGTIKQIGHERLLSLAEALECPLERL 63 Query: 74 FDVSPTVCSDISSE 87 D + + E Sbjct: 64 LDNNTPTHHEFEGE 77 >gi|50842706|ref|YP_055933.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|50840308|gb|AAT82975.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|332675629|gb|AEE72445.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes 266] Length = 548 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 49 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 104 >gi|313904771|ref|ZP_07838144.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470374|gb|EFR65703.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 204 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGK I R GM+Q L E LGI+ + + K+E G + + + E L+ ++ Sbjct: 4 IKVGKFIAACRKEQGMTQANLAEKLGISDRAISKWETGKSMPDTGIMLELCEHLKINVNE 63 Query: 73 FFDVSP--TVCSDISSEEN 89 D +EEN Sbjct: 64 LLSGEKIMAELYDKRAEEN 82 >gi|291087102|ref|ZP_06345414.2| DNA-binding protein [Clostridium sp. M62/1] gi|291076197|gb|EFE13561.1| DNA-binding protein [Clostridium sp. M62/1] Length = 237 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 24 IGSKIKAARLEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 83 Query: 75 DVSPTVCS--DISSEENNVM 92 + + D E NV+ Sbjct: 84 KGEQKMKTYYDYLEESTNVV 103 >gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] Length = 122 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI++ R+ ++QE + + +GIT Q V E G V + L I+ L ++ Sbjct: 8 IGKRIKIARIKKNLTQEAIADKIGITPQHVSNIETGNASVSLTTLVAIANTLTVSVNDL 66 >gi|184159752|ref|YP_001848091.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183211346|gb|ACC58744.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509665|gb|ADX05119.1| Putative HTH-type transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 183 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ V Sbjct: 2 SQSSSVLQHVGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAV 61 Query: 66 LESP 69 L Sbjct: 62 LGVD 65 >gi|162448119|ref|YP_001621251.1| membrane-anchored DNA-binding protein [Acholeplasma laidlawii PG-8A] gi|161986226|gb|ABX81875.1| membrane-anchored DNA-binding protein, putative [Acholeplasma laidlawii PG-8A] Length = 231 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 6/84 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R +QE+LGE L ++ Q + K+E +L +S++ ++ + + Sbjct: 4 GQRLAKLRKDHNYTQEELGELLDVSRQSISKWESDQAFPETQKLIELSKLYQTSVDYL-- 61 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 + ++ ++N+ D T + Sbjct: 62 ----LGNENEHTQSNIGDSTHTNE 81 >gi|120435032|ref|YP_860718.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577182|emb|CAL65651.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 136 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 25/142 (17%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---I 70 ++G++I R + GM QE L E LGI+ Q V K E+ +V +L I++VL I Sbjct: 9 HIGRKIGRIRELRGMKQETLAEELGISQQAVSKIEQSE-KVEDDKLNQIAKVLGVTKEGI 67 Query: 71 SFFFDVSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-------L 122 F D + + + + +N P F I+ K++E L Sbjct: 68 ESFSDEAIFNIIGNTVTNHDNSSLLCFQP-------NFNPIE------KLVEVYEENKKL 114 Query: 123 VRSIVSSEKKYRTIEEECMVEQ 144 ++ +E++ T E+ M E+ Sbjct: 115 YERLLKAEQEKITYLEKLMKEK 136 >gi|228966529|ref|ZP_04127582.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228793251|gb|EEM40801.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 277 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK + G+++ R G+SQE L + L T Q V K+E G +L I Sbjct: 7 GKKTKGDTHMGFGEKLFKLRKEKGLSQEALADKLNTTRQAVSKWENGQGFPETEKLIMIG 66 Query: 64 EVLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 67 NVFEVSLDYLLKETAEQSNE 86 >gi|254512974|ref|ZP_05125040.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221532973|gb|EEE35968.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 195 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G ++ R S L E GI+ + + E G+ L +++ LE PI Sbjct: 10 IDRAIGASLKELRQSRKQSARWLAEQSGISAAMISRIENGLVSPSIDTLAALADALEVPI 69 Query: 71 SFFFDVSPTVCSD 83 F + T +D Sbjct: 70 VSLFREARTEHTD 82 >gi|313499113|gb|ADR60479.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 199 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R GM+ +L +T + + E+ ++ L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSD 83 F T + Sbjct: 79 FASEATTAPE 88 >gi|313889792|ref|ZP_07823434.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121837|gb|EFR44934.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 182 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 47/103 (45%), Gaps = 11/103 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++Q++L + +G+ ++ +Q +E G + + Q +++ + + Sbjct: 2 NRLKKLREESSLTQQELAKKIGVHYRTIQNWENGTQ-IKPEKAQMLADYFSVSVGYLLGY 60 Query: 77 SPTVCSDISSEENNV-----MDFISTPDG-----LQLNRYFIQ 109 + +D EEN +D +++ D L + R F++ Sbjct: 61 TDYKNTDEYFEENEDTFSINVDILNSIDTIGEKNLHVVRNFLK 103 >gi|312870378|ref|ZP_07730503.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311094079|gb|EFQ52398.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 126 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R G+SQE+L + L ++ Q + K+E G ++ I+ +L + Sbjct: 6 QQLTKLRQAAGLSQEQLADQLHVSRQAISKWENGSALPDIEKIIQIASILHVSLD 60 >gi|300819725|ref|ZP_07099914.1| transcriptional repressor DicA [Escherichia coli MS 107-1] gi|300527676|gb|EFK48738.1| transcriptional repressor DicA [Escherichia coli MS 107-1] Length = 135 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 11/115 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RIR RR L +Q L + L I+ V ++E+ + L +S+VL+ + Sbjct: 5 NLTIGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERDDSEPTGKNLFALSKVLQCSPT 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-------VKVRQKI 119 + E+ + +P L+L F + + ++R ++ Sbjct: 65 WILFGDEDKQPTPPVEKPVAL----SPKELELLELFNALPESEQDTQLAEMRARV 115 >gi|218283651|ref|ZP_03489613.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] gi|218215711|gb|EEC89249.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] Length = 145 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R+ G+SQE+ GE +GI V K E G N + L I + Sbjct: 23 IGTRVKKVRLRKGISQEQFGEIIGIKKAAVSKIENGENSLSKGNLLAICRQFNVNKEWLI 82 Query: 75 DVSPTVCSDISSEEN 89 + + + + S E+ Sbjct: 83 NGNGEMFTPKSKEDE 97 >gi|187777952|ref|ZP_02994425.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] gi|187774880|gb|EDU38682.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] Length = 384 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I +R G++QE+L + +G++ V K+E G++ L I+ + Sbjct: 7 LNIGNCIVHKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPEIATYFNISVDE 66 Query: 73 FFDVSPTVCSD 83 SP + + Sbjct: 67 LLGYSPQLTKE 77 >gi|183598410|ref|ZP_02959903.1| hypothetical protein PROSTU_01806 [Providencia stuartii ATCC 25827] gi|188020589|gb|EDU58629.1| hypothetical protein PROSTU_01806 [Providencia stuartii ATCC 25827] Length = 104 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I R G+S +L + L + Q V + E+GV R+ +++ I+ L+ I+ Sbjct: 11 VGSNIHKARRAKGLSGSELADLLLCSQQHVSRIERGVIRLHLEQIKQIANSLDIDINCLL 70 Query: 75 DV 76 D Sbjct: 71 DG 72 >gi|146317667|ref|YP_001197379.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|145688473|gb|ABP88979.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] Length = 111 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++IR+ R +SQ++L E L I+ Q V K+E G +L ++E+ + + Sbjct: 4 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 63 Query: 73 F 73 Sbjct: 64 L 64 >gi|167033912|ref|YP_001669143.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860400|gb|ABY98807.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 199 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R GM+ +L +T + + E+ ++ L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSD 83 F T + Sbjct: 79 FASEATTAPE 88 >gi|26989587|ref|NP_745012.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24984467|gb|AAN68476.1|AE016480_3 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 199 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R GM+ +L +T + + E+ ++ L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSD 83 F T + Sbjct: 79 FASEATTAPE 88 >gi|148548035|ref|YP_001268137.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512093|gb|ABQ78953.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 199 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R GM+ +L +T + + E+ ++ L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSD 83 F T + Sbjct: 79 FASEATTAPE 88 >gi|311899387|dbj|BAJ31795.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 188 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 R+R R +S E L +G+T + K E+G++ S I+E L + F + Sbjct: 4 RLRALRTQNRLSLEALAAQVGVTKSYLSKVERGLSEPSISTALKIAEALGVEVGRLFSEE 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDG 100 V P + + + + E + P+G Sbjct: 64 VEPELVTVVRAGERTP---LGGPEG 85 >gi|262281939|ref|ZP_06059708.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262262393|gb|EEY81090.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 210 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLKGI 65 Query: 78 PTVCS 82 V Sbjct: 66 EPVVQ 70 >gi|228945460|ref|ZP_04107812.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814213|gb|EEM60482.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 149 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 10/118 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD-------GLQLNRYFIQIDDVKVRQKIIELV 123 + + I +E N DF + GL + F ID +++ ++ + Sbjct: 61 LIKGNQNIKEKIHIDEEN-EDFEKENEFGFYIGFGLLIMSAF--IDYEGIQKMLLGIA 115 >gi|253991742|ref|YP_003043098.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638517|emb|CAR67138.1| putative transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783192|emb|CAQ86357.1| putative transcriptional regulator [Photorhabdus asymbiotica] Length = 95 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 4/93 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 V+ + KR++ R+ ++QEKLG GI +V +YE G ++ + S+VL Sbjct: 2 VNFMINKRLKAARLRANITQEKLGIAAGIDEKSARARVSQYENGTHQPTFEIMCAFSKVL 61 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 P +F+ V+ + + S ++++ P+ Sbjct: 62 NVPECYFYTVNDDLADIVLSIHQILVNYKHAPE 94 >gi|332968066|gb|EGK07153.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 152 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+R R+ M QE L +GI+ + YE+G L+ I++ F Sbjct: 10 RILGQRLRTLRLEKKMRQEDLAREIGISKSAIGMYERGEREPSLILLREIADFFRVSADF 69 Query: 73 F--------FDVSPTVCSDISSEENNVMDFISTPD 99 F + SD + N+ +F++ D Sbjct: 70 LLGRSDRASFPSNLRRKSDPPGADGNLKNFLTRKD 104 >gi|320539393|ref|ZP_08039062.1| putative transcriptional regulator [Serratia symbiotica str. Tucson] gi|320030518|gb|EFW12528.1| putative transcriptional regulator [Serratia symbiotica str. Tucson] Length = 125 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++V R+ R G++Q+ L + +G+ Q+++YE G ++ ++ I++ L Sbjct: 12 MSVSTRLAYIRKSKGLTQQALADAIGLHVTQIKRYEAGTSQPSLEAIKKIAQTLRVTTDS 71 Query: 73 --FFDVSPTVCSDIS 85 F + +D++ Sbjct: 72 LIFDEGELAPDADLA 86 >gi|317122090|ref|YP_004102093.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592070|gb|ADU51366.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 216 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VGKRIR R G+S L G++ + + E + + I+ L ++ Sbjct: 1 MEVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVILRIATALGVSLT 60 Query: 72 FFFDVSPTVCSDIS 85 P V D + Sbjct: 61 ELLGPLPAVEGDAA 74 >gi|312134838|ref|YP_004002176.1| XRE family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311774889|gb|ADQ04376.1| transcriptional regulator, XRE family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G+ Q+ + + L I+ Q + YE G ++ ++ + Sbjct: 15 GLRIRELREKQGLQQKDVAKKLNISNQALSNYELGKRMPSLEMVKKFADFFNVSTDYLMG 74 Query: 76 VSPTVCSDISSEENNVMDFI 95 + T + + +++ V F+ Sbjct: 75 L--TNSPNPNQDDDVVKKFL 92 >gi|289423964|ref|ZP_06425757.1| hypothetical phagelike protein [Peptostreptococcus anaerobius 653-L] gi|289155741|gb|EFD04413.1| hypothetical phagelike protein [Peptostreptococcus anaerobius 653-L] Length = 253 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF-- 73 KRI+ +R+ LG++QE+LG+ +G V KYE G V + S ++ +S + + Sbjct: 41 KRIKEKRLELGLTQEELGKMIGTQRAAVNKYESGLVENMKRSTIKQLSLIFNVDPKWLMA 100 Query: 74 FDVSPTVCSDISSE 87 FD+ + +E Sbjct: 101 FDIDEINTGNNHNE 114 >gi|228907521|ref|ZP_04071378.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228852013|gb|EEM96810.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|212710973|ref|ZP_03319101.1| hypothetical protein PROVALCAL_02042 [Providencia alcalifaciens DSM 30120] gi|212686141|gb|EEB45669.1| hypothetical protein PROVALCAL_02042 [Providencia alcalifaciens DSM 30120] Length = 115 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I L R +S ++L L I+ QQV +YE+G+ + L + VL+ PI F Sbjct: 25 VGYEIYLLRKRRLLSGKELANLLNISQQQVSRYERGICNITIDMLIQVLNVLKMPIQDFL 84 Query: 75 D 75 D Sbjct: 85 D 85 >gi|47565513|ref|ZP_00236554.1| transcriptional regulator, putative [Bacillus cereus G9241] gi|47557503|gb|EAL15830.1| transcriptional regulator, putative [Bacillus cereus G9241] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|302330170|gb|ADL20364.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis 1002] Length = 155 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 13/93 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA------SRLQHISEVLESPIS 71 R+R R + G+SQ++L E ++ Q+ E+ N V S + ++ L P + Sbjct: 28 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 87 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + DI ++N D G+ L Sbjct: 88 VLLPAATDIVQDIC--KDNAADL-----GVDLV 113 >gi|302205618|gb|ADL09960.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis C231] gi|308275853|gb|ADO25752.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis I19] Length = 158 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 13/93 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA------SRLQHISEVLESPIS 71 R+R R + G+SQ++L E ++ Q+ E+ N V S + ++ L P + Sbjct: 31 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 90 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + DI ++N D G+ L Sbjct: 91 VLLPAATDIVQDIC--KDNAADL-----GVDLV 116 >gi|300857891|ref|YP_003782874.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685345|gb|ADK28267.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] Length = 145 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 13/93 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA------SRLQHISEVLESPIS 71 R+R R + G+SQ++L E ++ Q+ E+ N V S + ++ L P + Sbjct: 18 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 77 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + DI ++N D G+ L Sbjct: 78 VLLPAATDIVQDIC--KDNAADL-----GVDLV 103 >gi|251779099|ref|ZP_04822019.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083414|gb|EES49304.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 386 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +IR R+ G+S +L +G++ Q + +YE G++ A + E L+ P +FF+ Sbjct: 17 AKIREARISRGLSLSELSTKIGVSSQAISQYELGISTPSALTFIKLVEELDFPSTFFY 74 >gi|169794442|ref|YP_001712235.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] gi|169147369|emb|CAM85230.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] Length = 210 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ V Sbjct: 29 SQSSSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAV 88 Query: 66 LESP 69 L Sbjct: 89 LGVD 92 >gi|218233568|ref|YP_002366514.1| DNA-binding protein [Bacillus cereus B4264] gi|218161525|gb|ACK61517.1| DNA-binding protein [Bacillus cereus B4264] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|153815596|ref|ZP_01968264.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|317501623|ref|ZP_07959815.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088574|ref|ZP_08337485.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847027|gb|EDK23945.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|295100105|emb|CBK89194.1| Predicted transcriptional regulator [Eubacterium cylindroides T2-87] gi|316896966|gb|EFV19045.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407531|gb|EGG87031.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] Length = 223 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I++ R GM Q++L +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQIIRKHRGMKQQELANKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPN-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 ++ I E +MD I Sbjct: 68 -ELLSGEWKYIDHTEPYIMDVI 88 >gi|126650067|ref|ZP_01722300.1| transcriptional regulator (phage-related) protein [Bacillus sp. B14905] gi|126593239|gb|EAZ87201.1| transcriptional regulator (phage-related) protein [Bacillus sp. B14905] Length = 118 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NV +R++ R ++Q + + L I+ YE+G N + +Q ++E + +++ Sbjct: 3 NVSQRLKDLRKEAKLTQADVAKFLNISESAYGYYEQGRNEISIGSVQKLAEKYDVSVAYI 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + EE F + P+ + + D+ VR+ Sbjct: 63 L-CETDEKQPLDKEEAAFQAFANDPELQVFYKELPKSDEETVRR 105 >gi|52143637|ref|YP_083193.1| MerR family transcriptional regulator [Bacillus cereus E33L] gi|196039098|ref|ZP_03106405.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|51977106|gb|AAU18656.1| transcriptional regulator, MerR family [Bacillus cereus E33L] gi|196030243|gb|EDX68843.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|257463340|ref|ZP_05627736.1| putative prophage repressor [Fusobacterium sp. D12] gi|317060917|ref|ZP_07925402.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] gi|313686593|gb|EFS23428.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] Length = 198 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++L R G+SQE+L + L +T + YE G + +L I E L S + FF Sbjct: 5 GKKLKLLRESKGLSQEELSDKLSVTKTTIGNYENGRRALTLEKLAEILEALNSSFNEFFS 64 Query: 76 VSPTVCSDI 84 + DI Sbjct: 65 LKELCTEDI 73 >gi|228909441|ref|ZP_04073266.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] gi|228850218|gb|EEM95047.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] Length = 277 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNE 86 >gi|228940714|ref|ZP_04103277.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973633|ref|ZP_04134215.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980191|ref|ZP_04140505.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228779549|gb|EEM27802.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228786094|gb|EEM34091.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818958|gb|EEM65020.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 277 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNE 86 >gi|229092601|ref|ZP_04223752.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] gi|228690754|gb|EEL44530.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] Length = 277 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNE 86 >gi|163816452|ref|ZP_02207816.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC 27759] gi|158448152|gb|EDP25147.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC 27759] Length = 268 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI R + MSQE+ +G++ Q V K+E +L I + + Sbjct: 2 VQIGSRILEYRKKMNMSQEEFANKIGVSRQAVSKWELDKAYPDLDKLVDICGMFGLSLDE 61 Query: 73 FFDVSPTVCSDISSEENNV 91 + + E V Sbjct: 62 LVNGVEQDEEPVMEAEQRV 80 >gi|307946613|ref|ZP_07661948.1| helix-turn-helix domain-containing protein [Roseibium sp. TrichSKD4] gi|307770277|gb|EFO29503.1| helix-turn-helix domain-containing protein [Roseibium sp. TrichSKD4] Length = 130 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V + +P D +G+RI R G+S +L LG+ +Q +E + +++L Sbjct: 9 VSDTTMPETTDYTLGERICRARDAAGLSTAQLARRLGVKSSTLQGWESDRSEPRSNKLVL 68 Query: 62 ISEVLESPISFFF---DVSPTVCSDISSEENNVMDFIST--PDGLQLNRYFIQIDDVKVR 116 ++ VL ++ SP + ++ NV + L L I+ +K+R Sbjct: 69 LAGVLNVSPTWLLVGRGSSPMEEDVVLTDIENVRLSLDKVHKHALALTEE---IERLKLR 125 >gi|255527984|ref|ZP_05394823.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296186285|ref|ZP_06854689.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255508314|gb|EET84715.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049086|gb|EFG88516.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 184 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK + R G+S +K+ E G++ + + EKG++ + L I+ L S+F Sbjct: 8 IGKNLNNIRRQKGLSLDKVAELTGVSKGMLAQIEKGISNPTVTTLWKIATGLNVSFSYFM 67 Query: 75 DVS 77 + Sbjct: 68 EEE 70 >gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] Length = 187 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR R ++QE+L + +G+ + KYE G+ S+LQ I+ L P+ D+ Sbjct: 5 QIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIEPSVSQLQKIASALGVPMMELLDLE 64 Query: 78 PTVC 81 Sbjct: 65 EGAE 68 >gi|294085273|ref|YP_003552033.1| DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664848|gb|ADE39949.1| DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 208 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R ++ +L GI+ V K E G S LQ +S L ++ FF Sbjct: 24 IGREVRAHRKQQNITVAELAHLTGISIGMVSKIENGNTSPSLSTLQTLSNALGVTLTSFF 83 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + I ++ +G+++ R + Sbjct: 84 RRFEESRTAIHTKAG---------EGVEMERAGTR 109 >gi|229098072|ref|ZP_04229020.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] gi|228685263|gb|EEL39193.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] Length = 277 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKIKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAKQSNE 86 >gi|551457|gb|AAB46931.1| orf1 [Methylobacterium extorquens AM1] Length = 139 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G +IR+ R +S L GI+ + K E G + + I+ L P Sbjct: 15 PLEKALGYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSLASINAIASALNVP 74 Query: 70 ISFFF 74 I+ F Sbjct: 75 ITGLF 79 >gi|309776485|ref|ZP_07671468.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915752|gb|EFP61509.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 303 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 2/80 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R G+SQE+L L ++ Q V K+E ++ I + + + Sbjct: 1 MKFGEKLQKLRKESGISQEELASRLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVSMDY 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 + + E Sbjct: 61 L--LKDEGGESLPQEPGYYA 78 >gi|303234360|ref|ZP_07320999.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302494476|gb|EFL54243.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 143 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ ISE L+ IS + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALIN 63 Query: 76 VSPTVCSDISS 86 P +I Sbjct: 64 HEPNSIFEIMH 74 >gi|258616769|ref|ZP_05714539.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO] gi|293560120|ref|ZP_06676624.1| helix-turn-helix domain protein [Enterococcus faecium E1162] gi|314938184|ref|ZP_07845489.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314943772|ref|ZP_07850507.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951141|ref|ZP_07854199.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994621|ref|ZP_07859881.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995569|ref|ZP_07860663.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|291605987|gb|EFF35417.1| helix-turn-helix domain protein [Enterococcus faecium E1162] gi|313590157|gb|EFR69002.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591026|gb|EFR69871.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596620|gb|EFR75465.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597496|gb|EFR76341.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642531|gb|EFS07111.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 215 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRL 59 V KK P V+ G+RIRL R+ G+S E+LG L + V +E G N +RL Sbjct: 7 VARKKYPEAVET--GQRIRLARIEKGLSMEQLGGKLSPPASKGAVSNWENGYNLPNNTRL 64 Query: 60 QHISEVLESPISFFFDVS 77 + +S+VL+ ++ + S Sbjct: 65 KQLSKVLDVSTTYLLNGS 82 >gi|299822098|ref|ZP_07053984.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299815627|gb|EFI82865.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 133 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R +Q++L E + +T + KYE G +R L ++E L + F Sbjct: 19 MEFGQKVAQLRKKKRFTQKQLAERIDVTPSTISKYEHGTHRPPVFILAKLAEELGTTTDF 78 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + S F I + ++ + +EL Sbjct: 79 LLEDVAGLREKNS------------------VNAFPLIGNPELEKWYLEL 110 >gi|218134936|ref|ZP_03463740.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] gi|217990321|gb|EEC56332.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] Length = 188 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ +R ++Q++ + LG + + +QKYE G + L+ I+ L P Sbjct: 7 IGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVP 61 >gi|254384564|ref|ZP_04999904.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194343449|gb|EDX24415.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 389 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R + M+++ + LG+T V +YE GV++ + ++E+L P++FF Sbjct: 30 RLTQARRLAEMTKKDVATQLGVTPAAVGQYETGVSKPRPDLIPRLAEILGVPVTFFLLGR 89 Query: 78 PTVCSDIS 85 P D S Sbjct: 90 PANRLDAS 97 >gi|325264849|ref|ZP_08131577.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029838|gb|EGB91125.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 538 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R + +SQEK+ E ++ Q VQK+E G + L I+E + + + + Sbjct: 5 KIGKLRKLRKISQEKMAEMFSVSRQAVQKWENGTSVPDLDNLVRIAEYFDVSLDYLINGK 64 Query: 78 P 78 Sbjct: 65 D 65 >gi|255655872|ref|ZP_05401281.1| putative phage repressor [Clostridium difficile QCD-23m63] Length = 169 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 35/57 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|325271879|ref|ZP_08138337.1| putative phage repressor [Pseudomonas sp. TJI-51] gi|324102998|gb|EGC00387.1| putative phage repressor [Pseudomonas sp. TJI-51] Length = 276 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R + G++Q +L E GI + + E+G++R +S L I+++ + + Sbjct: 6 RLKHARRLKGLTQTELAERAGIAQASISEIERGLSR-SSSHLVKIAQICGVDALWLAEGV 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNR 105 ++ + V + I + R Sbjct: 65 GSIPAPTEPGYALVGEEIQKLSAADMVR 92 >gi|319784783|ref|YP_004144259.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170671|gb|ADV14209.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 202 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 35/79 (44%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + D+ VG+R+R R+ +S L G++ + + E+G++ + + ++ Sbjct: 10 KPKDDADVRVGRRVRALRLERNLSLADLAAKAGVSIGALSQIERGMSSLRVKVIWPLAAA 69 Query: 66 LESPISFFFDVSPTVCSDI 84 L+ S +D+ Sbjct: 70 LDIEPSALIADGSDTANDL 88 >gi|229150033|ref|ZP_04278258.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|228633471|gb|EEK90075.1| Transcriptional regulator, MerR [Bacillus cereus m1550] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|114567063|ref|YP_754217.1| XRE family transcriptional regulator [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337998|gb|ABI68846.1| putative transcriptional regulator, XRE family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 359 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 28/76 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI R MSQ L E G+ + +YE G L +S L P + Sbjct: 1 MTISERINKLRKERNMSQALLAERAGLKAPAISQYESGARSPSFESLIKLSSALGVPSDY 60 Query: 73 FFDVSPTVCSDISSEE 88 + SS+ Sbjct: 61 LLLGEEAAPYEESSDS 76 >gi|256372684|ref|YP_003110508.1| transcriptional regulator of molybdate metabolism, XRE family [Acidimicrobium ferrooxidans DSM 10331] gi|256009268|gb|ACU54835.1| transcriptional regulator of molybdate metabolism, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 352 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 R R + G+SQ+++ + LGI+ Q V E G ++ + FD S Sbjct: 6 RRLRRVRGLSQQQVADALGISRQAVAGIESGAFEPSLPVAMALARFFGVSVEELFDTSGA 65 Query: 80 VCSDI 84 + Sbjct: 66 GREEA 70 >gi|260556875|ref|ZP_05829092.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260409481|gb|EEX02782.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 210 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ V Sbjct: 29 SQSSSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAV 88 Query: 66 LESP 69 L Sbjct: 89 LGVD 92 >gi|86137308|ref|ZP_01055885.1| transcriptional regulator, putative [Roseobacter sp. MED193] gi|85825643|gb|EAQ45841.1| transcriptional regulator, putative [Roseobacter sp. MED193] Length = 432 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+ILG+ Q +L GI+ + E R+G L +++VL S Sbjct: 4 DTLTGSRIRERRLILGIRQAELARKAGISASYLNLIEHNRRRIGGKLLVALAQVLGVEPS 63 Query: 72 FFFDVSPTVC-----SDISSEENNVMDFISTPD 99 + + + V + T + Sbjct: 64 MLTEGAEAALIASLREAAADAGPQVAELDRTDE 96 >gi|295101224|emb|CBK98769.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Faecalibacterium prausnitzii L2-6] Length = 272 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 10/97 (10%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D GK I R G++Q +L E L IT + V K+E G AS + + +L Sbjct: 2 NQIDT--GKFIAGCRKEKGLTQAQLAEKLNITDRAVSKWETGKCMPDASIMLELCNILGV 59 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 ++ ++ ++++ E V + + ++L R Sbjct: 60 TVN---ELLSGERIEMNNYEEKVNENL-----IELKR 88 >gi|239502014|ref|ZP_04661324.1| hypothetical protein AbauAB_06835 [Acinetobacter baumannii AB900] Length = 183 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ V Sbjct: 2 SQSSSVLQHVGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAV 61 Query: 66 LESP 69 L Sbjct: 62 LGVD 65 >gi|15963850|ref|NP_384203.1| hypothetical protein SMc02620 [Sinorhizobium meliloti 1021] gi|307309551|ref|ZP_07589206.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307320383|ref|ZP_07599800.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15073025|emb|CAC41484.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] gi|306893949|gb|EFN24718.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306900011|gb|EFN30632.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 243 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G +R R LG++ + I+ + K E G + LQ +S L PI Sbjct: 52 LEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIENGNTSPSLTTLQTLSRALGVPI 111 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + FF S + + +D Sbjct: 112 TAFFRRFEEEHSAVFVKAGEGVD 134 >gi|307704145|ref|ZP_07641070.1| transcriptional regulator [Streptococcus mitis SK597] gi|307622303|gb|EFO01315.1| transcriptional regulator [Streptococcus mitis SK597] Length = 290 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESP 69 +D+ + R++ +R L +SQ++L + GI Q Q+ + E+G G+ L +S+ L+ Sbjct: 1 MDMLLATRLKNKRKELKLSQKELAK--GICEQGQISRMEQGKYSPGSELLFQLSKRLKVS 58 Query: 70 ISFFFDVSP-TVCSDISSEENNVMDFISTPD 99 +++FF+ + + +I + F+ + Sbjct: 59 MNYFFEETEVSSLENIDKFKELSKKFLDERE 89 >gi|291558119|emb|CBL35236.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium siraeum V10Sc8a] Length = 373 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R ++Q +L E +G +FQ + K+E G+ + L ++ E I + Sbjct: 9 RLSDLRKAKHITQGELAEFVGTSFQTISKWENGITMPDITVLPVLAAFFEVSIDELLGIK 68 Query: 78 PTVCSDISSEENNVMDF 94 P SSEE + F Sbjct: 69 PLKGDVYSSEETDSEKF 85 >gi|171779398|ref|ZP_02920362.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282015|gb|EDT47446.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 228 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 50/108 (46%), Gaps = 12/108 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ LG+ Q +L + LGI+ Q +EKG + + L + E+L+ +F ++ Sbjct: 5 EKLKNRRLELGLKQTELAKELGISKQSYFAWEKGTAKPTKANLAKLEELLQVSHGYFSEL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +++N D L+ ++K++ +V+ Sbjct: 65 EIATLYKQLTDQNQEKALTYVQDLLE------------QQRKVVTMVQ 100 >gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07] Length = 169 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 35/57 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|228914405|ref|ZP_04078019.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845250|gb|EEM90287.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|268590867|ref|ZP_06125088.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313652|gb|EFE54105.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 103 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRL 59 M NK + VG R++ R G + +L + G+ + QQ+ +YEKGVNR+G L Sbjct: 1 MSDNK----SISKLVGFRLKQLRNESGFTAFQLTKEAGLKSEQQLYRYEKGVNRIGIDEL 56 Query: 60 QHISEVLESPISFFF 74 + VL + I FF Sbjct: 57 VAVLNVLNARIGDFF 71 >gi|196033431|ref|ZP_03100843.1| DNA-binding protein [Bacillus cereus W] gi|229196038|ref|ZP_04322790.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|195993865|gb|EDX57821.1| DNA-binding protein [Bacillus cereus W] gi|228587420|gb|EEK45486.1| Transcriptional regulator, MerR [Bacillus cereus m1293] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|212633871|ref|YP_002310396.1| transcriptional regulator [Shewanella piezotolerans WP3] gi|212555355|gb|ACJ27809.1| Transcriptional regulator, putative [Shewanella piezotolerans WP3] Length = 108 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 10/78 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGA 56 M + P P+ R++ R LG+SQ++LG LG+ ++ YEKG + Sbjct: 1 MSEKQINPLPL------RLKQARTALGISQKQLGIQLGMEPGTASARMNHYEKGKHTPDY 54 Query: 57 SRLQHISEVLESPISFFF 74 + L+ +++ L P+++FF Sbjct: 55 ATLKAMADELGVPVAYFF 72 >gi|163815728|ref|ZP_02207100.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC 27759] gi|158449033|gb|EDP26028.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC 27759] Length = 298 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 9/108 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R ++Q +L + LG + + V K+E+G+ S + ++LE I+ F Sbjct: 6 IGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGICLPDVSVYMELCKILEISINEFL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + + + + +G + +R+ I+ L Sbjct: 66 AGEDISEDSVREKSDETL-LQVSKEG--------KNKQKFLRRIIVAL 104 >gi|227486494|ref|ZP_03916810.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235542|gb|EEI85557.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 76 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R LG+SQ +LG+ +GI+ + K E G I+ L + FD+ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCMYQIFDL 62 Query: 77 SPTV 80 Sbjct: 63 DGEE 66 >gi|75760227|ref|ZP_00740282.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492280|gb|EAO55441.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + +++ M F Sbjct: 65 NFFLEDTNTEELVVRADQRKKMTF 88 >gi|219668134|ref|YP_002458569.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538394|gb|ACL20133.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 361 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I +R +QE+L + +G++ V K+E G + L I+ L + + F Sbjct: 6 GKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYPDITLLPPIARALNTTVDELFS 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + + S + +G Sbjct: 66 YQNELSDNEVSGFTQKATSLYEAEGFD 92 >gi|323486025|ref|ZP_08091356.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323400592|gb|EGA92959.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 216 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R G++Q +LG+ LG+ Q + +E V+ + L +S++ ++ +D Sbjct: 5 GNIIKQLRKEAGLTQGELGKKLGVVKQTISSWENNVSEPNSETLSELSKLFGVSVAQLYD 64 Score = 38.6 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR MS+++ + +G ++ Y G L I+ L + ++S Sbjct: 89 RIRDLMEEQKMSEDEFAQRVGFHKEEKDAYLYGNKMPSIEDLIKIAGALNVSTDYLLNIS 148 Query: 78 P 78 Sbjct: 149 S 149 >gi|260439179|ref|ZP_05792995.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292808378|gb|EFF67583.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 140 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPIS 71 + G+RIR R G++Q +L + +G++ + V+ YE G + Q ++E + I+ Sbjct: 1 MTFGERIRELRTQKGLTQPQLADSIGVSVRTVKSYELGTSLPKTRETYQKLAEFFDVNIN 60 Query: 72 FFFDVSPTVCSDISS 86 + D + Sbjct: 61 YLLAKDEQFILDAGA 75 >gi|239815284|ref|YP_002944194.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801861|gb|ACS18928.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 135 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI R + Q +L E LG+ Q +Q YE G R+ S L ++ L + Sbjct: 24 VAMGERIAQLRKARSLPQTQLAEALGVAQQTLQAYEAGTRRIPVSALPTVARTLSVTLEE 83 Query: 73 FF 74 F Sbjct: 84 LF 85 >gi|229155408|ref|ZP_04283518.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] gi|228628123|gb|EEK84840.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|213019727|ref|ZP_03335532.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994768|gb|EEB55411.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 303 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L ++ L I Sbjct: 169 IGQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYEMAGALSVNI 224 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 13/131 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + +G++I R++ +Q +L +G+ +++V YE G + L Sbjct: 1 MFVSVRDISSISYKIGQKIEDCRLMQRCTQAELASKIGLAYKEVTNYENGYIPITIEVLY 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+ VL + D+ P + E+ + L L + + ++ K+ + + Sbjct: 61 VIARVLSVNV---VDLLPKPITVREYEDE-------DEEILYLTKIY---ENQKLGKIVP 107 Query: 121 ELVRSIVSSEK 131 L+R + SEK Sbjct: 108 SLIRFVHISEK 118 >gi|196044996|ref|ZP_03112229.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225863689|ref|YP_002749067.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184021|ref|ZP_04311235.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|196023998|gb|EDX62672.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225789365|gb|ACO29582.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228599460|gb|EEK57066.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|153941053|ref|YP_001389709.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936949|gb|ABS42447.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295317797|gb|ADF98174.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 181 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IR R ++ + L E G++ + + E + + + L+ I++ L PI++FF Sbjct: 5 IAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + +E V + + Sbjct: 65 KSPELHKFLVKKQEREVFELEGSS 88 >gi|52842770|ref|YP_096569.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629881|gb|AAU28622.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 225 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI R G++++ L + I ++ +E G G + +++ LE SF Sbjct: 7 IGKRIHEARKAKGLTRQALADLTDDIKPSRINNWEHGTRMPGPEEITQLAQALEVSPSFL 66 Query: 74 FDVSPTVCSDIS 85 +S D Sbjct: 67 MGLSDERDGDFG 78 >gi|134292421|ref|YP_001116157.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135578|gb|ABO56692.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 193 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 12/131 (9%) Query: 1 MVGNKKIPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + P VD +G +IR R L + + GI+ + + E+G+ + Sbjct: 1 MVPPTENPRSVDAPAALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTS 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP----------DGLQLNRYFI 108 L I++ L + +F D S E+ F + +G QL + Sbjct: 61 LAGIAQALGVTVQYFVDTPSEERSVCRGEQLRFFGFADSANLFARLTNVTEGRQLEAILV 120 Query: 109 QIDDVKVRQKI 119 ++ + R ++ Sbjct: 121 RMPPGQKRSEV 131 >gi|322378177|ref|ZP_08052662.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280907|gb|EFX57922.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 151 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ G SQE+L E +GI +E G ++ +L+ I++ + + F Sbjct: 92 RLKELRLQHGFSQEELAEQIGIKQNSYSDWEHGKSKPNYEKLEKIADFFGVSLDWLF 148 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ R G+ Q+++ E L + K+E G ++ +L ++ + + I + Sbjct: 6 EKLKNLRKKRGLIQQEVAELLNVERVAYTKWENGKSKPNYEKLSMLACIFDVSIDYL 62 >gi|237735081|ref|ZP_04565562.1| predicted protein [Mollicutes bacterium D7] gi|229381857|gb|EEO31948.1| predicted protein [Coprobacillus sp. D7] Length = 367 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK++ R G+SQE LG L ++ Q V K+E ++ + IS+ E I+ Sbjct: 1 MSIGKKLLSLRQEKGISQEALGRELNVSRQTVSKWESDLSLPDMKMMITISQFYEISITQ 60 Query: 73 FFDVSPTVCSD 83 D+ +D Sbjct: 61 LLDLDDETEAD 71 >gi|251795933|ref|YP_003010664.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543559|gb|ACT00578.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 231 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + I G+RI+ R GMSQE L G+ + E+G V ++ I+ L+ Sbjct: 2 DIRIEFGQRIKELRARSGMSQEHLAYRAGLDRSYISGVERGERNVSIINIEKIASALQIG 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDF 94 +++ F ++ ++ F Sbjct: 62 VAYLFSGERFSPKQAYQPKDFIVPF 86 >gi|167757519|ref|ZP_02429646.1| hypothetical protein CLORAM_03069 [Clostridium ramosum DSM 1402] gi|167702516|gb|EDS17095.1| hypothetical protein CLORAM_03069 [Clostridium ramosum DSM 1402] Length = 367 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK++ R G+SQE LG L ++ Q V K+E ++ + IS+ E I+ Sbjct: 1 MSIGKKLLSLRQEKGISQEALGRELNVSRQTVSKWESDLSLPDMKMMITISQFYEISITQ 60 Query: 73 FFDVSPTVCSD 83 D+ +D Sbjct: 61 LLDLDDETEAD 71 >gi|321156793|emb|CBW38777.1| Putative helix turn helix DNA binding protein [Streptococcus pneumoniae] Length = 254 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R G+SQ +L LGI+ +E G + + L +SE+L +F Sbjct: 33 KLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEILNVDPRYF 88 >gi|183217354|gb|ACC59273.1| UV resistance protein UmuD [Streptococcus pneumoniae] Length = 227 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R G+SQ +L LGI+ +E G + + L +SE+L +F Sbjct: 6 KLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEILNVDPRYF 61 >gi|261208045|ref|ZP_05922720.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565524|ref|ZP_06445972.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294615155|ref|ZP_06695039.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|314938404|ref|ZP_07845695.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314942329|ref|ZP_07849177.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951463|ref|ZP_07854513.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314993126|ref|ZP_07858512.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996009|ref|ZP_07861087.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|260077629|gb|EEW65345.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162722|gb|EFD10574.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291591975|gb|EFF23600.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|313589763|gb|EFR68608.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313592366|gb|EFR71211.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596420|gb|EFR75265.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598946|gb|EFR77791.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642302|gb|EFS06882.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 111 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR +R LG +Q++L E + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 >gi|256839656|ref|ZP_05545165.1| transcriptional regulator [Parabacteroides sp. D13] gi|256738586|gb|EEU51911.1| transcriptional regulator [Parabacteroides sp. D13] Length = 130 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 10/129 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ QE L + +G++ + YEK + + L+ I++ L+ PI + Sbjct: 12 GANLKRWREWRGIKQEVLADKIGVSQATLSGYEK-KDELEPEVLEKITKALDIPIEAITE 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ +I S D + +Q N+ F ID KI+EL ++ +E++ Sbjct: 71 LNEGALINIYS--GTWQDNATAAGSIQ-NQTFNPID------KIVELYERLLKAEQEKVA 121 Query: 136 IEEECMVEQ 144 + E + ++ Sbjct: 122 MLHEIIKDK 130 >gi|154500025|ref|ZP_02038063.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] gi|150271623|gb|EDM98880.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] Length = 171 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++++ R + G+SQE+L E L ++ Q + K+E G + IS + + + Sbjct: 1 MTFSEKLQRLRKVNGLSQEQLAEKLNVSRQAISKWEMGAI-PDMDNVIKISRFFDCSLDY 59 Query: 73 FFDVSPTVCS 82 + S Sbjct: 60 LMNNEAEETS 69 >gi|126643247|ref|YP_001086231.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|332874254|ref|ZP_08442174.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|126389131|gb|ABO13629.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|323519685|gb|ADX94066.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332737538|gb|EGJ68445.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 183 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ V Sbjct: 2 SQSSSVLQHVGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAV 61 Query: 66 LESP 69 L Sbjct: 62 LGVD 65 >gi|288572782|ref|ZP_06391139.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568523|gb|EFC90080.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 148 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K ++ R G +Q+++ + LGI+ + Q YE G ++ +L ++++ + + Sbjct: 6 KNLKKIRKRSGFTQKQVAKHLGISERAYQHYEAGDRKISPEKLLAMAKLFQVSADYLLGN 65 Query: 77 SPTVCSDISSEENNVMDFIS 96 SP + + E+ ++D +S Sbjct: 66 SPGLLKGL--EDPCLIDILS 83 >gi|75758655|ref|ZP_00738772.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493826|gb|EAO56925.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINVGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + M F Sbjct: 65 NFFLEDTNTEELVVRANQRKKMTF 88 >gi|75761993|ref|ZP_00741910.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490526|gb|EAO53825.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 143 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 31/82 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +++ R G SQE L + ++ Q V K+E G N + +S++ I Sbjct: 1 MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPNIGVIIDLSDLFGITIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + I + D Sbjct: 61 LLRSDGELKEKIIQDSKGSTDL 82 >gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] gi|260938714|gb|EEX94702.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] Length = 185 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 31/73 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GK I L R G+SQ +L E GIT + E G S LQ I V +S Sbjct: 3 NQEIGKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 72 FFFDVSPTVCSDI 84 FF ++ Sbjct: 63 EFFTFEQPQSEEV 75 >gi|254555453|ref|YP_003061870.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254044380|gb|ACT61173.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 180 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR R+ ++QE+LGE ++ + + E + I EVL + Sbjct: 1 MDIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPAD 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF + + Sbjct: 61 FFAAEQPTHKVVYHPAD 77 >gi|300766976|ref|ZP_07076889.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179456|ref|YP_003923584.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495514|gb|EFK30669.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044947|gb|ADN97490.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 180 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR R+ ++QE+LGE ++ + + E + I EVL + Sbjct: 1 MDIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPAD 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF + + Sbjct: 61 FFAAEQPTHKVVYHPAD 77 >gi|125718510|ref|YP_001035643.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498427|gb|ABN45093.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 197 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK+I+ R +SQ+ L E + ++ Q + +E+G L +S+V E + Sbjct: 1 MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60 Query: 73 FFDVSPTVCSDISSEENNV 91 I ++ + Sbjct: 61 LVKGDLETMKQIIHDQEFM 79 >gi|28377241|ref|NP_784133.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270072|emb|CAD62972.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 180 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR R+ ++QE+LGE ++ + + E + I EVL + Sbjct: 1 MDIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPAD 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF + + Sbjct: 61 FFAAEQPTHKVVYHPAD 77 >gi|324009974|gb|EGB79193.1| helix-turn-helix protein [Escherichia coli MS 57-2] Length = 116 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWL 84 >gi|322375624|ref|ZP_08050136.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] gi|321279332|gb|EFX56373.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] Length = 152 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++Q+++ E +G+T + QK+E G +++ +++ P+S+ + Sbjct: 2 NRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQITLKNAAQLADYFGVPLSYLLNQ 61 Query: 77 SPT 79 Sbjct: 62 EEE 64 >gi|229018822|ref|ZP_04175669.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] gi|229025063|ref|ZP_04181491.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228736269|gb|EEL86836.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228742443|gb|EEL92596.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] Length = 277 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSD 83 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNE 86 >gi|300362045|ref|ZP_07058222.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] gi|300354664|gb|EFJ70535.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 115 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +RI+ R+ ++Q++L + L + + +E G N L+ ++ + + + Sbjct: 1 MNIAQRIKDLRLSKHLTQKELAQLLNVKPTTISGWELGRNEPSIDTLKDLAHIFNVSVDY 60 >gi|255103016|ref|ZP_05331993.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI++ R+ ++QE L E + ++ Q V E G + V L I+ L + Sbjct: 6 KFIGQRIKIARIKKKLTQEVLSEKINVSPQHVSNIETGNSSVSLPTLVAIANTLGVSVDE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + T+ S + EN + + + Sbjct: 66 L--LCDTILSSKAVFENELEEVLRD 88 >gi|168178240|ref|ZP_02612904.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182670949|gb|EDT82923.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 381 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I +R G++QE+L +G++ V K+E G + L ++ + Sbjct: 4 LNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDE 63 Query: 73 FFDVSPTVCSD 83 SP + + Sbjct: 64 LLGYSPQLTKE 74 >gi|116873702|ref|YP_850483.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742580|emb|CAK21704.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 115 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 18/110 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L E +G T + KYE +R L ++E+L + F Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAEKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D + S F I + ++ + +EL Sbjct: 61 LLDDVAGLREKNS------------------VNAFPLIGNPELEKWYLEL 92 >gi|331085854|ref|ZP_08334937.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406777|gb|EGG86282.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 179 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++R RM G++QE+L + ++ + + E+ + + L + + L + + Sbjct: 1 MNIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLKD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 FF E DF D LN I + + Sbjct: 61 FFSDDSDEQIVFPKE-----DFFEKTDAELLNTIEWIIPNAQ 97 >gi|325662004|ref|ZP_08150623.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471667|gb|EGC74886.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] Length = 186 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++R RM G++QE+L + ++ + + E+ + + L + + L + + Sbjct: 8 MNIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLKD 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 FF E DF D LN I + + Sbjct: 68 FFSDDSDEQIVFPKE-----DFFEKTDAELLNTIEWIIPNAQ 104 >gi|257064295|ref|YP_003143967.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791948|gb|ACV22618.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 196 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG RIR R +SQE L E + ++ Q V +E G L +S + I Sbjct: 1 MEVGNRIREERDRANLSQEGLAEKIFVSRQTVSNWETGKTYPDVQSLLLMSNLFGVSIDS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 ++ + M ++ Sbjct: 61 LVKGDIVAMNEELDRSASRMKTLA 84 >gi|148378345|ref|YP_001252886.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|168184831|ref|ZP_02619495.1| DNA-binding protein [Clostridium botulinum Bf] gi|237793662|ref|YP_002861214.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148287829|emb|CAL81895.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|182672129|gb|EDT84090.1| DNA-binding protein [Clostridium botulinum Bf] gi|229261583|gb|ACQ52616.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 181 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IR R ++ + L E G++ + + E + + + L+ I++ L PI++FF Sbjct: 5 IAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + +E V + + Sbjct: 65 KSPELHKFLVKKQEREVFELEGSS 88 >gi|317057449|ref|YP_004105916.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449718|gb|ADU23282.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 195 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R+ G++Q++L E + ++ + V K+E G S L ++E+ + ++ Sbjct: 7 GALIRQLRLAAGLTQKQLAEKVNVSDKAVSKWECGNGAPDVSLLTDLAEIFGTDVNTLLS 66 Query: 76 VSPTVCS 82 S + Sbjct: 67 GSKDINE 73 >gi|28898552|ref|NP_798157.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus RIMD 2210633] gi|153836272|ref|ZP_01988939.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|260365009|ref|ZP_05777580.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|260879596|ref|ZP_05891951.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|260894929|ref|ZP_05903425.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|260901062|ref|ZP_05909457.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|28806770|dbj|BAC60041.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149750547|gb|EDM61292.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|308085951|gb|EFO35646.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|308093441|gb|EFO43136.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|308110714|gb|EFO48254.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|308111572|gb|EFO49112.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|328468839|gb|EGF39799.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus 10329] Length = 185 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +GK I R G+SQ +L E GIT + E G S LQ I V Sbjct: 1 MDNHEIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLS 60 Query: 70 ISFFFDVSPTVCSDI 84 +S FF + ++ Sbjct: 61 LSEFFIFEQSSNDEV 75 >gi|330862695|emb|CBX72841.1| hypothetical protein YEW_CE09110 [Yersinia enterocolitica W22703] Length = 178 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 31 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALNVEPWQ 90 Query: 73 FFDVSPTVCSDIS 85 FF + +D Sbjct: 91 FFVSDSSEDNDTE 103 >gi|281427992|ref|YP_003354946.1| hypothetical protein LLKF_p0031 [Lactococcus lactis subsp. lactis KF147] gi|281376619|gb|ADA66104.1| hypothetical protein LLKF_p0031 [Lactococcus lactis subsp. lactis KF147] Length = 201 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G +QE L E IT + +Q+ E G + V L IS L P+S F+ Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENGTD-VSLDTLASISNALLVPVSELFERI 63 Query: 78 PTVCSDIS 85 ++ Sbjct: 64 DEEAKEVE 71 >gi|257870572|ref|ZP_05650225.1| predicted protein [Enterococcus gallinarum EG2] gi|257804736|gb|EEV33558.1| predicted protein [Enterococcus gallinarum EG2] Length = 275 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RI +R L M+Q L + L +++Q + +E+G +L ++ +L+ I Sbjct: 7 RQIGQRIASKRRELNMTQSNLADQLLVSYQAISNWERGNTLPDIEKLPQLATILQLSID 65 >gi|213031120|emb|CAR31457.1| hypothetical protein [Streptococcus pneumoniae] Length = 227 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R G+SQ +L LGI+ +E G + + L +SE+L + +F Sbjct: 6 KLKRKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEILNVDLRYF 61 >gi|195978131|ref|YP_002123375.1| Phage transcriptional repressor [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974836|gb|ACG62362.1| Phage transcriptional repressor [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 232 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 38/86 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R+ +SQE+LG+ LG+ + +EK NR + + + + P +F+ Sbjct: 6 GIQLKTARLSRHISQEQLGQLLGVNKMTISNWEKEKNRPNQKHFEELVSIFQLPAEYFYQ 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 + + N IS + L Sbjct: 66 ENRLLLPYSQLSAFNKEKVISYSESL 91 >gi|85058755|ref|YP_454457.1| hypothetical protein SG0777 [Sodalis glossinidius str. 'morsitans'] gi|84779275|dbj|BAE74052.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 108 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 5/80 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHI 62 P+ +D+ +R++ R G+SQ++LG G + ++ +YEKGV+ QH+ Sbjct: 4 RPSYLDVF-CRRLKQARQAKGLSQKQLGIAAGIDEFVASTRINRYEKGVHEANIQIAQHL 62 Query: 63 SEVLESPISFFFDVSPTVCS 82 + VLE P+++ + + Sbjct: 63 ATVLEVPLAYLYTEDDELAE 82 >gi|301053367|ref|YP_003791578.1| MerR family transcriptional regulator [Bacillus anthracis CI] gi|300375536|gb|ADK04440.1| transcriptional regulator, MerR family [Bacillus cereus biovar anthracis str. CI] Length = 181 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|268591081|ref|ZP_06125302.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313888|gb|EFE54341.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 52 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ E+LG +G++ QQ+ +YE GVN + L +SE+ + PI F Sbjct: 1 MKLTAEELGRYIGVSQQQISRYESGVNHINIDFLSQLSELFKVPIQVF 48 >gi|261208879|ref|ZP_05923316.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289566920|ref|ZP_06447326.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294616443|ref|ZP_06696230.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|260077381|gb|EEW65101.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289161287|gb|EFD09181.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291590694|gb|EFF22416.1| transcriptional regulator, xre family [Enterococcus faecium E1636] Length = 221 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|228475590|ref|ZP_04060308.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|228270372|gb|EEK11807.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +I+ R MSQEKL E LG++ + +E+ ++ + I+++ ++ Sbjct: 5 IGHQIQKLRKSENMSQEKLAEKLGVSRHSISNWEREISNPDLKTILEITKLFNVSLN 61 >gi|227552248|ref|ZP_03982297.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257895169|ref|ZP_05674822.1| helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|293377799|ref|ZP_06623987.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|227178619|gb|EEI59591.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257831734|gb|EEV58155.1| helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|292643580|gb|EFF61702.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 222 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|42780924|ref|NP_978171.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206974833|ref|ZP_03235748.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217959313|ref|YP_002337861.1| DNA-binding protein [Bacillus cereus AH187] gi|222095451|ref|YP_002529511.1| DNA-binding protein [Bacillus cereus Q1] gi|229090798|ref|ZP_04222029.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|229138526|ref|ZP_04267113.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|42736845|gb|AAS40779.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206746852|gb|EDZ58244.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066610|gb|ACJ80860.1| DNA-binding protein [Bacillus cereus AH187] gi|221239509|gb|ACM12219.1| DNA-binding protein [Bacillus cereus Q1] gi|228644934|gb|EEL01179.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|228692549|gb|EEL46277.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|324325844|gb|ADY21104.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 181 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|255655594|ref|ZP_05401003.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296878842|ref|ZP_06902842.1| probable transcriptional regulator [Clostridium difficile NAP07] gi|296430114|gb|EFH15961.1| probable transcriptional regulator [Clostridium difficile NAP07] Length = 403 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 >gi|322378098|ref|ZP_08052584.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321280935|gb|EFX57949.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 290 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ +R LG SQ++L E GI Q Q+ + E+G GA L +SE + + +FF Sbjct: 8 RLKNKRKELGWSQKELAE--GICQQTQISRMEQGKYMPGADLLYKLSEKMGLNMDYFF-- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 +IS E + F + L N+ + + Sbjct: 64 ----SGEISKEFLGLSAFKRLSETLLENQDYASLK 94 >gi|293553401|ref|ZP_06674032.1| transcriptional regulator, xre family [Enterococcus faecium E1039] gi|291602414|gb|EFF32635.1| transcriptional regulator, xre family [Enterococcus faecium E1039] Length = 221 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P + S S E + D Sbjct: 61 -----PPIESATESIEPTLPD 76 >gi|170754718|ref|YP_001779994.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119930|gb|ACA43766.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 181 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IR R ++ + L E G++ + + E + + + L+ I++ L PI++FF Sbjct: 5 IAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + +E V + + Sbjct: 65 KSPELHKFLVKKQEREVFELEGSS 88 >gi|21244014|ref|NP_643596.1| hypothetical protein XAC3288 [Xanthomonas axonopodis pv. citri str. 306] gi|21109631|gb|AAM38132.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 112 Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 13/98 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLG----IT-FQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R+R RM +G +Q +L E +G ++ +V +YE G + + + +++ L+ P+ Sbjct: 12 GTRLRNARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDPATAEALAKALDLPV 71 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST---PDGLQLNR 105 ++F SD+ +E V+ + + L L + Sbjct: 72 AYF-----HATSDLLAEVILVVSQLPAAKQREALNLVK 104 >gi|319646361|ref|ZP_08000591.1| YqaE protein [Bacillus sp. BT1B_CT2] gi|317392111|gb|EFV72908.1| YqaE protein [Bacillus sp. BT1B_CT2] Length = 120 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 6/92 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R G+SQ +L + LG + ++ YE+G L I++ E + Sbjct: 2 LGKRIAALRKEKGLSQYELADRLGFSRGKLANYEQGTREPDYETLIKIADFFEVSTDYLL 61 Query: 75 DVSPTVCSDISSEE------NNVMDFISTPDG 100 D E+ N+ F++ DG Sbjct: 62 RGVDPKVQDKIFEDEAKRILNDPKTFLAARDG 93 >gi|257090579|ref|ZP_05584940.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|294619908|ref|ZP_06699284.1| transcriptional regulator, xre family [Enterococcus faecium E1679] gi|312905109|ref|ZP_07764230.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|256999391|gb|EEU85911.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|291593845|gb|EFF25343.1| transcriptional regulator, xre family [Enterococcus faecium E1679] gi|310631499|gb|EFQ14782.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315163419|gb|EFU07436.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315579063|gb|EFU91254.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 111 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR +R LG +Q++L E + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 >gi|169832243|ref|YP_001718225.1| helix-turn-helix domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169639087|gb|ACA60593.1| helix-turn-helix domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 95 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R G +Q +L L ++ + +YEKG+ L+ ++ VLE+ + + Sbjct: 5 RLRKAREARGWTQSQLAAKLNVSDATISRYEKGLRYPDIETLKRLALVLETSVDYLVGEK 64 Query: 78 PTVCSDISSEEN 89 P + E Sbjct: 65 PDDPDEKLPPEA 76 >gi|167751085|ref|ZP_02423212.1| hypothetical protein EUBSIR_02070 [Eubacterium siraeum DSM 15702] gi|167656003|gb|EDS00133.1| hypothetical protein EUBSIR_02070 [Eubacterium siraeum DSM 15702] Length = 384 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 GKR++ R + GMS +L E L + Q V YE G + ++Q +S++L PI FF Sbjct: 9 GKRLKTARTLKGMSISELAEALDLQRQTVSMYESGKISNPDFPKVQRMSQLLNFPIDFFL 68 Query: 75 DVSPTVCSDISS 86 + S Sbjct: 69 GSDTELVKAAPS 80 >gi|218902948|ref|YP_002450782.1| DNA-binding protein [Bacillus cereus AH820] gi|228926864|ref|ZP_04089931.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121381|ref|ZP_04250611.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|218538383|gb|ACK90781.1| DNA-binding protein [Bacillus cereus AH820] gi|228662070|gb|EEL17680.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|228832805|gb|EEM78375.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 181 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|300718505|ref|YP_003743308.1| XRE family transcriptional regulator [Erwinia billingiae Eb661] gi|299064341|emb|CAX61461.1| XRE family transcriptional regulator [Erwinia billingiae Eb661] Length = 95 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ G SQ+ LG G + ++ +YEKG++ +Q ++E LE P+++ Sbjct: 13 KRLKQARLAKGFSQKSLGIAAGIDEFVASTRINRYEKGIHEADLDTVQRLAEALEVPVAY 72 Query: 73 FFDVSPTVC 81 F Sbjct: 73 LFAEDDEFA 81 >gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916] gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916] Length = 170 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++ R +S L E GI + K E G ++ LQ I++ ++ PI Sbjct: 1 MEISEKLKDLRTFKNLSTYDLAEKTGIPQSTISKLENGNRKIDTDILQKIADAMDVPIDI 60 Query: 73 FFDVSPTVC 81 FF Sbjct: 61 FFQKQSPSE 69 >gi|327184359|gb|AEA32806.1| hypothetical protein LAB52_09520 [Lactobacillus amylovorus GRL 1118] Length = 94 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++I R SQE+L E L ++ Q V K+E G ++ ++ +S + + + Sbjct: 5 QKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDYL 61 >gi|314939175|ref|ZP_07846431.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314941485|ref|ZP_07848373.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314950591|ref|ZP_07853672.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314992445|ref|ZP_07857868.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996689|ref|ZP_07861713.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313589173|gb|EFR68018.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313593020|gb|EFR71865.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313597216|gb|EFR76061.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313599702|gb|EFR78545.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313641522|gb|EFS06102.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 221 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|299768500|ref|YP_003730526.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] gi|298698588|gb|ADI89153.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] Length = 183 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 10 HVGTNIRSLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLGVD 65 >gi|296101665|ref|YP_003611811.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056124|gb|ADF60862.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 256 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R + G++Q+ LG+ +G++ +QK E G ++L ++ L+ + Sbjct: 29 ERLKEARTLRGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKLVELANALKVKPEWLSSG 87 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + E D T + Sbjct: 88 EGAMLLTGQDEAIPPSDQWGTVE 110 >gi|293571244|ref|ZP_06682278.1| transcriptional regulator, xre family [Enterococcus faecium E980] gi|291608651|gb|EFF37939.1| transcriptional regulator, xre family [Enterococcus faecium E980] Length = 221 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|257883805|ref|ZP_05663458.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257819643|gb|EEV46791.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] Length = 221 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|226313439|ref|YP_002773333.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226096387|dbj|BAH44829.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 185 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R G + E + G++ + + E+G+++ L I++ LESPI FF Sbjct: 8 IGHKIRMIRKERGFTLEIMAGKTGLSKGLLSQVERGISQPSLDSLWKITKALESPIIHFF 67 Query: 75 DV 76 + Sbjct: 68 ED 69 >gi|219668902|ref|YP_002459337.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539162|gb|ACL20901.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E + ++ Q + K+E +R+ ++ + + Sbjct: 1 MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60 Query: 73 FF-DVSPTVCSDISSEENNVM 92 D T + E N + Sbjct: 61 LLKDDFETAVYSGADETENYI 81 >gi|254462881|ref|ZP_05076297.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206679470|gb|EDZ43957.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 219 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 9/95 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L G++ + K E G S LQ ++ L P+ Sbjct: 30 LEVAIGREVRSFRKQKEITVAELASMTGLSIGMLSKIENGNTSPSLSTLQTLANALSVPL 89 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + FF + + ++ +G++L R Sbjct: 90 TSFFRRFEEQRTAVHTKAG---------EGVELER 115 >gi|37519836|ref|NP_923213.1| transcriptional regulator [Gloeobacter violaceus PCC 7421] gi|35210827|dbj|BAC88208.1| gll0267 [Gloeobacter violaceus PCC 7421] Length = 366 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 12/114 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+L R G S L + +G ++ Q + KYE+G G+ L +S LE + + Sbjct: 2 LGERIKLARRKAGYSLRNLADRMGGRVSAQAIGKYERGEMVPGSDNLIALSRALEVSVPY 61 Query: 73 FFDVSPTVCSDIS-SEENNVMDFISTP---DGLQLNRYFIQIDDVKVRQKIIEL 122 D + + + + + L+ ++QI+ +I+EL Sbjct: 62 LLDSQGIELTGVDFRAQAGITGAERARVQTEVLEWVERYLQIE------RILEL 109 >gi|23100309|ref|NP_693776.1| hypothetical protein OB2854 [Oceanobacillus iheyensis HTE831] gi|22778541|dbj|BAC14810.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 179 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ G++++ R G SQ+ L E + ++ Q V K+E G N + ++S++ + I Sbjct: 27 NMFFGEKLKKEREKRGWSQDYLAEKVYVSRQSVSKWETGKNYPSIEVIINLSDLFDITID 86 >gi|332652748|ref|ZP_08418493.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517894|gb|EGJ47497.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 413 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI R G+SQE LGE +G++ Q V K+E + +S ++ Sbjct: 1 MTLGTRIAALRRERGLSQEALGELVGVSRQAVSKWESDSALPDVNNCVALSRAFGITLA 59 >gi|304439266|ref|ZP_07399183.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372234|gb|EFM25823.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 185 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 9/95 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQE+L +G++ Q V K+E G + ++ +S+ + Sbjct: 6 RIQYLRKTNGISQEELAVKVGVSRQAVSKWESGQSLPDLEKIITMSDYFGVTTDYILKGI 65 Query: 78 PTVC--SDISSEENNVMDFISTPDGLQLNRYFIQI 110 V SSE + + +I++ F+ I Sbjct: 66 EPVADKEQKSSELKSKILYIAST-------AFVWI 93 >gi|298375353|ref|ZP_06985310.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_19] gi|298267853|gb|EFI09509.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_19] Length = 138 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 10/129 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ QE L + +G++ + YEK + + L+ I++ L+ PI + Sbjct: 20 GANLKRWREWRGIKQEVLADKIGVSQATLSGYEK-KDELEPEVLEKITKALDIPIEAITE 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ +I S D + +Q N+ F ID KI+EL ++ +E++ Sbjct: 79 LNEGALINIYS--GTWQDNATAAGSIQ-NQTFNPID------KIVELYERLLKAEQEKVA 129 Query: 136 IEEECMVEQ 144 + E + ++ Sbjct: 130 MLHEIIKDK 138 >gi|170781903|ref|YP_001710235.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169156471|emb|CAQ01619.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 487 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 3/129 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R G++ + LGE GI Q+ E G S L I+ L+ ++ Sbjct: 18 IGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALDVDVTHLL 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 E + S L L + + + ++ L R + ++ Sbjct: 78 AADAPDARSALEIELDRAQRSSLYGSLGLPAVPASRALPQETL-EALVGLHRELARRARE 136 Query: 133 YRTIEEECM 141 EE Sbjct: 137 SIATPEEAR 145 >gi|89894475|ref|YP_517962.1| hypothetical protein DSY1729 [Desulfitobacterium hafniense Y51] gi|89333923|dbj|BAE83518.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 9/92 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E + ++ Q + K+E +R+ ++ + + Sbjct: 1 MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60 Query: 73 F---------FDVSPTVCSDISSEENNVMDFI 95 + + + I + DF+ Sbjct: 61 LLKDDFETAVYSGADETENYIRVSLQEMNDFL 92 >gi|319936497|ref|ZP_08010913.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808612|gb|EFW05164.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 241 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R G SQE+ LG++ Q V K+E G + RL I+ + E + Sbjct: 5 ENLSSLRKQKGYSQEEFAYLLGVSRQSVSKWESGASIPELERLVEIANIFEVSLDELVKG 64 Query: 77 SPTVCSDISSEENNVMDFISTP 98 V + + + Sbjct: 65 EKAVIQGAVISDEQLHRVLRKS 86 >gi|317488862|ref|ZP_07947392.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] gi|316911936|gb|EFV33515.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] Length = 176 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+++ R GMSQ+++ LG+T Q V +E + ++ + + Sbjct: 2 VGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLCGVSLDDL 60 >gi|289434068|ref|YP_003463940.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170312|emb|CBH26852.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638856|gb|EFS03917.1| DNA-binding protein [Listeria seeligeri FSL S4-171] Length = 180 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|227485416|ref|ZP_03915732.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236546|gb|EEI86561.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 143 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ ISE L+ IS + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALIN 63 Query: 76 VSPTVCSDISS 86 P +I Sbjct: 64 HEPNSIFEIMH 74 >gi|223983505|ref|ZP_03633690.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] gi|223964500|gb|EEF68827.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] Length = 270 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N ++++ RR +G SQE+L L ++ Q V K+E G +L +SE+L + Sbjct: 1 MNFAQKLQKRRKEVGFSQEQLAFELNVSRQAVSKWESGQGYPEVEKLIQLSELLGISLDE 60 Query: 73 FF----DVSPTVCSDISSEENNVMDFISTPDGL 101 + + EE D +P L Sbjct: 61 LMKETREHPSAPIKPLDEEEQEWRDEPHSPITL 93 >gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185] gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185] Length = 263 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 38/77 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR L ++Q+ + E + +T + ++E G++ L ++S+ L + Sbjct: 27 IGDRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGKNLINLSKALNCSPEWLL 86 Query: 75 DVSPTVCSDISSEENNV 91 + +S+ E+N Sbjct: 87 SGKEDNQARVSTVESNA 103 >gi|256849871|ref|ZP_05555302.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256713360|gb|EEU28350.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 71 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKR+ R ++Q +L E +G + + +YE G++ RL I+ L + + Sbjct: 4 KLLGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFLGVKVDW 63 Query: 73 F 73 Sbjct: 64 L 64 >gi|227510766|ref|ZP_03940815.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189768|gb|EEI69835.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 245 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R RR L ++Q++L + L +T Q + ++E ++ L ++SE L P+ Sbjct: 7 LRKRRKELHLTQQQLADKLHVTRQTLSRWENNLSYPNLDTLVNLSEFLAVPLDILLKGD 65 >gi|224541132|ref|ZP_03681671.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] gi|224525941|gb|EEF95046.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 5 IGSKIKAARIGKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVM 92 + + D E NV+ Sbjct: 65 KGEEKMKNYYDYLEESTNVV 84 >gi|189219415|ref|YP_001940056.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] gi|189186273|gb|ACD83458.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] Length = 386 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +RL R+ G+SQ++L +G++ Q + E G+ + ++ VLE + F F SP Sbjct: 15 LRLARIGKGLSQKELAAKIGVSRQTIHAMENGLYVPNTAVALRLARVLEKTVEFLFPYSP 74 Query: 79 T-VCSDISSEEN 89 + +D+ +EN Sbjct: 75 DFIEADVLVDEN 86 >gi|153931215|ref|YP_001382744.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935772|ref|YP_001386295.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168177684|ref|ZP_02612348.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|170758347|ref|YP_001785679.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|226947573|ref|YP_002802664.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|152927259|gb|ABS32759.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931686|gb|ABS37185.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169405336|gb|ACA53747.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|182671289|gb|EDT83263.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226844325|gb|ACO86991.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 181 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IR R ++ + L E G++ + + E + + + L+ I++ L PI++FF Sbjct: 5 IAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + +E V + + Sbjct: 65 KSPELHKFLVKKQEREVFELEGSS 88 >gi|119491284|ref|ZP_01623338.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] gi|119453448|gb|EAW34610.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] Length = 377 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + R++ R LG+SQ+ L + +G++ Q + E G A +++ L + Sbjct: 4 DNELQNRLKQIRTRLGLSQQDLAKVVGVSRQTISGVESGQYAPSARIALRLAKALGCQME 63 Query: 72 FFFDVSPTVCSDISSEENNV 91 F + ++ V Sbjct: 64 DLFWLEEDCLRVEATPAQAV 83 >gi|93007412|ref|YP_579176.1| transcriptional regulator [Streptomyces phage mu1/6] gi|90568490|gb|ABD94169.1| transcriptional regulator [Streptomyces phage mu1/6] Length = 93 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R+ G+SQ L +G+ + + + E GV+ + + I+ L P F Sbjct: 31 VGARIRELRLAAGLSQVDLSHRIGVDHRTISRAENGVHAISIDQAYRIATALGQPSWRLF 90 >gi|268591080|ref|ZP_06125301.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313887|gb|EFE54340.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 104 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I R G+S +L + L + Q V + E+GV R+ +++ I+ L+ I+ Sbjct: 11 VGGNIYKARRAKGLSGSELADLLLCSQQHVSRIERGVIRLHLEQIKQIANSLDIDINCLL 70 Query: 75 DV 76 D Sbjct: 71 DG 72 >gi|229918124|ref|YP_002886770.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469553|gb|ACQ71325.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 179 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+ I+ R+ G++QE+L E ++ + + E+ ++ L + VL S Sbjct: 1 MEVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKE 60 Query: 73 FFDVS 77 FFD Sbjct: 61 FFDEE 65 >gi|266619362|ref|ZP_06112297.1| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288869117|gb|EFD01416.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 355 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF---- 74 IR +R LG++QEK+ LG++ V K+EKG+ S L ++ +L++ ++ Sbjct: 7 IREKRKELGLTQEKVAVYLGVSAPAVNKWEKGITCPDVSVLPALARLLKTDLNTLLCFKE 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +++ + +E + G++L R Sbjct: 67 ELTEQEIAGFCTEVAEAVRADGMSAGIRLVR 97 >gi|291326325|ref|ZP_06124059.2| peptidase, S24 family [Providencia rettgeri DSM 1131] gi|291314825|gb|EFE55278.1| peptidase, S24 family [Providencia rettgeri DSM 1131] Length = 229 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI+ R+ M+Q +L + LG+T Q VQ++E +R+ I+E+L + Sbjct: 6 ERIKQARLAKKMTQAELAQQLGVTPQSVQQWETST-EPRKNRVMKIAEILSVDAEWL 61 >gi|255306892|ref|ZP_05351063.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 169 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 35/57 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|254385485|ref|ZP_05000812.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194344357|gb|EDX25323.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 192 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P + VG+ IR R G+S L G++ + + E+G+ S + I+E L+ Sbjct: 7 PTPEAVEVGRVIRAWRKRRGISMASLAAGSGLSQPFLSQLERGLATPSLSSIYRIAEALD 66 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 F P +S E + I + Sbjct: 67 VTPGTFLR-PPDRPGAVSHESDP--QVIRVSEA 96 >gi|9635515|ref|NP_059606.1| C2 [Enterobacteria phage P22] gi|62362268|ref|YP_224193.1| gp55 [Enterobacteria phage ES18] gi|168240083|ref|ZP_02665015.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451869|ref|YP_002044323.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|59800201|sp|P69202|RPC2_BPP22 RecName: Full=Repressor protein C2 gi|15655|emb|CAA24470.1| unnamed protein product [Enterobacteria phage P22] gi|1143409|emb|CAA60873.1| c2 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|8439602|gb|AAF75024.1| repressor protein [Enterobacteria phage P22] gi|28394307|tpg|DAA01021.1| TPA_inf: prophage repressor [Enterobacteria phage P22] gi|58339111|gb|AAW70526.1| gp55 [Enterobacteria phage ES18] gi|169658888|dbj|BAG12645.1| prophage repressor [Enterobacteria phage P22] gi|194410173|gb|ACF70392.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340367|gb|EDZ27131.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 216 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 Query: 76 VSPTVCSDISSEENNV 91 + + + Sbjct: 67 GDLSQTNVAYHSRHEP 82 >gi|325840453|ref|ZP_08167052.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490320|gb|EGC92649.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 120 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R G +Q +L + ++ Q + +E G L+ +S + + + Sbjct: 4 IGSKIRVERNKHGWTQVELANKMNLSKQTINNWEHGRRIPDIQTLKELSNLFNVSLEYLV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-----DDVKVRQKIIELVR 124 S + + N ++ I G F I +D + + ++ELV+ Sbjct: 64 GESSPAVPE--NHLVNTVNKIKDTFGDDAVVLFKDISDFDEEDFEKLKTLVELVK 116 >gi|325478374|gb|EGC81489.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 143 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ IS+ L+ IS + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISKALDCDISALIN 63 Query: 76 VSPTVCSDISS 86 P +I Sbjct: 64 HEPNSIFEIMH 74 >gi|300214961|gb|ADJ79377.1| DNA-binding protein [Lactobacillus salivarius CECT 5713] Length = 203 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 15/114 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I RR L +Q L + LGIT + V K+E G + AS + + ++LE ++ Sbjct: 6 IGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEIKVNELL 65 Query: 75 DVSPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 V D E N+++ + + ++++ V+ + Sbjct: 66 TGEQIVMKDYKKIAEQNLIELRNQKEKAD--------------RRLLTTVKILA 105 >gi|257791197|ref|YP_003181803.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488068|ref|ZP_07946646.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325831244|ref|ZP_08164536.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475094|gb|ACV55414.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912819|gb|EFV34350.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325486845|gb|EGC89292.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 147 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G + R ++QE L L +T Q V ++E G G + I+ + P++ Sbjct: 1 MAIGDVLVRIRKERNLTQEDLARKLYVTRQAVSRWENGETTPGIDMCKLIAATCDVPVAL 60 Query: 73 FFDVSPTV 80 ++ Sbjct: 61 LLEMPDGA 68 >gi|37528130|ref|NP_931475.1| hypothetical protein plu4299 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787567|emb|CAE16671.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN + G+R+R RM GMSQE + G+ + E+GV + I+ Sbjct: 2 KKPNTIKSIFGQRVRYIRMASGMSQEAFADKCGLDRTYISGIERGVRNPTLEVINVIASG 61 Query: 66 LESPISFFFDVSPTVCS 82 L+ + FD S Sbjct: 62 LQIELKDLFDFDAEKKS 78 >gi|325959832|ref|YP_004291298.1| helix-turn-helix domain-containing protein [Methanobacterium sp. AL-21] gi|325331264|gb|ADZ10326.1| helix-turn-helix domain protein [Methanobacterium sp. AL-21] Length = 190 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++IR R +S E+L E ++ + V+K E S L I++ L+ + F Sbjct: 6 VGEKIRQLRESKNISIEELAENSDLSVEMVEKLESNTVMPSLSPLLKIAKALDVRLGTFL 65 Query: 75 DVSPTVCSDI--SSEENNVMDFISTPDGL-QLNRYFIQIDDVK 114 D +P + S + NVM F L + F + K Sbjct: 66 DDAPQSGPVVVKSGKSENVMRFSGKNTDLKESTLEFYSLASGK 108 >gi|309777338|ref|ZP_07672299.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914879|gb|EFP60658.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 190 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I++ R +SQE L L ++ Q V K+EKG+++ + L ++E+ I + S Sbjct: 3 KIKMLRTEHQLSQESLAALLDVSRQSVSKWEKGLSKPSSENLARLAEIFSVHIQDLMNDS 62 >gi|300173352|ref|YP_003772518.1| helix-turn-helix domain-containing protein [Leuconostoc gasicomitatum LMG 18811] gi|299887731|emb|CBL91699.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG 18811] Length = 184 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG+ ++ R+ M+ + + E ++ + E G L IS L PI Sbjct: 2 IGKRVGENLKKVRIEKNMTLDNVAEMTDVSKPTLHNIETGKTSPSIDNLWKISSGLGIPI 61 Query: 71 SFFF 74 ++FF Sbjct: 62 NYFF 65 >gi|260662801|ref|ZP_05863695.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260552882|gb|EEX25881.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 322 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+ E +G++ Q + K+E G + +++ +SE+ Sbjct: 6 KITNLRKKEGWSQEEFAERMGVSRQSISKWEGGRSTPDMNKILQMSELFGVSTDVLLKDD 65 Query: 78 PTVCSDISSEENNVMDFIST---PDGLQLNRYFI 108 T+ ++++ ++V + P L+L ++ Sbjct: 66 LTLEDEVTTAASSVQNDNGEAIYPVSLELANEYM 99 >gi|229160095|ref|ZP_04288097.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] gi|228623406|gb|EEK80230.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] Length = 149 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKQEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRG 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKKLA 80 >gi|229187999|ref|ZP_04315094.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] gi|228595479|gb|EEK53204.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] Length = 116 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 22/120 (18%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++QE+LG +G++ + +EKG G L+ I++ + Sbjct: 2 IGEKIKELRKNSKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL- 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + +++ EEN V+ + +G + I+ L+ S+ E+K Sbjct: 61 -LGRSEDPELNEEENKVV----SEEG----------------KNIMSLIESLSEDERKKA 99 >gi|268592289|ref|ZP_06126510.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312068|gb|EFE52521.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 106 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 30/56 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG RIR R MS ++L LGI+ Q ++E G R+ L ISE+L+ I Sbjct: 9 VGARIRTLRKDQNMSIQQLSTLLGISQQHQSRHELGEIRIHVDTLYSISEILDLDI 64 >gi|261346291|ref|ZP_05973935.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] gi|282565603|gb|EFB71138.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] Length = 99 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR R+ G+S+++L + ++ QQ+ +YE+G++ + + + L P F Sbjct: 7 IGNFIRNARVSKGLSEKELASLISVSQQQISRYERGISTLSIENILILLNALNIPFDEF 65 >gi|209551825|ref|YP_002283742.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537581|gb|ACI57516.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 189 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ G++ + L G++ + + E+ AS L I L +S FF Sbjct: 9 IGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + ++ + P+ L R Sbjct: 69 AEEGEQAAPLARRQE--QQVWRDPETGYLRRS 98 >gi|160913567|ref|ZP_02076257.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] gi|158434028|gb|EDP12317.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] Length = 227 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 39/80 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I R G++QE+LGE LG+T + + K+E G + S + + ++LE + Sbjct: 5 RKIGIFIATCRKEKGLTQEQLGELLGVTNKSISKWENGKSLPDPSLYKPLCDILEINLIE 64 Query: 73 FFDVSPTVCSDISSEENNVM 92 FD + + + V+ Sbjct: 65 LFDGERIAEDKVVEKADQVI 84 >gi|15671989|ref|NP_266163.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490506|ref|YP_003352486.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722843|gb|AAK04105.1|AE006240_3 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374324|gb|ADA63857.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 107 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ R + +SQE+L + + I+ Q + K+E G + ++ +SE+ + + Sbjct: 1 MEISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTDQIILLSEIFDCSLDT 60 Query: 73 FFDVSPTVCSDISSEENN 90 + E ++ Sbjct: 61 LLKGDKKMEEKAKHEIDD 78 >gi|239624525|ref|ZP_04667556.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239520911|gb|EEQ60777.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 177 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MDIGNKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGD 60 Query: 73 FFDVSPTV 80 FF +P Sbjct: 61 FFTETPDE 68 >gi|91223886|ref|ZP_01259150.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269966489|ref|ZP_06180573.1| putative transcriptional regulator [Vibrio alginolyticus 40B] gi|91191378|gb|EAS77643.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269828946|gb|EEZ83196.1| putative transcriptional regulator [Vibrio alginolyticus 40B] Length = 185 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 30/73 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GK I R G+SQ +L E GIT + E G S LQ I V +S Sbjct: 3 NQEIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 72 FFFDVSPTVCSDI 84 FF ++ Sbjct: 63 EFFTFEQPSNDEV 75 >gi|146302601|ref|YP_001197192.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146157019|gb|ABQ07873.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 133 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 11/134 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G+ I R + GM Q L + +G + Q + E V +L I++ L + Sbjct: 8 RNIGRNISRIRELRGMKQGALADAIGTSQQTISSIETSET-VDFDKLVEIAKALGVTVEA 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIELVRSIVSSE 130 + + + NN D S+ F Q + K+IEL +V +E Sbjct: 67 ---IENFTEESVFNFFNNFYDNSSSQG-----NSFNQGMNATFNPLDKVIELYERLVQAE 118 Query: 131 KKYRTIEEECMVEQ 144 K+ E+ + ++ Sbjct: 119 KEKVEYLEKLLNKE 132 >gi|78043349|ref|YP_359532.1| MerR family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995464|gb|ABB14363.1| transcriptional regulator, MerR family [Carboxydothermus hydrogenoformans Z-2901] Length = 274 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG++++ R G++ E++ + G++ + + E G V + LQ ++ E + + Sbjct: 95 IAVGQKLKALREKKGLTLEEVSQGTGVSVSYLSRIESGQVNVSIATLQKLATFYEKNLLY 154 Query: 73 FFDVSPTVCS 82 FF+ T Sbjct: 155 FFEGMDTKEQ 164 >gi|315302119|ref|ZP_07873074.1| DNA-binding protein [Listeria ivanovii FSL F6-596] gi|313629507|gb|EFR97685.1| DNA-binding protein [Listeria ivanovii FSL F6-596] Length = 180 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|297626284|ref|YP_003688047.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922049|emb|CBL56613.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 511 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+ IR R GM+Q +L E L + + + E G + + I+ LESP+ Sbjct: 10 IGRLIRDARKQRGMTQNQLAEELSTSQSAIHRIESGHQNLSLETINRIAGALESPL 65 >gi|289748952|ref|ZP_06508330.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289689539|gb|EFD56968.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 341 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 47 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 106 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI+ +++ V + +S G L R + + R+ I Sbjct: 107 ASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHPG--LARAVVNL----HRRYRIT 160 Query: 122 LVRSIVSSEKKYR 134 R ++E+++ Sbjct: 161 TARLAAATEERFS 173 >gi|212710521|ref|ZP_03318649.1| hypothetical protein PROVALCAL_01584 [Providencia alcalifaciens DSM 30120] gi|212686941|gb|EEB46469.1| hypothetical protein PROVALCAL_01584 [Providencia alcalifaciens DSM 30120] Length = 97 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + V +G ++ RR ++G++ +L L I+ QQ+ +YE+GVN + L I LE Sbjct: 10 HEVSTYIGSFLKRRRKVVGLTGAELASRLSISQQQISRYERGVNAITIQNLLGILHALE 68 >gi|148266050|ref|YP_001232756.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399550|gb|ABQ28183.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 356 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+ R + GMS + E +G +++ + +YE G L +++VL+ P+ FF Sbjct: 11 GRRLSQARRMRGMSLRAVAEAIGGKVSYNALHRYECGEMMPSDDVLIPVADVLDKPLDFF 70 Query: 74 F 74 F Sbjct: 71 F 71 >gi|306834504|ref|ZP_07467617.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304423306|gb|EFM26459.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 157 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R ++Q++L + + ++ V ++E G ++ + Q +++ + + Sbjct: 2 NRLKELRKEKKLTQKELADKINVSKITVLRWENGERQIKPDKAQQLADFFGVSVGYL 58 >gi|317126928|ref|YP_004093210.1| hypothetical protein Bcell_0190 [Bacillus cellulosilyticus DSM 2522] gi|315471876|gb|ADU28479.1| protein of unknown function DUF955 [Bacillus cellulosilyticus DSM 2522] Length = 387 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R+ ++ +L E L +T Q + KYE G + + + ++L P FF+ Sbjct: 7 GSRLKESRLYNKLTITELAEKLNVTKQMISKYESGKSEPSFEKSLILIDILGYPREFFYT 66 Query: 76 VSPTVCSDISS 86 V + + Sbjct: 67 TDKYVIENEGT 77 >gi|255014004|ref|ZP_05286130.1| putative transcriptional regulator [Bacteroides sp. 2_1_7] Length = 130 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 10/129 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ QE L + +G++ + YEK + + L+ I++ L+ PI + Sbjct: 12 GANLKRWREWRGIKQEVLADKIGVSQATLSGYEK-KDELEPEVLEKITKALDIPIEAITE 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ +I S D + +Q N+ F ID KI+EL ++ +E++ Sbjct: 71 LNEGALINIYS--GTWQDNATAAGSIQ-NQTFNPID------KIVELYERLLKAEQEKVA 121 Query: 136 IEEECMVEQ 144 + E + ++ Sbjct: 122 MLHEIIKDK 130 >gi|238916357|ref|YP_002929874.1| hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] gi|238871717|gb|ACR71427.1| Hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] Length = 217 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 5 IGCKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVM 92 + S D E NV+ Sbjct: 65 KGEQKMKSYYDYLEESTNVV 84 >gi|325962046|ref|YP_004239952.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468133|gb|ADX71818.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 504 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+R+R R G++ + L +G Q+ E G LQH++ L I Sbjct: 34 ISLGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENGKREPKLGLLQHLASALNVSIDQ 93 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 P E + L L Sbjct: 94 LLGAEPPSRRAALEIELERYQRSPLYETLNL 124 >gi|291279912|ref|YP_003496747.1| XRE family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754614|dbj|BAI80991.1| transcriptional regulator, XRE family [Deferribacter desulfuricans SSM1] Length = 178 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LGM+ E + + G T + + E G N + L+ I L IS F+ Sbjct: 4 GAKLREIRKRLGMTLEDVSQKTGFTKSFISQIENGKNSPSIASLKKICFALGITISELFE 63 Query: 76 VSPTVCSDISSEENNVMD-------FISTP 98 V S S ++ V+ F+++ Sbjct: 64 DERNVVSKFSYDDYKVLKNKNLDIYFLASK 93 >gi|260855372|ref|YP_003229263.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|257754021|dbj|BAI25523.1| predicted phage repressor protein [Escherichia coli O26:H11 str. 11368] Length = 135 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RIR RR L +Q L + L I+ V ++E+ + L +S+VL+ + Sbjct: 5 NLTIGERIRYRRKNLKYTQRSLAKVLKISHVSVSQWERDDSEPTGKNLFALSKVLQCSPT 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + EE + +P +L F + + + Sbjct: 65 WILFGDEDKQPSPPIEEPVAL----SPKEHELLELFNALPESE 103 >gi|229061195|ref|ZP_04198545.1| Helix-turn-helix domain protein [Bacillus cereus AH603] gi|228718066|gb|EEL69706.1| Helix-turn-helix domain protein [Bacillus cereus AH603] Length = 262 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 1 MEFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 73 FFDVSPTVCSDISS 86 + ++ Sbjct: 61 LLKETAEQSNEKEH 74 >gi|269797446|ref|YP_003311346.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269094075|gb|ACZ24066.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 123 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G +I+ R+ M+ E++G +G++ Q + KYE + + + +++ ++++ + Sbjct: 6 GDKIKNLRIQNKMTLEEVGNRIGVSKQTLYKYENNIITNIPSDKIEGLAKIFNVSPALIM 65 Query: 75 DVSPTVCS-DISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKI--IELVR 124 T +E +++ T P L I + + + IEL++ Sbjct: 66 GWDDTPKEYYKDAEAAEFTEYLRTRPGARMLFSAAKDISKEDMEKAVEYIELLK 119 >gi|218462689|ref|ZP_03502780.1| probable transcriptional regulator protein, LacI family [Rhizobium etli Kim 5] Length = 189 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ G++ + L G++ + + E+ AS L I L +S FF Sbjct: 9 IGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 S ++ + P+ Sbjct: 69 AEEGQQASPLARRQE--QQVWRDPET 92 >gi|332671330|ref|YP_004454338.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340368|gb|AEE46951.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC 484] Length = 488 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 22/133 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R GM+ E LG +G QV E G L +++ L P++ Sbjct: 20 LGRRIRHLRTGRGMTLEDLGRAIGRAPSQVSMLENGHREPRVGVLAAVADALGVPVAELL 79 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY-----FIQ--IDDVKVRQKI-IELVRSI 126 P ++L R F I +VKV + + + + ++ Sbjct: 80 RPEPPTRRAALE--------------VELERAQRGPLFASLHIPEVKVGRSLPTDALEAL 125 Query: 127 VSSEKKYRTIEEE 139 V + + + + E Sbjct: 126 VRLQAEVQRLLTE 138 >gi|313898421|ref|ZP_07831958.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956803|gb|EFR38434.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 220 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R M+QE+L + LG++ Q + K+EKG L +S + I + Sbjct: 8 EYRKKNMMTQEELADRLGVSRQTITKWEKGTILPSLEYLIDLSRLFGVTIDHLVKDDDCI 67 Query: 81 CSDISS-EENNVMDFISTP 98 C + +F+ T Sbjct: 68 CESSHQVHTTALAEFLVTA 86 >gi|309797052|ref|ZP_07691451.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] gi|308119335|gb|EFO56597.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] Length = 251 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWL 84 >gi|210634400|ref|ZP_03298102.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM 13279] gi|210158825|gb|EEA89796.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM 13279] Length = 206 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ R LG+SQ+ L + ++ Q + +E G L +S V + Sbjct: 1 MELGAHIKEHRKELGLSQDDLAAKIYVSRQTISNWEVGRTYPDVQSLLLLSNVFGVTVDS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + + + +ST Sbjct: 61 LIKGDVETMAQVMDAAVKKYNALST 85 >gi|167041843|gb|ABZ06584.1| putative helix-turn-helix motif protein [uncultured marine microorganism HF4000_097M14] Length = 474 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G +I+ +R LG+SQ + + L I+ + E G ++ L ++ L I Sbjct: 4 IDLQIGYKIKSKRRSLGISQADMAKKLSISPSYLNLIESGKRKISVDLLLKVANELGIEI 63 Query: 71 S 71 S Sbjct: 64 S 64 >gi|304397757|ref|ZP_07379634.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304354929|gb|EFM19299.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 185 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ +R R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 HLSGALRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S + S P+ R + D +R ++ + + + + + Sbjct: 67 IDGSALPPGTATG--------FSQPNAEMSVRSLLPY-DPHLRFDLLAV--ELAAGAQSH 115 Query: 134 RTIEEECMVEQ 144 + E VEQ Sbjct: 116 SSPHEAGCVEQ 126 >gi|282865716|ref|ZP_06274766.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559360|gb|EFB64912.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 199 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G++ L E GI+ + + E G R L I+ E P+ Sbjct: 18 VGPRLRRLRKDRGVTLAALAEATGISVSTLSRLESGGRRPSLELLLPIARAHEVPLDDLV 77 Query: 75 DVSPTVCSDISSEE 88 P + ++ Sbjct: 78 GAPPPGDPRVRAKP 91 >gi|255531717|ref|YP_003092089.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344701|gb|ACU04027.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 104 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DINV +++R R G +Q + L I+ K E G+ + RL+ ++ +L + Sbjct: 3 DINVSQKLRALRKKRGWTQSDMAAQLDISVPAYSKVECGMTELTLGRLRQLAVILGVKVC 62 Query: 72 FFFDVSPTVCSDISSE 87 + D V + E Sbjct: 63 WLLDEDEMVLHQENEE 78 >gi|229011119|ref|ZP_04168312.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|228750002|gb|EEL99834.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 181 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEENNTDDLIVRSHKRKKMIIDNLSYELLSPDFTGNLATAIMTIPPN 112 >gi|229096313|ref|ZP_04227286.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|229102426|ref|ZP_04233134.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|229115267|ref|ZP_04244677.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228668407|gb|EEL23839.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228681073|gb|EEL35242.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228687273|gb|EEL41178.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 181 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FF 73 F Sbjct: 63 SF 64 >gi|251772558|gb|EES53124.1| transcriptional regulator, XRE family [Leptospirillum ferrodiazotrophum] Length = 181 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 3/100 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 V +R+R R +S L + GI+ + + E G + L+ + LE PI+ Sbjct: 2 KQVSERLRELRKNQNLSLRTLAKKAGISASSLSQIESGQVSPSIATLEKVCAALELPITT 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--GLQ-LNRYFIQ 109 FD +P + N ST ++ L R F Sbjct: 62 LFDETPGESDPLVMPARNRRRVYSTTSHATVEPLARGFAA 101 >gi|239814989|ref|YP_002943899.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801566|gb|ACS18633.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R RM MS L + G++ + + E+G+ L+ +++ L P+S FF Sbjct: 6 IGAQVRALRMAAEMSAGSLAKASGVSASMLSRIERGLVSPSVETLERVAQGLHVPVSRFF 65 Query: 75 DVSPTVCSDISS 86 +D S Sbjct: 66 -GDQARRTDFSH 76 >gi|268589266|ref|ZP_06123487.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291315284|gb|EFE55737.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 107 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+I +G +R +R+ ++ E + + L ++ QQV +YE G+N + S + L + Sbjct: 10 VNILIGNYLRQKRIENDLTGEDISKLLHVSQQQVSRYENGINTISFSLILLFLIKLNISV 69 Query: 71 SFFF 74 FF Sbjct: 70 ESFF 73 >gi|212224500|ref|YP_002307736.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212009457|gb|ACJ16839.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 68 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ I F Sbjct: 3 NRVRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGVLIEDIF 60 >gi|160944105|ref|ZP_02091335.1| hypothetical protein FAEPRAM212_01607 [Faecalibacterium prausnitzii M21/2] gi|158444781|gb|EDP21785.1| hypothetical protein FAEPRAM212_01607 [Faecalibacterium prausnitzii M21/2] Length = 163 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ LG++Q++ G +GI V E G +R+ S I + + + Sbjct: 6 RIKELRLALGLNQQEFGARIGIKVSAVSYLESGKSRLTESNAILICREFNVNRDWLLNGA 65 Query: 78 PTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + S + + + + TP + + ++ + RQ ++++ I+ S + Sbjct: 66 GEMFQPNSQDAVDALAEQYDLTPLERDMVENYCRLSKAQ-RQAFWDVMQKIIGSSAQSGG 124 Query: 136 IEE 138 EE Sbjct: 125 AEE 127 >gi|150388718|ref|YP_001318767.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948580|gb|ABR47108.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 101 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RI+ R SQ +L + IT Q + YE GV + L+++++ I + + Sbjct: 3 RIKELRQEKDFSQIQLAKQFDITQQTISNYESGVREPSITTLKNLADFFNVSIDYLLE 60 >gi|328471556|gb|EGF42436.1| DNA-binding protein [Listeria monocytogenes 220] Length = 125 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D + S F I + ++ + +EL Sbjct: 61 LLDDVAGLREKNS------------------VNAFPLIGNPELEKWYLEL 92 >gi|323126522|gb|ADX23819.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 112 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 7/111 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ R G++QE++ + LGI+ +EKG + +L I+ + + Sbjct: 2 LSERLKTLRKEAGLTQEEVAKKLGISRPAYTYWEKGEKKPTPDKLTQIANLFGVSTDYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQ--IDDVKVRQKIIE 121 + D+S E + F +T GL + F + I+ +K R+K+ E Sbjct: 62 NNQVDDEIDLSEVE---LLFRTTSKGLTEEEQVAFKKELIEFMKKRKKMFE 109 >gi|302390193|ref|YP_003826014.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302200821|gb|ADL08391.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 121 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+GKRIR R+ ++QE+LGE + + + + E+G L I++ L + + Sbjct: 8 KNIGKRIRQIRLQRDLTQEELGERANLHYSYIGQVERGDKLPSLKTLSKIAKALNVSLDY 67 Query: 73 FFDVSPT--VCSDISSEENNVMDFISTP 98 + T D + N ++ + T Sbjct: 68 VLEDPATYEAQPDTEAAINELVTMVRTR 95 >gi|326791080|ref|YP_004308901.1| hypothetical protein Clole_1987 [Clostridium lentocellum DSM 5427] gi|326541844|gb|ADZ83703.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 194 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R+ G++Q++L + + I+ + V K+E+G+ S L +S +L+ I Sbjct: 6 VGELIRSLRIECGLTQKQLADAMNISDKTVSKWERGLGCPDISLLPELSILLKVNI 61 >gi|282599859|ref|ZP_05972144.2| MrfJ protein [Providencia rustigianii DSM 4541] gi|282567409|gb|EFB72944.1| MrfJ protein [Providencia rustigianii DSM 4541] Length = 106 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 43/91 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG RIR R MS ++L + LGI+ Q ++E G R+ + ISE+LE I Sbjct: 5 ISRIVGARIRTLRKDRRMSIQQLSKKLGISQQHQSRHELGDMRIHVDTIYSISEILELDI 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + S+I + + + I + L Sbjct: 65 NELISDFTSSNSNIITNDKRDREKILQAEIL 95 >gi|210634365|ref|ZP_03298091.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] gi|210158844|gb|EEA89815.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] Length = 169 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G SQE+L + LG++ Q + K+E R + +S++ F S Sbjct: 47 RLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVVKLSQIYRVSTDFILTGS 106 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 +V S V + S P +L+R + Sbjct: 107 ASVPS--------VCEAPSAPAPRELSREY 128 >gi|210610650|ref|ZP_03288550.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] gi|210152372|gb|EEA83378.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] Length = 124 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 42/81 (51%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + K P+P +++GKR+R+ R+ +QE+ E LG++ K E+G + + +L Sbjct: 10 ICQENKAPDPFYVDMGKRLRIVRIKANYTQEQFAEILGMSTAYYGKIERGEHGLSLKKLV 69 Query: 61 HISEVLESPISFFFDVSPTVC 81 H+ E L I++ + + Sbjct: 70 HVYEKLNIDINYLLTGAKSSS 90 >gi|325453295|gb|ADZ13598.1| phage repressor protein [Cronobacter phage ENT39118] Length = 232 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 5 KKIPNPVDINV--GKRIRL----RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 KK P D V +R+R ++ LG+SQE L E LGI+ V ++ G N + R Sbjct: 2 KKKPLS-DEQVLDAERLRRIYNEKKKDLGLSQEVLAERLGISQSAVAQFLAGKNALNMKR 60 Query: 59 LQHISEVLESPISFF 73 +EVL+ PI F Sbjct: 61 ASEFAEVLQVPIDAF 75 >gi|239946011|ref|ZP_04697948.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239992479|ref|ZP_04713143.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291449463|ref|ZP_06588853.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291352410|gb|EFE79314.1| regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 199 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G++ L GI+ + + E G R + I+ E P+ Sbjct: 18 VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRRPSLELMLPIARAHEVPLDDLV 77 Query: 75 DVSPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQIDDV 113 +P + ++ ++ + P GLQ + I + Sbjct: 78 GAAPVGDPRVRAKPIVQHGRTMLPLTARPGGLQ---AYKLIQEP 118 >gi|160936523|ref|ZP_02083890.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] gi|158440314|gb|EDP18059.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] Length = 177 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MEIGSKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGE 60 Query: 73 FFDVSPTV 80 FF+ +P Sbjct: 61 FFNETPDE 68 >gi|157155496|ref|YP_001461935.1| putative repressor protein [Escherichia coli E24377A] gi|191166562|ref|ZP_03028391.1| putative repressor protein [Escherichia coli B7A] gi|218694199|ref|YP_002401866.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218703832|ref|YP_002411351.1| regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300819564|ref|ZP_07099758.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|300895848|ref|ZP_07114428.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|331676460|ref|ZP_08377157.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] gi|157077526|gb|ABV17234.1| putative repressor protein [Escherichia coli E24377A] gi|190903367|gb|EDV63087.1| putative repressor protein [Escherichia coli B7A] gi|218350931|emb|CAU96632.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218430929|emb|CAR11803.1| Regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300360234|gb|EFJ76104.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|300527890|gb|EFK48952.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|320196986|gb|EFW71605.1| Regulatory protein CI from bacteriophage origin [Escherichia coli WV_060327] gi|320643661|gb|EFX12798.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. 493-89] gi|320648981|gb|EFX17575.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. H 2687] gi|320665037|gb|EFX32141.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H7 str. LSU-61] gi|323153453|gb|EFZ39708.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|325497847|gb|EGC95706.1| putative repressor protein [Escherichia fergusonii ECD227] gi|331075953|gb|EGI47250.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] Length = 251 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWL 84 >gi|66768392|ref|YP_243154.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66573724|gb|AAY49134.1| transcriptional regulator, HTH_3 family [Xanthomonas campestris pv. campestris str. 8004] Length = 412 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ L R GM + +L E +G+T + V YE G ++ L +SE L P +FFF Sbjct: 29 RLTLARKRRGMKKRELAEKIGLTEKSVSNYEAGSQEPESTTLSKLSEALRFPEAFFFGDD 88 Query: 78 PTVCS 82 P V + Sbjct: 89 PEVPT 93 >gi|271502478|ref|YP_003335504.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270346033|gb|ACZ78798.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 110 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R++ G+SQ+ LG G + ++ +YEKGV+ + ++E L P+++ Sbjct: 13 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANIVTAKRLAEALNVPLAY 72 Query: 73 FFDVSPTVC 81 F+ + Sbjct: 73 FYADDDNLA 81 >gi|228912155|ref|ZP_04075870.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228942096|ref|ZP_04104636.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975025|ref|ZP_04135584.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981664|ref|ZP_04141959.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228777776|gb|EEM26048.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228784546|gb|EEM32566.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817430|gb|EEM63515.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228847492|gb|EEM92431.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|324328858|gb|ADY24118.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942746|gb|AEA18642.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 109 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R L M Q +L + +G+ + + YE +++I+ V + Sbjct: 5 IGSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 +S D + + D Sbjct: 65 GLSKHKTFDEETSKKITDD 83 >gi|268590841|ref|ZP_06125062.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313624|gb|EFE54077.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 97 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + +G ++ RR ++G++ +L L I+ QQV +YE+G N + L I + LE Sbjct: 14 VYIGSFLKHRRKVVGLTGSQLASRLKISQQQVSRYERGKNAITIQGLLDILQALE 68 >gi|150016491|ref|YP_001308745.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902956|gb|ABR33789.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 123 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 9/125 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++I++ R + Q++L E GIT + +YE G + ++ VL + Sbjct: 2 KTIGEKIQILREERNLKQKELAELAGITEATLSRYENGKREPKGEIISKLANVLNVSTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF----IQIDDVKVRQKIIELVRSIVS 128 +DI + ++ GL+L + +I++ + I+ ++ Sbjct: 62 LL-----GRNDIITSSVEPTGNLAEQVGLKLIKELEKDGYKIEEKDLPNLILAAKITLAQ 116 Query: 129 SEKKY 133 ++K Sbjct: 117 NKKNQ 121 >gi|260432990|ref|ZP_05786961.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416818|gb|EEX10077.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 431 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 28/60 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+I G+ Q +L +GI+ + E R+G L I+ L S Sbjct: 3 DTLTGSRIRERRLISGLKQAQLARQVGISASYLNLIEHNRRRIGGKLLVDIASALSVEPS 62 >gi|284040164|ref|YP_003390094.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283819457|gb|ADB41295.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 68 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +IR R G++Q++L E LG++ V +YE G + L I+ L Sbjct: 11 QIRDARKAKGLTQKELAEKLGVSESTVNQYESGKQNLTIDTLVKIANALG 60 >gi|332653789|ref|ZP_08419533.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516875|gb|EGJ46480.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 182 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R G+SQE+L L I Q V K+EKG++ + L ++E L++ ++ Sbjct: 2 LSENLKHFRKAKGLSQEELAIKLHIVRQTVSKWEKGLSVPDSGMLIRLAEALDTSVTAL- 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + S+ +S E+ + I+ L+L + R+ Sbjct: 61 -LGEMAGSEPASGESAELKAIAAK--LELLNEQFAARCERQRK 100 >gi|294101955|ref|YP_003553813.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616935|gb|ADE57089.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 235 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKR+ R+ G++Q +L E LG++F + ++EK L +++VLE+ +++ Sbjct: 4 GKRLSELRVKRGLTQLELAEKLGVSFHTILRWEKERRFPDVFHLSILADVLETSVAYLM 62 >gi|257898371|ref|ZP_05678024.1| predicted protein [Enterococcus faecium Com15] gi|257836283|gb|EEV61357.1| predicted protein [Enterococcus faecium Com15] Length = 130 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + G++++ R G+ +L G++ Q+ ++EKG + L+ +S L IS Sbjct: 1 MEFGEKLKKLRTSRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSIS 60 Query: 72 FFFDVSPTVCSDISSEENN 90 +F + SP + I N Sbjct: 61 YFEENSPVNVNTIPKWANE 79 >gi|197287327|ref|YP_002153199.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227356988|ref|ZP_03841360.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194684814|emb|CAR46896.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227162866|gb|EEI47825.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 192 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + P + +G +++ R +S +L GI+ + K E G + L+ I+ Sbjct: 2 NPQSPKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDF 94 L P+ F + + + V D+ Sbjct: 62 IALGFPLGDLFSFTREEYPRLERHKPIVGDY 92 >gi|306520117|ref|ZP_07406464.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 405 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 >gi|126652726|ref|ZP_01724878.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905] gi|126590415|gb|EAZ84534.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905] Length = 134 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 14/98 (14%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES--------- 68 R++ R ++QE+L L T + YE G + L +S++L+ Sbjct: 6 RLKAARKAKKLTQEQLAGKLQTTKGTISNYENGHSTPSNEMLVLLSKILDVTTDYLLGVT 65 Query: 69 ----PISF-FFDVSPTVCSDISSEENNVMDFISTPDGL 101 P+ + +S +++S+ + V++F T + L Sbjct: 66 DNPTPVDYKLAGISDEDYNNLSAYQKEVINFFLTRENL 103 >gi|298207938|ref|YP_003716117.1| hypothetical protein CA2559_06790 [Croceibacter atlanticus HTCC2559] gi|83850579|gb|EAP88447.1| hypothetical protein CA2559_06790 [Croceibacter atlanticus HTCC2559] Length = 187 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G++I+ R G+SQE+L + ++ + +Q+ E N L I L+ I Sbjct: 3 HLGQKIKDARKQKGLSQEELADSAKVSLRTIQRIETNKNEPRGKTLHLICTALQLNI 59 >gi|312109712|ref|YP_003988028.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|311214813|gb|ADP73417.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 148 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ R SQ+K+ E +GI+ Q+ +YE G + ++ + Sbjct: 4 LGKRLKYLREKFNYSQKKVAEAIGISNVQLSRYESGDRNPDPELIAAFADFYGVTTDYI- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + T + E N+ + T + Sbjct: 63 -LGRTDDPQGYAPETNIDNIKDTKE 86 >gi|254975202|ref|ZP_05271674.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092592|ref|ZP_05322070.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255314329|ref|ZP_05355912.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517008|ref|ZP_05384684.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650110|ref|ZP_05397012.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683237|ref|YP_003214522.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686833|ref|YP_003217966.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209400|emb|CBA62866.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212849|emb|CBE04052.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 404 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 >gi|75910246|ref|YP_324542.1| molybdate metabolism transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703971|gb|ABA23647.1| transcriptional regulator of molybdate metabolism, XRE family [Anabaena variabilis ATCC 29413] Length = 376 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DIN+ I+ R LGMSQ+ L G+T Q + E G + +++ L + Sbjct: 3 LDINICNNIKSIRTRLGMSQQDLANIAGVTRQTISGVESGQYAPSVAITLRLAKALGCQV 62 Query: 71 SFFF 74 F Sbjct: 63 ENLF 66 >gi|325845348|ref|ZP_08168648.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325488602|gb|EGC91011.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 194 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L L ++ Q + K+E G + ++EV I Sbjct: 4 MMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDS 63 Query: 73 FFDVS 77 Sbjct: 64 LLRGD 68 >gi|306821038|ref|ZP_07454657.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550979|gb|EFM38951.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 164 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 2/91 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR R G SQEK G+ V E+G + L I+ LE +S F Sbjct: 6 VGQEIRKLRTSKGYSQEKFATVCGLDRTYVAAVERGKRNISIENLYKIANALEITLSELF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 D + I + + + + +L R Sbjct: 66 DFGNPIQKTILLDIKGERFILESKE--ELTR 94 >gi|293374180|ref|ZP_06620511.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292647209|gb|EFF65188.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 191 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L L ++ Q + K+E G + ++EV I Sbjct: 1 MMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDS 60 Query: 73 FFDVS 77 Sbjct: 61 LLRGD 65 >gi|291521732|emb|CBK80025.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 217 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 5 IGCKIKEARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVM 92 + S D E NV+ Sbjct: 65 KGERKMKSYYDYLEESTNVV 84 >gi|229071129|ref|ZP_04204355.1| Helix-turn-helix domain protein [Bacillus cereus F65185] gi|228712069|gb|EEL64018.1| Helix-turn-helix domain protein [Bacillus cereus F65185] Length = 277 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 19 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 78 Query: 76 VSPTVCSD 83 + ++ Sbjct: 79 ETAEQSNE 86 >gi|255598541|ref|XP_002537032.1| conserved hypothetical protein [Ricinus communis] gi|223517747|gb|EEF25351.1| conserved hypothetical protein [Ricinus communis] Length = 318 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 7 IPNPVD---INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 P+P D + + +R+R R +G+SQE + LGI+ V E G +V A L +S Sbjct: 2 TPDPTDEQRLLLAQRLREAREYVGLSQEDVATALGISRPAVTNIEAGTRKVEAVELDKLS 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN-RYFIQIDDVKVRQKI 119 ++ + FF V +S D +L R +D+ + R +I Sbjct: 62 QLYGKTVQFFLTGESNVQDTRVVFLARATHGLSDRDFEELGRRAAEVLDEFRARDRI 118 >gi|150390409|ref|YP_001320458.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950271|gb|ABR48799.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 179 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 35/65 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++IR R++ ++Q++L + +T + K E+ + + L I E L ++ Sbjct: 1 MDIGEKIRRLRILNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDILEALGIDVNK 60 Query: 73 FFDVS 77 FF+ Sbjct: 61 FFNED 65 >gi|172057738|ref|YP_001814198.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990259|gb|ACB61181.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 292 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K +P+ +G I+ R M+Q++L + + + ++ K E G N LQ IS+ Sbjct: 3 KSLPH----MIGNEIKRIRKEKKMTQKELCDGI-CSQAEISKIENGRNSPTIDLLQQISK 57 Query: 65 VLESPISFFFDVSPTVCSDISSEENN 90 L P+S F + SD E +N Sbjct: 58 RLRVPLSLLF--RDQLESDAFREADN 81 >gi|319947404|ref|ZP_08021636.1| DNA-binding protein [Streptococcus australis ATCC 700641] gi|319746344|gb|EFV98605.1| DNA-binding protein [Streptococcus australis ATCC 700641] Length = 197 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK+I+ R +SQ++L E + ++ Q + +E+G L +S+V E + Sbjct: 1 MQVGKQIQHYRKEKNLSQDELAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60 Query: 73 FFDVSPTVCSDISSEENNV 91 I ++ + Sbjct: 61 LVKGDLETMKQIIHDQEFM 79 >gi|294790815|ref|ZP_06755973.1| DNA-binding protein [Scardovia inopinata F0304] gi|294458712|gb|EFG27065.1| DNA-binding protein [Scardovia inopinata F0304] Length = 373 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+ I R G++QE+L E LG++ V K+E G + L I+ + + Sbjct: 4 IQIGRNISQLRREKGITQEELAEYLGVSKPAVSKWESGQSYPDILLLPIIASYFDKTVDD 63 Query: 73 FFDVSPTVCSD 83 P + ++ Sbjct: 64 LLGYQPQMTAE 74 >gi|322418045|ref|YP_004197268.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320124432|gb|ADW11992.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 38/75 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +SQE+L E +G+ +Q+ + E G + L+ I++ L+ + Sbjct: 8 LGMRIREVRKARHLSQERLAEKVGVEPKQISRIEGGKSAPSLDTLEAIAKHLQVQMKDLL 67 Query: 75 DVSPTVCSDISSEEN 89 D V + ++++ Sbjct: 68 DFQHLVPEETAADQA 82 >gi|253987940|ref|YP_003039296.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779390|emb|CAQ82551.1| similar to transcription regulator and to restriction enzyme control elements [Photorhabdus asymbiotica] Length = 78 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN + G+R+R RM GMSQE + G+ + E+GV + I+ Sbjct: 2 KKPNNIKSLFGQRVRYIRMASGMSQEAFADRCGLDRTYISGIERGVRNPTLEVINVIASG 61 Query: 66 LESPISFFFDVSPTV 80 L+ + FD S + Sbjct: 62 LQIELKDLFDFSSSQ 76 >gi|254477298|ref|ZP_05090684.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214031541|gb|EEB72376.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 437 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++LG+ Q +L + I+ + E R+G L ++ VL S Sbjct: 4 DTLTGSRIRERRLMLGLRQAELARQVDISASYLNLIEHNRRRIGGKLLVDLARVLAVEPS 63 Query: 72 FFFDVSPTVCSDISSEENNVM 92 + + E + Sbjct: 64 MLTEGAEVALLSTLREAAAAL 84 >gi|145298596|ref|YP_001141437.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449] gi|142851368|gb|ABO89689.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449] Length = 227 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + RI RR L +S+ L + +G++ V K+E G+N+ L ++ L + + Sbjct: 1 MTISDRIFSRRTALNLSKTALAKAIGVSDVSVGKWESGLNQPKGRYLNDLAAALGVTVDW 60 Query: 73 FFDVSPTVCSDISSEENNV 91 S +NV Sbjct: 61 LLAGSGDGPEQPIPGYHNV 79 >gi|118445204|ref|YP_891173.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196047678|ref|ZP_03114883.1| transcriptional regulator [Bacillus cereus 03BB108] gi|118419765|gb|ABK88183.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196021503|gb|EDX60205.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 116 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 6/89 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R M+QE+LG+ +G++ + +EKG G L+ I++ + Sbjct: 2 IGEKIKELRKNSKMTQEQLGDAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYLL 61 Query: 75 ------DVSPTVCSDISSEENNVMDFIST 97 +++ +S E N++ I + Sbjct: 62 GRSEDPELNEEEDKTVSEEGKNILAIIES 90 >gi|2444013|gb|AAB71491.1| ORF6 [Bacillus pumilus] Length = 211 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++G I +R L +SQE + E LG++ Q + K+E + L ++E+ +S I Sbjct: 2 MSLGSNISNKRKSLKLSQEYVAEQLGVSRQAISKWETNQSEPSMDNLIRLAELFDSDI 59 >gi|312866496|ref|ZP_07726714.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098190|gb|EFQ56416.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 230 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 ++++ RR LG+SQ + LGI+ +E G + +S++L+ S+F Sbjct: 5 EKLKNRRKELGLSQADVARQLGISRPSYFNWENGKTKPNQKNWTKLSKILQVNPSYFLSE 64 Query: 74 FDVSPTVCSDISSEENNVMDF 94 +++ T S + +DF Sbjct: 65 YEIVETYVQLNKSNKKKTVDF 85 >gi|196037154|ref|ZP_03104469.1| transcriptional regulator [Bacillus cereus W] gi|195990258|gb|EDX54311.1| transcriptional regulator [Bacillus cereus W] Length = 116 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 22/120 (18%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++QE+LG +G++ + +EKG G L+ I++ + Sbjct: 2 IGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFNVTTDYL- 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + ++S EEN ++ T +G + I+ L+ S+ E+K Sbjct: 61 -LGRSEDPELSEEENKIV----TEEG----------------KNIMALIESLPEEERKKA 99 >gi|163939634|ref|YP_001644518.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132657|ref|ZP_04261504.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] gi|229166679|ref|ZP_04294429.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|163861831|gb|ABY42890.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228616676|gb|EEK73751.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228650784|gb|EEL06772.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] Length = 181 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEENNTDDLIVRSHKRKKMIIDNLSYELLSPDFTGNLATAIMTIPPN 112 >gi|262046886|ref|ZP_06019846.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|260572868|gb|EEX29428.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 74 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR+ R ++Q +L E +G + + +YE G++ RL I+ L + + Sbjct: 10 GKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFLGVKVDWL 67 >gi|229164709|ref|ZP_04292573.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] gi|228618789|gb|EEK75751.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] Length = 421 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 8/91 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R ++QEKL + + IT + + EKG+ + L+ +S L + FF Sbjct: 2 LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDFF 60 Query: 75 DV-------SPTVCSDISSEENNVMDFISTP 98 DV + DI + EN+ + Sbjct: 61 DVVENKELTLSQIKKDIKAAENHTTANLWDK 91 >gi|222033322|emb|CAP76062.1| hypothetical protein LF82_280 [Escherichia coli LF82] Length = 381 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+ R G++ +L L I+ Q + +EKG+ A L I++VL P FF Sbjct: 18 RRLEEAREAKGLTMAELARVLNISRQAISSFEKGLKSPSADTLSAIAKVLGFPERFF 74 >gi|218134985|ref|ZP_03463789.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] gi|217990370|gb|EEC56381.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] Length = 368 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L E LG++ Q V KYE + ++ +SE+ + Sbjct: 6 KIINLRKKNGWSQEELAERLGVSRQSVSKYEGAQSVPDLDKILKLSEIFGVTTDYLIKDD 65 Query: 78 PTVCS 82 Sbjct: 66 IEEEQ 70 >gi|50122325|ref|YP_051492.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49612851|emb|CAG76301.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 136 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKRI R GM+Q ++ + L ++ Q VQ +E G R+ S L ++ VL + Sbjct: 29 LGKRITALRKEAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAVARVLSVSL 84 >gi|210620995|ref|ZP_03292380.1| hypothetical protein CLOHIR_00323 [Clostridium hiranonis DSM 13275] gi|210154979|gb|EEA85985.1| hypothetical protein CLOHIR_00323 [Clostridium hiranonis DSM 13275] Length = 362 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ + I+ +R L ++QE+L LG++ V K+E G + + L +++++L++ I+ Sbjct: 1 MNINQIIKEKRKALSLTQEQLANQLGVSTPAVSKWESGASYPDITILPNLAKILKTDINT 60 Query: 73 FFDVSPTVCSDISSEE 88 + SD+S EE Sbjct: 61 LL----SFQSDLSDEE 72 >gi|126699176|ref|YP_001088073.1| putative transcriptional regulator [Clostridium difficile 630] gi|115250613|emb|CAJ68437.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 404 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 >gi|90417956|ref|ZP_01225868.1| conserved hypothetical protein with helix turn helix motif [Aurantimonas manganoxydans SI85-9A1] gi|90337628|gb|EAS51279.1| conserved hypothetical protein with helix turn helix motif [Aurantimonas manganoxydans SI85-9A1] Length = 193 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 37/77 (48%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 ++ N V +VG+++R R + +S ++L +G + + K E G + L+ + + Sbjct: 3 QMRNSVPQDVGRKLRHMRNLHNLSLKQLAATVGCSESMLSKVETGRVNPTLTMLRKLVDA 62 Query: 66 LESPISFFFDVSPTVCS 82 L I+F F+ + Sbjct: 63 LGINIAFLFEPQDEDAA 79 >gi|75762322|ref|ZP_00742202.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218897473|ref|YP_002445884.1| DNA-binding protein [Bacillus cereus G9842] gi|228904512|ref|ZP_04068598.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74490185|gb|EAO53521.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544400|gb|ACK96794.1| DNA-binding protein [Bacillus cereus G9842] gi|228855117|gb|EEM99690.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 184 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEE 88 FF D S+EE Sbjct: 63 NFF------LEDTSTEE 73 >gi|322385351|ref|ZP_08058996.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270610|gb|EFX53525.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 227 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R G+SQ +L LGI+ +E G + + L +S++L +F Sbjct: 6 KLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLTKLSQILNVDPRYF 61 >gi|293570008|ref|ZP_06681088.1| transcriptional regulator, putative [Enterococcus faecium E1071] gi|291587380|gb|EFF19264.1| transcriptional regulator, putative [Enterococcus faecium E1071] Length = 154 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R ++QE+L L ++ Q + +E+G ++ L ++ + +S+ D Sbjct: 3 NRLRNLRKKNNLTQEELSLQLKVSRQTISNWERGFSQPDLENLHLLASFFKVTVSYLIDG 62 Query: 77 S 77 Sbjct: 63 D 63 >gi|225869607|ref|YP_002745554.1| phage repressor protein [Streptococcus equi subsp. equi 4047] gi|225699011|emb|CAW92101.1| phage repressor protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS 71 +++G +++ RR+ + +S E+L + LG++ + +YEKG +V L+ IS++L + + Sbjct: 1 MDIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVPTEVLEKISKILNTNPA 60 Query: 72 FFFDVSPT 79 +F S T Sbjct: 61 YFMGWSDT 68 >gi|332522412|ref|ZP_08398664.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332313676|gb|EGJ26661.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 232 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ RM SQ +L L I K+E G + L ++ +L+ P ++F Sbjct: 4 GSRLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVPTTYF 61 >gi|257439204|ref|ZP_05614959.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198337|gb|EEU96621.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 95 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R +SQEKL E LG++ + E+G + L I+E + + Sbjct: 8 IGNRIFTLRTNAKLSQEKLAEKLGVSHHHLGDLERGSSNGSVKILIDIAEYFHVSMDYLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + +E +D + GL Sbjct: 68 LGRDPSRNQFQNELQAAIDHLEKIKGL 94 >gi|229084781|ref|ZP_04217041.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] gi|228698528|gb|EEL51253.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] Length = 181 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G+S ++L IT + + E+G L+ +++ L+ P + Sbjct: 3 NIDIGKKIEKQRKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVP-T 61 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F F + T D+ N I +L Sbjct: 62 FSFLLEETNTDDLIVRSNKRKKMIIDNLSYELL 94 >gi|257792570|ref|YP_003183176.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325832727|ref|ZP_08165490.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257476467|gb|ACV56787.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325485866|gb|EGC88327.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 176 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+++ R GMSQ+++ LG+T Q V +E + ++ + + Sbjct: 2 VGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLYGVSLDDL 60 >gi|224538182|ref|ZP_03678721.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus DSM 14838] gi|224520204|gb|EEF89309.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus DSM 14838] Length = 70 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 7 IPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + N D+ N+GK I RR LG++QE L + + E G + S L I+ Sbjct: 1 MVNETDVLNNIGKIIIQRRKELGITQEDLAYSANVDRTYIGYIENGKQNISISILCKIAN 60 Query: 65 VLESPISFFF 74 VL + FF Sbjct: 61 VLNLNMKDFF 70 >gi|254284054|ref|ZP_04959022.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] gi|219680257|gb|EED36606.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] Length = 219 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++G IR R GM+ +L + ++ + + E+G++ L IS L IS Sbjct: 35 DRSLGLDIRDLRKARGMTLSELSKISELSQGYLSQVERGISVPSIKALHSISRALGVTIS 94 Query: 72 FFF 74 +FF Sbjct: 95 WFF 97 >gi|169823920|ref|YP_001691531.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302379963|ref|ZP_07268442.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|303234408|ref|ZP_07321047.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] gi|167830725|dbj|BAG07641.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302312189|gb|EFK94191.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|302494524|gb|EFL54291.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] Length = 134 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 ++ G +++ R G++Q +L + LG+T + + YE R + I+E I+ Sbjct: 1 MSFGSKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDIN 60 Query: 72 FFFDVSPTVCSDIS 85 F V D + Sbjct: 61 FLLTVEDNFVLDSA 74 >gi|293418613|ref|ZP_06661048.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] gi|291325141|gb|EFE64556.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] Length = 251 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWL 84 >gi|289640577|ref|ZP_06472749.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289509466|gb|EFD30393.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 202 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR RR LG+SQ L + G+ +Q+++YE G + S I++ L ++ Sbjct: 5 IRQRRAELGISQVDLAKAAGVDKRQIRRYEAGEQQPVLSVAVAIAKALGISVA 57 >gi|229059476|ref|ZP_04196859.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228719842|gb|EEL71434.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEENNTDDLIVRSHKRKKMIIDNLSYELLSPDFTGNLATAIMTIPPN 112 >gi|282599559|ref|ZP_05970999.2| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] gi|282568492|gb|EFB74027.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] Length = 233 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++ KR+ R+ GMSQ L E +G++ Q +QK E G R+ I++ + Sbjct: 4 ITMSIAKRLLDARIKAGMSQADLAEKVGVSQQSIQKIEAGQTN-SPRRISDIAKAVNVSA 62 Query: 71 SFF 73 + Sbjct: 63 QWL 65 >gi|16802848|ref|NP_464333.1| hypothetical protein lmo0806 [Listeria monocytogenes EGD-e] gi|224499672|ref|ZP_03668021.1| hypothetical protein LmonF1_08239 [Listeria monocytogenes Finland 1988] gi|224501890|ref|ZP_03670197.1| hypothetical protein LmonFR_05157 [Listeria monocytogenes FSL R2-561] gi|254830206|ref|ZP_05234861.1| hypothetical protein Lmon1_02557 [Listeria monocytogenes 10403S] gi|254899023|ref|ZP_05258947.1| hypothetical protein LmonJ_04380 [Listeria monocytogenes J0161] gi|254911489|ref|ZP_05261501.1| DNA-binding protein [Listeria monocytogenes J2818] gi|254935815|ref|ZP_05267512.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255026637|ref|ZP_05298623.1| hypothetical protein LmonocytFSL_10420 [Listeria monocytogenes FSL J2-003] gi|284801136|ref|YP_003413001.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284994278|ref|YP_003416046.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|16410195|emb|CAC98884.1| lmo0806 [Listeria monocytogenes EGD-e] gi|258608402|gb|EEW21010.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056698|gb|ADB67639.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284059745|gb|ADB70684.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|293589432|gb|EFF97766.1| DNA-binding protein [Listeria monocytogenes J2818] Length = 180 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|332638410|ref|ZP_08417273.1| helix-turn-helix domain-containing protein [Weissella cibaria KACC 11862] Length = 182 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 4/108 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+ R ++ +++ G++ + E+ L IS L PI++FF Sbjct: 6 VGTRLLTLRQQRQLTLQEVSTLTGVSTASLNNIERHTTSPSIDTLWKISSGLAVPINYFF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P + + + S G+ + F I ++ +L Sbjct: 66 ATDPVDFE--LARPADFHNIASEDAGVVVQSVFNSIASNNF--EVFDL 109 >gi|302388655|ref|YP_003824476.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302199283|gb|ADL06853.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 257 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG +I+ R G++Q +L + G++ + + E G L+ I+ L +F Sbjct: 139 HVGYKIKKIRQERGLTQVELAKKAGVSTGLIGQIESGRVEPSLKTLEKIAHALSLSPCYF 198 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + S + + + P R F Sbjct: 199 VTDDDEIASLLRPMNPELKRLLVDPK----VRSF 228 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 ++G++I L R G+S +L E GI+ + + EKG S L+ ++E L Sbjct: 73 RSIGEKIALLRQEKGISLSELAEKAGISATYLCQIEKGNALPSLSTLKALAEAL 126 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R MS ++L ++ + + E+G+ + ++ ++ L + F Sbjct: 4 GKLIRNIRRKRNMSLQELARRADLSVSYLSEIERGIKQPSLETIEKMANALNISKNALFG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 PT + S + + G+ L Sbjct: 64 AEPTENRN-SRSIGEKIALLRQEKGISL 90 >gi|257892810|ref|ZP_05672463.1| predicted protein [Enterococcus faecium 1,231,408] gi|257829189|gb|EEV55796.1| predicted protein [Enterococcus faecium 1,231,408] Length = 163 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R G +QE+L + L IT Q V +E G + + ++++ +S F Sbjct: 21 KKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAKLYGQTLSIFLPD 80 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P + + +QL R+FI + Sbjct: 81 LPEAPMKAEE---------ISSERIQLIRFFICL 105 >gi|257886598|ref|ZP_05666251.1| predicted protein [Enterococcus faecium 1,141,733] gi|257822652|gb|EEV49584.1| predicted protein [Enterococcus faecium 1,141,733] Length = 149 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R G +QE+L + L IT Q V +E G + + ++++ +S F Sbjct: 7 KKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAKLYGQTLSIFLPD 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P + + +QL R+FI + Sbjct: 67 LPEAPMKAEE---------ISSERIQLIRFFICL 91 >gi|238921784|ref|YP_002935298.1| hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] gi|238873456|gb|ACR73164.1| Hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] Length = 177 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Query: 9 NPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N +D +G ++ R ++QE+L E + ++ + V ++E G N S L +++ + Sbjct: 5 NSMDQKKIGSFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGSNMPDISLLAQLADFYD 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 I D + + V+ + + Sbjct: 65 VSIPEIIDGERKSENMNEEVKETVLKLSDYTETI 98 >gi|228918176|ref|ZP_04081680.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841456|gb|EEM86595.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 184 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKNAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + + F Sbjct: 63 NFFLEDTNTEELVVRANQRKKITF 86 >gi|77464338|ref|YP_353842.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126463181|ref|YP_001044295.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221640224|ref|YP_002526486.1| Helix-turn-helix domain-containing protein [Rhodobacter sphaeroides KD131] gi|332559230|ref|ZP_08413552.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides WS8N] gi|77388756|gb|ABA79941.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126104845|gb|ABN77523.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221161005|gb|ACM01985.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides KD131] gi|332276942|gb|EGJ22257.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides WS8N] Length = 132 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G++QE++ LG+ + +Q +E + A+RLQ ++ +L + + Sbjct: 17 GDRLAGAREAAGLTQEEMARRLGVRLKTLQSWEDDLAEPRANRLQMMAGMLNVSLRWLLT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S I T +G + + +R +++ L + + EK+ R Sbjct: 77 GEGEGAEGPSEPA------ILTSEGREALAELAR-----MRTQMLALAQEMGQLEKRMRA 125 Query: 136 IEEE 139 + + Sbjct: 126 LLRK 129 >gi|208742303|ref|YP_002267755.1| transcriptional regulator [Bacillus cereus] Length = 66 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ L MSQ L +G+ + + E G I++VL++PI F Sbjct: 6 RMKEYRVKLNMSQGDLANKVGVRRETIGNLENGKYNPSLKLAYDIAKVLKAPIEVLF 62 >gi|170754766|ref|YP_001780468.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119978|gb|ACA43814.1| HTH domain protein [Clostridium botulinum B1 str. Okra] Length = 381 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I +R G++QE+L +G++ V K+E G++ L ++ + Sbjct: 4 LNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILLLPELATYFNISVDE 63 Query: 73 FFDVSPTVCSD 83 SP + + Sbjct: 64 LLGYSPQLTKE 74 >gi|89897113|ref|YP_520600.1| hypothetical protein DSY4367 [Desulfitobacterium hafniense Y51] gi|89336561|dbj|BAE86156.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 75 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 K I R G++QE+L LG+TFQ V K+E + L +S++L+ I Sbjct: 3 KNICRYRKEKGLTQEELARKLGVTFQAVSKWETAQTLPDITLLPGLSQLLDISID 57 >gi|297587137|ref|ZP_06945782.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297575118|gb|EFH93837.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 134 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 ++ G +++ R G++Q +L + LG+T + + YE R + I+E I+ Sbjct: 1 MSFGAKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDIN 60 Query: 72 FFFDVSPTVCSDIS 85 F V D + Sbjct: 61 FLLTVEDNFVLDSA 74 >gi|210630657|ref|ZP_03296539.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] gi|210160390|gb|EEA91361.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] Length = 152 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ G RIR R G+ Q +L E G+T V+ YE G+ L+ I+ LE + Sbjct: 11 DMADGSRIRELRTRRGLLQRELAEMAGVTESAVRNYELGLRTPRPQHLKAIARALEVDPA 70 Query: 72 FFFDVSPTVCSDISSEENNVMD-FISTPDG 100 D D + + F +TP+ Sbjct: 71 SLVDYGVDTARDALEVLFRLEEGFGATPEA 100 >gi|332971256|gb|EGK10219.1| transcriptional regulator with an addtional conserved domain protein [Desmospora sp. 8437] Length = 386 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G++ ++L E +G++ Q + KYE G Q + L PI FF+ Sbjct: 13 ERLREGREARGLTIQELSERVGVSHQSISKYENGKAVPSGMVFQKLLFTLNLPIHFFYKP 72 Query: 77 SPTVCSD 83 D Sbjct: 73 IHRGIED 79 >gi|329725199|gb|EGG61688.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 179 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF+ S EE + D Sbjct: 61 FFEDSENEKVLYKKEEQVIYD 81 >gi|323494352|ref|ZP_08099464.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] gi|323311515|gb|EGA64667.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] Length = 180 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 12/108 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGK+++ R + G+SQ +L + G+T + + E+ + L+ I + + + Sbjct: 1 MDVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF----------ISTPDGLQLN--RYFI 108 FF + DI + + D + +G QL R F Sbjct: 61 FFTIEIEAKDDIFFTVDQMADLGDGKIKMLLVGAKREGRQLAILREFY 108 >gi|307273982|ref|ZP_07555192.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306509290|gb|EFM78350.1| helix-turn-helix protein [Enterococcus faecalis TX0855] Length = 111 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD--- 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQ 102 V D E + +ST D ++ Sbjct: 67 NVVVDYEEEFLALYRSLSTEDAIR 90 >gi|229189224|ref|ZP_04316248.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] gi|228594268|gb|EEK52063.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] Length = 149 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRG 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|160894107|ref|ZP_02074885.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] gi|156864140|gb|EDO57571.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] Length = 313 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R ++QE+L E G++ + V ++E G+N S L ++E + + Sbjct: 6 IGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVEMRELL 65 Query: 75 DVSPTVCSDISSEEN 89 D + + +E Sbjct: 66 DGERSQTMNKEMKET 80 >gi|148807463|gb|ABR13534.1| phage-related DNA-binding protein [Pseudomonas aeruginosa] Length = 400 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R++ R G++QE L E +G + + K+E G + A I E S+ + Sbjct: 11 ERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSSYPTAPSFHKICEFFGVSESWLLE 69 >gi|327490617|gb|EGF22398.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] gi|328945826|gb|EGG39977.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 205 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + G++ Q V K+E + ++ +S+ + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQFGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGIEPVVQ 70 >gi|291458792|ref|ZP_06598182.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418709|gb|EFE92428.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 163 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RIR RM G++Q++LG LG + ++ +YE G + ++ I+EVL+ Sbjct: 11 MTIGERIRRVRMQRGLTQKELGIALGFPERSADVRIAQYESGTRKPKDDLIRQIAEVLQV 70 Query: 69 PI 70 Sbjct: 71 NP 72 >gi|228953898|ref|ZP_04115937.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805866|gb|EEM52446.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 277 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 19 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 78 Query: 76 VSPTVCSD 83 + ++ Sbjct: 79 ETAEQSNE 86 >gi|261346677|ref|ZP_05974321.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282565383|gb|EFB70918.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 87 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 34/57 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +R R+ G+S ++L + ++ QQ+ +YE G+N++ +L I+ L+ I+ Sbjct: 13 LGNHLRKARVSKGLSGQELAGIIQLSQQQISRYELGINKLSLDKLIEIAIFLDIDIN 69 >gi|193067699|ref|ZP_03048666.1| putative repressor protein [Escherichia coli E110019] gi|192959111|gb|EDV89547.1| putative repressor protein [Escherichia coli E110019] Length = 251 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWL 84 >gi|188584668|ref|YP_001916213.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349355|gb|ACB83625.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 435 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G++I+ R M+QE+L + + EKG+ + L I++ L P+S+F Sbjct: 7 NIGQKIKRARYEKDMTQEELAGK-DFNRSFLSQIEKGLVKPSDRVLSIIADRLNLPLSYF 65 Query: 74 FDVSPTVCSD-----ISSEENNVMDFISTPDGLQLN 104 ++ D ++ N++ + L+L Sbjct: 66 YEPEDPDKDDEQAINALNKARNLIQSNKMDEALELI 101 >gi|126699511|ref|YP_001088408.1| putative phage repressor [Clostridium difficile 630] gi|255101028|ref|ZP_05330005.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|115250948|emb|CAJ68776.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 169 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 35/57 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 2 LSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|315281473|ref|ZP_07870091.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313614873|gb|EFR88399.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 180 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|307277179|ref|ZP_07558283.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506109|gb|EFM75275.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|323481377|gb|ADX80816.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 111 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 >gi|291526522|emb|CBK92109.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 190 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G ++ R G++QE+ E L ++ + V ++E GVN S L I+E I Sbjct: 6 IGSFLKELRKEKGITQEEFAENLNVSGRTVSRWETGVNMPDISLLVDIAEFFNVSI 61 >gi|291167009|gb|EFE29055.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC 35896] Length = 181 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I R GMSQE+L L ++ Q + ++E G + S + +S+V + + Sbjct: 5 EKILALRKQYGMSQEELAGKLNVSRQAISRWEMGTAQPDVSNILQLSKVFCVTTDYLLND 64 Query: 77 SPTVCSDISSEEN 89 S +E Sbjct: 65 ECEQEIHRSEKET 77 >gi|260893514|ref|YP_003239611.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260865655|gb|ACX52761.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 256 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++Q +L G+T + + E+G + L+ I++ + +F Sbjct: 139 LGARLRALREEYGLTQAQLAAMAGVTAGLIGQIEQGKVQPSLKTLEKIAQAMGVSPCYFL 198 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 +S ++ + ++ Sbjct: 199 IEPDASEQVLSMLNPDLRELLAD 221 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PIS 71 INVG+RIRL R G S ++L GI+ + + E+G S L+ ++E L P++ Sbjct: 72 INVGERIRLLRTEKGWSLQELACRAGISASYLSEIERGTVYPSLSTLKRLAEELGVAPVT 131 Query: 72 FF 73 F Sbjct: 132 FL 133 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G+RIR R GMS L I+ + + E+G R ++ +++ L Sbjct: 5 GERIRALREEKGMSLHDLARKAQISLSYLSEIERGTKRPSLRTIEKLAQALNVS 58 >gi|302878682|ref|YP_003847246.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581471|gb|ADL55482.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 124 Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I RR L +Q +L E +G+ + V ++E+G N RL+ ++E L+ P+ Sbjct: 16 LGANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYKLV 75 Query: 75 DVSPTVCSDIS 85 S D S Sbjct: 76 AASSPRHDDQS 86 >gi|317062103|ref|ZP_07926588.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687779|gb|EFS24614.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 184 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 5 IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLI 64 Query: 75 DVSPTVCS 82 + + Sbjct: 65 EDEEETRN 72 >gi|268610635|ref|ZP_06144362.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ I+ R LGM+Q++L E + ++ + V K+E+G S L +++V + I Sbjct: 29 GQLIKRLRTELGMTQKQLAERINVSDKAVSKWERGNGCPDVSLLSALADVFGTDI 83 >gi|297191369|ref|ZP_06908767.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] gi|197720621|gb|EDY64529.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] Length = 509 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|168215895|ref|ZP_02641520.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] gi|182382138|gb|EDT79617.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] Length = 170 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R G++Q++ + + + + +QKYE L+ I+ L+ S Sbjct: 2 LNIGDKIKAIRKERGLTQKEFAKKINKSERMIQKYENSEVEPRIEVLREIATALDISFSE 61 Query: 73 FF---DVSPTVCSDISSEENNVMDFISTPDGL 101 + S + I +N +DFI + L Sbjct: 62 LINPKNSSINISESIDKFKNEYIDFIIDFEQL 93 >gi|92114209|ref|YP_574137.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797299|gb|ABE59438.1| transcriptional regulator, XRE family with cupin sensor protein [Chromohalobacter salexigens DSM 3043] Length = 195 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R + +SQ +L + G+T + E+ S L+ I + + IS FF Sbjct: 6 VGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEFF 65 Query: 75 DVSPTVCSD 83 T + Sbjct: 66 AGEETSPQE 74 >gi|266625424|ref|ZP_06118359.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288862669|gb|EFC94967.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 232 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 10/101 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +++ R G++QE+L E L ++ + V ++E G+N S L ++E + + Sbjct: 6 IGEFLKVLRKEKGLTQEQLAESLLVSGRTVSRWETGMNMPDLSVLIQMAEFYDVEVKEIL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D S+I +E + L + +++ KV Sbjct: 66 DG--ERKSEIMDKE--------LKETLSKVADYNKLEKEKV 96 >gi|257892777|ref|ZP_05672430.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|257829156|gb|EEV55763.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] Length = 221 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNRNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S E + D Sbjct: 61 -----PSIEPTAESIEPTLPD 76 >gi|242237765|ref|YP_002985946.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242129822|gb|ACS84124.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 144 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R G++Q +L + L ++ Q VQ +E G R+ S L ++ L + Sbjct: 29 LGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRRIQISALPAVARQLSVSLDALL 88 Query: 75 DVSPT 79 S T Sbjct: 89 GDSHT 93 >gi|163814737|ref|ZP_02206126.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] gi|158450372|gb|EDP27367.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] Length = 108 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R + ++QE+LG + + + + E G + RL +S L+ + Sbjct: 10 MIIGQRIKYARKSMNLTQEELGRLMCTDGKYISRLESGKSLPSLKRLVQLSRALKCTCDY 69 Query: 73 F---FDVSPTVCSDISSE 87 F DV T D+ E Sbjct: 70 FLWDMDVPETGSEDVDIE 87 >gi|298290472|ref|YP_003692411.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296926983|gb|ADH87792.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 229 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R L ++ L GI+ + K E G+ + LQ IS L PIS F Sbjct: 46 LGQQVRAVRRELELTVSDLASAAGISVGMLSKIENGLISPSLATLQAISSALNVPISTLF 105 >gi|302524530|ref|ZP_07276872.1| predicted protein [Streptomyces sp. AA4] gi|302433425|gb|EFL05241.1| predicted protein [Streptomyces sp. AA4] Length = 178 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R + G++ +L + G++ + + E+GV ++ I+EVL+ P+ F Sbjct: 5 RIREFRTLRGLTVRQLADQAGVSTGLISQVERGVTDPSLETMRRIAEVLDIPLFSLFQEP 64 Query: 78 PTV 80 Sbjct: 65 DEE 67 >gi|229829934|ref|ZP_04456003.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles DSM 14600] gi|229791232|gb|EEP27346.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles DSM 14600] Length = 211 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 19/111 (17%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +IR R+ ++QE+ E LGI+ Q + +E + + +S++ + + Sbjct: 1 MDIGSKIRKSRVDAKLTQEQAAEALGISRQTISNWENEKSYPDIVSVLKMSDLYRVSLDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ S MD++ + VK R+++ L+ Sbjct: 61 LLKGESSMSS--------YMDYLDE-----------STNQVKSRRRLSALI 92 >gi|229526959|ref|ZP_04416356.1| transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] gi|229335571|gb|EEO01051.1| transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] Length = 70 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P + G+++R R G+SQE L + GI + E+G + +++ ISE L Sbjct: 1 MKDPRLVAFGEKVRQTRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEAL 60 Query: 67 ESPISFF 73 +S Sbjct: 61 RVSVSDL 67 >gi|315659344|ref|ZP_07912208.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] gi|315495769|gb|EFU84100.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] Length = 112 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R G++Q++L L T Q V K+E+G A + +++++ + Sbjct: 5 EQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFDITTDELLTG 64 Query: 77 SP-----TVCSDISSEENNVMDFISTP 98 ++ +E N DF+S Sbjct: 65 ENMSNFTKELNETGTEHLNFWDFLSQK 91 >gi|302672228|ref|YP_003832188.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396701|gb|ADL35606.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 277 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I R G++Q ++ E L IT + + K+E G N +S + + +L ++ Sbjct: 7 GKFIAGLRKEKGLTQAQIAEMLNITDRAISKWETGKNMPDSSIMLELCGILGITVNELLS 66 Query: 76 VSPTVCSDISSEENN 90 D ++ N Sbjct: 67 GERIEMKDFENKANE 81 >gi|237739116|ref|ZP_04569597.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423716|gb|EEO38763.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 187 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG I+ R + +++ GI+ + + EKG + ++ I++VLE P+ Sbjct: 7 VNVGMTIKNIRKSKKLLLKEVASKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFK 66 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 FF S + + N IST Sbjct: 67 FFIDSDKEKYEFHLLKKNERKIIST 91 >gi|229012804|ref|ZP_04169973.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] gi|228748485|gb|EEL98341.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] Length = 262 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 1 MEFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 73 FFDVSPTVCSD 83 + ++ Sbjct: 61 LLKETAEQSNE 71 >gi|225868534|ref|YP_002744482.1| phage repressor-like protein [Streptococcus equi subsp. zooepidemicus] gi|225701810|emb|CAW99238.1| putative phage repressor-like protein [Streptococcus equi subsp. zooepidemicus] Length = 232 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R+ +SQE+LGE LG+ + +EK N+ + + ++ + P +F+ Sbjct: 6 GIQLKTARLSRHISQEQLGELLGVNKMTISNWEKEKNKPNQKHFEELIKIFQLPAEYFYQ 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 + + N IS + L Sbjct: 66 ENRLLLPYSQLSAFNKEKVISYSESL 91 >gi|206975303|ref|ZP_03236217.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] gi|206746724|gb|EDZ58117.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] Length = 421 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 8/91 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R ++QEKL + + IT + + EKG+ + L+ +S L + FF Sbjct: 2 LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDFF 60 Query: 75 DV-------SPTVCSDISSEENNVMDFISTP 98 DV + DI + EN+ + Sbjct: 61 DVVENKELTLSQIKKDIKAAENHTTANLWDK 91 >gi|44004506|ref|NP_982174.1| helix-turn-helix/TPR domain-containing protein [Bacillus cereus ATCC 10987] gi|190015190|ref|YP_001966786.1| putative transcriptional regulator [Bacillus cereus] gi|190015455|ref|YP_001967110.1| putative transcriptional regulator [Bacillus cereus] gi|218848240|ref|YP_002455177.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|229113469|ref|ZP_04242919.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296506587|ref|YP_003667821.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] gi|42741572|gb|AAS45017.1| helix-turn-helix/TPR domain protein [Bacillus cereus ATCC 10987] gi|116584866|gb|ABK00981.1| putative transcriptional regulator [Bacillus cereus] gi|116585136|gb|ABK01245.1| putative transcriptional regulator [Bacillus cereus] gi|218540291|gb|ACK92687.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|228669987|gb|EEL25380.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296327174|gb|ADH10101.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] Length = 421 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 8/91 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R ++QEKL + + IT + + EKG+ + L+ +S L + FF Sbjct: 2 LGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDFF 60 Query: 75 DV-------SPTVCSDISSEENNVMDFISTP 98 DV + DI + EN+ + Sbjct: 61 DVVENKELTLSQIKKDIKAAENHTTANLWDK 91 >gi|20808515|ref|NP_623686.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517137|gb|AAM25290.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 144 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R+ GM+QE+ G+ G+T + YE + I+E + + Sbjct: 4 LGERIKQLRLEHGMTQEEFGKLFGVTKYSISLYESNKTSPSDEIKKKIAEYFNVSMDWLM 63 Query: 75 DVSP 78 ++ Sbjct: 64 GLTD 67 >gi|119387639|ref|YP_918673.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119378214|gb|ABL72977.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 184 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG+ IR R GM+ +L +G + + + E+G L IS+ L ISFF Sbjct: 4 HVGEDIRSLRKSRGMTLLELAGDVGRSVGWLSQVERGQTTPSVHDLGQISDRLGVNISFF 63 Query: 74 FDVSPTVCSD 83 F S + Sbjct: 64 FRSSSRAPEE 73 >gi|319948673|ref|ZP_08022795.1| Xre family DNA-binding protein [Dietzia cinnamea P4] gi|319437655|gb|EFV92653.1| Xre family DNA-binding protein [Dietzia cinnamea P4] Length = 479 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 3/101 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q + LG++ + + EK V + L ISEV +FF Sbjct: 2 GARLRRLREENGLTQAAFAQSLGLSSSYLNQLEKDTRPVTSRVLVKISEVYGVDSTFFAS 61 Query: 76 VSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDV 113 S T +E + + + + + L R + Sbjct: 62 DSDTRLIAAVTEALTDTQLSTEVPADEVVDLVRAHPALARA 102 >gi|313900820|ref|ZP_07834310.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312954240|gb|EFR35918.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 162 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R GM+Q++L + +G++ Q V K+E ++ L +S+ + F Sbjct: 4 LGTKISELRKARGMTQDELADKMGVSPQAVSKWENDLSMPDLPVLIELSDFFHISLDDF 62 >gi|310829202|ref|YP_003961559.1| XRE family transcriptional regulator [Eubacterium limosum KIST612] gi|308740936|gb|ADO38596.1| XRE family transcriptional regulator [Eubacterium limosum KIST612] Length = 123 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 49/115 (42%), Gaps = 8/115 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R++ R+ ++QEK + + KYEK N L I++ + + + Sbjct: 7 GSRLKALRLSKNLTQEKFANIFYLNKSSISKYEKDKNLPENQLLIKIADFFDVSVDYLLC 66 Query: 75 -----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + P+ +S EE + ++ + + + + D +++++++ +R Sbjct: 67 RTSQQKLLPSNPKPMSGEE-FLSSYVFSEEETEAFAAYFSFPDD-LKKEVLDYIR 119 >gi|331672656|ref|ZP_08373445.1| transcriptional activator-regulatory protein [Escherichia coli TA280] gi|331070299|gb|EGI41665.1| transcriptional activator-regulatory protein [Escherichia coli TA280] Length = 251 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 27 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWL 84 >gi|257467814|ref|ZP_05631910.1| MerR family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 183 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 4 IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLI 63 Query: 75 DVSPTVCS 82 + + Sbjct: 64 EDEEETRN 71 >gi|83313343|ref|YP_423607.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948184|dbj|BAE53048.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 476 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 7/138 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK + +G ++R R +SQ L L ++ + + E + L Sbjct: 1 MAMNKK------LFLGYKLRRLREGKKLSQAALAVLLEVSPSYLNQIENNQRPLTVPVLL 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I++VL+ ++ + + E N F S GL R ++ ++++ Sbjct: 55 RIAKVLDVDLATLVEDEESRLVADLREALNDPVFGSGSIGLSELRNAAS-ASPELAKRVL 113 Query: 121 ELVRSIVSSEKKYRTIEE 138 L ++ +++ +++ E Sbjct: 114 TLYQTFRQLDERMQSLTE 131 >gi|16799870|ref|NP_470138.1| hypothetical protein lin0796 [Listeria innocua Clip11262] gi|16413247|emb|CAC96028.1| lin0796 [Listeria innocua Clip11262] gi|313619917|gb|EFR91474.1| DNA-binding protein [Listeria innocua FSL S4-378] Length = 180 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 37/75 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|325262674|ref|ZP_08129410.1| DNA-binding protein [Clostridium sp. D5] gi|324031768|gb|EGB93047.1| DNA-binding protein [Clostridium sp. D5] Length = 545 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+ I RR +G++Q++L E LG+T + V K+E G S L+ ++ VLE + Sbjct: 6 GQFIARRRKAIGLTQKELAEKLGVTNKAVSKWETGGGMPDVSVLETLAGVLEVSVD 61 >gi|260428966|ref|ZP_05782943.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260419589|gb|EEX12842.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 205 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G R+R R G+S ++L ++ + + E+ ++ L ++ + P+S Sbjct: 22 DSTLGLRLRALRKSHGLSLKELSARASLSVGSLSQIERDLSSPSVRTLNKLATSFDVPLS 81 Query: 72 FFFDVSPTVCSD 83 +FF D Sbjct: 82 YFFADPAADEVD 93 >gi|254853777|ref|ZP_05243125.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300765112|ref|ZP_07075099.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] gi|258607157|gb|EEW19765.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300514237|gb|EFK41297.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] Length = 180 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|160898595|ref|YP_001564177.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364179|gb|ABX35792.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 102 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 24/117 (20%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D G R++ R+ +SQ+ LG G + ++ +YE G ++ ++ ++EVL+ Sbjct: 5 DEQWGARLKQARLAADLSQKMLGIEAGIDPFVASARINRYELGKHKPDLLTVRKLAEVLK 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P++FF+ + +++ L R + +VR+++ ++++ Sbjct: 65 VPMAFFYSDTDDEVAEL------------------LLR--YGVSGEEVRKRVRDVLK 101 >gi|254460982|ref|ZP_05074398.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodobacterales bacterium HTCC2083] gi|206677571|gb|EDZ42058.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodobacteraceae bacterium HTCC2083] Length = 205 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ +G IR R G++ L + L + + + E G R+ + LQ I Sbjct: 2 TKNDPSSTAKRLGAEIREVRKARGLTLNDLSDQLSCSTAYLSRIELGSARISGALLQEIG 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM 92 + L +F +P + E ++++ Sbjct: 62 KALHVDPEWF---APVQSGEGPLERHHIV 87 >gi|197284836|ref|YP_002150708.1| phage repressor [Proteus mirabilis HI4320] gi|194682323|emb|CAR42114.1| putative phage repressor [Proteus mirabilis HI4320] Length = 215 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ RI+ RR+ L ++QE L + L ++ + K+E V LQ +++VLE + Sbjct: 1 MHI--RIKERRLQLSLTQEALAKMLSVSRVSITKWETRVTEPDGENLQALAKVLEVSPEW 58 Query: 73 FFDVSPTVCSDI 84 + +D Sbjct: 59 LLYGGNSSEADA 70 >gi|190570720|ref|YP_001975078.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356992|emb|CAQ54381.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 279 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 23/121 (19%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L ++ L I Sbjct: 169 IGQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYEMAGALSVNIKVLL 228 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 T + + NR ID+ + ++ LV+S+ K + Sbjct: 229 PE--------------------TRESKEENRLLSLIDEYREQES---LVKSLSEDMKSGK 265 Query: 135 T 135 Sbjct: 266 E 266 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 13/131 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + +G++I R++ +Q +L +G+ +++V YE G + L Sbjct: 1 MFVSVRDISSISYKIGQKIEDCRLMQRCTQAELASKIGLAYKEVTNYENGYIPITIEVLY 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+ VL + D+ P + E+ + L L + + ++ K+ + + Sbjct: 61 VIARVLSVNV---VDLLPKPITVREYEDE-------DEEILYLTKIY---ENQKLGKIVP 107 Query: 121 ELVRSIVSSEK 131 L+R + SEK Sbjct: 108 SLIRFVHISEK 118 >gi|120404243|ref|YP_954072.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119957061|gb|ABM14066.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 104 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG IR R+ G++QE L G+T + E G + RL I++ L P S Sbjct: 21 RTVGDNIRRLRISCGLTQEALALQSGVTRNVLLAVEHGRRGLLYERLFDIADALGVPASR 80 Query: 73 FFDVSPTVCSDISSEEN 89 D + + ++ Sbjct: 81 LLDSHNESGEGLRTADS 97 >gi|118462695|ref|YP_881469.1| prophage regulatory ptotein [Mycobacterium avium 104] gi|118163982|gb|ABK64879.1| putative prophage regulatory ptotein [Mycobacterium avium 104] Length = 194 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 25/57 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 D VG IR R G+ Q LGE LG+ Q + K E G V + I+ L Sbjct: 4 DQEVGANIRRFRQARGLPQAALGEPLGLNQQAIAKIENGTRAVKLAEAAVIARTLGV 60 >gi|326804313|ref|YP_004322131.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651167|gb|AEA01350.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 328 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L + L ++ Q + K+E+ ++ ++ + + Sbjct: 6 KILHLRKQAGWSQEELAQQLNVSRQSISKWERAEAIPDLEKILDLARIFGVTTDYLIKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + +E + + ++ FI Sbjct: 66 LDQVDYSAGDEGPLEAGLP-KLSIEEANAFIA 96 >gi|325695606|gb|EGD37506.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 113 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R+++ R + ++Q ++ E L I+ Q +E+GV + L I+++L + + Sbjct: 1 MKFGERLKILRKQVKLTQSQIAEKLDISQQAYASWERGVKKPTQENLIKIAQILNVTVDY 60 Query: 73 FFDVSPTVCSDISSEE 88 S + + E Sbjct: 61 LVGNSEEQSDEFDNIE 76 >gi|296134047|ref|YP_003641294.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296032625|gb|ADG83393.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 255 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RIR R G+S G G++F + + E+G L+ I+ L P+S Sbjct: 70 LNIGDRIRALREEKGLSLVDFGNLTGLSFTYLSELERGTTVPAVGTLKKIAACLGVPVSL 129 Query: 73 FFD 75 F + Sbjct: 130 FIE 132 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 43/101 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++++ R + G++Q++L GI+ V + E G ++ IS+VL + + Sbjct: 140 IAEKLQYARKMKGLTQKELAVRAGISPGLVGQIEMGKVNASLKTIEKISQVLGVSVCYLI 199 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 V + I + + + L ++++ K+ Sbjct: 200 LDREEVEAMIGGLSPELRNLLMDKKVQLLLGSICRMEEDKL 240 >gi|94994722|ref|YP_602820.1| Cro/CI family transcriptional regulator [Streptococcus phage 10750.3] gi|94548230|gb|ABF38276.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10750.3] Length = 271 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 12/131 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR R M+Q +L E LG+ T+ V K+EK N L+ ++E+ + Sbjct: 23 QLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKDLKKLAEIFNVTSDY 82 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ + I+ + + ++ + Q++ + ++K++ + + K Sbjct: 83 LLGLTDSKLGKITIQ----------NEQPEIVSIYNQLEQPR-QEKVLNFANEQLEEQNK 131 Query: 133 YRTIEEECMVE 143 +I ++ E Sbjct: 132 TVSIFDKKSEE 142 >gi|9633025|ref|NP_050133.1| hypothetical protein phiadhp25 [Lactobacillus phage phiadh] gi|5730282|emb|CAB52503.1| hypothetical protein [Lactobacillus phage phiadh] Length = 112 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R+ +SQ +LG + + Q + YE G Q +++ + + Sbjct: 2 NRIKNLRIANNISQAELGNKVNASNQAISAYESGFRNPKPETWQALADFFNVSVPYL--Q 59 Query: 77 SPTVCSDISSEENNVMDFIST 97 D+S E ++ D I Sbjct: 60 GKIFKEDLSPELQDMFDDIQD 80 >gi|119854987|ref|YP_935592.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|145226009|ref|YP_001136663.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|119697705|gb|ABL94777.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|145218472|gb|ABP47875.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] Length = 92 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG RIR R+ G+SQE L G+ Q+ + E G V R+ I+E L ++ Sbjct: 23 VGSRIRALRLERGLSQESLALESGVARNQLIQMEHGRRGVLIERVYDIAEALGVSVN 79 >gi|325687047|gb|EGD29070.1| DNA-binding protein [Streptococcus sanguinis SK72] Length = 197 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK+I+ R +SQ+ L E + ++ Q + +E+G L +S+V E + Sbjct: 1 MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDVQNLLLLSKVFEVSLDK 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 I + + Sbjct: 61 LVKGDLETMKQIIHNQEFMH 80 >gi|310658350|ref|YP_003936071.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825128|emb|CBH21166.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 328 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I L R G SQE+L E L ++ Q + K+E + G ++ +SE+ + S Sbjct: 6 KIILLRKKSGWSQEELAEKLNVSRQSISKWEGAQSVPGMDKILQLSEIFGVSTDYLLKDS 65 Query: 78 PTVCS 82 + Sbjct: 66 IELEE 70 >gi|260203616|ref|ZP_05771107.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis K85] gi|289573051|ref|ZP_06453278.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289537482|gb|EFD42060.1| transcriptional regulator [Mycobacterium tuberculosis K85] Length = 474 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T + DI+ + + V + +S G L R + + R+ I Sbjct: 65 ASQDDTRLAAELREVTLDRDLDIAIDPHEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKKYR 134 + ++E+++ Sbjct: 119 TAQLAAATEERFS 131 >gi|213158984|ref|YP_002320982.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215482031|ref|YP_002324213.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|301345648|ref|ZP_07226389.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB056] gi|301512343|ref|ZP_07237580.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB058] gi|301596168|ref|ZP_07241176.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB059] gi|332851919|ref|ZP_08433805.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332868837|ref|ZP_08438430.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|213058144|gb|ACJ43046.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213988455|gb|ACJ58754.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|332729612|gb|EGJ60949.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332733090|gb|EGJ64289.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 183 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ V Sbjct: 2 SQSSSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAV 61 Query: 66 LESP 69 L Sbjct: 62 LGVD 65 >gi|262273101|ref|ZP_06050918.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] gi|262222857|gb|EEY74165.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] Length = 121 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 10/118 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +V +RIR R ++Q ++ + L + Q E G S L I++V P+ Sbjct: 4 VKAHVAQRIREAREYRDITQVEMAQHLDVARQTYLDIESGKTEPKVSSLATIADVTGRPL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++F + + F D L F Q+ D R+ +++ + Sbjct: 64 NWFL---------FGESTRSDIAFTHRDDLNTLLALFSQLPDSA-RKLVMDQALLLAQ 111 >gi|153971519|ref|YP_001393059.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|153971715|ref|YP_001393216.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955041|emb|CAL25393.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955200|emb|CAL25550.1| DNA-binding protein RDGA [Vibrio vulnificus] Length = 208 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 13 INVGKRIRLRRMI-LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G RI+ R L +S+++LG LG++ V ++E GVN RL +S VL++ Sbjct: 1 MSLGGRIKKLREESLHISKKELGAILGVSQSAVNQWENGVNYPSQKRLIELSRVLKTTYE 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFI 95 + + + + +D S E + + Sbjct: 61 WLVNGTTSSHNDGSEYEIPFYEHV 84 >gi|313624590|gb|EFR94572.1| DNA-binding protein [Listeria innocua FSL J1-023] Length = 180 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 37/75 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|258516796|ref|YP_003193018.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780501|gb|ACV64395.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 133 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G RIR +R++ +Q++L E + ++ Q + +E+G + + +++ L + Sbjct: 1 MNIGNRIRTQRILKDFTQKQLAELVNVSPQVISNWERGYTPVIPHDDVVRLADALGISPA 60 Query: 72 FFF---DVSPTVCSDISSEENNVMDFI 95 + D+S T I S N+ D + Sbjct: 61 YLLCETDISETPEQQIESAINDDADLL 87 >gi|217965105|ref|YP_002350783.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290893768|ref|ZP_06556748.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|217334375|gb|ACK40169.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290556717|gb|EFD90251.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|307570335|emb|CAR83514.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes L99] gi|313609965|gb|EFR85345.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 180 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 37/75 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|218779193|ref|YP_002430511.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760577|gb|ACL03043.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R+ ++Q +L E +G++ + + + E+GV L ++E L S + FF Sbjct: 8 IGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTLPSVKTLAKVAESLGSSLKQFF 67 Query: 75 DVSPTVCSDIS 85 D Sbjct: 68 DFDEDEGQGDG 78 >gi|110677441|ref|YP_680448.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453557|gb|ABG29762.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 190 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L E LG + + + E+ + S L+ I++VLE IS F Sbjct: 12 LGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEVSISMLF 71 Query: 75 DVSPTVCSDIS 85 +P ++ Sbjct: 72 RHAPATATEAG 82 >gi|148266398|ref|YP_001233104.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399898|gb|ABQ28531.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 355 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R R + GM QE LGE G+T Q + +E+G + ++ + ++L PI Sbjct: 3 LRELRELAGMKQEALGELAGVTRQTIAAWERGERQPSMQQVVKLCQILHVPID 55 >gi|229017114|ref|ZP_04174030.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] gi|229023292|ref|ZP_04179801.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228737997|gb|EEL88484.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228744173|gb|EEL94259.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] Length = 181 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEETNTDDLIVRSHKRKKMIIDNLSYELLSPDFTGNLATAIMTIPPN 112 >gi|187929409|ref|YP_001899896.1| putative phage repressor [Ralstonia pickettii 12J] gi|187726299|gb|ACD27464.1| putative phage repressor [Ralstonia pickettii 12J] Length = 302 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ RR L MSQE L + ++ + + E+G NR G+ + +++ L P+ + D Sbjct: 61 NRVLARRTQLEMSQEALAKKARLSQSTIAQIERGRNR-GSKYVVALADALLVPVRWLADG 119 Query: 77 SPTVCSDISSEENNVMD-FISTPDGLQLN 104 D+ + V F+S + L Sbjct: 120 -----GDMPPRPSEVEGLFVSQTEAEDLV 143 >gi|21914458|gb|AAM81423.1|AF527608_45 C2 protein [Salmonella phage P22-pbi] Length = 216 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGEDLLALSKALQCSPDYLLK 66 Query: 76 VSPTVCSDISSEENNV 91 + + + Sbjct: 67 GDLSQTNVAYHSRHEP 82 >gi|46907036|ref|YP_013425.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|226223423|ref|YP_002757530.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823927|ref|ZP_05228928.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|254931186|ref|ZP_05264545.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|254993305|ref|ZP_05275495.1| transcription regulator [Listeria monocytogenes FSL J2-064] gi|255521055|ref|ZP_05388292.1| transcription regulator [Listeria monocytogenes FSL J1-175] gi|46880302|gb|AAT03602.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|225875885|emb|CAS04589.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293582734|gb|EFF94766.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|293593153|gb|EFG00914.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|328467356|gb|EGF38436.1| transcription regulator [Listeria monocytogenes 1816] gi|332311210|gb|EGJ24305.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 180 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|255974995|ref|ZP_05425581.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256963766|ref|ZP_05567937.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257421770|ref|ZP_05598760.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|307271713|ref|ZP_07552984.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307285503|ref|ZP_07565642.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967867|gb|EET98489.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256954262|gb|EEU70894.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257163594|gb|EEU93554.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|306502727|gb|EFM71992.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306511591|gb|EFM80590.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|315155529|gb|EFT99545.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 180 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF P + +EE + + + G +L Sbjct: 61 FFSQQPLEQKIVYNEEESTL-YYDEEHGYEL 90 >gi|241889565|ref|ZP_04776863.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863187|gb|EER67571.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 181 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ ++QE+LGE ++ + + E+ + +I +VL FF Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D T S E+ + T +G +L Sbjct: 64 DKESTSQKVYYSLEDQ-TSYEETDEGYKLT 92 >gi|168182462|ref|ZP_02617126.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|237794872|ref|YP_002862424.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182674430|gb|EDT86391.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|229260963|gb|ACQ51996.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 370 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 4 LLIGKVIYRLRKEKAITQEQLANFIGVSTAAVSKWESGTSYPDITLLSVIATFFNVTIDT 63 Query: 73 FFDVSPTVCSD 83 + + + Sbjct: 64 LLNFKIELSDE 74 >gi|160878258|ref|YP_001557226.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426924|gb|ABX40487.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 163 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 34/57 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK I RR + G++Q++L + LG+T + + K+E G + L ++E+L ++ Sbjct: 6 IGKFIADRRKVRGLTQQQLADDLGLTNKAISKWETGQGMPDITTLPILAEMLGITVN 62 >gi|42518326|ref|NP_964256.1| hypothetical protein LJ0240 [Lactobacillus johnsonii NCC 533] gi|41582610|gb|AAS08222.1| hypothetical protein LJ_0240 [Lactobacillus johnsonii NCC 533] Length = 341 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G++I R +SQE L E + ++ Q V K+E + ++ +SE+ Sbjct: 15 IHMRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSELFGVTT 74 Query: 71 SFFFDVSPTV----CSDISSEENNVM 92 + +DI +E+ + + Sbjct: 75 DYLLKSGAPSFEIKTADIPAEDKSPI 100 >gi|146297213|ref|YP_001180984.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410789|gb|ABP67793.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 145 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G +IR+ R G+ Q +L + L I+ + +YE G R L I++ + Sbjct: 5 HEILKYLGLQIRVLREWAGLKQTELAKKLHISQTTLARYENGELRPPIETLLRIADFFDV 64 Query: 69 PIS 71 I Sbjct: 65 SID 67 >gi|320326809|gb|EFW82846.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882609|gb|EGH16758.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 123 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 11/112 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I++ R + +SQ +L +G + +YE+G++ +L +S L+ + Sbjct: 18 VGAKIKVLRKMADLSQAELAALIGCDAPIIGRYERGIHMPSIEQLIKLSTALKVSPA--- 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++ P +I IS L L ++ID + +KII+ +S+ Sbjct: 75 ELLPNQDDEIRQ------QLISLRSQLSLIG--MKIDSPVILEKIIDHAKSL 118 >gi|315122908|ref|YP_004063397.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496310|gb|ADR52909.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 210 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K++ NP+ +G+RI+ R GM+ ++ GE +G+ V YE+G++ I Sbjct: 88 KRLINPI--EIGERIKKFRKEEGMTLKEFGEWVGLPVSTVSTYERGISAPEIKTALKIKR 145 Query: 65 VLESPISFFFDVSPTVCS 82 L P+ + + + Sbjct: 146 ALGKPLDWIYFGDEEIVP 163 >gi|256617057|ref|ZP_05473903.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256596584|gb|EEU15760.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] Length = 111 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 >gi|260588634|ref|ZP_05854547.1| DNA-binding protein [Blautia hansenii DSM 20583] gi|260541109|gb|EEX21678.1| DNA-binding protein [Blautia hansenii DSM 20583] Length = 354 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR+ ++QE++ LG+T V K+EKG + + L ++ +LE+ ++ Sbjct: 7 IRQRRIERNLTQEQVANYLGVTAPAVNKWEKGTSYPDITTLPALARILETDLNTLLSFKE 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + N + + +G +I K+R+ Sbjct: 67 ELTEQEIAIFLNTLSELLEKEGFLKV---YEIAMEKIRE 102 >gi|254510463|ref|ZP_05122530.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534174|gb|EEE37162.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 431 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR I G+ Q +L +GI+ + E R+G L I+ L S Sbjct: 3 DTLTGSRIRERRQIAGLRQAELARRVGISASYLNLIEHNRRRIGGKVLVDIAAALSVEPS 62 Query: 72 FFFDV-SPTVCSDISSEENNVMDFISTPDGLQ 102 T+ S + + + + DGL+ Sbjct: 63 LLTQGVEETLISALREAAADAVGQQAEVDGLE 94 >gi|221642312|ref|YP_002533399.1| transcriptional regulator, Cro/CI family [Bacillus cereus Q1] gi|221243247|gb|ACM15956.1| transcriptional regulator, Cro/CI family [Bacillus cereus Q1] Length = 66 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ L MSQ L +G+ + + E G I++VL++PI F Sbjct: 6 RMKEYRVKLNMSQGDLANKVGVRRETIGNLENGKYNPSLKLAYDIAKVLKAPIEVLF 62 >gi|163746698|ref|ZP_02154055.1| transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] gi|161379812|gb|EDQ04224.1| transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] Length = 430 Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR++ G+ Q +L + GI+ + E R+G L +I++ L + Sbjct: 7 GSRIRERRVMAGLKQAELAQQSGISASYLNLIEHNRRRIGGKLLLNIAQALGVEPQALTE 66 Query: 76 VSPTVCSDISSEENN 90 + E Sbjct: 67 GAEAALIAALREAAE 81 >gi|229590656|ref|YP_002872775.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|229362522|emb|CAY49429.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 193 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ +D+ + I+ R+ G+S +L + G+ + + E G+ L ++ Sbjct: 10 KNNPSRIDL-LALSIKRERLAAGLSLTELAKRAGVAKSTLSQLESGIGNPSIETLWSLAM 68 Query: 65 VLESPISFFFDVSPTVCSDISSEEN 89 + ++ FF+ I + E Sbjct: 69 AMGLQVTRFFEQPQQPLRVIRANEG 93 >gi|116496181|ref|YP_807915.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239630630|ref|ZP_04673661.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067783|ref|YP_003789806.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116106331|gb|ABJ71473.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526913|gb|EEQ65914.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440190|gb|ADK19956.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G R++ R GM+Q +L + L ++ + V +E G N+ + ++ + + Sbjct: 3 DLSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVD 62 Query: 72 FFFDVSPTVCSD 83 C+D Sbjct: 63 DLLHQQSVPCAD 74 >gi|25026941|ref|NP_736995.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259508572|ref|ZP_05751472.1| DNA-binding protein [Corynebacterium efficiens YS-314] gi|23492221|dbj|BAC17195.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259163839|gb|EEW48393.1| DNA-binding protein [Corynebacterium efficiens YS-314] Length = 474 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 14/130 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII---ELVRSIVSSE 130 D S V D + + I+ ++ + + +L R++V Sbjct: 65 ------SRDDDSRLLAEVQDVMLDREI-----NPSSIELQELSEMVYNHPQLARAMVEMH 113 Query: 131 KKYRTIEEEC 140 ++YR + ++ Sbjct: 114 RRYRNVRDKL 123 >gi|331267170|ref|YP_004326800.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] gi|326683842|emb|CBZ01460.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] Length = 165 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 5 EKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLLLD 64 Query: 75 DVSPTVCSDISSEEN 89 + S +++ EE+ Sbjct: 65 ENSEKTSTEVILEED 79 >gi|295399294|ref|ZP_06809276.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294978760|gb|EFG54356.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 113 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+R++L R G+SQ+++ E +GI + YE G R L ++++ E + + Sbjct: 1 MDLGERLKLCREKKGLSQKEVAEKIGIKNNTLSNYESGERRPDYETLCKLADLYEVSLDY 60 Query: 73 FFDVSPTVCS 82 Sbjct: 61 LIKGQEHKEE 70 >gi|192361034|ref|YP_001984168.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190687199|gb|ACE84877.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] Length = 72 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 GKR++ R M+QE+L E +GIT + + E+G+ L+ ++ L P+ Sbjct: 5 KQFGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVPVQS 64 Query: 73 FFDVSPT 79 F Sbjct: 65 LFAFDEP 71 >gi|187477387|ref|YP_785411.1| transcriptional regulator [Bordetella avium 197N] gi|115421973|emb|CAJ48494.1| putative transcriptional regulator [Bordetella avium 197N] Length = 177 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + PV +V +R R G+SQ L G++ + + E G + ++L I+ L Sbjct: 1 MSEPVLEHVSANVRRLRAERGLSQTALAARAGLSRRMIVGLESGEANISLAKLGLIATAL 60 Query: 67 ESPISFFFDVSPTVCSDISS 86 + F ++ + + Sbjct: 61 DVN---FIELVSSPGQTPGA 77 >gi|225378306|ref|ZP_03755527.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans DSM 16841] gi|83596349|gb|ABC25509.1| transcriptional regulator [Roseburia inulinivorans DSM 16841] gi|225209873|gb|EEG92227.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans DSM 16841] Length = 113 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 15/115 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ RR +QE L +GI+ + E+G +V L I+ L++ Sbjct: 8 IGTRIKERRAKKKWTQEMLASAVGISNPHMSNIERGRTKVSLGTLTDIANALDT------ 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + D V D + + + N I+I + ++V+++V S Sbjct: 62 -TLDELICDNLVRGKVVFDEEISQELKECNEEDIRI--------VYDMVKALVKS 107 >gi|21231057|ref|NP_636974.1| hypothetical protein XCC1604 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768938|ref|YP_243700.1| hypothetical protein XC_2631 [Xanthomonas campestris pv. campestris str. 8004] gi|21112686|gb|AAM40898.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574270|gb|AAY49680.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 113 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLG----IT-FQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R+R RM +G +Q +L E +G ++ +V +YE G + + + +++ L+ P+ Sbjct: 12 GTRLRHARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDPATAEALAKALKLPV 71 Query: 71 SFF 73 ++F Sbjct: 72 AYF 74 >gi|16804372|ref|NP_465857.1| hypothetical protein lmo2334 [Listeria monocytogenes EGD-e] gi|217963568|ref|YP_002349246.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|226224879|ref|YP_002758986.1| transcriptional regulator [Listeria monocytogenes Clip81459] gi|254831241|ref|ZP_05235896.1| DNA-binding protein [Listeria monocytogenes 10403S] gi|254901140|ref|ZP_05261064.1| DNA-binding protein [Listeria monocytogenes J0161] gi|254992018|ref|ZP_05274208.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] gi|255022554|ref|ZP_05294540.1| DNA-binding protein [Listeria monocytogenes FSL J1-208] gi|255025516|ref|ZP_05297502.1| DNA-binding protein [Listeria monocytogenes FSL J2-003] gi|255519749|ref|ZP_05386986.1| DNA-binding protein [Listeria monocytogenes FSL J1-175] gi|284802775|ref|YP_003414640.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578] gi|284995917|ref|YP_003417685.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923] gi|16411822|emb|CAD00412.1| lmo2334 [Listeria monocytogenes EGD-e] gi|217332838|gb|ACK38632.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|225877341|emb|CAS06055.1| Putative transcriptional regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284058337|gb|ADB69278.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578] gi|284061384|gb|ADB72323.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923] gi|307571856|emb|CAR85035.1| HTH-type transcriptional regulator, putative [Listeria monocytogenes L99] gi|328465370|gb|EGF36617.1| DNA-binding protein [Listeria monocytogenes 1816] Length = 115 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D + S F I + ++ + +EL Sbjct: 61 LLDDVAGLREKNS------------------VNAFPLIGNPELEKWYLEL 92 >gi|304398841|ref|ZP_07380711.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304353545|gb|EFM17922.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 210 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIRLRR L ++Q++L + + ++ + ++EK L ++E L +F Sbjct: 6 LGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEETLPRGENLLRLAEALGCAPAFLI 65 Query: 75 DVSPTVCSDIS 85 D V S+ + Sbjct: 66 DGDGPVFSESA 76 >gi|283769265|ref|ZP_06342169.1| peptidase S24-like domain protein [Bulleidia extructa W1219] gi|283104241|gb|EFC05620.1| peptidase S24-like domain protein [Bulleidia extructa W1219] Length = 275 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 VG+RIR RR+ L +S E LG +G + +YEKG + + + ++ L + + Sbjct: 5 VGERIRKRRIELKLSPEDLGNKIGKDRATIYRYEKGEIENLPVGIIAPLATALHTTPQYL 64 Query: 74 FD-VSPTVCSDISSEENNVMDFI 95 ++ ++ +N+ DF+ Sbjct: 65 MGWEEDPNLTERDNDLDNISDFL 87 >gi|194397827|ref|YP_002037955.1| putative transcriptional activator [Streptococcus pneumoniae G54] gi|194357494|gb|ACF55942.1| putative transcriptional activator [Streptococcus pneumoniae G54] Length = 287 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 4/96 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ R +R +SQ+ L E GI Q Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRXKRKEXXLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S++S+ + + + Y +I+ Sbjct: 64 EQIEIKSNLSNFKQLSARLLDDRN-YDNLEYIYRIE 98 >gi|332653833|ref|ZP_08419577.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332516919|gb|EGJ46524.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 252 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G++I R G+SQE L L ++ Q V K+E G + ++ ++++ + Sbjct: 39 LGEKICTLRTGKGLSQEDLAAKLEVSRQSVSKWETGQSVPDLEKIIKLADLFGVNVD 95 >gi|317127194|ref|YP_004093476.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472142|gb|ADU28745.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 6/83 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-- 70 +++G I +R L +SQE + + LG++ Q V K+E +++ L ++ + E I Sbjct: 1 MSLGSNINNKRKSLNLSQEYVADQLGVSRQAVSKWENNLSKPSTQNLIKMATLFECDIKE 60 Query: 71 ----SFFFDVSPTVCSDISSEEN 89 F + + + S+++ Sbjct: 61 LVSSDKFMEKQKNLENQTESKKD 83 >gi|161504999|ref|YP_001572111.1| hypothetical protein SARI_03129 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866346|gb|ABX22969.1| hypothetical protein SARI_03129 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 86 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ ++QEKLG GI + ++ YE G ++ + + VL P + Sbjct: 4 KRLKEARLRAKLTQEKLGVLAGIEEATAYSRLSHYENGTHKPTFELVCEFARVLNVPECY 63 Query: 73 FFDVSPTVCSDI 84 F+ V ++ Sbjct: 64 FYTVDDGFADEV 75 >gi|157734756|dbj|BAF80762.1| prophage repressor [Enterobacteria phage P22] Length = 216 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGESLLALSKALQCSPDYLLK 66 Query: 76 VSPTVCSDISSEENNV 91 + + + Sbjct: 67 GDLSQTNVAYHSRHEP 82 >gi|116872182|ref|YP_848963.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741060|emb|CAK20180.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 180 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|254488256|ref|ZP_05101461.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214045125|gb|EEB85763.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 431 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR++ G Q L + +GI+ + E R+G L +I+ L + + Sbjct: 8 GSRIRERRVMAGQKQADLAKEIGISASYLNLIEHNRRRIGGKLLLNIANALGVEPTALTE 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDG 100 + E + +S P+ Sbjct: 68 GAEAALIASLREAADDAG-LSGPEA 91 >gi|251797962|ref|YP_003012693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545588|gb|ACT02607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 187 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIRL R +Q+++ G T + K E G + L I+ L +S Sbjct: 1 MELGKRIRLIRKEQKRTQDEVSAACGFTKSMLSKIENGSTMPAVATLMKIASALGVKVSD 60 Query: 73 FFDVSPTVCS 82 + SP + Sbjct: 61 LLEPSPKSGT 70 >gi|146322242|ref|YP_001174729.1| hypothetical protein pGdh442_p22 [Lactococcus lactis] gi|145968733|gb|ABQ00011.1| hypothetical protein [Lactococcus lactis] Length = 201 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G +QE L E IT + +Q+ E G + V L IS L P+S F+ Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENGTD-VSLDTLASISNALLVPVSELFERI 63 Query: 78 PTVCSDIS 85 ++ Sbjct: 64 DEEAKEVE 71 >gi|311278398|ref|YP_003940629.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747593|gb|ADO47345.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 83 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + +G+RIR R+ +G+SQE + GI + E+GV + IS+ Sbjct: 2 KNTGSIKKILGERIRTLRLDMGLSQEAFADKCGIDRTYMSGIERGVRNPTLIVICAISDG 61 Query: 66 LESPISFFFDVSPTVCSDISSE 87 LE +S F + +D + Sbjct: 62 LEMDLSHLFMFADGAHADNEAP 83 >gi|257866591|ref|ZP_05646244.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872893|ref|ZP_05652546.1| predicted protein [Enterococcus casseliflavus EC10] gi|257800549|gb|EEV29577.1| predicted protein [Enterococcus casseliflavus EC30] gi|257807057|gb|EEV35879.1| predicted protein [Enterococcus casseliflavus EC10] Length = 304 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G++I +R ++Q L + L +++Q V +E+G + +L ++ +L+ I Sbjct: 7 RKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAILDLSID 65 >gi|257865722|ref|ZP_05645375.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257872057|ref|ZP_05651710.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257799656|gb|EEV28708.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257806221|gb|EEV35043.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 396 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 4/103 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+ I RR G++Q++L + ++ V K+E G + + L ++ + + Sbjct: 1 MDLPIGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQSYPDITSLPLLAAYFDCSV 60 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +SP I + + + L L + F + Sbjct: 61 DELLILDSQLSPKEIQRIYQLLKDAFQTKTPSEVLALAQSFTK 103 >gi|253579239|ref|ZP_04856509.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251849337|gb|EES77297.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 313 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R ++QE+L E G++ + V ++E G+N S L ++E + + Sbjct: 6 IGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVEMRELL 65 Query: 75 DVSPTVCSDISSEEN 89 D + + +E Sbjct: 66 DGERSQTMNKEMKET 80 >gi|254518274|ref|ZP_05130330.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912023|gb|EEH97224.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 110 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 ++++ R G+SQE L E +G++ Q V K+E + +L +S V I Sbjct: 8 EKLQGLRKEKGLSQEGLAELVGVSRQSVAKWESKKSYPEVDKLVQLSNVFGVSIDKLLKN 67 Query: 76 -----VSPTVCSDISSEENNVMDFI 95 + + I+ + ++DF+ Sbjct: 68 IEEECCNKEIKKSINGIDEKIIDFL 92 >gi|255283010|ref|ZP_05347565.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] gi|255266549|gb|EET59754.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] Length = 185 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V+ +GKRIR R G++Q++L + +T + + E+G L + E L + Sbjct: 4 DYVNAQIGKRIRDLRNRKGLTQQELADRAELTKGFISQLERGQVSPSVVTLLDLIECLGT 63 Query: 69 PISFFF 74 S FF Sbjct: 64 TASDFF 69 >gi|212710117|ref|ZP_03318245.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] gi|212687324|gb|EEB46852.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+R++ R G+SQ +L + G + ++ YE G ++ A ISE L Sbjct: 4 INEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVS 63 Query: 70 IS 71 + Sbjct: 64 PA 65 >gi|148269420|ref|YP_001243880.1| cupin 2 domain-containing protein [Thermotoga petrophila RKU-1] gi|147734964|gb|ABQ46304.1| Cupin 2, conserved barrel domain protein [Thermotoga petrophila RKU-1] Length = 188 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ G++QE+L E ++ + + E L+ I E L + + Sbjct: 13 VRIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 72 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF EE + Sbjct: 73 FFSDVEEERVVFKKEERVPV 92 >gi|312792346|ref|YP_004025269.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179486|gb|ADQ39656.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 274 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +S+ L E LG++ Q + YE G L I+E + + + Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIAEYFDVTVDYL 62 >gi|307151755|ref|YP_003887139.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981983|gb|ADN13864.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 78 Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 6 KIPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P+ DI G R+R R G+SQE L + + + E+G + ++ I+ Sbjct: 2 KTPDDNDIRKQFGNRLRYLRQTRGLSQEALADLCNLDRSYIGGVERGERNISLLNIKKIA 61 Query: 64 EVLESPISFFFDVSPT 79 + L FFD + Sbjct: 62 DALGISPKEFFDEQDS 77 >gi|332298497|ref|YP_004440419.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181600|gb|AEE17288.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 115 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 2/105 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R +SQE+L + +G++ + E G ++ I++ L+ Sbjct: 13 IGRRIKKYRWESNISQEELADAVGVSTTHMSHIETGGTKLSLGVFVKIADALQISADLLL 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + SE + + L + R+++ Sbjct: 73 NGDRATSK--LSEIDELFSASDERQSRILLEITRAAKNALDRERV 115 >gi|239945081|ref|ZP_04697018.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 15998] gi|239991543|ref|ZP_04712207.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 11379] gi|291448543|ref|ZP_06587933.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] gi|291351490|gb|EFE78394.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] Length = 509 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|291523310|emb|CBK81603.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 336 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L LG++ Q V K+E R+ +SE+ + Sbjct: 6 KITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFCVSTDYLLKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + E + ++ F Sbjct: 66 MKAENITYHESSESYAEPLKKVTMENANEF 95 >gi|291166792|gb|EFE28838.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC 35896] Length = 172 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 36/67 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R++ ++QE+L +T + K E+ + S L I EVL + + Sbjct: 1 MDIGEKIKRLRILNQLTQEELALRCDLTKGFISKVERNLTSPSISTLMDILEVLGTDLKS 60 Query: 73 FFDVSPT 79 FFD + Sbjct: 61 FFDDAID 67 >gi|168206199|ref|ZP_02632204.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] gi|170662344|gb|EDT15027.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] Length = 263 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG RI+ R +SQ++L G++ + YE + L+ I++ L+ I Sbjct: 1 MNVGDRIKYFRKAENLSQDELASKSGLSRNAISNYELNKRQPNIVVLKKIADALKVDIDD 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|91790971|ref|YP_551922.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91700851|gb|ABE47024.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 107 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G++IR R G++ E L G++ + + E + R A +LQ I++VL +SFF Sbjct: 5 LGEKIRSYRTKKGLTLEALAHQAGLSKSYLWELENRESQRPSAEKLQGIADVLGVDVSFF 64 Query: 74 FDVSPTVCSDISSEENNVMDF 94 D S + ++ +F Sbjct: 65 VDDSVDNPQEAHRDKQFFRNF 85 >gi|255526730|ref|ZP_05393632.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296187021|ref|ZP_06855421.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255509565|gb|EET85903.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296048459|gb|EFG87893.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 235 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +GKRIR R M+ ++L + + + V KYEKG + L ++++VL + Sbjct: 4 ISIEIGKRIRSFRKAKKMTIQELADQIYKSKATVSKYEKGEIVIDIVTLYNVAKVLRIHV 63 Query: 71 S 71 Sbjct: 64 D 64 >gi|188585017|ref|YP_001916562.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349704|gb|ACB83974.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 120 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +G RIR R L +S++KLG +G+T + + E+G + L IS+VL+ I F Sbjct: 10 IGDRIREERERLDLSRKKLGRLIGVTEHHIGQLERGERNTSLTTLAKISQVLKVSIDSFV 69 Query: 74 FDVSPTVCSDISSEENNVMDF 94 FD + S + Sbjct: 70 FDTGEPNNDEKSERSTERAEL 90 >gi|217971957|ref|YP_002356708.1| putative phage repressor [Shewanella baltica OS223] gi|217497092|gb|ACK45285.1| putative phage repressor [Shewanella baltica OS223] Length = 233 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R + RR I+ ++Q +L + +G++ + ++E G L +++ L+ + Sbjct: 2 KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61 Query: 73 F-FDVSPTVCSDISSEE 88 F S S+ E Sbjct: 62 LMFGDSKNTKKPESNAE 78 >gi|90579989|ref|ZP_01235797.1| putative transcriptional regulator [Vibrio angustum S14] gi|90438874|gb|EAS64057.1| putative transcriptional regulator [Vibrio angustum S14] Length = 82 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G +Q++LG LG+ ++ +YE+G + +Q I +VL P ++F Sbjct: 8 RLKAARKAAGYTQQQLGIALGMDPNTASARMNQYERGKHTPDYQTMQRIGKVLGVPTAYF 67 Query: 74 F 74 + Sbjct: 68 Y 68 >gi|126175811|ref|YP_001051960.1| putative phage repressor [Shewanella baltica OS155] gi|125999016|gb|ABN63091.1| putative phage repressor [Shewanella baltica OS155] Length = 233 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R + RR I+ ++Q +L + +G++ + ++E G L +++ L+ + Sbjct: 2 KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61 Query: 73 F-FDVSPTVCSDISSEE 88 F S S+ E Sbjct: 62 LMFGDSKNTKKPESNAE 78 >gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 237 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QE+LG+ + +T + YE G LQ I+EV + I F Sbjct: 6 RLKKLRLEHKLTQEQLGKKINVTKVSISGYENGTRTPDIETLQKIAEVFDVTIDFL 61 Score = 38.6 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 5/87 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-----S 71 K ++ R+ ++ ++L + +++ E G + + +SE L++P Sbjct: 79 KNLKRLRIKQNLTLKELATKAKMDHERLADLESGKIDPDLNDIIDLSEALDAPEHVVSKG 138 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP 98 F++SP E D IS Sbjct: 139 TVFEISPEKLEQNRKELQAKFDLISHK 165 >gi|291560817|emb|CBL39617.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 110 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NVGKR++ R G +QE++ + L +T + E ++ L + +++L I + Sbjct: 8 NVGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S+EN D + + L+L F Sbjct: 68 L--------RPESDENGEKDDVLNKEILRLLEKF 93 >gi|163734287|ref|ZP_02141727.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161392295|gb|EDQ16624.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 190 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L E LG + + + E+ + S L+ I++VLE IS F Sbjct: 12 LGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEVSISMLF 71 Query: 75 DVSPTVCSDIS 85 +P ++ Sbjct: 72 RHAPATATEAG 82 >gi|145218938|ref|YP_001129647.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205102|gb|ABP36145.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 210 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R G+SQE+L + + V K E G + L+ +E L +PIS Sbjct: 5 QIGLRIKELRSQNGLSQEELARRVELPRTAVTKIESGSQELRFRELEKFAEALGTPISAL 64 Query: 74 FDVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKII-ELVRSIVSSE 130 + + + + MD F+ T + + + + ++R ++ L R+ + E Sbjct: 65 VEKPHESPASVMCMSSTFMDNSFMMTSESSEE----YKASNTRLRTMLLFILQRTAGNPE 120 Query: 131 KKYRTIEE 138 R I + Sbjct: 121 MDDRRIAD 128 >gi|319940112|ref|ZP_08014466.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus 1_2_62CV] gi|319810826|gb|EFW07153.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus 1_2_62CV] Length = 169 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + KRI R G SQ++L E + ++ Q + K+E ++ +S++ + + Sbjct: 1 MQINKRIFELRKERGWSQDQLAEKVNVSRQSISKWESAQALPEIEKVIELSKIFQVTTDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|313672769|ref|YP_004050880.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939525|gb|ADR18717.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 200 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +IN+G+RI+ R + ++ + + G + + + E V + L I++VL + Sbjct: 5 NINIGERIKRLRHMRNLTLQDVANFTGFSKALISQIENNVVTPPITTLAKIAKVLNVKMV 64 Query: 72 FFFDVS 77 +FF+ Sbjct: 65 YFFEDD 70 >gi|69245861|ref|ZP_00603678.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256853748|ref|ZP_05559113.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257879178|ref|ZP_05658831.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257882003|ref|ZP_05661656.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890008|ref|ZP_05669661.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615576|ref|ZP_05713346.1| XRE family transcriptional regulator [Enterococcus faecium DO] gi|260560175|ref|ZP_05832352.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|294620832|ref|ZP_06700036.1| transcriptional regulator, xre family [Enterococcus faecium U0317] gi|314947724|ref|ZP_07851131.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|68195563|gb|EAN10005.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256710691|gb|EEU25734.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257813406|gb|EEV42164.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817661|gb|EEV44989.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826368|gb|EEV52994.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073742|gb|EEW62067.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291599617|gb|EFF30630.1| transcriptional regulator, xre family [Enterococcus faecium U0317] gi|313645704|gb|EFS10284.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|315030235|gb|EFT42167.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315144772|gb|EFT88788.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315158697|gb|EFU02714.1| helix-turn-helix protein [Enterococcus faecalis TX0312] Length = 111 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 >gi|325926434|ref|ZP_08187757.1| putative transcription factor, MBF1 like protein [Xanthomonas perforans 91-118] gi|325543177|gb|EGD14617.1| putative transcription factor, MBF1 like protein [Xanthomonas perforans 91-118] Length = 134 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLG----IT-FQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R+R RM +G +Q +L E +G ++ +V +YE G + + + +++ L+ P+ Sbjct: 32 GTRLRHARMAMGWTQAELAERIGMVDNVSGATRVSRYETGQHDPDPATAEALAKALKLPV 91 Query: 71 SFF 73 ++F Sbjct: 92 AYF 94 >gi|225375055|ref|ZP_03752276.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] gi|225213127|gb|EEG95481.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] Length = 305 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 38/73 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR +R+ GM+Q++L E + +T + V ++E G S L+ ++E L ++ Sbjct: 6 IGKYIRKKRIEKGMTQQQLAEKIQVTEKAVSRWETGRGVPDISLLEPLAEELHVSVTELL 65 Query: 75 DVSPTVCSDISSE 87 + V + + Sbjct: 66 NGEERVQEEAVHD 78 >gi|212709332|ref|ZP_03317460.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] gi|212688244|gb|EEB47772.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] Length = 99 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G IR R+ G+S+++L + ++ QQV +YE+GV+ + + + L P Sbjct: 3 LNKKIGNFIRNARVSKGLSEKELASLISVSQQQVSRYERGVSTLSIQNILILLNALNIPF 62 Query: 71 SFF 73 F Sbjct: 63 DEF 65 >gi|217961397|ref|YP_002339965.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|229140643|ref|ZP_04269194.1| Prophage LambdaBa02, repressor protein [Bacillus cereus BDRD-ST26] gi|217063695|gb|ACJ77945.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|228642816|gb|EEK99096.1| Prophage LambdaBa02, repressor protein [Bacillus cereus BDRD-ST26] Length = 122 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 15/126 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--------ITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+RI+L R G++Q+ L + +T + YE G + L IS+VL Sbjct: 4 LGQRIKLSRKKRGLTQDALALKIKEKMDTETKVTKTTISNYETGYSSPSNETLVIISDVL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + S + +F + + + + + + +++++++ Sbjct: 64 DVSVDYLLGRSDDPELNAVQFTELRKEF---NELIDMLEKMPK----EKQDMLLDMMKAA 116 Query: 127 VSSEKK 132 V KK Sbjct: 117 VGHNKK 122 >gi|160880106|ref|YP_001559074.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428772|gb|ABX42335.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 268 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I + R +SQ L E LG++ Q + K+E G + +L +SE+ + + Sbjct: 1 MKLGEKIVMFRTEHHLSQGDLAEKLGVSRQSISKWETGGSVPDLDKLIALSELFDVSLD 59 >gi|332523855|ref|ZP_08400107.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] gi|332315119|gb|EGJ28104.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] Length = 230 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK+++ R MSQE L + +G++ + +E+G N L + + +F Sbjct: 4 GKQLKAIRQKEKMSQENLSDQIGVSKMTISNWEQGKNNPNQKHLAQLVAIFRVSEDYF 61 >gi|308071047|ref|YP_003872652.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305860326|gb|ADM72114.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 129 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R + ++QE+L E T + K E+G V L+ I+E L + + Sbjct: 5 KLIGTKIRQFRKLRDITQEQLAEASDSTGSYIGKLERGEVNVQIKTLEKIAEALNTNVFA 64 Query: 73 FFDVSP 78 FF+ + Sbjct: 65 FFNFNS 70 >gi|317047999|ref|YP_004115647.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316949616|gb|ADU69091.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 181 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 13/132 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++ R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 HLSLALKQLRQANGWSLTLAAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-SIVSSEKK 132 S ++ + L Y D ++R +L+ ++ + Sbjct: 67 IQGSELPPGAAATFSQTNAQMQAKS----LLPY-----DAQLR---FDLLEVTLAPGAQS 114 Query: 133 YRTIEEECMVEQ 144 + E ++EQ Sbjct: 115 DSSPHEHGVIEQ 126 >gi|222053702|ref|YP_002536064.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221562991|gb|ACM18963.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 38/74 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R + M+QEKL E +G+ + V E G + ++ I++ L+ + F Sbjct: 8 LGARIKELRKLRKMTQEKLAEQIGVDPKYVSFIEVGRSSPSLEAMEKIAQALDVEMKDMF 67 Query: 75 DVSPTVCSDISSEE 88 D S ++S E+ Sbjct: 68 DFSHHEAREVSIEQ 81 >gi|88812246|ref|ZP_01127497.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231] gi|88790497|gb|EAR21613.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231] Length = 179 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 R++L R LG + E L + G+T + K E+G+N + ++E L + F D Sbjct: 4 RLKLLRKKLGFTLEALAQQTGLTKSYLSKVERGLNTPSIAVALKVAEALNVQVEELFSDG 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 N S DGL +I +V Sbjct: 64 DEASDGYSLVRANERGSLASGDDGLAYASLANRIGSRRV 102 >gi|218898722|ref|YP_002447133.1| helix-turn-helix domain protein [Bacillus cereus G9842] gi|218540740|gb|ACK93134.1| helix-turn-helix domain protein [Bacillus cereus G9842] Length = 262 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEQSNE 71 >gi|146342719|ref|YP_001207767.1| transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195525|emb|CAL79550.1| putative transcriptional regulator with a putative HTH DNA-binding domain [Bradyrhizobium sp. ORS278] Length = 225 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K+ ++ +G +R R L ++ +LG GI+ + K E G + L Sbjct: 29 MAPKEATPTLETEIGAEVRRLRKDLDLTVAELGAAAGISAGMMSKIENGSISPSLATLSA 88 Query: 62 ISEVLESPISFFF 74 +++ L PI+ F Sbjct: 89 LAKALNVPIARLF 101 >gi|304321631|ref|YP_003855274.1| XRE family transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303300533|gb|ADM10132.1| transcriptional regulator, XRE family protein [Parvularcula bermudensis HTCC2503] Length = 226 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G+RI+ R ++QE LG LG++ V +E +++ L +++ LE Sbjct: 15 PIDT-IGQRIKAARKRCRLNQENLGRELGVSQPTVANWEADIHQPRPFMLGKLADRLEVT 73 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTP 98 + + + ++ + ++ P Sbjct: 74 VGWLAGGDEGGSVSV---DHPMASYLRRP 99 >gi|295113444|emb|CBL32081.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Enterococcus sp. 7L76] Length = 115 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD 66 >gi|242239429|ref|YP_002987610.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242131486|gb|ACS85788.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 131 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R G++Q +L + L ++ Q VQ +E G R+ S L ++ L + Sbjct: 16 LGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRRIQISALPAVARQLSVSLDALL 75 Query: 75 DVSPT 79 S T Sbjct: 76 GDSHT 80 >gi|212709444|ref|ZP_03317572.1| hypothetical protein PROVALCAL_00484 [Providencia alcalifaciens DSM 30120] gi|212687959|gb|EEB47487.1| hypothetical protein PROVALCAL_00484 [Providencia alcalifaciens DSM 30120] Length = 112 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G IR R G+S +L + + I+ QQ+ +YE G+ + L +IS L+ P Sbjct: 23 GLIIREIRKENGISAHELAKKINISQQQMSRYELGITKFSLDMLFNISVALDIP 76 >gi|191639701|ref|YP_001988867.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190714003|emb|CAQ68009.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327383814|gb|AEA55290.1| Transcriptional regulator [Lactobacillus casei LC2W] Length = 185 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G R++ R GM+Q +L + L ++ + V +E G N+ + ++ + + Sbjct: 3 DLSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVD 62 Query: 72 FFFDVSPTVCSD 83 C+D Sbjct: 63 DLIHQQSVPCAD 74 >gi|167754509|ref|ZP_02426636.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|237733852|ref|ZP_04564333.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705341|gb|EDS19920.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|229383190|gb|EEO33281.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 242 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R G+SQE+L LG++ Q V K+E G + R+ I+++ + Sbjct: 9 KYRKQKGLSQEELAFRLGVSRQSVSKWESGQSTPELERIIEIADLFGISLD 59 >gi|291539786|emb|CBL12897.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 223 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 30/56 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK I+ RM LG +QE+L LG+T Q + +E + +L IS+ L I Sbjct: 6 IGKNIKELRMKLGYTQEQLANELGVTRQTLSNWECEKTIPDSMQLNEISKRLNISI 61 >gi|229101738|ref|ZP_04232455.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] gi|228681686|gb|EEL35846.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] Length = 149 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|223985127|ref|ZP_03635223.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] gi|223962949|gb|EEF67365.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] Length = 260 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+++ R G+SQE L + LG T Q V K+E ++ +S++ + Sbjct: 1 MNFGEKLFKLRKEKGLSQEALADQLGTTRQAVSKWENNQGYPETEKILQLSQLFGVSTDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|170760881|ref|YP_001786959.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407870|gb|ACA56281.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 370 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 4 LLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTIDT 63 Query: 73 FFDVSPTVCSD 83 + + + Sbjct: 64 LLNFKIELSDE 74 >gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 340 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 ++ R ++Q+ L + L ++ + YEKG L +++ + I F Sbjct: 8 NNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNLFGF 67 Query: 75 --DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSEK 131 +V+ + +++ E+ ++ + L+ IDD K ++ L +++ ++ Sbjct: 68 NREVTIDLPQNLTKEDLKPLEKEFKKENLE-------IDDPKY---YLDKLKKTLTKVQR 117 Query: 132 KYRTIE 137 Y +E Sbjct: 118 SYIELE 123 >gi|149201279|ref|ZP_01878254.1| transcriptional regulator, XRE family with cupin sensor domain [Roseovarius sp. TM1035] gi|149145612|gb|EDM33638.1| transcriptional regulator, XRE family with cupin sensor domain [Roseovarius sp. TM1035] Length = 209 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR RR ++ M+ + L G++ + + E+ L I+ L+ I F Sbjct: 14 LGRRIRKRRQLMSMTLQDLSNGCGVSVSYLSQIERDNAVPTLGTLAEIAAALDVSIDHFI 73 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 S +E T Sbjct: 74 ATPRQADSVTRAETRPQFSISGTS 97 >gi|78187740|ref|YP_375783.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167642|gb|ABB24740.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 390 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 9/94 (9%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + + +G R+R RM LG SQEKL EC G+ + E+G + + + I+ L Sbjct: 6 SDSITRLLGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALH 65 Query: 68 SPISF---------FFDVSPTVCSDISSEENNVM 92 +S F+++ P S ++ E + Sbjct: 66 VTLSDILGTQQLREFYELFPGSFSIMNPEGKVIA 99 >gi|83951709|ref|ZP_00960441.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] gi|83836715|gb|EAP76012.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] Length = 219 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 8/101 (7%) Query: 4 NKKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 K+ P+ + ++ +G+ +R R M+ L E G++ + K E G Sbjct: 13 PKQDPHKITPNKERVLEVAIGREVRSLRQSQRMTVTDLSEATGLSPGMLSKIENGGTSAS 72 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS 96 + L ++ L PI+ FF + + ++ + Sbjct: 73 LTTLVTLARALSVPITDFFKTYEVERGAVHVKAGEGVETVR 113 >gi|326405605|gb|ADZ62676.1| transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis CV56] Length = 107 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ R + +SQE+L + + I+ Q + K+E G + ++ +SE+ + + Sbjct: 1 MEISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTGQIILLSEIFDCSLDT 60 Query: 73 FFDVSPTVCSDISSEENN 90 + E ++ Sbjct: 61 LLKGDKKMEEKAKHEIDD 78 >gi|307947017|ref|ZP_07662352.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307770681|gb|EFO29907.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 207 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 M + P+ V ++ +G+++R R G++ +L + ++ + K E G Sbjct: 1 MTEFFQDPHSVREEREKVLEVAIGRKVRSFRKQRGITVAELSKLTDLSVGMLSKIENGNT 60 Query: 53 RVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 + LQ++S L P++ F I ++ ++ Sbjct: 61 SPSLTTLQNLSRALSVPLTALFKGYEERREAIHTKAGKGVEIERD 105 >gi|291458779|ref|ZP_06598169.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418696|gb|EFE92415.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 183 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+ IR R G++ ++LG+ +G++ ++ YE G L+ +++ L + Sbjct: 1 MTIGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLKSLEALAKALHVNV 58 >gi|255263387|ref|ZP_05342729.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105722|gb|EET48396.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 139 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+SQE L + LGI ++ +E +N A++LQ +S +L + + + Sbjct: 26 GDRVAAAREQAGLSQEALAKQLGIKNGTLRNWEHDLNEPRANKLQMLSGILGVSLMWLLN 85 Query: 76 VSPTVCSDISSEE 88 S E+ Sbjct: 86 GEGDGISAPDQED 98 >gi|71906945|ref|YP_284532.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71846566|gb|AAZ46062.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 273 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R L +SQ +L E +G + QQ+Q+ E G + L+ P+ F Sbjct: 3 NRVQQFRKALKLSQRQLAEAVGTSQQQIQRIESGQIAAKLEMAAKLCAALQKPMEVVFPG 62 Query: 77 SPTVCSDISSEENNVMDF 94 + E N F Sbjct: 63 ATKALKSAEREMNASHTF 80 >gi|326402562|ref|YP_004282643.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325049423|dbj|BAJ79761.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 94 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G +R R+ G+SQE + E +G+ V E+G V L H+++ L+ Sbjct: 2 DIRRIFGANLRHYRLAAGLSQEAVAERMGVDRAHVSSMERGSQNVTLITLWHLADALKIQ 61 Query: 70 ISFFFDVSPTVCSDISSEEN 89 + D +P + S Sbjct: 62 PADLLDTTPKPPVETSRPAR 81 >gi|307286631|ref|ZP_07566721.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306502260|gb|EFM71542.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315152692|gb|EFT96708.1| helix-turn-helix protein [Enterococcus faecalis TX0031] Length = 111 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR +R LG +Q++L E + T Q V ++E V L +S L +P+S F + Sbjct: 10 IREKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLE 66 >gi|271499443|ref|YP_003332468.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|307129761|ref|YP_003881777.1| hypothetical protein Dda3937_03632 [Dickeya dadantii 3937] gi|270342998|gb|ACZ75763.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] gi|306527290|gb|ADM97220.1| hypothetical protein Dda3937_03632 [Dickeya dadantii 3937] Length = 88 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI ++ +YE G++R + ++VL P +F Sbjct: 5 RLKTARLQANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVPECYF 64 Query: 74 FDVSPTVCS 82 + V Sbjct: 65 YTVDDDFAE 73 >gi|228907976|ref|ZP_04071826.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228851642|gb|EEM96446.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 184 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + + F Sbjct: 63 NFFLEDTNTEELVVRANQRKKITF 86 >gi|228921209|ref|ZP_04084538.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838424|gb|EEM83736.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 184 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + + F Sbjct: 63 NFFLEDTNTEELVVRANQRKKITF 86 >gi|46908504|ref|YP_014893.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092432|ref|ZP_00230222.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47096032|ref|ZP_00233634.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499013|ref|ZP_03667362.1| DNA-binding protein [Listeria monocytogenes Finland 1988] gi|224503536|ref|ZP_03671843.1| DNA-binding protein [Listeria monocytogenes FSL R2-561] gi|258611370|ref|ZP_05231528.2| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258612011|ref|ZP_05243634.2| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|258612332|ref|ZP_05270022.2| DNA-binding protein [Listeria monocytogenes F6900] gi|290893622|ref|ZP_06556604.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|293596277|ref|ZP_05230092.2| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|293596748|ref|ZP_05264022.2| DNA-binding protein [Listeria monocytogenes J2818] gi|293597029|ref|ZP_05266697.2| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300763918|ref|ZP_07073914.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL N1-017] gi|46881776|gb|AAT05070.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47015629|gb|EAL06560.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|47019209|gb|EAL09952.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258599219|gb|EEW12544.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258607678|gb|EEW20286.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|258610937|gb|EEW23545.1| DNA-binding protein [Listeria monocytogenes F6900] gi|290556824|gb|EFD90356.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|293584899|gb|EFF96931.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|293592028|gb|EFG00363.1| DNA-binding protein [Listeria monocytogenes J2818] gi|293594334|gb|EFG02095.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|300515259|gb|EFK42310.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL N1-017] gi|332312759|gb|EGJ25854.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 118 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 18/107 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R ++Q++L +G T + KYE +R L ++E+L + F D Sbjct: 7 GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLLD 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + S F I + ++ + +EL Sbjct: 67 DVAGLREKNS------------------VNAFPLIGNPELEKWYLEL 95 >gi|331082015|ref|ZP_08331143.1| hypothetical protein HMPREF0992_00067 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405610|gb|EGG85140.1| hypothetical protein HMPREF0992_00067 [Lachnospiraceae bacterium 6_1_63FAA] Length = 354 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR+ ++QE++ LG+T V K+EKG + + L ++ +LE+ ++ Sbjct: 7 IRQRRIERNLTQEQVANYLGVTAPAVNKWEKGTSYPDITTLPALARILETDLNTLLSFKE 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + N + + +G +I K+R+ Sbjct: 67 ELTEQEIAIFLNTLSELLEKEGFLKV---YEIAMEKIRE 102 >gi|325104601|ref|YP_004274255.1| protein of unknown function DUF955 [Pedobacter saltans DSM 12145] gi|324973449|gb|ADY52433.1| protein of unknown function DUF955 [Pedobacter saltans DSM 12145] Length = 354 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R + R++ G S + L + LG ++ Q + +YEKG A ++ +S+ L +FF Sbjct: 9 ERFKSARLMNGFSLQDLADALGGTLSRQALHRYEKGEVIPDAEKINMLSKALNISPDYFF 68 Query: 75 DVSPTVCSDIS 85 + SDI Sbjct: 69 RTTKVEFSDIE 79 >gi|120435259|ref|YP_860945.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577409|emb|CAL65878.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 95 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R GM+Q++L + I+ + + E + + I + LE P+S+ Sbjct: 1 MEIGSAVKILRKSRGMTQKELADLCDISVNALSQIEINSSFPQKQTIHKICKALEYPVSY 60 Query: 73 --FFDVSPTVCSDISSEENNVMDFISTP 98 FF +S DI E+ V + +++ Sbjct: 61 LLFFSISEE---DIPKEKKVVFNSLNSA 85 >gi|16801490|ref|NP_471758.1| hypothetical protein lin2428 [Listeria innocua Clip11262] gi|289435611|ref|YP_003465483.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|16414950|emb|CAC97655.1| lin2428 [Listeria innocua Clip11262] gi|289171855|emb|CBH28401.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313617561|gb|EFR89887.1| DNA-binding protein [Listeria innocua FSL S4-378] gi|313622678|gb|EFR93041.1| DNA-binding protein [Listeria innocua FSL J1-023] gi|313632189|gb|EFR99260.1| DNA-binding protein [Listeria seeligeri FSL N1-067] gi|313636591|gb|EFS02297.1| DNA-binding protein [Listeria seeligeri FSL S4-171] Length = 115 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D + S F I + ++ + +EL Sbjct: 61 LLDDVAGLREKNS------------------VNAFPLIGNPELEKWYLEL 92 >gi|326800444|ref|YP_004318263.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326551208|gb|ADZ79593.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 112 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 15/117 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE---SP 69 ++GK+IRL R G SQE + + L I+ K E G+ + SRLQ I+++ + Sbjct: 2 KSLGKKIRLLRHQNGWSQEDVAKRLDISIPAFSKIETGITDINLSRLQQIAKLFDMTVVQ 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + F D + E N + ++L ++K+IEL + Sbjct: 62 LLNFNDADEQKKYNSDLEAANKKLQERNNEVIEL------------QKKVIELYEEL 106 >gi|291548990|emb|CBL25252.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 112 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G+ ++ R M+QE + E +G++ Q V K+E G + S L ++++ + Sbjct: 47 KSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGVSV 104 >gi|257053436|ref|YP_003131269.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256692199|gb|ACV12536.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 72 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ RR ++Q +L E +G+T Q + EKG I+ ++ + FD+ Sbjct: 7 IKERREDANLTQAELAEAVGVTRQTILYVEKGEYNPSLELAWRIAREFDTHVEEVFDLPE 66 Query: 79 TVCS 82 T Sbjct: 67 TTHE 70 >gi|227537296|ref|ZP_03967345.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242799|gb|EEI92814.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 354 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R + R++ G S + L + LG ++ Q + +YEKG A ++ +S+ L+ +FF Sbjct: 9 ERFKSARLMNGFSLQDLADALGNKLSRQALHRYEKGEVIPDAEKINMLSKALKVSSDYFF 68 Query: 75 DVSPTVCSDIS 85 + SD+ Sbjct: 69 RTTKVELSDVE 79 >gi|226324115|ref|ZP_03799633.1| hypothetical protein COPCOM_01893 [Coprococcus comes ATCC 27758] gi|225207664|gb|EEG90018.1| hypothetical protein COPCOM_01893 [Coprococcus comes ATCC 27758] Length = 233 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD VG+ IR RM M+ ++L L + V KYEKG + S +S++ + Sbjct: 3 VDEKVGRNIRKYRMAYNMTLKELAVRLHKSVSTVSKYEKGDISLDISTFLELSKIFKVSP 62 >gi|168181353|ref|ZP_02616017.1| MATE efflux family protein [Clostridium botulinum Bf] gi|182675343|gb|EDT87304.1| MATE efflux family protein [Clostridium botulinum Bf] Length = 147 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R G S ++ E G++ + + E + A LQ I+ L +S Sbjct: 1 MKLGEKIRSIRKKKGYSILQIKELTGLSKSTISELENDKSSPTAETLQKIATALNVHVSD 60 Query: 73 FFDVSPTVCSD 83 FF+ S S+ Sbjct: 61 FFNDSKETLSE 71 >gi|160935724|ref|ZP_02083099.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC BAA-613] gi|158441468|gb|EDP19178.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC BAA-613] Length = 194 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG I R GM+Q+ L + I+ + + K+E+G S L+ +S++L I Sbjct: 6 VGNLIYTLRTEKGMTQKALANAMNISDRTISKWERGAGCPDVSLLRELSDILGVNI 61 >gi|148379505|ref|YP_001254046.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932694|ref|YP_001383881.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935321|ref|YP_001387431.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288989|emb|CAL83077.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928738|gb|ABS34238.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931235|gb|ABS36734.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 370 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 4 LLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTIDT 63 Query: 73 FFDVSPTVCSD 83 + + + Sbjct: 64 LLNFKIELSDE 74 >gi|83590661|ref|YP_430670.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573575|gb|ABC20127.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 252 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 4/89 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRIR R G S + L + G++ + + E+G R L ++ L P + Sbjct: 5 GKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPR----E 60 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + G LN Sbjct: 61 QLIETGGEGGLAPGERIRLLRERAGKNLN 89 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 42/102 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R G++Q +L G++ + + E+G + L+ + VL+ +F Sbjct: 138 LGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQPSLKTLERVGAVLDISPCYFI 197 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 V ++ + + P + R ++ ++R Sbjct: 198 ADDAGVDEVLNQMSPELRQLLIEPQVQSVLRLICNCNESELR 239 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+RIRL R G + L E GI+ + + E+G L+ I+ LE P+S Sbjct: 74 GERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKITAALEVPLS 129 >gi|325264449|ref|ZP_08131179.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030111|gb|EGB91396.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 100 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 37/85 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++ R++ ++Q KL + LG+T + YE G+ L IS++ + + Sbjct: 2 VYFGNTLKTLRLLNNLTQAKLAQRLGVTKSVISAYETGLRMPSYDILISISQIFKVTTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + D+S + + ++ Sbjct: 62 LLGLEKKQDLDLSGLTADEIQALTD 86 >gi|229815035|ref|ZP_04445372.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] gi|229809265|gb|EEP45030.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] Length = 155 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G SQE+L + LG++ Q + K+E R + ++++ F S Sbjct: 33 RLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVVKLAQIYRVSTDFILTGS 92 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 +V S V + S P +L+R + Sbjct: 93 ASVPS--------VCETPSAPAPRELSREY 114 >gi|197119614|ref|YP_002140041.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] gi|197088974|gb|ACH40245.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] Length = 110 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P + +G +R R + G SQE+LGE ++++ V + E+G L I+ Sbjct: 2 KNPVAIRQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANA 61 Query: 66 LESPISFFF 74 L PI+ F Sbjct: 62 LTVPIAELF 70 >gi|49479808|ref|YP_035283.1| DNA-binding protein transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331364|gb|AAT62010.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 149 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLSS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|163941236|ref|YP_001646120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863433|gb|ABY44492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 262 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEQSNE 71 >gi|331091208|ref|ZP_08340049.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404655|gb|EGG84194.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] Length = 219 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 4/100 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ R GMSQE+L L + Q V K+E+ ++ A L ++ +LE +S Sbjct: 2 IGENIKKYRRRKGMSQEELAVKLHVVRQTVSKWEQALSVPDAEVLMRMASLLEVSVSTLL 61 Query: 75 --DVSPTVCSDISSEENNVMDFIST--PDGLQLNRYFIQI 110 ++ ++ + + + ++ + + R +I Sbjct: 62 GSEIEDENSEHLTEKLAQLNEQLAEIQREQIVQKRAGEKI 101 >gi|312952949|ref|ZP_07771805.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310629090|gb|EFQ12373.1| helix-turn-helix protein [Enterococcus faecalis TX0102] Length = 109 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ +R LG +Q++L E + T Q V ++E V L +S L +P+S F D Sbjct: 10 IKEKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLDEE 68 >gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685111|gb|ADK28033.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302205396|gb|ADL09738.1| Putative transcription regulator [Corynebacterium pseudotuberculosis C231] gi|302329950|gb|ADL20144.1| Putative transcription regulator [Corynebacterium pseudotuberculosis 1002] gi|308275634|gb|ADO25533.1| Putative transcription regulator [Corynebacterium pseudotuberculosis I19] Length = 475 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L L ++ V + E V + L I+EV +FF Sbjct: 5 YVGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDVRPLTLPVLHRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S V D + + Sbjct: 65 ------SKDDASRLLAEVHDVMLDKE 84 >gi|326791877|ref|YP_004309698.1| hypothetical protein Clole_2801 [Clostridium lentocellum DSM 5427] gi|326542641|gb|ADZ84500.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 159 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 14/111 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ RR LG+SQ++L L + + K E G N + S+++ +E L + S+ Sbjct: 6 RIKERREALGLSQDELALKLNYKSRSTIAKIESGANDIPQSKIKAFAEALNTTTSYLMGW 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVR 124 + E +L + +++D + +++ EL Sbjct: 66 DSEEEQLPTITEKEK----------ELLTNYNKLNDLGKDEAVKRVSELTE 106 >gi|52424167|ref|YP_087304.1| HipB protein [Mannheimia succiniciproducens MBEL55E] gi|52306219|gb|AAU36719.1| HipB protein [Mannheimia succiniciproducens MBEL55E] Length = 159 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFDV 76 R++ R LG++Q ++ + G++ + KYE+GV G+ L ++ + + + Sbjct: 10 RLKNERNRLGLTQAEIAKKCGVSREMWGKYERGVALAGSEVLFSLAAI-GVDMDYILLGT 68 Query: 77 SPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 V +I++E + S GL L + F+Q D R I+ + +++ Sbjct: 69 RKEVFEEITTEALKDMPKADFSDKTGL-LVQLFMQ-CDDNGRAAILSVAQTMAGM 121 >gi|325845864|ref|ZP_08169062.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481770|gb|EGC84802.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 236 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 13/118 (11%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VGK I+ R + ++ E+L + + + + KYE G ++ L I++ L+ + Sbjct: 6 NKEVGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVD 65 Query: 72 -FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV----RQKIIELVR 124 ++ + SD E NV F L ++ + D +V R K+ L + Sbjct: 66 KLLYNDDQILISD---ESKNVPKFFKN-----LTEFYSYMYDGRVNKVIRSKLNILSK 115 >gi|295106127|emb|CBL03670.1| looped-hinge helix DNA binding domain, AbrB family [Gordonibacter pamelaeae 7-10-1-b] Length = 140 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RR +G++QE+L L + Q V K+E G + + ++E L+ + Sbjct: 2 IGSNIQSRRRAIGLTQEQLAAALAVARQTVAKWEAGDSVPDLANAGALAEALDVSLDALV 61 Query: 75 DVSP 78 P Sbjct: 62 GYDP 65 >gi|169335627|ref|ZP_02862820.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis DSM 17244] gi|169258365|gb|EDS72331.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis DSM 17244] Length = 229 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I R SQE L E LG++ Q V K+E ++ +SE+ P + Sbjct: 1 MTIGNKIMTLRRENNFSQEILAEKLGVSRQAVSKWEAEQCLPDIDKIVKLSELFSVPTDY 60 >gi|167038623|ref|YP_001666201.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117014|ref|YP_004187173.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857457|gb|ABY95865.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930105|gb|ADV80790.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 129 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 8/125 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L L ++ + YE G L+ I++ I + + Sbjct: 5 RLKTLRNEKNLTQRELARLLNLSPSTIAMYETGQRFPDPETLKKIADFFNVSIDYLLGRT 64 Query: 78 P-----TVCSDISSEENNVMDFIST-PDGLQLNRYFIQID--DVKVRQKIIELVRSIVSS 129 ++ S++ + +F +T + L F Q K ++II ++++I Sbjct: 65 DIRSPVDEITEAVSDDPELFEFWNTLKEREDLKLLFKQTKKLSPKDIKQIIRIIKAIEDE 124 Query: 130 EKKYR 134 E K Sbjct: 125 EDKGE 129 >gi|116688944|ref|YP_834567.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116647033|gb|ABK07674.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 132 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I +R G++Q KL E + + + V ++E+G RLQ +S+ L + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAVSRWERGTRVPTLHRLQQLSDALNCSVDQLL 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 D + + +D + + + +L F+Q Sbjct: 81 QRGSKRPDDQLAMIADALDGLDSDE-RELVVNFVQ 114 >gi|307544496|ref|YP_003896975.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216520|emb|CBV41790.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 195 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+ +VG R+R R + G+SQ +L + G+T + E+G S L+ I + + Sbjct: 11 DPMADDVGARLRALRNLRGISQRELAKRCGVTHSSLSLIEQGKVSPSVSSLKKILDAIPM 70 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 + FF + + + + D Sbjct: 71 SVGDFFTMDLESRDQVFYSADELAD 95 >gi|307133108|ref|YP_003885124.1| transcriptional regulator [Dickeya dadantii 3937] gi|306530637|gb|ADN00568.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 112 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R++ G+SQ+ LG G + ++ +YEKGV+ + ++E L P+++ Sbjct: 20 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANIVTAKRLAEALNVPLAY 79 Query: 73 FFDVSPTVC 81 F+ + Sbjct: 80 FYADDDNLA 88 >gi|291546039|emb|CBL19147.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 318 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R ++QE+L E G++ + V ++E G+N S L ++E + + Sbjct: 6 IGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSVLVQLAEYYDVEMRELL 65 Query: 75 DVSPTVCSDISSEEN 89 D + + +E Sbjct: 66 DGERSQTMNKDMKET 80 >gi|260185332|ref|ZP_05762806.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis CPHL_A] gi|289446007|ref|ZP_06435751.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289418965|gb|EFD16166.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] Length = 474 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI+ + + V + +S G L R + + R+ I Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKKYR 134 + ++E+++ Sbjct: 119 TAQLAAATEERFS 131 >gi|210613654|ref|ZP_03289813.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] gi|210151084|gb|EEA82092.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] Length = 118 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 39/85 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++IR R MSQ +L E +G+T + E + + +L I+EVL+ + Sbjct: 15 VGRKIRHYREKKKMSQLELAEAIGVTQNTIYLIETAQSEMKLEKLFRIAEVLDVTPNKLL 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S+ E ++M +S D Sbjct: 75 PGEAKTASNKFFEFEHMMKQLSEAD 99 >gi|167751035|ref|ZP_02423162.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702] gi|167655953|gb|EDS00083.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702] Length = 226 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ ++G +I+ R+ ++QE++ E LG++ Q + +E + + +S+ E Sbjct: 6 HGMEHDIGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKSYPDIISVIKMSDCYEV 65 Query: 69 PISFFFDVSPTVCS--DISSEENNVM 92 + + + + D E NV+ Sbjct: 66 SLDYLLKGEQKMKTYYDYLEESTNVV 91 >gi|73663000|ref|YP_301781.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495515|dbj|BAE18836.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 179 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MEIGKKIKNLRNIKKLTQEELAERTDLSKGYISQIESQYASPSMETFLNILEVLGTSPSD 60 Query: 73 FFDVSPTV 80 FF + Sbjct: 61 FFKEPKSE 68 >gi|330467102|ref|YP_004404845.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810073|gb|AEB44245.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 476 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R G++Q +L L I+ + + E + A L +++VL F D Sbjct: 11 AKLRRLRREHGLTQAELARRLDISTSYLNQIENSQRTLTAPILLRLAKVLGVDPEHFADT 70 Query: 77 SPT-VCSDISSEENNVMDFISTP--DGLQLNRYFIQIDDVKVRQKIIEL 122 + +D+ + + +S + ++L R + + ++ L Sbjct: 71 DAERLGADVRTALADEASGVSVDPVEVVELVRDYPTAA-----RALVAL 114 >gi|327466846|gb|EGF12364.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 194 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R GMSQ+ L L + Q + +E G +L ++ + + + Sbjct: 83 ERLKKLRKAAGMSQKNLALKLNTSQQNINYWENGQRNPKREKLIETADFFDVSVDYLLGN 142 Query: 77 SPTVCSDISSEE----NNVMDFISTPD 99 + + + + V DF T + Sbjct: 143 TDEKKPVLETAQILFRKTVDDFNLTKE 169 >gi|324116784|gb|EGC10698.1| peptidase S24 [Escherichia coli E1167] Length = 229 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 5 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWL 62 >gi|322805162|emb|CBZ02726.1| transcriptional regulator [Clostridium botulinum H04402 065] Length = 373 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I +R G++QE+L +G++ V K+E G + L ++ + Sbjct: 4 LNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDILFLPELATYFNISVDE 63 Query: 73 FFDVSPTVCSD 83 SP + + Sbjct: 64 LLGYSPQLTKE 74 >gi|310641032|ref|YP_003945790.1| DNA-binding protein [Paenibacillus polymyxa SC2] gi|309245982|gb|ADO55549.1| DNA-binding protein [Paenibacillus polymyxa SC2] Length = 182 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G + R G+S +K+ E G++ + + EKG + + L I+ L S F Sbjct: 8 IGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGRSNPTVTTLWKIANGLHVSFSTFL 67 Query: 75 DVSPTVCSDI 84 P + I Sbjct: 68 KEDPPQITKI 77 >gi|303242323|ref|ZP_07328809.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590162|gb|EFL59924.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 182 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ RI+ R++ G+S+++ + LG++F QKYE G + + S L I++ ++ Sbjct: 6 RDIAARIKGLRLLSGISEKEAAQKLGLSFADFQKYENGEDDIPISILYEIADFYCVDLT 64 >gi|300855914|ref|YP_003780898.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436029|gb|ADK15796.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 119 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 10/104 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G ++R R G+S ++L + I+ + E G + L+ I+ LE+P+S+ Sbjct: 4 IGTKLRKIRKATGLSLKQLSTKINGKISISFLSDIENGRSNPSFENLKLIAAALETPVSY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF--IQIDDVK 114 F + S + ++ DFI + L + F I+D K Sbjct: 64 FIEDSKDSIFSSTIDD---ADFIH---IINLLQDFKDWNIEDKK 101 >gi|284008333|emb|CBA74709.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 230 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI+ R+ M+Q +L E L +T Q VQ++E +RL I++VL+ +++ Sbjct: 6 ERIKQARLAKKMTQAELAEKLSVTPQSVQQWETST-EPKKNRLMKIADVLDINVNWL 61 >gi|256850687|ref|ZP_05556112.1| rad protein [Lactobacillus crispatus MV-1A-US] gi|256712555|gb|EEU27551.1| rad protein [Lactobacillus crispatus MV-1A-US] Length = 112 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +RI+ R+ +Q+ L E + + V +E G N L+ ++ L+ + Sbjct: 1 MNLAERIKNARINKHYTQKDLAELINVKSTTVSGWELGRNEPSIDTLKKLATKLDVSFDY 60 Query: 73 FFDVSPTVCSDISSEE 88 VS S+IS + Sbjct: 61 LAGVSSHSDSNISDTD 76 >gi|225377083|ref|ZP_03754304.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] gi|225210988|gb|EEG93342.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPIS 71 +++GKR++ R+ G++Q++L + +T + + E+ N L I + L +P Sbjct: 62 MDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNTPSIGTLLDIIQCLGTTPAE 121 Query: 72 FFFDVSPTV 80 FF D P Sbjct: 122 FFTDEEPEQ 130 >gi|215409982|ref|ZP_03418790.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|215444567|ref|ZP_03431319.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289756539|ref|ZP_06515917.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294995970|ref|ZP_06801661.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|298523942|ref|ZP_07011351.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|289712103|gb|EFD76115.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298493736|gb|EFI29030.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|326902291|gb|EGE49224.1| transcriptional regulator [Mycobacterium tuberculosis W-148] Length = 474 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI+ + + V + +S G L R + + R+ I Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKKYR 134 + ++E+++ Sbjct: 119 TAQLAAATEERFS 131 >gi|170723125|ref|YP_001750813.1| putative phage repressor [Pseudomonas putida W619] gi|169761128|gb|ACA74444.1| putative phage repressor [Pseudomonas putida W619] Length = 259 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RIR R+ G++Q L E +GI + + E G + S L I+ ++ Sbjct: 1 MKLSERIRAARLHAGLTQRDLAEKIGIAQTAISQLESGKTQRS-SYLMAIASTCGVSSAW 59 Query: 73 FFDVSPTVCSDISSEENNV 91 + T+ D +S E + Sbjct: 60 LAEGWGTMLRDAASVEAFL 78 >gi|163734643|ref|ZP_02142082.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161392136|gb|EDQ16466.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 218 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R G++ +L GI+ + K E G + LQ ++ L P+ Sbjct: 30 LEVAIGREVRGYRKQQGITVAELSALTGISIGMLSKIENGNTSPSLTTLQTLANALSVPL 89 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + FF + + ++ +G Sbjct: 90 TSFFRRFEESRLAVHTRAGEGVEI--DREG 117 >gi|325569676|ref|ZP_08145723.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] gi|325157232|gb|EGC69397.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] Length = 396 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 4/103 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+ I RR G++Q++L + ++ V K+E G + L ++ + + Sbjct: 1 MDLPIGEEIARRRKHRGVTQQELAAFMNVSKASVSKWETGQTYPDITSLPLLAAYFDCSV 60 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +SP I + + + L L + F + Sbjct: 61 DELLILDSQLSPKEIQRIYQLLKDAFQTKTPTEVLALAQSFTK 103 >gi|293550683|ref|ZP_06673350.1| transcriptional regulator [Enterococcus faecium E1039] gi|291603210|gb|EFF33395.1| transcriptional regulator [Enterococcus faecium E1039] Length = 145 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 +++ R G++ E L E L ++ Q + +E G L+ +S+ P+S+ F + Sbjct: 4 KLKRLRKEHGITHENLAEKLHVSRQTISNWENGNTLPDIENLKLLSQFYHIPLSYLFAEK 63 Query: 77 SPTVCSDISSEENNVMDFI 95 S + S ++ + Sbjct: 64 EEEAFSPLESSNKDLKKLL 82 >gi|212695792|ref|ZP_03303920.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] gi|212677225|gb|EEB36832.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] Length = 236 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 13/118 (11%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VGK I+ R + ++ E+L + + + + KYE G ++ L I++ L+ + Sbjct: 6 NKEVGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVD 65 Query: 72 -FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV----RQKIIELVR 124 ++ + SD E NV F L ++ + D +V R K+ L + Sbjct: 66 KLLYNDDQILISD---ESKNVPKFFKN-----LTEFYSYMYDGRVNKVIRSKLNILSK 115 >gi|238026932|ref|YP_002911163.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237876126|gb|ACR28459.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 189 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 2/103 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LG+S + L E G+T + K E+G++ + +++ L + F Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQLFSAD 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + PD Q + I R++++ Sbjct: 65 GDEQAITVVRADERLRMSRAPDDAQ--SGYEVIAAEAGRKRLL 105 >gi|221195133|ref|ZP_03568189.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221185036|gb|EEE17427.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 244 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R+ +QE+L L ++ Q V K+E +N S L +++ L I Sbjct: 8 LGRRIARLRLAKAATQERLARELSVSPQAVSKWENDINYPDISLLPQLAQFLGVSIDELL 67 Query: 75 DVSPTVC 81 + T Sbjct: 68 RGASTQE 74 >gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] Length = 342 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 58/149 (38%), Gaps = 24/149 (16%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 ++ R ++Q+ L + L ++ + YE G L +++ + I F Sbjct: 8 NNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVEPSIYFLINLANEMNCSIDNLFGF 67 Query: 75 --DVSPTVCSDISSEENNVMDFISTPDGLQL-----------------NRYFIQIDDVKV 115 DVS + +++ E+ ++ + ++ R +I+++ K Sbjct: 68 NRDVSIELPKNLTKEDLKPIEKELKKEDFEIDDPKYYLEKLKKTLLKVQRSYIELEMSKK 127 Query: 116 R--QKIIELVRSIVSSEKKYRTIEEECMV 142 R + ELVR+ + E+++ + E Sbjct: 128 RTDRMYDELVRTF-NREERFEEMLNELTE 155 >gi|160894211|ref|ZP_02074989.1| hypothetical protein CLOL250_01765 [Clostridium sp. L2-50] gi|156864244|gb|EDO57675.1| hypothetical protein CLOL250_01765 [Clostridium sp. L2-50] Length = 203 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R + +SQEKL + + ++ Q + +E + + L +SE+ + + Sbjct: 9 MELGKQIKKHRQEVQLSQEKLADRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDN 68 Query: 73 FFDVSPTVCSDISSEENNV 91 V D+ +E V Sbjct: 69 LIKGDIEVMKDVIQKEEIV 87 >gi|15675391|ref|NP_269565.1| putative repressor [Streptococcus phage 370.2] gi|19746441|ref|NP_607577.1| repressor [Streptococcus pyogenes MGAS8232] gi|21910679|ref|NP_664947.1| putative cI-like repressor - phage associated [Streptococcus pyogenes MGAS315] gi|28876313|ref|NP_795491.1| putative cI-like repressor [Streptococcus pyogenes phage 315.3] gi|28895631|ref|NP_801981.1| repressor (phage associated) [Streptococcus pyogenes SSI-1] gi|13622576|gb|AAK34286.1| putative repressor - phage associated [Streptococcus phage 370.2] gi|19748643|gb|AAL98076.1| putative repressor [Streptococcus pyogenes MGAS8232] gi|21904881|gb|AAM79750.1| putative cI-like repressor - phage-associated [Streptococcus pyogenes phage 315.3] gi|28810880|dbj|BAC63814.1| putative repressor (phage associated) [Streptococcus pyogenes SSI-1] Length = 251 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 12/131 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR R M+Q +L E LG+ T+ V K+EK N L+ ++E+ + Sbjct: 3 QLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKDLKKLAEIFNVTSDY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ + I+ + + ++ + Q++ + ++K++ + + K Sbjct: 63 LLGLTDSKLGKITIQ----------NEQPEIVSIYNQLEQPR-QEKVLNFANEQLEEQNK 111 Query: 133 YRTIEEECMVE 143 +I ++ E Sbjct: 112 TVSIFDKKSEE 122 >gi|150018645|ref|YP_001310899.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905110|gb|ABR35943.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 371 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I +R G++QE+L + +G++ V K+E G++ L ++ + Sbjct: 4 LNIGECIAYKRKEKGVTQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNISVDE 63 Query: 73 FFDVSPTVCSD 83 SP + + Sbjct: 64 LLGYSPQLKKE 74 >gi|229117089|ref|ZP_04246469.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] gi|228666378|gb|EEL21840.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] Length = 262 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEQSNE 71 >gi|222098975|ref|YP_002533543.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] gi|221571365|gb|ACM22177.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] Length = 188 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ G++QE+L E ++ + + E L+ I E L + + Sbjct: 13 VRIGEKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 72 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF EE + Sbjct: 73 FFSDFEEERVVFKKEERVPV 92 >gi|168204997|ref|ZP_02631002.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170663385|gb|EDT16068.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] Length = 180 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATALKLDLKS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 FFD D EE+ + +S Sbjct: 61 FFD-------DTLLEEDYYLKPLS 77 >gi|158320616|ref|YP_001513123.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140815|gb|ABW19127.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 179 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 35/65 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++IR R++ ++Q++L + +T + K E+ + + L + E L + + Sbjct: 1 MDIGEKIRRLRLLNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDLLEALGTDVKK 60 Query: 73 FFDVS 77 FF+ Sbjct: 61 FFNED 65 >gi|296504134|ref|YP_003665834.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|296325186|gb|ADH08114.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 262 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEQSNE 71 >gi|295102948|emb|CBL00492.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 112 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G+ ++ R M+QE + E +G++ Q V K+E G + S L ++++ + Sbjct: 47 KSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGVSV 104 >gi|215402217|ref|ZP_03414398.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289744162|ref|ZP_06503540.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289684690|gb|EFD52178.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] Length = 474 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI+ + + V + +S G L R + + R+ I Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKKYR 134 + ++E+++ Sbjct: 119 TAQLAAATEERFS 131 >gi|325923357|ref|ZP_08185028.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] gi|325546177|gb|EGD17360.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] Length = 94 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R+R R + G+SQ LG G + +V +YE GV++ +Q ++ L+ P+++ Sbjct: 12 RRLREARQVYGLSQRNLGIKAGLDDFVASTRVNRYETGVHQPDLQTIQRLANALDVPVAY 71 Query: 73 FFDVSPTVCS 82 F+ + Sbjct: 72 FYAEEDDLAQ 81 >gi|310659741|ref|YP_003937462.1| BcrR protein [Clostridium sticklandii DSM 519] gi|308826519|emb|CBH22557.1| BcrR [Clostridium sticklandii] Length = 203 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R +QE+L E L I+ V K+E G L++IS + + I Sbjct: 1 MELGEKLQQLRKQNNWTQEQLAEQLYISRTAVSKWESGKGYPSIDSLKNISALFKISIDD 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 V + + NV + Sbjct: 61 LLSGDELVQLATNENKENVENI 82 >gi|254465972|ref|ZP_05079383.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206686880|gb|EDZ47362.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 432 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 32/78 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+ILG+ Q +L GI+ + E R+G L I+ VL S Sbjct: 4 DTLTGSRIRERRLILGLRQAELARKAGISASYLNLIEHNRRRIGGKLLVGIAGVLGVEPS 63 Query: 72 FFFDVSPTVCSDISSEEN 89 + + E Sbjct: 64 MLSEGAEAALISTLREAA 81 >gi|206976191|ref|ZP_03237100.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] gi|206745645|gb|EDZ57043.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] Length = 262 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ENAEQSNE 71 >gi|206968685|ref|ZP_03229640.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] gi|206735726|gb|EDZ52884.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] Length = 262 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEQSNE 71 >gi|226324192|ref|ZP_03799710.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] gi|225207741|gb|EEG90095.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] Length = 169 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 8/108 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L L + Q V K+E G++ +S L ++ L + +S Sbjct: 4 ENIKRIRKSKGLSQEELAIKLNVVRQTVSKWENGLSVPDSSMLIILANELNTTVS----- 58 Query: 77 SPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVK-VRQKIIEL 122 + ++ + + +S + + L I VK +R +I L Sbjct: 59 -ELLGEPVAEPTTDDLKILSEKLEVINLQLAKRSITKVKTIRWILISL 105 >gi|170758715|ref|YP_001786212.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405704|gb|ACA54115.1| HTH domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 381 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I +R G++QE+L +G++ V K+E G++ L ++ + Sbjct: 4 LNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISVDE 63 Query: 73 FFDVSPTVCSD 83 SP + + Sbjct: 64 LLGYSPQLTKE 74 >gi|119487541|ref|ZP_01621151.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] gi|119455710|gb|EAW36846.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] Length = 72 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G IR R G+SQEKL E + + E+G V + I+ L Sbjct: 1 MKHEPRKKLGSNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGERNVSLDNIVAIAHAL 60 Query: 67 ESPISFFFDV 76 P S + Sbjct: 61 GVPASKLLEG 70 >gi|229157204|ref|ZP_04285284.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] gi|228626268|gb|EEK83015.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] Length = 262 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ENAEQSNE 71 >gi|217961038|ref|YP_002339606.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|222097090|ref|YP_002531147.1| helix-turn-helix domain protein [Bacillus cereus Q1] gi|217067952|gb|ACJ82202.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|221241148|gb|ACM13858.1| helix-turn-helix domain protein [Bacillus cereus Q1] Length = 262 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ENAEQSNE 71 >gi|153940476|ref|YP_001390199.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936372|gb|ABS41870.1| DNA-binding protein [Clostridium botulinum F str. Langeland] Length = 373 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I +R G++QE+L +G++ V K+E G++ L ++ + Sbjct: 4 LNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISVDE 63 Query: 73 FFDVSPTVCSD 83 SP + + Sbjct: 64 LLGYSPQLTKE 74 >gi|284008783|emb|CBA75519.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 369 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 8/97 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R+ LG+SQE E G+ YEK A L ++ L +++ Sbjct: 257 VGDRLKSERLRLGLSQEIFAERCGVKKLTQYNYEKSERHPDAGYLIA-AKALGVDLNY-- 313 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 V + +E + +D + + ++ F I Sbjct: 314 -----VMTGERHDEASALDVVRDEEEAEVLTAFRHIP 345 >gi|86748264|ref|YP_484760.1| transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571292|gb|ABD05849.1| transcriptional regulator [Rhodopseudomonas palustris HaA2] Length = 232 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 9/96 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G +IR R +S L I+ + K E G S LQ I+ L P Sbjct: 46 SLERALGAKIRAIRRERDLSVSDLSSASNISAGMMSKIENGQISPSLSTLQSIAGALNVP 105 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +S F +SE+ F+ G+ + R Sbjct: 106 LSLLF---------AASEQRRDCSFVRAKQGVAIER 132 >gi|238927790|ref|ZP_04659550.1| hypothetical protein HMPREF0908_1690 [Selenomonas flueggei ATCC 43531] gi|238884337|gb|EEQ47975.1| hypothetical protein HMPREF0908_1690 [Selenomonas flueggei ATCC 43531] Length = 106 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV--NRVGASRLQHISEVLESPI 70 +G +I R + G+ Q L E +GI+ + + E+G + S L I+E L + Sbjct: 10 KQIGAKIAYYRTLRGLHQVVLAEKIGISSSVLSRIERGKYNKNISISMLLDIAEGLGVDV 69 Query: 71 SFF 73 S F Sbjct: 70 SMF 72 >gi|257438062|ref|ZP_05613817.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] gi|257199393|gb|EEU97677.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] Length = 208 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R G++QE+L E L ++ + K+E G L+ IS I Sbjct: 8 EKLQELRKSRGLTQEELAEALFVSRTAISKWESGRGYPSIDSLKEISRYFSVSID 62 >gi|255262941|ref|ZP_05342283.1| DNA-binding protein [Thalassiobium sp. R2A62] gi|255105276|gb|EET47950.1| DNA-binding protein [Thalassiobium sp. R2A62] Length = 209 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G+ ++ R M+ +L G++ + K E G + LQ +++ L Sbjct: 19 NVLEVAIGREVKGFRRRQNMTVAELSAMTGLSIGMLSKIENGNTSPSLTTLQTLADALTV 78 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST 97 PI+ FF + + ++ Sbjct: 79 PITSFFSGFEEKRMAVHTPAGEGVEMERD 107 >gi|229825438|ref|ZP_04451507.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] gi|229790001|gb|EEP26115.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] Length = 116 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G++Q +L LG+ + YE N +L +S+ + + +S Sbjct: 6 RLKQLRQKKGLTQGELANILGLKPTAISNYESNRNEPSFDKLIALSKEFDVTCDYLLGIS 65 Query: 78 PTVCSDISSE-ENNVMDFI-----STPDGLQLNRYFI 108 + + ++DF P+ R + Sbjct: 66 DSALPIGGEILDKEIVDFFLVYQQLMPESAASVRDYA 102 >gi|227328284|ref|ZP_03832308.1| hypothetical protein PcarcW_13540 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 88 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI ++ +YE G++R + ++VL P +F Sbjct: 5 RLKTARLQANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVPECYF 64 Query: 74 FDVSPTVCS 82 + V Sbjct: 65 YTVDDDFAE 73 >gi|183599591|ref|ZP_02961084.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] gi|188021839|gb|EDU59879.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] Length = 207 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ RIR RR L ++Q +L E GI+ Q ++ E G + + I++ L+S + Sbjct: 1 MSLASRIRQRRQELNLTQTELAEKAGISQQSIESIENGRTK-KPRNIIEIAKALQSHPEW 59 Query: 73 FFDV 76 + Sbjct: 60 LLNG 63 >gi|168750476|ref|ZP_02775498.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|168757678|ref|ZP_02782685.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|168783674|ref|ZP_02808681.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|168802673|ref|ZP_02827680.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|195937964|ref|ZP_03083346.1| phage-related repressor protein [Escherichia coli O157:H7 str. EC4024] gi|208819582|ref|ZP_03259902.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|188015290|gb|EDU53412.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188999040|gb|EDU68026.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355373|gb|EDU73792.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189375389|gb|EDU93805.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208739705|gb|EDZ87387.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] Length = 229 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 5 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWL 62 >gi|39996520|ref|NP_952471.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39983401|gb|AAR34794.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|307634843|gb|ADI84259.2| helix-turn-helix DNA-binding protein, putative [Geobacter sulfurreducens KN400] Length = 142 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N+G ++ R G++Q+ L + G+ + + K E+G L ISE L P+ Sbjct: 4 NIGHALKRLRSERGLTQKDLAALVSGGLDYTYIGKIERGEQLPSLKILIGISEALGVPVG 63 Query: 72 FFFDVSPTVCS 82 FF + Sbjct: 64 IFFGGESAAEA 74 >gi|325289460|ref|YP_004265641.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964861|gb|ADY55640.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 343 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG IR R ++QE++ + LG+T V K+E G + S L I+ +L I Sbjct: 1 MRVGNVIRKYRKDKNLTQEEMAKRLGVTAPAVNKWENGYSLPDISLLSPIARLLNISIDT 60 Query: 73 FF----DVSPTVCSDISSEEN 89 ++S + + E N Sbjct: 61 LLSHEKELSDAEANRLVEEAN 81 >gi|312109734|ref|YP_003988050.1| hypothetical protein GY4MC1_0611 [Geobacillus sp. Y4.1MC1] gi|311214835|gb|ADP73439.1| protein of unknown function DUF955 [Geobacillus sp. Y4.1MC1] Length = 388 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ GM+ +L + +G+T Q V ++E+G + ++ VL+ P FF+ Sbjct: 13 RRLKAARVFRGMTITELADKIGVTRQAVSQFEQGKTPPSLESIFKLTNVLQFPRDFFYAE 72 Query: 77 SPTV 80 +V Sbjct: 73 DKSV 76 >gi|227536492|ref|ZP_03966541.1| hypothetical protein HMPREF0765_0736 [Sphingobacterium spiritivorum ATCC 33300] gi|227243569|gb|EEI93584.1| hypothetical protein HMPREF0765_0736 [Sphingobacterium spiritivorum ATCC 33300] Length = 123 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R ++ EKL E GI ++Q+ E G G S L I++ L+ +SF Sbjct: 58 LGQRVRDLRSERKLTMEKLAELSGIDYRQLSYIELGQTDPGLSTLHAIAKGLDITLSFLM 117 Query: 75 DVSP 78 D Sbjct: 118 DSES 121 >gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 112 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P + + +GK+IR R+ G++QE L E G+ + + E+G L Sbjct: 1 MSQKDKPTFL-VLLGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGEKSPSVETLID 59 Query: 62 ISEVLESPISFFFDVSP 78 IS+ L++ IS+ +V Sbjct: 60 ISKSLDTSISYILNVPD 76 >gi|319938593|ref|ZP_08012980.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319806229|gb|EFW02921.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 114 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQE+L + +G++ Q V K+E + ++ +S+ + Sbjct: 6 RIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYILKGI 65 Query: 78 PTVCS 82 V Sbjct: 66 EPVAD 70 >gi|325678257|ref|ZP_08157885.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110020|gb|EGC04208.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 254 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R G+SQE L + +T Q V ++EKG L+ +S + + I+ Sbjct: 7 IRELRTKAGLSQEDLANKVYVTRQAVSRWEKGETVPSTDTLKLLSALFDVSIN 59 >gi|242240827|ref|YP_002989008.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242132884|gb|ACS87186.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 86 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI ++ +YE G++R + ++VL P +F Sbjct: 5 RLKTARLRANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMICAFAKVLNVPECYF 64 Query: 74 FDVSPTVCS 82 + V Sbjct: 65 YTVDDDFAE 73 >gi|237736495|ref|ZP_04566976.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229421537|gb|EEO36584.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 187 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 7 IPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + D+ +GK+I+ R+ ++ ++L E +G+T + + E+ + + L+ IS+ Sbjct: 1 MKNDILDLGLGKKIQNYRLNKKLTIKELSEKIGMTSSMLSQIERDLVNPSIATLRAISKA 60 Query: 66 LESPISFFF 74 L+ P+ FF Sbjct: 61 LDVPLFMFF 69 >gi|229065719|ref|ZP_04200943.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228715537|gb|EEL67338.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 186 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +INVG++I + R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINVGQKIMVFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + + F Sbjct: 65 NFFLEDTNTEELVVRANQRKKITF 88 >gi|218663328|ref|ZP_03519258.1| probable transcriptional regulator protein, LacI family [Rhizobium etli IE4771] Length = 190 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ G++ + L G++ + + E+ AS L I L +S FF Sbjct: 9 IGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S ++ + P+ Sbjct: 69 AEEGQQASPLARRQE--QQVWRDPE 91 >gi|254390574|ref|ZP_05005789.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294815656|ref|ZP_06774299.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|326444005|ref|ZP_08218739.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704276|gb|EDY50088.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294328255|gb|EFG09898.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] Length = 509 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|29377137|ref|NP_816291.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227519665|ref|ZP_03949714.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227554145|ref|ZP_03984192.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229549226|ref|ZP_04437951.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255971941|ref|ZP_05422527.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256616839|ref|ZP_05473685.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256763285|ref|ZP_05503865.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256853958|ref|ZP_05559323.1| transcriptional regulator [Enterococcus faecalis T8] gi|256957887|ref|ZP_05562058.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256961092|ref|ZP_05565263.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|257079824|ref|ZP_05574185.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|257081830|ref|ZP_05576191.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|257084372|ref|ZP_05578733.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257087629|ref|ZP_05581990.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|257090791|ref|ZP_05585152.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257416836|ref|ZP_05593830.1| helix-turn-helix domain-containing protein [Enterococcus faecalis AR01/DG] gi|257420051|ref|ZP_05597045.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|293384038|ref|ZP_06629932.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386851|ref|ZP_06631421.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294779476|ref|ZP_06744872.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300861098|ref|ZP_07107185.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|307270635|ref|ZP_07551926.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307276897|ref|ZP_07558007.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290339|ref|ZP_07570254.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312900023|ref|ZP_07759340.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312902423|ref|ZP_07761629.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312908012|ref|ZP_07766995.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312953680|ref|ZP_07772517.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978460|ref|ZP_07790198.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29344603|gb|AAO82361.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227072889|gb|EEI10852.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227176771|gb|EEI57743.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229305463|gb|EEN71459.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255962959|gb|EET95435.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256596366|gb|EEU15542.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256684536|gb|EEU24231.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256710901|gb|EEU25944.1| transcriptional regulator [Enterococcus faecalis T8] gi|256948383|gb|EEU65015.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256951588|gb|EEU68220.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|256987854|gb|EEU75156.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|256989860|gb|EEU77162.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256992402|gb|EEU79704.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256995659|gb|EEU82961.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|256999603|gb|EEU86123.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257158664|gb|EEU88624.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ARO1/DG] gi|257161879|gb|EEU91839.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|291078518|gb|EFE15882.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083685|gb|EFE20648.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294453433|gb|EFG21839.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|295113617|emb|CBL32254.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300850137|gb|EFK77887.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|306498532|gb|EFM68034.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506320|gb|EFM75480.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306512945|gb|EFM81586.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310626103|gb|EFQ09386.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310628518|gb|EFQ11801.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310634093|gb|EFQ17376.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288609|gb|EFQ67165.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311292780|gb|EFQ71336.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315025573|gb|EFT37505.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030296|gb|EFT42228.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315032780|gb|EFT44712.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035163|gb|EFT47095.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315143822|gb|EFT87838.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315148623|gb|EFT92639.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315149967|gb|EFT93983.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315151947|gb|EFT95963.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159172|gb|EFU03189.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315162150|gb|EFU06167.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168640|gb|EFU12657.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315170416|gb|EFU14433.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|315173738|gb|EFU17755.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315576252|gb|EFU88443.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579167|gb|EFU91358.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315582897|gb|EFU95088.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|323481583|gb|ADX81022.1| helix-turn-helix/ cupin_2 family protein [Enterococcus faecalis 62] gi|327535878|gb|AEA94712.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 180 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF P + +EE + + + G +L Sbjct: 61 FFSQQPLEQKIVYNEEESTL-YYDEEHGYEL 90 >gi|30263988|ref|NP_846365.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Ames] gi|49186829|ref|YP_030081.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|50196954|ref|YP_052642.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|65321313|ref|ZP_00394272.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165872120|ref|ZP_02216759.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167633504|ref|ZP_02391828.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|167640973|ref|ZP_02399230.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|170688808|ref|ZP_02880012.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|170705742|ref|ZP_02896205.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|177654324|ref|ZP_02936253.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] gi|190566003|ref|ZP_03018922.1| prophage LambdaBa02, repressor protein [Bacillus anthracis Tsiankovskii-I] gi|227816690|ref|YP_002816699.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CDC 684] gi|229604569|ref|YP_002868219.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0248] gi|254683682|ref|ZP_05147542.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CNEVA-9066] gi|254721519|ref|ZP_05183308.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A1055] gi|254736027|ref|ZP_05193733.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Western North America USA6153] gi|254743918|ref|ZP_05201601.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Kruger B] gi|254754303|ref|ZP_05206338.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Vollum] gi|254758006|ref|ZP_05210033.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Australia 94] gi|30258632|gb|AAP27851.1| prophage LambdaBa02, repressor protein [Bacillus phage lambda Ba03] gi|49180756|gb|AAT56132.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|50083016|gb|AAT70150.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164712067|gb|EDR17605.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167511023|gb|EDR86412.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|167530910|gb|EDR93597.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|170129282|gb|EDS98146.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|170667324|gb|EDT18083.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|172080814|gb|EDT65895.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] gi|190562922|gb|EDV16888.1| prophage LambdaBa02, repressor protein [Bacillus anthracis Tsiankovskii-I] gi|227006247|gb|ACP15990.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CDC 684] gi|229268977|gb|ACQ50614.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0248] Length = 122 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 15/126 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--------ITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+RI+L R G++Q+ L + +T + YE G + L IS+VL Sbjct: 4 LGQRIKLSRKKRGLTQDALALKIKEKMDTETKVTKTTISNYETGYSSPSNETLVIISDVL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + S + +F + + + + + + +++++++ Sbjct: 64 NVSVDYLLGRSDDPELNAVQFTELRKEF---NELIDMLEKMPK----EKQDMLLDMMKAA 116 Query: 127 VSSEKK 132 V KK Sbjct: 117 VGHNKK 122 >gi|83594673|ref|YP_428425.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577587|gb|ABC24138.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 125 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R G++Q +L LG + + + +E+G L +++VL + F Sbjct: 6 QIGRKIRTLRERRGLTQSQLASLLGKSGETISNFERGKVVTSIQTLDQMAKVLNVRLMDF 65 Query: 74 FDVSPTVCSD 83 FD +D Sbjct: 66 FDGVAVGAAD 75 >gi|220932927|ref|YP_002509835.1| putative prophage repressor [Halothermothrix orenii H 168] gi|219994237|gb|ACL70840.1| putative prophage repressor [Halothermothrix orenii H 168] Length = 200 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R ++ +LG L ++F + YE+G +L I++ + D Sbjct: 5 GQKLRKLRKEKNLTLRELGNKLNLSFSLLAMYERGERTPSLDKLLLIADFFNVSTDYLLD 64 Query: 76 VSP 78 SP Sbjct: 65 HSP 67 >gi|329940155|ref|ZP_08289437.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] gi|329300981|gb|EGG44877.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] Length = 509 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|328887759|emb|CAJ69818.2| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 382 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+R++ R+ GM+ +L E + Q V YE ++ + + I+ VL P+ FF Sbjct: 7 GERLKKARIYRGMTVAELAERIDCQRQTVSMYENNKSKPNDNNVVKRIARVLGFPVKFFL 66 Query: 75 DVS 77 + Sbjct: 67 ETG 69 >gi|295697327|ref|YP_003590565.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412929|gb|ADG07421.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 181 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 35/80 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++R R G + ++L E ++ + + E+G + I + LE P+ +FF+ Sbjct: 7 KLRRVRQEKGWTIQELAEKCEVSPGLISQVERGRVVPTLTTFWRICQALEVPMHYFFEEQ 66 Query: 78 PTVCSDISSEENNVMDFIST 97 + ++ ++ F + Sbjct: 67 KDESMVVRRDQRKIIHFPGS 86 >gi|295100881|emb|CBK98426.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 168 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 16/121 (13%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I +GK+I+ R + M+QE+L ++ + + E G L I VL Sbjct: 51 MPNADAIALGKQIKAVRKAMKMTQEQLALKSNVSVKYIANIENGKQNPSFDILSSILHVL 110 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S + + ++S E + +L + ++R+ +++ RS+ Sbjct: 111 --PLS----LDSVINPNLSEAE---------RECRELESIYFACP-PEMRKTLLDATRSL 154 Query: 127 V 127 Sbjct: 155 A 155 >gi|225856824|ref|YP_002738335.1| transcriptional regulator [Streptococcus pneumoniae P1031] gi|225726261|gb|ACO22113.1| transcriptional regulator [Streptococcus pneumoniae P1031] Length = 227 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---F 74 +++ +R G+SQ +L LGI+ +E G + + L +SE+ +F F Sbjct: 6 KLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEIFNVDPRYFESEF 65 Query: 75 DVSPT 79 ++ T Sbjct: 66 EIVET 70 >gi|222152205|ref|YP_002561380.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113016|emb|CAR40321.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 135 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +SQE L E L I+ Q + K+E G L ++E+ + + Sbjct: 6 SQLKILRQAKNLSQEALAEQLFISRQAISKWENGDATPDLENLVKLAEIFKVSLDELVLG 65 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + E++ + ++ + Sbjct: 66 KKIDSNQDDEEDDENLHLLTNRE 88 >gi|183600843|ref|ZP_02962336.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827] gi|188019628|gb|EDU57668.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827] Length = 234 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R G++Q +L + +G++ +QK E G RL IS+ L + Sbjct: 7 QRLKQARKNAGITQNELAKLVGVSQAAIQKIETGKAATST-RLIEISKALNVDPEWL 62 >gi|167461704|ref|ZP_02326793.1| Transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384015|ref|ZP_08057743.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae B-3650] gi|321151382|gb|EFX44571.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae B-3650] Length = 152 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GK I+ R +SQE+L + + + + K E+G+ L +++ L + + Sbjct: 8 IHIGKIIKQLRQKYKLSQEELAKGI-CSQAHISKIERGIQFPSGVMLYLLAQKLRISVDY 66 Query: 73 FFDVSPTVCS 82 F+ Sbjct: 67 LFNPENAAED 76 >gi|30019187|ref|NP_830818.1| transcriptional repressor [Bacillus cereus ATCC 14579] gi|229108598|ref|ZP_04238210.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] gi|229126443|ref|ZP_04255458.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|229143741|ref|ZP_04272162.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|29894730|gb|AAP08019.1| Transcriptional repressor [Bacillus cereus ATCC 14579] gi|228639694|gb|EEK96103.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|228657023|gb|EEL12846.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|228674853|gb|EEL30085.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] Length = 149 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + I + + Sbjct: 65 DEELTQKIIEDSKQLA 80 >gi|304409163|ref|ZP_07390784.1| putative phage repressor [Shewanella baltica OS183] gi|307303166|ref|ZP_07582921.1| putative phage repressor [Shewanella baltica BA175] gi|304352984|gb|EFM17381.1| putative phage repressor [Shewanella baltica OS183] gi|306913526|gb|EFN43948.1| putative phage repressor [Shewanella baltica BA175] Length = 233 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R + RR + ++Q +L + +G++ + ++E G L +++ L+ + Sbjct: 2 KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61 Query: 73 F-FDVSPTVCSDISSEE 88 F S S+ E Sbjct: 62 LMFGDSKNTKKPESNAE 78 >gi|320006892|gb|ADW01742.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 202 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 5/93 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G++ L E GI+ + + E G R L I+ E P+ Sbjct: 21 VGPRLRRLRKDRGVTLAALSEATGISVSTLSRLESGGRRPSLELLLPIARAHEVPLDDLV 80 Query: 75 DVSPTV-----CSDISSEENNVMDFISTPDGLQ 102 P I + S P GLQ Sbjct: 81 GAPPVSDPRVRAKPIVHGSRTSLPLTSRPGGLQ 113 >gi|253754652|ref|YP_003027792.1| DNA-binding protein [Streptococcus suis BM407] gi|251817116|emb|CAZ54837.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 119 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++IR+ R +SQ++L E L I+ Q V ++E G +L ++E+ + + Sbjct: 2 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSEWENGEATPDIDKLVQLAEIFGVSLDY 61 Query: 73 F 73 Sbjct: 62 L 62 >gi|228984922|ref|ZP_04145092.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774872|gb|EEM23268.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 181 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK++ +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKLEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|218896089|ref|YP_002444500.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842] gi|228964096|ref|ZP_04125221.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis serovar sotto str. T04001] gi|218544124|gb|ACK96518.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842] gi|228795583|gb|EEM43065.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis serovar sotto str. T04001] Length = 149 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ + I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKKLA 80 >gi|160876601|ref|YP_001555917.1| putative phage repressor [Shewanella baltica OS195] gi|160862123|gb|ABX50657.1| putative phage repressor [Shewanella baltica OS195] gi|315268797|gb|ADT95650.1| putative phage repressor [Shewanella baltica OS678] Length = 229 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ RR LG +Q + + +G+T V +E G L +++ L + Sbjct: 4 ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYLLFG 63 Query: 77 SPTVCSDISSE 87 + + ++E Sbjct: 64 NKETKPESNAE 74 >gi|153001880|ref|YP_001367561.1| putative phage repressor [Shewanella baltica OS185] gi|151366498|gb|ABS09498.1| putative phage repressor [Shewanella baltica OS185] Length = 229 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ RR LG +Q + + +G+T V +E G L +++ L + Sbjct: 4 ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYLLFG 63 Query: 77 SPTVCSDISSE 87 + + ++E Sbjct: 64 NKETKPESNAE 74 >gi|160875134|ref|YP_001554450.1| putative phage repressor [Shewanella baltica OS195] gi|160860656|gb|ABX49190.1| putative phage repressor [Shewanella baltica OS195] gi|315267325|gb|ADT94178.1| putative phage repressor [Shewanella baltica OS678] Length = 233 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R + RR + ++Q +L + +G++ + ++E G L +++ L+ + Sbjct: 2 KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61 Query: 73 F-FDVSPTVCSDISSEE 88 F S S+ E Sbjct: 62 LMFGDSKNTKKPESNAE 78 >gi|58699195|ref|ZP_00374007.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534291|gb|EAL58478.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 147 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 13/117 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R++ G +Q +L +G+T+Q+V YE G + L I+ VL Sbjct: 29 IGQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLL 88 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 V D +E + L L + + ++ K+ + + LVR + SEK Sbjct: 89 PEPVIVREDSYEDE----------EILYLTKIY---ENQKLGKIVPSLVRFVHISEK 132 >gi|330819769|ref|YP_004348631.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] gi|327371764|gb|AEA63119.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] Length = 189 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D +G RIR R G S L E G++ + K E+G + A+ L ++ Sbjct: 6 DDIDHRIGARIRAERESRGWSLTNLAENSGVSRAMIHKIERGESSPTATSLAKLAGAFNL 65 Query: 69 PIS 71 +S Sbjct: 66 SMS 68 >gi|314933295|ref|ZP_07840660.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] gi|313653445|gb|EFS17202.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] Length = 179 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++R R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSASD 60 Query: 73 FFDVSPT 79 FF SP+ Sbjct: 61 FFQESPS 67 >gi|228938260|ref|ZP_04100874.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971138|ref|ZP_04131770.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977747|ref|ZP_04138132.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis Bt407] gi|228781955|gb|EEM30148.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis Bt407] gi|228788564|gb|EEM36511.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821396|gb|EEM67407.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938767|gb|AEA14663.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 149 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DKELTQKVIEDSKQLA 80 >gi|196044284|ref|ZP_03111520.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225862972|ref|YP_002748350.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|229183334|ref|ZP_04310562.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] gi|196024923|gb|EDX63594.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225790632|gb|ACO30849.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228600118|gb|EEK57710.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] Length = 149 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|95929663|ref|ZP_01312405.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95134360|gb|EAT16017.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 176 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R G++ + + G + + + E + L +SE + I +FF Sbjct: 5 IGTKIRELRKNRGITLQYVANQTGFSAALISQIENNNITPPIATLARLSEFFDVKIGYFF 64 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 65 EDEALARYEV 74 >gi|15607606|ref|NP_214979.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839854|ref|NP_334891.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|148660231|ref|YP_001281754.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148821663|ref|YP_001286417.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167970715|ref|ZP_02552992.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|253797392|ref|YP_003030393.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254230812|ref|ZP_04924139.1| hypothetical protein TBCG_00456 [Mycobacterium tuberculosis C] gi|254363429|ref|ZP_04979475.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|254549412|ref|ZP_05139859.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289552715|ref|ZP_06441925.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|297632949|ref|ZP_06950729.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297729924|ref|ZP_06959042.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|306774562|ref|ZP_07412899.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306779310|ref|ZP_07417647.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306783100|ref|ZP_07421422.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306787468|ref|ZP_07425790.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792019|ref|ZP_07430321.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306796205|ref|ZP_07434507.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306802063|ref|ZP_07438731.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306806274|ref|ZP_07442942.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306966470|ref|ZP_07479131.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306970666|ref|ZP_07483327.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307078390|ref|ZP_07487560.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307082949|ref|ZP_07492062.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657253|ref|ZP_07814133.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|81669529|sp|O53750|Y465_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator Rv0465c/MT0481 gi|2909541|emb|CAA17420.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13879988|gb|AAK44705.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|124599871|gb|EAY58881.1| hypothetical protein TBCG_00456 [Mycobacterium tuberculosis C] gi|134148943|gb|EBA40988.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148504383|gb|ABQ72192.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148720190|gb|ABR04815.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|253318895|gb|ACT23498.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289437347|gb|EFD19840.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|308216911|gb|EFO76310.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308327755|gb|EFP16606.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308332117|gb|EFP20968.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308335845|gb|EFP24696.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339508|gb|EFP28359.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308343374|gb|EFP32225.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308347283|gb|EFP36134.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308351213|gb|EFP40064.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308355866|gb|EFP44717.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308359787|gb|EFP48638.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308363727|gb|EFP52578.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308367383|gb|EFP56234.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323721139|gb|EGB30201.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|328457178|gb|AEB02601.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 474 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 18/119 (15%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQ-----LNRYFIQIDDVKV 115 T DI+ + + V + +S GL L+R + +I ++ Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRY-RITTAQL 122 >gi|331650592|ref|ZP_08351661.1| putative transcriptional regulator [Escherichia coli M605] gi|323948704|gb|EGB44608.1| helix-turn-helix protein [Escherichia coli H252] gi|331040563|gb|EGI12724.1| putative transcriptional regulator [Escherichia coli M605] Length = 121 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 16/120 (13%) Query: 17 KRIRLRRMILGMSQEKLGECLGI-----TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 KR++ RM G+SQEKL + LG+ T + YE G ++ I+E+L+ P + Sbjct: 4 KRLKEARMEAGLSQEKLSQLLGVAEGINTRSRFSSYEVGRTEPPFKLVKKIAELLDYPEN 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL--VRSIVSS 129 +F+ V+DF +LN + +V+ R+ +L V+ IV+ Sbjct: 64 YFYTEDDDFA-------KAVLDFHRKRTSPELNPNYDS--EVEARRMASKLDNVKKIVAQ 114 >gi|326791705|ref|YP_004309526.1| hypothetical protein Clole_2627 [Clostridium lentocellum DSM 5427] gi|326542469|gb|ADZ84328.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 176 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R L ++Q++L + LGI ++KYEKG ++ ++ L+ + Sbjct: 2 LGNNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGEREPNLETIEKLAVTLKVTP---Y 58 Query: 75 DVSPTVCSDISSEENNVMD 93 ++ + + ++ + + Sbjct: 59 ELLGNLNNSVALNHAPMAE 77 >gi|228951504|ref|ZP_04113610.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808211|gb|EEM54724.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 149 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYLSIEIIIHLSDLFGITIDELLRG 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|238852875|ref|ZP_04643280.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] gi|238834569|gb|EEQ26801.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] Length = 335 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++SE+ + Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI--DDVKVRQKIIELV 123 + + N+ D +L R ++ + K R I L+ Sbjct: 61 LLKSGEPSFEFKNEDINDKDKLPVLSD--ELVRKYLTASRKNAKFRALAIALI 111 >gi|284038170|ref|YP_003388100.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283817463|gb|ADB39301.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 67 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R G++Q + G+ LG++ V YE G + L+ ++ L Sbjct: 6 KQVGQRIKEARNQKGITQREFGKMLGVSHTTVNGYETGKQNLTLDTLEKVAAALGMAPKS 65 Query: 73 F 73 F Sbjct: 66 F 66 >gi|229815067|ref|ZP_04445404.1| hypothetical protein COLINT_02109 [Collinsella intestinalis DSM 13280] gi|229809297|gb|EEP45062.1| hypothetical protein COLINT_02109 [Collinsella intestinalis DSM 13280] Length = 206 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +I+ RR +G+SQE+L E L ++ Q + +E+ L +S + ++ I Sbjct: 1 MDISNQIKTRREAMGLSQEQLAEKLYVSRQTISNWERDKTYPDVQSLLMLSVLFDTSIDT 60 Query: 73 FFDVSPTVCSDISSEEN 89 TV + + Sbjct: 61 LVKGDVTVMEEAVERDR 77 >gi|325662288|ref|ZP_08150903.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086094|ref|ZP_08335177.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471540|gb|EGC74761.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407017|gb|EGG86522.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 192 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 41/88 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R + + L E G++ + ++E+G+ + L+ I++VLE +S FF Sbjct: 7 IGFRIKELRTEKKYTLKYLSEQTGLSIGFLSQFERGLTSIAIDSLEKIAQVLEVELSSFF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 D+S + + + ++ Sbjct: 67 DLSSPQETKYVVRSYEKETTLVNSEIIE 94 >gi|254828889|ref|ZP_05233576.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|255028672|ref|ZP_05300623.1| transcription regulator, putative [Listeria monocytogenes LO28] gi|258601302|gb|EEW14627.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] Length = 157 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|167580903|ref|ZP_02373777.1| transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 132 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 9/112 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I +R G++Q KL E + + + + ++E+G RLQ +S+ L+ + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALDCSVDQLL 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI--------DDVKVRQK 118 D + + +D + + +L F+Q K R++ Sbjct: 81 QRGSKRPDDQLAMIADALDGLDGDE-RELVVNFVQQFADMLKARRSPKHRRR 131 >gi|94990056|ref|YP_598156.1| Cro/CI family transcriptional regulator [Streptococcus phage 10270.1] gi|94990314|ref|YP_598414.1| Cro/CI family transcriptional regulator [Streptococcus phage 10270.2] gi|94994236|ref|YP_602334.1| Cro/CI family transcriptional regulator [Streptococcus phage 10750.2] gi|94543564|gb|ABF33612.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10270.1] gi|94543822|gb|ABF33870.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10270.2] gi|94547744|gb|ABF37790.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10750.2] Length = 104 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++Q+ L E + + ++ +Q++E +++ + Q +++ + +++ Sbjct: 2 NRIKELRKEKGLTQQDLAEEIYVHYRTIQRWEN-KHKIALDQAQLLADYFDVSVAYLLGY 60 Query: 77 SPTVCSD 83 S T + Sbjct: 61 SDTTKDN 67 >gi|81428935|ref|YP_395935.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610577|emb|CAI55628.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 287 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R+ G SQ L + L ++ Q + K+E + + L ++++ ++ Sbjct: 1 MLIGQRLKQFRLGAGYSQRTLADKLNVSRQVISKWETDKSVPDLNLLVGLAQLYNVSLTE 60 Query: 73 FFDVSPTVCSD 83 DV S Sbjct: 61 LLDVETVTKSG 71 >gi|328958487|ref|YP_004375873.1| conserved hypothetical protein; possible transcriptional regulator [Carnobacterium sp. 17-4] gi|328674811|gb|AEB30857.1| conserved hypothetical protein; possible transcriptional regulator [Carnobacterium sp. 17-4] Length = 183 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 10/114 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +G+R++ R+ G SQ + E L I+ Q + K+E G L Sbjct: 1 MIEENNQEGERHMALGERLKESRVSKGFSQGDVAEHLQISRQSISKWETGNGYPDLDNLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE----------NNVMDFISTPDGLQLN 104 +S E I + + + I E + + F+ +GL L Sbjct: 61 KLSVYYEVSIDDLLKENQKLKNKIHENEIKIEENHQKLDFIRGFVEKDEGLLLL 114 >gi|270291965|ref|ZP_06198180.1| conserved hypothetical protein [Streptococcus sp. M143] gi|270279493|gb|EFA25335.1| conserved hypothetical protein [Streptococcus sp. M143] Length = 165 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 5 EKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLLLD 64 Query: 75 DVSPTVCSDISSEEN 89 + S + + EE+ Sbjct: 65 ENSEKASTAVILEED 79 >gi|25027261|ref|NP_737315.1| hypothetical protein CE0705 [Corynebacterium efficiens YS-314] gi|23492542|dbj|BAC17515.1| hypothetical protein [Corynebacterium efficiens YS-314] Length = 169 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLES 68 +G R+R R I G SQE+L E + ++ + E+ N S + +S L+ Sbjct: 54 LGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDV 113 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 P + I +E+ +D Sbjct: 114 PPAALLPAVGEKPQGICVDESLPVD 138 >gi|172058533|ref|YP_001814993.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991054|gb|ACB61976.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 181 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +I+ R+ G++QE+LGE ++ + + E+ ++ L + EVL Sbjct: 2 RTIGNKIKNLRLQKGLTQEELGERTDLSKGYISQIEREISSPSIETLFSLLEVLGISAKD 61 Query: 73 FFDVS 77 FFD Sbjct: 62 FFDED 66 >gi|326941347|gb|AEA17243.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 262 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEQSNE 71 >gi|299821483|ref|ZP_07053371.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299817148|gb|EFI84384.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 180 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKKIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIVTLFDILEVLGSSPKA 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHTQKVIYGE 75 >gi|229114588|ref|ZP_04244002.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] gi|228668653|gb|EEL24081.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] Length = 149 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|224542166|ref|ZP_03682705.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] gi|224524934|gb|EEF94039.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] Length = 121 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 12/104 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K +++ R G++QE + E L + Q + K+EKG++ A L ++E+L+ +S Sbjct: 2 LSKNLKIFRKRKGLTQENVAEALNVVRQTISKWEKGISVPDADMLIKLAEILDVSVS--- 58 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + SD++ E+N D I+ ++L R Q+ R K Sbjct: 59 ---KLIGSDVADEKNE--DMIA----VELARVVEQLASRNRRSK 93 >gi|118587212|ref|ZP_01544640.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118432354|gb|EAV39092.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 199 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R LGM+Q+++ E L ++ Q + +EKG N L +S++ + + Sbjct: 14 ISSKRRELGMTQDQVAELLHVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDVLIKGDK 73 Query: 79 TVCSDISSEENNV 91 V + + ++ Sbjct: 74 EVMKKVQEDSQDL 86 >gi|83859577|ref|ZP_00953097.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] gi|83851936|gb|EAP89790.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] Length = 75 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M + +I N RIR R G M+Q +L +G+T Q V E+G Sbjct: 1 MAKSTQIKN--------RIRELRFHAGEMTQAELARRIGVTRQTVLAIEQGKYSPSLEVA 52 Query: 60 QHISEVLESPISFFFDVSPT 79 I+EV ++P++ F+ +P Sbjct: 53 FQIAEVFKTPLTDVFEYAPD 72 >gi|294498728|ref|YP_003562428.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294348665|gb|ADE68994.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 282 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R + G++Q++L + T Q+ K E G + L IS+ L +++FFD Sbjct: 1 MRDLRKMAGLTQQELSRDI-CTQAQISKIENGEEYPSSITLYKISKRLGVDVNYFFDSVE 59 Query: 79 TVCSD 83 + D Sbjct: 60 SPRLD 64 >gi|229197740|ref|ZP_04324459.1| Helix-turn-helix domain protein [Bacillus cereus m1293] gi|228585685|gb|EEK43784.1| Helix-turn-helix domain protein [Bacillus cereus m1293] Length = 262 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEQSNE 71 >gi|268592470|ref|ZP_06126691.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gi|291311872|gb|EFE52325.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 354 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R++ R G+S ++L G++ ++KYE + + L +S L +FF Sbjct: 3 GERLKRARSAAGLSMKELSLRAGVSANMIKKYEHDESMPSSGVLIKMSRALGVRNEYFF 61 >gi|149187669|ref|ZP_01865966.1| probable transcriptional regulator [Vibrio shilonii AK1] gi|148838549|gb|EDL55489.1| probable transcriptional regulator [Vibrio shilonii AK1] Length = 180 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 10/102 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGK+++ R + GMSQ +L + G+T + + E+ + L+ I + + + Sbjct: 1 MDVGKQLKTIRTMRGMSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF----------ISTPDGLQLN 104 FF + DI + D + +G QL Sbjct: 61 FFTLDVEPKDDIFFSAEQMADLGDGQIKMLLVGAKREGRQLA 102 >gi|331648293|ref|ZP_08349382.1| transciptional regulator [Escherichia coli M605] gi|331042842|gb|EGI14983.1| transciptional regulator [Escherichia coli M605] Length = 230 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R + ++Q+ L + +G+T + ++E G L +++E L + Sbjct: 5 RIREARRNVHLTQDALAKRIGLTKATISQWESGNTTPNGKNLINLAEALNVSPEWLLSGK 64 Query: 78 PTVCSDISSEENNVMDF 94 + +I S F Sbjct: 65 TSDTKEIHSNAQVEGGF 81 >gi|260853764|ref|YP_003227655.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|293403667|ref|ZP_06647758.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298379279|ref|ZP_06989160.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|300903179|ref|ZP_07121111.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300929088|ref|ZP_07144582.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|301019699|ref|ZP_07183852.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|301301704|ref|ZP_07207839.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|257752413|dbj|BAI23915.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291429520|gb|EFF02540.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280392|gb|EFI21896.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|299882087|gb|EFI90298.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|300404794|gb|EFJ88332.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300462961|gb|EFK26454.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|300843201|gb|EFK70961.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|315252878|gb|EFU32846.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] gi|323965045|gb|EGB60506.1| peptidase S24 [Escherichia coli M863] Length = 229 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 5 LSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWL 62 >gi|67078283|ref|YP_245903.1| transcriptional regulator [Bacillus cereus E33L] gi|66970589|gb|AAY60565.1| transcriptional regulator [Bacillus cereus E33L] Length = 66 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ L MSQE L +G+ + + E G I++VL++PI F Sbjct: 6 RMKEYRVRLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLF 62 >gi|315304464|ref|ZP_07874746.1| DNA-binding protein [Listeria ivanovii FSL F6-596] gi|313627167|gb|EFR96018.1| DNA-binding protein [Listeria ivanovii FSL F6-596] Length = 118 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 18/107 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R ++Q++L +G T + KYE +R L ++E+L + F D Sbjct: 7 GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLLD 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + S F I + ++ + +EL Sbjct: 67 DVAGLREKNS------------------VNAFPLIGNPELEKWYLEL 95 >gi|261344510|ref|ZP_05972154.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567420|gb|EFB72955.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 79 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG RI R I G S + +GI+ QQ +YE+G+NR+ RL Sbjct: 6 PISKLVGDRILYYRKIQGASLLDVSIVIGISEQQQSRYERGINRISLDRLAQY------- 58 Query: 70 ISFF 73 +S+F Sbjct: 59 VSYF 62 >gi|300770604|ref|ZP_07080483.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] gi|300763080|gb|EFK59897.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] Length = 96 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR++R L +SQE + L ++ K E+G +V ++ I+ + + Sbjct: 1 MEIGEYIRIKRENLKVSQEAVAFKLDMSQAAYSKIERGETKVKVDQVYKIAHLFGISV-- 58 Query: 73 FFDVSPTVCSDISSEEN 89 +++ P + ++EN Sbjct: 59 -YELLPPSLASDVTKEN 74 >gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1199 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R + G++Q +L E G++ + K E+G + + S L + F Sbjct: 11 GRRLRHVRRLCGLTQARLAERSGVSLEHCNKIERGAAAPSLAVIHAFSRALGVEPATLF- 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 + +D + E + GL L Sbjct: 70 LPERDAADEAGEAGIDWAAVHGRQGLFL 97 >gi|145294487|ref|YP_001137308.1| hypothetical protein cgR_0442 [Corynebacterium glutamicum R] gi|140844407|dbj|BAF53406.1| hypothetical protein [Corynebacterium glutamicum R] Length = 474 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 24/135 (17%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-RQKIIE-------LVRS 125 D S V D + + I+ V Q++ E L R+ Sbjct: 65 ------SRDDDSRLLAEVQDVMLDRE----------INPANVELQELSEMVYNHPQLARA 108 Query: 126 IVSSEKKYRTIEEEC 140 +V ++YR + ++ Sbjct: 109 MVEMHQRYRNVRDKL 123 >gi|118472418|ref|YP_885545.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118173705|gb|ABK74601.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 201 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 7/97 (7%) Query: 4 NKKIPNP----VDI---NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 K PN VD ++G RIR+ R ++ E+L E G++ + + E+G Sbjct: 2 GKAKPNDNKALVDAMLGDLGSRIRMLRKERQLTTERLAETAGVSAGLISQIERGNGNPSF 61 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + L ++ L+ PI + + + E +D Sbjct: 62 ATLVQLAHGLQMPIGQLLEAPESKSVVVRKNERRRLD 98 >gi|254555732|ref|YP_003062149.1| transcriptional regulator, xre family [Lactobacillus plantarum JDM1] gi|254044659|gb|ACT61452.1| transcriptional regulator, xre family [Lactobacillus plantarum JDM1] Length = 221 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+ ++L+R LG++Q+ L + L +T Q V ++E G L +S+ L+ + Sbjct: 1 MELGQALKLQREALGLTQQVLADQLHVTRQTVSRWENGSTYPNLDTLVELSDRLQISLD 59 >gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 354 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 ++ R ++Q+ L + L ++ + YEKG L +++ + I F Sbjct: 8 NNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNLFGF 67 Query: 75 --DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSEK 131 +V+ + +++ E+ ++ + L+ IDD K ++ L +++ ++ Sbjct: 68 NREVTIDLPQNLTKEDLKPLEKEFKKENLE-------IDDPKY---YLDKLKKTLTKVQR 117 Query: 132 KYRTIE 137 Y +E Sbjct: 118 SYIELE 123 >gi|83593946|ref|YP_427698.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576860|gb|ABC23411.1| Transcriptional Regulator, XRE family with Cupin sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 248 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ +R R G+S ++L + G++ + + E G + + L I+ L+ P S F Sbjct: 68 VGENLRRLRTGRGLSLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALDVPFSAF 126 >gi|331085520|ref|ZP_08334605.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407758|gb|EGG87256.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 134 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E +G+T + V K+E+ ++ S + ++E+L + Sbjct: 6 LGVMIASIRKERGMTQLELAEKMGVTDKAVSKWERDLSCPDVSSIPQLAEILGVSVDELM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 V +S ++N+ I T Sbjct: 66 QVKDITKE--TSSQDNIKGIIDTA 87 >gi|319647196|ref|ZP_08001418.1| immunity repressor protein [Bacillus sp. BT1B_CT2] gi|317390543|gb|EFV71348.1| immunity repressor protein [Bacillus sp. BT1B_CT2] Length = 147 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R G +Q +L E ++ V E+ L I++ L P+S Sbjct: 1 MSVGQRLKYWRKQKGYTQAQLAEKANMSRSYVADVERDRYNPSVETLSSIAKALNIPVSN 60 Query: 73 FFDVSPTVCSDISSE 87 + + + S+ E Sbjct: 61 LLEDNQRLVSESPEE 75 >gi|312864338|ref|ZP_07724571.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100059|gb|EFQ58270.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 291 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R LG SQEKL E L ++ Q + K+E G S LQ I+++ + + D+ Sbjct: 7 LRHYRKELGFSQEKLAEKLHVSRQAITKWETGGGLPDISNLQAIAQLFQISLD---DLLA 63 Query: 79 TVCSDISSEENNVMDFIS 96 S I ++ + S Sbjct: 64 ESASPIEPKDFLYQSYTS 81 >gi|310778021|ref|YP_003966354.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] gi|309747344|gb|ADO82006.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] Length = 182 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RI+ R G+S L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 1 MSLGERIKKNRNEKGLSLRDLAGRVDLSASFLSQIEQGKASPSIENLKKIANCLDVRVSY 60 Query: 73 FFDVSPTVCS 82 + + Sbjct: 61 LIEDDEVKKN 70 >gi|294617175|ref|ZP_06696830.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] gi|291596575|gb|EFF27813.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] Length = 221 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|293567401|ref|ZP_06678750.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] gi|291589918|gb|EFF21717.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] Length = 221 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|229095638|ref|ZP_04226619.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] gi|228687770|gb|EEL41667.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] Length = 149 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|227532834|ref|ZP_03962883.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189538|gb|EEI69605.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 185 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G R++ R GM+Q +L + L ++ + V +E G N+ + ++ + + Sbjct: 3 DLSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVD 62 Query: 72 FF 73 Sbjct: 63 DL 64 >gi|126700545|ref|YP_001089442.1| putative phage DNA-binding protein [Clostridium difficile 630] Length = 387 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+R++ R+ GM+ +L E + Q V YE ++ + + I+ VL P+ FF Sbjct: 12 GERLKKARIYRGMTVAELAERIDCQRQTVSMYENNKSKPNDNNVVKRIARVLGFPVKFFL 71 Query: 75 DVS 77 + Sbjct: 72 ETG 74 >gi|42782702|ref|NP_979949.1| helix-turn-helix domain-containing protein [Bacillus cereus ATCC 10987] gi|42738628|gb|AAS42557.1| helix-turn-helix domain protein [Bacillus cereus ATCC 10987] Length = 262 Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEQSNE 71 >gi|251778650|ref|ZP_04821570.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082965|gb|EES48855.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 96 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R G++Q++L E + ++ V YE S L IS+ + + Sbjct: 2 LGDRIKSLRKEQGITQDQLAEYINVSRSSVNGYENDGVEPSLSVLVKISDRFNVSLDYLL 61 Query: 75 DVSPTVCS 82 + + + Sbjct: 62 ERTEEKHN 69 >gi|229544959|ref|ZP_04433684.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|307287527|ref|ZP_07567570.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|229309851|gb|EEN75838.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|306501265|gb|EFM70568.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315164925|gb|EFU08942.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 180 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF P + +EE + + + G +L Sbjct: 61 FFSQQPLEQKIVYNEEESTL-YYDEEHGYEL 90 >gi|212634305|ref|YP_002310830.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212555789|gb|ACJ28243.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 328 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE L E + ++ Q V K+E + +R+ ++E+ E F Sbjct: 6 KIIRLRKQCGWSQEDLAEKMNVSRQSVSKWESANSIPDLNRIITLAEIFEVSTDFLLKDE 65 Query: 78 PTVCSDISS 86 V + S Sbjct: 66 TEVSETLES 74 >gi|118477277|ref|YP_894428.1| hypothetical protein BALH_1588 [Bacillus thuringiensis str. Al Hakam] gi|196045052|ref|ZP_03112285.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228933140|ref|ZP_04095997.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229184045|ref|ZP_04311258.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|118416502|gb|ABK84921.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|196024054|gb|EDX62728.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228599428|gb|EEK57035.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|228826497|gb|EEM72273.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 10/118 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD-------GLQLNRYFIQIDDVKVRQKIIELV 123 + + I E + DF + GL + F ID +++ ++ + Sbjct: 61 LIKGNQNIKEKIHINEED-EDFEKENEFGFYIGFGLLIMSAF--IDYEGIQKMLLGIA 115 >gi|91794616|ref|YP_564267.1| transciptional regulator [Shewanella denitrificans OS217] gi|91716618|gb|ABE56544.1| transciptional regulator [Shewanella denitrificans OS217] Length = 229 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ RR LG++Q + + +G+T + +E G L +++ L F Sbjct: 4 ERIKQRRKELGLTQPSIAKTIGLTKATISLWESGSTSPKGENLHALAKALRCAPEFLLFG 63 Query: 77 SPTVCSDISSE 87 + ++ + ++E Sbjct: 64 NDSIKPEPNAE 74 >gi|329577403|gb|EGG58858.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 180 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF P +EE + + + G +L Sbjct: 61 FFSQQPLEQKIAYNEEESTL-YYDEEHGYEL 90 >gi|328475511|gb|EGF46270.1| transcription regulator [Listeria monocytogenes 220] Length = 180 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPT 79 FFD Sbjct: 61 FFDEEEH 67 >gi|295097139|emb|CBK86229.1| Predicted transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 230 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G++Q+ LG+ +G++ +QK E G ++L I+ L + Sbjct: 8 RLKEARAARGLTQKALGDLVGVSQAAIQKIETGKAS-QTTKLVEIANALGVMPDWLSSGE 66 Query: 78 PTVCSD 83 + +D Sbjct: 67 GAMLND 72 >gi|291547752|emb|CBL20860.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 160 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I++ R +SQE+L + ++ Q + +E + + L +SE+ + + Sbjct: 1 MELGKQIKMHRQEAHLSQEELANRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDN 60 Query: 73 FFDVSPTVCSDISSEEN 89 V D+ +E Sbjct: 61 LIKGDIEVMKDVIQKEE 77 >gi|237746118|ref|ZP_04576598.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229377469|gb|EEO27560.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 130 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 37/84 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRI R L +SQ +L +G+T Q VQK+EK + L+ +++ L ++ Sbjct: 4 IAKRIEDCRHGLNISQSELARKIGVTPQAVQKWEKAKTVPRGATLRKLADALGVSPAYIQ 63 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D + E ++I Sbjct: 64 FGISDPVPDYPAVEQEKAEYIVNK 87 >gi|54027227|ref|YP_121469.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018735|dbj|BAD60105.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 468 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 15/124 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 YVGARLRQLRTERGLSQVALAQQLEISASYLNQIEHDVRPLTVPVLLKISEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 T E + + T + ++ L R++V+ Sbjct: 65 SSQDDTRLIAELQEVVMDQELGIEADTQEIAEMVSAHPS------------LARAMVAMH 112 Query: 131 KKYR 134 +YR Sbjct: 113 NRYR 116 >gi|150390375|ref|YP_001320424.1| helix-turn-helix domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950237|gb|ABR48765.1| helix-turn-helix domain protein [Alkaliphilus metalliredigens QYMF] Length = 120 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 30/67 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R LGM+QE+LG + T V KYE G L +S++ + I + S Sbjct: 2 RIRELRQELGMTQEELGRKINQTKSNVSKYETGTLEPNIQTLNLLSDIFDVSIDYLVGKS 61 Query: 78 PTVCSDI 84 D Sbjct: 62 NIKKQDA 68 >gi|268589793|ref|ZP_06124014.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gi|291314781|gb|EFE55234.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 107 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V G+ ++ +R+++G+S E L + + ++ QQ+ +YE+G+ + + L VL Sbjct: 13 NWVSTVTGQFLKEQRLMMGLSGEALAKKMQLSQQQISRYERGMTHINLTTLLRYFSVLNM 72 Query: 69 P---ISFFFDV 76 I +FF++ Sbjct: 73 DVREIQYFFEL 83 >gi|218902221|ref|YP_002450055.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] gi|218539083|gb|ACK91481.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|15643421|ref|NP_228465.1| hypothetical protein TM0656 [Thermotoga maritima MSB8] gi|4981179|gb|AAD35740.1|AE001739_3 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 176 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ G++QE+L E ++ + + E L+ I E L + + Sbjct: 1 MRIGEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF EE + Sbjct: 61 FFSDVEEERIVFKKEERVPV 80 >gi|320321358|gb|EFW77485.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 130 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 11/111 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++QE L E + + +YE+G ++ +++VL + Sbjct: 28 IGTRIKALRKHRSLTQEALAEAMACETATIGRYERGEFSPSVEQIAKMADVLGVSPA--- 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ P+ E ++ + + T + L ID+ + + I++L S Sbjct: 85 EIIPSSYEISRQELVDLREKLFT---VAL-----CIDNPEKLRVILDLAES 127 >gi|146299044|ref|YP_001193635.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146153462|gb|ABQ04316.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 127 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 34/142 (23%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + M QE L + LG++ Q V E + +L+ +++VL + Sbjct: 9 HIGRKISRIRELKDMKQEALAQALGMSQQSVSTMENSET-IDEEKLKEVAKVLGMTV--- 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-----------RQKIIEL 122 + S E + YF I D V K+IEL Sbjct: 65 -----EAIKNFSEEA--------------VINYFNNIYDQGVFNTGNYCNFNPLDKVIEL 105 Query: 123 VRSIVSSEKKYRTIEEECMVEQ 144 +V +EK+ E+ + E+ Sbjct: 106 YERLVQAEKEKNEYLEKLLKEK 127 >gi|228932646|ref|ZP_04095521.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827018|gb|EEM72777.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 156 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 53/112 (47%), Gaps = 9/112 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R+ G +Q+ L E LG++ Q + +E+ L +++V I + + Sbjct: 7 NKIKELRIAKGWTQKSLAEKLGVSSQVISNWERAYTSPNQEDLIKLAKVFNVTIDYI--L 64 Query: 77 SPTVCSDISSEENNVMDFIST-------PDGLQLNRYFIQIDDVKVRQKIIE 121 S +++ + + +++S+ + ++ + + +D+ + ++I++ Sbjct: 65 SSDKIINLNYDIEKITEYVSSSMLKQDEKELIEKVKKHTKTNDITLFEQILD 116 >gi|217975318|ref|YP_002360069.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217500453|gb|ACK48646.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 104 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQK----YEKGVNRVGASRLQHISEVLESPI 70 V KR++ R G++Q LG +GI YE G + + LQ I++ L P+ Sbjct: 7 VPKRLKEARTKAGITQADLGAKIGIHQNSASSRMNHYELGRHTPDINTLQRIADELGVPL 66 Query: 71 SFFF 74 ++FF Sbjct: 67 NYFF 70 >gi|25011198|ref|NP_735593.1| hypothetical protein gbs1147 [Streptococcus agalactiae NEM316] gi|23095622|emb|CAD46806.1| unknown [Streptococcus agalactiae NEM316] Length = 65 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R G+SQ+ L + +G+ + + +E G +R+ + +S+ + I + Sbjct: 7 NRVKELRKQAGLSQQALADQIGVMRKTISHWELGNHRISTDNAKKLSQFFQVSIDDLLE 65 >gi|331091456|ref|ZP_08340294.1| hypothetical protein HMPREF9477_00937 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404012|gb|EGG83562.1| hypothetical protein HMPREF9477_00937 [Lachnospiraceae bacterium 2_1_46FAA] Length = 117 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD- 75 R++ RR L MS + L + +GI+ +Q+YE G + + +L+ I++ L+ ++ Sbjct: 16 RMKNRREELDMSYQTLSDKVGISKSTLQRYETGYIKNMPVDKLEDIADALQVSPAYLMGW 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + ++ ++ + T + L + F Sbjct: 76 ETNSTTNEPTTIAAHFDGTEYTEEQLDRIKAFAA 109 >gi|228904657|ref|ZP_04068720.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] gi|228854977|gb|EEM99572.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] Length = 105 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R L M Q +L + +G+ + + YE +++I+ V + Sbjct: 2 GSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIMG 61 Query: 76 VSPTVCSDISSEENNVMD 93 +S D + + + D Sbjct: 62 LSKHKTFDKETSKKIIDD 79 >gi|323341429|ref|ZP_08081671.1| XRE family transcriptional regulator [Lactobacillus ruminis ATCC 25644] gi|323091136|gb|EFZ33766.1| XRE family transcriptional regulator [Lactobacillus ruminis ATCC 25644] Length = 113 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPI 70 +I++G +IR R + GM+QE+L E ++ + K E+ V +L I L+ + Sbjct: 4 NIHLGSKIRKYRHLAGMTQEELAEYSNLSVNYISKIEREKKQNVSIEKLVDICNALDISV 63 >gi|196249528|ref|ZP_03148225.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196210822|gb|EDY05584.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 71 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R G+ Q+ + + GI+ QQ+ YE G + I+ VL+ + + Sbjct: 6 RIREIRENKGLKQKFVAQKTGISQQQLSDYETGKAYPRIDKAYKIAAVLDCKVDDLYIKK 65 Query: 78 PTVCSD 83 T ++ Sbjct: 66 ETTPNE 71 >gi|183597719|ref|ZP_02959212.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC 25827] gi|188022996|gb|EDU61036.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC 25827] Length = 93 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL---ESPI 70 N+G+ ++ R G++ +L + + ++ QQ+ +YE G+N + +L + L + + Sbjct: 12 NIGRMLKSYRRRTGLTGSELAKKINVSQQQISRYENGINNITFDKLIILFNALEMDGADV 71 Query: 71 SFFFD 75 FF+ Sbjct: 72 EMFFE 76 >gi|167758401|ref|ZP_02430528.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] gi|167664298|gb|EDS08428.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] Length = 179 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R+ ++QE+L + ++ + + E+ + + L I + L + I+ Sbjct: 1 MEIGPKLRELRIAKNLTQEELADRAELSKGFISQLERDLTSPSIATLVDILQCLGTTINE 60 Query: 73 FFDVSPTV 80 FF P Sbjct: 61 FFSEDPEE 68 >gi|118588013|ref|ZP_01545423.1| transcriptional regulator, XRE family with cupin sensor domain [Stappia aggregata IAM 12614] gi|118439635|gb|EAV46266.1| transcriptional regulator, XRE family with cupin sensor domain [Stappia aggregata IAM 12614] Length = 224 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + VD VG IR RR LG++ ++LG+ ++ + + E+ L I+ Sbjct: 7 RAASDVDTKVGALIRARRRQLGLTLQQLGDASNLSVGYLSQVERDHATPTLGSLAGIARA 66 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDF 94 L + +F V+ D + +F Sbjct: 67 LGVGLDYF--VAQPRAQDALTRAATRPNF 93 >gi|268593582|ref|ZP_06127803.1| transcriptional activator, Rgg/GadR/MutR family [Providencia rettgeri DSM 1131] gi|291310812|gb|EFE51265.1| transcriptional activator, Rgg/GadR/MutR family [Providencia rettgeri DSM 1131] Length = 123 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R M+ +L + L ++ QQ+ +YE+GV + L I + L ++ FF Sbjct: 17 IGLEIYRLRKECAMTGVQLAKILQVSQQQISRYERGVCHITVDALVLILDALHISMAEFF 76 >gi|261253382|ref|ZP_05945955.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] gi|260936773|gb|EEX92762.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] Length = 180 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 12/108 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGK+++ R + G+SQ +L + G+T + + E+ + L+ I + + + Sbjct: 1 MDVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF----------ISTPDGLQLN--RYFI 108 FF + DI + + D + +G QL R F Sbjct: 61 FFTLEVEAKDDIFFTVDQMADLGDGKIKMLLVGAKREGRQLAILREFY 108 >gi|229165969|ref|ZP_04293734.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] gi|228617522|gb|EEK74582.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|227545281|ref|ZP_03975330.1| possible transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908647|ref|ZP_07126110.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227184750|gb|EEI64821.1| possible transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894054|gb|EFK87412.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 161 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K+++ R G+SQE + + + +T Q V ++E G + ++ + + + Sbjct: 21 KQLKKLRTDKGLSQEDIAQKIHVTRQAVSRWEAGSSVPDLETAVQLAAFFDVSLDWL 77 >gi|197284378|ref|YP_002150250.1| phage reprossor [Proteus mirabilis HI4320] gi|194681865|emb|CAR41178.1| phage reprossor [Proteus mirabilis HI4320] Length = 233 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI+ R+ M+Q +L E +G++ Q VQ++E +R+ I+E+LE ++ Sbjct: 6 ERIKQARLAKNMTQAELAELVGVSPQSVQQWETST-EPRKNRVIKIAEILEVDTNWL 61 >gi|167749015|ref|ZP_02421142.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662] gi|317472587|ref|ZP_07931905.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp. 3_2_56FAA] gi|167651637|gb|EDR95766.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662] gi|316899921|gb|EFV21917.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp. 3_2_56FAA] Length = 114 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ R M+QE L E + ++ + E +V L IS L + + Sbjct: 8 LGRKIKEVRRKQNMTQEYLAEKVDLSVSHISNIETAKTKVSLPTLVEISNALGVSVDYL 66 >gi|126699831|ref|YP_001088728.1| putative regulatory protein [Clostridium difficile 630] gi|254975814|ref|ZP_05272286.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255093200|ref|ZP_05322678.1| putative regulatory protein [Clostridium difficile CIP 107932] gi|255101354|ref|ZP_05330331.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255307230|ref|ZP_05351401.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|255314943|ref|ZP_05356526.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255517617|ref|ZP_05385293.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255650728|ref|ZP_05397630.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|255656203|ref|ZP_05401612.1| putative regulatory protein [Clostridium difficile QCD-23m63] gi|260683814|ref|YP_003215099.1| putative regulatory protein [Clostridium difficile CD196] gi|260687474|ref|YP_003218608.1| putative regulatory protein [Clostridium difficile R20291] gi|296450363|ref|ZP_06892120.1| probable regulatory protein [Clostridium difficile NAP08] gi|296878775|ref|ZP_06902776.1| probable regulatory protein [Clostridium difficile NAP07] gi|306520643|ref|ZP_07406990.1| putative regulatory protein [Clostridium difficile QCD-32g58] gi|115251268|emb|CAJ69099.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209977|emb|CBA63985.1| putative regulatory protein [Clostridium difficile CD196] gi|260213491|emb|CBE05194.1| putative regulatory protein [Clostridium difficile R20291] gi|296260773|gb|EFH07611.1| probable regulatory protein [Clostridium difficile NAP08] gi|296430203|gb|EFH16049.1| probable regulatory protein [Clostridium difficile NAP07] Length = 112 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G RI++ R LG SQE L E G+ + + E+ + + I+ L+ P+ Sbjct: 4 IGKIIGDRIKVYRTKLGYSQEFLAEKAGLHPTYIGQIERAETNTSINIIMKIATALDIPL 63 Query: 71 SFFFD---VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 F + V + + E +++ ++ + + + I Sbjct: 64 ELLFANIITTEGVDNSVPLECYEMINKLTEKEQIAMLELIKCI 106 >gi|239983013|ref|ZP_04705537.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291454845|ref|ZP_06594235.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291357794|gb|EFE84696.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] Length = 509 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|237744347|ref|ZP_04574828.1| predicted protein [Fusobacterium sp. 7_1] gi|229431576|gb|EEO41788.1| predicted protein [Fusobacterium sp. 7_1] Length = 189 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 5/82 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R ++Q+++ + LG++ +QKYE G ++ I E ++ Sbjct: 1 MKISEKIKELRKNNNLTQKEMAKKLGVSLSSLQKYEYGDFYPSIEVIRKIVEFFNITLND 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 F DV SDIS+EE V+++ Sbjct: 61 FLDV-----SDISNEEKEVINW 77 >gi|229131934|ref|ZP_04260799.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] gi|228651525|gb|EEL07495.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|198283913|ref|YP_002220234.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666348|ref|YP_002426547.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248434|gb|ACH84027.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518561|gb|ACK79147.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 181 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V K+IR R G S L I+ + + E G N + L+ I L+ PI+ Sbjct: 3 QVCKKIRQLREDRGWSVRGLAARAEISPSALSQIEAGQNSPSIATLEKICAALQIPIAAI 62 Query: 74 FDVSPTVC 81 FD T Sbjct: 63 FDDGETAG 70 >gi|200387340|ref|ZP_03213952.1| helix-turn-helix domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604438|gb|EDZ02983.1| helix-turn-helix domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 265 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I+ R L ++Q +L +G + QQ+Q+ E G S Q I L+ P++ F Sbjct: 4 NNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPLNVVFPE 63 Query: 77 SPTVCSDISSEE---NNVMDFISTPDGLQL 103 S + +D + + ++ I+T G+++ Sbjct: 64 SDRLINDFRKKRRKTDEDLEAIATS-GIEM 92 >gi|313634226|gb|EFS00863.1| DNA-binding protein [Listeria seeligeri FSL N1-067] Length = 104 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|293414681|ref|ZP_06657330.1| transcriptional repressor DicA [Escherichia coli B185] gi|291434739|gb|EFF07712.1| transcriptional repressor DicA [Escherichia coli B185] Length = 135 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ Sbjct: 7 GARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLF 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 N + T + +L + F + + + + ++ E+ Sbjct: 67 GDEDKQPGEPIPANQPTNL--TEEQKELLQLFDALPESEQKAQLSEM 111 >gi|110678190|ref|YP_681197.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] gi|109454306|gb|ABG30511.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] Length = 192 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +VG R++ R GMSQ +L E G+ Q+ E + + L+ I L +S Sbjct: 3 DFDVGARLKAIRQQNGMSQRQLAEASGVPHGQISMIETNKSSPSVASLRKILGGLSLGMS 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFIS 96 FF+ + + D S Sbjct: 63 EFFEPDVVEDDKPFYTPSELRDLTS 87 >gi|257465738|ref|ZP_05630109.1| Repressor of flagellae, putative [Actinobacillus minor 202] gi|257451398|gb|EEV25441.1| Repressor of flagellae, putative [Actinobacillus minor 202] Length = 110 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPI 70 ++G I+ R G+SQ++L + G++ Q+ + E G N + + I+ L I Sbjct: 3 HLGDNIKRIRKTAGISQQELADMSGVSKAQISRLENGEQNNPQINTIVSIASNLGVSI 60 >gi|229056760|ref|ZP_04196162.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] gi|228720554|gb|EEL72118.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|169544294|ref|YP_001693069.1| XRE family transcriptional regulator [Yersinia enterocolitica] gi|168218478|emb|CAP20221.1| transcriptional regulator, XRE family [Yersinia enterocolitica] Length = 83 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ GM+QE+LG GI +V YE G ++ + ++VL+ P +F Sbjct: 5 RLKSARLRAGMTQERLGVLAGIDESTARSRVSHYETGTHKPTYDTMCLFAKVLDVPECYF 64 Query: 74 FDVSPTVCSDI 84 + + + Sbjct: 65 YILDDGFAESV 75 >gi|46906984|ref|YP_013373.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880250|gb|AAT03550.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] Length = 169 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|75908414|ref|YP_322710.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702139|gb|ABA21815.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 83 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 30/75 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ GK IR RR L SQE+L E G+ + E G ++ +++ L I Sbjct: 8 IEYRFGKAIRRRRRELDYSQEELAEKAGLHRNYISSIETGTRNPSLKNIEKLAKALNISI 67 Query: 71 SFFFDVSPTVCSDIS 85 S F D Sbjct: 68 SDLFTNYGIEAEDTE 82 >gi|313122873|ref|YP_004033132.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279436|gb|ADQ60155.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 206 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G +I+ +R G++Q++L LG+ V +E+G++ A R+ I++ L+ +S Sbjct: 1 MKIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVS 60 >gi|307307842|ref|ZP_07587570.1| putative phage repressor [Shewanella baltica BA175] gi|306910061|gb|EFN40499.1| putative phage repressor [Shewanella baltica BA175] Length = 217 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ +R ILG+ Q+ + + + +T Q + +E+ V L ++ VL+ + Sbjct: 7 LSNRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTNPSGELLLKLANVLKVNEGWLL 66 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 T +D + + F+ Sbjct: 67 -YGDTFKNDKIKDCGEKVTFLR 87 >gi|300811613|ref|ZP_07092093.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497408|gb|EFK32450.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325685247|gb|EGD27365.1| SOS regulatory protein LexA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 206 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G +I+ +R G++Q++L LG+ V +E+G++ A R+ I++ L+ +S Sbjct: 1 MKIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVS 60 >gi|257876195|ref|ZP_05655848.1| predicted protein [Enterococcus casseliflavus EC20] gi|257810361|gb|EEV39181.1| predicted protein [Enterococcus casseliflavus EC20] Length = 284 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G++I +R ++Q L + L +++Q V +E+G + +L ++ +L+ I Sbjct: 7 RKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAILDLSID 65 >gi|257875354|ref|ZP_05655007.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257809520|gb|EEV38340.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 396 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 10/106 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+ I RR G++Q++L + ++ V K+E G + + L ++ + + Sbjct: 1 MDLPIGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQSYPDITSLPLLAAYFDCSV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST-------PDGLQLNRYFIQ 109 ++ + E + + + L L + F + Sbjct: 61 D---ELLILDSQLSAKEIQRIYQLLKDAFQTKTPSEVLALAQSFTK 103 >gi|255524989|ref|ZP_05391936.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255511361|gb|EET87654.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 228 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I R + +S L + LG++ Q + +YE G R+ R++ IS++ + P + Sbjct: 4 ISYIRELFNLSMTDLAKQLGVSKQVISQYEGGKTRISDKRVKQISDMFKIPEKY 57 >gi|223984183|ref|ZP_03634332.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM 12042] gi|223963841|gb|EEF68204.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM 12042] Length = 321 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 14/98 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++I R M+Q+ + +G+T Q + +E+ + L+ I ++ ++ Sbjct: 2 KTLGEKIAGLRQEKNMTQQAFADVMGVTRQAISNWERNKTEPDVAALKKIGQIFGVDMN- 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + +DI E + D L R F+ I Sbjct: 61 ------DLLTDIHLERQAI-------DTRPLTRLFLAI 85 >gi|210617044|ref|ZP_03291379.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787] gi|210149567|gb|EEA80576.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787] Length = 333 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E + ++ Q V K+E + S++ +S+V + Sbjct: 1 MILAEKIMELRKKNGWSQEELAEKIHVSRQSVSKWESSASIPDLSKILLLSQVFGVSTDY 60 Query: 73 FF--DVSPTVCSDISSEEN 89 D+ T ++I EE Sbjct: 61 LLRDDIEETQKAEIFVEET 79 >gi|160873045|ref|YP_001557051.1| putative phage repressor [Shewanella baltica OS195] gi|160858567|gb|ABX51791.1| putative phage repressor [Shewanella baltica OS195] Length = 214 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ +R ILG+ Q+ + + + +T Q + +E+ V L ++ VL+ + Sbjct: 4 LSNRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTNPSGELLLKLANVLKVNEGWLL 63 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 T +D + + F+ Sbjct: 64 -YGDTFKNDKIKDCGEKVTFLR 84 >gi|31791644|ref|NP_854137.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|31617230|emb|CAD93337.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] Length = 474 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI+ + + V + +S G L R + + R+ I Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKKYR 134 + ++E+++ Sbjct: 119 TAQLAAATEERFS 131 >gi|47567915|ref|ZP_00238622.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47555393|gb|EAL13737.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 262 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEKSNE 71 >gi|328949375|ref|YP_004366712.1| hypothetical protein Tresu_2553 [Treponema succinifaciens DSM 2489] gi|328449699|gb|AEB15415.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 93 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++IR R I G+SQ +L LG+T Q V +E L I+ E + + Sbjct: 4 EQIRELRNIRGISQIQLANKLGVTKQSVSNWENDNILPSIEMLVKIANFFEVSTDYLLGL 63 Query: 77 SPTVCSDIS 85 D+ Sbjct: 64 DKKRTLDVE 72 >gi|229827236|ref|ZP_04453305.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC 49176] gi|229788854|gb|EEP24968.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC 49176] Length = 371 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 9/100 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 + + I+ R + ++QE L E G+T V K+E G + +++ + Sbjct: 5 LSENIKKYRKEMNLTQEGLAEAFGVTVGAVSKWESGSTVPDIMTMMELADFFNISMDILL 64 Query: 74 -FDVSPTVCSDIS------SEENNVMDFISTPDGLQLNRY 106 +++S DIS +E + +S + L RY Sbjct: 65 GYNISSKTIEDISGRIIRLAENQKYTEAVSEAEK-ALVRY 103 >gi|229120644|ref|ZP_04249888.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|301052670|ref|YP_003790881.1| putative transcriptional regulator [Bacillus anthracis CI] gi|228662817|gb|EEL18413.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|300374839|gb|ADK03743.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|215425689|ref|ZP_03423608.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92] Length = 299 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI+ +++ V + +S G L R + + R+ I Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKKYR 134 R ++E+++ Sbjct: 119 TARLAAATEERFS 131 >gi|254428930|ref|ZP_05042637.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] gi|196195099|gb|EDX90058.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] Length = 119 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 5/108 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ LG++QE+LG+ L +T + +E G + G L + VL + Sbjct: 15 ERLKAARLALGLTQEQLGDELHVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDHLICG 74 Query: 77 SPTVCSDISSEENNVMDFISTPDG-LQLNRYFIQIDDVKVRQKIIELV 123 P + +SE N+ D D QL + + ++ VK RQ ++ ++ Sbjct: 75 DPV---EGASELNSKYDAQVRNDAEAQLLKGYRRL-SVKRRQGLLAMI 118 >gi|197286070|ref|YP_002151942.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227356586|ref|ZP_03840973.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194683557|emb|CAR44421.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227163342|gb|EEI48269.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 102 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G IR R+ ++ +LGE L ++ QQ+ +YE G+ + L I ++L++ S Sbjct: 16 KNIGNFIRESRIRKSLTGAQLGELLDVSQQQISRYENGITSINIETLDMILKLLDADWSE 75 Query: 73 FF 74 F+ Sbjct: 76 FY 77 >gi|182676986|ref|YP_001831133.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636616|gb|ACB97389.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 151 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R+ G+SQ+ L G++ Q + E G L+ IS+ LE P F+ Sbjct: 22 IGKKIKDMRVAKGLSQKALSGKSGVSHQYILLIEIGTQNATIGILKRISDALEVP---FY 78 Query: 75 DVSPTV 80 + P Sbjct: 79 SILPDE 84 >gi|90962809|ref|YP_536724.1| transcriptional regulator [Lactobacillus salivarius UCC118] gi|90822003|gb|ABE00641.1| Transcriptional regulator [Lactobacillus salivarius UCC118] gi|300215422|gb|ADJ79835.1| Transcriptional regulator [Lactobacillus salivarius CECT 5713] Length = 376 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 36/69 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ G++++ L + GI+ Q + YE G G+ L I +VL+ P ++F Sbjct: 8 EKLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFPFTYFTAE 67 Query: 77 SPTVCSDIS 85 S T + Sbjct: 68 SKTFYEGTT 76 >gi|84687910|ref|ZP_01015777.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84664104|gb|EAQ10601.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 129 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G++Q++L + LGI + + +E V+ A+RLQ +S +L + + Sbjct: 14 GDRLAGAREAAGLTQKELAKKLGIKTKTLASWENDVSEPRANRLQMVSGLLSVSLGWLLT 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +E D + L+L I D R + EK R Sbjct: 74 GEGEGVDPPGTETEMSRD--ARALLLELREVQADITDATKR---------MARLEKGLRK 122 Query: 136 IEEE 139 + E+ Sbjct: 123 LMED 126 >gi|99081351|ref|YP_613505.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037631|gb|ABF64243.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 443 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 31/71 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P D G RIR RRM+LG+ Q L GI+ + E R+G L +++VL Sbjct: 2 PGDSLTGSRIRERRMMLGLRQADLARDAGISASYLNLIEHNRRRIGGKLLVTLAQVLGVE 61 Query: 70 ISFFFDVSPTV 80 S + Sbjct: 62 PSLLTEGVEAT 72 >gi|289623964|ref|ZP_06456918.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651241|ref|ZP_06482584.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487604|ref|ZP_07005645.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157696|gb|EFH98775.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867797|gb|EGH02506.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330953968|gb|EGH54228.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] Length = 189 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 31/133 (23%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + P PV +V + +R R +SQ L E G++ + + E G V + L + Sbjct: 4 ENSQRP-PVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRV 62 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK-----VRQ 117 +E LE S D I P+ NR + +I+++ V Sbjct: 63 AEALEVAFS---------------------DLIQAPE----NRDYSRINELAWAGTIVGS 97 Query: 118 KIIELVRSIVSSE 130 K + L R++ E Sbjct: 98 KAVLLARAVARRE 110 >gi|268611718|ref|ZP_06145445.1| hypothetical protein RflaF_19698 [Ruminococcus flavefaciens FD-1] Length = 123 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RR LG++QE L + + ++ Q V K+EK L I++ L + I F Sbjct: 9 SNLAKRRKELGLTQEMLAQKINVSSQAVSKWEKSS-YPDPELLPDIAKALNTSIDSLF 65 >gi|256848082|ref|ZP_05553526.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] gi|256715142|gb|EEU30119.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] Length = 273 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK N RI R G++ +++ + + + + +YE G Sbjct: 1 MNTNKKPRN--------RIAELRKEKGLTLQQVADAVSVGNNTISRYETGKREPKLETWM 52 Query: 61 HISEVLESPISFFFDVS 77 ++ V + P+S+ Sbjct: 53 KLANVFDVPVSYIMGTD 69 Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R++ S L E GI+ ++++ E+ I+EVL P+S Sbjct: 74 IRETRILHNTSLGSLAEMTGISEKRLKSIEQFETVPTVQEWFLIAEVLCVPVS 126 >gi|229042877|ref|ZP_04190612.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] gi|228726479|gb|EEL77701.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + I + + Sbjct: 65 DEELTQKIIEDSKRLA 80 >gi|290894443|ref|ZP_06557403.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|290556004|gb|EFD89558.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] Length = 169 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|226223363|ref|YP_002757470.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823987|ref|ZP_05228988.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|225875825|emb|CAS04528.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593215|gb|EFG00976.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] Length = 169 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|225420264|ref|ZP_03762567.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] gi|225041081|gb|EEG51327.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] Length = 177 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 35/68 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MQIGAKLKELRILKGLTQEELADRTELSKGFISQLERDLTSPSIATLMDILQCLGTSIGE 60 Query: 73 FFDVSPTV 80 FF+ + Sbjct: 61 FFNETQEE 68 >gi|239814040|ref|YP_002942950.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239800617|gb|ACS17684.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P ++ + +R+R R G+S E L G++ + E+G + A L+ ++ L Sbjct: 5 PPSLNDRIAQRVRDLRADRGLSLEALAAHCGVSRSMISLIERGESSPTAVLLEKLATGLG 64 Query: 68 SPISFFFDVSPTVCSDIS 85 P++ F+ +S Sbjct: 65 VPLASLFEAPVPASGPVS 82 >gi|212709591|ref|ZP_03317719.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] gi|212687767|gb|EEB47295.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+R++ R G+SQ +L + G + ++ YE G ++ A ISE L Sbjct: 4 INEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVS 63 Query: 70 IS 71 + Sbjct: 64 PA 65 >gi|212711743|ref|ZP_03319871.1| hypothetical protein PROVALCAL_02818 [Providencia alcalifaciens DSM 30120] gi|212685845|gb|EEB45373.1| hypothetical protein PROVALCAL_02818 [Providencia alcalifaciens DSM 30120] Length = 106 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + VG +R R M+ ++L + +GI+ QQ+ +YE G+ + +L H VL Sbjct: 2 KSNIISGQVGAFLRKSRKEKNMTGKQLAKLIGISQQQISRYEMGITSITLEQLDHFLIVL 61 Query: 67 E 67 + Sbjct: 62 D 62 >gi|332157761|ref|YP_004423040.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] gi|331033224|gb|AEC51036.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] Length = 66 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R + G++QE+L + LG+T Q + EKG I++ I F Sbjct: 3 NRLRELREMYGLTQEELAKKLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFGVKIEDIF 60 >gi|262164056|ref|ZP_06031795.1| protein of unknown function DUF955 [Vibrio mimicus VM223] gi|262027584|gb|EEY46250.1| protein of unknown function DUF955 [Vibrio mimicus VM223] Length = 375 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFF 73 G+R+RL R++ G + ++LG+ + +T Q + +YE + RV A ++ ++E L+ SFF Sbjct: 7 GERLRLARLLKGYTLQELGDAVSVTRQSIHQYESDI-RVPADDIKNALAESLQVETSFF 64 >gi|121636380|ref|YP_976603.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988852|ref|YP_002643539.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121492027|emb|CAL70490.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771965|dbj|BAH24771.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 474 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI+ + + V + +S G L R + + R+ I Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKKYR 134 + ++E+++ Sbjct: 119 TAQLAAATEERFS 131 >gi|62389267|ref|YP_224669.1| MerR family transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21323134|dbj|BAB97762.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41324601|emb|CAF19083.1| transcriptional regulator, MerR family [Corynebacterium glutamicum ATCC 13032] Length = 474 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 24/134 (17%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-RQKIIE-------LVRS 125 D S V D + + I+ V Q++ E L R+ Sbjct: 65 ------SRDDDSRLLAEVQDVMLDRE----------INPANVELQELSEMVYNHPQLARA 108 Query: 126 IVSSEKKYRTIEEE 139 +V ++YR + ++ Sbjct: 109 MVEMHQRYRNVRDK 122 >gi|146276465|ref|YP_001166624.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554706|gb|ABP69319.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17025] Length = 132 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 13/125 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G++QE++ LG+ + +Q +E + A+RLQ ++ +L + + Sbjct: 17 GDRLAGAREAAGLTQEEMARRLGVRLKTLQSWEDDLAEPRANRLQMMAGMLNVSLRWLLT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + V+ + L +L R +R + + L + + EK+ R Sbjct: 77 GE---GDGVEGPSEPVVLPAEGREALAELAR---------MRTQTLALAQEMGQLEKRMR 124 Query: 135 TIEEE 139 + + Sbjct: 125 ALLRK 129 >gi|327191555|gb|EGE58568.1| putative transcriptional regulator protein, LacI family [Rhizobium etli CNPAF512] Length = 189 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ G++ + L G++ + + E+ AS L I L +S FF Sbjct: 9 IGIRIRKLRLEKGLTLDDLSTASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 S ++ ++ P+ L R Sbjct: 69 AEERQQASPLARRQD--QQVWRDPETGYLRRS 98 >gi|324992649|gb|EGC24570.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995822|gb|EGC27733.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK678] gi|327460052|gb|EGF06391.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1] gi|327488642|gb|EGF20442.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 167 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + + Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLLLEE 65 Query: 76 VSPTVCSDISSEEN 89 + SE+ Sbjct: 66 GDKPEIKPVLSEDE 79 >gi|302872413|ref|YP_003841049.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575272|gb|ADL43063.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 285 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +S+ L E LG++ Q + YE G L I++ + + Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFNVTVDYL 62 >gi|294678407|ref|YP_003579022.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477227|gb|ADE86615.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 184 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG IR R G++ ++L +G + + + E+G L ++E L +SFF Sbjct: 4 HVGDDIRALRKTRGLTLKRLAADVGRSLGWLSQIERGQTTPSVRDLGLLAERLGVTLSFF 63 Query: 74 FDVSPTVCSD 83 F S + Sbjct: 64 FRSSGRAPQE 73 >gi|255018407|ref|ZP_05290533.1| hypothetical protein LmonF_13171 [Listeria monocytogenes FSL F2-515] Length = 163 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|226325593|ref|ZP_03801111.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758] gi|225205717|gb|EEG88071.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758] Length = 336 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 30/90 (33%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L LG++ Q V K+E R+ +SE+ + Sbjct: 6 KITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFCVSTDYLLKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + E ++ F Sbjct: 66 MKAENITYQESTERYAEPLKKVTMENANEF 95 >gi|196037631|ref|ZP_03104942.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228913713|ref|ZP_04077339.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228944755|ref|ZP_04107119.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090075|ref|ZP_04221326.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|196031873|gb|EDX70469.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228693305|gb|EEL47015.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|228814927|gb|EEM61184.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228845905|gb|EEM90930.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 149 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|56421725|ref|YP_149043.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56381567|dbj|BAD77475.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 135 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 56/134 (41%), Gaps = 8/134 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ ++ R +QE+L E L ++ Q+ K+E G L+ + ++ + F Sbjct: 3 NLGETLKQLRKQRRWTQEELAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFDVSADFL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T ++ E ++ + + L + + ++ + + L + + ++K+ Sbjct: 63 L-GGETRQRELLREVTDIYGTADVHETV-LAALDYLLHNQEMSEAVYALAK-LPDKKRKH 119 Query: 134 R-----TIEEECMV 142 TI +EC Sbjct: 120 VETMIMTIVKECSE 133 >gi|225571231|ref|ZP_03780229.1| hypothetical protein CLOHYLEM_07320 [Clostridium hylemonae DSM 15053] gi|225160062|gb|EEG72681.1| hypothetical protein CLOHYLEM_07320 [Clostridium hylemonae DSM 15053] Length = 233 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 37/70 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D NVGK I+ R+ ++ E+L + + + + KYEKG+ + + L+ I++V + Sbjct: 3 IDENVGKNIKKYRLAYKLTLEELAKKIHKSKSTMSKYEKGLISLDVATLEEIADVFQISP 62 Query: 71 SFFFDVSPTV 80 ++ V Sbjct: 63 AYLLAVQDEE 72 >gi|310658782|ref|YP_003936503.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825560|emb|CBH21598.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 179 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R++ ++QE+L +T + K E+ + + L I E L + + Sbjct: 1 MVIGEKIKRLRILNNLTQEELALRCDLTKGFISKLERDLTSPSIATLVDILEALGTDLKD 60 Query: 73 FFDVSPTVCSDISSEE 88 FF+ S E+ Sbjct: 61 FFNESSNNKIVFGKED 76 >gi|302866468|ref|YP_003835105.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315502877|ref|YP_004081764.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5] gi|302569327|gb|ADL45529.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca ATCC 27029] gi|315409496|gb|ADU07613.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5] Length = 214 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G++ L G++ + + E+G++ +G + L +++ L+ ++ FF Sbjct: 28 VGGRIRRYRKERGLTLRGLASRSGLSIGFLSQVERGISSIGLTALGSVAKALDRSVADFF 87 Query: 75 DVSPTVCSDISSE 87 D S Sbjct: 88 DAGTAAPDSTVSS 100 >gi|257455466|ref|ZP_05620700.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257447129|gb|EEV22138.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 87 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + GKRIR R G+SQEKL I + K E+G + +++ ISE L+ Sbjct: 13 HPQIVAFGKRIRTIRKQKGISQEKLALLAQIDRSYMGKIERGEFNLTLTKIYQISEALQV 72 Query: 69 PISFFFDVSP 78 + F Sbjct: 73 SVVTLFQEDE 82 >gi|238894195|ref|YP_002918929.1| putative repressor protein of prophage [Klebsiella pneumoniae NTUH-K2044] gi|238546511|dbj|BAH62862.1| putative repressor protein of prophage [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 241 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR RR L ++Q LG+ +G+ V +E G G S LQ +S L+ + D Sbjct: 29 RIRARRKELKLTQAVLGKLVGVNRVTVTGWESGDYAPGGSNLQALSAALKCSPKWLIDGI 88 Query: 78 PTVCSDISS 86 ++ S Sbjct: 89 GEPDNEEPS 97 >gi|260588959|ref|ZP_05854872.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|331083318|ref|ZP_08332431.1| hypothetical protein HMPREF0992_01355 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540738|gb|EEX21307.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|330404399|gb|EGG83944.1| hypothetical protein HMPREF0992_01355 [Lachnospiraceae bacterium 6_1_63FAA] Length = 77 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE--KGVNRVGASRLQHISEVLESPI 70 +G I R + G++Q +L E +G++ + E + + L I+E LE P+ Sbjct: 10 RELGLTISYYRKLKGLTQTQLAESVGLSRTHISNIEAPRVKTSISLDSLFDIAEALEVPV 69 Query: 71 SFFFD 75 FD Sbjct: 70 RDLFD 74 >gi|170023456|ref|YP_001719961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169749990|gb|ACA67508.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] Length = 209 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R L +SQ +L + G ++ ++ YE +V +++ L Sbjct: 4 IGQRIKRFREELSISQAELAQRCGWLSQSRIGNYETDSRKVSVEDAVVLAKALNVNPGEL 63 Query: 74 FDVSPTVCSDISSEENNV 91 +P S S+ E + Sbjct: 64 ILGTPDNASFTSAGERYL 81 >gi|163741328|ref|ZP_02148720.1| transcriptional regulator, putative [Phaeobacter gallaeciensis 2.10] gi|161385681|gb|EDQ10058.1| transcriptional regulator, putative [Phaeobacter gallaeciensis 2.10] Length = 445 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++LG+ Q L + I+ + E R+G L ++ VL S Sbjct: 12 DTLTGSRIRERRLMLGLRQADLARQVKISASYLNLIEHNRRRIGGKLLVDLARVLAVEPS 71 Query: 72 FFFDVSPTVCSDISSEEN 89 + + E Sbjct: 72 MLTEGAEVALLSTLREAA 89 >gi|163814918|ref|ZP_02206306.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC 27759] gi|158449857|gb|EDP26852.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC 27759] Length = 159 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R+ R +SQE+L E L ++ Q + K+E +RL +S+ + + + Sbjct: 14 MTFGERLYELRNKNNLSQEELAEVLDVSRQSISKWENDKAYPEMTRLLFMSDYFDVSLDY 73 Query: 73 FFDVSPTVCSD 83 ++ Sbjct: 74 LMRGIKKENNE 84 >gi|291536345|emb|CBL09457.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis M50/1] Length = 179 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPIS 71 +++GKR++ R+ G++Q++L + +T + + E+ N L I + L +P Sbjct: 1 MDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPAE 60 Query: 72 FFFDVSPTV 80 FF D P Sbjct: 61 FFTDEEPEQ 69 >gi|258510225|ref|YP_003183659.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476951|gb|ACV57270.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 106 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+R R + M+Q L LG++ + E+G + A + I+ L + Sbjct: 5 GRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDV 59 >gi|229177518|ref|ZP_04304897.1| hypothetical protein bcere0005_8860 [Bacillus cereus 172560W] gi|228605965|gb|EEK63407.1| hypothetical protein bcere0005_8860 [Bacillus cereus 172560W] Length = 60 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R+ L MSQE L + +G+ + + E G I++VL+ PI F Sbjct: 1 MKEYRVKLNMSQEDLAKEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKVPIEVLF 56 >gi|225573231|ref|ZP_03781986.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] gi|225039363|gb|EEG49609.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] Length = 217 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I++ R M Q++L + +GI Q + K E+GVN L+ I VL + Sbjct: 6 LGENIQIIRKHRKMKQQELADAIGINLQSLSKIERGVNYPTFETLEKIINVLGVTPN--- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 ++ S E +M+ + + Sbjct: 63 ELLTGEWEQTSHVEQFIMEVVKREE 87 >gi|116628909|ref|YP_814081.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|311111276|ref|ZP_07712673.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] gi|116094491|gb|ABJ59643.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|311066430|gb|EFQ46770.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] Length = 334 Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 18/120 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++SE+ + Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60 Query: 73 F-------FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI--DDVKVRQKIIELV 123 F++ +D + + +S +L + ++ K+R I L+ Sbjct: 61 LLKSGEPSFELKNEDIND-----KDKLPVLSD----ELVKKYLAASQKSSKLRALAIALI 111 >gi|296110814|ref|YP_003621195.1| DNA-binding protein [Leuconostoc kimchii IMSNU 11154] gi|295832345|gb|ADG40226.1| DNA-binding protein [Leuconostoc kimchii IMSNU 11154] Length = 246 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R ++Q++ + I++Q V +E + A + I + + P+++ Sbjct: 1 MTIGDQIKQLRTAHNLTQQEFATKIYISYQSVSNWENHRSYPSAEIMLLIIDTFDLPLNY 60 Query: 73 FF--DVSPTVCSD 83 F D+ PT + Sbjct: 61 FMDKDIDPTTSQE 73 >gi|229068689|ref|ZP_04201987.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] gi|228714436|gb|EEL66313.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|258510478|ref|YP_003183912.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477204|gb|ACV57523.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 163 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R+ R G+SQ L E L +T Q+ YE+G L+ +++ + I F Sbjct: 3 MTFGERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGTREPDIETLKKLADFFDVSIDF 62 Query: 73 FFDVSPTVC--SDISSEENNVMDFIS 96 P V + +++E ++ +S Sbjct: 63 LVLGKPNVSDFNGLTNEVKRTLEALS 88 >gi|255306587|ref|ZP_05350758.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 404 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKVIQCLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSID 61 >gi|225026164|ref|ZP_03715356.1| hypothetical protein EUBHAL_00405 [Eubacterium hallii DSM 3353] gi|224956415|gb|EEG37624.1| hypothetical protein EUBHAL_00405 [Eubacterium hallii DSM 3353] Length = 375 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPI 70 +G +I+ R + G++Q++LG G + ++ +YEK L+ I E L + Sbjct: 20 IGGKIKKIRELRGLTQKQLGIMCGFSASSADVRIAQYEKNKKIPREKTLKDICEALNIDV 79 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 FD + ++ DF Sbjct: 80 YCLFDADMLPYQRMFHALFDIEDF 103 >gi|170288077|ref|YP_001738315.1| XRE family transcriptional regulator [Thermotoga sp. RQ2] gi|281411883|ref|YP_003345962.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|170175580|gb|ACB08632.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2] gi|281372986|gb|ADA66548.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 176 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ G++QE+L E ++ + + E L+ I E L + + Sbjct: 1 MRIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF EE + Sbjct: 61 FFSDVEEERVVFKKEERVPV 80 >gi|116250024|ref|YP_765862.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254672|emb|CAK05746.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 192 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+ ++ +G RIR R ++ + L G++ + + E+ AS L I Sbjct: 4 KMEPELEQAIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARICAA 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 L +S FF +E V P+ Sbjct: 64 LGLSLSAFFAEEGQASPLARRQEQQV---WRDPET 95 >gi|90414720|ref|ZP_01222690.1| putative transcriptional regulator [Photobacterium profundum 3TCK] gi|90324165|gb|EAS40743.1| putative transcriptional regulator [Photobacterium profundum 3TCK] Length = 102 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQ++LG LG+ ++ YEKG + + L+ I++ L P+S+F Sbjct: 10 RLKESRKTAGISQKELGIRLGMDPSSASGRMNHYEKGRHMPDIATLRRIADELGVPLSYF 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F SD S++ +++ +S D +L R Sbjct: 70 F-----CDSDNSAKLVRLIEKLSEEDKKELIR 96 >gi|329770320|ref|ZP_08261704.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] gi|328836744|gb|EGF86398.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] Length = 181 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ ++QE+LGE ++ + + E+ + +I +VL FF Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D + S E+ + T DG +L Sbjct: 64 DKESSSQKVYYSLEDQ-TSYEETDDGYELT 92 >gi|325289095|ref|YP_004265276.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964496|gb|ADY55275.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 272 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + I R + G +QE+L + L + Q + K+E G + S L ++ L + I+ Sbjct: 6 QNISKYRKMRGFTQEELAQKLNRSSQAISKWETGQSSPDISLLPDLAFALGTDINSLM 63 >gi|291530129|emb|CBK95714.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] gi|291556915|emb|CBL34032.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 219 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +S+ E + + Sbjct: 5 IGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKSYPDIISVIKMSDCYEVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVM 92 + + D E NV+ Sbjct: 65 KGEQKMKTYYDYLEESTNVV 84 >gi|254502669|ref|ZP_05114820.1| bacteriophage CI repressor protein, putative [Labrenzia alexandrii DFL-11] gi|222438740|gb|EEE45419.1| bacteriophage CI repressor protein, putative [Labrenzia alexandrii DFL-11] Length = 147 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+RI R I G+S +L LGI +Q +E + +++L ++ +L + Sbjct: 38 DYTLGERICKARDIAGLSTAQLARRLGIKTSTLQSWESDRSEPRSNKLILLAGILNVSPT 97 Query: 72 FFF--DVSPTVCSDISSEENNV 91 + SP V D S++ +++ Sbjct: 98 WLLVGRGSPPVAEDTSADLDSM 119 >gi|183600445|ref|ZP_02961938.1| hypothetical protein PROSTU_04021 [Providencia stuartii ATCC 25827] gi|188019929|gb|EDU57969.1| hypothetical protein PROSTU_04021 [Providencia stuartii ATCC 25827] Length = 91 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K V +G +R RM G+S +L + ++ QQ+ +YE+GVN++ +L I Sbjct: 4 KKREDVYALLGHHLRQARMKRGLSGHELANIINLSQQQISRYERGVNKLSLDKLIEIIVF 63 Query: 66 LESPI 70 L+ + Sbjct: 64 LDIDV 68 >gi|254197120|ref|ZP_04903543.1| irep [Burkholderia pseudomallei S13] gi|169653862|gb|EDS86555.1| irep [Burkholderia pseudomallei S13] Length = 106 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 25/117 (21%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQEKLG G+ ++ +YE+G + + + I++ L+ PISFF Sbjct: 7 RLKQARKAAGLSQEKLGVLAGVDEMSASARMNQYERGKHEPDFAMVNRIAQALQLPISFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + L F +++ + + ++E ++ + Sbjct: 67 YSETDAEAK--------------------LIAAFHRLEPSQ-KTMLLEQALAMAGID 102 >gi|164687559|ref|ZP_02211587.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] gi|164603333|gb|EDQ96798.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] Length = 139 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + ++ R G+SQE+L L + Q + K+EKG++ A L I+++ E +S Sbjct: 4 ENLKQLRKSKGLSQEELAIRLNVVRQTISKWEKGLSVPDADMLIKIADIFEVSVS 58 >gi|125623537|ref|YP_001032020.1| hypothetical protein llmg_0681 [Lactococcus lactis subsp. cremoris MG1363] gi|124492345|emb|CAL97283.1| putative membrane protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070296|gb|ADJ59696.1| hypothetical protein LLNZ_03535 [Lactococcus lactis subsp. cremoris NZ9000] Length = 161 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G +QE L E IT + +Q+ E G + V L IS L P+S F+ Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENGTD-VSLDTLASISNALLVPVSELFESI 63 Query: 78 PTVCSDIS 85 ++ Sbjct: 64 EEEAKEVE 71 >gi|152996492|ref|YP_001341327.1| putative prophage repressor [Marinomonas sp. MWYL1] gi|150837416|gb|ABR71392.1| putative prophage repressor [Marinomonas sp. MWYL1] Length = 216 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ +R L ++Q +L + +GI+ Q +QK E G + +L ++++ L+ + Sbjct: 1 MTIAERVKQKRTDLRLTQAELAKRVGISQQSLQKIEDGRTQ-NPRKLLNLAKALDCDAEW 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 + + +S N ++ + Sbjct: 60 LLLGTACEVRESASSYTNNNSASTSLET 87 >gi|223932874|ref|ZP_03624870.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223898455|gb|EEF64820.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 168 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 31/57 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ++L + LGI + + ++E G + + + + Q +++ E + + Sbjct: 2 NRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIKSDKAQALADYFEVEVGYL 58 >gi|332365448|gb|EGJ43209.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 168 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEEN 89 I SE+ Sbjct: 66 GDKPEIKSILSEDE 79 >gi|325262256|ref|ZP_08128994.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033710|gb|EGB94987.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 197 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 33/56 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VGK I R GM+Q+ L + + I+ + + K+E+GV S L+ +S++LE + Sbjct: 6 VGKLILTLRQEKGMTQKALADAMNISDRTISKWERGVGCPDVSLLRGLSDILEVDV 61 >gi|228906769|ref|ZP_04070639.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL 200] gi|228852885|gb|EEM97669.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL 200] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ + I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKKLA 80 >gi|229010434|ref|ZP_04167638.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] gi|228750854|gb|EEM00676.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|160935696|ref|ZP_02083071.1| hypothetical protein CLOBOL_00586 [Clostridium bolteae ATCC BAA-613] gi|158441440|gb|EDP19150.1| hypothetical protein CLOBOL_00586 [Clostridium bolteae ATCC BAA-613] Length = 112 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 35/62 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ +G +Q+++ + LG+T YE G + ++L+ ++ +L + SF + Sbjct: 5 EQLKKARVSMGYTQQQVADALGLTASTYCGYETGKRQPDVAKLKQLARILNTTGSFLLET 64 Query: 77 SP 78 P Sbjct: 65 EP 66 >gi|163938942|ref|YP_001643826.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861139|gb|ABY42198.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|313901693|ref|ZP_07835124.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313468044|gb|EFR63527.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 216 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VGKRIR R G+S L G++ + + E + + I+ LE ++ Sbjct: 1 MEVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVVLRIAAALEVDLA 60 Query: 72 FFFDVSPTVCSDISSEE 88 V P D + E+ Sbjct: 61 EL--VGPATVGDGAGEQ 75 >gi|295090228|emb|CBK76335.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10] Length = 136 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPIS 71 + G++++ R LG++Q++L E +G+T + + YE +R G R + ++E L ++ Sbjct: 1 MTFGEKVKAERTKLGLNQDELAEKIGVTRRVICSYENDKSRPRGTERYKKLAEALNVNVN 60 Query: 72 FFFDVSPTVCSDISSE 87 + +D+ + Sbjct: 61 YLLSEDDAFIADVEDK 76 >gi|226324586|ref|ZP_03800104.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] gi|225207034|gb|EEG89388.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] Length = 179 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 36/76 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+++R R+ ++QE+L + ++ + + E+ + + L I + L + ++ Sbjct: 1 MNIGQKVRELRIAKNLTQEELADRSELSKGFISQLERDLTSPSIATLVDILQCLGTNLNE 60 Query: 73 FFDVSPTVCSDISSEE 88 FF E+ Sbjct: 61 FFSDDEEEQVVFGDED 76 >gi|217965166|ref|YP_002350844.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|217334436|gb|ACK40230.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|307570274|emb|CAR83453.1| DNA-binding protein [Listeria monocytogenes L99] Length = 169 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|206968183|ref|ZP_03229139.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|229177566|ref|ZP_04304944.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] gi|206737103|gb|EDZ54250.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|228605928|gb|EEK63371.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|38232985|ref|NP_938752.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38199243|emb|CAE48874.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 474 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R ++Q L E LGI+ + + E V + L+ I+ +FF Sbjct: 5 YVGSRLRQLRKERDLTQAALAELLGISASYINQIEHDVRPLTPQVLRKITASFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S + D + + Sbjct: 65 ------SRDDSSRLIAELHDVMFDKE 84 >gi|16802775|ref|NP_464260.1| hypothetical protein lmo0733 [Listeria monocytogenes EGD-e] gi|47095298|ref|ZP_00232909.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499603|ref|ZP_03667952.1| hypothetical protein LmonF1_07864 [Listeria monocytogenes Finland 1988] gi|224501962|ref|ZP_03670269.1| hypothetical protein LmonFR_05517 [Listeria monocytogenes FSL R2-561] gi|254828817|ref|ZP_05233504.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|254830277|ref|ZP_05234932.1| hypothetical protein Lmon1_02912 [Listeria monocytogenes 10403S] gi|254900031|ref|ZP_05259955.1| hypothetical protein LmonJ_09460 [Listeria monocytogenes J0161] gi|254911416|ref|ZP_05261428.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935743|ref|ZP_05267440.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255028966|ref|ZP_05300917.1| hypothetical protein LmonL_06926 [Listeria monocytogenes LO28] gi|284801064|ref|YP_003412929.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284994206|ref|YP_003415974.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|16410122|emb|CAC98811.1| lmo0733 [Listeria monocytogenes EGD-e] gi|47016369|gb|EAL07291.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|258601229|gb|EEW14554.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258608327|gb|EEW20935.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056626|gb|ADB67567.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284059673|gb|ADB70612.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|293589357|gb|EFF97691.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 169 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|301299974|ref|ZP_07206200.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852429|gb|EFK80087.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 119 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 36/69 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ G++++ L + GI+ Q + YE G G+ L I +VL+ P ++F Sbjct: 8 EKLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFPFTYFTAE 67 Query: 77 SPTVCSDIS 85 S T + Sbjct: 68 SKTFYEGTT 76 >gi|254993818|ref|ZP_05276008.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] Length = 169 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|206562126|ref|YP_002232889.1| putative repressor protein [Burkholderia cenocepacia J2315] gi|198038166|emb|CAR54117.1| putative repressor protein [Burkholderia cenocepacia J2315] Length = 111 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R R+ G+SQE+LG GI +V +YE G + ++ VL P SF Sbjct: 13 KRLREARLRSGLSQEQLGIEAGIDEFSASARVNQYETGKHAPKLQTAHRLARVLHVPTSF 72 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 ++ + + + + D + Sbjct: 73 LYEGNDLLARLLVAAAPLPQDSL 95 >gi|146299913|ref|YP_001194504.1| XRE family plasmid maintenance system antidote protein [Flavobacterium johnsoniae UW101] gi|146154331|gb|ABQ05185.1| plasmid maintenance system antidote protein, XRE family [Flavobacterium johnsoniae UW101] Length = 136 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++G+ I R + GM QE L +G+T Q V E G + +L I+EVL Sbjct: 8 KHIGRNISRIRELRGMKQEALAFAIGVTQQTVSNIE-GSETIEDDKLDAIAEVLGVS 63 >gi|47091696|ref|ZP_00229492.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|254853835|ref|ZP_05243183.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|254933600|ref|ZP_05266959.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|255521409|ref|ZP_05388646.1| hypothetical protein LmonocFSL_09325 [Listeria monocytogenes FSL J1-175] gi|300765051|ref|ZP_07075038.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|47020015|gb|EAL10752.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258607218|gb|EEW19826.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|293585163|gb|EFF97195.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300514176|gb|EFK41236.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|328467297|gb|EGF38377.1| hypothetical protein LM1816_00625 [Listeria monocytogenes 1816] gi|328475606|gb|EGF46359.1| hypothetical protein LM220_07617 [Listeria monocytogenes 220] gi|332311156|gb|EGJ24251.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 169 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVS 58 >gi|327473016|gb|EGF18443.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 158 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G++Q+++ E GI Q++E G + G L+ ++ I + Sbjct: 42 ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDYLLGK 101 Query: 77 SPTVCSD 83 + SD Sbjct: 102 TDNKKSD 108 >gi|255527936|ref|ZP_05394778.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255508363|gb|EET84761.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 183 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+ + + ++ R+ +S +L E G++ + + EKG + + + I++ L Sbjct: 4 NPI---IAENLKRLRLERNLSLGQLAELSGVSKVMLSQIEKGDSNPTINTVWKIAKGLNV 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 P + D S + E + Sbjct: 61 PYTVLIDKHEDETSVVKKSEAEYQN 85 >gi|331268175|ref|YP_004385884.1| putative prophage repressor [Clostridium botulinum BKT015925] gi|329127725|gb|AEB77665.1| putative prophage repressor [Clostridium botulinum BKT015925] Length = 108 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R + G++Q + LG++ + EKGV + + I + ++ + Sbjct: 3 ERIKELRKLKGLNQSTFAKSLGLSQNHISSIEKGVRGLTTRTINDICRIYNVSPNWLING 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + D + + + + F+Q+ D + +Q II+L + Sbjct: 63 TGDIFIDTTE------QLYTNNEVKEFIEMFLQL-DKETQQLIIQLTK 103 >gi|322805848|emb|CBZ03413.1| DNA-binding protein; possible transcriptional regulator [Clostridium botulinum H04402 065] Length = 370 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R ++QE+L +G++ V K+E G + + L I+ + I Sbjct: 4 LLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIATLFNVTIDT 63 Query: 73 FFDVSPTVCSD 83 + + ++ Sbjct: 64 LLNFKIELSNE 74 >gi|239928289|ref|ZP_04685242.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291436618|ref|ZP_06576008.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291339513|gb|EFE66469.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] Length = 509 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G+ IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGRLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|229029542|ref|ZP_04185622.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271] gi|228731741|gb|EEL82643.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271] Length = 95 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ Sbjct: 19 MSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNV 74 >gi|225863714|ref|YP_002749092.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225789773|gb|ACO29990.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 77 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ Sbjct: 1 MSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNV 56 >gi|239828436|ref|YP_002951060.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239808729|gb|ACS25794.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 137 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R +QE+L + L I+ Q+ K+E G LQ +S + + + F Sbjct: 3 MNLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGDLLPDVQSLQKLSNLYKVSVDF 62 Query: 73 F 73 Sbjct: 63 L 63 >gi|238797081|ref|ZP_04640584.1| hypothetical protein ymoll0001_2450 [Yersinia mollaretii ATCC 43969] gi|238719126|gb|EEQ10939.1| hypothetical protein ymoll0001_2450 [Yersinia mollaretii ATCC 43969] Length = 109 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Query: 12 DINV-GKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +R++ R++ G+SQ+ LG G + ++ +YEKGV+ +H++E L Sbjct: 7 NRHIFSQRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANLVTAKHLAEAL 66 Query: 67 ESPISFFFDVSPTVC 81 P+++F+ + Sbjct: 67 NIPLAYFYADDDNLA 81 >gi|162449406|ref|YP_001611773.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So ce 56'] gi|161159988|emb|CAN91293.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So ce 56'] Length = 371 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 17/135 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R RR G+SQ L E +T Q V E G ++ L+ + F Sbjct: 10 NRVRERREARGLSQVALAERARLTRQSVGAIEAGRATPAVDVALRLASALDCSVEVLF-G 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR--YFIQIDDVKVR-------------QKIIE 121 P+ +D+++E + +R + ++ VR + ++E Sbjct: 69 EPSAVADLATETDAPAALGRAAVARIADRWVSYP-LEQDAVRVAADGIVTGERRGRAVVE 127 Query: 122 LVRSIVSSEKKYRTI 136 +R++ E+ + Sbjct: 128 PLRALAEVEENVVVM 142 >gi|326390754|ref|ZP_08212307.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993148|gb|EGD51587.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 130 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q L + LGI+ + YE L+ I++ I + + Sbjct: 6 RLKELRKEKNLTQGDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDYLLGRT 65 Query: 78 P-----TVCSDISSEENNVMDFIST-PDGLQLNRYFIQID--DVKVRQKIIELVRSI 126 ++ S++ + +F +T + L F Q K ++II ++++I Sbjct: 66 DIRSPVDEITEAVSDDPELFEFWNTLKEREDLKLLFKQTKKLSPKDIKQIIRIIKAI 122 >gi|294631998|ref|ZP_06710558.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] gi|292835331|gb|EFF93680.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] Length = 509 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|196041265|ref|ZP_03108560.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196027973|gb|EDX66585.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 10/118 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD-------GLQLNRYFIQIDDVKVRQKIIELV 123 + + I E + DF + GL + F ID +++ ++ + Sbjct: 61 LIKGNQNIKEKIHINEED-EDFEKENEFGFYIGFGLLIMSAF--IDYEGIQKMLLGIA 115 >gi|325567313|ref|ZP_08143980.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] gi|325158746|gb|EGC70892.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] Length = 284 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G++I +R ++Q L + L +++Q V +E+G + +L ++ +L I Sbjct: 7 RKIGQQIATKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAILGLSID 65 >gi|289705735|ref|ZP_06502119.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] gi|289557575|gb|EFD50882.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] Length = 476 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 12/130 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G++ ++L E G++ + E S +Q I+EVL P+ Sbjct: 4 VALGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQRIAEVLGVPVE- 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---QKIIELVRSIVSS 129 D+ +E ++ + + ++ + +R + E++ I Sbjct: 63 --DLLTGRAPTRRAELEIEVERFARSE------HYASLGLPPLRIGPRTPTEVLEVIAGL 114 Query: 130 EKKYRTIEEE 139 E + R EE Sbjct: 115 EAELRRRLEE 124 >gi|239916764|ref|YP_002956322.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281414779|ref|ZP_06246521.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|239837971|gb|ACS29768.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] Length = 488 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 12/130 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G++ ++L E G++ + E S +Q I+EVL P+ Sbjct: 16 VALGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQRIAEVLGVPVE- 74 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---QKIIELVRSIVSS 129 D+ +E ++ + + ++ + +R + E++ I Sbjct: 75 --DLLTGRAPTRRAELEIEVERFARSE------HYASLGLPPLRIGPRTPTEVLEVIAGL 126 Query: 130 EKKYRTIEEE 139 E + R EE Sbjct: 127 EAELRRRLEE 136 >gi|152977534|ref|YP_001377051.1| helix-turn-helix domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|114152691|gb|ABI52595.1| PlcR [Bacillus cytotoxicus] gi|119380976|gb|ABL73864.1| PlcR [Bacillus cytotoxicus] gi|152026286|gb|ABS24056.1| helix-turn-helix domain protein [Bacillus cytotoxicus NVH 391-98] Length = 288 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI+ F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPITHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|313902610|ref|ZP_07836010.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313467176|gb|EFR62690.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 456 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V R+R R LG+SQ +L G++ Q + E G + ++ L + F Sbjct: 55 VASRLREARRRLGLSQRELAVRAGVSRQAIGAIEAGRMTPSLAVAMRLARALGCRVEDLF 114 Query: 75 DVSPTVCS 82 + Sbjct: 115 RLDEPAPE 122 >gi|229171786|ref|ZP_04299358.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] gi|228611683|gb|EEK68933.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|228475837|ref|ZP_04060551.1| DNA-binding protein [Staphylococcus hominis SK119] gi|314937266|ref|ZP_07844610.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|228270113|gb|EEK11573.1| DNA-binding protein [Staphylococcus hominis SK119] gi|313654620|gb|EFS18368.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 118 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 16/109 (14%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R + SQ++L + L ++ Q V K+E G N L +S++ + Sbjct: 7 IKKYRKLNNWSQDELADILNVSRQSVSKWESGKNYPSLDILVVMSDLFGVTLDQLVKGDI 66 Query: 79 TVCSDISSEE----------NNVMDFIST------PDGLQLNRYFIQID 111 + I + + + F++ P G L F I Sbjct: 67 ELKKQILNGDYHDGAYKRRPTTMAGFLADYWWTIFPVGGFLVWAFYAIS 115 >gi|226304066|ref|YP_002764024.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226183181|dbj|BAH31285.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 214 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + K+ PV +G R++ R ++ + L E G+T + K E+ + L Sbjct: 4 VAKAKEAVEPVGPRIGARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLI 63 Query: 61 HISEVLESPISFFFDVSPTVC 81 + VLE P+ F+ + Sbjct: 64 KVCAVLEIPVGSLFENASAGE 84 >gi|92112332|ref|YP_572260.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795422|gb|ABE57561.1| transcriptional regulator, XRE family with cupin sensor protein [Chromohalobacter salexigens DSM 3043] Length = 190 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++V +R R +SQ+ L E G++ + + EKG V S L ++E L Sbjct: 16 VHVAANVRRLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLSTLDRLAEALGV---L 72 Query: 73 FFDVSPTVCSDISSEENNVM 92 F+ + S+ S+ + V Sbjct: 73 FYALVQPPGSEDSARIDEVA 92 >gi|291560620|emb|CBL39420.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 130 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 21/130 (16%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---- 73 R+ R L ++QE G+ LG+T + + EKG + + I +F Sbjct: 4 RLHHLRKTLKLNQEDFGKRLGVTGASISRLEKGERNITEQMILSICREFNVSEDWFRYEK 63 Query: 74 ---F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII----EL 122 F D + S + E N D I L + F + D K ++ I +L Sbjct: 64 GEMFLSVEDEVSEMVSHLLDESNPFYDMI-----LDIMHTFNNL-DDKGQEIICNFTADL 117 Query: 123 VRSIVSSEKK 132 + I EKK Sbjct: 118 AKRIAEKEKK 127 >gi|302554854|ref|ZP_07307196.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302472472|gb|EFL35565.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 509 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G+ IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|257785053|ref|YP_003180270.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473560|gb|ACV51679.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 364 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 6/91 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L L ++ Q V K+E + ++ +SE+ + Sbjct: 1 MLLSEKIMSLRKRNGWSQEELARQLNVSRQSVSKWESMASMPDIQKIMTMSELFGVSTDY 60 Query: 73 F----FDVSPTVCSDISSEENNVMDFISTPD 99 + P + + S E + +TP+ Sbjct: 61 LLKDEMEDLPATAASLDSAETSSES--ATPE 89 >gi|315283384|ref|ZP_07871592.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313612974|gb|EFR86908.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 118 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 18/107 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R ++Q++L +G T + KYE +R L ++E+L + F D Sbjct: 7 GEKLIHLRKKNRLTQKQLAVKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLLD 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + S F I + ++ + +EL Sbjct: 67 DVAGLREKNS------------------VNAFPLIGNPELEKWYLEL 95 >gi|153581899|emb|CAM34257.1| phage repressor protein [Streptococcus pyogenes] gi|262113712|emb|CAR95379.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 229 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ +R+ +Q ++ LGI K+E G + L ++ +L+ P+++F Sbjct: 4 GIRLKEKRIERKFNQSEIAYKLGINRASYNKWESGKSVPNQKNLTALATILDVPVTYF 61 >gi|149914665|ref|ZP_01903195.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b] gi|149811458|gb|EDM71293.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b] Length = 210 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+ +R R GM+ L E G++ + K E GV + LQ +S L P++ Sbjct: 25 IGREVREVRHARGMTVADLAEATGLSVGMLSKIENGVTSPSLTTLQALSSALSVPVT 81 >gi|332204509|gb|EGJ18574.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 290 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R++ +R L +SQ++L E GI Q Q+ + E+G G+ L +S+ L+ + Sbjct: 3 MLLATRLKNKRKELKLSQKELAE--GICEQGQISRMEQGKYSPGSELLFQLSKRLKVSMD 60 Query: 72 FFFDVSP-TVCSDISSEENNVMDFISTPD 99 +FF+ + + +I + F+ + Sbjct: 61 YFFEDTEVSSLENIDKFKELSKKFLDERE 89 >gi|327490803|gb|EGF22584.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 120 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G++Q+++ E GI Q++E G + G L+ ++ I + Sbjct: 4 ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDYLLGK 63 Query: 77 SPTVCSD 83 + SD Sbjct: 64 TDNKKSD 70 >gi|257065284|ref|YP_003144956.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792937|gb|ACV23607.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 200 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R ++QE+L E L ++ V K+E G L+ +S I Sbjct: 1 MEFGEKLQELRKARSLTQEQLAEALYVSRTAVSKWESGRGYPSIDSLKEVSRFFSVTIDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 +SP ++ E Sbjct: 61 L--ISPDEVVSVAQAER 75 >gi|228919863|ref|ZP_04083219.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839764|gb|EEM85049.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|229160788|ref|ZP_04288779.1| Transcriptional regulator, MerR [Bacillus cereus R309803] gi|228622636|gb|EEK79471.1| Transcriptional regulator, MerR [Bacillus cereus R309803] Length = 181 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 8/110 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDV 113 SF + + T + S +N + +S L + I Sbjct: 63 SFLLEETNTDDLIVRSHKRKKMIIDNLSYEMLSPDFTGNLATAIMTIPPN 112 >gi|222530394|ref|YP_002574276.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457241|gb|ACM61503.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 105 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ R G+S KL + G+ + E G + I L+ + FF Sbjct: 4 VGKRIKELREKCGLSMSKLAKIAGVGQSTLSYIENGERNPTIDVIIKICNALDITLVEFF 63 Query: 75 --DVSPTVCSDISSEENNVMDFISTPD 99 + P + S E +S + Sbjct: 64 GGEEKPHMESPKLQELLVYAKKLSEKE 90 >gi|167904497|ref|ZP_02491702.1| helix-turn-helix domain protein [Burkholderia pseudomallei NCTC 13177] Length = 111 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 51/104 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I +R+ ++QE + E LGI + V + E+GV RL ++++ E + Sbjct: 2 VGRAIAKQRIACDLTQEAVAERLGIGLEAVSRMERGVVIPTVVRLFELADIFECDAADLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + SD +S N ++ +ST D L F ++ R++ Sbjct: 62 TEASSRSSDQASHLNRLLSRLSTADRTLLLEVFERLSTRLSRRQ 105 >gi|153941295|ref|YP_001390879.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152937191|gb|ABS42689.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318944|gb|ADF99321.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] Length = 370 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 4 LLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTIDT 63 Query: 73 FFDVSPTVCSD 83 + + + Sbjct: 64 LLNFKIELSDE 74 >gi|70726855|ref|YP_253769.1| hypothetical protein SH1854 [Staphylococcus haemolyticus JCSC1435] gi|68447579|dbj|BAE05163.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MQIGNKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSPSD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + E + D Sbjct: 61 FFKEKSKEKVLYTKNERTIYD 81 >gi|75764621|ref|ZP_00744064.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899709|ref|ZP_04063958.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL 4222] gi|74487893|gb|EAO51666.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859941|gb|EEN04352.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL 4222] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ + I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKKLA 80 >gi|325697266|gb|EGD39152.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 167 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + + Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLEE 65 Query: 76 VSPTVCSDISSEEN 89 + + SE+ Sbjct: 66 SDKPEINPVLSEDE 79 >gi|238798765|ref|ZP_04642236.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] gi|238717397|gb|EEQ09242.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] Length = 279 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V I+ R+ L ++Q +L +G + QQ+Q+ E G Q I VL+ P++ Sbjct: 15 VMVQNNIKQLRIQLSITQRELAAAVGTSQQQIQRIETGKVAARLEVAQAICSVLKKPLNV 74 Query: 73 FFDVSPTVCSDISSEENNVMDFIS--TPDGLQL 103 F + +S + ++ D + +G+++ Sbjct: 75 VFPNGDHMLRRLSDKRSSCDDDLGEMAKNGIEM 107 >gi|218290643|ref|ZP_03494734.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239308|gb|EED06506.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 106 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+R R + M+Q L LG++ + E+G + A + I+ L + Sbjct: 5 GRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDV 59 >gi|90962618|ref|YP_536534.1| Cro/CI family transcriptional regulator [Lactobacillus salivarius UCC118] gi|90821812|gb|ABE00451.1| Transcriptional regulator, Cro/CI family [Lactobacillus salivarius UCC118] gi|300215223|gb|ADJ79639.1| Transcriptional regulator, Cro/CI family [Lactobacillus salivarius CECT 5713] Length = 267 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R+ +Q+++ E L IT Q + YE+G+ Q ++ P+S+ Sbjct: 2 NRIKELRVEKHKTQKEIAEFLNITEQALSYYERGLREPKLKTWQALANFFNVPVSYL 58 >gi|322375072|ref|ZP_08049586.1| putative helix-turn-helix protein [Streptococcus sp. C300] gi|321280572|gb|EFX57611.1| putative helix-turn-helix protein [Streptococcus sp. C300] Length = 165 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 5 EKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYL 61 >gi|301066025|ref|YP_003788048.1| double-stranded beta-helix-like protein [Lactobacillus casei str. Zhang] gi|300438432|gb|ADK18198.1| Double-stranded beta-helix related protein [Lactobacillus casei str. Zhang] Length = 179 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R+ ++QE+LGE +T + + E + I VL + Sbjct: 1 MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGQSPAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF P + E++ + ++ G +L Sbjct: 61 FFREEP--KDSLVYHEDDQVTYLDEEKGYRL 89 >gi|169334840|ref|ZP_02862033.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] gi|169257578|gb|EDS71544.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] Length = 132 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 35/61 (57%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G+ I R M+Q++L + L IT + V K+E+G++ S + ++++L+ Sbjct: 1 MDNEMGRLISSLRKEKNMTQQELADKLNITDKAVSKWERGLSYPDISLIPKLADILDIDP 60 Query: 71 S 71 + Sbjct: 61 N 61 >gi|167767683|ref|ZP_02439736.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1] gi|167710700|gb|EDS21279.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1] Length = 120 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NVGKR++ R G +QE++ + L +T + E ++ L + +++L I + Sbjct: 18 NVGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYL 77 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S+EN D + + L+L F Sbjct: 78 L--------RPESDENGEKDDVLNKEILRLLEKF 103 >gi|294509118|ref|YP_003566046.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] gi|294352042|gb|ADE72366.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I R + ++Q++L E L +T Q + K+E + + +L ++EVL + Sbjct: 4 GEKIAKARREMNLTQDQLAEMLEVTRQTISKWESNLAYPESVKLGKLAEVLNVTCDYLLR 63 Query: 76 VSPTVCSDISSE 87 + + S E Sbjct: 64 ENQATSTSTSIE 75 >gi|229162632|ref|ZP_04290592.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus R309803] gi|228620895|gb|EEK77761.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus R309803] Length = 117 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 2/86 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G++QE+LG L ++ Q+ YE + L IS P+ F Sbjct: 9 QNLKELRKSRGLTQEQLGSELNLSRNQINNYENKLFEPSMETLLQISSFFNVPLDTLFSG 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 + E + + T L+ Sbjct: 69 YDQTKDTVL--EQALYEVQLTYGALE 92 >gi|227514760|ref|ZP_03944809.1| bacteriophage transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086869|gb|EEI22181.1| bacteriophage transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 115 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R +SQ LG+ +G++ V +E ++ + ++E+ E + Sbjct: 12 VMIGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTEPSSTYVTKLAELFEVSTDY 71 Query: 73 FFD 75 D Sbjct: 72 LLD 74 >gi|255025462|ref|ZP_05297448.1| transcriptional repressor, putative [Listeria monocytogenes FSL J2-003] Length = 68 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K IR R M+Q+++ + L ++ +YE G AS L I++ + I + D Sbjct: 4 KNIRSIREDNDMTQQQMADLLNVSQNTYSQYETGKIEWTASTLIKIADYFDVSIDYLLDR 63 Query: 77 SPTVC 81 + T Sbjct: 64 TKTTE 68 >gi|306828752|ref|ZP_07461944.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304428930|gb|EFM32018.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 165 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 5 EKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLLLD 64 Query: 77 SPTVCSDIS 85 + S + Sbjct: 65 ENSEKSSTA 73 >gi|296127941|ref|YP_003635191.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296019756|gb|ADG72992.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 488 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 23/138 (16%) Query: 11 VDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD V G+R+R R GM+ + LG +G QV E G S L ++E L Sbjct: 14 VDTLVLGRRVRHLRTARGMTLDDLGRAIGRAPSQVSMLENGHREPKLSLLAQVAEALGVE 73 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY-----FIQIDDVKV---RQKIIE 121 + P ++L R F + +V R + Sbjct: 74 LGDLLSTEPPTRRAALE--------------VELERAQRGPLFASLGVPQVKVGRSLPSD 119 Query: 122 LVRSIVSSEKKYRTIEEE 139 + ++V+ +++ + + E Sbjct: 120 ALEALVALQEQVQRLLTE 137 >gi|218233356|ref|YP_002365796.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] gi|218161313|gb|ACK61305.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|119963185|ref|YP_949637.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119950044|gb|ABM08955.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 206 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G R+R R G + ++L E G++ + + E+G L IS+ L Sbjct: 18 IGARVRQERQNRGWTLDQLAEAAGVSRRMIINMEQGAANPSVGTLLRISDALGV 71 >gi|326795087|ref|YP_004312907.1| phage repressor like transcriptional regulator, XRE family [Marinomonas mediterranea MMB-1] gi|326545851|gb|ADZ91071.1| phage repressor like transcriptional regulator, XRE family [Marinomonas mediterranea MMB-1] Length = 216 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +R++ +R+ LG++Q +L +GI+ Q +QK E +L +++ LE + Sbjct: 1 MNIAERVKTQRIHLGLTQTELANKVGISQQSLQKIEDARTS-NPRKLLALAKALECTPEW 59 Query: 73 F-FDVSPTVCSDISS 86 F + + S Sbjct: 60 LQFGIEGVSSGEAES 74 >gi|325979177|ref|YP_004288893.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179105|emb|CBZ49149.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 69 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I + K I+ R++ MSQ L + +G++ Q + K+E G N L ++++ E + Sbjct: 6 IQLSKNIKKYRLMKKMSQSDLSKRIGVSHQAISKWETGENYPDFMSLISLAQLFEVSLD 64 >gi|251789524|ref|YP_003004245.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538145|gb|ACT06766.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI R L ++Q++L E LGI Q + YE G +V AS L ++ +L + Sbjct: 21 KELGARIAQARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQLATILNLSLD 79 >gi|227115336|ref|ZP_03828992.1| hypothetical protein PcarbP_20365 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 88 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI ++ +YE G++R + ++VL P +F Sbjct: 5 RLKTARLRANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVPECYF 64 Query: 74 FDVSPTVCS 82 + V Sbjct: 65 YTVDDDFAE 73 >gi|212710689|ref|ZP_03318817.1| hypothetical protein PROVALCAL_01756 [Providencia alcalifaciens DSM 30120] gi|212686770|gb|EEB46298.1| hypothetical protein PROVALCAL_01756 [Providencia alcalifaciens DSM 30120] Length = 84 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R G + + + +G + QQ+ +YE+G+N++ L ++L I F Sbjct: 16 IGNKIKGLRRDAGYTAVEFAQLIGCKSAQQLYRYERGINKIDIDTLVSALKILRVDIKEF 75 Query: 74 FD 75 F+ Sbjct: 76 FN 77 >gi|312136891|ref|YP_004004228.1| transcriptional regulator, xre family [Methanothermus fervidus DSM 2088] gi|311224610|gb|ADP77466.1| transcriptional regulator, XRE family [Methanothermus fervidus DSM 2088] Length = 307 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G+++R R LG+S + L + + ++ + + KYE+G+ R+ + + L I+F Sbjct: 128 GRKLRRVREKLGLSLKDLADHINVSRESIYKYERGLGRMSLDVALALEKYLGCKITF 184 >gi|227113779|ref|ZP_03827435.1| hypothetical protein PcarbP_12478 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 87 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI +V +YE G++R + ++VL P S+F Sbjct: 5 RLKSARLNAHLTQEKLGILAGIEEETARSRVSQYENGIHRPTFEMMCAFAKVLNVPESYF 64 Query: 74 FDVSPTVCS 82 + V Sbjct: 65 YTVDDKFAE 73 >gi|197284840|ref|YP_002150712.1| phage protein [Proteus mirabilis HI4320] gi|194682327|emb|CAR42123.1| phage protein [Proteus mirabilis HI4320] Length = 85 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R + ++Q +LG G+ ++ +YE G+++ + ++++L P +F Sbjct: 5 RLRYARKMAKLTQTRLGTLAGMDVASARSRISQYESGLHKPSFEVVCKLAKILNLPECYF 64 Query: 74 FDVSPTVCSDI 84 + V+ + DI Sbjct: 65 YTVNDCLAEDI 75 >gi|187777811|ref|ZP_02994284.1| hypothetical protein CLOSPO_01403 [Clostridium sporogenes ATCC 15579] gi|187774739|gb|EDU38541.1| hypothetical protein CLOSPO_01403 [Clostridium sporogenes ATCC 15579] Length = 349 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R G++QE++ LG++ V K+EKG + L ++ +L ++ Sbjct: 7 IKEKRSSQGLTQEQVANYLGVSTPAVNKWEKGSCYPDITILPALARLLRVDLNTLLSFKE 66 Query: 79 T-VCSDISSEENNVMDFISTP 98 +I EN ++ IST Sbjct: 67 DLSEQEIGKFENELVQIISTK 87 >gi|126700772|ref|YP_001089669.1| putative phage repressor [Clostridium difficile 630] gi|115252209|emb|CAJ70048.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 163 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R + MS+++L +G + + KYE+ ++ I+ L I+ Sbjct: 6 IGEKIKQYRKSINMSRDELANKIGCSVHAIAKYEQNQRMPSLDMIRKIATALSIAIN--- 62 Query: 75 DVSPTVCSDISSEENNVMDF-ISTPDGLQLN 104 +D+ + NN ++ + + L L Sbjct: 63 -KLIVEENDLDTLTNNNINLKVFDKE-LDLV 91 >gi|301793711|emb|CBW36098.1| Transcriptional regulator [Streptococcus pneumoniae INV104] Length = 290 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R++ +R L +SQ++L E GI Q Q+ + E+G G+ L +S+ L+ + Sbjct: 3 MLLATRLKNKRKELKLSQKELAE--GICEQGQISRMEQGKYSPGSELLFQLSKRLKVSMD 60 Query: 72 FFFDVSP-TVCSDISSEENNVMDFISTPD 99 +FF+ + + +I + F+ + Sbjct: 61 YFFEDTEVSSLENIDKFKELSKKFLDERE 89 >gi|295110993|emb|CBL27743.1| Predicted transcriptional regulator with C-terminal CBS domains [Synergistetes bacterium SGP1] Length = 140 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 39/82 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RR LGM+QE+L LG+T + + E V + + L I+ L + Sbjct: 4 IGANIKARRRALGMNQEELARKLGVTQANISRIESSVKGLSSDMLLPIASALSCDVRELL 63 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + +++S+ + F++ Sbjct: 64 GLKCDDRTELSALGEDARTFVT 85 >gi|262402586|ref|ZP_06079147.1| putative transcriptional regulator [Vibrio sp. RC586] gi|262351368|gb|EEZ00501.1| putative transcriptional regulator [Vibrio sp. RC586] Length = 102 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 9/96 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G++Q+ LG +G+ ++ YEKG + L+ ++E L P+++F Sbjct: 10 RLKEARKKAGITQKDLGIRIGMEPSSASGRMNHYEKGRHVPDLGTLERMAEELNVPLNYF 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 F +++S+E V+D +S + L + Sbjct: 70 F-----CRNELSAELACVIDKMSDEEKAALLDSLSR 100 >gi|260663657|ref|ZP_05864546.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260551883|gb|EEX24998.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 115 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R +SQ LG+ +G++ V +E ++ + ++E+ E + Sbjct: 12 VMIGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTEPSSTYVTKLAELFEVSTDY 71 Query: 73 FFD 75 D Sbjct: 72 LLD 74 >gi|225570465|ref|ZP_03779490.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] gi|225160662|gb|EEG73281.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] Length = 194 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+++ R+ ++QE+L + ++ + + E+ + + L + +VL + I+ Sbjct: 16 MDIGKKLKELRIAKDLTQEELADRAELSKGFISQLERDLTSPSIATLVDLLQVLGTTINE 75 Query: 73 FFDVSPTV 80 FF P Sbjct: 76 FFSEDPEE 83 >gi|183980814|ref|YP_001849105.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174140|gb|ACC39250.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 474 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDVKV---RQKIIELVRSIV 127 T E D + + ++ + V R+ I + Sbjct: 65 SSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSAHPSLARAMVNLHRRYRITTAQLAA 124 Query: 128 SSEKKYR 134 ++E++Y Sbjct: 125 ATEERYS 131 >gi|118619629|ref|YP_907961.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571739|gb|ABL06490.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 474 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDVKV---RQKIIELVRSIV 127 T E D + + ++ + V R+ I + Sbjct: 65 SSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSAHPSLARAMVNLHRRYRITTAQLAA 124 Query: 128 SSEKKYR 134 ++E++Y Sbjct: 125 ATEERYS 131 >gi|326801902|ref|YP_004319721.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326552666|gb|ADZ81051.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 114 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R G+SQ + L I + Q E G+ R+ RL+ I+ +++ +S F+ S Sbjct: 9 QIKSHRKAKGLSQGDMANKLNIVLKTYQNIESGITRLDIERLKQIASLIDLNLSTVFNQS 68 Query: 78 PTVCSDISSEENNVMDFISTPDG 100 P + + E+ + + Sbjct: 69 PETMAGRNIEKELYHKLLMEKET 91 >gi|317495181|ref|ZP_07953551.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] gi|316914603|gb|EFV36079.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] Length = 181 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ ++QE+LGE ++ + + E+ + +I EVL FF Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILEVLGCAPKDFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D T S E+ + T +G L Sbjct: 64 DKESTSQKVYYSLEDQ-TSYEETDEGYILT 92 >gi|300312341|ref|YP_003776433.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075126|gb|ADJ64525.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 115 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 12/121 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ G+SQ +LG+ L + + E G G L + +++ Sbjct: 6 IGGRIKEVRLANGLSQRELGQRLDTSTGHISWLEAGKAMPGGELLLQLHREFSVDLNWL- 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ EE + + QL ++ ++ D++ R+ + L S V EKK Sbjct: 65 ---------LTGEEGEPGVMETDEEVRQLVDHYCRV-DLQGREILRSLA-SYVGREKKPS 113 Query: 135 T 135 T Sbjct: 114 T 114 >gi|312141162|ref|YP_004008498.1| transcriptional regulator [Rhodococcus equi 103S] gi|325674016|ref|ZP_08153706.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|311890501|emb|CBH49819.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555281|gb|EGD24953.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 469 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGARLRQLRTERGLSQAALAKTLDISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 F------------DVSPTVCSDISSEENNVMDFISTPDGLQ 102 +V+ I ++ + + +S+ GL Sbjct: 65 SSQDDTRLIAELREVALDKDMGIDADAQEIAEMVSSHPGLA 105 >gi|290474343|ref|YP_003467222.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] gi|289173655|emb|CBJ80435.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] Length = 121 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 42/76 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+SQ +LG+ + + + ++E+G +R G+ L+ +++VL+ + + Sbjct: 11 QRLRELRRQKGLSQSELGKLAELHYTHIGRFERGTSRPGSDTLKRLADVLDVTSDYLLEG 70 Query: 77 SPTVCSDISSEENNVM 92 + T + E+ ++ Sbjct: 71 AETDAAKARFEDRELL 86 >gi|284800921|ref|YP_003412786.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284056483|gb|ADB67424.1| transcriptional regulator [Listeria monocytogenes 08-5578] Length = 108 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK ++ R+ GM+Q LG L I+ + KYE G L+ I+++ F Sbjct: 3 GKILKTLRINRGMTQADLGSKLNISKVSISKYENGNQFPDTDTLKRIADIFNVSTDFLLG 62 Query: 76 VSPTVCSDISSEE 88 + +++ ++ Sbjct: 63 REEAIPQNLAFDD 75 >gi|257468521|ref|ZP_05632615.1| LexA repressor [Fusobacterium ulcerans ATCC 49185] gi|317062781|ref|ZP_07927266.1| LexA repressor [Fusobacterium ulcerans ATCC 49185] gi|313688457|gb|EFS25292.1| LexA repressor [Fusobacterium ulcerans ATCC 49185] Length = 212 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RI+ +R L +SQE+L E +G + + K E+G+ + S++ + L++ S Sbjct: 1 MTIGERIKKKREELKLSQEQLAEIMGYKSKTSIHKAEQGITDLPQSKIIEFARALKTTPS 60 Query: 72 FFF 74 + Sbjct: 61 YLM 63 >gi|239627852|ref|ZP_04670883.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239517998|gb|EEQ57864.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 146 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 46/94 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG RI+ RR L ++Q+ + GI+ + + E+G + L +S++L++ I Sbjct: 4 IDKMVGIRIKTRRKELNLTQKDVYAATGISNGNLSEIERGNVLPSSKALVSLSKLLQTSI 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + S + +N+ + + +L Sbjct: 64 DWILTGEASIIDNSSPKTSNIEYSLKLNESEELI 97 >gi|160945560|ref|ZP_02092786.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium prausnitzii M21/2] gi|158443291|gb|EDP20296.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium prausnitzii M21/2] Length = 120 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 16/121 (13%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I +GK+I+ R +GM+Q++L ++ + + E G L I VL Sbjct: 3 MPNADAIALGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S + + ++S E+ ++ D + L ++R+ ++E RS+ Sbjct: 63 --PLS----LDSIINPNLSELESECREW----DAIYLA------CPPEMRKTLLEATRSL 106 Query: 127 V 127 Sbjct: 107 A 107 >gi|251811388|ref|ZP_04825861.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|251805137|gb|EES57794.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|319399894|gb|EFV88140.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] gi|320142644|gb|EFW34450.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 108 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K+I+ R +QE+L E L + Q + K+E+G++ L +S++ + Sbjct: 2 ISKQIKDLRKQHNYTQEELAEKLNTSRQTISKWEQGISEPDLIMLMQLSQLFSVSTDYLI 61 Query: 75 DVSPTVCSDISSE--ENNVMDFISTP 98 S + + E N F+S Sbjct: 62 TGSDNIIKKDNKSYYEMNFWAFMSEK 87 >gi|228952237|ref|ZP_04114326.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807365|gb|EEM53895.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 146 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R G SQE + + +G+T Q + K+E + L +SE+ + Sbjct: 1 MNLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + I S+ + Sbjct: 61 LIKGNQDFKKKIHSDAED 78 >gi|225027560|ref|ZP_03716752.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353] gi|224955076|gb|EEG36285.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353] Length = 180 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+ I R L ++Q++L E LG+T + V K+E G + ++ + + L I Sbjct: 18 IKVGRFIAQNRKDLNLTQKELAEKLGVTDRAVSKWENGRSIPDVGIIESLCKELNISIGE 77 Query: 73 FFDVSP 78 FF Sbjct: 78 FFAGEK 83 >gi|210623799|ref|ZP_03294059.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] gi|210153381|gb|EEA84387.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] Length = 359 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E L I+ Q V K+E G + +L ISE+ E + Sbjct: 1 MTLSEKIMNLRKKNGWSQEELAERLDISRQSVSKWESGESVPTLEKLIRISEIFEVSTDY 60 Query: 73 FFDVS 77 Sbjct: 61 LLKDD 65 >gi|169333724|ref|ZP_02860917.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] gi|169259573|gb|EDS73539.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] Length = 197 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R GM+Q L L + + KYE LQ IS + I + + Sbjct: 3 GEKLRSLRKEHGMTQVDLANALDLDKSSIAKYESAGIIPSVDTLQKISALFNVSIDYLLN 62 Query: 76 VSPTVCSDI 84 +++ Sbjct: 63 APFGDINNV 71 >gi|154503786|ref|ZP_02040846.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149] gi|153795886|gb|EDN78306.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149] Length = 262 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR RR L +S+ +L + +T + YE GV+ L + L+ ++ Sbjct: 1 MKIGNQIRHRRTELNLSRGELANKIQVTPSAIANYENGVSYPKPDILVALMNALDVDANY 60 Query: 73 FF 74 + Sbjct: 61 LY 62 >gi|312197651|ref|YP_004017712.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311228987|gb|ADP81842.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 175 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 32/86 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R +S L G+ + + E GV L ++ LE P++ Sbjct: 9 VGARLRATRQARDLSVGALAARAGVGKGSLSEIENGVRNPTLGTLYALAGALEVPLATLL 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 P V ++D PDG Sbjct: 69 ADRPGVEVASPGIGARLLDATRHPDG 94 >gi|260437982|ref|ZP_05791798.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809608|gb|EFF68813.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 129 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S + L E GI+ + +YE ++++ + L+ I VL S Sbjct: 1 MIIGQKIKELRIKKGISVDALAEATGISRATLYRYENASIHKIPVACLESICRVLGVKTS 60 Query: 72 FFFDV-SPTVCSDISSEENNVMDFIS 96 + ++ NN + +S Sbjct: 61 DLMEDTDSNQLEELPQAFNNPQEALS 86 >gi|210617016|ref|ZP_03291351.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787] gi|210149539|gb|EEA80548.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787] Length = 163 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G I+ R G+SQ+++ + L I + YE A ++ +S++LE Sbjct: 7 IQIGSTIKELRKAKGISQKEMSKLLDIPYSTYSNYENNNREPSADVIKKVSDILEISTDS 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP----------DGLQLNRYFIQID 111 + + T E + ++ ++L +YF +++ Sbjct: 67 LIETAKTKSKTFIDEIDMYVEKFQKDIAERGYNREMGDIELLKYFRKLN 115 >gi|254386053|ref|ZP_05001368.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] gi|194344913|gb|EDX25879.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] Length = 509 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L + LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|125622890|ref|YP_001031373.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124491698|emb|CAL96617.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300069628|gb|ADJ59028.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 107 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ R + +SQE+L + L I+ Q + K+E G + +L +SE+ + + Sbjct: 1 MEISEIIKENRKLKNLSQEELAKELHISRQSISKWETGKSLPTTDQLILLSEIFDCSLDT 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + E ++ Sbjct: 61 LLKGDKKMEEKVKHEIDD 78 >gi|325912400|ref|ZP_08174795.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|325475742|gb|EGC78913.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 109 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R++ ++Q++L G+T ++ YE G +LQ ISE + IS + Sbjct: 4 GKKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISETFDCDISALIN 63 Query: 76 VSPTVCSDISS 86 P +I Sbjct: 64 HEPNSIFEIMH 74 >gi|313114406|ref|ZP_07799934.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255] gi|310623277|gb|EFQ06704.1| putative repressor LexA [Faecalibacterium cf. prausnitzii KLE1255] Length = 205 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ LRR LG+SQE+L + +G + + K EKG+N + S+++ ++ LE+ ++ + Sbjct: 7 RLHLRRKELGLSQEELAQRMGYRSKSSITKLEKGINDLPQSKVEELAAALETTPAYLLGL 66 Query: 77 S 77 Sbjct: 67 D 67 >gi|255024118|ref|ZP_05296104.1| transcription regulator, putative [Listeria monocytogenes FSL J1-208] Length = 110 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSE 87 FFD I E Sbjct: 61 FFDEEEHNQKVIYGE 75 >gi|226313174|ref|YP_002773068.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226096122|dbj|BAH44564.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 120 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 35/80 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R +QE+ + ++ Q+V +E+ + I+++ + + Sbjct: 7 VGQRIRKLRKANNWTQEQFANRVNVSPQKVSNWERDYTSPSVEDIARIAQICNTESDYIL 66 Query: 75 DVSPTVCSDISSEENNVMDF 94 + + + + ++ +F Sbjct: 67 TGRTSPLTSSAKSDKHLSEF 86 >gi|145595873|ref|YP_001160170.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305210|gb|ABP55792.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 407 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 8/113 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFF 73 +G+R+ R MSQ+ + LG + V K E+GV R+ S + I++ L + Sbjct: 6 IGRRVAYWRGRRKMSQQVFADRLGKSKSWVDKVERGVRRLDKFSVIYEIADTLRVDVQLL 65 Query: 74 FDVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P SD + ++ V + + + + +R+ + Sbjct: 66 LGKDPERRSDALNCIDQTEVQEIRAALERYDAMSAYFDAAPYPPPLPDMRKAV 118 >gi|78043621|ref|YP_360682.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995736|gb|ABB14635.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 127 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R L +S+E+ E LG++ V + E+G ++ L +I++ L + + Sbjct: 8 IGQRIREEREKLELSREEFAEILGLSDYYVGQLERGERQMSLPVLVNIAQCLHVSLDYLI 67 Query: 75 DVSPTVCSDISSEENNVMDFIS--TPDGLQLN 104 S E + +F+ P+ L L Sbjct: 68 FGSTPFEPSGVQENISFYNFLQNLDPELLSLL 99 >gi|91976769|ref|YP_569428.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91683225|gb|ABE39527.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] Length = 106 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 1/106 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPIS 71 + G+RI+ R G++ ++L + G + + + E K R A +L I+ L + Sbjct: 1 MKFGQRIKDLRTKKGLTLDQLAQETGSSKSYIWELENKNPPRPSAEKLSAIAGALGVTVD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + F ++ + + R +I D K R+ Sbjct: 61 YLFGADTQTLNEAEDTAFFRQYSGLPEETRRQIREMARILDTKTRK 106 >gi|302340085|ref|YP_003805291.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM 11293] gi|301637270|gb|ADK82697.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM 11293] Length = 394 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+++R +R++ G S +KL + L IT + KYE A L +++V + Sbjct: 2 IGEKLRQKRIMSGWSLQKLADKLEQQGTRITRAALSKYELEKATPNALTLYALAQVFDVK 61 Query: 70 ISFFFDVSPTVCS 82 +FF + Sbjct: 62 TDYFFSNPSATVT 74 >gi|295110461|emb|CBL24414.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 315 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R ++QE+L E G++ + V ++E G N S L ++E + + Sbjct: 6 IGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGTNLPDLSILVELAEYYDVEMRELL 65 Query: 75 DVSPTVCSDISSEEN 89 D + + +E Sbjct: 66 DGERSQTMNKEMKET 80 >gi|290581291|ref|YP_003485683.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254998190|dbj|BAH88791.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 228 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR LG+SQ + + LGI+ +E G + L ++ +L+ ++F Sbjct: 5 QKLKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYF 61 >gi|229815891|ref|ZP_04446215.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] gi|229808586|gb|EEP44364.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] Length = 201 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 VG RIR+ R G++Q +L +T Q V +E+G LQ +++ L + + Sbjct: 7 VGSRIRILREAAGLTQSELAATAYVTRQSVGNWERGNTLPDVQSLQLVAKALNTKVDGLL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 D P + + + + ++ + Sbjct: 67 GDGLPDMLEETAEARRQLTHCLAALGAI 94 >gi|50196919|ref|YP_052614.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165871721|ref|ZP_02216366.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167638961|ref|ZP_02397235.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170707968|ref|ZP_02898417.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|177653556|ref|ZP_02935730.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190566543|ref|ZP_03019460.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229601932|ref|YP_002865577.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] gi|254734209|ref|ZP_05191922.1| hypothetical protein BantWNA_03453 [Bacillus anthracis str. Western North America USA6153] gi|254753484|ref|ZP_05205520.1| hypothetical protein BantV_13483 [Bacillus anthracis str. Vollum] gi|254758581|ref|ZP_05210608.1| hypothetical protein BantA9_09739 [Bacillus anthracis str. Australia 94] gi|50082981|gb|AAT70122.1| hypothetical protein GBAA_1022 [Bacillus anthracis str. 'Ames Ancestor'] gi|164712622|gb|EDR18154.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167513091|gb|EDR88463.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170127128|gb|EDS96006.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|172081360|gb|EDT66434.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190562095|gb|EDV16063.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229266340|gb|ACQ47977.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|1196926|gb|AAA88585.1| unknown protein [Streptococcus mutans] Length = 228 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR LG+SQ + + LGI+ +E G + L ++ +L+ ++F Sbjct: 5 QKLKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYF 61 >gi|24380369|ref|NP_722324.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24378389|gb|AAN59630.1|AE015025_2 putative transcriptional regulator [Streptococcus mutans UA159] Length = 228 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ RR LG+SQ + + LGI+ +E G + L ++ +L+ ++F Sbjct: 5 QKLKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYF 61 >gi|116494509|ref|YP_806243.1| double-stranded beta-helix-like protein [Lactobacillus casei ATCC 334] gi|191637947|ref|YP_001987113.1| hypothetical protein LCABL_11700 [Lactobacillus casei BL23] gi|227535519|ref|ZP_03965568.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631268|ref|ZP_04674299.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116104659|gb|ABJ69801.1| Double-stranded beta-helix related protein [Lactobacillus casei ATCC 334] gi|190712249|emb|CAQ66255.1| Double-stranded beta-helix related protein [Lactobacillus casei BL23] gi|227186841|gb|EEI66908.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525733|gb|EEQ64734.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382018|gb|AEA53494.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei LC2W] gi|327385175|gb|AEA56649.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei BD-II] Length = 179 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R+ ++QE+LGE +T + + E + I VL + Sbjct: 1 MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF P + E++ + ++ G +L Sbjct: 61 FFREEP--KDSLVYHEDDQVTYLDEEKGYRL 89 >gi|260843874|ref|YP_003221652.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|257759021|dbj|BAI30518.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|323186644|gb|EFZ71972.1| HTH-type transcriptional regulator dicA [Escherichia coli RN587/1] Length = 135 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 7/112 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF--F 73 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ F Sbjct: 7 GARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 D I + + ++ T D +L + F + D + ++ ++ +R+ Sbjct: 67 GDEDKQPGEPIPNNQPAIL----TEDQKELLQLFDALPDSE-QKALLSEMRA 113 >gi|302537531|ref|ZP_07289873.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] gi|302446426|gb|EFL18242.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] Length = 509 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L + LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|257413803|ref|ZP_04744284.2| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|257202203|gb|EEV00488.1| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|291538784|emb|CBL11895.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis XB6B4] Length = 183 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPIS 71 +++GKR++ R+ G++Q++L + +T + + E+ N L I + L +P Sbjct: 5 MDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPAE 64 Query: 72 FFFDVSPTV 80 FF D P Sbjct: 65 FFTDEEPEQ 73 >gi|295105300|emb|CBL02844.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 118 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 16/121 (13%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I +GK+I+ R +GM+Q++L ++ + + E G L I VL Sbjct: 1 MPNADAIALGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S + + ++S E+ ++ D + L ++R+ ++E RS+ Sbjct: 61 --PLS----LDSIINPNLSELESECREW----DAIYLA------CPPEMRKTLLEATRSL 104 Query: 127 V 127 Sbjct: 105 A 105 >gi|302541927|ref|ZP_07294269.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459545|gb|EFL22638.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 509 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 9 IGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|13476145|ref|NP_107715.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14026905|dbj|BAB53501.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 227 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 37/80 (46%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K + D+ VG+R+R R+ +S +L G++ + + E+G++ + + ++ Sbjct: 34 EKPKDDADVRVGRRVRALRLERRLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAA 93 Query: 65 VLESPISFFFDVSPTVCSDI 84 L+ S +D+ Sbjct: 94 ALDIEPSALIADGNDAVNDL 113 >gi|30260593|ref|NP_842970.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47777813|ref|YP_022528.1| prophage lambdaba04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183444|ref|YP_026696.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] gi|65317858|ref|ZP_00390817.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|254686819|ref|ZP_05150677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724894|ref|ZP_05186677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A1055] gi|254738955|ref|ZP_05196657.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254756199|ref|ZP_05208228.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762018|ref|ZP_05213867.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30253961|gb|AAP24456.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47551518|gb|AAT35262.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177371|gb|AAT52747.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] Length = 114 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+ ++ R G++QE+L L ++ Q++ +E + L I+ + Sbjct: 2 RHFGQILKKLRKSRGLTQEQLSHKLNLSRSQIKNWETDRYQPDIDTLVIIASFFNVSVDA 61 Query: 73 FFDVSPTVCSDISSE 87 + + +E Sbjct: 62 LIGFTNEFDEEPLTE 76 >gi|312113826|ref|YP_004011422.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311218955|gb|ADP70323.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 199 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 RIR R+ G+S +L + +GI+ + + E G + S+++ ++ L P++ Sbjct: 20 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGARGLHLSKMEALAGALGVPVT 74 >gi|302672043|ref|YP_003832003.1| AbrB family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396516|gb|ADL35421.1| transcriptional regulator AbrB family [Butyrivibrio proteoclasticus B316] Length = 139 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R +L M+QE + E LG+T Q V K+E G + + + ++++ + + P Sbjct: 10 RKVLRMTQEDVAEKLGVTRQSVAKWESGESIPDLDKCKQLADIFGVSLDDLANYEPEENM 69 Query: 83 DISSEENNVMDF 94 + F Sbjct: 70 GFAVPPKGKHLF 81 >gi|257877826|ref|ZP_05657479.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811992|gb|EEV40812.1| predicted protein [Enterococcus casseliflavus EC20] Length = 209 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 8/70 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--- 71 +GK I+ R M+Q+ L + L +T Q V K+E+ + L +S + Sbjct: 4 LGKNIKELRQSKKMTQKSLAKMLNVTPQAVSKWERNESNPDIQTLISLSNYFNVSVDEML 63 Query: 72 -----FFFDV 76 FF+ Sbjct: 64 GRKRPTFFET 73 >gi|228956235|ref|ZP_04118111.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803444|gb|EEM50187.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 105 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R L M Q +L + +G+ + + YE +++I+ V + Sbjct: 2 GSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIMG 61 Query: 76 VSPTVCSDISSEENNVMD 93 +S D + + D Sbjct: 62 LSKHKTFDEETSKKITDD 79 >gi|228926172|ref|ZP_04089247.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932427|ref|ZP_04095308.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|254725583|ref|ZP_05187365.1| hypothetical protein BantA1_24526 [Bacillus anthracis str. A1055] gi|228827117|gb|EEM72870.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833425|gb|EEM78987.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 149 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|283796930|ref|ZP_06346083.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075340|gb|EFE12704.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 111 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 17/121 (14%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +GKR++ R LG+SQE+L E G+T + E+G++ +L + LE Sbjct: 2 IDKRIGKRVKQCRERLGISQEELAEKTGLTANYISTVERGMSFPRCEKLIILLNGLEVSA 61 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 F DV S SSE + + +S + +++I+++V ++ Sbjct: 62 DAIFCDVLEHSTSYKSSELSEKLASLS----------------PQAQKRILQMVELMIQQ 105 Query: 130 E 130 E Sbjct: 106 E 106 >gi|126736840|ref|ZP_01752575.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6] gi|126721425|gb|EBA18128.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6] Length = 165 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 7/85 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF----- 73 IR R+ G SQE+L E GI+ + +Q+ E+G N L+ I+ VLE S Sbjct: 6 IRKLRLEKGYSQEQLAEMAGISTRTLQRIERGAN-ASPETLKCIASVLEIDFSELRKEPD 64 Query: 74 -FDVSPTVCSDISSEENNVMDFIST 97 +P ++ ++E ++++ Sbjct: 65 MTSDTPASLPELETQEREALEYVRD 89 >gi|312887017|ref|ZP_07746621.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300329|gb|EFQ77394.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 137 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 20/131 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G +IR R I G+SQ+ L IT Q V K E+ V L I+E+L + Sbjct: 11 IHIGPKIRRLRQIKGISQKAFASELQITQQAVSKIEQSEI-VNEETLGKIAEILGVSMEA 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL----QLNRYFIQIDDVKVRQKIIELVRSIVS 128 + ++ + +FI+T + + + ++ I+ KI EL ++ Sbjct: 70 IVNFD---------DDASFNNFINTNEVINQRCDVTNHYQSIE------KITELYERLLK 114 Query: 129 SEKKYRTIEEE 139 SE + + ++ Sbjct: 115 SEIEKNQLLKD 125 >gi|303241220|ref|ZP_07327727.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302591231|gb|EFL60972.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 71 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG IR R+ M+Q++L + L I+ + + K+E+G S + +S++L + Sbjct: 6 VGNIIRKTRLEQKMTQKQLADKLDISDKAISKWERGSGNPDISLILKLSDILGIDV 61 >gi|160946034|ref|ZP_02093260.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium prausnitzii M21/2] gi|158443765|gb|EDP20770.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium prausnitzii M21/2] Length = 95 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R +SQEKL E LG++ + + E+G + L I+E + + Sbjct: 8 IGNRIFTLRTNAKLSQEKLAEKLGVSHRHLGDLERGSSNGSVKILIDIAEYFHVSMDYLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 +E +D + GL Sbjct: 68 LGRDPSRDQFQNELQAAIDHLEKIKGL 94 >gi|251789530|ref|YP_003004251.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538151|gb|ACT06772.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI L R L ++Q++L E LGI Q + YE G +V AS L ++ +L + Sbjct: 21 KELGARIALARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQLATILNLSLD 79 >gi|226329569|ref|ZP_03805087.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] gi|225202755|gb|EEG85109.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] Length = 161 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + P + +G +++ R +S +L GI+ + K E G + L+ I+ Sbjct: 2 NSQPPKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDF 94 L P+ F + + + V D+ Sbjct: 62 IALGFPLGDLFSFTREEYPRLERHKPIVGDY 92 >gi|126737596|ref|ZP_01753326.1| transcriptional regulator, XRE family with cupin sensor domain [Roseobacter sp. SK209-2-6] gi|126720989|gb|EBA17693.1| transcriptional regulator, XRE family with cupin sensor domain [Roseobacter sp. SK209-2-6] Length = 199 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 9/96 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G ++ R++ G++ +L ++ + K E+G S L+ +++ P Sbjct: 13 PLDHLIGAAVKAHRVLAGLTLAELSAKAKVSPAMISKIERGQVSASLSSLEALAQATGVP 72 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + FF + E + F++ +G+ + R Sbjct: 73 LINFF---------AGTVERTDVSFVAAGEGMTVQR 99 >gi|327441616|dbj|BAK17981.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 260 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R SQE L E L + Q + K+E G ++ I + E I + Sbjct: 1 MEFGEKLFKLRKEKEYSQEALAEKLNTSRQAISKWENGQGFPETEKILMIGNIFEVSIDY 60 Query: 73 FFDVS 77 S Sbjct: 61 LLKDS 65 >gi|297158608|gb|ADI08320.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 206 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Query: 2 VGNKKIPNPV----DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +K +P P + +VG+R+ R + MS L E ++ + + E+G + S Sbjct: 9 TESKSVPEPPAERPESDVGRRVHAFRRLRRMSLRALAERSDVSGSFLSQLERGRSSASIS 68 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS 96 L I+ L ++ FD S + + +++ V+D++ Sbjct: 69 TLARIASALGITMAELFDTSAIGPTPLRAQDRPVLDWVG 107 >gi|229548807|ref|ZP_04437532.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|229306036|gb|EEN72032.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] Length = 101 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I + R + M+Q+ L +G++ Q + + E+ I+ V I F Sbjct: 32 IHVYRAMARMTQQDLANRIGVSRQTIIQLERNKYNPSLLLAHDIANVFGVTIDDVFTFKE 91 Query: 79 TVCSDISSEE 88 T+ D+ E Sbjct: 92 TLNDDVEQEA 101 >gi|221635639|ref|YP_002523515.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] gi|221157546|gb|ACM06664.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] Length = 506 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R RR G+SQ++L E GI+ Q + E G + ++ L + F + Sbjct: 144 RVRERRRSCGLSQQQLAERAGISRQTLVAIEAGRLTPSVAVALRLARALGCAVEELFSFA 203 Query: 78 PTVCSDI 84 + Sbjct: 204 EPPLLEA 210 >gi|170756399|ref|YP_001781169.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121611|gb|ACA45447.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 370 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 4 LLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTIDT 63 Query: 73 FFDVSPTVCSD 83 + + + Sbjct: 64 LLNFKIELSDE 74 >gi|167628192|ref|YP_001678691.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] gi|167590932|gb|ABZ82680.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] Length = 193 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 6/94 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +SQ +LG LG++ + YEK L +++ F + Sbjct: 7 ERLRGLRKGRKLSQNELGAALGLSRGSISYYEKQSRTAPIDVLYVVADYFNVSADFLLGL 66 Query: 77 SPTVCSDIS------SEENNVMDFISTPDGLQLN 104 DI+ + ++ + L Sbjct: 67 KEEPDPDIAQLKPGPHRSSLYPPPLAAKEAAALV 100 >gi|149275965|ref|ZP_01882110.1| transcriptional regulator [Pedobacter sp. BAL39] gi|149233393|gb|EDM38767.1| transcriptional regulator [Pedobacter sp. BAL39] Length = 101 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ IR R I M Q L +GIT Q V E+ +G+ RLQ I+ L+ IS Sbjct: 6 VHLGENIRAIRRIKNMKQATLARQIGITQQAVSSMER-TPHIGSRRLQKIARALDVTISS 64 Query: 73 FFDVSPTV 80 ++ TV Sbjct: 65 IWEFKETV 72 >gi|294624392|ref|ZP_06703085.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601307|gb|EFF45351.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 105 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+ IRL R G+SQ + + + E S + I+E L P+ Sbjct: 1 MNVGQAIRLCRTQRGVSQSAIASRANCSVSYLSMLENNKRDPTLSTVTQIAEALRVPVGL 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 F V +++ + + NV D + Sbjct: 61 LF-VLAADQNELGAIDENVADQL 82 >gi|153012131|ref|YP_001373341.1| cupin 2 domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151564019|gb|ABS17512.1| Cupin 2 conserved barrel domain protein [Ochrobactrum anthropi ATCC 49188] Length = 202 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 11/142 (7%) Query: 2 VGNKKIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + P P D ++G RIRLRR LG++ L E G++ + + E+G+ L Sbjct: 9 ISPTSEPAPNDAGDIGARIRLRRQTLGLTLGYLSEVSGLSTGALSQIERGLVSPTVRTLY 68 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK-- 118 I+EVL + D P + + V+ P+ L I K R Sbjct: 69 TIAEVLSMSPAQLID--PQGFAAAARANPYVLRAGEQPEVLN---AGGVI---KHRASPE 120 Query: 119 IIELVRSIVSSEKKYRTIEEEC 140 +IE ++S + EEC Sbjct: 121 LIETMKSFAVRIIPGGSSGEEC 142 >gi|315612296|ref|ZP_07887210.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315689|gb|EFU63727.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 167 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 5 EKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLLLD 64 Query: 77 SPTVCSDIS 85 + S + Sbjct: 65 ENSEKSSTA 73 >gi|293364378|ref|ZP_06611104.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307702656|ref|ZP_07639608.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|291317224|gb|EFE57651.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623772|gb|EFO02757.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] Length = 165 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 5 EKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLLLD 64 Query: 77 SPTVCSDIS 85 + I Sbjct: 65 ENSEKGSIE 73 >gi|332982996|ref|YP_004464437.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700674|gb|AEE97615.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 222 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R ++ L + GI+ + E G + RL ++EVL + +S+ Sbjct: 1 MSVGERLKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSNPSLKRLSELAEVLGTTVSY 60 Query: 73 FF-DVSPTVCSD--ISSEENNVMDFIS---------TPDGLQLNRYFIQIDDVKVRQKII 120 + P + SD + E N + + T + L L+ + + RQ I Sbjct: 61 LLGEDEPNIVSDNNTAMEIANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEEGNRQPDI 120 Query: 121 ELVRSIVS 128 +L + + Sbjct: 121 KLTKKLAD 128 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 24/61 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R S + E LG++ Q E+G + + ++++ + Sbjct: 77 MEIANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEEGNRQPDIKLTKKLADIFNVSADY 136 Query: 73 F 73 Sbjct: 137 L 137 >gi|312114539|ref|YP_004012135.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219668|gb|ADP71036.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 206 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 RIR R+ G+S +L + +GI+ + + E G + S+++ ++ L P++ Sbjct: 27 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGARGLHLSKMEALAGALGVPVT 81 >gi|238924521|ref|YP_002938037.1| hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|238876196|gb|ACR75903.1| Hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|291525206|emb|CBK90793.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291529334|emb|CBK94920.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 179 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPIS 71 +++G R++ R+ G++Q++L + +T + + E+ N L I + L +P Sbjct: 1 MDIGHRMKELRIQYGLTQQELADRAELTKGFISQLERNQNSPSVGTLLDIIQCLGMTPAE 60 Query: 72 FFFDVSPTV 80 FF D P Sbjct: 61 FFTDSEPEQ 69 >gi|212696735|ref|ZP_03304863.1| hypothetical protein ANHYDRO_01277 [Anaerococcus hydrogenalis DSM 7454] gi|212676272|gb|EEB35879.1| hypothetical protein ANHYDRO_01277 [Anaerococcus hydrogenalis DSM 7454] Length = 51 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 M+Q +L + LG+ V +E+ N + ++E+ + P+S+FFD Sbjct: 1 MTQAQLAKKLGVAPTTVSSWERNDNNPLMDNITLMAEIFDVPVSYFFD 48 >gi|212640211|ref|YP_002316731.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561691|gb|ACJ34746.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 121 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR+ R MSQ++L + + +QKYE G + + L+ P S Sbjct: 4 IGENIRMHREQRNMSQQELAMKVRVGVATIQKYESGEQVPDTPTILKLCTALDVPASELL 63 Query: 75 DVSPTVCSDISSEE 88 + + S E Sbjct: 64 ERADVSNSSSLDPE 77 >gi|282852578|ref|ZP_06261920.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556320|gb|EFB61940.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 334 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 18/120 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++S++ + Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSKLFGVTTDY 60 Query: 73 F-------FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI--DDVKVRQKIIELV 123 F++ +D + + +S +L + ++ K+R I L+ Sbjct: 61 LLKSGEPSFELKNEDIND-----KDKLPVLSD----ELVKKYLAASQKSSKLRALAIALI 111 >gi|260854614|ref|YP_003228505.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|257753263|dbj|BAI24765.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] Length = 215 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 5 LGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + VS S + S + ++S + + Sbjct: 65 YGVSSPELSFVQSTSGTKIPYLSWGEAI 92 >gi|229553142|ref|ZP_04441867.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229313438|gb|EEN79411.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|259650346|dbj|BAI42508.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 104 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 18/111 (16%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 N+GK + +R + ++ EKL E G++ + + E+G VN + +L I+ L+ + Sbjct: 5 NIGKLVHQQRRSMNLTIEKLAERSGVSVSLISRMERGDVNNISVKKLTDIARALDMQVGD 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 FF +S + L L +Y ++ + + R + E++ Sbjct: 65 FFIAPE----------------MSDINTLALVKYLTRLPENE-RAHVSEVL 98 >gi|193071379|ref|ZP_03052295.1| putative repressor protein [Escherichia coli E110019] gi|192955295|gb|EDV85782.1| putative repressor protein [Escherichia coli E110019] Length = 219 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 9 LGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLL 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + VS S + S + ++S + + Sbjct: 69 YGVSSPELSFVQSTSGTKIPYLSWGEAI 96 >gi|154503168|ref|ZP_02040228.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC 29149] gi|153796162|gb|EDN78582.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC 29149] Length = 154 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGK+I+ R L +SQE+L + +T Q + +E G N + L +S++ + + Sbjct: 1 MDVGKQIKKFRQDLKLSQEELASKIFVTRQTISNWENGKNYPDVNSLVMLSQLFNTSLDI 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + + E+++V F Sbjct: 61 LVKGD-VIEMEKQVEQDDVRRFKRD 84 >gi|15894837|ref|NP_348186.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024511|gb|AAK79526.1|AE007666_1 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508975|gb|ADZ20611.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 118 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 10/98 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++++ R + Q + + +G TFQ++ +E G RV L + E+ + Sbjct: 6 IGRKLKAARENANLKQSDVAKIIGSTFQKISSFETGRTRVDLETLIRLCEIYNVDADYI- 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +S+++ N + P+ L F Q+ D Sbjct: 65 ---------LSTDKKNSNNLTLKPEESNLIVKFRQLPD 93 >gi|116669150|ref|YP_830083.1| transcriptional regulator [Arthrobacter sp. FB24] gi|116609259|gb|ABK01983.1| transcriptional regulator [Arthrobacter sp. FB24] Length = 495 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 12/130 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+R+R R M+ + L +G Q+ E G LQ ++ L I Sbjct: 25 ISLGRRVRHLRKAAAMTLDDLSAAVGTAPSQLSLIENGKREPKLGLLQQLAAALNVSIDQ 84 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---QKIIELVRSIVSS 129 P E + L L K+R + ++++ S+V Sbjct: 85 LLGAEPPNRRAALEIELERYQRSPLYESLNL---------PKIRISSRLPMDVLESMVGL 135 Query: 130 EKKYRTIEEE 139 + + E Sbjct: 136 QHELERRLNE 145 >gi|253578955|ref|ZP_04856226.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849898|gb|EES77857.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 184 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R + Q +LG+ + ++ Q + E+G + + ++ P + Sbjct: 1 MTIGKRIKELRTEADLLQSELGKAVAVSSQVISNIERGYTKPSTELVNRCAKYFGVPADY 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 + S +E + Sbjct: 61 LLGRTTEKYSTTEQKEAPAL 80 >gi|187776409|ref|ZP_02802465.2| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188025234|ref|ZP_02776939.2| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|189010761|ref|ZP_02809209.2| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189402468|ref|ZP_02782667.2| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189403410|ref|ZP_02795288.2| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189404368|ref|ZP_02788860.2| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189406229|ref|ZP_02827125.2| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208810492|ref|ZP_03252368.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208816709|ref|ZP_03257829.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208819596|ref|ZP_03259916.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209400359|ref|YP_002271137.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217329536|ref|ZP_03445615.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] gi|187767281|gb|EDU31125.1| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188014100|gb|EDU52222.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188998604|gb|EDU67590.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355391|gb|EDU73810.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189360762|gb|EDU79181.1| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189366046|gb|EDU84462.1| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189375816|gb|EDU94232.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208725008|gb|EDZ74715.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208731052|gb|EDZ79741.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208739719|gb|EDZ87401.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209161759|gb|ACI39192.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217317304|gb|EEC25733.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] Length = 219 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 9 LGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLL 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + VS S + S + ++S + + Sbjct: 69 YGVSSPELSFVQSTSGTKIPYLSWGEAI 96 >gi|195939798|ref|ZP_03085180.1| putative repressor protein [Escherichia coli O157:H7 str. EC4024] gi|261226405|ref|ZP_05940686.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257983|ref|ZP_05950516.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK966] Length = 214 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 4 LGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + VS S + S + ++S + + Sbjct: 64 YGVSSPELSFVQSTSGTKIPYLSWGEAI 91 >gi|15802455|ref|NP_288481.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 EDL933] gi|12516142|gb|AAG57035.1|AE005422_10 putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. EDL933] Length = 196 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 5 LGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + VS S + S + ++S + + Sbjct: 65 YGVSSPELSFVQSTSGTKIPYLSWGEAI 92 >gi|15832020|ref|NP_310793.1| repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254793674|ref|YP_003078511.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] gi|13362234|dbj|BAB36189.1| putative repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254593074|gb|ACT72435.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] Length = 215 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 5 LGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + VS S + S + ++S + + Sbjct: 65 YGVSSPELSFVQSTSGTKIPYLSWGEAI 92 >gi|331089117|ref|ZP_08338021.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406017|gb|EGG85541.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium 3_1_46FAA] Length = 135 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ RR L +SQ + E IT + K E G +S+VLE +++ Sbjct: 8 IGERIKTRRKELKLSQTDIYERCDITSGALSKIENGKTTPSVIAFYKLSQVLECDMNWL 66 >gi|259506603|ref|ZP_05749505.1| transcriptional regulator [Corynebacterium efficiens YS-314] gi|259165801|gb|EEW50355.1| transcriptional regulator [Corynebacterium efficiens YS-314] Length = 138 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLES 68 +G R+R R I G SQE+L E + ++ + E+ N S + +S L+ Sbjct: 23 LGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDV 82 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 P + I +E+ +D Sbjct: 83 PPAALLPAVGEKPQGICVDESLPVD 107 >gi|199598601|ref|ZP_03212017.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258509055|ref|YP_003171806.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|258540246|ref|YP_003174745.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|199590524|gb|EDY98614.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257148982|emb|CAR87955.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|257151922|emb|CAR90894.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] gi|328478983|gb|EGF48479.1| transcriptional regulator xre family protein [Lactobacillus rhamnosus MTCC 5462] Length = 103 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 18/111 (16%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 N+GK + +R + ++ EKL E G++ + + E+G VN + +L I+ L+ + Sbjct: 4 NIGKLVHQQRRSMNLTIEKLAERSGVSVSLISRMERGDVNNISVKKLTDIARALDMQVGD 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 FF +S + L L +Y ++ + + R + E++ Sbjct: 64 FFIAPE----------------MSDINTLALVKYLTRLPENE-RAHVSEVL 97 >gi|307129576|ref|YP_003881592.1| hypothetical protein Dda3937_01730 [Dickeya dadantii 3937] gi|306527105|gb|ADM97035.1| hypothetical protein Dda3937_01730 [Dickeya dadantii 3937] Length = 116 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+RL R+ +G++Q +LG GI +V +YEK + + + VL+ P Sbjct: 23 IGKRLRLARVNVGLTQAELGRQAGIDEESAGARVSQYEKETHAPDFKLVCRFAAVLDVPE 82 Query: 71 SFFFDVSPTVCS 82 ++F+ V + + Sbjct: 83 AYFYAVDDDLAT 94 >gi|290956608|ref|YP_003487790.1| UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] gi|260646134|emb|CBG69227.1| putative UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] Length = 509 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 9 IGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|313677598|ref|YP_004055594.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944296|gb|ADR23486.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 256 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 3/93 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + I+ R G +Q+ L + LG+ Q+ YE+G L +S++ + Sbjct: 4 INNNIKYLRKEKGWTQQDLADELGVKRPQIGSYEEGRADPRIQTLLKLSDLFNVSVDDLL 63 Query: 75 DVSPTVCSDISSEENNVMDFIST---PDGLQLN 104 + ++ + V+ + ++L Sbjct: 64 GKDLSSPMVVTKKPTKVLAITVDSQERENIELV 96 >gi|307325149|ref|ZP_07604353.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889295|gb|EFN20277.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 509 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK IR R G +Q +L E LG + V + E+G + + I E L+S I Sbjct: 9 IGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|296113347|ref|YP_003627285.1| aminotransferase class I and II [Moraxella catarrhalis RH4] gi|295921041|gb|ADG61392.1| aminotransferase class I and II [Moraxella catarrhalis RH4] Length = 546 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R++LRR LG+S E L + ++ + +E G N + S+L ++ L Sbjct: 28 GLRLKLRRKALGLSAEALASKMSELGVPVSRGAIANWECGKNGIVMSKLPILAAALGVSE 87 Query: 71 SFFFDVS 77 S+ Sbjct: 88 SYLISGD 94 >gi|296110966|ref|YP_003621347.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832497|gb|ADG40378.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 134 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI ++++ R LGMSQE + + L I+ Q + ++E G + L ++++ + + Sbjct: 2 MDILFPQQLKKYRTKLGMSQEDIADKLFISRQAISRWESGDATPDLTNLIKLTDIFDCSL 61 Query: 71 SFFFDVSPTVCSDISSEEN-NVMDFISTP 98 P +D + ++ + +F P Sbjct: 62 DSLVLGVPQQQTDTNGQDKIDNSEFTFDP 90 >gi|295694886|ref|YP_003588124.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295410488|gb|ADG04980.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 195 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 4/108 (3%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PVD +G+ +R R G + +K+ G++ + + E+G + L I+ L Sbjct: 4 PVDFSRRIGQILRSLRRDRGWTLDKMAAVTGVSKPMLGQIERGESNPTVVTLWKIATGLG 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P S F I + + DG + R + D + Sbjct: 64 VPFSTFLRDPDDPRVAIVPQSRQPG--VKDDDGGYVVRSLVTAADPQP 109 >gi|291543337|emb|CBL16446.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus sp. 18P13] Length = 110 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+RIR R G+SQEKL E G + + E+G ++ I+ ++ Sbjct: 3 DIAKIIGQRIRNYRTQKGLSQEKLAELAGCHPTYIGQLERGEKNATLESVEKIASAMDIS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +S FD S+ + D +++ + + + + + + Sbjct: 63 LSELFDKLGKSGSN--NIAAKCYDLVASKNEAEQKQLYKMLQE 103 >gi|289550028|ref|YP_003470932.1| hypothetical protein SLGD_00657 [Staphylococcus lugdunensis HKU09-01] gi|289179560|gb|ADC86805.1| hypothetical protein SLGD_00657 [Staphylococcus lugdunensis HKU09-01] Length = 112 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R G++Q++L L T Q V K+E+G A + +++++ Sbjct: 5 EQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFNITTDELLTG 64 Query: 77 SP-----TVCSDISSEENNVMDFISTP 98 ++ ++ N DF+S Sbjct: 65 ENMSNFTKELNETGTDHLNFWDFLSQK 91 >gi|238923198|ref|YP_002936713.1| hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656] gi|238925050|ref|YP_002938566.1| hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656] gi|238874872|gb|ACR74579.1| Hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656] gi|238876725|gb|ACR76432.1| Hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656] gi|291530658|emb|CBK96243.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 123 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G+ +++ R M+QE + E +G++ Q V K+E G + S L ++++ + Sbjct: 58 KSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGISV 115 >gi|158423127|ref|YP_001524419.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330016|dbj|BAF87501.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 249 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R L ++ L GI+ + K E G S LQ ++ L PI+ F Sbjct: 66 LGIQVRSIRRQLDLTVSDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVPITALF 125 Query: 75 DVSPT 79 Sbjct: 126 STFEE 130 >gi|118578963|ref|YP_900213.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501673|gb|ABK98155.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 187 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R ++ + + + +G + + + E + L I++ + I + Sbjct: 4 LNIGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLSKIAKFFDVKIGY 63 Query: 73 FFDVSPTVCS 82 FF C Sbjct: 64 FFIEDDDECG 73 >gi|332798117|ref|YP_004459616.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695852|gb|AEE90309.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 253 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R ++Q +L E G++ + + E G L+ I+ L FF Sbjct: 136 FVGYKIKKIRCERKITQAELAEKAGVSTGLIGQIESGKVEPSIKTLEKIAAALSLSPCFF 195 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD---GLQLN 104 + S + V + ++ P L+L Sbjct: 196 VSEDEELSSILKPMNPKVRELLNDPKVRSALELL 229 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G +I L R +S +L E +GI+ + + E G S L+ I++ L+ Sbjct: 72 IGAKIALIRQEKNLSLSELAEKVGISPSYLCQIESGRAMPALSTLKSIAKALDV 125 Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 IR R M+ + L + G++ + + E G + + +++ L Sbjct: 7 IRSLRQKRNMTLQDLAQQAGLSVSYLSEIELGKKQPSLETIDKLAQALNIS 57 >gi|269928755|ref|YP_003321076.1| hypothetical protein Sthe_2842 [Sphaerobacter thermophilus DSM 20745] gi|269788112|gb|ACZ40254.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM 20745] Length = 372 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ L R G+S L E +G++ + + YE+G + G L I++ L PI+FFF Sbjct: 14 RLTLARKRRGLSISALAERVGLSRRSIFNYERGRSVPGDHTLATIAQTLGFPITFFFGND 73 Query: 78 PTVCSDIS 85 S + Sbjct: 74 IEELSPDA 81 >gi|297203046|ref|ZP_06920443.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] gi|197712042|gb|EDY56076.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] Length = 509 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G+ IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|78044139|ref|YP_360516.1| prophage LambdaCh01, PBSX family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996254|gb|ABB15153.1| prophage LambdaCh01, transcriptional regulator, PBSX family [Carboxydothermus hydrogenoformans Z-2901] Length = 76 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R G++Q ++ + LGI+ + E G R+ I+ +L+ + F Sbjct: 2 NKLKQLRKANGLTQMEMAKKLGISESYYCQIENGTRRMSLKTALDIAAILKVTPNDLF 59 >gi|56807705|ref|ZP_00365580.1| COG1396: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] Length = 150 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++Q+ L E + + ++ +Q++E +++ + Q +++ + +++ Sbjct: 48 NRIKELRKEKGLTQQDLAEEIYVHYRTIQRWEN-EHKIALDQAQLLADHFDVSVAYLLGY 106 Query: 77 SPTVCSD 83 S T + Sbjct: 107 SDTTKDN 113 >gi|125974946|ref|YP_001038856.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125715171|gb|ABN53663.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 79 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R L ++Q++L + +G+ + K E G+ R + + I+++L + FFD Sbjct: 14 IKEKRAALNLTQKQLADLVGVDRTTISKIENGI-RPSVNSAKKIAQILGLDWTIFFDSDE 72 Query: 79 TVCSDIS 85 ++ + Sbjct: 73 EHQTETA 79 >gi|322377135|ref|ZP_08051627.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321281848|gb|EFX58856.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 286 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R++ +R L +SQ++L E GI Q Q+ + E+G G+ L +S+ L+ + Sbjct: 3 MLLATRLKNKRKELKLSQKELAE--GICEQGQISRMEQGKYSPGSELLFQLSKRLKVSMD 60 Query: 72 FFFDVSP-TVCSDISSEENNVMDFISTPD 99 +FF+ + + +I + F+ + Sbjct: 61 YFFEDTEVSSLENIDKFKELSKKFLDERE 89 >gi|317490559|ref|ZP_07949035.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] gi|316910339|gb|EFV31972.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] Length = 205 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G++++ R G++QE+L L ++ V K+E G LQ ++ + + + Sbjct: 1 MDFGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDD 60 Query: 73 FFDVSP 78 Sbjct: 61 LLSTDD 66 >gi|229028813|ref|ZP_04184915.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] gi|228732500|gb|EEL83380.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] Length = 149 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|226361968|ref|YP_002779746.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240453|dbj|BAH50801.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 221 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++R R G+S + +GI+ + K E S L ++ L+ P++ F Sbjct: 37 IARQVRALRKASGLSVGDMAAKVGISKAMLSKIENSQTSCSLSTLARLAAGLDVPVTSLF 96 Query: 75 DVSPTVCSDISSEEN 89 + T + E Sbjct: 97 RGADTARDAVYVEAG 111 >gi|170760210|ref|YP_001786158.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407199|gb|ACA55610.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 201 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|182419849|ref|ZP_02951089.1| putative phage repressor [Clostridium butyricum 5521] gi|237666894|ref|ZP_04526879.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376397|gb|EDT73979.1| putative phage repressor [Clostridium butyricum 5521] gi|237658093|gb|EEP55648.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 156 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R ++Q +L + + ++ ++ YE V L+ IS L IS Sbjct: 1 MTIGARIRTSRKKANLTQAELAKLIDVSPSSIRMYETNKRNVSLEILKKISTALNISISD 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|159044420|ref|YP_001533214.1| putative HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912180|gb|ABV93613.1| putative HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 215 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G + +L G++ + K E G + LQ ++ L P++ FF Sbjct: 26 IGRALRAFRREQGTTVVELSAATGLSTGMLSKIENGQTSPSLTTLQALANALSVPLTAFF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + + + + +G + N ++ Sbjct: 86 RGFEQSRAAVHTRAGEGAE--AEREGTRANHHYT 117 >gi|81429329|ref|YP_396330.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610972|emb|CAI56024.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 106 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R++ R ++Q +L + LG++ V YE+G++ L I +L++ + Sbjct: 5 FFGERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLSYPSLETLVSICSILDTSADYL 64 Query: 74 F---DVSPTVCSDISSEENN 90 D P ++ E+ Sbjct: 65 LNISDDLPFKMGGLTDEQTE 84 >gi|328956524|ref|YP_004373910.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328672848|gb|AEB28894.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 96 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R + M+ ++L E + ++ + E ++ L HI +VL IS Sbjct: 1 MEIGNRIQELRKLNNMTAKELSERINVSPPFISAIENNSTKLSLKTLAHICDVLGVTISE 60 Query: 73 FFDVSPTVCSD 83 FF+ + Sbjct: 61 FFNSEISPVEQ 71 >gi|307276073|ref|ZP_07557206.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306507403|gb|EFM76540.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|315575131|gb|EFU87322.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315582558|gb|EFU94749.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] Length = 73 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ +R LG +QE + +GI YE+G + ++++L+ P + FFD Sbjct: 8 LKKKRESLGYTQESFAKEIGIAKTTYSSYEQGYRNPTVQTAKKMAKILQVPWTIFFDEEV 67 Query: 79 TVCSDI 84 D Sbjct: 68 LETYDF 73 >gi|259415826|ref|ZP_05739746.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259347265|gb|EEW59042.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 443 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++LG+ Q L GI+ + E R+G L +++VL S Sbjct: 4 DSLTGSRIRERRLMLGLRQADLARDAGISASYLNLIEHNRRRIGGKLLVTLAQVLNVEPS 63 Query: 72 FFFDVSPTV 80 + Sbjct: 64 LLTEGVEAT 72 >gi|255021528|ref|ZP_05293572.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] gi|254969056|gb|EET26574.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] Length = 181 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 3/98 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++++ R +S LGE G++ + + E G + L+ I L I+ Sbjct: 3 QLGRQLQKLREERQLSLRSLGELAGVSASAISQMEAGKVSPSIATLEKICNALGVHIASL 62 Query: 74 FDVSPTVCSDI---SSEENNVMDFISTPDGLQLNRYFI 108 FD I ++E V S L R F Sbjct: 63 FDEPQGDQGPILLRTNERRRVYSADSHASIEPLARNFA 100 >gi|212711747|ref|ZP_03319875.1| hypothetical protein PROVALCAL_02822 [Providencia alcalifaciens DSM 30120] gi|212685849|gb|EEB45377.1| hypothetical protein PROVALCAL_02822 [Providencia alcalifaciens DSM 30120] Length = 107 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K+ + I R +S +LG +G++ QQ+ +YE G+ + S L + Sbjct: 7 EKMTESFSQAIADEIASLRRKRLLSGSQLGSLIGVSQQQISRYENGICEITLSTLCLLLH 66 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 L + FF E + + G Sbjct: 67 YLGVSLESFFFFVSERIEANEPELYGEFNLLFEQHG 102 >gi|126730936|ref|ZP_01746745.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126708652|gb|EBA07709.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 130 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+ R GMSQE L + LGI ++++E ++ A++L ++ +L + + Sbjct: 14 LGDRLAAAREAQGMSQETLAKNLGIKLTTLERWEDDLSEPRANKLSMVAGILNVSMVWLI 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + + DF + L R Sbjct: 74 TGEGEGVGNPEEDTTMGADF---TEILAEMRA 102 >gi|125719034|ref|YP_001036167.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498951|gb|ABN45617.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 168 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 5 NKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLLLE 64 Query: 75 -DVSPTVCSDISSEENN 90 P + +S +E N Sbjct: 65 DSDKPEIKPVLSEDEKN 81 >gi|29376650|ref|NP_815804.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344114|gb|AAO81874.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 70 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ +R LG +QE + +GI YE+G + ++++L+ P + FFD Sbjct: 5 LKKKRESLGYTQESFAKEIGIAKTTYSSYEQGYRNPTVQTAKKMAKILQVPWTIFFDEEV 64 Query: 79 TVCSDI 84 D Sbjct: 65 LETYDF 70 >gi|148253455|ref|YP_001238040.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405628|gb|ABQ34134.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 225 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R L ++ +LG GI+ + K E G + L +++ L PI+ F Sbjct: 42 IGAEVRRLRKDLDLTVSELGAAAGISAGMLSKIENGSISPSLATLSALAKALNVPIARLF 101 >gi|331647039|ref|ZP_08348133.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] gi|331043822|gb|EGI15958.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] Length = 108 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISF 72 ++G IR R +SQ++L + G++ Q+ + E G + + I+ L + I Sbjct: 3 HIGDNIRRMREAAKLSQQELADKSGVSKAQISRLENGTQKNPQIQTVIAIATELGTTIEE 62 Query: 73 F-FDVSPTVCSDISSEENNVMD 93 F PT + +S N+ D Sbjct: 63 LIFGEEPTATTYLSQALQNLPD 84 >gi|296875997|ref|ZP_06900055.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432988|gb|EFH18777.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 175 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ+++ + + I+ + + ++E G +++ + Q +++ + + Sbjct: 2 NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQQLADCFGVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S S +S + D P R + + D +L++ + E++Y T Sbjct: 62 SEYRDSQEASYQLYQKDP-DDPYNHVKARVYSILGD--------DLMKVL---EEQYITG 109 Query: 137 EEE 139 +E Sbjct: 110 HDE 112 >gi|256752787|ref|ZP_05493631.1| transcriptional regulator, XRE family [Thermoanaerobacter ethanolicus CCSD1] gi|256748321|gb|EEU61381.1| transcriptional regulator, XRE family [Thermoanaerobacter ethanolicus CCSD1] Length = 427 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 10/111 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I++G +I+ R+ +SQ +L + + K E G +L +I+E L+ P+ Sbjct: 1 MNISIGTKIKSLRLQKKLSQSELCGNF-MNRVVLSKIENGKALPSLEQLIYIAEKLKVPV 59 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPD----GLQLNR----YFIQIDD 112 +FF D+ T C + + ++++ + + ++L F +I+D Sbjct: 60 GYFFSDLKDTSCINNAENFSSIIKELFYSENYYDIVKLVEDNYNEFCKIED 110 >gi|149915490|ref|ZP_01904017.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] gi|149810779|gb|EDM70620.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] Length = 215 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 2 VGNKKIPNPVDI----NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 ++ + DI +G +R R G++ L + LG + + + E+ ++ S Sbjct: 20 TESRHRMHQTDISRAQTLGADLRALRKARGLTLADLADSLGRSVGWLSQVERDLSEPSIS 79 Query: 58 RLQHISEVLESPISFFFDVSPTVCSD 83 L+ I+E L P+S F + + + Sbjct: 80 DLRQIAEQLGVPMSLLFGHASALADE 105 >gi|260906368|ref|ZP_05914690.1| hypothetical protein BlinB_13653 [Brevibacterium linens BL2] Length = 180 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 30/86 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R GM+ L G++ + + E+G L I++ + P+ FF Sbjct: 2 GALIRSLRESAGMTLTDLSRMAGVSQGLLSQIERGRGNPAYLTLLKIAKAFDVPVGRFFG 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 + + T GL Sbjct: 62 SGGEPADNRVVRADKRRQLQVTDRGL 87 >gi|251779491|ref|ZP_04822411.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083806|gb|EES49696.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 164 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+GK I+ R + G++Q++ G + + ++KYE G + S I+ I Sbjct: 9 INIGKNIKHYRKLEGLTQKEFGAKIHKSEISIRKYESGKGNIPMSTFFDIARSFNINI-- 66 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 D+ I E ++ + + Sbjct: 67 -VDLLRNEEGRILGIEKDIYEDLR 89 >gi|229084128|ref|ZP_04216417.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] gi|228699164|gb|EEL51860.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] Length = 149 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELKQKVIQDSKQLA 80 >gi|85704021|ref|ZP_01035124.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85671341|gb|EAQ26199.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 190 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +R R G++ L E LG + + + E+ ++ S L+ ++EVL P+S Sbjct: 10 RSLGADLRALRKARGLTLAALAEMLGRSVGWLSQVERDLSEPSISDLRQVAEVLGVPMSL 69 Query: 73 FFDVSPTVCSD 83 F + + Sbjct: 70 LFGHASAPAEE 80 >gi|238912424|ref|ZP_04656261.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 90 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI +V +YE GV+R + + VL+ P +F Sbjct: 9 RLKTARLHAHLTQEKLGVLAGIEEETARSRVSQYESGVHRPTFEMMCAFARVLDVPECYF 68 Query: 74 F 74 + Sbjct: 69 Y 69 >gi|229160813|ref|ZP_04288804.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] gi|228622661|gb|EEK79496.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] Length = 145 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +GIT Q V K+E + L +SE+ + Sbjct: 1 MSLGQQLKRLRESQGFSQEDVAKKVGITRQAVYKWENDKSCPDIENLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD-------GLQLNRYF 107 + + I +E+ DF + GL + F Sbjct: 61 LIKGNQNLKEKIHIDEDT--DFEKENEFGFYIGFGLLIVSAF 100 >gi|169830890|ref|YP_001716872.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169637734|gb|ACA59240.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 245 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI R GMSQ+KL E + + K E G L I E + ++ Sbjct: 1 MDIGPRIARFRERAGMSQKKLAELAALDRSHISKIESGDTSPSLEALMRICESMGVTLAE 60 Query: 73 FFDVS 77 FF Sbjct: 61 FFGSD 65 >gi|153938231|ref|YP_001390160.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934127|gb|ABS39625.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318252|gb|ADF98629.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 201 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|239636398|ref|ZP_04677400.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] gi|239597753|gb|EEQ80248.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] Length = 179 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MEIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + EE + D Sbjct: 61 FFKETEQQKVIYKKEEQVIYD 81 >gi|229146819|ref|ZP_04275184.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296504729|ref|YP_003666429.1| transcriptional activator PlcR [Bacillus thuringiensis BMB171] gi|228636647|gb|EEK93112.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296325781|gb|ADH08709.1| transcriptional activator plcR [Bacillus thuringiensis BMB171] Length = 289 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R I G+SQ +LG+ +G + + E G+ L I+ LE P+ + + Sbjct: 7 GKAIRRIRKIRGLSQSELGDGIG-GQSFISRIEHGLVLPSIDTLLIIANRLEVPLEYLLE 65 >gi|227520115|ref|ZP_03950164.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227554980|ref|ZP_03985027.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229546714|ref|ZP_04435439.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|255971323|ref|ZP_05421909.1| predicted protein [Enterococcus faecalis T1] gi|255973942|ref|ZP_05424528.1| predicted protein [Enterococcus faecalis T2] gi|256617741|ref|ZP_05474587.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256761627|ref|ZP_05502207.1| predicted protein [Enterococcus faecalis T3] gi|256957270|ref|ZP_05561441.1| predicted protein [Enterococcus faecalis DS5] gi|256959996|ref|ZP_05564167.1| predicted protein [Enterococcus faecalis Merz96] gi|256964308|ref|ZP_05568479.1| predicted protein [Enterococcus faecalis HIP11704] gi|257077756|ref|ZP_05572117.1| predicted protein [Enterococcus faecalis JH1] gi|257081116|ref|ZP_05575477.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|257083785|ref|ZP_05578146.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257086210|ref|ZP_05580571.1| predicted protein [Enterococcus faecalis D6] gi|257089282|ref|ZP_05583643.1| predicted protein [Enterococcus faecalis CH188] gi|257415435|ref|ZP_05592429.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257418466|ref|ZP_05595460.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|293383748|ref|ZP_06629655.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293388776|ref|ZP_06633269.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|307267947|ref|ZP_07549335.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307271869|ref|ZP_07553137.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307277295|ref|ZP_07558398.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307278434|ref|ZP_07559509.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307286678|ref|ZP_07566764.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|307292450|ref|ZP_07572305.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312901588|ref|ZP_07760861.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312904430|ref|ZP_07763589.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312907036|ref|ZP_07766032.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312952861|ref|ZP_07771723.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978706|ref|ZP_07790433.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|227072459|gb|EEI10422.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227175889|gb|EEI56861.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229308174|gb|EEN74161.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|255962341|gb|EET94817.1| predicted protein [Enterococcus faecalis T1] gi|255966814|gb|EET97436.1| predicted protein [Enterococcus faecalis T2] gi|256597268|gb|EEU16444.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256682878|gb|EEU22573.1| predicted protein [Enterococcus faecalis T3] gi|256947766|gb|EEU64398.1| predicted protein [Enterococcus faecalis DS5] gi|256950492|gb|EEU67124.1| predicted protein [Enterococcus faecalis Merz96] gi|256954804|gb|EEU71436.1| predicted protein [Enterococcus faecalis HIP11704] gi|256985786|gb|EEU73088.1| predicted protein [Enterococcus faecalis JH1] gi|256989146|gb|EEU76448.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256991815|gb|EEU79117.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256994240|gb|EEU81542.1| predicted protein [Enterococcus faecalis D6] gi|256998094|gb|EEU84614.1| predicted protein [Enterococcus faecalis CH188] gi|257157263|gb|EEU87223.1| predicted protein [Enterococcus faecalis ARO1/DG] gi|257160294|gb|EEU90254.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|291078824|gb|EFE16188.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291081933|gb|EFE18896.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|306496495|gb|EFM66057.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306502156|gb|EFM71440.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306504940|gb|EFM74135.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306506029|gb|EFM75196.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306511375|gb|EFM80377.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306515588|gb|EFM84115.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310627021|gb|EFQ10304.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310629377|gb|EFQ12660.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310632128|gb|EFQ15411.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288413|gb|EFQ66969.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311291383|gb|EFQ69939.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315027056|gb|EFT38988.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315029041|gb|EFT40973.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315032500|gb|EFT44432.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315034266|gb|EFT46198.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315145162|gb|EFT89178.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315148028|gb|EFT92044.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315149631|gb|EFT93647.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315152943|gb|EFT96959.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315155174|gb|EFT99190.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315157502|gb|EFU01519.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315163070|gb|EFU07087.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315165270|gb|EFU09287.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315167995|gb|EFU12012.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315171773|gb|EFU15790.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|315174886|gb|EFU18903.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315574217|gb|EFU86408.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315577347|gb|EFU89538.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315581640|gb|EFU93831.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|327534452|gb|AEA93286.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] gi|329577861|gb|EGG59282.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 101 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I + R + M+Q+ L +G++ Q + + E+ I+ V I F Sbjct: 32 IHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVFGVTIDDVFTFKE 91 Query: 79 TVCSDISSEE 88 T+ D+ E Sbjct: 92 TLNDDVEQEA 101 >gi|310825925|ref|YP_003958282.1| DNA binding protein [Eubacterium limosum KIST612] gi|308737659|gb|ADO35319.1| DNA binding protein [Eubacterium limosum KIST612] Length = 113 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 31/69 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++Q +L + +G++ + + EKG I+ + + I + + Sbjct: 43 NRIKELRKEKGLTQLQLADAVGVSTRTIISLEKGQYNPSIMLAYKIARLFGTTIEALYCL 102 Query: 77 SPTVCSDIS 85 + +++ Sbjct: 103 EENLKNEME 111 >gi|291520457|emb|CBK75678.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 111 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 10 PVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VD +G RI+L R ++QEKL E L I+ V K E+G+ L I+++++ Sbjct: 2 SVDYKLIGSRIKLYRKSKKLTQEKLAELLAISVGYVSKMERGIEHPNLEMLSSIAQIVDC 61 Query: 69 PIS 71 I+ Sbjct: 62 DIA 64 >gi|237717599|ref|ZP_04548080.1| helix-turn-helix domain-containing protein [Bacteroides sp. 2_2_4] gi|229453103|gb|EEO58894.1| helix-turn-helix domain-containing protein [Bacteroides sp. 2_2_4] Length = 358 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KR++ R++ G S + L E +G I+ Q V KYE G +S L I+ L +FF Sbjct: 9 KRLKSARIMAGWSMDMLCEKIGNLISKQSVSKYENGKMMPDSSVLIAIANALNLDPDYFF 68 >gi|170729039|ref|YP_001763065.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814386|gb|ACA88970.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 327 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R LG SQE+L E + I+ Q V K+E + +++ ++++ E F Sbjct: 1 MILAEKIIRLRKQLGWSQEELAEKMAISRQSVSKWESANSIPDLNKIIKLADIFEVSTDF 60 Query: 73 FFDVSPTVCS 82 S Sbjct: 61 LLKDEYEANS 70 >gi|332527737|ref|ZP_08403778.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332112135|gb|EGJ12111.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 189 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VG+ +R R G+SQ L E G++ + + E+G + SRL ++E L Sbjct: 16 AFVGQNLRAARQNAGLSQAALAEASGLSRRMIVALEQGDTNISLSRLDRLAEALGV 71 >gi|291531329|emb|CBK96914.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 168 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R G++QE+L E ++ + V ++E G N L +++ E I Sbjct: 6 IGEFLKYLRKNKGLTQEQLAEHFCVSSRTVSRWENGNNMPDIDILIELADFYEVDIRELI 65 Query: 75 DVSPTVCS 82 D + Sbjct: 66 DGERKSEN 73 >gi|260427234|ref|ZP_05781213.1| DNA-binding protein [Citreicella sp. SE45] gi|260421726|gb|EEX14977.1| DNA-binding protein [Citreicella sp. SE45] Length = 212 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R M+ +L + G++ + K E GV + LQ ++ L P+ Sbjct: 24 LEVAIGRQVRELRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANALRVPL 83 Query: 71 SFFFDVSPTVCS 82 F Sbjct: 84 VQLFSGFEEPRG 95 >gi|255526451|ref|ZP_05393362.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296184825|ref|ZP_06853236.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255509833|gb|EET86162.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296050607|gb|EFG90030.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 240 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N + +GK+IR R ++ ++L + + + V KYEKG V L I+ L Sbjct: 1 MINELTCEIGKKIRNCRKSKNITMQQLADIIHKSKASVSKYEKGDIVVDIVTLYDIAAAL 60 Query: 67 ESPI 70 I Sbjct: 61 NIHI 64 >gi|241763075|ref|ZP_04761136.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241367858|gb|EER62090.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 121 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 12/118 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI +R G++Q +L E LG++ Q VQ YE G R+ + L ++ L + Sbjct: 12 VTLGERIAAQRQACGITQVQLAEVLGVSQQTVQAYEVGRRRIQVAALPTVARTLSLSLEE 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK-IIELVRSIVSS 129 F + + + + L K RQ+ +I+++ ++++ Sbjct: 72 LFGEDTQARRSKRGPASKLENQLERISTL-----------PKPRQRMVIDVIEAMLAQ 118 >gi|226948868|ref|YP_002803959.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843124|gb|ACO85790.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 370 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R G++QE+L +G++ V K+E + + L I+ I Sbjct: 6 IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETSYPDITLLPVIAIFFNVTIDTLL 65 Query: 75 DVSPTVCSD 83 + + + Sbjct: 66 NFKIELSDE 74 >gi|170754897|ref|YP_001780428.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169120109|gb|ACA43945.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 201 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|310640682|ref|YP_003945440.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245632|gb|ADO55199.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 122 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G+ QE+L + LGIT + YEK + L ++++ E I + Sbjct: 4 GTRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFETLTKLADIFEVTIDYLVG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID----DVKVRQKIIELVR 124 + + + S+ +D + D L R+ + ID + ++ I VR Sbjct: 64 RTSHPTAILDSDVREFVDQLELSDENILQRFNLTIDGRTLSEEEAKRFIAFVR 116 >gi|239814885|ref|YP_002943795.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801462|gb|ACS18529.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 182 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +I+ RM G+S +L G++ + + E+G+ L I+ L P+S FF Sbjct: 2 GLQIKALRMAAGISGNELAHRCGVSGSLLSRVERGLVSPSVETLNRIAVGLNVPLSRFF 60 >gi|168180189|ref|ZP_02614853.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182668963|gb|EDT80939.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 370 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R G++QE+L +G++ V K+E + + L I+ I Sbjct: 6 IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETSYPDITLLPVIAIFFNVTIDTLL 65 Query: 75 DVSPTVCSD 83 + + + Sbjct: 66 NFKIELSDE 74 >gi|53715744|ref|YP_101736.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60683678|ref|YP_213822.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|253566443|ref|ZP_04843896.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|255011438|ref|ZP_05283564.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] gi|265767314|ref|ZP_06094980.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|313149255|ref|ZP_07811448.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|52218609|dbj|BAD51202.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60495112|emb|CAH09931.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|251944615|gb|EES85090.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|263252619|gb|EEZ24131.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|301165190|emb|CBW24760.1| putative transcriptional regulator [Bacteroides fragilis 638R] gi|313138022|gb|EFR55382.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 191 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R G+S E+L E G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKSLRENKGISIEELAERSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCSDIS 85 D +S Sbjct: 67 DDQDETGPVVS 77 >gi|320449325|ref|YP_004201421.1| methyltransferase [Thermus scotoductus SA-01] gi|320149494|gb|ADW20872.1| methyltransferase [Thermus scotoductus SA-01] Length = 570 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N + VG+ +R R G++ L GI + E G + L ++ L Sbjct: 1 MKNELSYEVGQNLRRLRQARGLTLSGLAAKAGIAKSLLHALEAGRANPTLATLWALARAL 60 Query: 67 ESPISFFFDVSPTVCSDI 84 E P P + Sbjct: 61 EVPFGELVQARPVGDEGV 78 >gi|310828218|ref|YP_003960575.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] gi|308739952|gb|ADO37612.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] Length = 197 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 R R +SQ L E LG++ V ++E N + ++ ++++ + V + Sbjct: 5 RQLRKERNLSQANLAERLGVSQTAVSQWETDKNYPDINTIKQLADIYSVTTDYLLGVDSS 64 Query: 80 VCSDISSEENNVMDFISTPDGLQ 102 ++N ++ + P G++ Sbjct: 65 RLK----KDNEIVVYTRVPAGVE 83 >gi|282851951|ref|ZP_06261311.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556960|gb|EFB62562.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 153 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R G+SQ + +GIT Q V YE+G Q ++++ E + + Sbjct: 2 NRIKQLREEKGVSQSDVANAVGITRQAVSLYEQGKRAPKLEIWQKLADLFEVSVPYL 58 >gi|218289581|ref|ZP_03493801.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|258511692|ref|YP_003185126.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240231|gb|EED07414.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|257478418|gb|ACV58737.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 145 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R+R R G SQ++L G++ + E+ R + +++ L P+ Sbjct: 6 GARVRAIRQSRGWSQQELAMRAGVSTPHISSIERDKRRPSLDYAKRLADALGVPL 60 >gi|167747135|ref|ZP_02419262.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] gi|167654095|gb|EDR98224.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] Length = 239 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 K + R G SQE+LG L ++ Q V K+E G ++L +S + + I Sbjct: 5 KNLNRFRKEKGWSQEELGNRLNVSRQTVSKWELGTTTPEMNKLMELSRIFQVSID 59 >gi|325845858|ref|ZP_08169056.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481764|gb|EGC84796.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 185 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R+ +S +KL E + ++ + + E G + L+ IS+ L+ P+ F Sbjct: 4 LGKNIKNFRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQHLKVPMFTLF 63 >gi|239626609|ref|ZP_04669640.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516755|gb|EEQ56621.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 86 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R G++QE+LG+ +G + Q + E IS+V I F F Sbjct: 3 NRIKELREERGLTQEQLGQMVGTSRQAINAIETEKFEPSIWLAYDISQVFNCSIEEVFLF 62 Query: 75 DVSPTVCSDISSEENNVMD 93 + S SS +N D Sbjct: 63 EDSTRKTRADSSRRDNNGD 81 >gi|146297100|ref|YP_001180871.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410676|gb|ABP67680.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +S+ L E LG++ Q + YE G L I++ + + Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFGVTVDYL 62 >gi|163846261|ref|YP_001634305.1| helix-turn-helix domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524016|ref|YP_002568486.1| helix-turn-helix domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667550|gb|ABY33916.1| helix-turn-helix domain protein [Chloroflexus aurantiacus J-10-fl] gi|222447895|gb|ACM52161.1| helix-turn-helix domain protein [Chloroflexus sp. Y-400-fl] Length = 422 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R+R R+ GM+ L + +T Q + KYE G + + LQ +++ L + Sbjct: 2 ISQRLRQLRLARGMTLSDLAQATNHIVTRQAISKYEHGHAQPSPTVLQRLAQALGVRPTD 61 Query: 73 FFDVS 77 D + Sbjct: 62 LLDGA 66 >gi|296133185|ref|YP_003640432.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296031763|gb|ADG82531.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 184 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + RIR R I G+S E L + GI+ + Q+YE G + S L ++ Sbjct: 6 KQIAARIRELREISGISLETLAQEFGISKETYQEYESGEVDIPVSFLYEVANKFNV 61 >gi|239835028|ref|ZP_04683356.1| Protein schB [Ochrobactrum intermedium LMG 3301] gi|239823091|gb|EEQ94660.1| Protein schB [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 3/101 (2%) Query: 2 VGNKKIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + P P D ++G RIR RR LG++ L E G++ + + E+G+ L Sbjct: 12 IAPISEPTPNDAGDIGARIRTRRQALGLTLGYLSEVSGLSTGALSQIERGLVSPTVRTLY 71 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 I++VL + D P + + V+ P+ L Sbjct: 72 TIADVLSMSPAQLID--PQGFAAAARANPYVLRASEQPEVL 110 >gi|228945433|ref|ZP_04107787.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814236|gb|EEM60503.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 181 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-I 70 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 71 SFFFDVSPT 79 SF + + T Sbjct: 63 SFLLEDTNT 71 >gi|153011851|ref|YP_001373064.1| helix-turn-helix domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151563739|gb|ABS17235.1| helix-turn-helix domain protein [Ochrobactrum anthropi ATCC 49188] Length = 181 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-P 69 +D + K +R R G+ Q +G++ +YE+ +++ +R+ HI EVL P Sbjct: 60 IDQRLAKYLRDARDSAGLKQADFAPLMGLSTPVYGRYERAFSKLHVTRMVHICEVLNIMP 119 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I ++ +P + E D ++L + + R ++ LV+ + Sbjct: 120 IEMLYEAAPHLWGKSEEEA---------KDRVELAKLVADLPHSTTRD-LLSLVKKMADL 169 Query: 130 EKK 132 + + Sbjct: 170 QSQ 172 >gi|325831430|ref|ZP_08164684.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325486684|gb|EGC89132.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 205 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G++++ R G++QE+L L ++ V K+E G LQ ++ + + + Sbjct: 1 MDFGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDD 60 Query: 73 FFDVSP 78 Sbjct: 61 LLSADD 66 >gi|283769042|ref|ZP_06341948.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104399|gb|EFC05776.1| DNA-binding protein [Bulleidia extructa W1219] Length = 136 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 11/93 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ G++Q+++GE L ++ Q V YE G R + + + P+++F Sbjct: 13 RQMKQVRIENGLTQKEMGEILNVSAQSVSAYENGTVRPDIEVIFRYMDYFQIPMAYFLKE 72 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + D + ++L F + Sbjct: 73 LNSELKDKPTALE-----------MELISAFRK 94 >gi|85709529|ref|ZP_01040594.1| hypothetical protein NAP1_11628 [Erythrobacter sp. NAP1] gi|85688239|gb|EAQ28243.1| hypothetical protein NAP1_11628 [Erythrobacter sp. NAP1] Length = 238 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR+ R G++ ++ + LG++ V +EK R R+ I++VL Sbjct: 143 LGKRLNTLRRERGLTLAQVADALGVSKPTVWAWEKDKARPLPERIGAIADVLGVTSEDLM 202 Query: 75 DVSPTVCSDISSEE 88 +V+ + EE Sbjct: 203 EVAGRTPAGALIEE 216 >gi|282853817|ref|ZP_06263154.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] gi|282583270|gb|EFB88650.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] Length = 508 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRITEALESPI 64 >gi|269797322|ref|YP_003311222.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269093951|gb|ACZ23942.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 290 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++R R G+SQ KL E L ++ Q + K+E G S L+ +S V + Sbjct: 5 EKLREYRKQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVD 59 >gi|210634331|ref|ZP_03298067.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279] gi|210158858|gb|EEA89829.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279] Length = 206 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +I+ RR +G+SQE+L E L ++ Q + +E+ L +S + ++ I Sbjct: 1 MDISNQIKTRREAMGISQEQLAEKLYVSRQTISNWERNKTYPDVQSLLMLSILFDTSIDT 60 Query: 73 FFDVSPTVCSDISSEEN 89 T+ + + Sbjct: 61 LVKGDVTIMEEAVERDR 77 >gi|168184026|ref|ZP_02618690.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Bf] gi|237794098|ref|YP_002861650.1| Cro/CI family transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|182672867|gb|EDT84828.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Bf] gi|229260454|gb|ACQ51487.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Ba4 str. 657] Length = 201 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|31747743|gb|AAO38363.1| Lfe164p1 [Leptospirillum ferrooxidans] Length = 85 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+R+ R G+S +LG +G+T ++KYE ++ L +S L + Sbjct: 5 IMIGQRLYRARKAAGLSLRELGSRIGLTHAAIKKYEDEQVTPTSATLLKLSRALNVRTEY 64 Query: 73 FF 74 FF Sbjct: 65 FF 66 >gi|332360161|gb|EGJ37975.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 169 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + + Sbjct: 7 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLEE 66 Query: 76 VSPTVCSDISSEEN 89 + + SE+ Sbjct: 67 SDKPEINPVLSEDE 80 >gi|327467942|gb|EGF13432.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 167 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 15/112 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + SE+ + NRY+ ++ Q I V ++ Sbjct: 66 SDKPEIKPVLSED-------------EKNRYYKEVKSYGFWQVIYIFVSALA 104 >gi|326803119|ref|YP_004320937.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650926|gb|AEA01109.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 115 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+ R MSQ +L E + ++ V ++E G + +L ++ I + Sbjct: 5 GIRLAQLRNEKKMSQRELAEKMDVSQSYVGQWESGKRVIPTEKLLDLANFFNVSIDYL 62 >gi|317121314|ref|YP_004101317.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591294|gb|ADU50590.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter marianensis DSM 12885] Length = 464 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF---D 75 +R R+ LG+SQ++L G+T Q V E G ++ L + F D Sbjct: 32 LRAARLRLGLSQQELAARAGVTRQAVSAIEGGQAAPSLGVALRLARALGCRVEDLFWLDD 91 Query: 76 VSPTVCSDISSEENNVMDFISTP 98 P V ++ + P Sbjct: 92 PEPEVEVELVGTGAEDPEPQGAP 114 >gi|111019821|ref|YP_702793.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819351|gb|ABG94635.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 221 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++R R G+S + +GI+ + K E S L ++ L+ P++ F Sbjct: 37 IARQVRSLRKASGLSVGDMAAKVGISKAMLSKIENSQTSCSLSTLARLAAGLDVPVTSLF 96 Query: 75 DVSPTVCSDISSEEN 89 + T + E Sbjct: 97 RGADTARDAVYVEAG 111 >gi|222053821|ref|YP_002536183.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563110|gb|ACM19082.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 37/74 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R + ++QEKL E +G+ + V E G + L++IS+ L+ I F Sbjct: 8 LGARIKELRKLRKVTQEKLAEKIGVDPKYVSFIEVGRSSPSLEALENISQALDVEIKDLF 67 Query: 75 DVSPTVCSDISSEE 88 + S S ++ Sbjct: 68 EFSHHEARPASIDQ 81 >gi|71910858|ref|YP_282408.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|71853640|gb|AAZ51663.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] Length = 66 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 I+ R MSQE+L G++ + E + V S LQ ++ L+ PI +FF Sbjct: 6 IQRLREEKKMSQEELANKSGVSRTTISLIETDKSTTVKLSTLQKLAVALDVPIGYFF 62 >gi|326772583|ref|ZP_08231867.1| DNA-binding protein [Actinomyces viscosus C505] gi|326637215|gb|EGE38117.1| DNA-binding protein [Actinomyces viscosus C505] Length = 103 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG------ASRLQHIS 63 P+ +G R++ R+ G+SQE L GI+ QK+EKG +R G L ++ Sbjct: 28 PIARQLGLRLQRARIAKGLSQEALAHAAGISSYTYQKFEKGESRPGTPMNPRLRTLIALA 87 Query: 64 EVLESPI 70 L+ + Sbjct: 88 TALDMQV 94 >gi|322804615|emb|CBZ02167.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 181 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IR R ++ + L E G++ + + E + + + L+ I + L PI++FF Sbjct: 5 IAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIGDALNVPITYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + +E V + + Sbjct: 65 KSPELHKFLVKKQEREVFELEGSS 88 >gi|295100273|emb|CBK97818.1| Predicted transcriptional regulator with C-terminal CBS domains [Faecalibacterium prausnitzii L2-6] Length = 184 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+R+++RR LGMSQE+L +G + + K E G + S+++ I++ LE+ S Sbjct: 1 MTIGQRVKIRREELGMSQEELATKVGYKSKSSINKIELGFRVLTQSKIKVIADALETTPS 60 Query: 72 FFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + D S ++VM ++ D L I + +++ Sbjct: 61 YIMGWDEESHQNEWSSKFRDSVMQILNNADPADLKAAGISVQEIE 105 >gi|148988514|ref|ZP_01819961.1| serine hydroxymethyltransferase [Streptococcus pneumoniae SP6-BS73] gi|147926195|gb|EDK77269.1| serine hydroxymethyltransferase [Streptococcus pneumoniae SP6-BS73] Length = 96 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L MSQ +L E GI Q Q+ + E G GA L +S+ L+ + +FF+ Sbjct: 8 RLKNRRKELKMSQRELTE--GICKQGQISRLENGEFTPGADFLYALSKKLKVSVDYFFN- 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 I E + + +F NR + + Sbjct: 65 -----EQIVEEIDELSEFKKLAQTFITNRNYESLK 94 >gi|126459405|ref|YP_001055683.1| XRE family transcriptional regulator [Pyrobaculum calidifontis JCM 11548] gi|126249126|gb|ABO08217.1| transcriptional regulator, XRE family [Pyrobaculum calidifontis JCM 11548] Length = 528 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +VG+RI R G+S +L E G++ + + E G + L I+ LE Sbjct: 7 RSVGERIAALRRERGLSLSELAERAGVSKSTLYEIEMGRVAPSVTTLWKIANALEV 62 >gi|329116763|ref|ZP_08245480.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907168|gb|EGE54082.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 225 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 35/72 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ +R LG Q++L E +G++ Q K+EKG+++ + + + L + + Sbjct: 6 KLKQKREELGFEQQELAERIGVSKQAYFKWEKGLSKPTKVNIAKLEKALNVTEGYLSEDE 65 Query: 78 PTVCSDISSEEN 89 + +E N Sbjct: 66 ISSLYKQLTEPN 77 >gi|313205461|ref|YP_004044118.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444777|gb|ADQ81133.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 266 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI R G+SQE+L + +G + + + E G +G +Q ++ VL + Sbjct: 8 KQIGQRITELRKTKGLSQEELAKSIGFSRPSLAQVELGNRNIGILEMQKLATVLGFSLDD 67 Query: 73 FFDVSPTVCSDISSE---ENNVMDFISTPDGLQL 103 + ++ E + + IS P LQL Sbjct: 68 IMSENFNSKHELKHETAMPKEISERISVP-TLQL 100 >gi|284032671|ref|YP_003382602.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811964|gb|ADB33803.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 191 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 8/104 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + +L E GI+ + + E G R L ++ + + Sbjct: 11 VGPRLRRLRQERGTTLTQLAESTGISVSTLSRLEAGQRRPTLELLLPLARAHQVQLDELV 70 Query: 75 DVSPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQIDDV 113 D T I S+ ++ P GLQ F QI Sbjct: 71 DAPSTGDPRIHSKPIKRFGAVLIPLSRRPGGLQ---AFKQIAPP 111 >gi|163787647|ref|ZP_02182094.1| hypothetical protein FBALC1_03872 [Flavobacteriales bacterium ALC-1] gi|159877535|gb|EDP71592.1| hypothetical protein FBALC1_03872 [Flavobacteriales bacterium ALC-1] Length = 363 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D GK + R G++Q ++ E +T + +Q+ E G + +S ++ ISE L Sbjct: 2 NKLD--FGKELIKIRKARGLTQAEVAEKCNVTTRTIQRIESGAVKPRSSTIKIISEFLGV 59 Query: 69 PISFFFDVSP 78 FF+ S Sbjct: 60 N---FFETSD 66 >gi|307330591|ref|ZP_07609731.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306883747|gb|EFN14793.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 402 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +P D ++G RIR R I S +LG ++ Q+ + E G AS L ++ Sbjct: 4 NMPETSDQHIGARIRELRAIRDFSLAELGRRAHVSTSQLSRVENGEQPASASVLSAVARA 63 Query: 66 LESPIS 71 L IS Sbjct: 64 LAVDIS 69 >gi|226948085|ref|YP_002803176.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843648|gb|ACO86314.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 201 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|221213964|ref|ZP_03586937.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein) [Burkholderia multivorans CGD1] gi|221166141|gb|EED98614.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein) [Burkholderia multivorans CGD1] Length = 257 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R+ +SQE L +G++ + + E G N+ G+ L ++ L + Sbjct: 21 LGSRVKAARLDAKLSQEALARQVGVSQGLIGQIESGKNQ-GSKHLAALARALGVSADWL 78 >gi|187776986|ref|ZP_02993459.1| hypothetical protein CLOSPO_00531 [Clostridium sporogenes ATCC 15579] gi|187773914|gb|EDU37716.1| hypothetical protein CLOSPO_00531 [Clostridium sporogenes ATCC 15579] Length = 434 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I N+ + Sbjct: 65 ESEDTQAEKICKYYENIAE 83 >gi|169346977|ref|ZP_02865925.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297036|gb|EDS79160.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 180 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATALKLDLKS 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|56962989|ref|YP_174716.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909228|dbj|BAD63755.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 135 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R G SQE+L + L ++ Q V K+E + +SE+ + + Sbjct: 5 GSKLKQLREEQGFSQEQLAKELNVSRQAVWKWETDKGLPDIQNIVRLSELFDVSTDYLLK 64 Query: 76 VSPTVCSDISS 86 S + S Sbjct: 65 ESELIAEPTPS 75 >gi|317473654|ref|ZP_07932943.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] gi|316898944|gb|EFV20969.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] Length = 239 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R G SQE+LG L ++ Q V K+E G ++L +S + + I Sbjct: 5 ENLNRLRKEKGWSQEELGNRLNVSRQTVSKWELGSTTPELNKLMELSRIFQVSID 59 >gi|315221870|ref|ZP_07863782.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315189103|gb|EFU22806.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 207 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 9/111 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++QE+L +G+T + + +EKG ++ + Q +++ + + Sbjct: 5 NRIKELRQKEKLTQEELANKIGVTKRTIIAWEKGERQIKQDKAQQLADYFGVSVRYLLGY 64 Query: 77 SPTVCSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQKIIELVR 124 S + + M + G L L R +V+ K+IE +R Sbjct: 65 EDDYLSSMIKKYEESMKNPADFGGYGLLALTRG------TEVQDKVIEALR 109 >gi|326789972|ref|YP_004307793.1| hypothetical protein Clole_0862 [Clostridium lentocellum DSM 5427] gi|326540736|gb|ADZ82595.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 151 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF---- 74 ++ +R + +SQ LG +G++ +Q+ E G L+ I++ L ++ F Sbjct: 6 LKTKRKEMKLSQSALGSLVGVSGAYIQQLEAGTKNPSIETLKKIADALNIRVNELFVDTL 65 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ ++ ++D I D ++ Sbjct: 66 ENILRKEIDKPQKCDDELIDMIRNSDEIENV 96 >gi|282916348|ref|ZP_06324110.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] gi|282319788|gb|EFB50136.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] Length = 179 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENEKVLYKKEEQVIYD 81 >gi|168184062|ref|ZP_02618726.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|237794132|ref|YP_002861684.1| HTH domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182672824|gb|EDT84785.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|229261321|gb|ACQ52354.1| HTH domain protein [Clostridium botulinum Ba4 str. 657] Length = 381 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I +R G++QE+L +G++ V K+E G++ L ++ + Sbjct: 4 LNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISMDE 63 Query: 73 FFDVSPTVCSD 83 SP + + Sbjct: 64 LLGYSPQLTKE 74 >gi|163789807|ref|ZP_02184244.1| possible transcriptional regulator [Carnobacterium sp. AT7] gi|159875029|gb|EDP69096.1| possible transcriptional regulator [Carnobacterium sp. AT7] Length = 104 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L M+QE++ E + ++ Q + +E G N + L ISE+ + Sbjct: 6 RLKQRRNTLKMTQEEVAEKIHVSRQTISNWENGRNLPDINSLILISEIYAISLDKLMKGD 65 Query: 78 P 78 P Sbjct: 66 P 66 >gi|320528557|ref|ZP_08029714.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131143|gb|EFW23716.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 145 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R+ ++Q++L G+T ++ YE G +L+ I++ L IS D Sbjct: 4 GKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNKEQLRKIADALNCDISTLID 63 Query: 76 VSPTVCSDISS 86 P +I Sbjct: 64 HEPNSIFEIMH 74 >gi|315640505|ref|ZP_07895613.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] gi|315483709|gb|EFU74197.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] Length = 139 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++I+L R M+Q + E L ++ Q V +E+G + +S++ + + Sbjct: 1 MDIGEKIQLLRKEKQMTQNMVAEVLHVSTQAVSNWERGKGYPDIQNILQLSDLFDVSLD 59 >gi|313905283|ref|ZP_07838650.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469894|gb|EFR65229.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 184 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Query: 10 PVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D+N +G+RI+ R G++Q++L + +T + + E+G+ L H+ E+L Sbjct: 3 PIDLNKDIGRRIKDLRQRNGLTQQELADRAELTKGFISQLERGLGSPSVETLMHMIEILG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMD 93 S + FF + + D Sbjct: 63 SNPADFFKDEGEQVVFTEEDYSEKTD 88 >gi|310815924|ref|YP_003963888.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308754659|gb|ADO42588.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 183 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 12/101 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R RM G+SQ L + +G+ + E G L+ I + L ++ FF Sbjct: 6 IGGRLRALRMARGLSQRVLAKRVGVPNSTISLIESGRANPSVGSLKRILDGLPIGMAEFF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR---YFIQIDD 112 P + F + + ++ R F Q+ D Sbjct: 66 AFDPEAQRQV---------FFAAEELREIGRGKISFRQVGD 97 >gi|262282955|ref|ZP_06060722.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261207|gb|EEY79906.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 121 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +NVG+RI+ RR L MS + L E +G++ + +YEKG + +VG L+ I++ L + Sbjct: 1 MNVGERIKQRRKELKMSADALSERVGVSRSTIFRYEKGDIEKVGPEVLKKIADTLNISPA 60 >gi|256847858|ref|ZP_05553303.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715547|gb|EEU30523.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 189 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I+ R+ G+SQE+L E ++ + +Q+ E G + L ++ L + F Sbjct: 23 VNTQIKELRVAKGLSQEQLAEAAKVSVRTIQRLEAGQDG-SIETLNLVAGALGVSVRDLF 81 Query: 75 DVSPTVCSD 83 + + Sbjct: 82 EDPQAQANQ 90 >gi|227539099|ref|ZP_03969148.1| hypothetical protein HMPREF0765_3343 [Sphingobacterium spiritivorum ATCC 33300] gi|227241049|gb|EEI91064.1| hypothetical protein HMPREF0765_3343 [Sphingobacterium spiritivorum ATCC 33300] Length = 96 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR++R L +SQE + L ++ K E+G +V ++ I+ + + Sbjct: 1 MEIGEYIRIKRENLKVSQEAVAFKLDMSQAAYSKIERGETKVKVDQVYKIAHLFGISV-- 58 Query: 73 FFDVSPTVCSDISSEEN 89 +++ P + + EN Sbjct: 59 -YELLPPSLASDVTREN 74 >gi|146319399|ref|YP_001199111.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146321603|ref|YP_001201314.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253752422|ref|YP_003025563.1| DNA-binding protein [Streptococcus suis SC84] gi|253754248|ref|YP_003027389.1| DNA-binding protein [Streptococcus suis P1/7] gi|253756182|ref|YP_003029322.1| DNA-binding protein [Streptococcus suis BM407] gi|145690205|gb|ABP90711.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145692409|gb|ABP92914.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251816711|emb|CAZ52353.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251818646|emb|CAZ56481.1| putative DNA-binding protein [Streptococcus suis BM407] gi|251820494|emb|CAR47248.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|292559027|gb|ADE32028.1| Predicted transcriptional regulator [Streptococcus suis GZ1] gi|319758828|gb|ADV70770.1| transcriptional regulator [Streptococcus suis JS14] Length = 62 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R++LG+SQ L + +G++ Q + E ++++ L++ ++ F Sbjct: 2 NRVKDYRLLLGISQLDLAKAIGVSRQTINMIENNKYNPSLDLCINLAKALQTDLNSLF 59 >gi|126652117|ref|ZP_01724299.1| DNA-binding protein [Bacillus sp. B14905] gi|126591025|gb|EAZ85136.1| DNA-binding protein [Bacillus sp. B14905] Length = 181 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R + ++ +L GIT + + E+G+ L+ +++ L+ P Sbjct: 3 NIDIGKKVEKYRKMKDLTNRELAALAGITPSMLSQIERGLANPSIQTLKVLAKTLDVPTF 62 Query: 72 FFF 74 FF Sbjct: 63 TFF 65 >gi|150018568|ref|YP_001310822.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905033|gb|ABR35866.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 359 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I R ++QE+L +GI+ V K+E G + S L ++ L + I Sbjct: 4 LNIGETILKLRKERKLTQEELALMIGISAGAVSKWENGNSMPDISILAPLARALNTSIDT 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 + + + + + + +G Sbjct: 64 LLSFHKELSEEEVNNIKSKLTKLFLNEG 91 >gi|320528015|ref|ZP_08029181.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131641|gb|EFW24205.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 229 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D K ++ R +SQ +L + LG+ + + YE G L+ I++ + Sbjct: 1 MDRKFSKSLKSLREEHHLSQRQLADALGVAYSTIGMYESGQREPNYETLEIIADFFNVDM 60 Query: 71 SFF 73 ++ Sbjct: 61 NYL 63 >gi|317055585|ref|YP_004104052.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447854|gb|ADU21418.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 313 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G IR R ++QE+L E LGIT + V ++E S+L ++ + Sbjct: 2 MTIGSTIRQLRQEQDITQEQLAEALGITSRAVSQWECDRTTPDISQLPALANFFDV 57 >gi|293401719|ref|ZP_06645861.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304977|gb|EFE46224.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 139 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 11/112 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R+ GMSQ+ L + L +T Q + K+E+G++ A L +SE+ E +S + Sbjct: 4 ENLKTLRIEKGMSQQFLADQLHVTRQTISKWERGLSVPDADMLIALSEMFEVSVSTL--L 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSIV 127 + +V + +SE + + + + L L Q+ R +K+ +++R I Sbjct: 62 NRSVNEEDTSESTLLAEKL---EQLNL-----QLAQRNQRSRKVWKVIRFIA 105 >gi|167620618|ref|ZP_02389249.1| helix-turn-helix domain protein [Burkholderia thailandensis Bt4] Length = 114 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 53/106 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+ I +R+I G++Q+K+ E LGI + V + E+GV RL ++++ + + Sbjct: 3 VVVGRAIAKQRVISGLTQDKVAERLGIGLEAVSRMERGVVIPTVVRLFELADIFQCDAAD 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + SD +S ++ +S D L F ++ R++ Sbjct: 63 LLTEASSRSSDQASHLTRLLSRLSAADRTLLLEVFERLSTRLTRRQ 108 >gi|146300361|ref|YP_001194952.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154779|gb|ABQ05633.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 129 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G++I R + M QE L + LG + Q + E + +L+ I++ L + Sbjct: 9 HIGRKISRIRELRDMKQEALAQALGTSQQTISALENSE-EIDDEKLKQIAKALGVSV 64 >gi|283783001|ref|YP_003373755.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|298253582|ref|ZP_06977372.1| transcriptional regulator [Gardnerella vaginalis 5-1] gi|283441430|gb|ADB13896.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|297532349|gb|EFH71237.1| transcriptional regulator [Gardnerella vaginalis 5-1] Length = 328 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L + LG++ Q V K+E + R+ +S + Sbjct: 6 KILELRKQNGWSQEELADKLGVSRQAVSKWEGAQSIPDMERIIALSRLFGVSTDLLVKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 V + N ++ VR ++IEL + Sbjct: 66 IDVMGKNVNAGENACQ-----------------EEAGVRMRVIELEEASA 98 >gi|229150060|ref|ZP_04278283.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] gi|228633359|gb|EEK89965.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] Length = 149 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MNLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + I S+ + Sbjct: 61 LIKGNQDFKKKIHSDAED 78 >gi|160943854|ref|ZP_02091085.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii M21/2] gi|158445028|gb|EDP22031.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii M21/2] gi|295103055|emb|CBL00599.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii SL3/3] Length = 206 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R+RLRR LG+SQE+L +G + + K EKG+N + S+++ +++ LE+ + Sbjct: 7 RVRLRREQLGLSQEELARRMGYRSRSSITKLEKGINDLPQSKVEELAQALETTPA 61 >gi|331701987|ref|YP_004398946.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129330|gb|AEB73883.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 196 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G +IR R + G SQE+L + ++ Q + +E G + +S + + Sbjct: 1 MDIGNKIRDYREVRGFSQEELASKIYVSRQTISNWETGKQYPDIQNVLLLSVLFGVSVD 59 >gi|328958145|ref|YP_004375531.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] gi|328674469|gb|AEB30515.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] Length = 180 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R+ ++QE+L E ++ + + E+ ++ I EVL Sbjct: 1 MEIGNRIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKD 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|283833076|ref|ZP_06352817.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] gi|291070694|gb|EFE08803.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 191 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ +G RIRL R G S L E G++ + K E+G + A+ L +S Sbjct: 4 IEDSINQRIGARIRLERESRGWSLTDLAERAGVSRAMIHKIERGESSPTATLLGRLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|268609129|ref|ZP_06142856.1| hypothetical protein RflaF_06476 [Ruminococcus flavefaciens FD-1] Length = 163 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 10/115 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R G +QE LGE +G+T + V ++E G L +S++ + I+ Sbjct: 4 VMIGKFLKELRKEKGYTQETLGEKIGVTNKTVSRWETGTYIPPVECLVMLSDIYDVSIN- 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +S E N + + L+L+ ++ K R+K + +V ++ Sbjct: 63 ----EIVAGQRLSQSEFNDKAEENLSEALRLSE-----NEYKQREKKLTIVMAVS 108 >gi|54022912|ref|YP_117154.1| hypothetical protein nfa9450 [Nocardia farcinica IFM 10152] gi|54014420|dbj|BAD55790.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 394 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R G++Q +L +GI + K E G RV A L I+E L I +F Sbjct: 32 LGDRIAQARSRHGLTQAQLAAAIGIDRSALAKIEGGTRRVSALELAGIAEELGERIEWFV 91 Query: 75 DVSPTV 80 SP Sbjct: 92 LPSPPA 97 >gi|327393838|dbj|BAK11260.1| putative HTH-type transcriptional regulator YdcN [Pantoea ananatis AJ13355] Length = 181 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 YLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 +++ TP L Y D ++R ++ + + + + Sbjct: 67 VHSGAHSAGEVTGYRQQNAQMAVTP----LLPY-----DARLRFDLLAV--ELAAGAQSD 115 Query: 134 RTIEEECMVEQ 144 T E+ ++EQ Sbjct: 116 STAHEKGVIEQ 126 >gi|302387526|ref|YP_003823348.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198154|gb|ADL05725.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 195 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ M+Q++L + + ++ + V K+E+G+ S + +S +LE I Sbjct: 6 VGSIIRALRLEHSMTQKQLADKMNLSDKTVSKWERGMGLPDISLIPELSRILEIDIMHLL 65 Query: 75 DVSPTVCSDISSEENNVMDFI 95 T + N F+ Sbjct: 66 SGDMTPNNFTGGNMKNTKYFV 86 >gi|227874017|ref|ZP_03992229.1| DNA-binding protein [Oribacterium sinus F0268] gi|227840133|gb|EEJ50551.1| DNA-binding protein [Oribacterium sinus F0268] Length = 203 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +GK I R GM+Q +L E LGI+ + V K+E G + + + + L+ ++ Sbjct: 4 IKIGKFIASCRKEEGMTQAELAEKLGISDRAVSKWETGKSMPDSGIMLELCGFLKINVN 62 >gi|325686748|gb|EGD28774.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 168 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--- 74 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 65 Query: 75 DVSPTVCSDISSEENN 90 P + +S +E N Sbjct: 66 SDKPEIKPVLSEDEKN 81 >gi|324324351|gb|ADY19611.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 120 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ RM +G +Q++ + + I+ V E G + IS + + Sbjct: 5 IGKRIKEIRMSIGYTQQQFADSVDISKPMVSYIESGKKTPSRETVSKISNLANVSTDYIM 64 Query: 75 DVSPTVCSDISSEENNVMDF 94 +S ++ SS + +++ Sbjct: 65 GLSDNKTNEKSSASDVMLEL 84 >gi|271500016|ref|YP_003333041.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270343571|gb|ACZ76336.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 92 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R+R R +SQE+L GI+ + ++ YE G ++ + +++L+ P + Sbjct: 4 QRLRAARERAKISQEELAIAAGISEETGYSRMSHYENGRHKPKFELICTFAKILDVPEGY 63 Query: 73 FFDVSPTVCS 82 F+ + + Sbjct: 64 FYTLDDSFAE 73 >gi|163736142|ref|ZP_02143561.1| transcriptional regulator, putative [Phaeobacter gallaeciensis BS107] gi|161390012|gb|EDQ14362.1| transcriptional regulator, putative [Phaeobacter gallaeciensis BS107] Length = 437 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++LG+ Q L + I+ + E R+G L ++ +L S Sbjct: 4 DTLTGSRIRERRLMLGLRQADLARQVKISASYLNLIEHNRRRIGGKLLVDLARMLAVEPS 63 Query: 72 FFFDVSPTVCSDISSEEN 89 + + E Sbjct: 64 MLTEGAEVALLSTLREAA 81 >gi|330719168|ref|ZP_08313768.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 134 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 K + R G+SQE+L L +T Q + K+E G ++Q I+E +P+ Sbjct: 7 KNLLSLRKEAGISQEELASKLFVTRQTISKWELGEVTPDLGKIQLIAEYFNTPV 60 >gi|282849276|ref|ZP_06258661.1| DNA-binding protein [Veillonella parvula ATCC 17745] gi|282580980|gb|EFB86378.1| DNA-binding protein [Veillonella parvula ATCC 17745] Length = 290 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++R R G+SQ KL E L ++ Q + K+E G S L+ +S V + Sbjct: 5 EKLREYRTQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVD 59 >gi|253688262|ref|YP_003017452.1| putative phage repressor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754840|gb|ACT12916.1| putative phage repressor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 244 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G+SQ+ LG+ +G++ +QK E G +++ +S L + + Sbjct: 7 ERLKTARIAQGLSQKALGDLIGVSQAAIQKIEVGKAS-QTTKIVELSNALHVRPEWLANG 65 Query: 77 SPTVCSDISSEE 88 + SD + Sbjct: 66 EDPMRSDGVTRP 77 >gi|255971922|ref|ZP_05422508.1| predicted protein [Enterococcus faecalis T1] gi|256616820|ref|ZP_05473666.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256763304|ref|ZP_05503884.1| predicted protein [Enterococcus faecalis T3] gi|256957906|ref|ZP_05562077.1| predicted protein [Enterococcus faecalis DS5] gi|257079843|ref|ZP_05574204.1| predicted protein [Enterococcus faecalis JH1] gi|257087648|ref|ZP_05582009.1| predicted protein [Enterococcus faecalis D6] gi|294779495|ref|ZP_06744891.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300860620|ref|ZP_07106707.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|255962940|gb|EET95416.1| predicted protein [Enterococcus faecalis T1] gi|256596347|gb|EEU15523.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256684555|gb|EEU24250.1| predicted protein [Enterococcus faecalis T3] gi|256948402|gb|EEU65034.1| predicted protein [Enterococcus faecalis DS5] gi|256987873|gb|EEU75175.1| predicted protein [Enterococcus faecalis JH1] gi|256995678|gb|EEU82980.1| predicted protein [Enterococcus faecalis D6] gi|294453452|gb|EFG21858.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300849659|gb|EFK77409.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|323481602|gb|ADX81041.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 239 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++RR LG++Q ++ E L +T Q + +E + L +S + E + Sbjct: 1 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDR 60 Query: 73 FFDVSPTVCSDISSEENN 90 T+ +S + Sbjct: 61 LLKEDNTMVEKLSKDIRE 78 >gi|108801860|ref|YP_642057.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119871013|ref|YP_940965.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126437828|ref|YP_001073519.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108772279|gb|ABG11001.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119697102|gb|ABL94175.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126237628|gb|ABO01029.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 219 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 7/100 (7%) Query: 10 PVD-----INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 PVD +G+ +R R G++ ++ E +GI+ + K E S L +++ Sbjct: 26 PVDDTEFEAAIGRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSLSTLALLAK 85 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFIS--TPDGLQ 102 + P++ F + + + T +G Sbjct: 86 GFDVPVTTLFRGADVERPAAFVKAGTGARIVRNGTKEGHD 125 >gi|89074996|ref|ZP_01161441.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|90581632|ref|ZP_01237423.1| transcriptional regulator, putative [Vibrio angustum S14] gi|89049235|gb|EAR54799.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|90437215|gb|EAS62415.1| transcriptional regulator, putative [Vibrio angustum S14] Length = 106 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ++LG +GI ++ +YEKG + S L+ I++ L P+++F Sbjct: 10 RLKEIRKRAKISQKELGVRVGIDESSASARMNQYEKGKHTPDISTLKKIADELGVPLNYF 69 Query: 74 F 74 F Sbjct: 70 F 70 >gi|317120977|ref|YP_004100980.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315590957|gb|ADU50253.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 244 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 21/124 (16%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PV VG RIR R G+S ++L I+ + E+GV + ++++L Sbjct: 3 PDPV--AVGNRIRAARQAAGLSVKELARRAHISPSHLSDIERGVKHPSLAVAATLAQILG 60 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTP------DGLQLNRYFIQIDDVKVRQKIIE 121 + + D + ++ + P G+ L R+++++ Sbjct: 61 RSLDW-----VVAGRDPLPDPVDLRTLLRDPARPLWYQGVPLTEA--------AREQLVD 107 Query: 122 LVRS 125 L+ + Sbjct: 108 LLDA 111 >gi|294794988|ref|ZP_06760123.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] gi|294454350|gb|EFG22724.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] Length = 142 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR RR+ LG+SQE L +G + + K E G + ++++ +EVL + ++ D Sbjct: 26 RIRERRIQLGLSQEDLAIKMGYKSRSTINKIESGAVDIARNKIEKFAEVLNTTPAYLMDW 85 Query: 77 SPTVCS 82 + T Sbjct: 86 NDTPKE 91 >gi|251789113|ref|YP_003003834.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|271500015|ref|YP_003333040.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|247537734|gb|ACT06355.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] gi|270343570|gb|ACZ76335.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 85 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ ++QEKLG G+ + ++ YE G ++ + + VL+ P + Sbjct: 4 KRLKEARLHAKLTQEKLGVLAGLEEATAYSRLSHYENGTHKPTFELVCEFARVLDVPECY 63 Query: 73 FFDVSPTVCSDISS 86 F+ V D+ Sbjct: 64 FYIVDDQFAQDVLE 77 >gi|209543154|ref|YP_002275383.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530831|gb|ACI50768.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 83 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+SQE L E +G+ + E G V L H S+ L + D Sbjct: 8 GANVRRLRRAAGLSQEALAERMGVDRAYISWIETGRQNVTLLSLWHASQALGVRPAALLD 67 Query: 76 VSPTVCSDISSEEN 89 S V ++ + + Sbjct: 68 ESHAVATEAAPADG 81 >gi|57641274|ref|YP_183752.1| transcription regulator [Thermococcus kodakarensis KOD1] gi|57159598|dbj|BAD85528.1| predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus kodakarensis KOD1] Length = 65 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ I F Sbjct: 3 NRLRELREERGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGLNIEDIF 60 >gi|260161306|emb|CAZ39274.1| hypothetical protein [Streptococcus suis] gi|260161745|emb|CAZ39290.1| hypothetical protein [Streptococcus suis] Length = 136 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPIS 71 + G++++ R LGMSQ++L +G+T + + YE +R G R + ++E L ++ Sbjct: 1 MTFGEKVKAERTKLGMSQDELAAKIGVTRRIIGSYENDKSRPRGMERYKKLAESLNVNVN 60 Query: 72 FFFDVSPTVCSDISSE 87 + +D+ + Sbjct: 61 YLLSEDDAFIADVEDK 76 >gi|237748329|ref|ZP_04578809.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229379691|gb|EEO29782.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 131 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 + KRI R L SQ +L +G+T Q VQK+EK L+ ++ VL ++ Sbjct: 4 IAKRIENCRRHLNFSQSELARKVGVTPQAVQKWEKAKTVPRGYTLEKLAGVLGVSPAYIQ 63 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F ++ S E+ +++ T Sbjct: 64 FGITDASSGGHFSVEDEKTEYLVT 87 >gi|239625412|ref|ZP_04668443.1| dna-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239519642|gb|EEQ59508.1| dna-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 67 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR RR G+SQE+L G++ Q V E + H+++ L + + F Sbjct: 5 IRERRKERGISQEELAGKCGVSRQTVNAIENNKYDPTLALAFHLAQELGTTVDGLF 60 >gi|212696965|ref|ZP_03305093.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM 7454] gi|212676053|gb|EEB35660.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM 7454] Length = 212 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ + +D +GK I+ R+ +S +KL E + ++ + + E G + L+ IS+ Sbjct: 22 KEKGDQMDK-LGKNIKNSRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQ 80 Query: 65 VLESPISFFF 74 L+ P+ F Sbjct: 81 HLKVPMFTLF 90 >gi|15801491|ref|NP_287508.1| transcriptional repressor DicA [Escherichia coli O157:H7 EDL933] gi|15831019|ref|NP_309792.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. Sakai] gi|208814889|ref|ZP_03256068.1| HTH-type transcriptional regulator DicA [Escherichia coli O157:H7 str. EC4045] gi|218694455|ref|YP_002402122.1| transcriptional repressor DicA [Escherichia coli 55989] gi|218704543|ref|YP_002412062.1| transcriptional repressor DicA [Escherichia coli UMN026] gi|254792733|ref|YP_003077570.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|260854926|ref|YP_003228817.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|260868007|ref|YP_003234409.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|261226536|ref|ZP_05940817.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. FRIK2000] gi|261254853|ref|ZP_05947386.1| putative phage repressor protein [Escherichia coli O157:H7 str. FRIK966] gi|291282288|ref|YP_003499106.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|293404421|ref|ZP_06648415.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298380199|ref|ZP_06989804.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|300896137|ref|ZP_07114689.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|301017544|ref|ZP_07182222.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|12514990|gb|AAG56120.1|AE005343_10 similar to DicA, regulator of DicB encoded by prophage CP-933O [Escherichia coli O157:H7 str. EDL933] gi|13361230|dbj|BAB35188.1| putative regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|208731537|gb|EDZ80225.1| HTH-type transcriptional regulator DicA [Escherichia coli O157:H7 str. EC4045] gi|218351187|emb|CAU96891.1| repressor protein of division inhibition from bacteriophage origin [Escherichia coli 55989] gi|218431640|emb|CAR12520.1| repressor protein of division inhibition from bacteriophage origin [Escherichia coli UMN026] gi|254592133|gb|ACT71494.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. TW14359] gi|257753575|dbj|BAI25077.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|257764363|dbj|BAI35858.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|290762161|gb|ADD56122.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|291429007|gb|EFF02032.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298279897|gb|EFI21405.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|300359966|gb|EFJ75836.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|300400161|gb|EFJ83699.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|320637417|gb|EFX07224.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. G5101] gi|320642724|gb|EFX11945.1| transcriptional repressor DicA [Escherichia coli O157:H- str. 493-89] gi|320648078|gb|EFX16758.1| transcriptional repressor DicA [Escherichia coli O157:H- str. H 2687] gi|320653638|gb|EFX21722.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659531|gb|EFX27100.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. USDA 5905] gi|320664667|gb|EFX31818.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. LSU-61] gi|323153261|gb|EFZ39521.1| HTH-type transcriptional regulator dicA [Escherichia coli EPECa14] gi|323178022|gb|EFZ63604.1| HTH-type transcriptional regulator dicA [Escherichia coli 1180] gi|326344486|gb|EGD68237.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. 1044] gi|326346335|gb|EGD70072.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. 1125] Length = 135 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ Sbjct: 7 GARLLYRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLF 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +N ++ T D +L + F + + + ++ ++ +R+ Sbjct: 67 GDEDKQPGEPIPDNQPVNL--TEDQKELLQLFDALPESE-QKALLSEMRA 113 >gi|125973269|ref|YP_001037179.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003748|ref|ZP_05428736.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417471|ref|ZP_06248491.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713494|gb|ABN51986.1| transcriptional regulator, XRE family with cupin sensor [Clostridium thermocellum ATCC 27405] gi|255992309|gb|EEU02403.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408873|gb|EFB39131.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940499|gb|ADU74533.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum DSM 1313] Length = 179 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ M+QE+L + ++ + + E + + L I + L + + Sbjct: 1 MQIGAKIRQLRIANQMTQEELADRAELSKGFISQIENDLTSPSINTLVDILQCLGTDLKT 60 Query: 73 FFDVSPT 79 FF S Sbjct: 61 FFSDSED 67 >gi|308067920|ref|YP_003869525.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857199|gb|ADM68987.1| Transcriptional regulator [Paenibacillus polymyxa E681] Length = 122 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 4/113 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G+ QE+L + LGIT + YEK + L ++++ I + Sbjct: 4 GSRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFEILTKLADIFGVTIDYLVG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID----DVKVRQKIIELVR 124 + + + S+ +D + D L R+ + ID + ++ I VR Sbjct: 64 RTSHPAAILDSDVREFVDQLELSDEDILRRFNLTIDGRTLSEEEAKRFIAFVR 116 >gi|300856317|ref|YP_003781301.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300436432|gb|ADK16199.1| predicted DNA binding protein [Clostridium ljungdahlii DSM 13528] Length = 401 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R G + + L E +G++ Q + ++E G + L I + L+ P +F++ Sbjct: 19 GERLKSARKYRGKTIKDLAEDIGVSKQAISQFENGKSTPLFETLIKIVDKLKFPREYFYE 78 Query: 76 VSP 78 Sbjct: 79 KDK 81 >gi|297160908|gb|ADI10620.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 387 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLES 68 P + ++G R+R R G+SQ L G++ ++K E+G + ++ L Sbjct: 2 PEETHIGARLRKIRKRRGLSQRDLAVASGVSLSLIRKLEQGTLDDTRMETAHQLAVGLRV 61 Query: 69 PISFFFDVSPTVCSDISSEE 88 P S + +D ++ + Sbjct: 62 PTSSLLERDDEESADDTAGQ 81 >gi|325677709|ref|ZP_08157361.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110677|gb|EGC04841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 369 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ R ++QE+L + LGIT + V ++E S+L ++ + Sbjct: 1 MTIGATIKQLRQEQDITQEQLADALGITSRAVSQWETDRTAPDISQLPALANFFDVTTDH 60 Query: 73 FFDVSPTVCSD 83 V + Sbjct: 61 LLGVDIARKEE 71 >gi|257085321|ref|ZP_05579682.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|293382363|ref|ZP_06628302.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] gi|293389375|ref|ZP_06633833.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis S613] gi|312907395|ref|ZP_07766386.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 512] gi|312910013|ref|ZP_07768860.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 516] gi|256993351|gb|EEU80653.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|291080308|gb|EFE17672.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] gi|291081262|gb|EFE18225.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis S613] gi|310626423|gb|EFQ09706.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 512] gi|311289286|gb|EFQ67842.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 516] gi|315575524|gb|EFU87715.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309B] gi|315577563|gb|EFU89754.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] gi|315580035|gb|EFU92226.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309A] Length = 102 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N G++++ R G+ +L G+ + + EKG+ + ++ +++ L +S Sbjct: 1 MNFGEKLKYLRESKGLGVNQLALKSGVNASNISRLEKGIRKDPTFDTVKKLAKALGVSVS 60 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 +F D + + + +++V + Sbjct: 61 YFDDEEKEINTVAAHIDDDVTE 82 >gi|237786506|ref|YP_002907211.1| HTH_3 family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759418|gb|ACR18668.1| transcriptional regulator, HTH_3 family [Corynebacterium kroppenstedtii DSM 44385] Length = 498 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 18/141 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R++ R +SQ L LG++ V + E + +S L+ I+ V +F Sbjct: 14 VFVGTRLKQLRKERELSQATLAHALGLSASYVNQIENDSRPLTSSVLRKITHVFGIDEAF 73 Query: 73 FFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR---- 124 F D++ + I + L ++ + ++++ R Sbjct: 74 FSREDDSRLVAEVHDVTLDREVCPTSIDVQEVADLVH-----THPELARALVDIHRRYRN 128 Query: 125 -----SIVSSEKKYRTIEEEC 140 S+V+ E+ +E+ Sbjct: 129 VSDKLSLVTEERNRSDVEDSS 149 >gi|213966012|ref|ZP_03394201.1| DNA-binding protein [Corynebacterium amycolatum SK46] gi|213951307|gb|EEB62700.1| DNA-binding protein [Corynebacterium amycolatum SK46] Length = 478 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L + LG++ V + E V + L I++ +FF Sbjct: 9 YVGSRLRQLRRERDLSQAALAQALGLSASYVNQIEHDVRPLTVPVLLRITDTFGVDATFF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S V D + + Sbjct: 69 ------SRDDDSRLLAEVQDVVMDKE 88 >gi|116334693|ref|YP_796220.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100040|gb|ABJ65189.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 120 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQE+L + +T Q V K+E+G L ++ VL + Sbjct: 8 QLSQLRRQAGLSQEQLASQVFVTRQSVSKWEQGETTPDLDTLISLATVLGVSLDELVSGR 67 Query: 78 PTVCSDISSE 87 T +E Sbjct: 68 STATHQTETE 77 >gi|83717916|ref|YP_440408.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83651741|gb|ABC35805.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 236 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 12/131 (9%) Query: 1 MVGNKKIPNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + + P + V G +IR R L + ++ GI+ + + E+G+ + Sbjct: 44 MVPSTENTRPANAGVALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITS 103 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFI 108 L I+ L + +F + S ++ F + P+G QL + Sbjct: 104 LAGIAHALGVTVQYFVETPSEERSVCRGDQLRFFSFADSANLFARLTNVPEGRQLEAILV 163 Query: 109 QIDDVKVRQKI 119 ++ + R ++ Sbjct: 164 RMPPGQKRSEV 174 >gi|89893492|ref|YP_516979.1| hypothetical protein DSY0746 [Desulfitobacterium hafniense Y51] gi|89332940|dbj|BAE82535.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 134 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 +++R+ R G+SQE+L E + ++ Q V K+E +L +S+ + Sbjct: 8 EKLRVLRKEKGLSQEQLAEMVNVSRQAVSKWESEQAYPELDKLILLSDFFNISLDDLIKD 67 Query: 75 ----DVSPTVCSDISSEENNVMD 93 DV+ + S E++ D Sbjct: 68 KNPEDVAKNNDNSDSKEDDEETD 90 >gi|325663237|ref|ZP_08151687.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470691|gb|EGC73921.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium 4_1_37FAA] Length = 120 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RI++ R+ G++QE + + + IT + E G +V L I+ L + Sbjct: 8 IGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSVSVD 64 >gi|269792208|ref|YP_003317112.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099843|gb|ACZ18830.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 117 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+++ R G++Q+ L + + ++ +Q E R L+ ++E L+ ++ Sbjct: 1 MSLGMRVKVLRRAKGLTQQGLADTVNVSRVYIQSIESNRRRPSMDLLERLAEALDVTVAD 60 Query: 73 FFDVSPTVCSDISSEE 88 SP + EE Sbjct: 61 LVKDSPGDGKRMQLEE 76 >gi|229074788|ref|ZP_04207803.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] gi|229096338|ref|ZP_04227311.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|229115293|ref|ZP_04244702.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228668125|gb|EEL23558.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228687298|gb|EEL41203.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|228708300|gb|EEL60458.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] Length = 149 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD-------GLQLNRYFIQIDDVKV 115 + + I +E DF + GL + FI+ + ++V Sbjct: 61 LIKGNQSFKEKIHIDEEE-ADFEKENEFGFYIGCGLLIMSAFIEYEKIQV 109 >gi|312887654|ref|ZP_07747246.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299869|gb|EFQ76946.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 124 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 KR ++ R ++Q ++ + LG+T VQK+E G + +Q + + L + +FF Sbjct: 11 KRFKIFRKYKDLTQIQIADVLGVTQPAVQKWESGATDLSIEIIQKLRDKLNMSLEWFFTG 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + + SS ++ ++ + Sbjct: 71 KGTKEFVAAKSSIMKDMATILTDSE 95 >gi|301310632|ref|ZP_07216571.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] gi|300832206|gb|EFK62837.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] Length = 138 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 10/129 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ QE L + +G++ + YEK + + L+ I++ L+ P + Sbjct: 20 GANLKRWREWRGIKQEVLADKIGVSQATLSGYEK-KDELEPEVLEKITKALDIPTEAITE 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ +I S D + +Q N+ F ID KI+EL ++ +E++ Sbjct: 79 LNEGALINIYS--GTWQDNATAAGSIQ-NQTFNPID------KIVELYERLLKAEQEKVA 129 Query: 136 IEEECMVEQ 144 + E + ++ Sbjct: 130 MLHEIIKDK 138 >gi|256024105|ref|ZP_05437970.1| Repressor protein C2 [Escherichia sp. 4_1_40B] Length = 208 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R + G SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTGTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSIDY 61 >gi|206971646|ref|ZP_03232596.1| transcriptional regulator Xre [Bacillus cereus AH1134] gi|206733631|gb|EDZ50803.1| transcriptional regulator Xre [Bacillus cereus AH1134] Length = 117 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 7/120 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++L G++Q++L + +G++ V Y +G G LQ I+ L + + Sbjct: 5 QRLKLLIEKRGITQQQLADAIGVSHVSVYNYVEGKKSPGTRTLQKIANHLNVTTDYLLGL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S + D+++++ D T + ++ + + + + R+K +E + VS EK I Sbjct: 65 SDS--PDLTADQ----DLQLTKEAQEILQIINDLPEEQ-RKKALEQLEMFVSYEKAKGNI 117 >gi|134300624|ref|YP_001114120.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053324|gb|ABO51295.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 139 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R +++E + LG+T + V YE G + +L +++ + + + Sbjct: 27 IGERLRQLRKEKNINREDVANLLGVTVRSVTNYESGQRNLDPDQLIALADYYDVSMDYLT 86 Query: 75 DVS----PTVCSDISSEENNVMDFIS 96 S P + I E V + + Sbjct: 87 GRSDNPKPPQTTTIDDEWPEVANVLR 112 >gi|324989664|gb|EGC21608.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 168 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEEN 89 + SE+ Sbjct: 66 SDKPEIKPVLSEDE 79 >gi|313898355|ref|ZP_07831892.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956737|gb|EFR38368.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 268 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +I R L +Q +L E LG++ + + K+E+GV S L + L +S Sbjct: 4 KEIGMQISAARKKLKYTQRELAEKLGVSDKTISKWERGVGYPDISLLLPLCRELGIEVSQ 63 Query: 73 FFDVSPTVCSDISSEEN 89 T +E+N Sbjct: 64 LLGDEETDTQKQGNEKN 80 >gi|257416855|ref|ZP_05593849.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257158683|gb|EEU88643.1| predicted protein [Enterococcus faecalis ARO1/DG] Length = 239 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++RR LG++Q ++ E L +T Q + +E + L +S + E + Sbjct: 1 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDR 60 Query: 73 FFDVSPTVCSDISSEENN 90 T+ +S + Sbjct: 61 LLKEDNTMVEKLSKDIRE 78 >gi|255526983|ref|ZP_05393876.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185146|ref|ZP_06853556.1| cupin domain protein [Clostridium carboxidivorans P7] gi|255509342|gb|EET85689.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049980|gb|EFG89404.1| cupin domain protein [Clostridium carboxidivorans P7] Length = 181 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IR R ++ + L G++ + + E + + + L+ IS+ L I++FF Sbjct: 5 IAQKIRDLRKEKNLTLKDLSNETGLSISFLSQVENNSSSLAITSLKKISDALGVNINYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFI-STPDGLQLNRYFI 108 ++ + SE+ S + ++L+ F Sbjct: 65 EIPEVNNFLVKSEDEKPFKIEGSNSEFIRLSGEFP 99 >gi|253578635|ref|ZP_04855906.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849578|gb|EES77537.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 220 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 37 KLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 96 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ + Sbjct: 97 WLKGETDEYETDITDKRE 114 >gi|229087336|ref|ZP_04219477.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44] gi|228695973|gb|EEL48817.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44] Length = 185 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 37/74 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D N+G +I+ R+ M+ +++ E ++ + + E+ + + L+ +SE L Sbjct: 1 MDENIGNKIKALRLEKRMTLKQVSEKTNLSISFISQVERSKSSITLESLKKLSEALHVSP 60 Query: 71 SFFFDVSPTVCSDI 84 S+FF ++I Sbjct: 61 SYFFAAEQKSNTNI 74 >gi|229179916|ref|ZP_04307262.1| Helix-turn-helix domain protein [Bacillus cereus 172560W] gi|228603597|gb|EEK61072.1| Helix-turn-helix domain protein [Bacillus cereus 172560W] Length = 277 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 19 GEKLFKLRKEKGLSQEALAEKLNTTRQGVSKWENGQGFPETGKLIMIGNVFEVSLDYLLK 78 Query: 76 VSPTVCSD 83 + ++ Sbjct: 79 ETAEQSNE 86 >gi|154504923|ref|ZP_02041661.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC 29149] gi|153794806|gb|EDN77226.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RI++ R+ G++QE + + + IT + E G +V L I+ L + Sbjct: 8 IGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSVSVD 64 >gi|56696467|ref|YP_166824.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678204|gb|AAV94870.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 217 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 17/117 (14%) Query: 1 MVGNKKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 M + P+ V ++ +G+ +R R G++ +L + ++ + K E G Sbjct: 9 MTQLLQDPHSVREEREKVLEVAIGREVRAFRKQQGITVAELSKLTDLSIGMLSKIENGNT 68 Query: 53 RVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + LQ ++ L P++ FF I ++ GL++ R + Sbjct: 69 SPSLTTLQTLANALSVPLTAFFKGYEEKREAIHTKAG---------QGLEIERAGTR 116 >gi|332361288|gb|EGJ39092.1| phage transcriptional repressor [Streptococcus sanguinis SK1056] Length = 230 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ RM SQ +L L I K+E G + L ++ +L+ P ++F Sbjct: 4 GSRLKECRMEKHYSQSELANLLKINRASYNKWETGKSVPNQKNLSALARILDVPTTYF 61 >gi|307315901|ref|ZP_07595401.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306898447|gb|EFN29134.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 161 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE-S 68 +D + ++ R G+S+ L LG++ +YE+G R+ RL H+ E++ Sbjct: 36 MDEKISAWLKKTREAKGISRADLAHLLGLSVSVYGRYERGSEARLSIPRLIHLCEIMGFM 95 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 P+ FD +P + E + L L + ++ +R +I L+R + Sbjct: 96 PLDVIFDAAPHLWGKTLEEAEDR---------LTLMKLIEELPQDTMRD-LIRLLRRMTP 145 Query: 129 SEKKYRTI 136 E T+ Sbjct: 146 GEPAADTV 153 >gi|288959791|ref|YP_003450131.1| transcriptional regulator [Azospirillum sp. B510] gi|288912099|dbj|BAI73587.1| transcriptional regulator [Azospirillum sp. B510] Length = 118 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 4/98 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GKR+R R +SQE + + + + V E+G L +S L Sbjct: 1 MSDDLKRRIGKRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRL 60 Query: 67 ESPISFFFDVSPTVCSDISSEEN----NVMDFISTPDG 100 + P+ FFD V S + + V+ +S + Sbjct: 61 DVPLVDFFDDGEAVVSPARAATDMRLREVLRGLSDREA 98 >gi|238924797|ref|YP_002938313.1| hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656] gi|238876472|gb|ACR76179.1| Hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656] gi|291526055|emb|CBK91642.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 108 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G RI++RR L + Q +L E L I+ + E G + I ++L + Sbjct: 2 GNRIKIRRKELRIKQAELAEKLNISNNHMSSIENGRQKPSLDIFIRICDLLNVTPDYL 59 >gi|209518698|ref|ZP_03267515.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209500897|gb|EEA00936.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 200 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +P++ +G IR R G++ ++ E GI+ + K E G L Sbjct: 1 MQTADDSKSPLERYLGATIRELRQSHGLTIAQVAEQAGISRGMLSKIENAQTSAGLDVLH 60 Query: 61 HISEVLESPISFFF 74 I+ L +S F Sbjct: 61 RIAMALGVSMSALF 74 >gi|219666089|ref|YP_002456524.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219536349|gb|ACL18088.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 68 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R+ R G++Q++LGE +G++ Q + E G ++++ + I F Sbjct: 3 NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFNPSLWLAYDLAKLFKVSIEELF 60 >gi|327393407|dbj|BAK10829.1| putative transcriptional regulator from phage origin [Pantoea ananatis AJ13355] Length = 230 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G +IR R GM E+L E +G+ + + E G + + I++ L+ +S Sbjct: 1 MNIGNKIRSLRKARGMKIEELAEAVGVDGANISRLETGKQKSFTEQSINKIAKALKVDVS 60 Query: 72 FFF---DVSPTVCSDISSEENNVMDFISTPDGLQ 102 F PTV +D + + + + + L Sbjct: 61 ELFATGTAEPTVYNDSRNVQEQEPNAMYRVEVLD 94 >gi|291556308|emb|CBL33425.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 301 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R M+QE L E + ++ Q V K+E +L +S+ + Sbjct: 1 MSLGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDE 60 Query: 73 FFDVSPTV--CSDISSEENNVMDFIS 96 S D + + + F S Sbjct: 61 LIKGSAEENFTEDAAGYDKEMNSFTS 86 >gi|315231266|ref|YP_004071702.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] gi|315184294|gb|ADT84479.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] Length = 65 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ I F Sbjct: 3 NRLRELREARGLTQEELAKILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVKIEDIF 60 >gi|167749809|ref|ZP_02421936.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702] gi|167657292|gb|EDS01422.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702] Length = 301 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R M+QE L E + ++ Q V K+E +L +S+ + Sbjct: 1 MSLGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDE 60 Query: 73 FFDVSPTV--CSDISSEENNVMDFIS 96 S D + + + F S Sbjct: 61 LIKGSAEENFTEDAAGYDKEMNSFTS 86 >gi|82777173|ref|YP_403522.1| repressor protein CI [Shigella dysenteriae Sd197] gi|309788320|ref|ZP_07682924.1| repressor protein CI [Shigella dysenteriae 1617] gi|81241321|gb|ABB62031.1| repressor protein CI [Shigella dysenteriae Sd197] gi|308923702|gb|EFP69205.1| repressor protein CI [Shigella dysenteriae 1617] Length = 237 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%) Query: 17 KRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ ++ LG+SQE L LG+T V + G+N + AS ++++L + Sbjct: 17 KRLKSIFNAKKKELGLSQESLAYELGVTQSAVSQLMAGINAINASHAAQLAKILNVKVGD 76 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 F SP++ I+ + + ++ Sbjct: 77 F---SPSLAKSIAEMALAIEEPLT 97 >gi|322412342|gb|EFY03250.1| Phage transcriptional repressor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ RM SQ +L L I K+E G + L ++ +L+ P ++F Sbjct: 4 GSRLKECRMEKHYSQSELANLLKINRASYNKWETGKSVPNQKNLSALARILDVPTTYF 61 >gi|313113313|ref|ZP_07798912.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624366|gb|EFQ07722.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 120 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 16/121 (13%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I +GK+I+ R + M+Q++L ++ + + E G L I VL Sbjct: 3 MPNADAIALGKQIKAVRKAMKMTQDQLALKSNVSVKYIANIENGKQNPSFDILSAILHVL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S + + ++S E + + + L ++R+ +++ RS+ Sbjct: 63 --PLS----LDSVINPNLSEAERECREL----ESIYLA------CPPEMRKTLLDATRSL 106 Query: 127 V 127 Sbjct: 107 A 107 >gi|307704502|ref|ZP_07641410.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307621915|gb|EFO00944.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 116 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--F 74 R++ R G++Q L + L Q KYE G + Q +SE I + + Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSLENAQILSEYFGVSIPYLLGY 62 Query: 75 DVSPTVCSDISS---EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + TV ++ E + FIS +L + + I+ K + ++E +RS Sbjct: 63 EENSTVNKPNATILIELVKELSFISEKKS-KLLQEY--IELDKKERDVLEQIRS 113 >gi|268591074|ref|ZP_06125295.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313881|gb|EFE54334.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 106 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N ++ +G+ +R R ++ E+L + L I+ QQ+ +YE G ++ + I + Sbjct: 5 SNEINKEIGQYLRGIRKERNLTGEELAKRLNISQQQISRYETGKTKLTFEMMDTILLIFN 64 Query: 68 SPISFFFD 75 F+ Sbjct: 65 KSWRDLFN 72 >gi|261409127|ref|YP_003245368.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329923481|ref|ZP_08278961.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261285590|gb|ACX67561.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328941241|gb|EGG37537.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 122 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI R G +QE+L +GIT + YEK + L ++++ + I + Sbjct: 4 GERIAELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYLIG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 + S + E + +D GL+L Sbjct: 64 RTTLEKSVLDPEVRSFVD------GLEL 85 >gi|192291025|ref|YP_001991630.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284774|gb|ACF01155.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 474 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 14/125 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG R+R R GM+Q+ L +G++ + + E + L ++ L + Sbjct: 4 AYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGIDVQL 63 Query: 73 FFDVSPTVCSDISSE---ENNVMDFISTPDGLQLN-------RYFIQIDDVKVRQKIIEL 122 F + E + V + ++ D +L R + I R+ + L Sbjct: 64 FSEDDEARLIADLKEVLSDPMVGESLTANDVRELVTSMPAAGRALVAI----YRRYHLAL 119 Query: 123 VRSIV 127 +S Sbjct: 120 EQSAA 124 >gi|312138107|ref|YP_004005443.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887446|emb|CBH46758.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 182 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 11/91 (12%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L E G+T + K E+G+N + I+ L++ +S F +P Sbjct: 5 LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGINTPSIAVALKIARALDADVSQLFSDTP 64 Query: 79 -----------TVCSDISSEENNVMDFISTP 98 + +++ V D I+T Sbjct: 65 DNSVMAIERHAERAQVDADDDSAVYDAIATR 95 >gi|262404912|ref|ZP_06081465.1| putative transcriptional regulator [Vibrio sp. RC586] gi|262348878|gb|EEY98018.1| putative transcriptional regulator [Vibrio sp. RC586] Length = 107 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQ----KYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+ LG +G+ +YEKG + L+ I++ L+ P+S+F Sbjct: 10 RLKEARKKAKLSQKALGVRIGMDESSASPRMNQYEKGKHTPDVRTLKLIADELDVPLSYF 69 Query: 74 FDVSPTVCS 82 F + Sbjct: 70 FSEDEITAN 78 >gi|258654157|ref|YP_003203313.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557382|gb|ACV80324.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 187 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R G+S L + GI + + E G S L ++ L P+S+ Sbjct: 10 IGERLRAARTEQGLSVGGLAQAAGIGKGSLSEIENGTRNPTLSTLYGLANALGRPLSWL 68 >gi|170761242|ref|YP_001785744.1| TPR repeat-containing DNA binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408231|gb|ACA56642.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 434 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I N+ + Sbjct: 65 ESEDTQAEKICKYYENIAE 83 >gi|153939757|ref|YP_001389775.1| TPR repeat-containing DNA binding protein [Clostridium botulinum F str. Langeland] gi|170755693|ref|YP_001780059.1| TPR repeat-containing DNA binding protein [Clostridium botulinum B1 str. Okra] gi|152935653|gb|ABS41151.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum F str. Langeland] gi|169120905|gb|ACA44741.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum B1 str. Okra] gi|295317864|gb|ADF98241.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum F str. 230613] Length = 434 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I N+ + Sbjct: 65 ESEDTQAEKICKYYENIAE 83 >gi|111222124|ref|YP_712918.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111149656|emb|CAJ61349.1| Putative transcriptional regulator [Frankia alni ACN14a] Length = 453 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 15/116 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +G+ IRL R+ SQ +LG LG + + + E G + + L+ I+ VL P Sbjct: 7 HDPTIGETIRLARLAAHQSQRQLGATLGYSASAISRLETGKSSLDLDTLRSIANVLHIPP 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK------VRQKII 120 ++ N D P L++ + D K R++ + Sbjct: 67 ---------EQLGLAPAHRNPSDTPVAPATLEIPAATLTATDTKDGDDRVHRRRFL 113 >gi|322372600|ref|ZP_08047136.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321277642|gb|EFX54711.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 159 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+ I+ R ++Q +L LGI+ + +YE G + + L I + L Sbjct: 1 MMIGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTSAISTELLDRICQTLNVS 57 >gi|315649281|ref|ZP_07902370.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275269|gb|EFU38638.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 122 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G +QE+L +GIT + YEK + L ++++ + I + Sbjct: 4 GVRISELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYLIG 63 Query: 76 VSPTVCSDISSEENNVMDF--ISTPDGLQ---LNRYFIQIDDVKVRQKIIELVR 124 + + + E + +D +S D L+ L ++ + + R+ I VR Sbjct: 64 RTAQEKAVLDPEVRSFVDGLELSDQDLLERFNLTVDGRKLTEEEARR-FIAFVR 116 >gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 169 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 11/107 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + I+ R G+SQ++L L + Q V K+E+G++ + L +SEVLE+P+S Sbjct: 2 LSENIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVPDSDVLISLSEVLETPVSTL- 60 Query: 75 DVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKII 120 + + E + + IS + + L R+KII Sbjct: 61 -----LGETVMETEADTLKAISEKLEVINLQLA----QRKSTRRKII 98 >gi|99082554|ref|YP_614708.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038834|gb|ABF65446.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 204 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NVG IR RR L ++ + L + G++ + + E+ L IS L+ + +F Sbjct: 11 NVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQISAALDVGLDYF 70 Query: 74 FDVSPTVCSDISSEENNVMDF 94 S S + Sbjct: 71 ISASKPSDGLTRSGSRPLFAL 91 >gi|323142578|ref|ZP_08077394.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413011|gb|EFY03914.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 101 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKRI+ R G++QE+L E LG+ + + E G + + E+ + + F Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIF 97 >gi|289661679|ref|ZP_06483260.1| hypothetical protein XcampvN_00915 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 116 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPISFFF 74 RIR R+ +GMSQ +L + L + V +E+ NR L +S VL ++ F Sbjct: 10 ARIRAARIGVGMSQTELAQKLDVNRATVGHWER-KNRFAPSIDHLYAMSSVLRVSPNWLF 68 Query: 75 DVSP 78 Sbjct: 69 HGED 72 >gi|300024182|ref|YP_003756793.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526003|gb|ADJ24472.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 213 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++ + + I VG+ +R R G+S E+L G++ + + E G + + L I+ Sbjct: 15 SESVATKLSIIVGENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKSAPTINLLGRIA 74 Query: 64 EVLESPI 70 E L+ + Sbjct: 75 EALQVSV 81 >gi|23098799|ref|NP_692265.1| hypothetical protein OB1344 [Oceanobacillus iheyensis HTE831] gi|22777026|dbj|BAC13300.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 189 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 10 PVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P+D+ +G +I+ R+ +Q+++ + GI+ + K E G + L IS+ L+ Sbjct: 3 PIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDALKV 62 Query: 69 PISFFFDVSPTV 80 P+++ D Sbjct: 63 PLAWLLDDKEEQ 74 >gi|322834913|ref|YP_004214940.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321170114|gb|ADW75813.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 95 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI R G++Q KL E LGI Q + YE ++ AS L +S +L+ I Sbjct: 23 LGVRIAEARKSKGLTQRKLAEMLGIAQQTLAHYEVARLKLSASFLPELSRILDCTID 79 >gi|307131684|ref|YP_003883700.1| putative transcriptional regulator [Dickeya dadantii 3937] gi|306529213|gb|ADM99143.1| Putative transcriptional regulator [Dickeya dadantii 3937] Length = 92 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +R+R R +SQE+L GI+ + ++ YE G ++ + +++L+ P Sbjct: 2 VPQRLRAARERAKISQEELAIAAGISEETGYSRMSHYENGRHKPKFELICTFAKILDVPE 61 Query: 71 SFFFDVSPTVCS 82 +F+ + + Sbjct: 62 GYFYTLDDSFAE 73 >gi|326792010|ref|YP_004309831.1| cupin [Clostridium lentocellum DSM 5427] gi|326542774|gb|ADZ84633.1| Cupin 2 conserved barrel domain protein [Clostridium lentocellum DSM 5427] Length = 179 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I R G++QE+L + ++ + + E+G+ + L I E L + + Sbjct: 1 MDIGAKINQLRKKNGLTQEELADRCELSKGFISQVERGLTSPSIATLIDILECLGTNLKD 60 Query: 73 FFDVSPTVCSDISSEE 88 FF+ S + E+ Sbjct: 61 FFNESSQEKIVFTKED 76 >gi|257464093|ref|ZP_05628477.1| MerR family transcriptional regulator [Fusobacterium sp. D12] gi|317061612|ref|ZP_07926097.1| transcriptional regulator [Fusobacterium sp. D12] gi|313687288|gb|EFS24123.1| transcriptional regulator [Fusobacterium sp. D12] Length = 184 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+GK I+ R+ G+ +++ I+ + + EKG + ++ I++ LE P+ Sbjct: 5 INIGKTIKNIRISKGLLLKEVASKCDISSSMLSQIEKGNANPSLNTIKAIAQALEVPLFK 64 Query: 73 FFDVSPTV 80 FF S Sbjct: 65 FFINSEET 72 >gi|229080834|ref|ZP_04213352.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] gi|228702568|gb|EEL55036.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] Length = 262 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKKKGLSQEALAEKLSTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEQSNE 71 >gi|229084370|ref|ZP_04216650.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] gi|228698910|gb|EEL51615.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] Length = 107 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL++P+ Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQTPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 P S + SE Sbjct: 62 LHDEPAAESQLDSE 75 >gi|168212390|ref|ZP_02638015.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170716178|gb|EDT28360.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 180 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATSLKLDLKS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 FFD D EE+ + +S Sbjct: 61 FFD-------DTLLEEDYYLKPLS 77 >gi|148378407|ref|YP_001252948.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A str. ATCC 3502] gi|153932397|ref|YP_001382785.1| TPR repeat-containing DNA binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936558|ref|YP_001386336.1| TPR repeat-containing DNA binding protein [Clostridium botulinum A str. Hall] gi|148287891|emb|CAL81957.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928441|gb|ABS33941.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A str. ATCC 19397] gi|152932472|gb|ABS37971.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A str. Hall] Length = 434 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I N+ + Sbjct: 65 ESEDTQAEKICKYYENIAE 83 >gi|49483261|ref|YP_040485.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425150|ref|ZP_05601576.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427813|ref|ZP_05604211.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430448|ref|ZP_05606830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433150|ref|ZP_05609508.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436049|ref|ZP_05612096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282903647|ref|ZP_06311535.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|282905416|ref|ZP_06313271.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282908388|ref|ZP_06316219.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910675|ref|ZP_06318478.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282913873|ref|ZP_06321660.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282918797|ref|ZP_06326532.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282923919|ref|ZP_06331595.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|283770160|ref|ZP_06343052.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283957842|ref|ZP_06375293.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|293500910|ref|ZP_06666761.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509866|ref|ZP_06668575.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293526452|ref|ZP_06671137.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|295427586|ref|ZP_06820218.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591460|ref|ZP_06950098.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|49241390|emb|CAG40074.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272126|gb|EEV04258.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274654|gb|EEV06141.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278576|gb|EEV09195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281243|gb|EEV11380.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284331|gb|EEV14451.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282313891|gb|EFB44283.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282316607|gb|EFB46981.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282321941|gb|EFB52265.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282325280|gb|EFB55589.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282328053|gb|EFB58335.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330708|gb|EFB60222.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282595265|gb|EFC00229.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|283460307|gb|EFC07397.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283470309|emb|CAQ49520.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ST398] gi|283789991|gb|EFC28808.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920524|gb|EFD97587.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|291095915|gb|EFE26176.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467316|gb|EFF09833.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|295127944|gb|EFG57578.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576346|gb|EFH95062.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|312438525|gb|ADQ77596.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315193766|gb|EFU24161.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 179 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENEKVLYKKEEQVIYD 81 >gi|197286830|ref|YP_002152702.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227354987|ref|ZP_03839398.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194684317|emb|CAR45916.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227164774|gb|EEI49621.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 106 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + +VG +R R M+ ++L + ++ QQ+ +YE G + +L + +L Sbjct: 2 KSNMISGHVGIFLRKARKEKNMTGKQLARLMNVSQQQISRYEIGATAITVDQLANFLLIL 61 Query: 67 E 67 + Sbjct: 62 D 62 >gi|187939670|gb|ACD38813.1| predicted transcriptional regulator protein [Pseudomonas aeruginosa] gi|187939749|gb|ACD38890.1| hypothetical protein PACL_0632 [Pseudomonas aeruginosa] Length = 271 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++L R ++Q +L E +G++ + + EKG N L I+ V + + + Sbjct: 1 MKLARKHADLTQRQLAEAVGVSQPVISQLEKGENLQSV-HLLKIANVCGVDPEWLAEGTG 59 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKIIELVRSIVS 128 + E + ++ + + R ++ + R++I+ S Sbjct: 60 RPPGFSAREPS--AEYQAASSTADIVRSMLASKAAQKL-SAEARERILNAAESDAG 112 >gi|160937325|ref|ZP_02084687.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] gi|158439889|gb|EDP17638.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] Length = 88 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 D + G I+ R + GM Q++L + +GI Q + K E+GV L+ I VLE Sbjct: 3 DKHFGPNIQTFRKLKGMKQQELADAIGINLQSLSKIERGVYYPTFETLEKIMVVLEV 59 >gi|332992547|gb|AEF02602.1| XRE family transcriptional regulator [Alteromonas sp. SN2] Length = 87 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R G+SQ++LG G+ ++ +YEKGV+ ++ ++EVL+ P +F Sbjct: 10 KRLKQARKDRGLSQKQLGILSGMDEFSASARMNQYEKGVHSPDFKTVKALAEVLKVPTAF 69 Query: 73 FFDVSPTVCSDISSEEN 89 + + I+S +N Sbjct: 70 LYCEEDDLAEQIASFKN 86 >gi|323701996|ref|ZP_08113665.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323533082|gb|EGB22952.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 180 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IR R ++ ++L E G++ + + E+G + + + L+ I++ L PI+ FF Sbjct: 4 ICEKIRSLRNQQNLTLKELSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVPITSFF 63 Query: 75 DVSPTVCSDISSEENNVMDFI-STPDGLQLNRYF 107 + EE ST + ++L F Sbjct: 64 TSYQNQNFLVKKEEQKAFRIEGSTAEYIRLGGEF 97 >gi|322804684|emb|CBZ02236.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum H04402 065] Length = 434 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I N+ + Sbjct: 65 ESEDTQAEKICKYYENIAE 83 >gi|320528113|ref|ZP_08029278.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131461|gb|EFW24026.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 176 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK ++ R G++QE+L E +G+T + V ++E G N L +S+ + Sbjct: 6 IGKLLQTLRKEKGITQEQLAEQVGVTRRTVSRWETGSNMPDLDVLIELSDFYAVDL 61 >gi|317472207|ref|ZP_07931536.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp. 3_2_56FAA] gi|331088310|ref|ZP_08337229.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium 3_1_46FAA] gi|316900296|gb|EFV22281.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp. 3_2_56FAA] gi|330408554|gb|EGG88020.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium 3_1_46FAA] Length = 120 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RI++ R+ G++QE + + + IT + E G +V L I+ L + Sbjct: 8 IGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSVSVD 64 >gi|298694333|gb|ADI97555.1| probable transcriptional regulator [Staphylococcus aureus subsp. aureus ED133] Length = 179 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENEKVLYKKEEQVIYD 81 >gi|297158106|gb|ADI07818.1| transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 193 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 4/106 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + IR R G+S +L + GI + + E G L IS L+ P S Sbjct: 19 IAASIRKERGRAGLSLSELAKRAGIAKSTLSQLESGAGNPSVETLWAISVTLDVPFSRLV 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 D + + E + + L R+ I Sbjct: 79 DPPRPPVTVLRHGEGIAVPSERSNYVATLLAS----SPPNARRDIY 120 >gi|291542946|emb|CBL16056.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 130 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 18/131 (13%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K+ + +D +VG R+R R+ G++Q+++ + L I KYE GV+ L I Sbjct: 2 PKRKCSNIDASVGLRMRYYRIQCGLTQQQVADALKINRTTYTKYETGVSEPSHELLGKIV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ + D ++ + + ++ ++ + + II Sbjct: 62 KMFGIDYNAILDNRDYFERRVA-DGDMTLNVLTLSE-----------------RAIIARY 103 Query: 124 RSIVSSEKKYR 134 RS+ ++K Sbjct: 104 RSMSKEDQKKI 114 >gi|70730070|ref|YP_259809.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344369|gb|AAY91975.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 208 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R G++ +L + +T + + E+ + L +I+ L I +F Sbjct: 28 FLGTRIRGLRKRRGLTLSELAQQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWF 87 Query: 74 F 74 F Sbjct: 88 F 88 >gi|15924088|ref|NP_371622.1| Cro/CI family transcriptional regulator protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926683|ref|NP_374216.1| hypothetical protein SA0949 [Staphylococcus aureus subsp. aureus N315] gi|21282710|ref|NP_645798.1| hypothetical protein MW0981 [Staphylococcus aureus subsp. aureus MW2] gi|49485936|ref|YP_043157.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651707|ref|YP_185971.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus COL] gi|87161040|ref|YP_493696.1| hypothetical protein SAUSA300_0998 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194797|ref|YP_499594.1| hypothetical protein SAOUHSC_01045 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267591|ref|YP_001246534.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393646|ref|YP_001316321.1| hypothetical protein SaurJH1_1180 [Staphylococcus aureus subsp. aureus JH1] gi|151221176|ref|YP_001331998.1| hypothetical protein NWMN_0964 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979421|ref|YP_001441680.1| hypothetical protein SAHV_1090 [Staphylococcus aureus subsp. aureus Mu3] gi|161509281|ref|YP_001574940.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140502|ref|ZP_03564995.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316351|ref|ZP_04839564.1| hypothetical protein SauraC_09456 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731709|ref|ZP_04865874.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733667|ref|ZP_04867832.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255005885|ref|ZP_05144486.2| hypothetical protein SauraM_05430 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795171|ref|ZP_05644150.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407120|ref|ZP_05680269.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421788|ref|ZP_05684709.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|258423598|ref|ZP_05686488.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258436152|ref|ZP_05689135.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443359|ref|ZP_05691702.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258444969|ref|ZP_05693286.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258449856|ref|ZP_05697954.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258451955|ref|ZP_05699971.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258454955|ref|ZP_05702918.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|262048684|ref|ZP_06021566.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262052206|ref|ZP_06024412.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|269202709|ref|YP_003281978.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282894125|ref|ZP_06302356.1| DNA-binding protein [Staphylococcus aureus A8117] gi|282925282|ref|ZP_06332939.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282928620|ref|ZP_06336217.1| DNA-binding protein [Staphylococcus aureus A10102] gi|284024023|ref|ZP_06378421.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848087|ref|ZP_06788834.1| DNA-binding protein [Staphylococcus aureus A9754] gi|295405902|ref|ZP_06815711.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296276499|ref|ZP_06859006.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208264|ref|ZP_06924694.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246372|ref|ZP_06930216.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300912341|ref|ZP_07129784.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381344|ref|ZP_07363997.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700899|dbj|BAB42195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246868|dbj|BAB57260.1| similar to transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus Mu50] gi|21204148|dbj|BAB94846.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244379|emb|CAG42807.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285893|gb|AAW37987.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus COL] gi|87127014|gb|ABD21528.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202355|gb|ABD30165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740660|gb|ABQ48958.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149946098|gb|ABR52034.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373976|dbj|BAF67236.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721556|dbj|BAF77973.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368090|gb|ABX29061.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724523|gb|EES93252.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728367|gb|EES97096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257789143|gb|EEV27483.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257841275|gb|EEV65720.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842121|gb|EEV66549.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|257846299|gb|EEV70323.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257848841|gb|EEV72826.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851449|gb|EEV75388.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257856091|gb|EEV79009.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257856776|gb|EEV79679.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257860170|gb|EEV83002.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257862835|gb|EEV85600.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|259159877|gb|EEW44915.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|259163140|gb|EEW47700.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262074999|gb|ACY10972.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|269940593|emb|CBI48972.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282589659|gb|EFB94745.1| DNA-binding protein [Staphylococcus aureus A10102] gi|282592558|gb|EFB97568.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282763611|gb|EFC03740.1| DNA-binding protein [Staphylococcus aureus A8117] gi|285816779|gb|ADC37266.1| putative DNA-binding protein [Staphylococcus aureus 04-02981] gi|294824887|gb|EFG41309.1| DNA-binding protein [Staphylococcus aureus A9754] gi|294969337|gb|EFG45357.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296887003|gb|EFH25906.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176738|gb|EFH35998.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300886587|gb|EFK81789.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302332708|gb|ADL22901.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus JKD6159] gi|302750922|gb|ADL65099.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340327|gb|EFM06268.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829492|emb|CBX34334.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130316|gb|EFT86303.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315196128|gb|EFU26485.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320141086|gb|EFW32933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143143|gb|EFW34933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440647|gb|EGA98357.1| transcriptional regulator [Staphylococcus aureus O11] gi|323441674|gb|EGA99320.1| transcriptional regulator [Staphylococcus aureus O46] gi|329313766|gb|AEB88179.1| Transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus T0131] gi|329730799|gb|EGG67178.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 179 Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENEKVLYKKEEQVIYD 81 >gi|332800291|ref|YP_004461790.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332698026|gb|AEE92483.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 103 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 16/110 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R LG+S +L G++ + + E G + L+ I L + FF Sbjct: 8 IGKRIRQLRESLGLSNRQLAIKAGLSQPVMNRIENGNRKADIETLEKICYALGITLIDFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + +P+ L+L + ++ ++ + + ++++ Sbjct: 68 SIDEEEM---------------SPEYLELLKNAKKLSTEQL-KILNDIIK 101 >gi|322389322|ref|ZP_08062881.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] gi|321143986|gb|EFX39405.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] Length = 291 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R +GMSQE L E +G++ Q V K+E G + IS + I Sbjct: 5 EKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENIISISNLFNISID 59 >gi|302334962|ref|YP_003800169.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318802|gb|ADK67289.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 198 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G++Q++L E L ++ Q + +E G + + ++ + Sbjct: 1 MEIGQRMRALRQGAGLTQDELAERLYVSRQTISNWETGKSYPDVESVSLACDLFDVSADA 60 Query: 73 FFDVSPTVCSDISSEEN 89 SEE+ Sbjct: 61 LLKGDIMEMGKRVSEED 77 >gi|238912425|ref|ZP_04656262.1| hypothetical protein SentesTe_15010 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 97 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R+ +QEKLG GI ++ +YE G++R + + VL P + Sbjct: 15 ARLKSARLRANFTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFARVLNVPECY 74 Query: 73 FFDVSPTVCSDI 84 F+ V + Sbjct: 75 FYTVDDDFAEAV 86 >gi|218547977|ref|YP_002381768.1| Cro/CI family transcriptional regulator [Escherichia fergusonii ATCC 35469] gi|218355518|emb|CAQ88129.1| putative transcriptional regulator, Cro/CI family from phage origin [Escherichia fergusonii ATCC 35469] Length = 228 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+++ R I GMSQ +L E +G++ Q V K E G + +++ I++VL + Sbjct: 6 ERLKIGREIAGMSQAQLAEKIGLSQQSVAKIENGET-LQPRKIKEIAKVLGVSQKWL 61 >gi|168177751|ref|ZP_02612415.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum NCTC 2916] gi|168181271|ref|ZP_02615935.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum Bf] gi|226947637|ref|YP_002802728.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum A2 str. Kyoto] gi|237793726|ref|YP_002861278.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182671545|gb|EDT83519.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum NCTC 2916] gi|182675370|gb|EDT87331.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum Bf] gi|226840984|gb|ACO83650.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A2 str. Kyoto] gi|229261791|gb|ACQ52824.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum Ba4 str. 657] Length = 434 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I N+ + Sbjct: 65 ESEDTQAEKICKYYENIAE 83 >gi|149277242|ref|ZP_01883384.1| possible transcriptional regulator [Pedobacter sp. BAL39] gi|149232119|gb|EDM37496.1| possible transcriptional regulator [Pedobacter sp. BAL39] Length = 86 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V I+ R I ++QE L L I+ K E G +++ R+ I+++L + Sbjct: 12 VAGNIKKIRKIKSLTQEFLAAKLDISQNAYSKIELGHSKLTVERMYQIADILNVDVIQLL 71 Query: 75 DVSPTVCSD 83 P SD Sbjct: 72 SPIPNNFSD 80 >gi|71908183|ref|YP_285770.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847804|gb|AAZ47300.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 120 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 3/96 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK + ++G + RR LG +QE + E +G+ + V + E+G + L Sbjct: 2 MAVKKKDSAGLAKHLGGNLCERRKQLGWTQEIVAERVGVDVETVSRIERGAHLPSLPTLD 61 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS 96 ++ L D+ +SE +IS Sbjct: 62 RLAVALRCSAG---DLLSKEGPAEASEAATFSAWIS 94 >gi|222530442|ref|YP_002574324.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457289|gb|ACM61551.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 143 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK+I R G+++ KL E G++ + + E+G+ + + L++I + L ++ Sbjct: 1 MNIGKKIAELREKYGLTRYKLSELSGVSQSALSEIERGIKQPTITTLENICKALNITLAD 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FF + P + ++ S N V+ +P ++L F++ Sbjct: 61 FFAEKEPEIPPEVKSLINTVVRL--SPTQIRLLDSFLK 96 >gi|210632695|ref|ZP_03297520.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] gi|210159405|gb|EEA90376.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] Length = 320 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R M+QE+L LG+T Q V K+E G + RL + E+ E + Sbjct: 17 YLRDARNMTQEQLAMLLGVTRQAVSKWESGASTPDMDRLVRLCEIFEVDLDDLIRGD 73 >gi|170016279|ref|YP_001723001.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169804961|gb|ACA83577.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 199 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 37/79 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I++ R ++QE+LG+ L +T Q + +E G + G + + IS + Sbjct: 1 MLIGVKIKMIREAFDLTQEQLGKELHLTRQTISSWENGKSYPGITDILSISNKYNVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + ++++ Sbjct: 61 LMKEDIELIGHFEAIDHSL 79 >gi|169335433|ref|ZP_02862626.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] gi|169258171|gb|EDS72137.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] Length = 275 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 39/75 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R ++Q++L + L IT + + K+E+G++ S L +S++L+ + Sbjct: 6 IGTFICSLRKEKNLTQKELADKLNITNKAISKWERGISCPDISLLIPLSDILDVTTNEIL 65 Query: 75 DVSPTVCSDISSEEN 89 + SDI+ + + Sbjct: 66 NGEREEISDINEDID 80 >gi|169334705|ref|ZP_02861898.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] gi|169257443|gb|EDS71409.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] Length = 125 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+GK+I+ R SQ L E + + Q + K E+G+++ L I+ L+ + Sbjct: 8 NLGKQIKKYRKQKKYSQSDLAEKIDKSVQHISKIERGISKASLQTLVDITNALDISMDEL 67 Query: 74 FDVSPTVCSD 83 ++S SD Sbjct: 68 LNMSVKKSSD 77 >gi|160944796|ref|ZP_02092023.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] gi|158443980|gb|EDP20984.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] Length = 120 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GKRIR R+ GM+QE+L +G+ + E G + L I L+ Sbjct: 7 IGKRIRTCRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSAD 63 >gi|145634268|ref|ZP_01789979.1| probable transcription regulator [Haemophilus influenzae PittAA] gi|145268712|gb|EDK08705.1| probable transcription regulator [Haemophilus influenzae PittAA] Length = 237 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 5/93 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +S+ + E LG++ +Q +E AS + ++E LE ++ Sbjct: 11 IGNRIRELREFKKVSRNAMAEKLGLSLSALQNWETNQTEPVASMIITLAEELEVSPNYLL 70 Query: 75 DVS-----PTVCSDISSEENNVMDFISTPDGLQ 102 + I+ E+ ++ +G + Sbjct: 71 TGETNATLDENSNRITLRESENSRSVADDEGFE 103 >gi|332298033|ref|YP_004439955.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181136|gb|AEE16824.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 331 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 ++I + R G SQE+L + + ++ Q V K+E G ++ +S + D Sbjct: 5 EKIEILRKRNGWSQEELADKVAVSRQSVSKWESGGAVPELDKILLLSTLFGVSTDTLLKD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDG 100 SS V+ +S P+ Sbjct: 65 DLSVSAEPASSAGEKVLRRVSLPEA 89 >gi|313889436|ref|ZP_07823084.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122268|gb|EFR45359.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN 20026] Length = 230 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R MSQE+LG +G+ + +E+G N L + ++ + + Sbjct: 1 MFAGEQLKAIRQKEKMSQEELGHQIGVNKMTISNWEQGKNSPNQKHLAKLVDIFQVSEDY 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|307131685|ref|YP_003883701.1| putative transcriptional regulator [Dickeya dadantii 3937] gi|306529214|gb|ADM99144.1| Putative transcriptional regulator [Dickeya dadantii 3937] Length = 85 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ ++QEKLG G+ + ++ YE G ++ + + VL+ P + Sbjct: 4 KRLKEARLHAKLTQEKLGVLAGLEEATAYSRLSHYENGTHKPTFELVCEFARVLDVPECY 63 Query: 73 FFDVSPTVCSDISS 86 F+ V D+ Sbjct: 64 FYIVDDQFAQDVLE 77 >gi|161018434|emb|CAK01992.1| transcriptional regulator (fragment) [Bartonella tribocorum CIP 105476] Length = 39 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 28/32 (87%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ 42 +D+ VGK+IRL+R +LGMSQ+ LG+ LG++FQ Sbjct: 8 IDLFVGKKIRLKRKMLGMSQKTLGDALGVSFQ 39 >gi|332686955|ref|YP_004456729.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] gi|332370964|dbj|BAK21920.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] Length = 236 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + +G+RI+ RR L +S + + E LG++ + +YEKG + ++ + L++I+ +L + + Sbjct: 1 MTIGERIKARRKELKLSADIVAEKLGVSRSTIFRYEKGDIEKLPTNILENIAIILHTSPA 60 Query: 72 FFF 74 + Sbjct: 61 YLM 63 >gi|331090843|ref|ZP_08339689.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399702|gb|EGG79364.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] Length = 179 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 35/76 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ ++QE+L + ++ + + E+ + S L I + L + + Sbjct: 1 MQIGQKLKGLRIAKNLTQEELADRAELSKGFISQLERDLTSPSISTLVDILQCLGTSLKD 60 Query: 73 FFDVSPTVCSDISSEE 88 FF +E+ Sbjct: 61 FFQEESDEQIVFGNED 76 >gi|319937786|ref|ZP_08012189.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319807221|gb|EFW03835.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 124 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++ R I GMSQE+L + +T Q V K+E + +L +SE+ E + Sbjct: 5 KQLIHLRNIRGMSQEELAALMDVTRQSVSKWETNQTYPDSEKLIRLSEIFEVSTDYLLKG 64 Query: 77 SPTVCSD 83 + T +D Sbjct: 65 TETEITD 71 >gi|313899841|ref|ZP_07833344.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312955456|gb|EFR37121.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 259 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + R GMSQE+L ++ Q + K+E G L+ +S L I Sbjct: 6 NLYRIRKEKGMSQEELAALCDVSRQAISKWENGTANPDMENLKTLSRSLRVSID 59 >gi|257877436|ref|ZP_05657089.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811602|gb|EEV40422.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] Length = 201 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R+ ++QE+LGE +T + + E+ ++ I EVL Sbjct: 20 MNMEIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTP 79 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 FF + EE++ + Sbjct: 80 EEFFREENAQHQVVYREEDSTL 101 >gi|168186759|ref|ZP_02621394.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum C str. Eklund] gi|169295309|gb|EDS77442.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum C str. Eklund] Length = 432 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR LGM+ + L IT Q+ E G + L++++E L I + Sbjct: 6 LGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAESLNISIEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I + N+ + + L L + Sbjct: 65 ESEETQAEKICAYYENICESHILNNQLSLAEQY 97 >gi|85859538|ref|YP_461740.1| Cro/CI family transcriptional regulator [Syntrophus aciditrophicus SB] gi|85722629|gb|ABC77572.1| transcriptional regulator, Cro/CI family [Syntrophus aciditrophicus SB] Length = 128 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 20 RLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ R G +QEKLGE LG I Q + E G + ++ + ++++ P+ F Sbjct: 67 RIYREAKGWTQEKLGELLGDIPRQHISNMEHGKRPISSNTARKLAKLFNVPMDRF 121 >gi|327472198|gb|EGF17635.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 168 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEEN 89 + SE+ Sbjct: 66 SDKPEIKPVLSEDE 79 >gi|291544390|emb|CBL17499.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 470 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R+ G+SQE+L + +G + + EKG + + I+E L+ +S Sbjct: 15 QKLTQARLEKGLSQEQLAKRIGTQRSNICRIEKGTQNLSLDLMIKIAEALDKDVS 69 >gi|169334175|ref|ZP_02861368.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis DSM 17244] gi|169258892|gb|EDS72858.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis DSM 17244] Length = 219 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK +++ +++ L R G++QE+L L ++ V K+E G L+ IS Sbjct: 12 KKSHLEIEVEFNEKLVLIRKEKGLTQEELASLLFVSRTAVSKWESGRGYPSIDSLKEISR 71 Query: 65 VLESPIS 71 V I Sbjct: 72 VFGVTID 78 >gi|182417693|ref|ZP_02949012.1| DNA-binding protein [Clostridium butyricum 5521] gi|237667491|ref|ZP_04527475.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378417|gb|EDT75948.1| DNA-binding protein [Clostridium butyricum 5521] gi|237655839|gb|EEP53395.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 183 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R +S + + E G++ + + E+G + S L IS L S F Sbjct: 8 IGNKLKNIRNSRNLSLDDVAELTGVSKAMLGQIERGKSNPTVSTLWKISTGLRVSFSSFI 67 Query: 75 DVSPTVCSDISSEE 88 D S I+ +E Sbjct: 68 DESKEELKVINIDE 81 >gi|163815521|ref|ZP_02206894.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] gi|158449158|gb|EDP26153.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] Length = 112 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FF 74 GKRI+ R L ++QE+L E GI+ V + E G + L I+ L + + F Sbjct: 7 GKRIKKIRKSLKLTQEQLAEKAGISAHFVYEIEHGQKTMSLYTLTDIALALGTSTDYILF 66 Query: 75 DVSPTVCSDI 84 +P + S Sbjct: 67 GRTPDISSGA 76 >gi|75761861|ref|ZP_00741789.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490644|gb|EAO53932.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 2/79 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R +SQ++L + L + + YE I+ L I + Sbjct: 2 VTLGDRIKFIRTKKNISQQELADILNVNRSAISLYETNRKSPSRENTYKIATALGVSIDY 61 Query: 73 F--FDVSPTVCSDISSEEN 89 P+ +D E Sbjct: 62 LLGLQTDPSFQTDNIHSET 80 >gi|307591326|ref|YP_003900125.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306986180|gb|ADN18059.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 86 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K I + + I G+ I+ RR L ++QE L G+ + E G + ++ Sbjct: 1 MSEQKPIVSSIQIKFGRAIQQRRKELNLTQENLAHRTGLDRTYIANIETGKINISLRNIE 60 Query: 61 HISEVLESPISFFF 74 +++ L +S F Sbjct: 61 KLAKGLSISLSDLF 74 >gi|242399365|ref|YP_002994789.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] gi|242265758|gb|ACS90440.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] Length = 65 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R + G++QE L + LG+T Q + EKG I++ + I F Sbjct: 3 NRLRELRELKGLTQEDLAKTLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFKVKIEDIF 60 >gi|37650510|emb|CAE47444.1| PlcR protein [Bacillus thuringiensis serovar tohokuensis] Length = 285 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|37518410|emb|CAE46775.1| hypothetical protein [Yersinia enterocolitica] Length = 122 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 10/108 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V KR+R R G+SQEKL + + I + ++ YE G S + I+ +L+ P Sbjct: 4 VPKRLREAREAAGISQEKLSQLIDIDGKNSRSRLSSYEVGRTEPPFSLVVKIARLLDYPE 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +F+ V + ++ N ++ P+ + +Y+ ++ K+R++ Sbjct: 64 YYFYTVDDDMAKNMLEVHRNRVN----PE--ENLQYYTLEENKKLRKQ 105 >gi|301300079|ref|ZP_07206297.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852311|gb|EFK79977.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 242 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 N+G RI+ RR L +S + + E LG++ V +YEKG + +V + L+ ++EVL++ ++ Sbjct: 3 NIGYRIKQRRKELKLSADVVAEKLGVSRSTVFRYEKGDIEKVPTTILEKLAEVLKTTPAY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 S + + D +++ Sbjct: 63 LIGWESENNSAYTKMLHESFDSLNS 87 >gi|296876651|ref|ZP_06900699.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] gi|296432153|gb|EFH17952.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] Length = 295 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R +GMSQE L E +G++ Q V K+E G + IS + I Sbjct: 5 EKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISID 59 >gi|260890727|ref|ZP_05901990.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260859605|gb|EEX74105.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 203 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R ++Q L E GI+ + KYE+G+N L+ +++ + I F + Sbjct: 14 LKELRKKKNLTQRGLAEKTGISLAMITKYEQGLNTPSIENLRVLADFFKVSIRNFLEED 72 >gi|260430250|ref|ZP_05784224.1| DNA-binding protein [Citreicella sp. SE45] gi|260418722|gb|EEX11978.1| DNA-binding protein [Citreicella sp. SE45] Length = 213 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R M+ L G++ + K E GV + + ++ L P+ Sbjct: 25 LEVAIGRQVRELRKRQRMTGGDLAGKTGLSVGMLSKIENGVISPSLNTMSALANALGVPL 84 Query: 71 SFFFDVSPTVCS 82 F Sbjct: 85 VQLFSGFEEPRG 96 >gi|260495101|ref|ZP_05815230.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|260197544|gb|EEW95062.1| transcriptional regulator [Fusobacterium sp. 3_1_33] Length = 184 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK++R R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + + +I + Sbjct: 61 LLEDEDDDIRNIEYIKKDSIKYIES 85 >gi|237743275|ref|ZP_04573756.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|256028631|ref|ZP_05442465.1| MerR family transcriptional regulator [Fusobacterium sp. D11] gi|289766549|ref|ZP_06525927.1| transcriptional regulator [Fusobacterium sp. D11] gi|229433054|gb|EEO43266.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|289718104|gb|EFD82116.1| transcriptional regulator [Fusobacterium sp. D11] Length = 184 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK++R R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + + +I + Sbjct: 61 LLEDEDDDIRNIEYIKKDSIKYIES 85 >gi|196048279|ref|ZP_03115456.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196021016|gb|EDX59746.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 184 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +IN+G++I + R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINIGEKIMVFRKGAGLTSKRLAELSDITPSMLSQIEKGITNPSLQTLKLISLALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + + F Sbjct: 63 NFFLEDTNTEELVVRANQRKKITF 86 >gi|110804331|ref|YP_687851.1| putative prophage repressor CI [Shigella flexneri 5 str. 8401] gi|291281104|ref|YP_003497922.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|300898212|ref|ZP_07116568.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|110613879|gb|ABF02546.1| putative prophage repressor CI [Shigella flexneri 5 str. 8401] gi|284920569|emb|CBG33631.1| putative prophage repressor [Escherichia coli 042] gi|290760977|gb|ADD54938.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|300358089|gb|EFJ73959.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|320654501|gb|EFX22535.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659998|gb|EFX27537.1| SOS-response transcriptional repressor [Escherichia coli O55:H7 str. USDA 5905] gi|324019900|gb|EGB89119.1| peptidase S24-like domain protein [Escherichia coli MS 117-3] Length = 210 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 73 FFDVSPTV 80 + + Sbjct: 60 LLNGTSDS 67 >gi|420538|pir||S32822 repressor protein cI - phage 434 gi|455364|gb|AAA72530.1| cI repressor [unidentified cloning vector] gi|224174|prf||1011238A cI gene Length = 210 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 73 FFDVSPTV 80 + + Sbjct: 60 LLNGTSDS 67 >gi|323483984|ref|ZP_08089357.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] gi|323402700|gb|EGA95025.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] Length = 183 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 17/115 (14%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+++ V K IR R +S ++L G++ + + E+G S L IS ++ Sbjct: 2 DPMNLIVAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL------NRYFIQIDDVKVRQ 117 P FD ++ N+ + T + L R + D + R+ Sbjct: 62 P----FDA-------LTVRPENLYQIVKTSEIQPLLEDNGKVRNYPVFPDDENRR 105 >gi|257879453|ref|ZP_05659106.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813681|gb|EEV42439.1| predicted protein [Enterococcus faecium 1,230,933] gi|295100939|emb|CBK98484.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 101 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKRI+ R G++QE+L E LG+ + + E G + + E+ + + F Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIF 97 >gi|302875482|ref|YP_003844115.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307689097|ref|ZP_07631543.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578339|gb|ADL52351.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 132 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R + G+S L I+ + E G + I+E L ++ Sbjct: 1 MNIGEKIKQYRNLAGLSIRVLAAKADISKSTLGDIENGKTNTSVKTITSIAEALNVDVNI 60 Query: 73 FFDVSPTVCSDISSEE----NNVMDFISTPDGLQLN 104 + T ++ + MD I GL LN Sbjct: 61 LMNAEATDDNETPLPKILDVKTAMDLILAQPGLMLN 96 >gi|213161102|ref|ZP_03346812.1| hypothetical protein Salmoneentericaenterica_14098 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428345|ref|ZP_03361095.1| hypothetical protein SentesTyphi_24034 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 265 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I+ R L ++Q +L +G + QQ+Q+ E G S Q I L+ P++ F Sbjct: 4 NNIKQLRTQLSITQHELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPLNVVFPE 63 Query: 77 SPTVCSDISSEE---NNVMDFISTPDGLQL 103 S + +D + + ++ I+T G+++ Sbjct: 64 SDRLINDFRKKRRKTDEDLEVIATS-GIEM 92 >gi|199597306|ref|ZP_03210737.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229551815|ref|ZP_04440540.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258507963|ref|YP_003170714.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|258539216|ref|YP_003173715.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|199591822|gb|EDY99897.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229314759|gb|EEN80732.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257147890|emb|CAR86863.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|257150892|emb|CAR89864.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|259649290|dbj|BAI41452.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 179 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +IR R+ ++QE+LGE ++ + + E + I VL + Sbjct: 1 MDIGSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQSSPSLETFFDILSVLGESPAD 60 Query: 73 FFDVSP 78 FF P Sbjct: 61 FFREEP 66 >gi|154151191|ref|YP_001404809.1| XRE family transcriptional regulator [Candidatus Methanoregula boonei 6A8] gi|153999743|gb|ABS56166.1| transcriptional regulator, XRE family [Methanoregula boonei 6A8] Length = 69 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +I++ R + ++QE L +G+T Q + EKG IS + I FF+ Sbjct: 3 NKIKVYRAMHDLTQEDLAGAIGVTRQTILAIEKGKYVPSLDLAFRISRYFKVNIEEIFFY 62 Query: 75 D 75 D Sbjct: 63 D 63 >gi|34496668|ref|NP_900883.1| hypothetical protein CV_1213 [Chromobacterium violaceum ATCC 12472] gi|34102523|gb|AAQ58888.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 115 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 16/119 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ + R LGM+QE L E LG+ + + + E+G + RL ++EVL + Sbjct: 9 LNQRIGQAVARHRKALGMNQEDLAEKLGVGLEAISRLERGRIKPTLVRLLELAEVLGCSV 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + D+ + + + ++ ++ RQ ++++V + Sbjct: 69 N---DLLSETSVNPGDQARYLEQLLA------------RLKQAD-RQLVVDMVEQLSDR 111 >gi|253580755|ref|ZP_04858019.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848126|gb|EES76092.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 220 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 37 KLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 96 Query: 72 FFFDVSPTVCSDISSE 87 + + +DI+ + Sbjct: 97 WLKGETDEYETDITDK 112 >gi|228902129|ref|ZP_04066293.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222] gi|228857555|gb|EEN02051.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222] Length = 262 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E L T Q V K+E G +L I +V E + + Sbjct: 1 MEFGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDY 60 Query: 73 FFDVSPTVCSD 83 + ++ Sbjct: 61 LLKETAEQSNE 71 >gi|228952477|ref|ZP_04114558.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807214|gb|EEM53752.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 114 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R +SQ++L E L + + YE I+ VL I + Sbjct: 2 VTLGERIKSIRTKKNISQKELAEALNVNRSAISLYETNRKSPSRENTYKIATVLGVSIDY 61 Query: 73 F 73 Sbjct: 62 L 62 >gi|229016335|ref|ZP_04173281.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] gi|229022576|ref|ZP_04179104.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228738725|gb|EEL89193.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228744982|gb|EEL95038.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] Length = 149 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIYVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + ++ + Sbjct: 65 DEELTQKVIADSKQLA 80 >gi|331678336|ref|ZP_08379011.1| repressor protein C2 [Escherichia coli H591] gi|331074796|gb|EGI46116.1| repressor protein C2 [Escherichia coli H591] Length = 210 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQRVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 73 FFDVSPTV 80 + + Sbjct: 60 LLNGTSDS 67 >gi|224541245|ref|ZP_03681784.1| hypothetical protein CATMIT_00405 [Catenibacterium mitsuokai DSM 15897] gi|224525890|gb|EEF94995.1| hypothetical protein CATMIT_00405 [Catenibacterium mitsuokai DSM 15897] Length = 281 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R +SQ +LG+ +G++ Q V K+E + ++ ++++ I Sbjct: 1 MTLGQTIKYYRTKFNLSQSELGDQIGVSRQAVTKWETDTGMPDINNIKSLAKLFHISIDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 V S S+ +D + Sbjct: 61 LLSSDHHVQSLHESKIEYDIDMLKD 85 >gi|219855544|ref|YP_002472666.1| hypothetical protein CKR_2201 [Clostridium kluyveri NBRC 12016] gi|219569268|dbj|BAH07252.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 375 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R G++QE+L + +G++ V K+E G++ L ++ + SP Sbjct: 13 IIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDELLGYSP 72 >gi|187933000|ref|YP_001885196.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|187721153|gb|ACD22374.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] Length = 179 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 39/81 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR+ RM ++QE+L ++ + + E + + L I E+L + ++ Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + S+++ D Sbjct: 61 FFSETKEEQVIFSNDDMFKTD 81 >gi|153955107|ref|YP_001395872.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347965|gb|EDK34501.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 372 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R G++QE+L + +G++ V K+E G++ L ++ + SP Sbjct: 10 IIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDELLGYSP 69 >gi|186471163|ref|YP_001862481.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197472|gb|ACC75435.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 189 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G RIR R G S L E G++ V K E+G + AS L ++ + Sbjct: 8 VDQRIGARIRAEREGRGWSLTSLAEKSGVSRAMVHKVERGESSPTASLLAKLAGAFGMSM 67 Query: 71 S 71 S Sbjct: 68 S 68 >gi|28379037|ref|NP_785929.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] gi|28271875|emb|CAD64780.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] Length = 188 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +I+ R +G+SQ +L E L +T Q + YEKG + L+++ + PIS+ Sbjct: 2 NKIKELRQYMGLSQAELAEKLNVTRQSISLYEKGQRVPRINVLKNMEAIFGVPISY 57 >gi|296506515|ref|YP_003667749.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|296327102|gb|ADH10029.1| transcriptional regulator [Bacillus thuringiensis BMB171] Length = 66 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ L MSQE L +G+ + + E G I++VL++PI F Sbjct: 6 RMKEYRVKLSMSQEDLANEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLF 62 >gi|302864813|ref|YP_003833450.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501098|ref|YP_004079985.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302567672|gb|ADL43874.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315407717|gb|ADU05834.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 187 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 6/107 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RIR R G+S +L G+ + E GV L I+ L P++ Sbjct: 13 REVGRRIRSLRTERGISLSELARLAGVGKATLSGLENGVRNPRLETLYAITAQLGVPLTA 72 Query: 73 FF---DVSPTVCSDISSEENNVMDFISTPDG-LQLNRYFIQIDDVKV 115 D +PT+ +++ S + +L R ++ ++ Sbjct: 73 VLATPDQAPTLRGAAVG--GTLLEVFSDREATYELYRMWVTPGPAQL 117 >gi|229002961|ref|ZP_04160828.1| transcriptional regulator [Bacillus mycoides Rock3-17] gi|228758312|gb|EEM07492.1| transcriptional regulator [Bacillus mycoides Rock3-17] Length = 119 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 36/80 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ RM LG +Q++ + + I+ V E G + IS + + Sbjct: 5 IGKRIKEIRMSLGYTQQQFADNVDISKPMVSYIESGKKTPSRETVSKISNLANVSTDYIM 64 Query: 75 DVSPTVCSDISSEENNVMDF 94 +S ++ SS + +++ Sbjct: 65 GLSDNKNNEESSASDVMLEL 84 >gi|229102450|ref|ZP_04233157.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] gi|228680935|gb|EEL35105.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] Length = 149 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD-------GLQLNRYFIQIDDVKV 115 + + I +E DF + GL + FI+ + ++V Sbjct: 61 LIKGNQSFKEKIHIDEEE-ADFEKENEFGFYIGFGLLIMSAFIEYEKIQV 109 >gi|227873617|ref|ZP_03991855.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840535|gb|EEJ50927.1| transcriptional regulator [Oribacterium sinus F0268] Length = 158 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ IR R G++Q + E +G++ + +YE G + + + I + + Sbjct: 2 IGENIRKLRHTQGLTQPEFAERIGVSRNSLSRYENGSSPISTDIIDRICQAFQVS 56 >gi|225572080|ref|ZP_03780944.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM 10507] gi|225040414|gb|EEG50660.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM 10507] Length = 192 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+IR R SQE L E + ++ Q + +E G + + L +SE E + Sbjct: 1 MELGKQIRRYRNERSFSQETLAEKVYVSRQTISNWENGKSYPDVNSLVLLSEAFEVSLDK 60 Query: 73 FFDVS-PTVCSDISSEENNVMDFIS 96 + I+ E+ + + +S Sbjct: 61 LIKGDVENMKEQINREDQQIFNCLS 85 >gi|85707435|ref|ZP_01038515.1| probable transcriptional regulator [Roseovarius sp. 217] gi|85668023|gb|EAQ22904.1| probable transcriptional regulator [Roseovarius sp. 217] Length = 373 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 6/103 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+RL R G+S + L E + ++ Q + KYE +S L + + L + F Sbjct: 17 GQRLRLARKRAGLSMQALAERVTPSVSAQAISKYEADKMMPSSSVLVGLGKALGVSLDFL 76 Query: 74 FDVSPTVCSDISSEENNVMD----FISTPDGLQLNRYFIQIDD 112 + +N+ ++ ++ ++ I+D Sbjct: 77 LGGQVEALESVEWRKNSTASAQDRAMAESIVIEKLEDYLAIED 119 >gi|330974040|gb|EGH74106.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 114 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 8/106 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R MSQ L E +G V +YE+G G +L I+ V Sbjct: 8 IGAKIKTLRKSTTMSQADLAELIGCDAPLVSRYERGTTLPGIEQLIRIATVFNVAPGELL 67 Query: 75 DVSPTVC--------SDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 DI+ V + L+L + ++D Sbjct: 68 PGGQDQLRTRLISLRQDITERIAEVDSPEHLEEILELINKYSCLND 113 >gi|325970042|ref|YP_004246233.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025280|gb|ADY12039.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 353 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R++ R+ G S + L +GI+ ++KYE G + ++ L ++ L +FF Sbjct: 4 ERLKRARVSSGFSMQNLATKVGISANMIKKYEHGESMPSSATLIRLAASLGLKSEYFF 61 >gi|260583710|ref|ZP_05851458.1| transcriptional regulator [Granulicatella elegans ATCC 700633] gi|260158336|gb|EEW93404.1| transcriptional regulator [Granulicatella elegans ATCC 700633] Length = 285 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 23/130 (17%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ RR+ L ++Q++L E + Q+ + E A L+ +S L + +FF Sbjct: 2 LGERLKHRRLELNLTQKELSEGI-CKQSQISRIENQNYDPSALILKKLSVRLNVSMDYFF 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR---SIVSSEK 131 + + + + F +I D + Q+ + S+ ++K Sbjct: 61 NTKLE-------------------ETDSVLKSFKKIADDALSQRDFSKLEYCLSLELNKK 101 Query: 132 KYRTIEEECM 141 + T+EE+ + Sbjct: 102 QKITLEEDLI 111 >gi|225569728|ref|ZP_03778753.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] gi|225161198|gb|EEG73817.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] Length = 114 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 7/88 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K ++ R +SQ++L + L T Q + KYE G++ L+++++ ++ I + Sbjct: 1 MNIVKNLKKLRTERNLSQQQLADMLHTTQQNIYKYENGISEPNLETLKNMADHFQTSIDY 60 Query: 73 FFD-------VSPTVCSDISSEENNVMD 93 + P D++S+E ++ Sbjct: 61 LVGYTSIRHKIEPVSEYDLNSDEQTLIQ 88 >gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] Length = 822 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ +R + ++Q++L + I+ + + EK + + ++ ++ L + Sbjct: 571 GDRLKKKRSEMSLTQKELADAANISQPFLSRIEKKSSEASSDNVRALATALGVTAGWLQY 630 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 S T + E+ N D I + LNR Sbjct: 631 GSDTEVRSETVEDENAGDVIYMTE--PLNR 658 >gi|170736644|ref|YP_001777904.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818832|gb|ACA93414.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 111 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R R+ G+SQE+LG GI +V +YE G + +++VL P SF Sbjct: 13 KRLREARLRSGLSQEQLGIEAGIDEFSASARVNQYETGKHAPKLQTAHRLAQVLHVPTSF 72 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 ++ + + + + D + Sbjct: 73 LYESNDLLARLLVAAAPLPQDSL 95 >gi|332363707|gb|EGJ41487.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 168 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEEN 89 + SE+ Sbjct: 66 SDKAELKPVLSEDE 79 >gi|325687772|gb|EGD29793.1| phage transcriptional repressor [Streptococcus sanguinis SK72] gi|327461118|gb|EGF07451.1| phage transcriptional repressor [Streptococcus sanguinis SK1057] Length = 242 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 7/91 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 GKR++ +R+ GM+Q ++ + + I +E G + L ++ +L ++F Sbjct: 17 GKRLKQKRIEKGMTQAEIADIIRINRSSYNSWESGRAKPNQKNLSALASILGVSDTYFES 76 Query: 74 -FDVSPTVCS----DISSEENNVMDFISTPD 99 +D+ + +N V D + + + Sbjct: 77 EYDIMNHYLQLNPMNQQKADNYVEDLLQSQE 107 >gi|300117865|ref|ZP_07055632.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1] gi|298724729|gb|EFI65404.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1] Length = 285 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|229829704|ref|ZP_04455773.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] gi|229791693|gb|EEP27807.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] Length = 141 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R +SQE+L E +G++ Q + KYE G + + + +++ I Sbjct: 9 ELRKYHDLSQEELAEKIGVSRQTLSKYETGESLPDIEKGKLLADAFGVSIDDLISYDKNK 68 Query: 81 CSDIS 85 ++ Sbjct: 69 EDNLG 73 >gi|220908478|ref|YP_002483789.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865089|gb|ACL45428.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 158 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQ 60 PNP D + + IR R+ LG+SQ+++ + GI Q + K E+G R+ + Sbjct: 4 SEQANAPNP-DETLAQYIRRIRLSLGLSQKEVADKAGIHLQSLGKIERGHTTRLNQKPKR 62 Query: 61 HISEVLESPISFF 73 ++ L PI + Sbjct: 63 GLAYALGLPIEYL 75 >gi|118444657|ref|YP_877308.1| DNA-binding protein [Clostridium novyi NT] gi|118135113|gb|ABK62157.1| DNA-binding protein, putative [Clostridium novyi NT] Length = 185 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 6/92 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R+ G++Q L ++ + + E+ + + L I E L + + Sbjct: 7 MNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKD 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF+ S E+ I + +LN Sbjct: 67 FFNNDEEEKIVFSKED------IFEAEDTELN 92 >gi|115379556|ref|ZP_01466646.1| transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] gi|310821728|ref|YP_003954086.1| XRE family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115363441|gb|EAU62586.1| transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] gi|309394800|gb|ADO72259.1| Transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] Length = 284 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 6/119 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK +R R+ G+S E+L + G++ + + E G + + L I+ L+ P S Sbjct: 104 VGKNLRRLRIQRGLSLERLSKASGVSRAMLGQIELGQSAPTINVLWKIARALDLPFSALI 163 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI-VSSEKK 132 S + + +++ DG +R D+ + R + EL S+ SE++ Sbjct: 164 SNSGGAGTRLMRAPQ--AKRLTSHDGRFTSRALFPFDEPR-RVEFYEL--SLKAHSEER 217 >gi|110680995|ref|YP_684002.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109457111|gb|ABG33316.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 229 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R G++ +L GI+ + K E G + LQ ++ L P+ Sbjct: 41 LEVAIGREVRGHRKQHGITVAELSALTGISIGMLSKIENGNTSPSLTTLQTLAHALSVPL 100 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + FF + + ++ +G Sbjct: 101 TSFFRRFEESRVAVHTRAGEGVEI--DREG 128 >gi|228998574|ref|ZP_04158161.1| hypothetical protein bmyco0003_31350 [Bacillus mycoides Rock3-17] gi|228761042|gb|EEM10001.1| hypothetical protein bmyco0003_31350 [Bacillus mycoides Rock3-17] Length = 143 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 6/89 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R + ++Q+ L + + T + YE G + L+ ++ +L + Sbjct: 3 ERLKEARKMRKLTQQGLADKVNATKGTISNYENGHSTPSNEMLKDLANILGVTTDYLLGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR 105 + E ++ D + R Sbjct: 63 DDELGPSNQLPE------LTKKDTRDIAR 85 >gi|224541161|ref|ZP_03681700.1| hypothetical protein CATMIT_00314 [Catenibacterium mitsuokai DSM 15897] gi|224525912|gb|EEF95017.1| hypothetical protein CATMIT_00314 [Catenibacterium mitsuokai DSM 15897] Length = 319 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 9/110 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L LG++ Q V K+E + R+ +SE+ + Sbjct: 6 KIIEERKKNGWSQEELASKLGVSRQAVSKWESSGSIPDLQRILQMSELFGVTTDYLLKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSI 126 E + +S + NRY D+K R +I+ S+ Sbjct: 66 IEEERQNEYVETKTIK-VSMEEA---NRYL----DMKSRGSRIVANATSL 107 >gi|118472940|ref|YP_888581.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118174227|gb|ABK75123.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 192 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 3/111 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD V +R+R R G++ E + I + + E G R+ L ++ L Sbjct: 8 HDVDALVRQRLRELRTERGLTLEDVASRAQIDVSTLSRLESGKRRLALDHLPRLATALSV 67 Query: 69 PISFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + ++ +N+ + T G + +I + R Sbjct: 68 TTDDLLRAPEAEDPRVRGTATTRDNITYWPLTRHGPANGLHAYKIRISEQR 118 >gi|300825209|ref|ZP_07105298.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|300522328|gb|EFK43397.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|323968639|gb|EGB64044.1| helix-turn-helix protein [Escherichia coli M863] Length = 216 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 6 LGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + VS T + + + + ++S + + Sbjct: 66 YGVSSTEPTLVQNNSGTQIPYLSWGEAI 93 >gi|295104278|emb|CBL01822.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 120 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GKRIR R+ GM+QE+L +G+ + E G + L I L+ Sbjct: 7 IGKRIRACRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSAD 63 >gi|238059861|ref|ZP_04604570.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881672|gb|EEP70500.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 74 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV K+ N IR R G M+Q +L + +G+T Q + E+G Sbjct: 1 MVKPTKVTNS--------IRALRFANGEMTQAELADRVGVTRQTIIAIEQGRYSPSLEVA 52 Query: 60 QHISEVLESPISFFFDVSPTVC 81 I+ V P+ F+ + Sbjct: 53 FQIARVFNVPLDDVFEYPSSEE 74 >gi|257064537|ref|YP_003144209.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792190|gb|ACV22860.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 149 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R G++Q++L L +T Q V ++E G ++ ++ L P+ ++ Sbjct: 9 QLRSDRGLTQQELANKLYVTRQAVSRWETGETTPNVDMIKLLAVTLGVPVGVLLEMPEHF 68 Query: 81 CS 82 C Sbjct: 69 CQ 70 >gi|188587862|ref|YP_001920327.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498143|gb|ACD51279.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 179 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 39/81 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR+ RM ++QE+L ++ + + E + + L I E+L + ++ Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + S+++ D Sbjct: 61 FFSETKEEQVIFSNDDMFKTD 81 >gi|330960406|gb|EGH60666.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 189 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +V + +R R +SQ L + G++ + + E G V + L ++E L+ Sbjct: 10 PVLQHVSQNVRRLRNAADLSQTALADKSGVSRRMLVAIEAGEKNVSLATLDRVAEALDVA 69 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 S +P E + + L R + Sbjct: 70 FSDLIQ-APDSRDHSRINELAWEGTCAGSKAVLLARAIAR 108 >gi|325479315|gb|EGC82411.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 177 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G +Q+ L +G++ + + E G+++ L+ I++VL ++ Sbjct: 4 ENIKRLRKEKGFTQKDLAVKVGVSITFISQIENGISKPSDENLKKIADVLGVTVN 58 >gi|256545793|ref|ZP_05473149.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] gi|256398489|gb|EEU12110.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] Length = 144 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ + RIR R +SQ KL + +G+ + + YE I +VL+ Sbjct: 77 DMEVEIENRIREFRKEKNLSQHKLAKLVGLKRRSIMAYENNTISPSLETAYKICKVLDKD 136 Query: 70 ISFFF 74 I F Sbjct: 137 IKEVF 141 >gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 188 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 1/92 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P+ + IR R G+S +L + GI + + E G L Sbjct: 1 MAEGRPTA-PLLAQIAASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGNPSVETLW 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVM 92 ++ L P S D I + E + Sbjct: 60 ALAVALGVPFSRLVDPPRPRVRVIRAGEGPAV 91 >gi|225405507|ref|ZP_03760696.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] gi|225042960|gb|EEG53206.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] Length = 398 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 8/104 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I R G++QE+L +G++ V K+E G + L I+ I Sbjct: 1 MNIGATIVNLRREKGVTQEQLARAVGVSKPAVSKWETGQSCPDIQLLAPIARYFGVTIDA 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFI 108 + T+ + + + I +G Q L R + Sbjct: 61 LLSFTRTLSREEADRLAKEVPGIFEQEGFQAGMERCASLVREYP 104 >gi|118480383|ref|YP_897534.1| transcription activator PlcR [Bacillus thuringiensis str. Al Hakam] gi|196045523|ref|ZP_03112754.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB108] gi|225867332|ref|YP_002752710.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB102] gi|229187576|ref|ZP_04314716.1| hypothetical protein bcere0004_51090 [Bacillus cereus BGSC 6E1] gi|118419608|gb|ABK88027.1| transcription activator PlcR [Bacillus thuringiensis str. Al Hakam] gi|196023730|gb|EDX62406.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB108] gi|225786453|gb|ACO26670.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB102] gi|228595943|gb|EEK53623.1| hypothetical protein bcere0004_51090 [Bacillus cereus BGSC 6E1] Length = 285 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|330683978|gb|EGG95740.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 179 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MEIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + EE + D Sbjct: 61 FFKETEQQKVIYKKEEQIIYD 81 >gi|315658589|ref|ZP_07911460.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|315496378|gb|EFU84702.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 179 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ RM+ ++QE+L E +T + + E +I EVL + S Sbjct: 1 MDIGMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF ++E+ + D Sbjct: 61 FFQEKTKEKVLYTAEDQTIYD 81 >gi|332655107|ref|ZP_08420848.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332515967|gb|EGJ45576.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 316 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G++Q++L + L ++ Q V K+E+G+N + L+ +S+ L +S Sbjct: 15 GALIGQARREKGLTQKELAQALHVSPQAVSKWERGLNFPDLALLEALSDQLGLTVSELLS 74 Query: 76 VSPTVCSD 83 +P Sbjct: 75 GTPGEPPQ 82 >gi|304413958|ref|ZP_07395375.1| putative prophage repressor CI [Candidatus Regiella insecticola LSR1] gi|304283678|gb|EFL92073.1| putative prophage repressor CI [Candidatus Regiella insecticola LSR1] Length = 215 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R+R RR LG++Q+ L + + + Q +++ E G + L ++ L + + Sbjct: 1 MSIADRVRSRRTELGLTQKDLAKRVDTSQQAIEQLENGKTK-RPRYLPELANALNCQLYW 59 Query: 73 FFDVSPT 79 + Sbjct: 60 LLNGGEH 66 >gi|296284192|ref|ZP_06862190.1| hypothetical protein CbatJ_11236 [Citromicrobium bathyomarinum JL354] Length = 230 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 52/119 (43%), Gaps = 17/119 (14%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++++L R + ++QE L + G++ + ++K E G +R L+ I+ ++ ++ F Sbjct: 10 YIAEQVKLIRKMFSLTQENLADAAGLSSRTIEKIESGRHRPEIQTLRSIARAVQFDVNVF 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQKIIELVRSIVSSE 130 SP S ++ R F + + + + + + + ++ + + Sbjct: 70 AKPSPEEEERQKS---------------EMLRAFRKTVVAPINPVRTVNDFLHALEARD 113 >gi|289551090|ref|YP_003471994.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis HKU09-01] gi|289180622|gb|ADC87867.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis HKU09-01] Length = 179 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ RM+ ++QE+L E +T + + E +I EVL + S Sbjct: 1 MDIGMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF ++E+ + D Sbjct: 61 FFQEKTKEKVLYTAEDQTIYD 81 >gi|271961986|ref|YP_003336182.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505161|gb|ACZ83439.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 189 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 1 MVGNKKIPNPV-DI---NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M + P P DI +VG+RIR R G+S +L G+ + E G Sbjct: 7 MDSGTQSPRPARDIGTPDVGQRIRRLREERGISLSELARRAGVGKATLSGLENGTRNPTL 66 Query: 57 SRLQHISEVLESPIS 71 L ++ L P++ Sbjct: 67 ETLWAVTAQLGVPLA 81 >gi|111020517|ref|YP_703489.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820047|gb|ABG95331.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 206 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 7/93 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R ++ + L GIT + K E+ + L I L P+ F Sbjct: 18 IGPRLKAARQAQRLTLDDLAASCGITKGYLSKIERDHASASVATLVRICAALNIPVGSLF 77 Query: 75 DVSPTVC-------SDISSEENNVMDFISTPDG 100 + S IS + +F+ TP G Sbjct: 78 ESSAAGEVVRADNYPPISFGGERMAEFLLTPFG 110 >gi|328944742|gb|EGG38903.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 168 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEEN 89 + SE+ Sbjct: 66 SDKPKIKPVLSEDE 79 >gi|268610412|ref|ZP_06144139.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 252 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R GMSQE+L E + +T Q V ++E G + L+ +S++ + I+ Sbjct: 7 ILELRNKKGMSQEQLAEKVFVTRQAVSRWETGETQPNTETLKLLSQLFDVSIN 59 >gi|239760526|gb|ACS15169.1| hypothetical protein [Campylobacter fetus subsp. venerealis NCTC 10354] gi|299469437|emb|CBH51838.1| hypothetical protein [Campylobacter fetus subsp. fetus] Length = 229 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G ++R R G++Q + G+ +GI+ +V YE + + I+E I +F Sbjct: 7 GDKLRKLRNAYGLTQSEFGDKIGISRVRVNSYENNITPLPMQVKYKIAEATGINIEYFDN 66 Query: 74 -FDVSPTVCSDISSEENNVMDFISTPDGL 101 D++ + S EN + + + + Sbjct: 67 DIDLATAISKYGISSENGKLQIKTNKETI 95 >gi|254390836|ref|ZP_05006047.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326444447|ref|ZP_08219181.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704534|gb|EDY50346.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 199 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + I +D VG R+R R G+S + E GI+ + + E G R L Sbjct: 1 MKQSPAISQVLD-EVGPRLRWLRTQRGVSLTAIAEATGISKSTLSRLESGQRRPSLELLL 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNV 91 I++ + P+ I + +V Sbjct: 60 PIAQAHQVPLDELVGAPEVGDPRIRTSPRSV 90 >gi|52143615|ref|YP_083215.1| transcriptional regulator [Bacillus cereus E33L] gi|51977084|gb|AAU18634.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 146 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++++ R G+SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGISQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLD 59 >gi|331086629|ref|ZP_08335706.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409795|gb|EGG89230.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 193 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R+ G++Q++L E L ++ + + K+E S ++ +++ L ++ F Sbjct: 6 GNTIRTLRIKHGITQKELAEKLNVSDKTISKWETEKGLPDISIVEELAKALHVSLTELFT 65 Query: 76 VSPTVCSDISS 86 ++S Sbjct: 66 GDLKTNENVSG 76 >gi|196036534|ref|ZP_03103929.1| putative transcriptional regulator PlcR [Bacillus cereus W] gi|228949071|ref|ZP_04111343.1| hypothetical protein bthur0007_51920 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195990867|gb|EDX54840.1| putative transcriptional regulator PlcR [Bacillus cereus W] gi|228810644|gb|EEM56993.1| hypothetical protein bthur0007_51920 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 285 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|241207203|ref|YP_002978299.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861093|gb|ACS58760.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 188 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R ++ + L G++ + + E+ AS L I L +S FF Sbjct: 9 IGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 +E V P+ Sbjct: 69 AEDGQASPLARRQEQQV---WRDPET 91 >gi|134300420|ref|YP_001113916.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053120|gb|ABO51091.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 71 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 19 IRLRR--MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R + ++Q L + +GI Q+ + E+GV + + IS+VL+ P+ F + Sbjct: 5 IREARTNRLFKITQNDLAKAVGIHPSQMSQIERGVYKPSLTLALKISKVLKVPLDDLFKL 64 Query: 77 SPT 79 P Sbjct: 65 EPE 67 >gi|134298619|ref|YP_001112115.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051319|gb|ABO49290.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 69 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R L ++QE+L + LG++ Q V E G I+++ I FD Sbjct: 3 NRLRELRNELNITQEQLADKLGVSRQTVISIENGKYNPSLILAYKIAKIFAISIEEAFDF 62 Query: 77 SPTVCSD 83 S + Sbjct: 63 SEVGMDE 69 >gi|223933601|ref|ZP_03625581.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|302024367|ref|ZP_07249578.1| DNA-binding protein [Streptococcus suis 05HAS68] gi|330833364|ref|YP_004402189.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223897727|gb|EEF64108.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329307587|gb|AEB82003.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 62 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R++LG+SQ L + +G++ Q V E ++++ L++ ++ F Sbjct: 2 NRVKDYRLLLGISQLDLAKAIGVSRQTVNMIENNKYNPSLDLCINLAKALQTDLNSLF 59 >gi|332655055|ref|ZP_08420796.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515915|gb|EGJ45524.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 101 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKRI+ R G++QE+L E LG+ + + E G + + E+ + + F Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIF 97 >gi|227513202|ref|ZP_03943251.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227083583|gb|EEI18895.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 132 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 30/76 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ G R++ R ++QE+LG+ + ++ + YEK + L ++ Sbjct: 2 IHLDFGTRLKQLRTEHKLTQEELGKKINVSKASISLYEKNLREPSKDSLVTLANFFNVST 61 Query: 71 SFFFDVSPTVCSDISS 86 + + S Sbjct: 62 DYLLGNTIDRNGHTPS 77 >gi|260589804|ref|ZP_05855717.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] gi|260539845|gb|EEX20414.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] Length = 336 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L E +G++ Q + K+E + +R+ +SEV + Sbjct: 6 KIVNLRKRAGWSQEELAEKMGVSRQSISKWEGAQSVPDMNRILKLSEVFCVSTDYLLRDD 65 Query: 78 PTVCSDISSEENNVMDFISTP-DGL 101 I + + + L Sbjct: 66 IEEVPCIVNPLEEAEPLEDSKGETL 90 >gi|221194780|ref|ZP_03567837.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221185684|gb|EEE18074.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 364 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L L ++ Q V K+E ++ +SE+ + Sbjct: 1 MLLSEKIMSLRKRNGWSQEELARQLNVSRQSVSKWESMAAMPDIQKIMAMSELFGVSTDY 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPD 99 ++ + S + + +TP+ Sbjct: 61 LLKDEMEDLPATATSLDSAELSSESATPE 89 >gi|126737472|ref|ZP_01753207.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126722057|gb|EBA18760.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 193 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M KK P+ +G R+R R ++ ++L G++ + + E+ L Sbjct: 1 MDDQKKRETQPI---IGARMRELRKAKHLTLKQLAAETGLSIGYLSQLERQDADPSIRAL 57 Query: 60 QHISEVLESPISFFFDVSPTVCSDISS 86 I + L I++FF + Sbjct: 58 NVIGKALGVGINWFFPGPEDQEGPEAG 84 >gi|91780942|ref|YP_556149.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia xenovorans LB400] gi|91693602|gb|ABE36799.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia xenovorans LB400] Length = 323 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 4/99 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PV + +RIR R GM++++L G++ + + E G V S LQ +S L Sbjct: 19 ASDPVLSELARRIRTLRAQRGMTRKQLALQSGVSIPHLARIESGEGNVSVSLLQKLSVAL 78 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 PI + +D++ ++ F+ +L R Sbjct: 79 NLPIQDLLADGSSQNADLT----MLIQFLKQQTPAELAR 113 >gi|330808460|ref|YP_004352922.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376568|gb|AEA67918.1| Putative transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 104 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R + G++Q +LGE G + + ++E G L ++ VL+ + FF Sbjct: 6 LGPAIRRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLANVLDVQLKAFF 65 Query: 75 DVSPTVCSDIS 85 + Sbjct: 66 ADMGDEDEQRA 76 >gi|323693691|ref|ZP_08107890.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum WAL-14673] gi|323502305|gb|EGB18168.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum WAL-14673] Length = 112 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G+ +++ R M+QE + E +G++ Q V K+E G + S L ++++ + Sbjct: 47 KSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGISV 104 >gi|282882924|ref|ZP_06291529.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300814135|ref|ZP_07094418.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297335|gb|EFA89826.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300511792|gb|EFK39009.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 179 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+L +T + + E+ + L I E L + S Sbjct: 1 MEIGNKIKELRVASGLTQEELATRSELTKGFISQIERDLTSPSVDSLLDILEALGTSPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 FF S I E++ ++ Sbjct: 61 FF--SKDKNERIIFSEDDYFEY 80 >gi|167771744|ref|ZP_02443797.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] gi|167666384|gb|EDS10514.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] Length = 132 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R ++Q +L E L IT Q V K+E G S LQ + + L ++ F Sbjct: 6 IGAFIAQCRKEKSLTQIQLAELLDITNQAVSKWENGRGMPDVSLLQPLCDALGISLNELF 65 Query: 75 DVSPTVCSD-ISSEENNVMDFISTPDGLQL--NRYFIQI-DDVKVRQKIIELV 123 + E N+ L +Y I +V + +IEL Sbjct: 66 SGEHISAEEYKGKAEENISKLYKEKQIANLKPIKYLFSICSNVTLLVAVIELA 118 >gi|186473005|ref|YP_001860347.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195337|gb|ACC73301.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 199 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +DI+ + +R+R R G+S E L E G++ + E+ + A+ L ++ L Sbjct: 2 DFMDIHSLIARRVRELRDGHGLSLEALAERSGVSRSNISLIERARSSPTAAVLDKLATAL 61 Query: 67 ESPISFFFDVS-PTVCSDISSEENNVMDFISTPD 99 ++ F+ P+ + + P+ Sbjct: 62 GVTLASLFEAPAPSAQTPSPLSRAATQAVWTDPE 95 >gi|329915926|ref|ZP_08276315.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] gi|327544831|gb|EGF30214.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] Length = 355 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G+S ++G +G+T V+KYE ++ L ++ L +FF Sbjct: 2 IGRRLSRARKAAGLSLREVGAQIGLTHASVKKYEDEQATPTSATLIKLARALNVRTEYFF 61 >gi|312961080|ref|ZP_07775585.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] gi|311284738|gb|EFQ63314.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] Length = 113 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+ I R ++QE++ E LGI + + + E+GV + +L ++++ + Sbjct: 5 HPTQAQIGRMIAKHRTERNLTQEEVAERLGIGSEAISRLERGVVELSVVKLMQLADIFDC 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + S +D ++ + D R F I+ V + + Sbjct: 65 RMDELLTESSNRPNDQGQMIAGLLSGLKESD-----RAF-----------ILATVEQLAA 108 Query: 129 S 129 Sbjct: 109 H 109 >gi|295106679|emb|CBL04222.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae 7-10-1-b] Length = 76 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + DI +G RI+ R G+SQE+ +G++ + E G V A L+ I++ L Sbjct: 2 HDYDIRSKIGLRIKELRAERGVSQEEFANLIGMSRSYFGEVETGKRNVAAVNLEKIAKGL 61 Query: 67 ESPISFFFDVS 77 ++ FFD Sbjct: 62 GVSLAEFFDSE 72 >gi|283479895|emb|CAY75811.1| putative HTH-type transcriptional regulatory protein Memar_2347 [Erwinia pyrifoliae DSM 12163] gi|283479904|emb|CAY75820.1| putative HTH-type transcriptional regulatory protein Memar_2347 [Erwinia pyrifoliae DSM 12163] Length = 142 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI R ++Q +L E LGI Q + YE G +V A+ L ++++L + Sbjct: 34 KQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGGKLKVSAALLPQLAQILNLSLD 92 >gi|222147111|ref|YP_002548068.1| transcriptional regulatory protein [Agrobacterium vitis S4] gi|221734101|gb|ACM35064.1| transcriptional regulatory protein [Agrobacterium vitis S4] Length = 194 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 3/102 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + P+ + + + R++ R G++ ++L + G++ + + E+ A+ L + Sbjct: 2 ENTPDTLTLAIAARLKAIRTARGLTLDQLADLSGVSRAMISRIERAEASPTATLLARLCS 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 L +S FF + + V P+ L R Sbjct: 62 ALGQSLSIFFAEPNHGSPLMRHADQPV---WQDPETGYLRRA 100 >gi|84499416|ref|ZP_00997704.1| transcriptional regulator, putative [Oceanicola batsensis HTCC2597] gi|84392560|gb|EAQ04771.1| transcriptional regulator, putative [Oceanicola batsensis HTCC2597] Length = 442 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR ++ M Q L +GI+ + E R+G L I+ VL Sbjct: 7 IGSRIRERRTMVAMRQADLARKVGISASYLNLIEHNRRRIGGKLLLDIAAVLGVEPVHLS 66 Query: 75 DVSPTVCSDISSEEN 89 + + E + Sbjct: 67 EGAEAALVATLREAS 81 >gi|149203543|ref|ZP_01880513.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143376|gb|EDM31415.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 190 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +R R G++ L E LG + + + E+ ++ S L+ ++EVL P+S Sbjct: 10 RSLGADLRALRKARGLTLAALAEMLGRSVGWLSQVERDLSEPSISDLRQVAEVLGVPMSL 69 Query: 73 FFDVSPTVCSD 83 F + + Sbjct: 70 LFGHASAPAEE 80 >gi|147677406|ref|YP_001211621.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146273503|dbj|BAF59252.1| hypothetical transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 255 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R G++Q +L G+T + + E+G + L+ I+EV+ +F Sbjct: 139 LGCKLRALREEYGLTQAQLASMAGVTAGLIGQIEQGKVQPSLKTLEKIAEVMGVTPCYFI 198 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 S V +S V D + P Sbjct: 199 MESGAVDQMLSVMNPEVRDLLMHP 222 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +IR+ R MS ++L + GI+ + + E+G + L+ I+ L P + Sbjct: 74 LGDKIRMLRAEKNMSLQELAQASGISLSYLSEIERGTVYPALTTLKRIAAGLSVPPA 130 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G++IR R G + + L ++ + + E+G R + ++ L Sbjct: 5 GEQIRALREERGYTLQDLARRTNLSLSYLSEIERGSKRPSLKTIDKLAAALNV 57 >gi|24112291|ref|NP_706801.1| transcriptional repressor DicA [Shigella flexneri 2a str. 301] gi|24051146|gb|AAN42508.1| similar to DicA, regulator of DicB encoded by prophage [Shigella flexneri 2a str. 301] gi|281600240|gb|ADA73224.1| putative regulator [Shigella flexneri 2002017] gi|313650353|gb|EFS14762.1| HTH-type transcriptional regulator dicA [Shigella flexneri 2a str. 2457T] gi|320175554|gb|EFW50649.1| transcriptional repressor DicA [Shigella dysenteriae CDC 74-1112] gi|320187224|gb|EFW61923.1| transcriptional repressor DicA [Shigella flexneri CDC 796-83] gi|323175040|gb|EFZ60654.1| HTH-type transcriptional regulator dicA [Escherichia coli LT-68] Length = 135 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 3/110 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ Sbjct: 7 GARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLF 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +N I T D +L + F + + + ++ ++ +R+ Sbjct: 67 GDEDKQPGEPIPDNQPA--ILTEDQKELLQLFDALPESE-QKALLSEMRA 113 >gi|84515360|ref|ZP_01002722.1| transcriptional regulator, XRE family [Loktanella vestfoldensis SKA53] gi|84510643|gb|EAQ07098.1| transcriptional regulator, XRE family [Loktanella vestfoldensis SKA53] Length = 130 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 17/126 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+SQ+ L + LG+ F + +E A+RLQ ++ +L + + Sbjct: 17 GDRLAGAREAAGLSQKDLAKSLGVKFATLVSWENDTGEPRANRLQMLAGMLGVSLGWLM- 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS---IVSSEKK 132 T D + ++ + + L ++R+ ++V++ + EK+ Sbjct: 76 ---TGLGDGLAAPDDATEIPANVAVLM----------QEMRRLRAQMVQTLDKMGQVEKQ 122 Query: 133 YRTIEE 138 +T Sbjct: 123 LQTALR 128 >gi|324997834|ref|ZP_08118946.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 187 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 32/86 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R G+S L GI + + E G S L ++ L P+S Sbjct: 10 VGERLRSARTAHGLSVGALAARAGIGKGSLSELENGSRNPTLSTLYALANTLGLPVSHLL 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 + +++ + +G Sbjct: 70 AETVGAEVGAPGIGTRLLETRTDDEG 95 >gi|310830110|ref|YP_003962467.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308741844|gb|ADO39504.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 110 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R+ ++Q +L E + IT + E+G + L ISE LE P+S Sbjct: 6 IGRHIREARLDKKLTQYQLAERVHITPNYLSMLERGTHLPKLETLITISEALEVPVSALL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP-DGLQ 102 P + + F+ST +GL Sbjct: 66 TDFPVESF------TSRIHFLSTAMEGLD 88 >gi|228907545|ref|ZP_04071402.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] gi|228852037|gb|EEM96834.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] Length = 146 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLD 59 >gi|148258862|ref|YP_001243447.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411035|gb|ABQ39541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 112 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 34/70 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ R + G+SQ + + LG+ + + E G RV A L ++E + +++ Sbjct: 1 MQIAERLKEARKLAGLSQSHVAKMLGLHRPSISEMEAGNRRVSADELARLAETYDVSVAW 60 Query: 73 FFDVSPTVCS 82 +P Sbjct: 61 LLGEAPETLD 70 >gi|86138085|ref|ZP_01056660.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85825112|gb|EAQ45312.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 221 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R ++ L E G++ + K E GV + LQ +++ L P+ Sbjct: 33 LEVAIGRQVRELRKRQRLTGANLAELTGLSVGMLSKIENGVISPSLNTLQVLADALRVPL 92 Query: 71 SFFFDVSPTVCS 82 F Sbjct: 93 MQLFSGFEEARG 104 >gi|325695326|gb|EGD37226.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332365308|gb|EGJ43071.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 168 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEEN 89 + + SE+ Sbjct: 66 SNKPEIKPVLSEDE 79 >gi|325689190|gb|EGD31197.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 168 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEEN 89 + SE+ Sbjct: 66 SDKPEIKPVLSEDE 79 >gi|331650420|ref|ZP_08351492.1| Helix-turn-helix-containing protein [Escherichia coli M605] gi|331040814|gb|EGI12972.1| Helix-turn-helix-containing protein [Escherichia coli M605] Length = 265 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I+ R L ++Q +L +G + QQ+Q+ E G Q I L+ P++ F Sbjct: 4 NNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLGLAQAICNALDKPLNVVFPE 63 Query: 77 SPTVCSDISSEE---NNVMDFISTPDGLQL 103 S + +D + + ++ I+T G+++ Sbjct: 64 SDRLINDFRKKRRKTDEDLEAIATS-GIEM 92 >gi|262283651|ref|ZP_06061416.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260708|gb|EEY79409.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 167 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEEN 89 + SE+ Sbjct: 66 SDKPEIKPVLSEDE 79 >gi|300024625|ref|YP_003757236.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526446|gb|ADJ24915.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 217 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +G ++R R G++ +L I+ + K E G S LQ ++ L Sbjct: 30 HTLEQAIGHQVRHHRKQAGLTVAELAVAAQISPGMLSKIENGQISPSLSTLQMLAAALNV 89 Query: 69 PISFFF 74 P++ F Sbjct: 90 PLTVLF 95 >gi|227485105|ref|ZP_03915421.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236938|gb|EEI86953.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 67 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ + RIR R +G+SQ L + +G+ + + YE I +V + I Sbjct: 1 MDVLIENRIREFRKEMGLSQNALAKMVGLKRRSIMAYESNTISPTLETAYKICKVFDKDI 60 Query: 71 SFFF 74 F Sbjct: 61 KEVF 64 >gi|297190678|ref|ZP_06908076.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719901|gb|EDY63809.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 202 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G++ L G++ + + E G R L ++ + + P+ Sbjct: 13 VGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARIYDVPLDDL 71 >gi|187778278|ref|ZP_02994751.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] gi|187771903|gb|EDU35705.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] Length = 180 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ R ++QE+LG+ +G+T V YE + L I++ F Sbjct: 34 ILLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIADFFCVSTDF 93 Query: 73 FFDVSPTVCSDISSE 87 + + + S Sbjct: 94 LLNTEEKLDMALDSA 108 >gi|118617359|ref|YP_905691.1| transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118569469|gb|ABL04220.1| transcriptional regulator [Mycobacterium ulcerans Agy99] Length = 180 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E+L + G+T + K E+G + + ++ L+ + F Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDES 64 Query: 79 TVCSDISSEENN 90 + + ++ Sbjct: 65 AHETITADRAHD 76 >gi|298250743|ref|ZP_06974547.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297548747|gb|EFH82614.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 850 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G R+R R+ L +SQE L E L I+ + ++++E+G AS +S Sbjct: 1 MHFGNRLRQERLRLHLSQEALAEALAISARSIRRWEQGQALPQASVRLQLSRFFGLRSEA 60 Query: 73 FFDVSPTVCSD 83 F+ T Sbjct: 61 LFEDEETQTPH 71 >gi|257141046|ref|ZP_05589308.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 193 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 12/131 (9%) Query: 1 MVGNKKIPNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + + P + V G +IR R L + ++ GI+ + + E+G+ + Sbjct: 1 MVPSTENTRPANAGVALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITS 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFI 108 L I+ L + +F + S ++ F + P+G QL + Sbjct: 61 LAGIAHALGVTVQYFVETPSEERSVCRGDQLRFFSFADSANLFARLTNVPEGRQLEAILV 120 Query: 109 QIDDVKVRQKI 119 ++ + R ++ Sbjct: 121 RMPPGQKRSEV 131 >gi|327463455|gb|EGF09774.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 167 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + + Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLEE 65 Query: 76 VSPTVCSDISSEEN 89 + SE+ Sbjct: 66 SDKPEIKPVLSEDE 79 >gi|237736543|ref|ZP_04567024.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420405|gb|EEO35452.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 183 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 4 IGERIKKSRNDRGLSLRELATKVELSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLI 63 Query: 75 DVSPTVCS 82 + + Sbjct: 64 EDEEEKQN 71 >gi|223982789|ref|ZP_03633015.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM 12042] gi|223965236|gb|EEF69522.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM 12042] Length = 87 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 35/59 (59%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RIR+ R ++QE+L E +G++ Q + E ++G +++ I++ L+ + Sbjct: 7 VLLGRRIRILRKYRKLTQEQLAEVVGLSIQHLSNAENARTKLGFPKIKSIADTLDVSLD 65 >gi|114769447|ref|ZP_01447073.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] gi|114550364|gb|EAU53245.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] Length = 206 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R M+ L G++ + K E G + LQ +++ L PI+ F Sbjct: 22 IGREVKSHRRQRSMTVADLAASTGLSIGMLSKIENGNTSASLNTLQTLADALMIPITSLF 81 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 E + + + +G++L R + Sbjct: 82 RGY---------ESSRTAEHTKSGEGVELERAGTR 107 >gi|323350704|ref|ZP_08086365.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322123124|gb|EFX94815.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 169 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 7 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 66 Query: 76 VSPTVCSDISSEEN 89 + + SE+ Sbjct: 67 SNKPEIKPVLSEDE 80 >gi|311071151|ref|YP_003976074.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] gi|310871668|gb|ADP35143.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] Length = 127 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 3/92 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G +++ R G++Q++L E L ++ + ++EK + L I+ + I F Sbjct: 1 MSFGHKLKTLRKQRGLTQKELAEKLFLSQSSITRFEKDEILPTSETLSKIANYFDVSIDF 60 Query: 73 FFDVSPTVC---SDISSEENNVMDFISTPDGL 101 D S++ N ++ + + L Sbjct: 61 LLDRPQPPQKKNSNLEKAFNEAIEELKDEETL 92 >gi|264680621|ref|YP_003280531.1| hypothetical protein CtCNB1_4489 [Comamonas testosteroni CNB-2] gi|262211137|gb|ACY35235.1| hypothetical protein CtCNB1_4489 [Comamonas testosteroni CNB-2] Length = 104 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISF 72 ++G+RIR RR LG+SQ +L + +T + + E G R + L ++ L++ Sbjct: 3 HLGERIRARRQALGLSQGRLAQMADVTASAISQIESGAIRTLKNDTLARLAIALQTTALE 62 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + S+E ++D Sbjct: 63 LMAGLHSETASLPSDEQRLLD 83 >gi|212710082|ref|ZP_03318210.1| hypothetical protein PROVALCAL_01135 [Providencia alcalifaciens DSM 30120] gi|212687289|gb|EEB46817.1| hypothetical protein PROVALCAL_01135 [Providencia alcalifaciens DSM 30120] Length = 111 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 36/70 (51%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ + +GK ++ R+ G+S E + + LGI+ QQ+ +YE+G N + L Sbjct: 3 KEKLYYISQLIGKCMQEYRIEKGVSGECVAKKLGISQQQLSRYERGENALTVDVLFKYLL 62 Query: 65 VLESPISFFF 74 ++E F+ Sbjct: 63 IIEVNFPDFY 72 >gi|170699135|ref|ZP_02890189.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170135930|gb|EDT04204.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 108 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 12/110 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGA 56 M G+ IP+ +R++ R+ G++QE+LG GI +V +YEKG + Sbjct: 1 MPGDTTIPS----VFSQRLKQARLRSGLTQEQLGIQAGIDEFSASARVNQYEKGKHTPTV 56 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISS----EENNVMDFISTPDGLQ 102 Q ++ L P SF ++ + S ++ + +++ + L Sbjct: 57 QTSQRLARALLVPTSFLYEEDDLLASLLAIAGRLSKEKKRALVASAEALA 106 >gi|326388769|ref|ZP_08210357.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206743|gb|EGD57572.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 243 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P ++ +G R+R R +S L G++ + K E G + + ++ L Sbjct: 49 PRALEKALGARVRQLRRQQDLSVADLAGAAGLSTGMLSKIENGQISASLTSIHSLALALN 108 Query: 68 SPISFFFDVSPT 79 PIS F ++ Sbjct: 109 VPISSLFALAEE 120 >gi|317494934|ref|ZP_07953343.1| hypothetical protein HMPREF0864_04113 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917076|gb|EFV38426.1| hypothetical protein HMPREF0864_04113 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 120 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 10/106 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R R G+SQEKL + + I + ++ YE G S + I+ +L+ P + Sbjct: 4 KRLREAREAAGISQEKLSQLIDIDGKNSRSRLSSYEVGRTEPPFSLVVKIARLLDYPEYY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 F+ V + ++ N ++ P+ + +Y+ ++ K+R++ Sbjct: 64 FYTVDDDMAKNMLEVHRNRVN----PE--ENLQYYTLEENKKLRKQ 103 >gi|310829543|ref|YP_003961900.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium limosum KIST612] gi|308741277|gb|ADO38937.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium limosum KIST612] Length = 380 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 RI R G+SQ+ L +G+T Q V K+E G L ++ E + Sbjct: 7 RIGTLRKQKGISQKMLAGAIGVTPQSVSKWETGAALPDIGLLPALATFFEVSVD 60 >gi|303241951|ref|ZP_07328444.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590506|gb|EFL60261.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 103 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 4/95 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D +GKRI+ R G+S KL GI+ + + E + A L I + L Sbjct: 2 NNID--LGKRIKELRKQSGLSTTKLSNLTGISSGYISELENNLKSPSAEILLKIIDALNI 59 Query: 69 PI-SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + SFF++ S E +S+ + L+ Sbjct: 60 TVASFFYEFPSEPLSSDLKELVTAAKDLSS-ENLE 93 >gi|301056818|ref|YP_003795029.1| transcriptional activator [Bacillus anthracis CI] gi|300378987|gb|ADK07891.1| transcriptional activator [Bacillus cereus biovar anthracis str. CI] Length = 289 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|295705479|ref|YP_003598554.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803138|gb|ADF40204.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 181 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R G+S +L + IT + + E+G+ S L+ +++ L+ P Sbjct: 3 NIDIGKKVEKFRKEKGLSSRELAKLADITPSMLSQIERGLANPSISTLKLLAKSLDVPTF 62 Query: 72 FF 73 F Sbjct: 63 SF 64 >gi|291543870|emb|CBL16979.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 194 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G IR R+ GM+Q L E LG++ + V K+E+G S L +S+ LE Sbjct: 7 GSLIRRLRLEQGMTQLALAERLGVSDKAVSKWERGCGAPDLSILPLLSQALEVD 60 >gi|283851802|ref|ZP_06369079.1| transcriptional regulator, XRE family [Desulfovibrio sp. FW1012B] gi|283572718|gb|EFC20701.1| transcriptional regulator, XRE family [Desulfovibrio sp. FW1012B] Length = 186 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + G S E L E G++ QV +YE G + S L +++ ++ Sbjct: 9 REIAMRLRGIREVTGFSAEALAEATGVSPAQVLQYETGETEIPVSYLYEVAKACGVDLTA 68 Query: 73 FFDVSPT 79 Sbjct: 69 LLTGDEA 75 >gi|227519556|ref|ZP_03949605.1| phage-like protein [Enterococcus faecalis TX0104] gi|257090840|ref|ZP_05585201.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|312902475|ref|ZP_07761681.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227073005|gb|EEI10968.1| phage-like protein [Enterococcus faecalis TX0104] gi|256999652|gb|EEU86172.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|310634145|gb|EFQ17428.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579716|gb|EFU91907.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 184 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 16/112 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ +R+ M+Q + GI+ + E G N +L I++ L + + Sbjct: 9 VGTRMKQKRLEKKMTQVDVATKSGISSKYYGSIENGKNSPSIEKLSAIAKALGCSLHYL- 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +D + N + + +L F +I K + LV + Sbjct: 68 ------LNDRMEDTENRVAV----ETKRLQEIFNKIPRDK-----LSLVEGL 104 >gi|225378376|ref|ZP_03755597.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans DSM 16841] gi|225209813|gb|EEG92167.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans DSM 16841] Length = 118 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI++RR L + Q +L E L I+ + E G + I L + Sbjct: 6 KEMGTRIKVRRKELKIKQAELAEALEISNNHMSSTENGRQKPSLDTFIGICRCLNVTPDY 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + +I + ++ + + D ++L + FI++ Sbjct: 66 LL-LGTMHAYNIPQDISDKLRLCNQSD-IELAKDFIEL 101 >gi|153812180|ref|ZP_01964848.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] gi|149831835|gb|EDM86921.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] Length = 208 Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD + +G ++ R G+ QE+L E L ++ + V ++E G N S L I++ + Sbjct: 8 VDQVKIGNFLKKLRKEKGIIQEQLAEILNVSGRTVSRWETGNNMPDISILVDIADYYDIS 67 Query: 70 I 70 I Sbjct: 68 I 68 >gi|312831462|emb|CBY17644.1| putative transcription factor [Sinorhizobium meliloti] Length = 198 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE-S 68 +D + ++ R G+S+ L LG++ +YE+G R+ RL H+ E++ Sbjct: 73 MDEKISAWLKQTREAKGISRADLAHLLGLSVSVYGRYERGSEARLSIPRLIHLCEIMGFM 132 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 P+ FD++P + E + L L + Q+ +R +I L+R + Sbjct: 133 PLDVIFDIAPHLWGKTLQEAEDR---------LTLTKLVEQLPQDTMRD-LIRLLRRMTP 182 Query: 129 SEK 131 E+ Sbjct: 183 GEQ 185 >gi|269126718|ref|YP_003300088.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311676|gb|ACY98050.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 478 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 7 IPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + VD + G+R+R R GM+ LG +G Q+ E G S L+ ++ Sbjct: 1 MSSDVDLVTFGQRLRHLRRARGMTLADLGAKVGRAPSQLSLLENGRREPKLSLLKSLAAA 60 Query: 66 LESPI 70 LE P+ Sbjct: 61 LEVPV 65 >gi|261366132|ref|ZP_05979015.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282572066|gb|EFB77601.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 116 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+ +R R M+QE + E LG++ Q V K+E G + + L ++ + P Sbjct: 51 RTLGEVLRQHRTDCRMTQEFVAESLGVSRQAVSKWESGKSDPSTTNLMALARLYGLPP 108 >gi|254474485|ref|ZP_05087871.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] gi|214028728|gb|EEB69563.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] Length = 204 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K I P VG IR RR L M+ + L + G++ + + E+ L Sbjct: 1 MPQEKTIQEP---KVGPTIRKRRKQLNMTLQALCDASGVSVGYLSQVERDNATPSLGTLA 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 I+ LE + +F S + + Sbjct: 58 QIAAALEVGLDYFISASKPSDGLTRAGSRPLFAL 91 >gi|315650501|ref|ZP_07903570.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315487239|gb|EFU77552.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 79 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R LG+SQ +LG+ +G++ + + E G I+ L + FD+ Sbjct: 5 IERYRKPLGLSQHRLGKKVGVSRIAINRIETGKVTPSLRLANDIANALGVCLYDIFDLDD 64 Query: 79 T 79 T Sbjct: 65 T 65 >gi|255531894|ref|YP_003092266.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344878|gb|ACU04204.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 107 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DIN+ +++R R G +Q + L I+ K E + RL+ ++ +L+ + Sbjct: 6 DINISQKLRALRKNRGWTQSDMAAQLDISVPAYSKIECAQTELTLGRLKLLATILKVKVC 65 Query: 72 FFFDVSPTVCSDISSE 87 + D + + E Sbjct: 66 WLLDEEEAMLHQENEE 81 >gi|226322751|ref|ZP_03798269.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] gi|225208912|gb|EEG91266.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] Length = 313 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R ++QE+L E ++ + V ++E G+N S L ++E + I Sbjct: 6 IGAFLKQCRKEKNLTQEQLAEKFEVSARTVSRWETGINMPDLSILVQLAEYYDVEIRELL 65 Query: 75 DVSPTVCSDISSEEN 89 D + + +E Sbjct: 66 DGERSQTMNKEMKET 80 >gi|172034932|ref|YP_001801433.1| hypothetical protein cce_0015 [Cyanothece sp. ATCC 51142] gi|171696386|gb|ACB49367.1| unknown [Cyanothece sp. ATCC 51142] Length = 361 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 8/115 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + G++++ R+I +SQE+L E + + + E+G ++ Sbjct: 1 MPSKLSMKDEILRQFGQKLQKWRLIQNLSQEQLAEIINVDRTYISLLERGKRNPSLICIK 60 Query: 61 HISEVLESPISFFF------DVSPTVCSDISSEENNVMDFISTPDGLQLNR--YF 107 ++E L ++ + C + + N+ D ++ P + + R F Sbjct: 61 SLAEALNINLNELILIPEWQENLQNFCHKYNIDMENLADVLNDPKVIPMIRGKAF 115 >gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] Length = 208 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ G++Q +L + LGIT + V +E G ++ +++ ++ + ++ ++ Sbjct: 8 RLKRIRLDSGLTQAELADKLGITNRAVGAWESGRSKPRLDKMKELAVLFDTTVADLMGED 67 Query: 78 PTVCSDISSEE-------NNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + ++ DF + I D R Sbjct: 68 AAEAAISGTSRMVPLLGFAHMGDFEDEGNLADEVEVPASIADAHPR 113 >gi|229514886|ref|ZP_04404346.1| hypothetical protein VCB_002537 [Vibrio cholerae TMA 21] gi|229521557|ref|ZP_04410976.1| hypothetical protein VIF_002094 [Vibrio cholerae TM 11079-80] gi|229525929|ref|ZP_04415334.1| hypothetical protein VCA_003576 [Vibrio cholerae bv. albensis VL426] gi|297579049|ref|ZP_06940977.1| fumarate reductase flavoprotein subunit [Vibrio cholerae RC385] gi|229339510|gb|EEO04527.1| hypothetical protein VCA_003576 [Vibrio cholerae bv. albensis VL426] gi|229341655|gb|EEO06658.1| hypothetical protein VIF_002094 [Vibrio cholerae TM 11079-80] gi|229347591|gb|EEO12550.1| hypothetical protein VCB_002537 [Vibrio cholerae TMA 21] gi|297536643|gb|EFH75476.1| fumarate reductase flavoprotein subunit [Vibrio cholerae RC385] Length = 151 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+ Q ++ E +G+T Q K+E G N AS ++ ++E+L+ + Sbjct: 9 LKEMREKAGLKQSEVAEYVGVTPQTYMKWENGKNEPKASNIKKLAEILKVS------ETE 62 Query: 79 TVCSDISSEENNVMDFI 95 + +E+N ++F+ Sbjct: 63 LCRGERFHKEDNPIEFM 79 >gi|332522147|ref|ZP_08398399.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332313411|gb|EGJ26396.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 138 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 38/86 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ SQ+ L + L I+ Q + K+E G + L ++E+ + + Sbjct: 6 EQLKNYRLKKNYSQDALADRLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQLVRG 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 S + ++ D ++ +G + Sbjct: 66 KELASSHNNENDSEEDDNLNLLEGRE 91 >gi|315167306|gb|EFU11323.1| peptidase S24-like domain protein [Enterococcus faecalis TX1341] Length = 273 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLES 68 +NVG+R++LRR L +S +K+ LG++ + +YEKG + ++ RL I+++L++ Sbjct: 32 MNVGERMKLRRKELNISADKIANELGVSRSTIFRYEKGDIEKLPTERLITIAKILKT 88 >gi|296269837|ref|YP_003652469.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092624|gb|ADG88576.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 490 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 4/142 (2%) Query: 3 GNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + +D+ G+R++ R G++ L E +G Q+ E G S L+ Sbjct: 8 EQLSLTHELDLLAFGQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENGKREPKLSLLKS 67 Query: 62 ISEVLESPISFFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++ L P+ + E D + GL + ++ + +V + I Sbjct: 68 LATALNVPVEELLRRQAPNRRAQLEIALEEAQRDPLYMRLGLSKLKVSARVPN-EVLEHI 126 Query: 120 IELVRSIVSSEKKYRTIEEECM 141 + L + + + + EE Sbjct: 127 LALYGELKARQARGTATPEEAR 148 >gi|291543170|emb|CBL16280.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 164 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I R G++QEKLGE +G+T + + +E G LQ +++ I+ Sbjct: 4 IKIGKFIATLRRQSGLTQEKLGEKIGVTNKTISPWENGNYMPDIEMLQLLAKEFNVSINE 63 Query: 73 FFDVSPTVCSDISSEENN 90 + + Sbjct: 64 LLAGQKMSDEEFRKNADE 81 >gi|257062849|ref|YP_003142521.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790502|gb|ACV21172.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 459 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +R+ R G+SQE+L LG++ Q V K+E+ + L ++++ + Sbjct: 1 MNYEVAERLAELRRAKGLSQEELAHELGLSRQAVSKWERAESSPDTDNLIALAKLYGMTL 60 Query: 71 SFFFDVSPTVCSDISS 86 S Sbjct: 61 DELVHGPAEAVGHADS 76 >gi|291287342|ref|YP_003504158.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884502|gb|ADD68202.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 178 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L M+ E + + G T + + E G N + L+ I L + IS F+ Sbjct: 4 GIKLREIRKKLSMTLEDISQKTGFTKSFISQIENGKNSPSIASLKKICYALGTTISELFE 63 Query: 76 VSPTVCSDISSEENNV-------MDFISTP 98 + + SS + V M F+++ Sbjct: 64 DERNIVNIFSSPDFKVFKNKSISMSFLASK 93 >gi|149020301|ref|ZP_01835193.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP23-BS72] gi|147930603|gb|EDK81585.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP23-BS72] Length = 198 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 17/113 (15%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS----- 71 R++ R +SQ+++ E LG + + Q+ E G +++ + Q +++ ++ Sbjct: 2 NRLKELRQEKKLSQKEIAETLGFSLRSFQRMENGESQIKPEKAQLLADYFGVSVANLLGY 61 Query: 72 --FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F + + S+E F R + ++ R+ ++ L Sbjct: 62 ENNFIESVKNLSQKDGSDEVFFKAF----------RAYYELKTADGRENLLTL 104 >gi|330976223|gb|EGH76285.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 193 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 2/107 (1%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + P PV +V + +R R +SQ L E G++ + + E G V + L + Sbjct: 8 ENSQRP-PVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRV 66 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +E LE S +E + + L R + Sbjct: 67 AEALEVAFSDLIQAPENHDYSRINELAWAGTIAGSK-AVLLARAVAR 112 >gi|323142572|ref|ZP_08077388.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413005|gb|EFY03908.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 125 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +G+RIR R+ G SQ LG +G + + E G +V + L ++ VLE Sbjct: 10 IDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLAFVLEKN 69 Query: 70 ISFFFDVSPTVCSD 83 +F +P D Sbjct: 70 FDYFLLDTPYAKCD 83 >gi|319744460|gb|EFV96817.1| phage transcriptional repressor [Streptococcus agalactiae ATCC 13813] Length = 230 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G ++ RM SQ +L L I K+E G + L ++ +L+ P ++F Sbjct: 4 GSNLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVPTTYF 61 >gi|295700971|ref|YP_003608864.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440184|gb|ADG19353.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 190 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 7/121 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR R L + ++ GI+ + + E+G S L I++ L + +F + Sbjct: 15 GSKIRALRKRLQRTLDETATAAGISKPFLSQVERGHATPSISSLAGIAQALGVTMQYFVE 74 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSEKKYR 134 S ++E F + F ++ + V +++ LVR Sbjct: 75 TPTEAKSVRRADERQYFSFADS------ANQFARLTNAAVGRQLDAILVRMPAGQPPSEV 128 Query: 135 T 135 T Sbjct: 129 T 129 >gi|256422517|ref|YP_003123170.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037425|gb|ACU60969.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 97 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I+ R ++Q++L E +GIT + E GV + L+ I+ L S ++F Sbjct: 1 MNIGKAIQTLRTKKNITQKELAEKIGITQTGLSYIETGVKHPSENSLEKIANALGSSVAF 60 Query: 73 F----FDVSPTVCSDISSEENNVM-DFIST 97 D+ V D +E + + DF++T Sbjct: 61 IKLASLDLDKDVPQDKRAEFDELFPDFVAT 90 >gi|226310713|ref|YP_002770607.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226093661|dbj|BAH42103.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 203 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R+R R G++QE+L E + T + YE + L+ +++VL+ + Sbjct: 57 LSQRLRTARKTKGLTQEELAEHVCTTKGTISNYENNHSTPPNDMLRQLADVLDVTTDWL 115 >gi|226325758|ref|ZP_03801276.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] gi|225205882|gb|EEG88236.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] Length = 319 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 10/101 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +++ R G++QE+L E L ++ + + ++E G N S L ++E + Sbjct: 6 IGEFLKVLRKERGLTQEQLAEILLVSGRTISRWETGTNMPDLSILIKMAEFYNVEVKEIL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D E+ + + L + +++ +V Sbjct: 66 DGE-------RKSESMDKEL---KETLSKVADYNKLEKERV 96 >gi|20808446|ref|NP_623617.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517063|gb|AAM25221.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 127 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V +G+R+ R G ++E+ LGI+ +Q+ +YEKG ++ L+ ++ + Sbjct: 1 MKEEVYREIGRRLWELRRQRGFTREQAARYLGISQKQLARYEKGREKISTDVLERLAGLY 60 Query: 67 ESPISFFFDVSPTVCSDIS 85 + D + + I+ Sbjct: 61 GCDYKYLLDDNESSSEQIA 79 >gi|332655408|ref|ZP_08421147.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515703|gb|EGJ45314.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 166 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+RI+ R G++QE+L + +G++ V+ YE G+ + + + + + Sbjct: 2 GQRIQELRKDAGLTQEQLAQRIGVSMAAVRNYENGLREPNSKAMAALERFFKVSGEYL 59 >gi|253681413|ref|ZP_04862210.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253561125|gb|EES90577.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 179 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ G++Q L ++ + + E+ + + L I E L + + Sbjct: 1 MKIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKD 60 Query: 73 FFDVSPTV-----CSDISSEENNVMDF 94 FF+ DI E+N +++ Sbjct: 61 FFNNDEEEKIVFSKEDIFESEDNELNY 87 >gi|229513255|ref|ZP_04402720.1| hypothetical protein VCB_000900 [Vibrio cholerae TMA 21] gi|229513261|ref|ZP_04402726.1| hypothetical protein VCB_000906 [Vibrio cholerae TMA 21] gi|229349665|gb|EEO14620.1| hypothetical protein VCB_000900 [Vibrio cholerae TMA 21] gi|229349671|gb|EEO14626.1| hypothetical protein VCB_000906 [Vibrio cholerae TMA 21] Length = 171 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 39/59 (66%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + +++++G+ ++ RR+ LG+ QE + E +G+T Q + K+EK AS++ +S++L Sbjct: 2 DYLNMSIGETLKNRRIELGIKQETIAEEMGVTVQTIYKWEKDTTEPKASQVSKLSKILR 60 >gi|326692328|ref|ZP_08229333.1| hypothetical protein LargK3_00985 [Leuconostoc argentinum KCTC 3773] Length = 241 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+L R G++Q L + L I++Q V +E+ ++ A L I E P F Sbjct: 1 MTIGHQIKLLRQSKGLTQRDLADTLYISYQAVSNWERHQSQPTADMLLAILEKYHLPHDF 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|295101270|emb|CBK98815.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 109 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 21/119 (17%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I +G I++ R G +Q+ L E LG+T + E+G + + LQ + +L Sbjct: 6 DINIEIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGV- 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSI 126 +EE + L L R +I D + RQ++ EL+ +I Sbjct: 65 --------SADRIIFGTEEPE-------AEALALAR---RISDIKPEYRQQVQELLSAI 105 >gi|120401814|ref|YP_951643.1| hypothetical protein Mvan_0799 [Mycobacterium vanbaalenii PYR-1] gi|119954632|gb|ABM11637.1| protein of unknown function DUF955 [Mycobacterium vanbaalenii PYR-1] Length = 475 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 14/105 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG RIR R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGARIRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRY 106 T D+ + V D + + L R Sbjct: 65 ASQDDTRLIAELREVLMDRDLDVDVDPAEVADMVGSH--PALARA 107 >gi|111019118|ref|YP_702090.1| DNA binding protein [Rhodococcus jostii RHA1] gi|110818648|gb|ABG93932.1| possible DNA binding protein [Rhodococcus jostii RHA1] Length = 470 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 F------------DVSPTVCSDISSEENNVMDFISTPDGLQ 102 +V+ I ++ + + +++ GL Sbjct: 65 SSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHPGLA 105 >gi|41410057|ref|NP_962893.1| hypothetical protein MAP3959c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398890|gb|AAS06509.1| hypothetical protein MAP_3959c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 506 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 18/131 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 37 FVGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 96 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI + V + +S G L R + + R+ I Sbjct: 97 SSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHPG--LARAVVNL----HRRYRIT 150 Query: 122 LVRSIVSSEKK 132 + ++E++ Sbjct: 151 TAQLAAATEER 161 >gi|288924207|ref|ZP_06418242.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288344443|gb|EFC78937.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 208 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 V + IRL R G+S +L G+ Q + K E+ L I+ L P++ Sbjct: 16 VARNIRLLRQQRGLSLAELARQAGLAKQTLSKLEQSSGNPTVDTLFSIASALGVPVT 72 >gi|237741587|ref|ZP_04572068.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|237744995|ref|ZP_04575476.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|256026806|ref|ZP_05440640.1| MerR family transcriptional regulator [Fusobacterium sp. D11] gi|260494772|ref|ZP_05814902.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|289764802|ref|ZP_06524180.1| transcriptional regulator [Fusobacterium sp. D11] gi|294785805|ref|ZP_06751093.1| DNA-binding protein [Fusobacterium sp. 3_1_27] gi|229429235|gb|EEO39447.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|229432224|gb|EEO42436.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|260197934|gb|EEW95451.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|289716357|gb|EFD80369.1| transcriptional regulator [Fusobacterium sp. D11] gi|294487519|gb|EFG34881.1| DNA-binding protein [Fusobacterium sp. 3_1_27] Length = 185 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG I+ R + + + GI+ + + EKG + ++ I++VLE P+ Sbjct: 5 INVGITIKNIRKAKKLLLKDVALKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFK 64 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 FF S + + + IST Sbjct: 65 FFIDSEKENYEFHLLKKDDRKIIST 89 >gi|168213632|ref|ZP_02639257.1| putative DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170714789|gb|EDT26971.1| putative DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 290 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G I+ R +G++Q++LGE + + ++KYE G + S L + ++ + Sbjct: 6 LGNNIKKYRNQIGLTQKELGEKILKSEISIRKYESGKINIPPSTLFELCKIFNVTLG 62 >gi|167957582|ref|ZP_02544656.1| UDP-N-acetylglucosamine transferase [candidate division TM7 single-cell isolate TM7c] Length = 508 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G I+ R++ G +Q +L E L + + + EKG + + I EVL PI Sbjct: 10 IGNLIQENRIMRGWTQAQLAEALDTSQSAINRIEKGGQNISLEMIARIGEVLARPI 65 >gi|70729282|ref|YP_259019.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68343581|gb|AAY91187.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 104 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q +LGE G + + ++E G L ++EVL + FF Sbjct: 6 LGAAIKRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLAEVLGVKLKAFF 65 Query: 75 DVSPTVCSDIS 85 + Sbjct: 66 ADLGDEEEQRA 76 >gi|66046479|ref|YP_236320.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63257186|gb|AAY38282.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 189 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 33/134 (24%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + P PV +V + +R R +SQ L E G++ + + E G V + L + Sbjct: 4 ENSQRP-PVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRV 62 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD------VKVR 116 +E LE S D I P+ NR + +I++ + Sbjct: 63 AEALEVAFS---------------------DLIQAPE----NRDYSRINELAWAGTIAGS 97 Query: 117 QKIIELVRSIVSSE 130 + ++ L R++ E Sbjct: 98 KAVL-LARAVARRE 110 >gi|257879449|ref|ZP_05659102.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813677|gb|EEV42435.1| predicted protein [Enterococcus faecium 1,230,933] Length = 133 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +G+RIR R+ G SQ LG +G + + E G +V + L ++ VLE Sbjct: 18 IDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLAFVLEKN 77 Query: 70 ISFFFDVSPTVCSD 83 +F +P D Sbjct: 78 FDYFLLDTPYAKCD 91 >gi|255029672|ref|ZP_05301623.1| DNA-binding protein [Listeria monocytogenes LO28] Length = 68 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R ++Q++L +G T + KYE +R L ++E+L + F D Sbjct: 7 GEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLLD 66 Query: 76 V 76 Sbjct: 67 D 67 >gi|308233625|ref|ZP_07664362.1| DNA-binding protein [Atopobium vaginae DSM 15829] gi|328944523|ref|ZP_08241984.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] gi|327490924|gb|EGF22702.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] Length = 328 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 17/110 (15%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L + LG++ Q V K+E + R+ +S + Sbjct: 6 KILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDLLVKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 V + + N ++ VR ++I+L + Sbjct: 66 IDVMGNNVDADENACQ-----------------EEAGVRMRVIKLEEATA 98 >gi|226361258|ref|YP_002779036.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226239743|dbj|BAH50091.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 470 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 F------------DVSPTVCSDISSEENNVMDFISTPDGLQ 102 +V+ I ++ + + +++ GL Sbjct: 65 SSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHPGLA 105 >gi|291326763|ref|ZP_06125781.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313014|gb|EFE53467.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 87 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 37/71 (52%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV + + +G +R R+ G+S +LG + ++ QQV +YE G+N++ +L Sbjct: 1 MVMHIAKKKNIYALLGNHLRKARVSKGLSGNELGSIIHLSQQQVSRYELGINKLSLDKLI 60 Query: 61 HISEVLESPIS 71 I L+ I+ Sbjct: 61 EIVIFLDIDIN 71 >gi|113867425|ref|YP_725914.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha H16] gi|113526201|emb|CAJ92546.1| shikimate kinase containing a XRE-type HTH DNA-binding domain [Ralstonia eutropha H16] Length = 313 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 42/97 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+RIR R GMS++ L G++ + + E G L+ ++ L+ Sbjct: 32 DPYLTLLGERIRSLRASRGMSRKDLARGAGVSERYLANLETGTGNASVLLLRQVARALDV 91 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P+ + + ++E ++ +++ L R Sbjct: 92 PLPVVLAEVDGLNGEQATEFAQMVQWLAQLPAGDLAR 128 >gi|84501262|ref|ZP_00999467.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] gi|84390553|gb|EAQ03041.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] Length = 213 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R G++ + + + G+ + K E+G+ R ++ L ++ F Sbjct: 23 LGQRIRQLREARGLTLQTIADRSGLAISTISKIERGLMAPTYDRFSGLARGLGVDVTHLF 82 Query: 75 DVSPTVCSDISSEENNVMDF 94 + +F Sbjct: 83 SPGGRRFEAGTVALARAGEF 102 >gi|326204709|ref|ZP_08194564.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325985080|gb|EGD45921.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 179 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R+ G++QE+L ++ + + E+ + + L I E L + I Sbjct: 1 MNIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLIDILESLGTNIKD 60 Query: 73 FFDVS 77 FF+ S Sbjct: 61 FFNES 65 >gi|317494137|ref|ZP_07952553.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917910|gb|EFV39253.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 265 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I+ R L ++Q +L +G + QQ+Q+ E G Q I L+ P++ F Sbjct: 4 NNIKQLRTQLSITQRELAYMVGTSQQQIQRIETGKVAAKLGLAQTICNALDKPLNIVFPE 63 Query: 77 SPTVCSDISSEENNVMDFIST 97 S + +D + + + T Sbjct: 64 SDQLINDFHKKRRKTDEDLET 84 >gi|255019083|ref|ZP_05291209.1| transcription regulator, putative [Listeria monocytogenes FSL F2-515] Length = 81 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPT 79 FFD Sbjct: 61 FFDEEEH 67 >gi|229814963|ref|ZP_04445301.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] gi|229809450|gb|EEP45214.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] Length = 217 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR++R LGMSQ+ L + ++ Q + +E G + +++EV + Sbjct: 6 IGTGIRIQRERLGMSQQDLAQACMVSRQTISNWETGKTLPDIQSMAYLAEVFGVTVDDLV 65 Query: 75 D-VSPTVCSDISSEENNVM 92 + V+P + +S ++ ++ Sbjct: 66 NQVAPELGKRVSVDKRELL 84 >gi|169336953|ref|ZP_02620338.2| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169296221|gb|EDS78354.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 185 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 6/92 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R+ G++Q L ++ + + E+ + + L I E L + + Sbjct: 7 MNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQVERDLTSPSIATLVDILECLGTNLKD 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF+ S E+ I + +LN Sbjct: 67 FFNNDEEEKIVFSKED------IFESEDTELN 92 >gi|169334227|ref|ZP_02861420.1| hypothetical protein ANASTE_00625 [Anaerofustis stercorihominis DSM 17244] gi|169258944|gb|EDS72910.1| hypothetical protein ANASTE_00625 [Anaerofustis stercorihominis DSM 17244] Length = 194 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I +G I+ R+ M+Q+++G+ L ++ + + K+E G S L +SEVL++ I Sbjct: 3 NIKIGNLIKTLRIKKDMTQKEIGDMLNVSDKTISKWETGNGLPDISILSSLSEVLDTQID 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP 98 + + + N ++ Sbjct: 63 YLLTGEISTNDNKGGNMKNTKFYVCDK 89 >gi|297153462|gb|ADI03174.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G++ L G++ + + E G R L ++ + P+ Sbjct: 16 VGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARIYGVPLDDL 74 >gi|240948598|ref|ZP_04752971.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240297106|gb|EER47677.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 114 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R +G++Q +L E LGI+ V + E+G + RL +SE+ ++ Sbjct: 12 IGRAISKYRQAVGLTQAQLAEILGISNDAVSRMERGKSVPSVLRLLELSEIFGCEVADLL 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S D + + + + + +L +I Sbjct: 72 TESSNRSIDQARKLELLFHHLEDGERSELVALIERI 107 >gi|110800489|ref|YP_695467.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110675136|gb|ABG84123.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 180 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATSLKLDLKS 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|291531495|emb|CBK97080.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 301 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 2/86 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R M+QE L E + ++ Q V K+E +L +S+ + Sbjct: 1 MSLGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDE 60 Query: 73 FFDVSPTV--CSDISSEENNVMDFIS 96 S D + + + F Sbjct: 61 LIKGSAEENFTEDAAGYDKEMNSFTR 86 >gi|119716897|ref|YP_923862.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides sp. JS614] gi|119537558|gb|ABL82175.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides sp. JS614] Length = 508 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 16/125 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++Q +L + LG + + + EKG + L I L+S I Sbjct: 9 IGNLIRDARKHRGLTQHQLADLLGTSQSAINRIEKGHQNLSLEMLARIGAALDSEIVALG 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPD-GLQL------------NRYFIQIDDVKVRQKIIE 121 + + + + +D ++ + G+ L R +I++V +++E Sbjct: 69 AGPTHLRVNGPTTLSGEIDVKTSKNAGVALLCATLLNRGRTTLRKVARIEEVN---RLLE 125 Query: 122 LVRSI 126 ++ S+ Sbjct: 126 VLTSM 130 >gi|50954237|ref|YP_061525.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950719|gb|AAT88420.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 484 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 14/92 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R G++ ++LG + Q+ + G + L I+ L P+S Sbjct: 15 LGHRIRHFRTQRGLTLDELGGAASVAASQLSLIDNGKREPRVTLLAGIAAALGVPVSDLL 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 P ++L R Sbjct: 75 SAEPPDERAALE--------------IELARA 92 >gi|49082682|gb|AAT50741.1| PA4987 [synthetic construct] Length = 200 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R G++ +L +T + + E+ + L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSDISS 86 F V + Sbjct: 79 FASEAAVDPADAG 91 >gi|307701883|ref|ZP_07638892.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307616698|gb|EFN95886.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|332362037|gb|EGJ39839.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 227 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R G+SQ +L LGI+ +E G + + L +S++L +F Sbjct: 6 KLKEKRESQGLSQSQLASSLGISRVSYFNWESGKTKPNQNNLSKLSQILTVDPCYF 61 >gi|298290822|ref|YP_003692761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296927333|gb|ADH88142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 471 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +SQ L LGI+ + E R+ L ++ Sbjct: 8 IGSRVQRLRRAKRVSQADLAVALGISASYLNLIEHNRRRITVPLLMKLAGYFGIEPGELV 67 Query: 75 DVSPT----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + ++ S++ + ++ D L + VR + + +++ + Sbjct: 68 ENDESRLVGDLMELFSDDVFAENALTNQDIRDLAASNPSVGRAVVR--LYDQYKTLRETS 125 Query: 131 KKYRTIEEE 139 ++ +E+E Sbjct: 126 RRQGVVEDE 134 >gi|293400046|ref|ZP_06644192.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306446|gb|EFE47689.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 134 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV- 76 +I+ R G++Q++LGE +G + +++YE G+ L I+ L + F + Sbjct: 12 KIKSYRKSNGLTQKQLGEMIGSSEGMIRQYELGLRNPKMETLTKIANALNINLFDFVPLA 71 Query: 77 ---SPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVRQKI 119 S + S+E +++ I D +Q+ ++F ++++ ++ + Sbjct: 72 EWESKLNGNGALSKEVALIEEIQAQYGSDTVQMVQFFNELNENGKQKAL 120 >gi|288962615|ref|YP_003452909.1| transcriptional regulator [Azospirillum sp. B510] gi|288914881|dbj|BAI76365.1| transcriptional regulator [Azospirillum sp. B510] Length = 118 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 4/98 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GKR+R R +SQE + + + + V E+G L +S L Sbjct: 1 MSDDLKRRIGKRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRL 60 Query: 67 ESPISFFFDVSPTVCSDISSEEN----NVMDFISTPDG 100 + P+ FFD V S + + V+ +S + Sbjct: 61 DVPLVDFFDDGEAVVSPARAATDMRLREVLRGLSDREA 98 >gi|262283609|ref|ZP_06061374.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260666|gb|EEY79367.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 67 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L + L + KYE G + + +++ I + Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSRYGKYENGKTNLSIENAKKVAKYFGVTIDYLLGS 62 Query: 77 SPTV 80 Sbjct: 63 ESDQ 66 >gi|296128010|ref|YP_003635260.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296019825|gb|ADG73061.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 91 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI + R G+S+ +L + LG+ +Q V E+G I+ + P+ F Sbjct: 18 VHNRISVLRAERGVSRRQLADALGVHYQTVGYLERGEYSPSLHLALRIAAFFDVPVEVLF 77 Query: 75 DVSP 78 + P Sbjct: 78 SLDP 81 >gi|261345017|ref|ZP_05972661.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566698|gb|EFB72233.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 97 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 V +G ++ RR G++ +L L I+ QQ+ +YE+GVN + L I LE Sbjct: 12 VSTYIGTFLKRRRKGAGLTGAELASRLSISQQQISRYERGVNAITIQSLLGILHALE 68 >gi|147668752|ref|YP_001213570.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|147668945|ref|YP_001213763.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432070|ref|YP_003461943.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|146269700|gb|ABQ16692.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|146269893|gb|ABQ16885.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288945790|gb|ADC73487.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 71 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G+RIR+ R +SQE+L G+ + E+G ++ I++ LE PI Sbjct: 6 IEQRFGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGERNPSLKNIEAIAKALEVPI 65 Query: 71 SFFF 74 S F Sbjct: 66 SDLF 69 >gi|296168067|ref|ZP_06850133.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896874|gb|EFG76502.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 471 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 18/131 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI + V + + + L R + + R+ I Sbjct: 65 ASQDDTRLVAELREVTMDRDLDIDVDPGEVAELVGSH--PALARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKK 132 + ++E++ Sbjct: 119 TAQLAAATEER 129 >gi|256396415|ref|YP_003117979.1| hypothetical protein Caci_7309 [Catenulispora acidiphila DSM 44928] gi|256362641|gb|ACU76138.1| protein of unknown function DUF955 [Catenulispora acidiphila DSM 44928] Length = 283 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 3/110 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG+RIR R G SQ +L L T + +E G VG L ++ VL I Sbjct: 6 VEVGQRIRAARTRRGWSQAELAARLAGQPTPTAISYWESGRRSVGLDDLIELARVLGLGI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 S P + + V + + + F + + + R ++ Sbjct: 66 SELL-PDPREQRPVGALLRAVAEQVDAQQLAEQLEAFAKDAEQRPRPSLL 114 >gi|240147526|ref|ZP_04746127.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200275|gb|EEU98559.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 238 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 37 KLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 96 Query: 72 FFFDVSPTVCSDISSE 87 + + +DI+ + Sbjct: 97 WLKGETDEYETDITDK 112 >gi|212638482|ref|YP_002315002.1| SOS-response transcriptional repressor LexA (HTH, RecA-mediated autopeptidase) [Anoxybacillus flavithermus WK1] gi|212559962|gb|ACJ33017.1| SOS-response transcriptional repressor LexA (HTH, RecA-mediated autopeptidase) [Anoxybacillus flavithermus WK1] Length = 195 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q L + L + V +E+ NR ++ +SE+ + PIS+FF+ T+ Sbjct: 1 MTQADLAKKLNVAPTAVSAWERNENRPLMDKIAIMSEMFDVPISYFFEDFKTIQEVREEP 60 Query: 88 ENNV 91 + Sbjct: 61 AQYI 64 >gi|161508263|ref|YP_001569094.1| DNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734835|ref|ZP_04869000.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|282912706|ref|ZP_06320501.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|160369778|gb|ABX30747.1| DNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727208|gb|EES95937.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|270269068|gb|ACZ66060.1| hypothetical protein SAP035B_020 [Staphylococcus aureus] gi|270269096|gb|ACZ66088.1| hypothetical protein SAP036A_016 [Staphylococcus aureus] gi|270269128|gb|ACZ66120.1| hypothetical protein SAP042A_015 [Staphylococcus aureus] gi|270300247|gb|ACZ69053.1| hypothetical protein SAP058A_010 [Staphylococcus aureus] gi|270300466|gb|ACZ69272.1| hypothetical protein SAP071A_016 [Staphylococcus aureus] gi|282323431|gb|EFB53748.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|312439078|gb|ADQ78148.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH60] gi|320143353|gb|EFW35135.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 113 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ +R + G SQE+L L ++ Q V K+E N L +S++ I Sbjct: 7 IKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITIDHLIKGD 65 >gi|133919924|emb|CAM12484.1| hypothetical protein [uncultured bacterium] Length = 136 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPIS 71 + G++++ R LG++Q++L E +G+T + + YE +R G R + ++ L ++ Sbjct: 1 MTFGEKVKAERTKLGLNQDELAEKIGVTRRVICSYENDKSRPRGTERYKKLAGALNVNVN 60 Query: 72 FFFDVSPTVCSDISSE 87 + +D+ + Sbjct: 61 YLLSEDDAFIADVEDK 76 >gi|157372360|ref|YP_001480349.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157324124|gb|ABV43221.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 84 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +R++ R G++QEKLG GI ++ +YE G + + ++ VL+ P Sbjct: 2 VPQRLKSARQRAGLTQEKLGVLAGIDEATARSRISQYESGTYTPTFTTMCALARVLDVPE 61 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 +F+ + + ++ Sbjct: 62 CYFYILDDAFSEKVLRLHQESLE 84 >gi|206970068|ref|ZP_03231021.1| putative transcriptional regulator PlcR [Bacillus cereus AH1134] gi|228955599|ref|ZP_04117599.1| hypothetical protein bthur0006_49510 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229112764|ref|ZP_04242296.1| hypothetical protein bcere0018_50020 [Bacillus cereus Rock1-15] gi|229181599|ref|ZP_04308924.1| hypothetical protein bcere0005_49380 [Bacillus cereus 172560W] gi|37650514|emb|CAE47446.1| PlcR protein [Bacillus thuringiensis serovar konkukian] gi|37650602|emb|CAE46798.1| PlcR protein [Bacillus thuringiensis] gi|37650606|emb|CAE46800.1| PlcR protein [Bacillus thuringiensis] gi|37650610|emb|CAE46802.1| PlcR protein [Bacillus thuringiensis] gi|37654142|emb|CAE46904.2| transcriptional regulator [Bacillus thuringiensis] gi|37904132|gb|AAO43573.1| transcriptional activator plcR [Bacillus thuringiensis serovar canadensis] gi|55419785|gb|AAV51963.1| PlcR [Bacillus thuringiensis serovar kurstaki] gi|206734645|gb|EDZ51814.1| putative transcriptional regulator PlcR [Bacillus cereus AH1134] gi|228601795|gb|EEK59291.1| hypothetical protein bcere0005_49380 [Bacillus cereus 172560W] gi|228670598|gb|EEL25910.1| hypothetical protein bcere0018_50020 [Bacillus cereus Rock1-15] gi|228804075|gb|EEM50694.1| hypothetical protein bthur0006_49510 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 285 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|327461171|gb|EGF07504.1| hypothetical protein HMPREF9394_1037 [Streptococcus sanguinis SK1057] Length = 523 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ +R+ +G++Q+ + + L I+ Q + +E G + L +++LE F Sbjct: 2 IGNFLKQKRLAMGLTQDFVAKQLNISRQAISNWENGSRDINIRDLIAYAKILEIS----F 57 Query: 75 DVSPTVCSDISSEEN 89 + + I N Sbjct: 58 EDLEVHVNRIDGNSN 72 >gi|310826605|ref|YP_003958962.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308738339|gb|ADO35999.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 118 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+R R + +SQ K+ E LG+ + +YE+G + L ++ + + + Sbjct: 2 KELGERLRRLRESVKLSQVKMAELLGVKQSSINRYEQGQSAPSLETLVRYADYFDVSLDY 61 Query: 73 F 73 Sbjct: 62 L 62 >gi|302384944|ref|YP_003820766.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302195572|gb|ADL03143.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 87 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R++ R LG++QE+LG+ +G + Q + E N I++V + PI F F Sbjct: 3 NRMKELREKLGITQEQLGQLVGASRQAIHALETEKNEPSIWLAYDIAQVFKEPIEHVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EDSE 66 >gi|294673230|ref|YP_003573846.1| DNA-binding protein [Prevotella ruminicola 23] gi|294472225|gb|ADE81614.1| DNA-binding protein [Prevotella ruminicola 23] Length = 193 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +S + + E G+T +Q++ E VN L I+ L + F Sbjct: 7 VGAKIKGLRETKNLSIDVIAERSGLTVEQIESIENDVNLPSLGPLIKIARALGVRLGTFM 66 Query: 75 DVSPTVCSDISSEENNVMD 93 D + + + E+ D Sbjct: 67 DDNDALGPIVCRAEDREKD 85 >gi|149203629|ref|ZP_01880598.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142746|gb|EDM30788.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 436 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RIR RR++ GM Q L + GI+ + E R+G L ++E L+ S Sbjct: 7 IGTRIRERRVLNGMRQSDLAQRAGISPSYLNLIEHNHRRIGGKTLLKLAEALKVEPS 63 >gi|320547716|ref|ZP_08042001.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447791|gb|EFW88549.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 114 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R+ +SQ+ L E L I+ Q + KYE G + L I+++L + Sbjct: 10 QLKKLRVERKLSQDALAEQLFISRQSISKYETGESTPDLENLIKIADILGVSLD 63 >gi|291544366|emb|CBL17475.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 322 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 7/110 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G SQE+L + + ++ Q V K+E + ++ +S + + Sbjct: 6 KLIQLRKKSGWSQEELAQQMHVSRQSVSKWEGAQSVPDLEKMVQLSRLFHVTTDYLLKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ-KIIELVRSI 126 E+ + + L+ F+ + K R ++I + Sbjct: 66 EGEPEPAPGED--PGEPLR-RVSLEEASAFL---EAKQRSARLIAFATML 109 >gi|237748892|ref|ZP_04579372.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229380254|gb|EEO30345.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 110 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 25/112 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ++LG G + ++ +YEKGV++ + ++ VL P+++ Sbjct: 14 RRLKDARIKAGLSQKRLGIEAGIDEFVASTRINRYEKGVHQADEATAILLAHVLGVPLAY 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F+ ++ S ++ F QLNR R ++++LV+ Sbjct: 74 FY-------AEDDSLAEMILGFC------QLNRA--------DRNEVLDLVQ 104 >gi|90419571|ref|ZP_01227481.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336508|gb|EAS50249.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 167 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 17/115 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R LG++ +L LG+ + ++ +E+ + A+RL +S +L ++ Sbjct: 62 GGRIQRGRESLGITTAELAARLGVKPETMRGWERDRSEPRANRLITLSGILGVSPAWLLG 121 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V + +EN + ++D+++ R+ +++ R I E Sbjct: 122 GYGEVPDTVDLDENGMA---------------ARLDNLRARRDVLD--REIARLE 159 >gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] Length = 516 Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G IR R G++Q +L E LG + V + E+G V LQ + L+ I Sbjct: 17 QIGALIRDARKHRGLTQVQLAERLGTSQSAVHRMEQGQQNVSIDMLQRVGHALQDDI 73 >gi|308751810|gb|ADO45293.1| transcriptional regulator, XRE family [Hydrogenobacter thermophilus TK-6] Length = 311 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R LG+SQE+ GE +G + + +Q +E G ++ + L+ I+ ++ Sbjct: 90 NRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTFGVS----YEW 145 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 T ++ E ++ I + +L Sbjct: 146 LKTGQGEMWGREKLSLEEIIEREQRKLLES 175 >gi|302388982|ref|YP_003824803.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302199610|gb|ADL07180.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 135 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+R++ R G+S+E+L L +++ + KYE V + L+ I++ + + + Sbjct: 1 MDFGERLQELRKEKGISREELARALQVSYSAIAKYETNVRKPDQETLKKIADYFDVTVDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|294102131|ref|YP_003553989.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293617111|gb|ADE57265.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 226 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ IR R G +Q++L + +G+ + +EK + +S LE I++ Sbjct: 4 GEEIRRLRKAKGWTQQQLADNVGVAKTTIVDWEKDRYFPTGENVHKLSRSLEVSIAYLM 62 >gi|302382023|ref|YP_003817846.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192651|gb|ADL00223.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 65 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R R G +QE+LG+ LG++ Q V E + I+ V P+ FD Sbjct: 5 LRDLRTSRGWTQEQLGQALGVSRQAVNALETEKHDPSLDLAYRIAAVFGQPVEAIFD 61 >gi|210622425|ref|ZP_03293157.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM 13275] gi|210154241|gb|EEA85247.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM 13275] Length = 66 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R L M+Q+ L E +G+T Q + EKG + I +VL + F Sbjct: 6 KIKSARAALDMTQKDLAEKVGVTRQTISAIEKGDYNPTINLCIQICKVLGKTLDELF 62 >gi|160895055|ref|ZP_02075829.1| hypothetical protein CLOL250_02605 [Clostridium sp. L2-50] gi|156863486|gb|EDO56917.1| hypothetical protein CLOL250_02605 [Clostridium sp. L2-50] Length = 209 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSE 87 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDK 83 >gi|73541020|ref|YP_295540.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha JMP134] gi|72118433|gb|AAZ60696.1| transcriptional regulator, XRE family with shikimate kinase activity [Ralstonia eutropha JMP134] Length = 309 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 18/154 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+RIR R GMS++ L ++ + + E G L+ ++ L+ Sbjct: 23 DPYLTQLGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVARALDV 82 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR---------YFIQIDDVKVRQKI 119 P+ + +E ++ +++ L R + D + R+ Sbjct: 83 PLPVVLAEVDGLNGQQVTEFAQLVQWLAQLPTGDLARVRDACRHALAPAESRDARHRRIA 142 Query: 120 I---------ELVRSIVSSEKKYRTIEEECMVEQ 144 + L R++ ++E + ++ Sbjct: 143 LIGLRGAGKSTLGRALAAAEDMPFVELNNVIEQE 176 >gi|15600180|ref|NP_253674.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107104087|ref|ZP_01368005.1| hypothetical protein PaerPA_01005160 [Pseudomonas aeruginosa PACS2] gi|116053135|ref|YP_793456.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894084|ref|YP_002442953.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238300|ref|ZP_04931623.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|254244126|ref|ZP_04937448.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|296391830|ref|ZP_06881305.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110019|ref|ZP_07795924.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951271|gb|AAG08372.1|AE004911_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588356|gb|ABJ14371.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170231|gb|EAZ55742.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|126197504|gb|EAZ61567.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|218774312|emb|CAW30129.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310882426|gb|EFQ41020.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 199 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R G++ +L +T + + E+ + L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSDISS 86 F V + Sbjct: 79 FASEAAVDPADAG 91 >gi|322833805|ref|YP_004213832.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169006|gb|ADW74705.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 87 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R ++QEKLG GI +V +YE G + H + VL P +F Sbjct: 5 RLKSARTKARLTQEKLGVLAGIDESTARSRVSQYENGTYSPNFDTMCHFARVLNVPECYF 64 Query: 74 FDVSPTVCSDI 84 + + ++ Sbjct: 65 YIIDDAFAEEV 75 >gi|182626312|ref|ZP_02954068.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908410|gb|EDT70952.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 180 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALANSLKLDLKS 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|169343361|ref|ZP_02864365.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] gi|169298447|gb|EDS80533.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] Length = 64 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPI-SFFFD 75 +I+LRR+ G++Q++L +GI+ + K+E G + + ++ L++ + FF Sbjct: 2 KIKLRRISKGLTQKELANKVGISHVTLSKFENGSYENITLRTMLKLAAALDTTVHELFFS 61 Query: 76 VSP 78 Sbjct: 62 DEE 64 >gi|121603936|ref|YP_981265.1| XRE family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120592905|gb|ABM36344.1| transcriptional regulator, XRE family [Polaromonas naphthalenivorans CJ2] Length = 223 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 41/88 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+++R RR LG+ +++ G++ + + E+G+ + L +S L+ P+ Sbjct: 34 IDLWLGEQVRHRRKALGLPLQQVARGCGVSVSLLSQIERGLRSISLRTLAALSNELQLPL 93 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 + + + E + V + Sbjct: 94 ETLIRNTQHDQGEGAPERSVVRAGMHQR 121 >gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 37/62 (59%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +IR R G++ ++LG+ ++ + + E+G + V + L+ I+ LE+ +++ Sbjct: 7 KDIGNKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTSAVSITALEKIAHALETELAY 66 Query: 73 FF 74 FF Sbjct: 67 FF 68 >gi|325298681|ref|YP_004258598.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318234|gb|ADY36125.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 191 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R +S ++L E G+T Q+++ E ++ + L I+ L + F Sbjct: 7 IGEKIKDLRTAKEISIDELAERTGLTAGQIERIENNIDIPSLAPLLKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 D + D IS Sbjct: 67 DDQSEEDGPVVCRRGEADDTIS 88 >gi|317496310|ref|ZP_07954668.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424] gi|316913568|gb|EFV35056.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424] Length = 64 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +I R GM+Q++L LG++ Q V E +S++ P+ Sbjct: 1 MSIPNKISFYRKKNGMTQDELASMLGVSRQFVSSIEGAKKIPSIKLAFQLSDIFGVPVDN 60 Query: 73 FF 74 F Sbjct: 61 LF 62 >gi|261493122|ref|ZP_05989658.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496455|ref|ZP_05992838.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307888|gb|EEY09208.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311210|gb|EEY12377.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 64 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R +G+SQ++L +G+T + YE+G+ + ++ ++E L + + V Sbjct: 2 NKIRQFRRAIGLSQQELASVIGVTTGAIGFYERGLREPNLATIKKLAEALNCKPADLYPV 61 Query: 77 SPT 79 Sbjct: 62 LEG 64 >gi|206973277|ref|ZP_03234199.1| conserved domain protein [Bacillus cereus AH1134] gi|206732161|gb|EDZ49361.1| conserved domain protein [Bacillus cereus AH1134] Length = 66 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ L MSQE L + +G+ + + E G I++VL++P+ F Sbjct: 6 RMKEYRVKLNMSQEDLAKEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPLEVLF 62 >gi|28211763|ref|NP_782707.1| transcriptional regulator [Clostridium tetani E88] gi|28204205|gb|AAO36644.1| transcriptional regulator [Clostridium tetani E88] Length = 136 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GK+I+ R ++QE+L +G++ V YE + L I++ + + Sbjct: 2 IDL-LGKKIKSLRKDNKITQEELAIKIGVSTSMVGMYETDARKPSYEVLIKIADYFKVSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + T + N + F + + +Q Sbjct: 61 DYL--LRETEYKTYIGTKENCIKFKTVEEAMQ 90 >gi|28210273|ref|NP_781217.1| transcriptional regulator [Clostridium tetani E88] gi|28202709|gb|AAO35154.1| transcriptional regulator [Clostridium tetani E88] Length = 436 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L+++SE L+ I + Sbjct: 8 LGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLSEALDVSIEYLM 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + T + N+ + + L L + Sbjct: 67 ETEETQAEKVCYYFENIAEAHILNNDLSLGEEYT 100 >gi|37650524|emb|CAE47451.1| PlcR protein [Bacillus thuringiensis] Length = 300 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|134293636|ref|YP_001117372.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136793|gb|ABO57907.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 191 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 7/126 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 11 VAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSS 129 +F D S + F ++ F ++ + +K+ LVR Sbjct: 71 QYFIDTPTEARSVCRAHALQYFQFTNS------ANLFAKLTNPVDGRKLDAILVRMPAGQ 124 Query: 130 EKKYRT 135 T Sbjct: 125 SPSEIT 130 >gi|253690481|ref|YP_003019671.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757059|gb|ACT15135.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 105 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R++ G+SQ+ LG G + ++ +YEKGV+ ++E L+ P+++ Sbjct: 13 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANLVTASRLAEALDVPLAY 72 Query: 73 FFDVSPTVC 81 F+ + Sbjct: 73 FYAADDNLA 81 >gi|157363615|ref|YP_001470382.1| cupin 2 domain-containing protein [Thermotoga lettingae TMO] gi|157314219|gb|ABV33318.1| Cupin 2 conserved barrel domain protein [Thermotoga lettingae TMO] Length = 177 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 10/130 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R+ G++QE+L ++ + + E + L+ I L + + Sbjct: 1 MNIGGKIKRLRLSRGLTQEELAMRTDLSRSFISQLESNKTSLAVDTLEKILRALGTDLKA 60 Query: 73 FFDVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVKVRQ---KIIELVRSIVS 128 FF E+ V D P+G+ ++ + DV+ ++ ++ L + Sbjct: 61 FFSEEEEAKIVFKKEDRIPVYD---EPEGIT---SYLLMSDVETKKVDPTLVTLAPGAQT 114 Query: 129 SEKKYRTIEE 138 E+ Y +E Sbjct: 115 EEEGYHEGDE 124 >gi|332687060|ref|YP_004456834.1| MerR family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371069|dbj|BAK22025.1| transcriptional regulator, MerR family, near polyamine transporter [Melissococcus plutonius ATCC 35311] Length = 180 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 36/80 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+R R+ ++QE+LGE +T + + E+ ++ I EVL Sbjct: 1 MEIGDRLRNLRIQRDLTQEELGERTDLTKGYISQLERNLSSPSMETFFTILEVLGVSPEE 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF+ + +++N Sbjct: 61 FFNEQTMEQKIVYQDKDNTH 80 >gi|331092206|ref|ZP_08341036.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401978|gb|EGG81552.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium 2_1_46FAA] Length = 347 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+ IR R M+QE++ E LG+T V K+E G + S L I+ +L Sbjct: 1 MKIGEVIRKYRKEKQMTQEEMAEYLGVTTPAVNKWENGNSMPDISLLAPIARLLGIS 57 >gi|324115562|gb|EGC09501.1| helix-turn-helix protein [Escherichia coli E1167] Length = 228 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+++ R GMSQ +L E +G++ Q V K E G + +++ I++VL + Sbjct: 6 ERLKIGREKAGMSQAQLAEKIGLSQQSVAKIENGET-LQPRKIKEIAKVLGVSQKWL 61 >gi|254499432|ref|ZP_05112093.1| transcriptional regulator [Legionella drancourtii LLAP12] gi|254351331|gb|EET10205.1| transcriptional regulator [Legionella drancourtii LLAP12] Length = 83 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 +D V KR++ R+ +G+SQ+KLG G+ ++ YE G + S L+ I+EVL Sbjct: 1 MDSPVPKRLKEARLAMGISQKKLGIAAGMDEFSASARMNHYEIGRHTPDYSTLKRIAEVL 60 Query: 67 ESPISFFFDVSPTVCS 82 P +FF+ + + Sbjct: 61 SVPTAFFYAEEDELAN 76 >gi|229020571|ref|ZP_04177313.1| hypothetical protein bcere0030_50500 [Bacillus cereus AH1273] gi|229026789|ref|ZP_04183121.1| hypothetical protein bcere0029_50560 [Bacillus cereus AH1272] gi|228734512|gb|EEL85174.1| hypothetical protein bcere0029_50560 [Bacillus cereus AH1272] gi|228740735|gb|EEL90991.1| hypothetical protein bcere0030_50500 [Bacillus cereus AH1273] Length = 285 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|257791416|ref|YP_003182022.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475313|gb|ACV55633.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 205 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G++++ R G++QE+L L ++ V K+E G LQ ++ + + + Sbjct: 1 MDFGEKLKALRTERGLTQEQLAAKLYVSRTAVSKWETGGGSPNLDSLQVVARLFDVSVDD 60 Query: 73 FFDVSP 78 Sbjct: 61 LLSTDD 66 >gi|172058590|ref|YP_001815050.1| helix-turn-helix domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991111|gb|ACB62033.1| helix-turn-helix domain protein [Exiguobacterium sibiricum 255-15] Length = 294 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R ++Q+ L + + ++ K E G + L +S L+ PI+ F Sbjct: 8 QIGLALRRLRKKHNLTQKDLANGI-CSQAEISKIESGTHSPTVDLLYALSRRLQVPINTF 66 Query: 74 FDVSPTVCSDISSEENNVMDF 94 D + S +EN ++ F Sbjct: 67 LDHTNYRESLKILDENLLVRF 87 >gi|163791661|ref|ZP_02186057.1| DNA-binding protein [Carnobacterium sp. AT7] gi|159873083|gb|EDP67191.1| DNA-binding protein [Carnobacterium sp. AT7] Length = 170 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 10/102 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R+ G SQ + + L I+ Q + K+E G + L +S E I Sbjct: 1 MALGERLKASRVNKGYSQGDVADYLHISRQSISKWENGNSYPDLDNLVKLSTYYEVSIDE 60 Query: 73 FFDVSPTVCSDISSEENNV------MDFIS----TPDGLQLN 104 + + I E + +DFI +GL L Sbjct: 61 LLKENQELKRKIEENEVKIEENVQKLDFIRGNTDKDEGLILL 102 >gi|115359612|ref|YP_776750.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170701460|ref|ZP_02892415.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171320762|ref|ZP_02909771.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|172064423|ref|YP_001812074.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115284900|gb|ABI90416.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] gi|170133622|gb|EDT01995.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171093979|gb|EDT39090.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171996940|gb|ACB67858.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 192 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 11/130 (8%) Query: 1 MVGNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV + D +G +IR R L + + GI+ + + E+G+ + L Sbjct: 1 MVSPTENSRSADAAALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQ 109 I++ L + +F D S E+ F + +G QL ++ Sbjct: 61 AGIAQALGVTVQYFVDTPSEERSVCRGEQLRFFGFADSANLFARLTNVSEGRQLEAILVR 120 Query: 110 IDDVKVRQKI 119 + + R ++ Sbjct: 121 LPPGQKRSEV 130 >gi|325568823|ref|ZP_08145116.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157861|gb|EGC70017.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 182 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R+ ++QE+LGE +T + + E+ ++ I EVL Sbjct: 1 MNMEIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTP 60 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 FF + EE++ + Sbjct: 61 EEFFREENAQHQVVYREEDSTL 82 >gi|296876650|ref|ZP_06900698.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|312867662|ref|ZP_07727868.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|322389318|ref|ZP_08062877.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|296432152|gb|EFH17951.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|311096725|gb|EFQ54963.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|321143982|gb|EFX39401.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 66 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ LG+SQ L + +G++ Q + E G ++++ L + ++ F Sbjct: 2 NRVKEYRVNLGLSQLALAKSIGVSRQTINMIENGKYNPSLDLCINLAKELGTDLNSLF 59 >gi|253576542|ref|ZP_04853871.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844179|gb|EES72198.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 72 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KRIR R+ ++Q++L E L I+ +YE G V +S L ++ I + Sbjct: 3 KRIRDLRVDRDLTQQQLAEHLNISQATYSRYENGNLDVPSSVLIKLANFYNVSIDY 58 >gi|271969128|ref|YP_003343324.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512303|gb|ACZ90581.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 199 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG R++ R G+S L E GI+ + + E G R L I++ + P+ Sbjct: 12 AQVGSRLKRIRTQRGISLSALAEATGISKSTLSRLETGQRRPSLELLLPIAQAHQVPLDE 71 Query: 73 FFDVSPTVCSDISSEEN 89 I S+ + Sbjct: 72 LVGAPEVGDPRIRSKPS 88 >gi|227328285|ref|ZP_03832309.1| hypothetical protein PcarcW_13545 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 86 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI +V +YE G++R + ++VL P +F Sbjct: 5 RLKAARLRANLTQEKLGVLAGIEEETARSRVSQYEGGIHRPTFEMMCAFAKVLNVPECYF 64 Query: 74 FDVSPTVCS 82 + V+ Sbjct: 65 YTVNDDFAG 73 >gi|84386363|ref|ZP_00989391.1| transcriptional regulator, putative [Vibrio splendidus 12B01] gi|84378787|gb|EAP95642.1| transcriptional regulator, putative [Vibrio splendidus 12B01] Length = 101 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEV 65 +D + R++ R +SQ++LG +GI ++ +YEKG + S L+ + + Sbjct: 2 SIDNPIPMRLKEVRKKAKISQKELGVRIGIDESSASARMNQYEKGKHTPDISTLKKMGDE 61 Query: 66 LESPISFFF 74 L P+++FF Sbjct: 62 LGVPLNYFF 70 >gi|328886799|emb|CCA60038.1| Transcriptional regulator, MerR family [Streptomyces venezuelae ATCC 10712] Length = 189 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P I VG+ IR R G+S L G++ + + E+G+ S + I+E L+ Sbjct: 6 PTPEAIEVGRVIRSCRKQRGVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRIAEALD 65 Query: 68 SPISFFFDVSPTVCSDISSEENN 90 F P +S E + Sbjct: 66 VTPGTFLR-PPGRPGAVSHESDP 87 >gi|327490807|gb|EGF22588.1| hypothetical transcriptional regulator [Streptococcus sanguinis SK1058] Length = 231 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ RR+ LG+ Q + E L ++ Q +EKG + L+ + +L+ P +F ++ Sbjct: 10 KLKNRRLKLGLRQVDIIEKLNVSKQAYSAWEKGKIKPSQDNLKKLETILKVPEGYFTELE 69 Query: 78 PTV 80 Sbjct: 70 IAT 72 >gi|300115054|ref|YP_003761629.1| XRE family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540991|gb|ADJ29308.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 84 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +D++VG+ +R+ R + MSQ +L + GI + E +G R + Sbjct: 1 MKNYKIAKRQIDVSVGESVRIIRELQEMSQNELAKLAGIPQSTISAIENDRVNLGVERAK 60 Query: 61 HISEVLESPIS 71 ++ L+ + Sbjct: 61 QLALALKCHPA 71 >gi|290889566|ref|ZP_06552656.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429] gi|290480764|gb|EFD89398.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429] Length = 198 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R LGM+Q+++ E L ++ Q + +EKG N L +S++ + + Sbjct: 13 ISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDVLIKGDK 72 Query: 79 TVCSDISSEENNV 91 V + + ++ Sbjct: 73 KVMKKVQEDSQDL 85 >gi|238916590|ref|YP_002930107.1| hypothetical protein EUBELI_00647 [Eubacterium eligens ATCC 27750] gi|238871950|gb|ACR71660.1| Hypothetical protein EUBELI_00647 [Eubacterium eligens ATCC 27750] Length = 294 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 15/114 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ R+ G +Q +LG+ LG+T + + ++EKG + S ++ +S VL+ I Sbjct: 7 GELIKSARIKKGYTQVELGDLLGVTNKAISRWEKGDSFPDISVIEELSRVLDIRI----- 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIVS 128 V D++ ++ ++ R +++ D VK R+ I V I + Sbjct: 62 -QDIVIGDVTEPDSETA-------VTEVVRA-VKLQDKVKKRKFISSGVSCIAA 106 >gi|225019958|ref|ZP_03709150.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum DSM 5476] gi|224947322|gb|EEG28531.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum DSM 5476] Length = 126 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 18/128 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R G+ Q++L + + ++ + YE G N + L ++ + + + D Sbjct: 5 KKLKDLRTYHGLKQKELAKAINVSSSTISGYENGKN-PDYNTLVKLANYFKVSVDYLLDN 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 SP S +F + R + + K+IE+++ + +S+++ Sbjct: 64 SPVKLSYDELNS----EFQLSK------RKYSSL-------KLIEMIKELDTSDQEAIIY 106 Query: 137 EEECMVEQ 144 E E+ Sbjct: 107 ILESFSEK 114 >gi|116490172|ref|YP_809716.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1] gi|116090897|gb|ABJ56051.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1] Length = 192 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R LGM+Q+++ E L ++ Q + +EKG N L +S++ + + Sbjct: 7 ISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDVLIKGDK 66 Query: 79 TVCSDISSEENNV 91 V + + ++ Sbjct: 67 KVMKKVQEDSQDL 79 >gi|108758699|ref|YP_628542.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] gi|108462579|gb|ABF87764.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] Length = 272 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +++G +RL R G+S L +G++ + + E GV+ RL I+ L P S Sbjct: 1 MHLGATLRLLRTDAGLSLRDLARRIGVSSAYLSRVENGVDAPPTPERLSAIARELRVPSS 60 Query: 72 FFFDVSPTVCSDISSEENNVMD----FISTPD----GLQLNR 105 DV+ + +++ V F+ GLQL R Sbjct: 61 LLMDVANRMSPSVAAYLEEVPGAGALFLDIAQRRLSGLQLAR 102 >gi|71907867|ref|YP_285454.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847488|gb|AAZ46984.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 119 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 5/107 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK + +G + RR LG +QE + E +G+ + + + E+G + L Sbjct: 1 MAVKKKDSARLAKRLGGNLSERRKQLGWTQEMVAERVGVDAETISRIERGAHLPSLPTLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 ++ L D+ + +SE +IS R F Sbjct: 61 RLAVALRCSAG---DLLSNEGPEEASEAATFGAWISELGTDD--RAF 102 >gi|332160142|ref|YP_004296719.1| putative transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607291|emb|CBY28789.1| hypothetical protein Y11_37411 [Yersinia enterocolitica subsp. palearctica Y11] gi|325664372|gb|ADZ41016.1| Predicted transcriptional regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859693|emb|CBX70029.1| hypothetical protein YEW_IC35700 [Yersinia enterocolitica W22703] Length = 262 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R L ++Q +L + +G + QQ+Q+ E G Q IS VL+ P++ F Sbjct: 3 NKIKELRTQLSITQRELADMVGTSQQQIQRIETGKVAAKLGLAQAISAVLKKPLNAVFPD 62 Query: 77 SPTVCSDISSEENNVMD 93 S + + ++ + D Sbjct: 63 SDNLLKKLRNQSSRSDD 79 >gi|308048864|ref|YP_003912430.1| XRE family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307631054|gb|ADN75356.1| transcriptional regulator, XRE family with cupin sensor [Ferrimonas balearica DSM 9799] Length = 180 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 40/86 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R G+SQ +L + G+T + + EK + L+ I + L ++ Sbjct: 1 MDIGNRLRQLRTQAGLSQRELAKRTGVTNGFISQVEKNSVSPSVASLKKILDGLPISLTN 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 FFD + + + + + S P Sbjct: 61 FFDSEERQPAQVVFRADEMPNIGSGP 86 >gi|222530393|ref|YP_002574275.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457240|gb|ACM61502.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 77 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK++R R G+SQ++L + G+ + E+ ++ ++ L I F Sbjct: 2 VGKKLRKLRTQKGLSQQQLAKIAGVPQSTIWYIERENRNPTIKTMKRLATALGVSIEEFL 61 Query: 75 DVS 77 D Sbjct: 62 DSE 64 >gi|91782830|ref|YP_558036.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91686784|gb|ABE29984.1| Transcriptional Regulator, XRE(MerR) family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 191 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 7/136 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV V + +G +IR R L + +++ + GI+ + + E+G + L Sbjct: 1 MVLPLNNKAHVAVAIGSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI- 119 I+ L + +F D S + + F + F ++ ++ V K+ Sbjct: 61 GIARALGVTVQYFVDTPTEDKSVLRGSDLKYFGFDGS------ANLFGRLTNLSVGSKLE 114 Query: 120 IELVRSIVSSEKKYRT 135 + LVR V T Sbjct: 115 VILVRMPVGQNPSEVT 130 >gi|322375254|ref|ZP_08049767.1| zinc-binding transcriptional regulator, Cro/CI family [Streptococcus sp. C300] gi|321279517|gb|EFX56557.1| zinc-binding transcriptional regulator, Cro/CI family [Streptococcus sp. C300] Length = 377 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R+ G+++++L E GI+ Q + YE G GAS+L I L+ P ++F Sbjct: 9 SKLTKARIARGLTKKELAERTGISRQMISNYELGKTHPGASKLMTIVAELDFPYAYF 65 >gi|317055556|ref|YP_004104023.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447825|gb|ADU21389.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 297 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + RR LG++Q+ L + L ++ Q V K+E + L +++ L + I F Sbjct: 9 KNLVKRRKELGLTQDMLAQKLNVSAQAVSKWENSS-YPDSELLPMLAKALGTSIDSLF-- 65 Query: 77 SPTVCSDISSEENNVMDFISTP 98 S S E +++ I Sbjct: 66 ----GSKNSDPETDILQLIHDR 83 >gi|302385132|ref|YP_003820954.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302195760|gb|ADL03331.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 174 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R LG+SQE+ G+ L +T + K E G+N ++ I + Sbjct: 3 NRIKEVRKKLGLSQEEFGKRLRVTKTSISKIEAGINNPSDQTIKLICSEFSVNEEWLRTG 62 Query: 77 SPTVCSDISSEE 88 + + SE+ Sbjct: 63 AGGQDNMFLSED 74 >gi|294013107|ref|YP_003546567.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676437|dbj|BAI97955.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 471 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 59/130 (45%), Gaps = 12/130 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++K + +G ++R+ R LG++Q ++ E LG++ + E+ + A L Sbjct: 1 MADDRK------LYLGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLL 54 Query: 61 HISEVLESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ V + I F + + + S+I S+ I+ + L++ + + + R Sbjct: 55 RLANVYDIDIRDFVASTQEGAASALSEILSDALVRDIGIARDEVLEVAENYPGVSEAIGR 114 Query: 117 --QKIIELVR 124 + + +L R Sbjct: 115 FYRALSDLRR 124 >gi|290131506|gb|ADD23348.1| PlcR [Bacillus sp. RS1045] Length = 285 Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|313898251|ref|ZP_07831789.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957015|gb|EFR38645.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 357 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 26/153 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I R G +QE L L ++ V K+E G + S L ++ + + I Sbjct: 1 MDIGKNIVRLRNEKGYTQEMLASLLHVSSAAVSKWEHGSSCPDISTLPILARIFDISIDE 60 Query: 73 F--FDVSPTVCSDISSEENNVMDFIST--PDGLQ--------------LNRYFIQID--- 111 F+ + + E + F S P+ + L F ++ Sbjct: 61 LLNFEKNLSEEQVNRLCEEMLGQFQSAPFPEAMAYVKKVLRQYPNSESLKLSFARLSMQV 120 Query: 112 -----DVKVRQKIIELVRSIVSSEKKYRTIEEE 139 + + + L + + + +E++ Sbjct: 121 LLLLQEEGQANEFLALAKQLAQEVSQSADLEKK 153 >gi|296272112|ref|YP_003654743.1| XRE family transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096287|gb|ADG92237.1| transcriptional regulator, XRE family [Arcobacter nitrofigilis DSM 7299] Length = 197 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NVGK+I+ R M+ ++L + GI++ + E G + L+ +++VL I+ Sbjct: 6 NVGKKIKFLRKEKKMNAKELAKDAGISYGMLSLLESGSTQGSVETLRKVAKVLGVTIAHL 65 Query: 74 FDVSPTVCSDISSEENNVMD 93 F + + SD+++ N+ + Sbjct: 66 F--TNSEDSDLATSPKNLDN 83 >gi|293378126|ref|ZP_06624295.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292642990|gb|EFF61131.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 180 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF + S+E++ + + +G +L Sbjct: 61 FFHQEAANLQVVYSKEDHTV-YFDEENGYEL 90 >gi|291542798|emb|CBL15908.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 117 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +GKRI++ R+ ++QEKL E +G++ + E G RV + + I+ L Sbjct: 8 IGKRIKIARIKADLTQEKLSEMVGVSPTHMSNVETGTTRVSLTTIVGIANALGI 61 >gi|223043812|ref|ZP_03613854.1| DNA-binding protein [Staphylococcus capitis SK14] gi|222442716|gb|EEE48819.1| DNA-binding protein [Staphylococcus capitis SK14] Length = 179 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I +QE+L E ++ + + E +I EVL + S Sbjct: 1 MDIGYKLRNLRRIKNFTQEELAERTDLSKGYISQIESQHASPSIETFLNILEVLGTSASD 60 Query: 73 FFDVSPTV 80 FF P+ Sbjct: 61 FFQERPSE 68 >gi|90592588|ref|YP_529848.1| putative transcriptional regulator [Lactobacillus phage KC5a] gi|89891917|gb|ABD78790.1| putative transcriptional regulator [Lactobacillus phage KC5a] Length = 117 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++ +LGE +G+ + +YE Q +++ P+ + + Sbjct: 3 NRLKELRHEKNLTLRELGEKVGMRNSTLSQYETNKREPKLDTWQKLADFFNVPVDYLLGI 62 Query: 77 SPT----VCSDISSEENNVMDFIST 97 S D+++EE + I+ Sbjct: 63 SKDRSTLTIDDLNAEEQEAYERITD 87 >gi|302879146|ref|YP_003847710.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581935|gb|ADL55946.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 117 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I RR L +Q +L E +G+ + V ++E+G N RL+ ++E L+ P+ Sbjct: 11 ANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYKLVAA 70 Query: 77 SPTVCSDIS 85 S D S Sbjct: 71 SSPRHDDQS 79 >gi|209901309|ref|YP_002290948.1| putative phage DNA-binding protein [Clostridium phage phiCD27] gi|199612190|gb|ACH91363.1| putative phage DNA-binding protein [Clostridium phage phiCD27] Length = 387 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+R++ R+ GM+ +L E + Q V YE ++ + + I++ L P+ FF Sbjct: 12 GERLKKARIYRGMTVAELAERIDCQRQTVSMYENNKSKPNDNNVVKRIAKELGFPVKFFL 71 Query: 75 DVSPTVC 81 + + Sbjct: 72 ETGNNIA 78 >gi|149916489|ref|ZP_01905006.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149809591|gb|EDM69447.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 435 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR++ G+ Q +L + +GI+ + E R+ L ++EVLE S Sbjct: 7 IGTRIRERRVMNGIRQSELAKMVGISPSYLNLIEHNRRRIAGKTLIKLAEVLEVEPSALS 66 Query: 75 DVSPTVCSDISSEEN 89 + + E Sbjct: 67 EGAEVTLIAALREAA 81 >gi|49478976|ref|YP_039343.1| transcription activator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140212|ref|YP_086619.1| transcriptional activator [Bacillus cereus E33L] gi|49330532|gb|AAT61178.1| transcription activator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973681|gb|AAU15231.1| transcriptional activator [Bacillus cereus E33L] Length = 285 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|83589109|ref|YP_429118.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572023|gb|ABC18575.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 81 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R+ G++Q +L +G+T EKG I+ L P+ F Sbjct: 5 LRRVRLQAGLTQSELARLVGLTRASYTNIEKGHKNPSVGTALRIARALNRPVEELFADES 64 Query: 79 TVCSDISSE 87 D+ SE Sbjct: 65 PAVQDVKSE 73 >gi|42784526|ref|NP_981773.1| transcriptional regulator PlcR, putative [Bacillus cereus ATCC 10987] gi|42740458|gb|AAS44381.1| transcriptional regulator PlcR, putative [Bacillus cereus ATCC 10987] Length = 285 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|327468544|gb|EGF14023.1| hypothetical protein HMPREF9386_1402 [Streptococcus sanguinis SK330] Length = 88 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDY 60 Query: 73 FFDVSPTVCS 82 V Sbjct: 61 LLKGIEPVVQ 70 >gi|308179920|ref|YP_003924048.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045411|gb|ADN97954.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 102 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R ++Q +L + L I+ + YE+G L I VL++ + Sbjct: 3 YFGDKLKSLRKAKKLTQVELAQQLDISKWAITSYEQGKTYPSIEVLIKICSVLDTSSDYL 62 Query: 74 FDVSP 78 +S Sbjct: 63 LGISD 67 >gi|293433433|ref|ZP_06661861.1| transcriptional regulator [Escherichia coli B088] gi|291324252|gb|EFE63674.1| transcriptional regulator [Escherichia coli B088] Length = 228 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+++ R GMSQ +L E +G++ Q V K E G + +++ I++VL + Sbjct: 6 ERLKIGREKAGMSQAQLAEKIGLSQQSVAKIENGET-LQPRKIKEIAKVLGVSQKWL 61 >gi|217077472|ref|YP_002335190.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] gi|217037327|gb|ACJ75849.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] Length = 177 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 7/123 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G +QE+L + ++ + + E L+ I VL S + Sbjct: 1 MKLGKKIKTLRIARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDLKT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI---QIDDVKVRQKIIELVRSIVSS 129 FF + V ++ + +I I+D + K+IEL + Sbjct: 61 FFSTDKRQEKIVFKASERVPMYLDEYG----IKGYILMDNIEDKSIDPKLIELAPGAETE 116 Query: 130 EKK 132 E+ Sbjct: 117 EED 119 >gi|168204476|ref|ZP_02630481.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] gi|170663962|gb|EDT16645.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] Length = 184 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ +G R++ R +S ++ E G++ + + E+G + S L I+ L+ Sbjct: 3 DLNLIIGNRLKTIRNNRNLSLSEVSEITGVSKAMLGQIERGQSNPTVSTLWKIANGLKVS 62 Query: 70 ISFFFDVSPT 79 S F D + Sbjct: 63 FSMFIDENKE 72 >gi|42519631|ref|NP_965561.1| hypothetical protein LJ1755 [Lactobacillus johnsonii NCC 533] gi|38731479|gb|AAR27403.1| hypothetical protein Ljo_1755 [Lactobacillus johnsonii NCC 533] gi|41583920|gb|AAS09527.1| hypothetical protein LJ_1755 [Lactobacillus johnsonii NCC 533] Length = 266 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 18 RIRLRRMILGMSQEKLG------ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R++ R +G +QE+L + L I+ + KYE GVN L+ +SE LE Sbjct: 5 RLKYIRKKMGFTQEELANYLQEVKHLKISRGTIAKYESGVNFPSKKTLKALSEALEVSED 64 Query: 72 FF 73 F Sbjct: 65 FL 66 >gi|258647029|ref|ZP_05734498.1| DNA-binding protein [Dialister invisus DSM 15470] gi|260404470|gb|EEW98017.1| DNA-binding protein [Dialister invisus DSM 15470] Length = 249 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 5 KKIPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K+ +D+ +GKRIR R MS +L + + + + KYE G + + L I Sbjct: 9 NKMEQKMDLPQILGKRIRYYRKQKHMSLRQLADIICKSVSTLSKYESGQIVLDITTLYDI 68 Query: 63 SEVLESPI 70 + P+ Sbjct: 69 AHAFHLPV 76 >gi|242240628|ref|YP_002988809.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242132685|gb|ACS86987.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 88 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ ++QEKLG GI + ++ YE G ++ + VL P + Sbjct: 4 KRLKAARLRANLTQEKLGVLAGIEEATAYSRLSHYENGTHKPTFELACEFARVLNVPECY 63 Query: 73 FFDVSPTVCSDI 84 F+ V D+ Sbjct: 64 FYIVDDEFAEDV 75 >gi|225570293|ref|ZP_03779318.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] gi|225160825|gb|EEG73444.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] Length = 262 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ + K+E G L+ IS+ + Sbjct: 66 EKLQKLRKSKNLTQEQLAEILSVSRTAISKWESGRGYPSIDSLKEISKFFTISLDDLLSS 125 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + + + + FI GL Sbjct: 126 EEILNAAQEDTDRKIHHFIDLTFGL 150 >gi|205374993|ref|ZP_03227784.1| XRE family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 292 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 9/106 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ IR R LG+ Q+ L + + T Q+ K E G++ ++ L IS+ L ++ Sbjct: 8 QIGQVIRELREALGLHQQDLCKGI-CTQSQLSKIENGISLPQSTTLYMISKRLGIDVNTL 66 Query: 74 FDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 F+ + T D E E + ++ D + I +V +R+K Sbjct: 67 FEYTTTSRMDYVLEVEALIRGYVRKKD-------YKSIREVVLREK 105 >gi|194467418|ref|ZP_03073405.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454454|gb|EDX43351.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 185 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ G++I RR LG++Q+ + L IT Q + K+E + L +SE+ + Sbjct: 1 MSFGEQILSRRKELGLTQQNVANELHITRQTLSKWENNKSYPDLKLLLALSEIYHVSVD 59 >gi|56421430|ref|YP_148748.1| hypothetical protein GK2895 [Geobacillus kaustophilus HTA426] gi|56381272|dbj|BAD77180.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 180 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++IR R ++ ++L E G++ + + E+G + + L+ I++ LE PI+ FF+ Sbjct: 6 RKIRDIRKQRDLTLKELSEKTGLSVSFLSQVERGTTSLAITSLKKIADALEVPITDFFE 64 >gi|325846936|ref|ZP_08169793.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481178|gb|EGC84222.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 241 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + +R M+Q+ + E L ++ Q V K+E+G + S L ++++L+ + + Sbjct: 10 GEFVCKKRKEKNMTQKDIAEKLYVSVQAVSKWERGKSLPDISLLMPLAKILDVKLVNLLE 69 Query: 76 VSPTVCSDISSEEN 89 D EN Sbjct: 70 SKEEKAEDSQKIEN 83 >gi|315033825|gb|EFT45757.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0017] Length = 65 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++++R LG +QE + +GI YE+G + ++++L + FF+ Sbjct: 8 LKIKREELGYTQESFAKKVGIAKTTYSSYEQGHRNPTVQTAKKMAKILNVSWTLFFE 64 >gi|312134484|ref|YP_004001822.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774535|gb|ADQ04022.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 143 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR+ R +SQ++L + L I+ Q + YEKG G + L +SE L+ I F Sbjct: 18 GLKIRILREEKRISQKELAKRLEISPQALANYEKGKRMPGINILVRLSEELDVSIDFLLG 77 Query: 76 VSP--TVCSDISSEENNVMDFISTPDGL 101 ++ S + E +++ I + + Sbjct: 78 LTDIRKPKSRMVKEHLEMLENIQEKEEI 105 >gi|331002826|ref|ZP_08326340.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413315|gb|EGG92683.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] Length = 104 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 IR R GM+Q +LGE +G+ Q + KYE+ + V LQ IS V E + + Sbjct: 4 IRKLRQSKGMTQRELGEVIGVKQQTICKYERANSNVSWDILQKISAVFEVSLDELIEED 62 >gi|300172749|ref|YP_003771914.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887127|emb|CBL91095.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] Length = 140 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I++ R +SQE++ + L ++ Q V +E+G S + +SE+ + + Sbjct: 1 MLIGEKIKIIREDRKISQEQMAKSLNVSGQAVSNWERGKGHPDISNIIRLSEIYDISLD 59 >gi|228986720|ref|ZP_04146850.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773051|gb|EEM21487.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 262 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEKSNE 71 >gi|229082960|ref|ZP_04215381.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2] gi|228700360|gb|EEL52925.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2] Length = 144 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G +++ R SQE + +G+T Q V K+E + L +S++ E I Sbjct: 3 NMKLGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTID 62 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 S D+ ++N+ + Sbjct: 63 ELIKGSGDAREDLDKKDNDECE 84 >gi|210610467|ref|ZP_03288424.1| hypothetical protein CLONEX_00614 [Clostridium nexile DSM 1787] gi|210152460|gb|EEA83466.1| hypothetical protein CLONEX_00614 [Clostridium nexile DSM 1787] Length = 110 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + + +G RI+ +R+ G++ L L IT QV + E+G + +L I ++L Sbjct: 12 ITDDIRKQIGWRIQEKRIEKGITAVDLSTYLNITANQVSRIERGCAGIDIYKLIVICKIL 71 Query: 67 ESPISF-FFDVSPTVCSDISSEENNVMDFIST 97 + F IS E+ ++ + + Sbjct: 72 GVSADYILFGEMKEENITISKEQFEAINGLIS 103 >gi|154501121|ref|ZP_02039159.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] gi|150269867|gb|EDM97399.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] Length = 89 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G RIR R G++QE+L E + ++ + K E G + + + + Sbjct: 9 GSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTGPVELAVEFAAFFDVSLDYL 66 >gi|114767315|ref|ZP_01446138.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114540568|gb|EAU43642.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 212 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R M+ +L + G++ + K E GV + LQ ++ L P+ Sbjct: 24 LEVAIGRQVRDLRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANALRVPL 83 Query: 71 SFFFDVSPTVCS 82 F Sbjct: 84 VQLFSGFEEPRG 95 >gi|83589146|ref|YP_429155.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572060|gb|ABC18612.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 128 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 11/119 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R +G++QE+L E + I+ + YE G L ++ L + F Sbjct: 1 MSIGKRIKELREKIGLTQEELAERVQISRSALANYESGYREPKGEILVRFAKALNTSTDF 60 Query: 73 FF--DVSPTVCSDIS-----SEENNVMDFIS--TPDGLQLN-RYFIQIDDVKVRQKIIE 121 +V +D + E + +S TP+G + R I++++ R++ +E Sbjct: 61 LLGNEVKVDKTNDKTKKYELDEATLLFARLSNLTPEGREKVLRELEWIEELE-RKRFLE 118 >gi|82750708|ref|YP_416449.1| transcriptional regulator [Staphylococcus aureus RF122] gi|82656239|emb|CAI80652.1| probable transcriptional regulator [Staphylococcus aureus RF122] Length = 179 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L + ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAKRTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENENVLYKKEEQVIYD 81 >gi|256811069|ref|YP_003128438.1| XRE family transcriptional regulator [Methanocaldococcus fervens AG86] gi|256794269|gb|ACV24938.1| transcriptional regulator, XRE family [Methanocaldococcus fervens AG86] Length = 64 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G++QE+L + LG+T Q + EKG I + + F++ Sbjct: 3 NRLRELRKEHGITQEELAKALGVTRQTIIAIEKGKYDPSLKLALKIVKFFGVKVEDVFEL 62 Query: 77 SP 78 Sbjct: 63 EE 64 >gi|239981788|ref|ZP_04704312.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] gi|291453649|ref|ZP_06593039.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] gi|291356598|gb|EFE83500.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] Length = 88 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PV + RI + R+ +++ +L + LG+ +Q + E+G I+ E Sbjct: 16 PDPV--H--NRIAMLRVERQVTRRQLADALGVHYQTIGYLERGEYSPSLHLALRIAAYFE 71 Query: 68 SPISFFFDVSP 78 P+ F F ++P Sbjct: 72 VPVEFIFSLTP 82 >gi|257054282|ref|YP_003132114.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256584154|gb|ACU95287.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 201 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 8/113 (7%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N V VG R+R R G++ +L G++ + + E G R L ++ V Sbjct: 5 TNDVLAAVGPRLRALRRHRGITLAELATATGVSESTLSRLESGQRRATLELLLPLARVYN 64 Query: 68 SPISFFFDVSPTVCS--DISSEENNVMDFI---STPDGLQLNRYFIQIDDVKV 115 P+ T ++ M F+ P G + F I + Sbjct: 65 VPLDDLVGAPRTGDPRVHLTPIHRFGMTFVPLSRRPGG---VQAFKMIIPARP 114 >gi|196041042|ref|ZP_03108339.1| putative transcriptional regulator PlcR [Bacillus cereus NVH0597-99] gi|196028210|gb|EDX66820.1| putative transcriptional regulator PlcR [Bacillus cereus NVH0597-99] Length = 285 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|19919304|gb|AAM08234.1| putative phage repressor [Legionella pneumophila] gi|307608914|emb|CBW98314.1| putative phage repressor [Legionella pneumophila 130b] Length = 227 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ + LGE G+ ++ +E+GV G ++ +++ L+ Sbjct: 6 IKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKLLAQALDVS 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ +S T + + ++ + + Sbjct: 66 PAYLMCLSDTQLHREAKNPSQLIPLLDYRQACE 98 >gi|59714374|ref|YP_207148.1| DNA-binding protein RDGA [Vibrio fischeri ES114] gi|59482651|gb|AAW88260.1| DNA-binding protein RDGA [Vibrio fischeri ES114] Length = 203 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R++ +R L SQ KL + + +T + ++E+ L ++EVL + + Sbjct: 2 KEISIRLKEKRKALRYSQRKLADLVNVTTSAISQWEREETTPKGEHLVRLAEVLNCTVQW 61 Query: 73 FFDVSPTVCS 82 +C Sbjct: 62 LVGTEDDICE 71 >gi|331268528|ref|YP_004395020.1| DNA-binding protein [Clostridium botulinum BKT015925] gi|329125078|gb|AEB75023.1| DNA-binding protein, putative [Clostridium botulinum BKT015925] Length = 185 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 6/92 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ G++Q L ++ + + E+ + + L I E L + + Sbjct: 7 MKIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKD 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF+ S E+ I + +LN Sbjct: 67 FFNDEEEEKIVFSKED------IFESEDSELN 92 >gi|319791791|ref|YP_004153431.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315594254|gb|ADU35320.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 206 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 1 MVGNKKIP--NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M + P ++ + +R+R R +S + L G++ + E+G + A Sbjct: 7 MTESTPAPATTSLNDRIAQRVRDLRASRSLSLDALATHCGVSRSMISLIERGESSPTAVL 66 Query: 59 LQHISEVLESPISFFFDVSPTVCSDIS 85 L+ ++ L P++ FD + V S +S Sbjct: 67 LEKLATGLGVPLASLFDDAEPVASPVS 93 >gi|297531429|ref|YP_003672704.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254681|gb|ADI28127.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 135 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 8/135 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G+ ++ R +QE+L E L ++ Q+ K+E G L+ + ++ F Sbjct: 2 ANLGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADF 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 T ++ E ++ + + L + + ++ + + L + + ++K Sbjct: 62 LL-GGETRQRELLREVTDMYGTADVHETV-LAALDYLLHNQEMSEAVYALAK-LPDKKRK 118 Query: 133 YR-----TIEEECMV 142 + TI +EC Sbjct: 119 HVETMIMTIVKECSE 133 >gi|255972572|ref|ZP_05423158.1| predicted protein [Enterococcus faecalis T1] gi|256762720|ref|ZP_05503300.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|257422398|ref|ZP_05599388.1| predicted protein [Enterococcus faecalis X98] gi|255963590|gb|EET96066.1| predicted protein [Enterococcus faecalis T1] gi|256683971|gb|EEU23666.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|257164222|gb|EEU94182.1| predicted protein [Enterococcus faecalis X98] Length = 253 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLES 68 +NVG+R++LRR L +S +K+ LG++ + +YEKG + ++ RL I+++L++ Sbjct: 12 MNVGERMKLRRKELNISADKIANELGVSRSTIFRYEKGDIEKLPTERLITIAKILKT 68 >gi|69245031|ref|ZP_00603189.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257879271|ref|ZP_05658924.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881911|ref|ZP_05661564.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257883903|ref|ZP_05663556.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257890099|ref|ZP_05669752.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257892889|ref|ZP_05672542.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|258615672|ref|ZP_05713442.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO] gi|260558717|ref|ZP_05830906.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|261208793|ref|ZP_05923230.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289566416|ref|ZP_06446843.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|293553978|ref|ZP_06674581.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|293563215|ref|ZP_06677668.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|293567490|ref|ZP_06678836.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|293573068|ref|ZP_06684008.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|294614455|ref|ZP_06694371.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|294617942|ref|ZP_06697547.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|294622380|ref|ZP_06701409.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|314937335|ref|ZP_07844675.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314940969|ref|ZP_07847872.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314949058|ref|ZP_07852420.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|314953462|ref|ZP_07856378.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994151|ref|ZP_07859458.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995961|ref|ZP_07861041.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|68196032|gb|EAN10464.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257813499|gb|EEV42257.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817569|gb|EEV44897.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257819741|gb|EEV46889.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257826459|gb|EEV53085.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257829268|gb|EEV55875.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|260075176|gb|EEW63489.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|260077295|gb|EEW65015.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289161791|gb|EFD09664.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|291589799|gb|EFF21601.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|291592763|gb|EFF24356.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|291595751|gb|EFF27039.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|291598140|gb|EFF29243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|291601861|gb|EFF32110.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|291604810|gb|EFF34291.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|291606861|gb|EFF36243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|313589837|gb|EFR68682.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591418|gb|EFR70263.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594495|gb|EFR73340.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313600201|gb|EFR79044.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313643286|gb|EFS07866.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313644535|gb|EFS09115.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 180 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF + S+E++ + + +G +L Sbjct: 61 FFHQEAANLQVVYSKEDHTV-YFDEENGYEL 90 >gi|323489112|ref|ZP_08094346.1| ans operon repressor protein [Planococcus donghaensis MPA1U2] gi|323397235|gb|EGA90047.1| ans operon repressor protein [Planococcus donghaensis MPA1U2] Length = 123 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R +S + L LGI V YE G +V S LQ +++ + + + Sbjct: 4 IGQKIRELREDHQLSVDDLASQLGIAKSVVWGYESGKKQVSVSHLQLLADYFKVTVDYIL 63 Query: 75 D 75 + Sbjct: 64 E 64 >gi|319946827|ref|ZP_08021061.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] gi|319746875|gb|EFV99134.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] Length = 295 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + ++ R +GMSQE L E +G++ Q V K+E G + IS + I Sbjct: 5 ENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISID 59 >gi|251789114|ref|YP_003003835.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537735|gb|ACT06356.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 92 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +R+R R +SQE+L GI+ + ++ YE G ++ + +++L+ P Sbjct: 2 VPQRLRAARERAKISQEELAIAAGISEDTGYSRMSHYENGRHKPKFELICTFAKILDVPE 61 Query: 71 SFFFDVSPTVCS 82 +F+ + + Sbjct: 62 GYFYMLDDSFAE 73 >gi|223985950|ref|ZP_03635985.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM 12042] gi|223962074|gb|EEF66551.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM 12042] Length = 94 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R M+Q++L + +G++ Q + + E+ + +I++V I FD Sbjct: 32 SKIHVYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSMLLVYNIAKVFGVTIEDLFDF 91 Query: 77 SP 78 Sbjct: 92 EE 93 >gi|126726075|ref|ZP_01741917.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126705279|gb|EBA04370.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 191 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G + L LG + + + E+ ++ L+ ++ L P+S FF Sbjct: 12 LGADLRALRKARGWTLSDLAGELGRSVGWLSQIERDLSEPSIGDLREMAAELNVPVSLFF 71 Query: 75 DVSPTVCSDIS 85 + T ++ Sbjct: 72 GQAETPAAETG 82 >gi|332830202|gb|EGK02830.1| hypothetical protein HMPREF9455_01080 [Dysgonomonas gadei ATCC BAA-286] Length = 80 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IPNP+ + ++ R++ G++QE+L E + + + + + E G IS VL Sbjct: 11 IPNPMPEFISH-LKEYRILAGLTQEELAEKVNVRRETIIRLEAGKYNPSLKLGIDISRVL 69 Query: 67 ESPISFFFD 75 ++PI F+ Sbjct: 70 KAPIEDIFE 78 >gi|315925909|ref|ZP_07922114.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620730|gb|EFV00706.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 188 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + + I+ R G+SQ++L L + Q V K+E+G++ + L ISEVLE+P+S Sbjct: 19 IMLSENIKTIRKSKGLSQDELAVKLNVVRQTVSKWERGLSVPDSEMLISISEVLETPVST 78 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 S E+ + + + L++ +Q+ K R + Sbjct: 79 LLGESIN--------ESEASELKAISEKLEVIN--LQLAQRKERSR 114 >gi|124010375|ref|ZP_01695021.1| transcriptional regulator [Microscilla marina ATCC 23134] gi|123983542|gb|EAY24007.1| transcriptional regulator [Microscilla marina ATCC 23134] Length = 121 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 11/114 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +IR R +SQ+++ L + Q K EKG + L+ I + L ++ Sbjct: 1 MDIGDKIRKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNVEVAE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 F S + D+ S + ++++ + + L D R+ I +++ S+ Sbjct: 61 LF-TSDKIFKDVESLDKSLVEKVQLLEQL----------DEGERKSIFQIIDSL 103 >gi|9634643|ref|NP_038317.1| ORF16 [Streptococcus phage 7201] gi|7248473|gb|AAF43509.1|AF145054_17 ORF16 [Streptococcus phage 7201] Length = 183 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFFFD 75 RI+ R ++Q +L + +G+T + + +EK G + A +LQ +++ E IS+ D Sbjct: 2 NRIKQLRKSRKLTQAELADLIGVTKRTIIHWEKYGFS--SADKLQELADCFEVSISYLLD 59 >gi|147668729|ref|YP_001213547.1| phage repressor like transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269677|gb|ABQ16669.1| phage repressor like transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 207 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESP 69 +DI +G +++ R+ GM+Q KL + G+T + E + L I+ L Sbjct: 1 MDIQIGLKVKQLRIARGMTQAKLADASGLTRGYISMLELRKSTMPSYEALSKIARALGVD 60 Query: 70 ISFFFDVSPTVCSDISSEE 88 I F P + S EE Sbjct: 61 IKEF-KTDPEIVRLESPEE 78 >gi|327473020|gb|EGF18447.1| hypothetical transcriptional regulator [Streptococcus sanguinis SK408] Length = 227 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ RR+ LG+ Q + E L ++ Q +EKG + L+ + +L+ P +F ++ Sbjct: 6 KLKNRRLKLGLRQVDIIEKLNVSKQAYSAWEKGKIKPSQDNLKKLETILKVPEGYFTELE 65 Query: 78 PTV 80 Sbjct: 66 IAT 68 >gi|312200628|ref|YP_004020689.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311231964|gb|ADP84819.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 202 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ RR LG+SQ++L E +G+ +Q+++YE + S ++E L + Sbjct: 5 MKRRRAELGLSQQQLAERVGVDRRQIRRYEADEQQPLLSVGLALAEALGVSAA 57 >gi|317054120|ref|YP_004118145.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952115|gb|ADU71589.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 199 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D NVG R+R R GM E++ E +G++ + + E+ V + + L + EV+ + Sbjct: 18 DFNVGIRLRAVRKARGMRIEEVAEKVGVSKSFISRLERNVTQASIATLLKVCEVVGITPA 77 Query: 72 FFFDVSPTV 80 FD T Sbjct: 78 KLFDPPSTS 86 >gi|229158911|ref|ZP_04286968.1| hypothetical protein bcere0010_50830 [Bacillus cereus ATCC 4342] gi|228624522|gb|EEK81292.1| hypothetical protein bcere0010_50830 [Bacillus cereus ATCC 4342] Length = 287 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|261344492|ref|ZP_05972136.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567400|gb|EFB72935.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 92 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G +I+ R + +++ + +GI Q +YEKG +R+ +L+ ++ Sbjct: 5 HTISEIIGHKIKFIRERKKLPLQEVADAVGIDEMQQIRYEKGQSRIPIDKLKQYADYFGI 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIS 96 + FF + I FIS Sbjct: 65 NMVTFFIFTEVEKKKIREHVKKTEKFIS 92 >gi|15922405|ref|NP_378074.1| transcriptional regulator [Sulfolobus tokodaii str. 7] gi|15623194|dbj|BAB67183.1| 515aa long hypothetical transcriptional regulator [Sulfolobus tokodaii str. 7] Length = 515 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +GKRI R G+S +L + GI+ + + E G S L I+ L Sbjct: 5 IGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGV 58 >gi|332637654|ref|ZP_08416517.1| hypothetical protein WcibK1_03097 [Weissella cibaria KACC 11862] Length = 70 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R + G++Q++L +G+T Q + EKG I+ L++ ++ F Sbjct: 5 VRKYRTLKGLTQKELANAIGVTRQTIALIEKGTYNPTMKLAIAIATQLDTDLNSLF 60 >gi|325261431|ref|ZP_08128169.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032885|gb|EGB94162.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 95 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ GK+I+ R +Q++L G+ + YE G L +S + + Sbjct: 2 VDFGKKIKQLRKEYNFTQKQLASLAGVAVSAISAYEAGNRYPSYDVLISLSRIFHVSTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + D+S + + ++ + Sbjct: 62 LLGLEKMEVVDVSGLDEHEVEVVR 85 >gi|291551015|emb|CBL27277.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 209 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDKRE 85 >gi|257886679|ref|ZP_05666332.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257895254|ref|ZP_05674907.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257897876|ref|ZP_05677529.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] gi|257822733|gb|EEV49665.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257831819|gb|EEV58240.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257835788|gb|EEV60862.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] Length = 180 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF + S+E++ + + +G +L Sbjct: 61 FFHQEAANLQVVYSKEDHTV-YFDEENGYEL 90 >gi|238025512|ref|YP_002909744.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237880177|gb|ACR32509.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 193 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 9/127 (7%) Query: 1 MVGNKKIPNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + + P + V G +IR R L + ++ GI+ + + E+G+ + Sbjct: 1 MVASTENTQPRNAAVELGSKIRALRQRLKRTLDETASAAGISKPFLSQVERGLASPSITS 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L I++ L + +F + S E+ F + F ++ +V ++ Sbjct: 61 LAGIAQALGVNVQYFVETPSEERSVCRGEQLRFFSFADS------ANLFARLTNVSAGRQ 114 Query: 119 IIE-LVR 124 + LVR Sbjct: 115 LEAILVR 121 >gi|254507617|ref|ZP_05119750.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus 16] gi|219549504|gb|EED26496.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus 16] Length = 103 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 9/92 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLE 67 D + R++ R ++Q++LG +G+ ++ YEKG + L+ I+E L+ Sbjct: 4 DNPIPARLKAARKKAKITQKELGVKIGMEESSASGRMNHYEKGRHVPDIGTLRRIAEELD 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 P+++FF +++S+E +D +S + Sbjct: 64 VPLNYFF-----CDNELSAELACTIDRMSDEE 90 >gi|139438005|ref|ZP_01771558.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] gi|133776202|gb|EBA40022.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] Length = 238 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G SQE L LG++ Q V K+E+ + L ++++ + + Sbjct: 7 QRLADLRRSKGFSQEGLARKLGLSRQAVSKWERAESSPDTENLISLAKLYGVSLDELLNP 66 Query: 77 SPTVCSDISSEENN 90 S + DI E + Sbjct: 67 SDEIEDDIEFENED 80 >gi|118472815|ref|YP_890484.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118174102|gb|ABK74998.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G++ ++ +GI+ + K E S L +++ L+ P++ F Sbjct: 33 IGRNVRQLRQQHGLTVAEMAARVGISKAMMSKIENAQTSCSLSTLALLAKGLDVPVTSLF 92 Query: 75 DVSPTVCSDISSEENNVMDFIS--TPDGLQ 102 + + + + T G + Sbjct: 93 RGADVERPAAFVKAGTGPEIVRNGTKQGHE 122 >gi|331268935|ref|YP_004395427.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum BKT015925] gi|329125485|gb|AEB75430.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum BKT015925] Length = 432 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR LGM+ + L IT Q+ E G + L++++ L I + Sbjct: 6 LGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANSLNISIEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + T I + N+ + + L L +I Sbjct: 65 ESEETQAEKICTYYENISESHIFNNQLNLAEQYI 98 >gi|220928331|ref|YP_002505240.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998659|gb|ACL75260.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 179 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 6/91 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R+ G++QE+L ++ + + E+ + + L I E L + I Sbjct: 1 MKIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLMDILESLGTNIKD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF+ S ++ + D + T + L Sbjct: 61 FFNES------VNEKVVFKKDDVFTKEDRDL 85 >gi|254420808|ref|ZP_05034532.1| hypothetical protein BBAL3_3118 [Brevundimonas sp. BAL3] gi|196186985|gb|EDX81961.1| hypothetical protein BBAL3_3118 [Brevundimonas sp. BAL3] Length = 65 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++L R+ G +QE+LG+ LG++ Q V E + I+ + P+ F+ Sbjct: 3 NRLKLLRVERGWTQEQLGQALGVSRQAVIALETERHDPSLDLAYRIAAAFDRPVEEIFE 61 >gi|167757416|ref|ZP_02429543.1| hypothetical protein CLORAM_02966 [Clostridium ramosum DSM 1402] gi|167703591|gb|EDS18170.1| hypothetical protein CLORAM_02966 [Clostridium ramosum DSM 1402] Length = 129 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + +G+RI+ R+ + +++ + LG + Q + KYE V + + +++ ++ + + Sbjct: 1 MTIGERIKNLRLKNNYTLDEIADKLGTSRQTIFKYENNIVTNIPSDKIEKLALIFNVSPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + D E NV + P+ L+L + +I + + + + + Sbjct: 61 YIMGWENSQLGDY---EENVEYLKNQPELLEL---YKEILKNDQLAILFDKAKKLEPKDL 114 Query: 132 KYR 134 + Sbjct: 115 EQI 117 >gi|149919009|ref|ZP_01907494.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149820162|gb|EDM79581.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 125 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ +P G+ IR R G++QE L E G++ V+ E G L+ + Sbjct: 4 KQRSDPEARRFGRHIRALRSERGLTQELLAERSGLSADSVRSLENGKFSPSRGTLRKLCT 63 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L+ +S FF + T E+ ++D + T +L R I VR+ I +L Sbjct: 64 GLDLQMSTFFLLYETGGRRG---EHELLDLLRTRSPAEL-RALTAI----VRELIAQL 113 >gi|116510851|ref|YP_808067.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116106505|gb|ABJ71645.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 107 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ R + +SQE+L + L I+ Q + K+E G + +L +SE+ + + Sbjct: 1 MEISEIIKENRKLKNLSQEELAKELHISRQSILKWETGKSLPTTDQLILLSEIFDCSLDT 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + E ++ Sbjct: 61 LLKGDKKMEEKVKHEIDD 78 >gi|148652624|ref|YP_001279717.1| bifunctional HTH-domain containing protein/aminotransferase [Psychrobacter sp. PRwf-1] gi|148571708|gb|ABQ93767.1| aminotransferase [Psychrobacter sp. PRwf-1] Length = 543 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R+ R G++ E+L + ++ + +E+G+N + +S+L ++ +L Sbjct: 11 GARLSKLRKAKGLTAEQLATAMTASGSKVSRGAISNWERGINGIVSSKLPALAHILGCSE 70 Query: 71 SFFFDVSPTVCSDISSE 87 + P ++ + Sbjct: 71 GYLLRGEPADNAEPDNS 87 >gi|25012010|ref|NP_736405.1| hypothetical protein gbs1972 [Streptococcus agalactiae NEM316] gi|76787285|ref|YP_330541.1| transcriptional regulator [Streptococcus agalactiae A909] gi|24413553|emb|CAD47631.1| Unknown [Streptococcus agalactiae NEM316] gi|76562342|gb|ABA44926.1| transcriptional regulator, putative [Streptococcus agalactiae A909] Length = 164 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+R R + ++Q ++ LG+ YE+ + S L+ I+ + I + D Sbjct: 5 KRLRELRQLNNITQIEMANKLGLNRVTYTNYEREKSEPSISTLKEIATIFNVSIDYLIDF 64 Query: 77 SPTVCS 82 Sbjct: 65 EDDTKG 70 >gi|312109406|ref|YP_003987722.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|311214507|gb|ADP73111.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 139 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 4/132 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++++ R +QE+L + L I+ Q+ K+E G L+ +S + E I F Sbjct: 5 RKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGELLPDVQSLEKLSNLYEVSIDF 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG-LQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 T ++ E N + + L + YF Q + + + I L + K Sbjct: 65 LI-GKHTTKKELLREMNLLYQTDRIDEKMLDIIDYFKQ--NPDMEEMIYSLAQLPAKKRK 121 Query: 132 KYRTIEEECMVE 143 TI + E Sbjct: 122 HLETIIITLIQE 133 >gi|225419983|ref|ZP_03762286.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] gi|225041375|gb|EEG51621.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] Length = 151 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +G RI+ R MSQ++L + G + + K E G+N V S+++ I+E L + Sbjct: 14 IEIGNRIKQLRTEKDMSQDELAKRSGYGSRSTINKIELGINDVPQSKIKAIAEALGVSVG 73 >gi|210610577|ref|ZP_03288503.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787] gi|210152436|gb|EEA83442.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787] Length = 147 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 26/57 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 I +G RIR R G SQE L E G++ + + E G + LQ I + L Sbjct: 25 IMLGNRIREYRKERGFSQEILAEKSGVSTNTISRIEGGQMAMSVGILQRIVKALGVD 81 >gi|324327531|gb|ADY22791.1| helix-turn-helix domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 262 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 ETAEKSNE 71 >gi|323463235|gb|ADX75388.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 190 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++VG +IR+ R +SQ L E + ++ Q + +E L +S + + Sbjct: 1 MDVGNQIRIYRKERQLSQMALAEKIDVSTQTISNWENERTYPDLYHLIVLSSLFNVSLD 59 >gi|322834164|ref|YP_004214191.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169365|gb|ADW75064.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 184 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + R++ R G+S E+L G++ + K E+ + AS L ++ L Sbjct: 2 SIDQLIATRLQALRKSQGLSLEQLASSSGVSKAMISKIERQDSSPSASLLGRLAASLGVS 61 Query: 70 IS 71 ++ Sbjct: 62 LA 63 >gi|262283189|ref|ZP_06060956.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262261441|gb|EEY80140.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 135 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 35/79 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R + GM+QE + E L ++ Q + +E + +S++ E + Sbjct: 1 MEIGKKLKEARQLSGMTQESVAEELNVSRQTISNWETEKFYPDILYVLQLSDLYEVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 ++ + + V Sbjct: 61 LLKGDESMIQHLEESTDTV 79 >gi|238027937|ref|YP_002912168.1| hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] gi|237877131|gb|ACR29464.1| Hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] Length = 125 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+R+ R G +Q L + LG+ + V + E G + RL +VL+ PI Sbjct: 17 IGQRLAAVRRARGWTQAVLADKLGLEKESVSRLESGKVAISIERLVMFCDVLDVPI 72 >gi|251800099|ref|YP_003014830.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547725|gb|ACT04744.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 150 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G++++ R G Q++L E L ++ Q V K+E N + IS++ I Sbjct: 4 GEKLKAMRQSKGWPQDELAEKLFVSRQSVSKWENNQNYPSIEIIIKISDLFGVTID 59 >gi|328464227|gb|EGF35672.1| transcriptional regulator xre family protein [Lactobacillus rhamnosus MTCC 5462] Length = 236 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 11/114 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++QE L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + D + + + ++ L + F +V I L+R Sbjct: 61 ------DQLMAYDAQLQPSEIRRIYTS-----LKQAFETQPPARVLTSIRNLIR 103 >gi|323140942|ref|ZP_08075855.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414680|gb|EFY05486.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 78 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG--VNRVGASRLQHISEVLESPISF 72 + +I R + M+QEKL + +GIT Q + + E G V S L I+E L +S Sbjct: 9 ICAKIVFYRKLKSMTQEKLADEVGITPQYLSRIENGGYTKCVSLSTLMKIAEKLGITMSE 68 Query: 73 FFDVSPTVC 81 + Sbjct: 69 LMEGVEDTS 77 >gi|296450733|ref|ZP_06892486.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296260577|gb|EFH07419.1| XRE family transcriptional regulator [Clostridium difficile NAP08] Length = 130 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 17/113 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFF 73 VG+RI++ R G++QE L + ++ V E+G+ I+ LE S Sbjct: 32 VGQRIKMAREAKGLTQEDLAAMVELSPTHVSVIERGLKAAKLDTFVAIANALEVSADSLL 91 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 DV + +++E + ++ + + ++KII+ VR++ Sbjct: 92 IDVVAHSVTGVTNELSEMIGKLPKEE----------------QKKIIKAVRAL 128 >gi|291541388|emb|CBL14498.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 280 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R+ R + +SQE+L +G++ Q V K+E+ L ++++ + Sbjct: 7 NRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEASPDTDNLILLADIYGVSLD 61 >gi|289706453|ref|ZP_06502809.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] gi|289556824|gb|EFD50159.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] Length = 91 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R R G+SQEKL E + + ++ YE G + + I+ VL P + Sbjct: 4 KRLRDARKNAGISQEKLAELVDVEGINIRSRISSYEVGRVEPSFNLMVKIAAVLNYPECY 63 Query: 73 FFDVSPTVCSDISS 86 F+ + + I Sbjct: 64 FYTIDDALAQTILE 77 >gi|284989132|ref|YP_003407686.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062377|gb|ADB73315.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 90 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI L R G+++ +L + LG+ +Q V E+G I+E P+ F Sbjct: 12 NRIALLRAEQGVTRRELADALGVHYQTVGYLERGEYNPSLHLALRIAEFFGLPVEVVFST 71 Query: 77 SP-TVCSDISSEENNVMD 93 P SD + E Sbjct: 72 RPFPRISDAGTPEPPAAA 89 >gi|284008336|emb|CBA74713.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 131 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG RIR R GM+ +L + + + E+ + L I+ L ++ Sbjct: 1 MNVGTRIRELRKKKGMTILQLATAINSDVGNISRLERNKQGYSENTLLKIASALGVQVAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F S + + + + S ++L + + + + ++ I E+ Sbjct: 61 LFLDSSETNNASRNNKQKYSNLKSDQ--IELLELYDSLPEEEAKRFIKEM 108 >gi|254496262|ref|ZP_05109155.1| irep [Legionella drancourtii LLAP12] gi|254354519|gb|EET13161.1| irep [Legionella drancourtii LLAP12] Length = 89 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ G+SQ++LG G+ ++ +YE G + S L+ I+ +L P ++ Sbjct: 8 KRLKEARIAAGLSQKQLGISAGVDEFSASPRINQYETGKHAPDFSTLKRIALILAVPTAY 67 Query: 73 FFDVSPTVCS 82 F+ + Sbjct: 68 FYAEEDELAQ 77 >gi|226328474|ref|ZP_03803992.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] gi|225203207|gb|EEG85561.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] Length = 102 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+RI+ +R L ++ ++G LGI+ Q + E G ++ +L IS +L Sbjct: 8 VGQRIKQKRKQLKLTGIEMGRRLGISQQHYSRLENGHIKITVDQLITISYILGISP 63 >gi|218906529|ref|YP_002454363.1| putative transcriptional regulator PlcR [Bacillus cereus AH820] gi|228917959|ref|ZP_04081495.1| hypothetical protein bthur0012_51600 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930359|ref|ZP_04093363.1| hypothetical protein bthur0010_50380 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936635|ref|ZP_04099429.1| hypothetical protein bthur0009_50700 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229094464|ref|ZP_04225534.1| hypothetical protein bcere0021_51680 [Bacillus cereus Rock3-42] gi|229124854|ref|ZP_04254032.1| hypothetical protein bcere0016_51340 [Bacillus cereus 95/8201] gi|218535283|gb|ACK87681.1| putative transcriptional regulator PlcR [Bacillus cereus AH820] gi|228658645|gb|EEL14307.1| hypothetical protein bcere0016_51340 [Bacillus cereus 95/8201] gi|228688928|gb|EEL42757.1| hypothetical protein bcere0021_51680 [Bacillus cereus Rock3-42] gi|228823070|gb|EEM68908.1| hypothetical protein bthur0009_50700 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829345|gb|EEM74978.1| hypothetical protein bthur0010_50380 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841756|gb|EEM86867.1| hypothetical protein bthur0012_51600 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 285 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|331646783|ref|ZP_08347886.1| putative helix-turn-helix-containing protein [Escherichia coli M605] gi|331045535|gb|EGI17662.1| putative helix-turn-helix-containing protein [Escherichia coli M605] Length = 86 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +RL R L + Q + + +G+T Q K+E G N AS ++ +SE+L Sbjct: 6 LRLNREKLKLKQSDIADYVGVTTQTYMKWENGKNEPKASHIKKLSEILNV 55 >gi|312141280|ref|YP_004008616.1| transcriptional regulator [Rhodococcus equi 103S] gi|325673887|ref|ZP_08153577.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311890619|emb|CBH49937.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555152|gb|EGD24824.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 215 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 7 IPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P VD+ + ++R R+ G+S + +GI+ + K E S L ++ Sbjct: 21 TPTGVDLERVIATQVRKLRLASGLSVGDMAAKVGISKAMLSKIENAQTSCSLSTLARLAA 80 Query: 65 VLESPISFFFDVSPTVCSDISSEENN 90 L+ P++ F + + + E + Sbjct: 81 GLDVPVTSLFRGADSTRDAVFVEAGS 106 >gi|257791280|ref|YP_003181886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475177|gb|ACV55497.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 139 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 27/71 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R GM+Q +L E G T ++ YE G + S L I+ L Sbjct: 4 GSRIRALRESRGMTQRQLAERAGCTDAAIRNYEAGRRALKGSALDAIAGALGVAPEALMP 63 Query: 76 VSPTVCSDISS 86 V D Sbjct: 64 VQAESVRDALE 74 >gi|237734947|ref|ZP_04565428.1| predicted protein [Mollicutes bacterium D7] gi|229381723|gb|EEO31814.1| predicted protein [Coprobacillus sp. D7] Length = 264 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 14/109 (12%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI R LG +Q++LG + ++ + V K+E+G+ S L +SE L+ I Sbjct: 3 NKEIGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMSID 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ D SE+ V + I + +I ++ +++II Sbjct: 63 ---ELIGGTVVDK-SEKKTVQNLI----------NYTKIKAIENKERII 97 >gi|167755197|ref|ZP_02427324.1| hypothetical protein CLORAM_00702 [Clostridium ramosum DSM 1402] gi|167705247|gb|EDS19826.1| hypothetical protein CLORAM_00702 [Clostridium ramosum DSM 1402] Length = 264 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 14/109 (12%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI R LG +Q++LG + ++ + V K+E+G+ S L +SE L+ I Sbjct: 3 NKEIGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMSID 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ D SE+ V + I + +I ++ +++II Sbjct: 63 ---ELIGGTVVDK-SEKKTVQNLI----------NYTKIKAIENKERII 97 >gi|154503571|ref|ZP_02040631.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260589920|ref|ZP_05855833.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795671|gb|EDN78091.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260539727|gb|EEX20296.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 128 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF-FDV 76 IR +R LG+SQ +L E LG + Q + + EK G+ + + L ++++ PI ++ Sbjct: 12 IRKKRKELGISQSELSEKLGTSQQTISRIEKAGIENIPCNLLIKLADIFHVPIDILIYEE 71 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + S E + + + L ++ + +V Sbjct: 72 QNNLFSSQGEELWEIYKQLDEANKTTLLTLGRRLSEAQV 110 >gi|187479415|ref|YP_787440.1| transcriptional regulator [Bordetella avium 197N] gi|115424002|emb|CAJ50555.1| putative transcriptional regulator [Bordetella avium 197N] Length = 111 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 12/107 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFDV 76 R+R R G +Q++L E G+T + YE G + AS + ++EVL + Sbjct: 7 RLRTARNTRGWTQKELAELSGLTPSAIGNYESGQRAQASASAMLKLAEVLGVSPGWLAQG 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + ++Q+ + R+++ L+ Sbjct: 67 DSPAPPPPAPWPFPSVPYSR----------YLQLK-PQQRRQLEALI 102 >gi|58040192|ref|YP_192156.1| hypothetical protein GOX1761 [Gluconobacter oxydans 621H] gi|58002606|gb|AAW61500.1| Hypothetical protein GOX1761 [Gluconobacter oxydans 621H] Length = 203 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RIRL R + G+SQ++L + +GI+ V +E G + L +++VL Sbjct: 81 LELGRRIRLLREMAGLSQQQLADKVGISRSAVAFWETGRSGHVGKHLGSLAQVLGV 136 >gi|15614377|ref|NP_242680.1| hypothetical protein BH1814 [Bacillus halodurans C-125] gi|10174432|dbj|BAB05533.1| BH1814 [Bacillus halodurans C-125] Length = 297 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R LG+SQ L E + T + EK +I++ L +P +F Sbjct: 6 VGHKIKTLRQSLGLSQRDLAEGI-CTQALISHIEKNKTTPTVDVFFNIAKKLGAPADYFL 64 Query: 75 DV 76 + Sbjct: 65 ET 66 >gi|47569775|ref|ZP_00240447.1| transcription regulator PlcR, probable, putative [Bacillus cereus G9241] gi|34452031|gb|AAQ72482.1| transcriptional regulator PlcR [Bacillus cereus] gi|37650522|emb|CAE47450.1| PlcR protein [Bacillus thuringiensis serovar roskildiensis] gi|47553571|gb|EAL11950.1| transcription regulator PlcR, probable, putative [Bacillus cereus G9241] Length = 287 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|329116131|ref|ZP_08244848.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020] gi|326906536|gb|EGE53450.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020] Length = 230 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK+++ R MSQE+LG+ LG+ + +EK N L + + E+ +F Sbjct: 4 GKQLKKIRQQHKMSQEQLGQELGVNKMTISNWEKDKNSPNQKHLNALVSIFETDQDYF 61 >gi|157829815|pdb|1ADR|A Chain A, Determination Of The Nuclear Magnetic Resonance Structure Of The Dna-Binding Domain Of The P22 C2 Repressor (1-76) In Solution And Comparison With The Dna-Binding Domain Of The 434 Repressor Length = 76 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 Query: 76 VS 77 Sbjct: 67 GD 68 >gi|146300090|ref|YP_001194681.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154508|gb|ABQ05362.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 135 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 32/145 (22%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---- 69 ++G++I R + M QE L + LG Q + E + +L I++ L Sbjct: 9 HIGRKISRIRELRDMKQEALAQALGTNQQAISILENSET-IDEDKLIAIAKALGVTAEAI 67 Query: 70 --------ISFF--FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I++F F+ S + ++ N +D +L F ++ K Sbjct: 68 KNFSEEGVINYFNTFNDSDNNFNSYNTCTFNPLD--------KLVESF---EENKK---- 112 Query: 120 IELVRSIVSSEKKYRTIEEECMVEQ 144 L ++ SEK E+ + E+ Sbjct: 113 --LYERLLQSEKDKIEYLEKLLKEK 135 >gi|91787335|ref|YP_548287.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91696560|gb|ABE43389.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 227 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 42/81 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+++R RR LG+ +++ GI+ + + E+G+ + L +S L+ P+ Sbjct: 38 IDLWLGEQVRHRRKALGLPLQQVALGCGISVSLLSQIERGLRSISLRTLAALSNELQLPL 97 Query: 71 SFFFDVSPTVCSDISSEENNV 91 + ++ +SE + V Sbjct: 98 ETLIRNTQHDQNEGASERSVV 118 >gi|51247424|pdb|1SQ8|A Chain A, A Variant 434 Repressor Dna Binding Domain Devoid Of Hydroxyl Groups, Nmr, 20 Structures Length = 64 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RR+ LG++Q +L + +G+ Q +++ E G + L ++ L + + Sbjct: 1 MLMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAK-RPRFLPELARALGVAVDW 59 Query: 73 FFDVS 77 + + Sbjct: 60 LLNGA 64 >gi|89073167|ref|ZP_01159706.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|89051120|gb|EAR56577.1| transcriptional regulator, putative [Photobacterium sp. SKA34] Length = 106 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ++LG +GI ++ +YEKG + S L+ +++ L P+++F Sbjct: 10 RLKEIRKKTKISQKELGIRIGIDESSASARMNQYEKGKHTPDISTLKKMADELGVPLNYF 69 Query: 74 F 74 F Sbjct: 70 F 70 >gi|294500115|ref|YP_003563815.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350052|gb|ADE70381.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 181 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R G+S +L + IT + + E+G+ S L+ +++ L+ P Sbjct: 3 NIDIGKKVEKFRKAKGLSSRELAKLAEITPSMLSQIERGLANPSISTLKILAKCLDVPTF 62 Query: 72 FF 73 F Sbjct: 63 SF 64 >gi|228904583|ref|ZP_04068659.1| hypothetical protein bthur0014_57190 [Bacillus thuringiensis IBL 4222] gi|228855064|gb|EEM99647.1| hypothetical protein bthur0014_57190 [Bacillus thuringiensis IBL 4222] Length = 394 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++L R MS L E L I+ Q + KYEK ++ G + + VL P F+F+ Sbjct: 8 GERLKLARRFNAMSLLDLAEKLSISKQMISKYEKNISPPGGEIMLQLEGVLGFPRKFYFE 67 Query: 76 VS 77 Sbjct: 68 DD 69 >gi|256830616|ref|YP_003159344.1| helix-turn-helix domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579792|gb|ACU90928.1| helix-turn-helix domain protein [Desulfomicrobium baculatum DSM 4028] Length = 355 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R +S L E +G++ + K+EK + L + +VL +FF Sbjct: 2 IGERLQRARKAADLSLRNLAEQVGVSHTWINKFEKDQAMPDSKTLLKLGKVLGVRSEYFF 61 Query: 75 DVSPTVCSDIS 85 S + Sbjct: 62 RPEQVTLSQVE 72 >gi|255316576|ref|ZP_05358159.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 120 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 1/91 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI++ R+ G++QE + + IT + E G +V L I+ L I Sbjct: 8 LGKRIKIARIKKGITQESIANEIDITPSHLSNVETGKTKVSLPTLIDIANALSINIDSLL 67 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D E V D + L Sbjct: 68 CDNILNSKVVFEGEAKEVFDDCDEYEIRMLV 98 >gi|154499890|ref|ZP_02037928.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] gi|150271488|gb|EDM98745.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] Length = 451 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K++P+ I G I R GM+Q++L LGI+ + V K+E+G + + + Sbjct: 30 KEVPHMDSIRTGSFIASLRREKGMTQKELASLLGISDKAVSKWERGESYPEITLFPALGA 89 Query: 65 VLESPISFFFDVSPTVCSDISSEEN 89 L + + E Sbjct: 90 TLGVTADELMAGERQPHTPTEAPEP 114 >gi|42520147|ref|NP_966062.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409884|gb|AAS13996.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 215 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 13/117 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R++ G +Q L +G+T+Q+V YE G + L I+ VL Sbjct: 16 IGQKIENCRLMRGHTQIGLAGQVGLTYQEVNSYENGYTPIPIGVLYVIARVLSVNAVDLL 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 TV +E + L L + + ++ K+ + + LVR + SEK Sbjct: 76 PKLITVREYKDEDE----------EILYLTKIY---ENQKLGKIVPSLVRFVHISEK 119 Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 23/38 (60%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ 45 + + +G+RIR R+I +QE L +G+T +++Q Sbjct: 163 TDSIYYRIGQRIREWRLIKRYTQEDLANKVGLTLKEIQ 200 >gi|49188185|ref|YP_031438.1| transcriptional regulator, PlcR [Bacillus anthracis str. Sterne] gi|65317329|ref|ZP_00390288.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|227818114|ref|YP_002818123.1| putative transcriptional regulator PlcR [Bacillus anthracis str. CDC 684] gi|254687207|ref|ZP_05151065.1| putative transcriptional regulator PlcR [Bacillus anthracis str. CNEVA-9066] gi|254724706|ref|ZP_05186489.1| putative transcriptional regulator PlcR [Bacillus anthracis str. A1055] gi|254735504|ref|ZP_05193212.1| putative transcriptional regulator PlcR [Bacillus anthracis str. Western North America USA6153] gi|254742264|ref|ZP_05199951.1| putative transcriptional regulator PlcR [Bacillus anthracis str. Kruger B] gi|254755821|ref|ZP_05207853.1| putative transcriptional regulator PlcR [Bacillus anthracis str. Vollum] gi|254762161|ref|ZP_05214007.1| putative transcriptional regulator PlcR [Bacillus anthracis str. Australia 94] gi|5305716|gb|AAD41786.1|AF132086_1 PlcR [Bacillus anthracis] gi|37652843|emb|CAE51351.1| PlcR protein [Bacillus anthracis] gi|49182112|gb|AAT57488.1| transcriptional regulator, PlcR [Bacillus anthracis str. Sterne] gi|227003000|gb|ACP12743.1| putative transcriptional regulator PlcR [Bacillus anthracis str. CDC 684] Length = 213 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|296110469|ref|YP_003620850.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] gi|295832000|gb|ADG39881.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] Length = 103 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G++++ R ++Q +L + L ++ + YE+G++ L I E+L + + Sbjct: 5 FFGEKLKAVRKSKNLTQLELSKRLEVSKGTISAYEQGLSYPSLETLVKICEILNTSSDYL 64 Query: 74 FDVSPTV----CSDISSEENNVMDFISTPD 99 +S + S + N+V+ FI+T + Sbjct: 65 LSLSDNLTFKMGGLTSEQMNSVLQFIATIE 94 >gi|291449844|ref|ZP_06589234.1| regulatory protein [Streptomyces albus J1074] gi|291352793|gb|EFE79695.1| regulatory protein [Streptomyces albus J1074] Length = 202 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 8/110 (7%) Query: 1 MVGNKKIPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M P D VG R+R R G + L GI+ + + E G R Sbjct: 1 MPEPTPPPADTDTVLAGVGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLE 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEE-----NNVMDFISTPDGLQ 102 L I+ + P+ P + E V+ P GLQ Sbjct: 61 LLLPIAAAHDVPLDRLVGAPPAGDPRVRLEPIEQGNRTVIPLSRRPGGLQ 110 >gi|219854874|ref|YP_002471996.1| hypothetical protein CKR_1531 [Clostridium kluyveri NBRC 12016] gi|219568598|dbj|BAH06582.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 257 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 19/117 (16%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---- 73 R+R R ++Q + L +T + KYE G + L+ +S+ I + Sbjct: 56 RLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYLIGVT 115 Query: 74 ---------------FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 F ++ S +E + ++ P+ L N +F +I+D + Sbjct: 116 NIKKVESNYLSRIPIFQITKNHPSLFIAENISGYEYFDKPEELSKNYFFFKIEDNSM 172 >gi|196231108|ref|ZP_03129968.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196224938|gb|EDY19448.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 224 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 4/95 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ +R LGMSQE+L + G+ V E+G+ V ++ ++ L + F+ Sbjct: 11 GTTIKSKRSELGMSQEELADRAGLHRTYVSDVERGMRNVSLISIEKLAHALGLSVWRLFE 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN-RYFIQ 109 + + ++ ++ P+ ++L R F + Sbjct: 71 ---QASNGTAPDQLEILLVEDEPNDIELTQRAFKR 102 >gi|126735190|ref|ZP_01750936.1| DNA-binding protein, putative [Roseobacter sp. CCS2] gi|126715745|gb|EBA12610.1| DNA-binding protein, putative [Roseobacter sp. CCS2] Length = 128 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+ Q+ L E LG+ +Q +E+ + A+RLQ +S ++ +S+ Sbjct: 16 GDRLAGAREAAGLDQKGLAEKLGVKPAVIQAWEEDLKEPRANRLQMVSGIVGVSMSWLLT 75 Query: 76 VS---PTVCSDISSEENNVMDFISTPDGLQ 102 P D N+++D ++ L+ Sbjct: 76 GEGDGPEAPDDDGPMSNDLVDLLAEMRALR 105 >gi|157369784|ref|YP_001477773.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157321548|gb|ABV40645.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 103 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ G+SQEKLG GI ++ +YEKG + +++VL P S+ Sbjct: 4 KRLKEARLKAGLSQEKLGILAGIDEASASARMNQYEKGKHTPDFEMACSLAKVLGIPESY 63 Query: 73 FF 74 F+ Sbjct: 64 FY 65 >gi|58039039|ref|YP_191003.1| aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] gi|58001453|gb|AAW60347.1| Aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] Length = 180 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R +SQ +L + G+T + E G L+ I + + + Sbjct: 1 MDLGARLRFVRTARNLSQRELAKRTGVTNSTISLIESGDMNPSVGTLKRILDGIPVTLGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 FF ++P I + +M F Sbjct: 61 FFSIAPEGGEKIFYRADELMTF 82 >gi|3915849|sp|P16117|RPC1_BP434 RecName: Full=Repressor protein CI gi|14987|emb|CAA68301.1| unnamed protein product [Phage 434] Length = 95 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 73 FFDVSPTV 80 + + Sbjct: 60 LLNGTSDS 67 >gi|325526296|gb|EGD03907.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 132 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I +R G++Q KL E + + + + ++E+G RLQ +S+ L+ + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALDCSVDQLL 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 D + + + + + +L F+Q Sbjct: 81 QRGSKRPDDQLAMIADALSGLDGDE-RELVVNFVQ 114 >gi|317484142|ref|ZP_07943072.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924646|gb|EFV45802.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 108 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K N VD+ G R+R +SQ + +G++ ++ Y + + L I+ Sbjct: 5 KPENVVDVLFGNRLRQLLDERNISQAHFADRIGVSRSRMNNYVAQRSEPDYATLIRIANT 64 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 L++ I F S ++ + DFI + Sbjct: 65 LDTTIDFLLGKSEHQGLPQTACLSGFPDFIPSRGA 99 >gi|257063361|ref|YP_003143033.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791014|gb|ACV21684.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 256 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 10 PVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 PVD GK I+ R ++Q ++ +G+T + V K+E+G A + + L Sbjct: 2 PVDRAGFGKTIQALRKHASVTQGEVASRVGVTDKAVSKWERGEALPAAESFAALGKALNV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST 97 P F+ + + + Sbjct: 62 PALVLFEAMEPESEQGQAARALPQAALLS 90 >gi|226324082|ref|ZP_03799600.1| hypothetical protein COPCOM_01860 [Coprococcus comes ATCC 27758] gi|225207631|gb|EEG89985.1| hypothetical protein COPCOM_01860 [Coprococcus comes ATCC 27758] Length = 209 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDKRE 85 >gi|206976223|ref|ZP_03237132.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] gi|206745677|gb|EDZ57075.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] Length = 119 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+ IRL R G++QE+L E + + + E+G + LQ I++ LE Sbjct: 6 KLVGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIADGLEVSPDL 65 Query: 73 FFDVSPTVCSDISSEENN---VMDFISTPDGLQL 103 ++ D E + + + + +L Sbjct: 66 VLNIGNINLIDNPQREESLSIITSLLHQKNTDEL 99 >gi|329894642|ref|ZP_08270447.1| Transcriptional regulator [gamma proteobacterium IMCC3088] gi|328922898|gb|EGG30227.1| Transcriptional regulator [gamma proteobacterium IMCC3088] Length = 68 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR +R LG++Q+ L +G++ Q + E G S +S V + P+ F Sbjct: 3 NNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDPSLSLAFKLSGVFKEPVEALF 60 >gi|325522655|gb|EGD01175.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 193 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 12/131 (9%) Query: 1 MVGNKKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + P D +G +IR R L + ++ GI+ + + E+G+ + Sbjct: 1 MVPPTENPRSADAAAALGSKIRALRQRLKRTLDETATVAGISKPFLSQVERGLASPSLTS 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP----------DGLQLNRYFI 108 L I++ L + +F D S E+ F + +G QL + Sbjct: 61 LAGIAQALGVTVQYFVDTPSEERSVCRGEQLRFFGFADSANLFARLTNVTEGRQLEAILV 120 Query: 109 QIDDVKVRQKI 119 ++ + R ++ Sbjct: 121 RMPPGQKRSEV 131 >gi|319938757|ref|ZP_08013121.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811807|gb|EFW08073.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 135 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 35/79 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R + G++QE + E L ++ Q + +E + +S++ + + Sbjct: 1 MEIGRKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + + N V Sbjct: 61 LLKGDERMIQHLENSTNVV 79 >gi|300856826|ref|YP_003781810.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436941|gb|ADK16708.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 314 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 33/85 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R + ++Q+KL + +G++ + E L ++++ + + + Sbjct: 2 LGDKIKDLRKLKKITQQKLAKSIGLSQSSIGMIESNKQGASNETLVKLAKLFDVTVDYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 +E I+ + Sbjct: 62 GTDEIENIGYIIKEEREYQGITQKE 86 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R G++Q++L + +GI ++ KYE + + I+ + F Sbjct: 68 NIGYIIKEEREYQGITQKELSDAVGINENELAKYENNEAPISQFLAKKIANFFDMSFPAF 127 >gi|302557707|ref|ZP_07310049.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] gi|302475325|gb|EFL38418.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] Length = 509 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E L + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQTQLAEALNTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|254819794|ref|ZP_05224795.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950] Length = 471 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 18/133 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI + V + +S G L R + + R+ I Sbjct: 65 SSQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKKYR 134 + ++E+++ Sbjct: 119 TAQLAAATEERFS 131 >gi|223986619|ref|ZP_03636613.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] gi|223961414|gb|EEF65932.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] Length = 400 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 GKRI R ++Q++L + L +T + + ++E+G + L +++ L Sbjct: 7 GKRIAQLRKARNLTQQQLADQLNVTNRAISRWERGEGYPEITLLPKLADSLGV 59 >gi|210624086|ref|ZP_03294186.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] gi|210153219|gb|EEA84225.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] Length = 158 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K + ++G+ ++ R M+QE + E +G++ Q V K+E GV+ S L +++ Sbjct: 85 RKEKTIIRKSLGEVLKSHREKNHMTQEFVAEAIGVSRQAVSKWENGVSDPSTSNLIALAK 144 Query: 65 VLESPI 70 + Sbjct: 145 LFNMSP 150 >gi|189465237|ref|ZP_03014022.1| hypothetical protein BACINT_01582 [Bacteroides intestinalis DSM 17393] gi|189437511|gb|EDV06496.1| hypothetical protein BACINT_01582 [Bacteroides intestinalis DSM 17393] Length = 191 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L E G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKSLRESQSISIEQLAERSGLAVEQIERIENNIDLPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCSDI--SSEENNVMDF 94 D I +E + + F Sbjct: 67 DDQDETGPAICRKTESKDTISF 88 >gi|149201921|ref|ZP_01878895.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149144969|gb|EDM32998.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 129 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Query: 4 NKKIPNP--VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ N D G+R+R R G+ Q++L E G+ + +EKG + L++ Sbjct: 10 DTEMSNDETTDNLFGRRLRAARTERGLEQQQLAEKAGLPPSSISHFEKGARKPSFDNLRN 69 Query: 62 ISEVLESPISFF 73 +++ L+ + Sbjct: 70 LAKSLDVTTDYL 81 >gi|254254750|ref|ZP_04948067.1| DNA-binding protein [Burkholderia dolosa AUO158] gi|124899395|gb|EAY71238.1| DNA-binding protein [Burkholderia dolosa AUO158] Length = 201 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 12/131 (9%) Query: 1 MVGNKKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + + P D +G +IR R L + ++ GI+ + + E+G+ + Sbjct: 9 MVPSTENSRPADAAAALGGKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTS 68 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFI 108 L I+ L + +F D S E+ F + +G QL + Sbjct: 69 LAGIAHALGVTVQYFVDTPSEERSVCRGEQLRFFGFADSANLFARLTNVSEGRQLEAILV 128 Query: 109 QIDDVKVRQKI 119 ++ + R ++ Sbjct: 129 RMPPGQKRSEV 139 >gi|118468644|ref|YP_885309.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118169931|gb|ABK70827.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 478 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 7/128 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRSERGFSQAALAQMLDISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFIST----PDGLQLNRYFIQIDDVKV---RQKIIELVRSI 126 T E D ++ + + ++ V R+ + + Sbjct: 65 SPQDDTRLVAELREVTLDRDLGASDVDLTEVADMVASHPKLARAMVNLHRRYRLATTQLA 124 Query: 127 VSSEKKYR 134 ++E +Y Sbjct: 125 AATEDRYS 132 >gi|148548133|ref|YP_001268235.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512191|gb|ABQ79051.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 114 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P ++G+++ R+ ++Q ++GE L I+ + V + E+G + S+L ++++ Sbjct: 4 KEPSPH--HIGRQLAKYRLARHLTQTQVGEHLQISGEAVSRLERGFVELSVSKLLQLADL 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 P D+ + N+++ + D Sbjct: 62 YGCPADELLLAISPRPQDLGVQINSIIKELDEAD 95 >gi|330974510|gb|EGH74576.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 189 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 33/134 (24%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + P PV +V + +R R +SQ L E G++ + + E G V + L + Sbjct: 4 ENSQRP-PVLQHVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRV 62 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD------VKVR 116 +E LE S D I P+ NR + +I++ + Sbjct: 63 AEALEVAFS---------------------DLIQAPE----NRDYSRINELAWAGTIAGS 97 Query: 117 QKIIELVRSIVSSE 130 + ++ L R++ E Sbjct: 98 KAVL-LARAVARRE 110 >gi|262043413|ref|ZP_06016538.1| HTH-type transcriptional regulator RdgA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039239|gb|EEW40385.1| HTH-type transcriptional regulator RdgA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 70 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR-LQHISEVLESPIS 71 + + R++ RR L M+Q L E G++ Q + + E GV + R L IS L+ + Sbjct: 1 MTLATRVKERRKELNMTQVALAELTGVSQQAINRIESGV--ISRPRYLLEISAALQCDPN 58 Query: 72 FFFDVSPT 79 + PT Sbjct: 59 WLLHGQPT 66 >gi|212704791|ref|ZP_03312919.1| hypothetical protein DESPIG_02855 [Desulfovibrio piger ATCC 29098] gi|212671753|gb|EEB32236.1| hypothetical protein DESPIG_02855 [Desulfovibrio piger ATCC 29098] Length = 193 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R MSQE LGI+ + YE+G N A + I + +S+ Sbjct: 4 LGERIRHVRG--RMSQEAFAGLLGISKGALGGYERGENCPNADVVLTICNKCQINVSWLM 61 Query: 75 DV-SPTVCSDISSEEN 89 D + EE+ Sbjct: 62 SGVGSMHAPDGTGEED 77 >gi|191636942|ref|YP_001986108.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|190711244|emb|CAQ65250.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|327380969|gb|AEA52445.1| hypothetical protein LC2W_0109 [Lactobacillus casei LC2W] gi|327384145|gb|AEA55619.1| hypothetical protein LCBD_0119 [Lactobacillus casei BD-II] Length = 373 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++Q+ L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISAHRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 S 71 Sbjct: 61 D 61 >gi|83589152|ref|YP_429161.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572066|gb|ABC18618.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 101 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 16/114 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q +L + G++ + + E G L I + ++ Sbjct: 1 MTLGNRLKELREKHHLTQYRLAKLSGVSQSHISEIESGDKEPTTGTLMKICSAMGLTLAE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 FF + S ++ + + L RQK+IE ++SI Sbjct: 61 FF------TEETPSLPPDLRQILKEAESLT----------PGQRQKLIEFLKSI 98 >gi|325288089|ref|YP_004263879.1| helix-turn-helix domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323543|gb|ADY31008.1| helix-turn-helix domain protein [Cellulophaga lytica DSM 7489] Length = 257 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + IR R + G++Q+ L LGIT +V YE+G + L +S+ + PI Sbjct: 2 IFIATNIRHLRSLKGVTQQSLAIDLGITRARVSSYEEGRSAPTIETLIQLSDYFKLPIDV 61 Query: 73 FFDVSPTVCSDIS 85 + +D S Sbjct: 62 LVRNDLSKATDAS 74 >gi|251778801|ref|ZP_04821721.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083116|gb|EES49006.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 179 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR+ RM ++QE+L ++ + + E + + L I E+L + ++ Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 73 FFDVSPTV 80 FF + Sbjct: 61 FFSETKEE 68 >gi|302873538|ref|YP_003842171.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307688282|ref|ZP_07630728.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302576395|gb|ADL50407.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 296 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 2/106 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G +Q++L LGI V YE+G +L ++++ E + + Sbjct: 7 NRIKDLRKNNGYTQKELSSLLGIGQTTVANYEQGTRIPDTEKLNKMADLFEVTLDYLLGR 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + ++ +D S + Y ++ D K R+ I+ L Sbjct: 67 NEKISPSNKEVKSKTIDLKSANETY--LEYLLKGDSKKARKFILSL 110 >gi|229099941|ref|ZP_04230863.1| hypothetical protein bcere0020_51580 [Bacillus cereus Rock3-29] gi|228683486|gb|EEL37442.1| hypothetical protein bcere0020_51580 [Bacillus cereus Rock3-29] Length = 60 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R+ L MSQE L +G+ + + E G I++VLE+PI F Sbjct: 1 MKEYRVKLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLEAPIETLF 56 >gi|166367802|ref|YP_001660075.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843] gi|166090175|dbj|BAG04883.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843] Length = 73 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN--RVGASRLQHISEVLESPI 70 + +G+R++ R G++Q KL E LG+T Q V +E G R+ S+ + + L + Sbjct: 1 MELGQRMQKLRENAGLTQRKLAERLGVTVQTVSNWETGHREPRMNPSQTLKLCQSLNCSL 60 Query: 71 S 71 + Sbjct: 61 A 61 >gi|118465480|ref|YP_883812.1| DNA-binding protein [Mycobacterium avium 104] gi|254777121|ref|ZP_05218637.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118166767|gb|ABK67664.1| DNA-binding protein [Mycobacterium avium 104] Length = 474 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 18/131 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T DI + V + +S G L R + + R+ I Sbjct: 65 SSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSAHPG--LARAVVNL----HRRYRIT 118 Query: 122 LVRSIVSSEKK 132 + ++E++ Sbjct: 119 TAQLAAATEER 129 >gi|307129578|ref|YP_003881594.1| hypothetical protein Dda3937_01732 [Dickeya dadantii 3937] gi|306527107|gb|ADM97037.1| hypothetical protein Dda3937_01732 [Dickeya dadantii 3937] Length = 100 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR++L R+ G++Q +LG G+ ++ +YE+ VN + + VL+ P Sbjct: 2 IGKRLKLARVNAGLTQLELGCRAGLDEETASSRISQYEREVNEPDFGLVCQFAAVLDVPE 61 Query: 71 SFFFDVSPTVC 81 ++F+ + Sbjct: 62 AYFYARDEELA 72 >gi|295401476|ref|ZP_06811446.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976526|gb|EFG52134.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 179 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+IR R ++ ++L E G++ + + E+G + + L+ I++ LE PI+ FF+ Sbjct: 6 KKIRDLRKQRDLTLKELSEKTGLSISFLSQVERGSTSLAITSLKKIADALEVPITDFFEN 65 Query: 77 SP 78 Sbjct: 66 EE 67 >gi|291302787|ref|YP_003514065.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572007|gb|ADD44972.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 503 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GKRIR R GM+ + GE +G Q+ E G S L+ ++ L Sbjct: 33 ISLGKRIRHLRKQRGMTLDAFGEAIGTAPSQLSMIENGKREPKLSMLRALARELGVSSDE 92 Query: 73 FFDVSPT 79 P Sbjct: 93 LLRTEPP 99 >gi|229550962|ref|ZP_04439687.1| XRE family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258538327|ref|YP_003172826.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229315677|gb|EEN81650.1| XRE family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257150003|emb|CAR88975.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 373 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 11/114 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++QE L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + D + + + ++ L + F +V I L+R Sbjct: 61 ------DQLMAYDAQLQPSEIRRIYTS-----LKQAFETQPPARVLTSIRNLIR 103 >gi|227535271|ref|ZP_03965320.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187155|gb|EEI67222.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 192 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N V+ +G I+ R ++Q+ L +G Q + K E+GV + + Sbjct: 25 MRANMNKEKIVESKIGLHIKQLRKAQRITQKDLAAEIGTIEQTISKIERGVFTLSVETIM 84 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 L + +P + I + + Sbjct: 85 QFCNALNVTPNELRIDNPRCKNGILIDSS 113 >gi|168765271|ref|ZP_02790278.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|168798579|ref|ZP_02823586.1| repressor protein CI [Escherichia coli O157:H7 str. EC508] gi|217327029|ref|ZP_03443112.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588] gi|189364926|gb|EDU83342.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|189378869|gb|EDU97285.1| repressor protein CI [Escherichia coli O157:H7 str. EC508] gi|217319396|gb|EEC27821.1| repressor protein CI [Escherichia coli O157:H7 str. TW14588] gi|315274298|gb|ADU03706.1| repressor protein CI [Enterobacteria phage VT2phi_272] gi|326340128|gb|EGD63932.1| repressor protein CI [Escherichia coli O157:H7 str. 1125] Length = 237 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%) Query: 17 KRIR----LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ ++ LG+SQE L LG+T V + G+N + AS ++++L + Sbjct: 17 KRLKSIFNAKKKELGLSQESLAYELGVTQSAVNQLMAGINAINASHAAQLAKILNVKVGD 76 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 F SP++ I+ + + ++ Sbjct: 77 F---SPSLAKSIAEMALAIEEPLT 97 >gi|15669353|ref|NP_248158.1| hypothetical protein MJ_1164 [Methanocaldococcus jannaschii DSM 2661] gi|24418741|sp|Q58564|Y1164_METJA RecName: Full=Putative HTH-type transcriptional regulatory protein MJ1164 gi|1591790|gb|AAB99166.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 318 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 9/90 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP----IS 71 GK ++ R +G+S KL E G++ + + KYE + I E L+ P I Sbjct: 128 GKVLKEVREAMGISVGKLAEVAGVSRKAIYKYETQMANPSVDVALKIEEFLDVPLVKGID 187 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL 101 F P D+ ++ N+ DF + + Sbjct: 188 LF---EPVDDEDVENKLENLEDF--KKEAI 212 >gi|163941533|ref|YP_001646417.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863730|gb|ABY44789.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 123 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 6/101 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R ++ + LG+ L + + YE G + L ++ E + Sbjct: 2 IGENLRKLRKTNNLTMKDLGKKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYL- 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +S++N + ++ P L +F I D Sbjct: 61 --LGRDVAKNTSKDNEAYNPLADP---DLGLWFKDIKDASP 96 >gi|326381819|ref|ZP_08203512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199245|gb|EGD56426.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 125 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 8/96 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-------VGASRLQHISEVLES 68 G R+ R G+SQE+L E G+ V E+ + S + ++ LE Sbjct: 19 GHRLVTVRKARGLSQEELAERCGLHRNAVSNLERATSNSASGIADPLLSTVYRLARALEV 78 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 P ++ + + + + E +S + L Sbjct: 79 PPTYLMPGADSRIG-LRAAEQETNQALSEVEAELLA 113 >gi|315223214|ref|ZP_07865075.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315187646|gb|EFU21400.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 135 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 34/79 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R + G++QE + E L ++ Q + +E + +S++ + + Sbjct: 1 MEIGKKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + N V Sbjct: 61 LLKGYERMIQHLEDSTNVV 79 >gi|242278893|ref|YP_002991022.1| XRE family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242121787|gb|ACS79483.1| transcriptional regulator, XRE family [Desulfovibrio salexigens DSM 2638] Length = 107 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 36/79 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG +IR R G++Q +LG + + + + E+G +++ L I+ L+ P+ Sbjct: 4 ISKLVGNKIRSIRKKRGLTQAQLGNESDLNDKYISEIERGSSKLTVDALNKIANGLKVPV 63 Query: 71 SFFFDVSPTVCSDISSEEN 89 D + E++ Sbjct: 64 KDILDFDTAQPTREELEKD 82 >gi|210621225|ref|ZP_03292531.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] gi|210154836|gb|EEA85842.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] Length = 118 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 +++ R G+SQE+LG LG++ Q + K+E G + +L +S+ + Sbjct: 5 EKLIELRKAKGLSQEELGNELGVSRQTISKWELGQSYPDFQKLVLLSDFFNISLDKLIKD 64 Query: 74 FDVSPTVCSDISSE--ENNVMDFISTPDGLQ-LNRYFIQI 110 D+ ++ S E DF + L L +F I Sbjct: 65 IDLDDVRENNQSDEKVSKMYEDFQTAKTALNYLLNFFAFI 104 >gi|167757513|ref|ZP_02429640.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402] gi|237735075|ref|ZP_04565556.1| predicted protein [Mollicutes bacterium D7] gi|167702510|gb|EDS17089.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402] gi|229381851|gb|EEO31942.1| predicted protein [Coprobacillus sp. D7] Length = 153 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 38/81 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++ R G SQ+++ + L ++ Q + +E + ++++ + Sbjct: 2 LGEKLMRLRKKQGYSQQEVADKLSVSRQTISNWECDQALPAVDKAMELAQLYNISLDDLM 61 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + + S+ +++ +++ ++ Sbjct: 62 ENEIEIVSNNKTKDLHLLQYL 82 >gi|315651375|ref|ZP_07904400.1| HicB family toxin-antitoxin system [Eubacterium saburreum DSM 3986] gi|315486334|gb|EFU76691.1| HicB family toxin-antitoxin system [Eubacterium saburreum DSM 3986] Length = 91 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I R LG+SQ +LG+ +G++ + K E G ISE L I FD+ Sbjct: 3 NKIEKYRKPLGLSQHRLGKKVGVSRVSINKIETGKVIPSLKLDHDISEALGVCIYKIFDL 62 Query: 77 SPTVCS 82 S Sbjct: 63 DGKETS 68 >gi|290509145|ref|ZP_06548516.1| conserved hypothetical DNA-binding protein [Klebsiella sp. 1_1_55] gi|289778539|gb|EFD86536.1| conserved hypothetical DNA-binding protein [Klebsiella sp. 1_1_55] Length = 200 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I N V+ V +RI+ R +S ++L G++ + + E + L Sbjct: 8 MTDANAIVNTVNEAVSQRIKQYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSIALLC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ + ++ F DVS + +E+ + G Sbjct: 68 RLATAMGVSVADFVDVSSKPTVHLIAEDEIPELWEGEKGGRA 109 >gi|288935075|ref|YP_003439134.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|288889784|gb|ADC58102.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 200 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I N V+ V +RI+ R +S ++L G++ + + E + L Sbjct: 8 MTDANAIVNTVNEAVSQRIKQYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSIALLC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ + ++ F DVS + +E+ + G Sbjct: 68 RLATAMGVSVADFVDVSSKPTVHLIAEDEIPELWEGEKGGRA 109 >gi|251788781|ref|YP_003003502.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537402|gb|ACT06023.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + V +G+R+++ R+ G+SQE E G+ + E+GV L ++ Sbjct: 2 KTSDSVKTLLGQRVKMLRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATG 61 Query: 66 LESPISFFF 74 L + ++ F Sbjct: 62 LHTDLTTLF 70 >gi|229078339|ref|ZP_04210903.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2] gi|228705014|gb|EEL57436.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2] Length = 149 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 7 LKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRGDE 66 Query: 79 TVCSDISSEENNVM 92 + + + + Sbjct: 67 ELTQKVIEDSKQLA 80 >gi|225571153|ref|ZP_03780151.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] gi|225159984|gb|EEG72603.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] Length = 134 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--- 71 +G R++ R+ G++QE+L E ++ + + E G +L +++++ + Sbjct: 28 IGFRVKQARLNAGLTQEELAEKANMSSSFISRLENGKILPSIKKLLMLADIMNVGLEDLL 87 Query: 72 -FFFDVSPTVCSDISSEENNVMDFISTPD 99 FF + ++ + +D ++ P+ Sbjct: 88 RDFFRHTGEPSDALTEQIFYQVDMMTVPE 116 >gi|210621162|ref|ZP_03292504.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM 13275] gi|210154899|gb|EEA85905.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM 13275] Length = 199 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R ++QE+L E L ++ + K+E G S L+ ISEV + I Sbjct: 5 EKLQYFRKKSNLTQEELAEKLFVSRTAISKWESGRGMPSISSLKAISEVFDVSID 59 >gi|254976736|ref|ZP_05273208.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255094120|ref|ZP_05323598.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255315871|ref|ZP_05357454.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255518532|ref|ZP_05386208.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255651651|ref|ZP_05398553.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|260684688|ref|YP_003215973.1| putative phage repressor [Clostridium difficile CD196] gi|260688346|ref|YP_003219480.1| putative phage repressor [Clostridium difficile R20291] gi|306521453|ref|ZP_07407800.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|260210851|emb|CBA65951.1| putative phage repressor [Clostridium difficile CD196] gi|260214363|emb|CBE06745.1| putative phage repressor [Clostridium difficile R20291] Length = 163 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G++I+ R + MS+ +L +G + + KYE+ ++ IS L I Sbjct: 2 INNTIGEKIKQYRKSINMSRNELANKIGCSVHAIAKYEQNQRIPSLDMIRKISTALSIAI 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDF-ISTPDGLQLN 104 + +D+ + NN ++ + + L L Sbjct: 62 N----KLIVEENDLDTLTNNNINLKVFDKE-LDLV 91 >gi|313884124|ref|ZP_07817890.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312620571|gb|EFR31994.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 138 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 41/86 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++G+ I RR LGM+Q L +G+T + V K+E+ ++ S + +++E L+ + Sbjct: 3 DDSLGRLIANRRKELGMTQLDLARRMGVTDKAVSKWERDLSFPDLSSIPNLAETLDYSLV 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 V E ++ I T Sbjct: 63 DLMQVKEKTGKPQKVAEKPIITLILT 88 >gi|308271699|emb|CBX28307.1| hypothetical protein N47_G36310 [uncultured Desulfobacterium sp.] Length = 373 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 14/105 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFFDV 76 R+++ R G+SQ +L +GI Q V E G S ++++L + F+ Sbjct: 12 RLKVIRQSAGISQIQLASLVGIKRQAVYDIECGKYVPNTSVALQMAKILGCKVEDLFYHN 71 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P +IS + ++ +P+ +I VK+R +++ Sbjct: 72 LPERTDNISLADKSI-----SPN--------NRISVVKIRDRLVA 103 >gi|295691909|ref|YP_003600519.1| transcriptional regulator [Lactobacillus crispatus ST1] gi|295030015|emb|CBL49494.1| Transcriptional regulator [Lactobacillus crispatus ST1] Length = 272 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 12/110 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R L ++Q ++ + I+ K EKG NR+ L I ++ + Sbjct: 1 MTIGEALKKLRQSLELTQAQMIQGSKISITHYSKMEKGQNRIFVDDLMLILQLHGVSPAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQKII 120 FF D IS+ +LNR F + I K QK+I Sbjct: 61 FFKEYFPTKEDT----------ISSKISQELNRSFYKNDIKKAKELQKLI 100 >gi|148556374|ref|YP_001263956.1| hypothetical protein Swit_3472 [Sphingomonas wittichii RW1] gi|148501564|gb|ABQ69818.1| protein of unknown function DUF955 [Sphingomonas wittichii RW1] Length = 355 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ L R M+ L +G++ + + E G N + + ++ L+ P +FFF Sbjct: 5 QRLILGRKRRKMTARSLAGAIGVSPITISRLENGANEPESDTVDALAAALDFPRAFFF-A 63 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + + +S + Sbjct: 64 EDVDELPAGAASFRSLSSMSAKE 86 >gi|161525013|ref|YP_001580025.1| putative phage repressor [Burkholderia multivorans ATCC 17616] gi|160342442|gb|ABX15528.1| putative phage repressor [Burkholderia multivorans ATCC 17616] Length = 270 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Query: 9 NPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + + + +R+R R +SQ +L G++ + E G N+ G+ L I+ Sbjct: 19 HHYNRHMRSLAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQ-GSKHLLSIARA 77 Query: 66 LESPISFFF-DVSPTVCSDISSEENNVM 92 L ++ + P S ++ + + Sbjct: 78 LGVNPAWLESESGPKDASAAAAPQPGIY 105 >gi|332360443|gb|EGJ38254.1| cro/CI family zinc-binding transcriptional regulator [Streptococcus sanguinis SK355] Length = 377 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R+ G+++++L E GI+ Q + YE G GAS+L I L+ P ++F Sbjct: 9 SKLTKARIARGLTKKELAERTGISRQMISNYELGKTHPGASKLMTIVAELDFPYTYF 65 >gi|315453658|ref|YP_004073928.1| hypothetical protein HFELIS_12540 [Helicobacter felis ATCC 49179] gi|315132710|emb|CBY83338.1| putative uncharacterized protein [Helicobacter felis ATCC 49179] Length = 206 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF 73 ++++ R ++QE+L G++ Q +++YE + + L+ ++ L + + FF Sbjct: 4 EKLKQLRNANNLTQEELALKCGVSLQSIKRYESEQKSNITLDTLEKLANALNTDLHFF 61 >gi|331685806|ref|ZP_08386387.1| transcriptional regulator, Cro/CI family [Escherichia coli H299] gi|324014328|gb|EGB83547.1| helix-turn-helix protein [Escherichia coli MS 60-1] gi|331077003|gb|EGI48220.1| transcriptional regulator, Cro/CI family [Escherichia coli H299] Length = 228 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R GMSQ +L E +G++ Q V K E G + +++ I++VL + Sbjct: 6 ERLKSEREKAGMSQAQLAEKIGLSQQSVAKIENGETQ-QPRKIKEIAKVLGVSQKWL 61 >gi|302390463|ref|YP_003826284.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] gi|302201091|gb|ADL08661.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] Length = 181 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I R G++ ++L E G++ + + E G + + + L+ I++ L PI+ FF Sbjct: 5 IAEKISKLRKQKGLTLKELSEMTGLSVSFLSQVENGYSSLAITSLKKIADALNVPITEFF 64 Query: 75 DVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQ 109 I E V + + + L+ F + Sbjct: 65 SSYHNHSYHIKLSEQKVFKIEGNSAEYVLLSGEFPK 100 >gi|296166113|ref|ZP_06848558.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898522|gb|EFG78083.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 191 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D+ V +R+R RM GM+ +++G GI + + E G R+ L ++ Sbjct: 4 KTAPDIDLQVRRRLRELRMQRGMTLQEVGAIAGIDISTLSRLESGKRRLALDHLPRLARA 63 Query: 66 LESP 69 L Sbjct: 64 LSVS 67 >gi|291537327|emb|CBL10439.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 138 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 38/74 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ RR L ++Q ++ E GI+ + E+G A+ L +SE+L+ I + Sbjct: 8 IGKRIKKRRKELHLTQTEIKEKTGISSGNMSDIERGNRLPAATTLAQLSEILDCSIDWIL 67 Query: 75 DVSPTVCSDISSEE 88 V ++ S + Sbjct: 68 TGKSPVSENLISPD 81 >gi|229819917|ref|YP_002881443.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565830|gb|ACQ79681.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 195 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G++ +L E GI+ + + E G + L ++ V P+ Sbjct: 14 VGPRLRALRHERGLTLSELAERTGISTSTLSRLESGGRKPTLELLLPLARVHGVPLDDLV 73 Query: 75 DVSPT 79 PT Sbjct: 74 GAPPT 78 >gi|212696814|ref|ZP_03304942.1| hypothetical protein ANHYDRO_01377 [Anaerococcus hydrogenalis DSM 7454] gi|212676104|gb|EEB35711.1| hypothetical protein ANHYDRO_01377 [Anaerococcus hydrogenalis DSM 7454] Length = 217 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 RI+ +R LG + E++G+ +G+T +Q+YE G + + + +++ ++ L + ++ Sbjct: 6 RIKYKRNQLGKTLEEVGQKVGVTKATIQRYENGNIQNIPSDKIELLAAALNTTPAYLM 63 >gi|254463197|ref|ZP_05076613.1| helix-turn-helix domain protein [Rhodobacterales bacterium HTCC2083] gi|206679786|gb|EDZ44273.1| helix-turn-helix domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 454 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+I GM Q L I+ + E R+G L I+ VL+ S Sbjct: 4 DTLTGSRIRERRLIQGMKQADLARRTEISASYLNLIEHNRRRIGGKLLLSIAAVLDVEAS 63 Query: 72 FFFDVSPTV 80 + + Sbjct: 64 ALSEGAEAA 72 >gi|167767917|ref|ZP_02439970.1| hypothetical protein CLOSS21_02459 [Clostridium sp. SS2/1] gi|167710246|gb|EDS20825.1| hypothetical protein CLOSS21_02459 [Clostridium sp. SS2/1] Length = 146 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VG+RI+L R GMSQ + ++ Q + KYE + + + +++ ++++ + Sbjct: 4 MTVGERIQLLRKKTGMSQIDFATKINVSKQTLYKYENNLITNIPSDKIEAVADLCHVSPA 63 Query: 72 FFF 74 + Sbjct: 64 YLM 66 >gi|167630842|ref|YP_001681341.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167593582|gb|ABZ85330.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 272 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+R R LG++Q ++ E G++ + + E+G + ++ ++E + +F Sbjct: 134 IATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKVQPSLRTIERVAEAVGVTPCYFL 193 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELV--------R 124 P++ + + ++++ + P Q R +++ ++R ++ L+ R Sbjct: 194 VPQPSLENLLPVLGDDLIRLLGEPPIQQTLRMIYDLNEAELRFLFGVVRLIKQTGLVGSR 253 Query: 125 SIVSSEKKYRTIEEECMV 142 +++ E +IEEE + Sbjct: 254 RMLNEEACLSSIEEEGIE 271 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+++RL R G++ ++L GI+ + ++ E R L+ +++ L I Sbjct: 69 LGQKLRLLREERGLALQELARLAGISIETLRAIEAEEVRPSVDTLRTLADHLNVSI 124 Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 IR R G+S +++ G++ + + E+G + + IS L Sbjct: 6 IRRVREEKGLSLQEVSRLSGVSVSYLSEIERGTKQPAPRIIDKISTALG 54 >gi|153955561|ref|YP_001396326.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855954|ref|YP_002473076.1| hypothetical protein CKR_2611 [Clostridium kluyveri NBRC 12016] gi|146348419|gb|EDK34955.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569678|dbj|BAH07662.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R+ G+SQ++L LG+T Q + YE+ S ++ I ++L F Sbjct: 3 GLNLKIERIKKGLSQKQLASMLGVTNQTISDYERCKISPSLSNMEKICKILNINPRKLFF 62 Query: 76 VSPTVCSD 83 + D Sbjct: 63 NNDEKEGD 70 >gi|89897035|ref|YP_520522.1| hypothetical protein DSY4289 [Desulfitobacterium hafniense Y51] gi|219667095|ref|YP_002457530.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89336483|dbj|BAE86078.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537355|gb|ACL19094.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 181 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+ IR R ++ +L + L ++ + E+ + + L+ I++ L P+ Sbjct: 2 IEVGEFIRAIRKRRNLTTTQLADQLDLSNGYISLIERNIVSPSLATLKRIAQALSVPLES 61 Query: 73 FFDVSPTV 80 FF T Sbjct: 62 FFLDPDTE 69 >gi|313673033|ref|YP_004051144.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939789|gb|ADR18981.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 187 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K+IR R G++ E+L + +G T V E S L+ I I+ F Sbjct: 8 YISKKIRNLRKSQGITLEQLAKAIGKTKSYVSMLENEKAIPSLSTLKEIVSFFNMTIADF 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 F+ SD + E V F S + Sbjct: 68 FE-ESEQKSDFNKE---VFSFSSDAE 89 >gi|260843067|ref|YP_003220845.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|260866991|ref|YP_003233393.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257758214|dbj|BAI29711.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257763347|dbj|BAI34842.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|323967329|gb|EGB62751.1| helix-turn-helix protein [Escherichia coli M863] Length = 94 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G++QEKLG G+ ++ +YEKG + + ++++VL P+SF Sbjct: 5 RLKEARRRAGLTQEKLGILAGLDEASASTRINQYEKGKHSPNFETVSNLAKVLNVPVSFL 64 Query: 74 FDVSPTVCS 82 + + Sbjct: 65 YTPEDDLAQ 73 >gi|15674195|ref|NP_268370.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12725279|gb|AAK06311.1|AE006450_4 transcription regulator [Lactococcus lactis subsp. lactis Il1403] Length = 102 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G ++R RM ++Q L LGI V YEK L + + + + Sbjct: 5 YFGDKLRALRMEKKLTQNDLAARLGIVGASVSSYEKNKQYPSVEVLIQLCQTFDVSADYL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 +S + S+ + + L+L F Sbjct: 65 LGLSDDKNFNTSTLTEEQLQIV-----LRLINEF 93 >gi|75762759|ref|ZP_00742588.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489747|gb|EAO53134.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 136 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E L T Q V K+E G +L I +V E + + Sbjct: 1 MEFGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDY 60 Query: 73 FFDVSPTVCSD 83 + ++ Sbjct: 61 LLKETAEQSNE 71 >gi|296114146|ref|ZP_06832801.1| hypothetical protein GXY_00139 [Gluconacetobacter hansenii ATCC 23769] gi|295979222|gb|EFG85945.1| hypothetical protein GXY_00139 [Gluconacetobacter hansenii ATCC 23769] Length = 188 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+L R G+SQ+ E LG++ V +E G + + + I+E+ Sbjct: 82 REIGQRIQLLRKAAGLSQKAFAEMLGMSRAAVCFWETGRSSHISEHVPRIAEIFGISEEV 141 Query: 73 FFDV--SPTVCSDISSEENNVMDFIST 97 F + + T+ +++ +E N++ + Sbjct: 142 FLNGQNNETIPIELTKDEENIIKLYRS 168 >gi|269797236|ref|YP_003311136.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269093865|gb|ACZ23856.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 64 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+L R +LG+SQ +L +G+T + E G I+ VL I+ F Sbjct: 3 NKIKLYRTMLGLSQHELAGKVGVTRATINSIENGKTIPSLKLANDIAVVLGRSINDVF 60 >gi|163815391|ref|ZP_02206766.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] gi|158449365|gb|EDP26360.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] Length = 172 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 14/117 (11%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K+ +D + +G +R R GM+QE++ G++ + V ++E G + L ++ Sbjct: 8 KEKTEMIDQVKIGNFLRKLRKEKGMTQEEIATKFGVSSRSVSRWENGNTMPDLAILVELA 67 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + I D S+ +E T + L + D + RQ + Sbjct: 68 DYYDVDIREIIDG--ERKSENMEKE--------TKETLLKIADYA---DKQKRQAVF 111 >gi|154499014|ref|ZP_02037392.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|261366721|ref|ZP_05979604.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332655640|ref|ZP_08421260.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|150271854|gb|EDM99080.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|282571548|gb|EFB77083.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332515537|gb|EGJ45171.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 109 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 21/119 (17%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I +G I++ R G +Q+ L E LG+T + E+G + + LQ + +L Sbjct: 6 DINIEIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGV- 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSI 126 ++E + L L R +I D + RQ++ EL+ +I Sbjct: 65 --------SADRIIFGTDEPE-------AEALALAR---RISDIKPEYRQQVQELLSAI 105 >gi|257867362|ref|ZP_05647015.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257873693|ref|ZP_05653346.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] gi|257801418|gb|EEV30348.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257807857|gb|EEV36679.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] Length = 180 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 37/80 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE +T + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF + EE++ + Sbjct: 61 FFREENAQHQVVYREEDSTL 80 >gi|225388243|ref|ZP_03757967.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme DSM 15981] gi|225045711|gb|EEG55957.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme DSM 15981] Length = 116 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 4/107 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI++ R+ ++QE L E ++ + E G +++ + ++ L + Sbjct: 6 RAIGKRIKIARIKADLTQEALAEKASLSTTHMSNIETGNSKLSLPTIVSLANALSVSVDE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQ 117 F S DI S+E + D +S D + + F++ +R+ Sbjct: 66 FLCDSVIHSKDIFSQE--IQDLVSDCDEYEIRMIADFVRAAKETIRK 110 >gi|254173699|ref|ZP_04880371.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] gi|214032391|gb|EEB73221.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] Length = 65 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ + I F Sbjct: 3 NRLRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGAKIEDIF 60 >gi|186972781|pdb|2R1J|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With The Synthetic Operator 9t gi|186972782|pdb|2R1J|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With The Synthetic Operator 9t Length = 68 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 Query: 76 VS 77 Sbjct: 67 GD 68 >gi|183982165|ref|YP_001850456.1| transcriptional regulator [Mycobacterium marinum M] gi|183175491|gb|ACC40601.1| transcriptional regulator [Mycobacterium marinum M] Length = 180 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E+L + G+T + K E+G + + ++ L+ + F Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDES 64 Query: 79 TVCS 82 + Sbjct: 65 AHET 68 >gi|114763961|ref|ZP_01443202.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114543553|gb|EAU46567.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 131 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R GM QEKL LG+ + + +E + A++LQ ++ +L I + Sbjct: 16 GDRIAAAREAAGMGQEKLARRLGVKLKTLHGWENDLAEPRANKLQMLAGLLNVSIVWLLT 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 S EE D L R Sbjct: 76 GEGEGIS--GPEETEAALPADVNDALLEIRA 104 >gi|28870630|ref|NP_793249.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971343|ref|ZP_03399458.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301381233|ref|ZP_07229651.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302061820|ref|ZP_07253361.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302131845|ref|ZP_07257835.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853878|gb|AAO56944.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923881|gb|EEB57461.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|331019463|gb|EGH99519.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 189 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +V +R R +SQ L E G++ + + E G V + L ++E LE Sbjct: 10 PVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVA 69 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 S +E + + L R + Sbjct: 70 FSDLIQAPENRDHSRINELAWAGTIPGSK-AVLLARAIAR 108 >gi|89892828|ref|YP_516315.1| hypothetical protein DSY0082 [Desulfitobacterium hafniense Y51] gi|89332276|dbj|BAE81871.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 68 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R+ R G++Q++LGE +G++ Q + E G ++++ + I F Sbjct: 3 NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFDPSLWLAYDLAKLFKVSIEELF 60 >gi|148265766|ref|YP_001232472.1| putative prophage repressor [Geobacter uraniireducens Rf4] gi|146399266|gb|ABQ27899.1| putative prophage repressor [Geobacter uraniireducens Rf4] Length = 216 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI++G RI+ R M+Q++ + LGI + E+G + L + + + Sbjct: 9 DISIGLRIKELRQAKDMTQKEFADSLGIVQGFLSGIERGKKSPSDTLLIALCHLYKINKE 68 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP 98 + + + + + +F++T Sbjct: 69 WLYTGRGDMFGKTQLPDKLIEEFVTTR 95 >gi|223933217|ref|ZP_03625208.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|330832261|ref|YP_004401086.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223898147|gb|EEF64517.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329306484|gb|AEB80900.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 126 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQ 60 + + KI P VG+RIR R + G Q + LG Q + K+E GVN +L Sbjct: 1 MADAKIKYP---EVGQRIRELREMRGFEQLDIANQLGYKSQSTISKWESGVNLPTGKKLI 57 Query: 61 HISEVLESPISF 72 ++E+L++ + Sbjct: 58 LLAEMLDTSTDY 69 >gi|145219415|ref|YP_001130124.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205579|gb|ABP36622.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 379 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + + +G R+R RM LG SQEKL EC G+ + E+G + + + I+ L Sbjct: 6 SDSITRLLGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALH 65 Query: 68 SPISF---------FFDVSPTVCS 82 ++ F+++ P S Sbjct: 66 ITLADILGTQQLKEFYELFPGSFS 89 >gi|330876735|gb|EGH10884.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 189 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +V +R R +SQ L E G++ + + E G V + L ++E LE Sbjct: 10 PVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVA 69 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 S +E + + L R + Sbjct: 70 FSDLIQAPENRDHSRINELAWAGTIPGSK-AVLLARAIAR 108 >gi|321314262|ref|YP_004206549.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] gi|320020536|gb|ADV95522.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] Length = 129 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 6/116 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R M+Q+++ + LGI YE+G L I+ E + + Sbjct: 6 RLKKLRDGKKMNQQEVADNLGIARTTYASYEQGKREPDHETLVKIANFFEVTVDYLLGHQ 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEK 131 P + EE P L F D + R++ I+ + + EK Sbjct: 66 PNSKP-VVHEEKAPYKVTDDP---DLQIAFKDASDFSEEARRQAIDFINYLKEKEK 117 >gi|315149857|gb|EFT93873.1| helix-turn-helix protein [Enterococcus faecalis TX0012] Length = 273 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 7/69 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRL 59 ++G K+ VG+R++LRR L +S +K+ + LG++ + +YEKG + ++ RL Sbjct: 26 IIGGDKMK------VGERMKLRRKELNISADKIADELGVSRSTIFRYEKGDIEKLPTERL 79 Query: 60 QHISEVLES 68 I+++L++ Sbjct: 80 ITIAKILKT 88 >gi|307293728|ref|ZP_07573572.1| transcriptional regulator, XRE family [Sphingobium chlorophenolicum L-1] gi|306879879|gb|EFN11096.1| transcriptional regulator, XRE family [Sphingobium chlorophenolicum L-1] Length = 467 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 58/130 (44%), Gaps = 12/130 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++K + +G ++R+ R LG++Q ++ E LG++ + E+ + A L Sbjct: 1 MADDRK------LYLGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLL 54 Query: 61 HISEVLESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ V + I F + + + +I S+ ++ + L++ + + + R Sbjct: 55 RLANVYDIDIRDFVASTQEGAASALGEILSDALVRDIGVARDEVLEVAENYPGVSEAIGR 114 Query: 117 --QKIIELVR 124 + + +L R Sbjct: 115 FYRALSDLRR 124 >gi|306825566|ref|ZP_07458905.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431927|gb|EFM34904.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 69 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R +SQ+ L + +G+ + +E G +++ + ++E I + Sbjct: 7 NRIRELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLLGS 66 Query: 77 SPT 79 Sbjct: 67 ESD 69 >gi|288818209|ref|YP_003432557.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] gi|288787609|dbj|BAI69356.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] Length = 235 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R LG+SQE+ GE +G + + +Q +E G ++ + L+ I+ ++ Sbjct: 14 NRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTFGVS----YEW 69 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 T ++ E ++ I + +L Sbjct: 70 LKTGQGEMWGREKLSLEEIIEREQRKLLES 99 >gi|123443686|ref|YP_001007657.1| putative DNA-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090647|emb|CAL13518.1| putative DNA-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 118 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R +SQEKLG GI +V +YEKG + ++ + +L P + Sbjct: 4 ERLKSARKTAKLSQEKLGVLAGIDEATARSRVSQYEKGFHTPSFDLIKKFAVILNVPECY 63 Query: 73 FFDVSPTVCSDISS 86 F+ V + Sbjct: 64 FYIVDDVFAEAVLE 77 >gi|126433238|ref|YP_001068929.1| hypothetical protein Mjls_0627 [Mycobacterium sp. JLS] gi|126233038|gb|ABN96438.1| protein of unknown function DUF955 [Mycobacterium sp. JLS] Length = 475 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 6/126 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDVKV---RQKIIELVRSIV 127 T E + + + + + V R+ + + Sbjct: 65 ASQDDTRLVAELREVTMDRELGVEVDVSEIADMVAAHPTLARAMVNLHRRYRLTTTQLAA 124 Query: 128 SSEKKY 133 ++E +Y Sbjct: 125 ATEDRY 130 >gi|291526787|emb|CBK92373.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 115 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K D G RI RR ++G+SQ++L +GI Q + E G + L + Sbjct: 1 MSSKAQTREKDYERGLRIADRRKVMGLSQDELAHRVGIGRQALSAIENGGD-FKTQTLDN 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ VL + F S++ SE MD +S D LQ+ + I Sbjct: 60 LAIVLGVSVDFIMYGKNEENSELLSEA---MDVLSDMDELQVRQCLAMIK 106 >gi|291286694|ref|YP_003503510.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290883854|gb|ADD67554.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 105 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R SQE L E I+ + + + E+G + V A+ L I+ L PI+ Sbjct: 6 VKLGRRIREVRRSKNFSQETLAEKANISSKYLGEVERGESNVSAALLNDIASALNIPIAE 65 Query: 73 FFD 75 D Sbjct: 66 LMD 68 >gi|148266629|ref|YP_001245572.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392669|ref|YP_001315344.1| hypothetical protein SaurJH1_0195 [Staphylococcus aureus subsp. aureus JH1] gi|257793983|ref|ZP_05642962.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258408610|ref|ZP_05680895.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421201|ref|ZP_05684128.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258438949|ref|ZP_05690040.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258444184|ref|ZP_05692518.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258447065|ref|ZP_05695215.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258448523|ref|ZP_05696636.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258455756|ref|ZP_05703711.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282893361|ref|ZP_06301594.1| transcriptional regulator [Staphylococcus aureus A8117] gi|282926312|ref|ZP_06333944.1| transcriptional regulator [Staphylococcus aureus A10102] gi|295405474|ref|ZP_06815284.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296274946|ref|ZP_06857453.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus MR1] gi|297209290|ref|ZP_06925689.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244811|ref|ZP_06928691.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300911288|ref|ZP_07128737.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|147739698|gb|ABQ47996.1| transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|149945121|gb|ABR51057.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257787955|gb|EEV26295.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840619|gb|EEV65078.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842625|gb|EEV67047.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257847825|gb|EEV71821.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850443|gb|EEV74391.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854078|gb|EEV77031.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257858154|gb|EEV81042.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257861968|gb|EEV84741.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282591641|gb|EFB96712.1| transcriptional regulator [Staphylococcus aureus A10102] gi|282764047|gb|EFC04174.1| transcriptional regulator [Staphylococcus aureus A8117] gi|294969549|gb|EFG45568.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296886223|gb|EFH25157.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178328|gb|EFH37575.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300887467|gb|EFK82663.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 65 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ L M+Q++L +G+T Q + EKGV+ S ++I VL + F Sbjct: 3 NNLKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIFGE 62 Query: 77 SP 78 P Sbjct: 63 KP 64 >gi|33151354|ref|NP_872707.1| transcription regulator [Haemophilus ducreyi 35000HP] gi|33147574|gb|AAP95096.1| probable transcription regulator [Haemophilus ducreyi 35000HP] Length = 233 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R G S+ +L + LG++ +Q +E AS + I+E L S+ Sbjct: 11 IGNRIRDEREKAGRSRNELADTLGLSLSTLQLWETNEREPQASMIITIAEELGVSPSYLL 70 Query: 75 DVSPTVCS 82 Sbjct: 71 TGETEEGE 78 >gi|328883064|emb|CCA56303.1| hypothetical protein SVEN_3017 [Streptomyces venezuelae ATCC 10712] Length = 126 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G RIR R G+SQ++L + + + + VQ+YE+G + L I++ L ++ Sbjct: 67 GHRIRELRTAAGLSQDQLADRIHMERRSVQRYERGERDPRFTDLVLIADALGVTVA 122 >gi|317055082|ref|YP_004103549.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447351|gb|ADU20915.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 165 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 13/108 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++ R G+SQEKL E G++ + V ++E G S + +++ I Sbjct: 4 VKIGAFLKQLRNEKGLSQEKLAEVFGVSSRSVSRWENGRTMPDISIIIELADYYGIDIR- 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + E+ D + L + + D + +Q I+ Sbjct: 63 ------ELLNGERKSEDMNKDV---KETLTMVADY---TDKQKKQAIL 98 >gi|283785296|ref|YP_003365161.1| DNA-binding protein [Citrobacter rodentium ICC168] gi|282948750|emb|CBG88345.1| putative DNA-binding protein [Citrobacter rodentium ICC168] Length = 191 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ +G RIR+ R G S +L E G++ + K E+G + A+ L +S Sbjct: 4 IEDSINQRIGVRIRIERESRGWSLTELAEKAGVSRAMIHKIERGESSPTATLLGRLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|189350245|ref|YP_001945873.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] gi|189334267|dbj|BAG43337.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] Length = 246 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 +R+R R +SQ +L G++ + E G N+ G+ L I+ L ++ + Sbjct: 6 QRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQ-GSKHLLSIARALGVNPAWLESE 64 Query: 76 VSPTVCSDISSEENNVM 92 P S ++ + + Sbjct: 65 SGPKDASAAAAPQPGIY 81 >gi|188588059|ref|YP_001921522.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498340|gb|ACD51476.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 114 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ +SQ KL E I+ Q V YEKG+ + +S ++ +S + + Sbjct: 7 NRLKELRIEKDLSQAKLAELFNISQQAVSHYEKGIRDIDSSLIKTLSNFFSVSSDYLLGI 66 Query: 77 SP 78 S Sbjct: 67 SD 68 >gi|240171997|ref|ZP_04750656.1| transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length = 174 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 20/110 (18%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E+L E G+T + K E+G + + +S L+ + F Sbjct: 5 LRAVRRHRGLTLEQLAEQTGLTKSYLSKIERGHSTPSIAVALKVSRALDVDVGRLF---- 60 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 SD +++E +D S G +VR + L +++ Sbjct: 61 ---SDETAQEKITVDRASDRAG-------------QVRGRYRALASTLLG 94 >gi|296139176|ref|YP_003646419.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027310|gb|ADG78080.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 171 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+P +VG R+R R G+S +L G+ + + E G L + L Sbjct: 1 MPSP---DVGGRLRELRSERGLSLSELARRAGVGKGSLSEIEAGGRNPTVETLYSLCGPL 57 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM 92 + P++ SP S V+ Sbjct: 58 DVPLTALLGESPGTDSTAHGGMRTVL 83 >gi|239828402|ref|YP_002951026.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239808695|gb|ACS25760.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 97 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +I+ RR L MSQ++L + +G+ + + E G+ L IS+ L +P Sbjct: 26 IAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|88803144|ref|ZP_01118670.1| helix-turn-helix family protein [Polaribacter irgensii 23-P] gi|88780710|gb|EAR11889.1| helix-turn-helix family protein [Polaribacter irgensii 23-P] Length = 74 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R IL ++QE+L +G++ Q + EK +S + + P++ FF++ Sbjct: 3 NRLKIERAILDLTQEELANKIGVSRQTISSIEKNRYVPSTVLSLRLSNLFKKPVNDFFEL 62 Query: 77 SPTVCSDI 84 ++ Sbjct: 63 DENEKANT 70 >gi|86137418|ref|ZP_01055995.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85825753|gb|EAQ45951.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 133 Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R M+Q +L LG+ + +E+ ++ A++L +S +L +S+ Sbjct: 17 GDRVAAAREAADMTQAQLARRLGVKKTTLMGWEQDLSEPRANKLSMVSGLLNVSMSWLLT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S+ S + +V DF LQ R +R ++ EKK RT Sbjct: 77 GEGEGMSEPSEMDLDVGDF---AGVLQELRA--------LRNEMRSNAERAARLEKKLRT 125 Query: 136 I 136 + Sbjct: 126 L 126 >gi|183598237|ref|ZP_02959730.1| hypothetical protein PROSTU_01621 [Providencia stuartii ATCC 25827] gi|188020406|gb|EDU58446.1| hypothetical protein PROSTU_01621 [Providencia stuartii ATCC 25827] Length = 108 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG ++ R G+S ++ L I+ QQ+ +YE+G+N + L + +L Sbjct: 16 SITKIVGASMKRARREKGLSGYEIAVKLNISQQQISRYERGINHISVDTLFNF--ILALD 73 Query: 70 ISF 72 IS+ Sbjct: 74 ISY 76 >gi|154498814|ref|ZP_02037192.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC 29799] gi|150272204|gb|EDM99408.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC 29799] Length = 198 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 16/98 (16%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++IR R GM+Q++L G+ IT + K E L++++ L P Sbjct: 1 MTLGQKIREARQSKGMTQKELVGDY--ITRNMLSKIENDSAIPSVRTLEYLAGALGFPTG 58 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +F +P + PDGL R + Sbjct: 59 YFLSGAPVSDG-------------TAPDGLDEARAAYR 83 >gi|331017574|gb|EGH97630.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 228 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ IR R G+SQ+ L G + ++ YEKG + ++ I++ L Sbjct: 4 LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKIADTLGVS 59 >gi|291485885|dbj|BAI86960.1| putative transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 67 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+ +G IR +R G+SQ E +G T V + E G L+ IS+ L Sbjct: 2 IDLSELGHMIRKKRKESGLSQTVFAEKIGCTGSYVSRLENGKVSPTLKSLEQISQTLNIK 61 Query: 70 ISFFFD 75 FFD Sbjct: 62 AKLFFD 67 >gi|284055653|pdb|3JXB|C Chain C, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c gi|284055654|pdb|3JXB|D Chain D, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c gi|284055657|pdb|3JXC|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9t In The Presence Of Tl+ gi|284055658|pdb|3JXC|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9t In The Presence Of Tl+ gi|284055661|pdb|3JXD|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c In The Presence Of Rb+ gi|284055662|pdb|3JXD|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c In The Presence Of Rb+ Length = 67 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 6 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 65 Query: 76 VS 77 Sbjct: 66 GD 67 >gi|302522509|ref|ZP_07274851.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|318058819|ref|ZP_07977542.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actG] gi|318075294|ref|ZP_07982626.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actF] gi|333023793|ref|ZP_08451857.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] gi|302431404|gb|EFL03220.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|332743645|gb|EGJ74086.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] Length = 509 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G SQ +L E L + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|288572784|ref|ZP_06391141.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568525|gb|EFC90082.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G +Q+ L +G+T + +EK L +++ L +F Sbjct: 4 GNDLKRLRKEKGWTQQDLASRVGVTKTTILDWEKDRYSPVGQNLISLAKALNVSAAFIMG 63 Query: 76 V--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P+ V+ ++ GL L+ ID Sbjct: 64 ETNDPSPQGTGKKAPEGVLRYLRDQTGLSLDEAAALID 101 >gi|114327636|ref|YP_744793.1| HTH DNA-binding protein [Granulibacter bethesdensis CGDNIH1] gi|114315810|gb|ABI61870.1| HTH DNA-binding protein [Granulibacter bethesdensis CGDNIH1] Length = 286 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 26/135 (19%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES------ 68 +G+R+R R+ G+ E++ LG++ + +YEKG + +Q ++E+L+ Sbjct: 8 IGQRLRAYRLESGLRAEEIAARLGVSRAALYRYEKGEV-IKLDTVQRLAELLQVSPLSLL 66 Query: 69 ---------PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ---IDDVKVR 116 P+ +F + +++ V D + L F+ I R Sbjct: 67 GVSIEYQSRPVGYF--ERARQIEENAAQLQFVGDALCHLTMLDETEAFLAESIISRHAGR 124 Query: 117 QK-----IIELVRSI 126 K + +LV+++ Sbjct: 125 SKADRLYVEQLVKTL 139 >gi|21322195|gb|AAM47490.1| putative transcriptional regulator [Serratia sp. 2-68] Length = 88 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R G++QE+LG GI ++ YE G R + ++VL P + Sbjct: 4 KRLKSARTRAGLTQEQLGVLAGIDESTARGRISSYETGAYRPVFETMCLFAKVLNVPECY 63 Query: 73 FFDVSPTVCSDI 84 F+ V ++ Sbjct: 64 FYIVDDQFAEEV 75 >gi|19263421|ref|NP_597807.1| DNA binding protein [Streptococcus phage Sfi21] Length = 170 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ L R +++ +L E +G++ V K+E G +++ + +++ + + + Sbjct: 2 NRLYLLRESRKITRVELAEKIGVSKLTVLKWEHGTSKISRREAKKLADFFGVSVGYLLGL 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 T I+ + ++ + GL Sbjct: 62 DTTENDSITDLIAKINEW-AISHGLD 86 >gi|320008066|gb|ADW02916.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 190 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ + I VG +IR RR GMS +L G+ + + E G L + Sbjct: 5 GERRPASSTAIAVGAQIRRRREQRGMSSAELARRAGLGKATLSQLEAGRGNPTIETLDAL 64 Query: 63 SEVLESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + L P++ D P + + V G +L R +I Sbjct: 65 AIALRIPLTDLLARDTDPGPVLVPGTDLADGEV--------GRELLR---RISS 107 >gi|254519819|ref|ZP_05131875.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226913568|gb|EEH98769.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 179 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ ++QE+L ++ + + E + + L I E+L + ++ Sbjct: 1 MEIGEKIRRLRIEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLTE 60 Query: 73 FFDVSPTV 80 FF + Sbjct: 61 FFSEASEE 68 >gi|282601274|ref|ZP_05981265.2| putative transcriptional regulator [Subdoligranulum variabile DSM 15176] gi|282569583|gb|EFB75118.1| putative transcriptional regulator [Subdoligranulum variabile DSM 15176] Length = 195 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI---TFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG++IRL R ++Q +LG+ LG+ +V +YE G L+ I++VL+ P Sbjct: 3 MKVGQKIRLVRRHRHLTQRELGDRLGLGEGGANRVAQYEMGYRVPKDELLRKIADVLDVP 62 Query: 70 ISFFF 74 + FF Sbjct: 63 VENFF 67 >gi|268591033|ref|ZP_06125254.1| putative HTH-type transcriptional regulatory protein [Providencia rettgeri DSM 1131] gi|291313839|gb|EFE54292.1| putative HTH-type transcriptional regulatory protein [Providencia rettgeri DSM 1131] Length = 90 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+I +G I+ R G+S +L + L ++ QQV +YE+G ++ +L ++ L+ + Sbjct: 7 VNIKLGYLIKKLRKKKGISGAELAKKLNVSQQQVSRYERGATKLSFEKLIELTIYLDLDL 66 Query: 71 S 71 S Sbjct: 67 S 67 >gi|254500680|ref|ZP_05112831.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222436751|gb|EEE43430.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 183 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++ +R+ R G+S ++L E GI+ + + E+G A+ L ++ ++ Sbjct: 3 DQDLAQRLIGLRKTKGLSLDELAEKSGISRATLSRIERGDTSPTAAALGRLATAFGVSVA 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDG 100 F + + + N P+ Sbjct: 63 DLFGLG--AAAHDAKLAQNEQAVWRDPET 89 >gi|108797614|ref|YP_637811.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119866701|ref|YP_936653.1| hypothetical protein Mkms_0647 [Mycobacterium sp. KMS] gi|108768033|gb|ABG06755.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119692790|gb|ABL89863.1| protein of unknown function DUF955 [Mycobacterium sp. KMS] Length = 475 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 6/126 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDVKV---RQKIIELVRSIV 127 T E + + + + + V R+ + + Sbjct: 65 ASQDDTRLVAELREVAMDRELGVEVDVSEIADMVAAHPTLARAMVNLHRRYRLTTTQLAA 124 Query: 128 SSEKKY 133 ++E +Y Sbjct: 125 ATEDRY 130 >gi|329888188|ref|ZP_08266786.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846744|gb|EGF96306.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 65 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++L R+ +QE+LG+ LG++ Q V E + I+ + E P+ F+ Sbjct: 3 NRLKLLRVERNWTQEQLGQALGVSRQAVNALETEKHDPSLDLAYRIAALFERPVEDIFE 61 >gi|312130932|ref|YP_003998272.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311907478|gb|ADQ17919.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 120 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR+ R + G+SQE + + L I+ YE ++ ++ I+ VL Sbjct: 3 GAKIRMIREMRGLSQENVADELDISQSTYSLYESDKIKITGEMIEKIASVLNVSPLDIMS 62 Query: 76 VSPTVCS-----DISSEENNVMDFISTPDGL 101 P + + N+ + STP L Sbjct: 63 HQPVIINFQSNKGTQQAIGNIETYTSTPKEL 93 >gi|16764259|ref|NP_459874.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|169257171|ref|YP_001700549.1| putative transcriptional regulator (repressor) [Salmonella phage Fels-1] gi|16419406|gb|AAL19833.1| predicted Fels-1 prophage transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Length = 231 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++IR R M+ +L + + E+G+ A +Q I+E L+ P+S Sbjct: 3 VKVGQKIRELRKARKMTITQLAALTDWDVGNISRLERGMQGYSAQSIQKIAEALQVPVSE 62 Query: 73 FFDVS 77 F Sbjct: 63 LFSTE 67 >gi|85707180|ref|ZP_01038267.1| transcriptional regulator, putative [Roseovarius sp. 217] gi|85668339|gb|EAQ23213.1| transcriptional regulator, putative [Roseovarius sp. 217] Length = 436 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR++ G+ Q L + GI+ + E R+G L ++E L+ S Sbjct: 7 IGTRIRERRVLNGIRQSDLAQQAGISPSYLNLIEHNHRRIGGKTLLKLAEALKVEPSQLT 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + E D DG +L+R Sbjct: 67 QGAEVTLISGLREAAGKPD----TDGPELDR 93 >gi|332976082|gb|EGK12950.1| helix-turn-helix domain protein [Desmospora sp. 8437] Length = 359 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 26/123 (21%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++R R L ++QE LG +G++ Q + +EKG + ++L ++ L P+ Sbjct: 9 QLRPLREQLTVTQEDLGRSVGVSRQTIAAWEKGESTPTVAQLFSLARTLGVPV------- 61 Query: 78 PTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + E++ + F + P+ L ++R ++ Y T+ Sbjct: 62 -EILLGRKKEQDFKLLFRADQPETLT----------PEMR-------EALAKKAANYATV 103 Query: 137 EEE 139 E+ Sbjct: 104 EQL 106 >gi|330821781|ref|YP_004350643.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] gi|327373776|gb|AEA65131.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] Length = 186 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D + +R+R R G S E L E G++ + E+G + A L ++ L Sbjct: 2 NVHDR-IAERLRALRDARGWSLETLAEHSGVSRSNISLIERGQSSPTAVVLDKLATALAV 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTP 98 P+S F S + + P Sbjct: 61 PLSSLFGESGESEAPSPIARAADQPLWTDP 90 >gi|227519526|ref|ZP_03949575.1| possible transcriptional repressor [Enterococcus faecalis TX0104] gi|257090868|ref|ZP_05585229.1| predicted protein [Enterococcus faecalis CH188] gi|312902504|ref|ZP_07761710.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227072975|gb|EEI10938.1| possible transcriptional repressor [Enterococcus faecalis TX0104] gi|256999680|gb|EEU86200.1| predicted protein [Enterococcus faecalis CH188] gi|310634174|gb|EFQ17457.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579687|gb|EFU91878.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 162 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G+RI+ R+ ++QE+L G+ + KYEKG V + S ++ +S+ S+ Sbjct: 17 GERIKRLRLEKNLTQEELASKFGLKRAAINKYEKGNVENMKRSVIEDMSKFFGVSPSYLM 76 Query: 75 DVSPTVCS 82 + + S Sbjct: 77 ALDDSTSS 84 >gi|218282117|ref|ZP_03488416.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] gi|218216910|gb|EEC90448.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] Length = 334 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G +QE L + LG++ Q V K+E ++ ++++ E + Sbjct: 21 KIIEERKKNGWTQEDLAQKLGVSRQSVSKWESAGAIPDLKKIIQLADLFEVSTDYLLKDE 80 Query: 78 PTVCS 82 + Sbjct: 81 IEKEN 85 >gi|146308997|ref|YP_001189462.1| putative phage repressor [Pseudomonas mendocina ymp] gi|145577198|gb|ABP86730.1| putative phage repressor [Pseudomonas mendocina ymp] Length = 240 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+R++ R GMSQ+ L E G + ++ YE + S L I+ L ++ Sbjct: 4 LGQRLKRLRKAKGMSQQALAEECGWASQSRIGNYEADLRAPSLSDLLLIAPALGVSLA 61 >gi|228961614|ref|ZP_04123223.1| hypothetical protein bthur0005_50560 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051021|ref|ZP_04194569.1| hypothetical protein bcere0027_49740 [Bacillus cereus AH676] gi|37650614|emb|CAE46898.1| transcriptional regulator [Bacillus thuringiensis] gi|37650622|emb|CAE46902.1| transcriptional regulator [Bacillus thuringiensis] gi|228722330|gb|EEL73727.1| hypothetical protein bcere0027_49740 [Bacillus cereus AH676] gi|228798096|gb|EEM45100.1| hypothetical protein bthur0005_50560 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 285 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|310830222|ref|YP_003965322.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753128|gb|ADO44271.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 197 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R RR+ LG++Q + + G+T + + E+G+ S L IS+VL F Sbjct: 8 VGDALRARRIALGITQRVVADQAGLTTGFISQVERGLTAPSLSSLHAISKVLGLSPLQFI 67 Query: 75 DVSPTVCS 82 D P Sbjct: 68 DTPPAPQQ 75 >gi|237800519|ref|ZP_04588980.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023379|gb|EGI03436.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 115 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +SQ L E +G + +YE+G+N G +L I+ V Sbjct: 2 VGAKIKALRKSSTLSQADLAEKIGCDAPLIGRYERGINLPGIEQLIRIATVFNVAPGELL 61 Query: 75 DVSPTVC--------SDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 V ++S + N V S + ++L FI ++ Sbjct: 62 PGGQDVLRTRLISLRQELSEKINQVDSPESLEEIIRLTDKFIAYNNP 108 >gi|157325448|ref|YP_001468872.1| gp32 [Listeria phage A006] gi|255016762|ref|ZP_05288888.1| hypothetical protein LmonF_00901 [Listeria monocytogenes FSL F2-515] gi|300765039|ref|ZP_07075027.1| hypothetical protein LMHG_11512 [Listeria monocytogenes FSL N1-017] gi|66733453|gb|AAY53267.1| gp32 [Listeria phage A006] gi|300514339|gb|EFK41398.1| hypothetical protein LMHG_11512 [Listeria monocytogenes FSL N1-017] Length = 83 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 19 IRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 IR +R LG SQ+ + LG KYE G ++ A L ++++L+ IS FF + Sbjct: 10 IREKRESLGFSQKDMAIKLGFKNASTYLKYETGEYKIKAEMLPLLAKILKCNISNFFTKN 69 Query: 76 VSPTVCSDIS 85 V+ T D + Sbjct: 70 VAKTETGDFA 79 >gi|16800830|ref|NP_471098.1| hypothetical protein lin1762 [Listeria innocua Clip11262] gi|16414249|emb|CAC96993.1| lin1762 [Listeria innocua Clip11262] Length = 146 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 21/135 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 + RI+ R ++QE+L + + T + YE + A + +++ LE+ + Sbjct: 2 ISNRIKSARKYRKLTQEELAKKINSTKSTISNYENSYSSPSAEVISMLADALETSTDYLL 61 Query: 74 ------------FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKI- 119 +D++ +DI E ++ + + DGL F D + R+ + Sbjct: 62 EKTDEIEIKQKYYDLTKKDENDIEKELEKILSNLDSSDGL----AFSGEPLDDETRELLS 117 Query: 120 IELVRSI--VSSEKK 132 I L RS+ E K Sbjct: 118 ISLERSLRFARQESK 132 >gi|134300926|ref|YP_001114422.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053626|gb|ABO51597.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 152 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 6/111 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R G++Q+ L + L I + YE + L+ +++ + + + Sbjct: 6 KRMKELREGKGLTQQALADALNIGKSAIALYETEKRQPDPDTLKKLAQFFNCSVDYLLGL 65 Query: 77 SPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 S V S + + +VM F+ + +L + I+ K+IE Sbjct: 66 SNECQGTIFVHSALPALPVDVMSFVLDKNNHKLIKVIQSINAQGYSNKVIE 116 >gi|332976057|gb|EGK12927.1| DNA-binding protein [Desmospora sp. 8437] Length = 184 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R+ G + + L E G++ + + E+G + + + L+ I++ L PI+ FF+ Sbjct: 11 QEIKRLRLEQGYTLKVLSERTGLSVSFLSQVERGSSSLAITSLKKIADALGVPITRFFEA 70 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +EE + + +++ + + L+ ++ EK+ R Sbjct: 71 EFNHNYLLKAEEQKPFRLEGSS------AVYTRLNGEFGGRSLEPLLVTLAPKEKQAR 122 >gi|322377260|ref|ZP_08051752.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] gi|321281973|gb|EFX58981.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] Length = 194 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+++ + + I+ + + ++E G +++ + Q +++ I + Sbjct: 2 NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQMLADFFGVHIGYL 58 >gi|169828330|ref|YP_001698488.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992818|gb|ACA40358.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 148 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G IR+ R +SQE+L E + ++ Q + K+E G + + + ++ + I Sbjct: 5 IGMNIRVLRKRHKLSQEQLAEKVNVSRQTIAKWENGEAIPDIYKFKMLGDIFQVTID 61 >gi|59712644|ref|YP_205420.1| Cro/Cl family transcriptional regulator [Vibrio fischeri ES114] gi|59480745|gb|AAW86532.1| transcriptional repressor, Cro/CI family [Vibrio fischeri ES114] Length = 215 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R ++Q + + G++ V +E+ N+ L ++ L+ +++ Sbjct: 5 GSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMALASFLKCDVNWLLT 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDG 100 + +E V+ P G Sbjct: 65 GQGSPEPAKQEQETTVVSVALKPQG 89 >gi|295835925|ref|ZP_06822858.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] gi|197698390|gb|EDY45323.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] Length = 509 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G SQ +L E L + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|182418649|ref|ZP_02949926.1| DNA-binding protein [Clostridium butyricum 5521] gi|237668530|ref|ZP_04528514.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377511|gb|EDT75065.1| DNA-binding protein [Clostridium butyricum 5521] gi|237656878|gb|EEP54434.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 179 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR+ RM ++QE+L ++ + + E + + L I E+L + + Sbjct: 1 MQIGEKIRILRMEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLPD 60 Query: 73 FFDVSPTV 80 FF + Sbjct: 61 FFSDTKEE 68 >gi|169349918|ref|ZP_02866856.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM 1552] gi|169293486|gb|EDS75619.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM 1552] Length = 194 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGSQIKKFREQQNISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDD 60 Query: 73 FFDVSPTVCSDISSEEN 89 F +I + Sbjct: 61 FIRGDIKEMREIIEKST 77 >gi|206974889|ref|ZP_03235804.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222095479|ref|YP_002529539.1| hypothetical protein BCQ_1819 [Bacillus cereus Q1] gi|206746908|gb|EDZ58300.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221239537|gb|ACM12247.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 146 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLD 59 >gi|153955543|ref|YP_001396308.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855938|ref|YP_002473060.1| hypothetical protein CKR_2595 [Clostridium kluyveri NBRC 12016] gi|146348401|gb|EDK34937.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569662|dbj|BAH07646.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 109 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRIR R+ L ++QEKL E + ++ V + E+G V L I++ L + + Sbjct: 4 IALGKRIREERLKLRLTQEKLAEDVDVSSSYVGQIERGEKSVTLDTLIRITKRLGVTVDY 63 Query: 73 FFDVSPTVCSD 83 S + +D Sbjct: 64 LLKDSVNMEND 74 >gi|159039135|ref|YP_001538388.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917970|gb|ABV99397.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 407 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 3/97 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFF 73 +G+R+ R MSQ+ + LG + V K E+GV R+ S + I++ L + Sbjct: 6 IGRRVAYWRGRRKMSQQVFADRLGKSKSWVDKVERGVRRLDKFSVIYEIADTLRVDVQLL 65 Query: 74 FDVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFI 108 P SD + + + V + + + + Sbjct: 66 LGKDPERRSDALNCIDPSEVQEIRAALERYDAMSAYF 102 >gi|227552156|ref|ZP_03982205.1| transcriptional regulator [Enterococcus faecium TX1330] gi|227178738|gb|EEI59710.1| transcriptional regulator [Enterococcus faecium TX1330] Length = 213 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 34 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 93 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF + S+E++ + + +G +L Sbjct: 94 FFHQEAANLQVVYSKEDHTV-YFDEENGYEL 123 >gi|32479253|gb|AAP83795.1| transcriptional regulator PlcR [Bacillus cereus] Length = 285 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|312126603|ref|YP_003991477.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776622|gb|ADQ06108.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 119 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 RIR R+ G+SQE+LG+ L ++ + + YE G L +++ I + Sbjct: 3 NRIRELRLERGLSQEELGKVLNVSGRTIGHYENGSREPTPEALNKLADFFGVTIDYLLCR 62 Query: 75 -DVSPTVCSDISSEENNVMD 93 DV T D + D Sbjct: 63 TDVRSTEKQDTKDKLQTPAD 82 >gi|302186628|ref|ZP_07263301.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 189 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 2/107 (1%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + P PV +V + +R R +SQ L E G++ + + E G V + L + Sbjct: 4 ENSQRP-PVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRV 62 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +E L+ S +E + + L R + Sbjct: 63 AEALQVAFSDLIQAPENRDYSRINELAWAGTIAGSK-AVLLARAVAR 108 >gi|293365764|ref|ZP_06612471.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291315767|gb|EFE56213.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 71 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R +SQ+ L + +G+ + +E G +++ ++++E I + Sbjct: 7 NRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQISLENAKNVAEYFGVTIDYLLGS 66 Query: 77 SPTV 80 Sbjct: 67 ESDQ 70 >gi|303229090|ref|ZP_07315894.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302516243|gb|EFL58181.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 216 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R + +SQ+++ + LG +F +QK+E G+ +L ++++L I Sbjct: 6 NIRYFRKLRNLSQDEIAKRLGYKSFTTIQKWETGMAEPPVGKLYELADILHVSIMDLLKD 65 Query: 77 SPTVCSDISSEENNVM 92 + ++ N Sbjct: 66 NLDAEEALTVSTNFYH 81 >gi|260462394|ref|ZP_05810602.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259031888|gb|EEW33156.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++L R G++ + L + + K E G L + EVL + I + F Sbjct: 24 LGTRLKLSRQTRGLTLKALATSANCSESLLSKVENGKVSPSLPMLHRLVEVLGTNIGWMF 83 Query: 75 DVSPTVCS---DISSEENNVMDFISTPDGLQLNR 105 + S + +D + +G+ L R Sbjct: 84 EESDGEEGIVFRAGARPLIALDPLRRGEGISLER 117 >gi|228988577|ref|ZP_04148664.1| hypothetical protein bthur0001_52320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771194|gb|EEM19673.1| hypothetical protein bthur0001_52320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 285 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|229176026|ref|ZP_04303521.1| hypothetical protein bcere0006_50950 [Bacillus cereus MM3] gi|228607458|gb|EEK64785.1| hypothetical protein bcere0006_50950 [Bacillus cereus MM3] Length = 285 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|229196060|ref|ZP_04322812.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] gi|228587442|gb|EEK45508.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] Length = 153 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 8 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLD 66 >gi|255280221|ref|ZP_05344776.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255269312|gb|EET62517.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 330 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L + L ++ Q V K+E G + +L +S++ + + Sbjct: 1 MILAEKIMDLRKKNGWSQEELAQQLRVSRQSVSKWEGGQSVPDLDKLLALSQIFGVTLDY 60 Query: 73 FFDVSPTVCSDISSEE 88 V +ISSEE Sbjct: 61 L------VKDEISSEE 70 >gi|152988924|ref|YP_001351041.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964082|gb|ABR86107.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 199 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R G++ L +T + + E+ + L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGLTLAALAAQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSDISS 86 F V + Sbjct: 79 FASEAAVDPADAG 91 >gi|319945875|ref|ZP_08020125.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747940|gb|EFW00184.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 116 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R ++Q + E LGI+ +E+G + L I++VL I + Sbjct: 1 MEFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDY 60 Query: 73 FFDVSPTVCSD 83 D S + Sbjct: 61 LVDNSDEHLKE 71 >gi|317501814|ref|ZP_07960000.1| hypothetical protein HMPREF1026_01944 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088665|ref|ZP_08337575.1| hypothetical protein HMPREF1025_01158 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896847|gb|EFV18932.1| hypothetical protein HMPREF1026_01944 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407188|gb|EGG86691.1| hypothetical protein HMPREF1025_01158 [Lachnospiraceae bacterium 3_1_46FAA] Length = 429 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+ I +R GM+Q+++ E LG+T + V K+E L + + L + Sbjct: 48 GEFIARKRKERGMTQKEMAELLGVTNKAVSKWETSQGMPDIGILPELGKALGVTVDEILM 107 Query: 75 ----DVSPTVCSDISSEENNVMDFI 95 + + +S E+ +++ + Sbjct: 108 GEQIEQEKRAETAVSDEDKKLLEIV 132 >gi|302380564|ref|ZP_07269029.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|303234052|ref|ZP_07320701.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302311507|gb|EFK93523.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302494977|gb|EFL54734.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 179 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ LG++QE+L E +T + + E+ + L ++ L + ++ Sbjct: 1 MEIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDMAT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 FF +V + E+ + +S Sbjct: 61 FFADDLSVKEIFTKEDYQSSEDVSMK 86 >gi|296159361|ref|ZP_06842186.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295890345|gb|EFG70138.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 191 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 7/136 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV V +++G +IR R L + +++ + GI+ + + E+G + L Sbjct: 1 MVLPLNNKAHVAVSIGSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI- 119 I+ L + +F D S + F + F ++ ++ V K+ Sbjct: 61 GIARALGVTVQYFVDTPTEDKSVRRGSDLKYFGFDGS------ANLFGRLTNLSVGSKLE 114 Query: 120 IELVRSIVSSEKKYRT 135 + LVR V T Sbjct: 115 VILVRMPVGQNPSEVT 130 >gi|261345424|ref|ZP_05973068.1| peptidase, S24 family [Providencia rustigianii DSM 4541] gi|282566470|gb|EFB72005.1| peptidase, S24 family [Providencia rustigianii DSM 4541] Length = 230 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R++ +R++L ++Q +L E +G T Q +++ E G + L +++ L + + Sbjct: 1 MSISERVKNKRILLNLTQAELAETVGTTQQSIEQLESGKTK-RPRFLPELAKALSCSVDW 59 Query: 73 FFDVSPTVCSDISSE 87 + E Sbjct: 60 LVTGRENNNDSLPPE 74 >gi|169824259|ref|YP_001691870.1| Cro/CI family transcriptional regulator [Finegoldia magna ATCC 29328] gi|167831064|dbj|BAG07980.1| putative transcriptional regulator Cro/CI family [Finegoldia magna ATCC 29328] Length = 179 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ LG++QE+L E +T + + E+ + L ++ L + ++ Sbjct: 1 MEIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDMAT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 FF +V + E+ + +S Sbjct: 61 FFADDLSVKEIFTKEDYQSSEDVSMK 86 >gi|89890100|ref|ZP_01201611.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89518373|gb|EAS21029.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 193 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 29/70 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R+ GMSQE+L ++ + +Q+ E N LQ I E + I Sbjct: 7 VGTKIKEIRLKKGMSQEELATQSQVSLRTIQRIENNENEPRGKTLQLICETCDINIEELL 66 Query: 75 DVSPTVCSDI 84 D Sbjct: 67 DYGKHEDHQF 76 >gi|27658148|gb|AAO21102.1|U49456_5 unknown [Carnobacterium maltaromaticum] Length = 301 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ +R+ G++Q +L E + T + E G + S L ++E L S + Sbjct: 5 IGEEIKSKRLKRGLTQSQLAENI-CTQATISNLENGASVPTISILLKLAERLNIEFSNIY 63 Query: 75 DVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQID 111 D + + + V + S + L+L +I Sbjct: 64 DYTLDNENKNNPIFKEVRELCSKVKHKEALELLE--TRIK 101 >gi|332687092|ref|YP_004456866.1| Cro/CI family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371101|dbj|BAK22057.1| transcriptional regulator, Cro/CI family [Melissococcus plutonius ATCC 35311] Length = 89 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I + R + M+Q++L +G++ Q + + E+ I++V I F Sbjct: 13 IHVYRAMKRMTQQELANRVGVSRQTIIQLERNKYNPSLLLAHDIADVFGVTIEDIFTFKK 72 Query: 79 TVCSDISSEENN 90 ++ S+E+ N Sbjct: 73 LTDNENSTEQMN 84 >gi|255974976|ref|ZP_05425562.1| predicted protein [Enterococcus faecalis T2] gi|255967848|gb|EET98470.1| predicted protein [Enterococcus faecalis T2] Length = 239 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++RR LG++Q ++ E L +T Q + +E + L +S + E + Sbjct: 1 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDR 60 Query: 73 FFDVSPTVCSDISSEENN 90 T+ +S + Sbjct: 61 LLKEDNTMVEKLSKDIRE 78 >gi|240169850|ref|ZP_04748509.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 474 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDVKV---RQKIIELVRSIV 127 T E D + + ++ + V R+ I + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVGAHPALARAMVNLHRRYRITTAQLAA 124 Query: 128 SSEKKYR 134 ++E+++ Sbjct: 125 ATEERFS 131 >gi|228924097|ref|ZP_04087373.1| hypothetical protein bthur0011_50700 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835587|gb|EEM80952.1| hypothetical protein bthur0011_50700 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 285 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|153949547|ref|YP_001402678.1| DNA binding protein [Yersinia pseudotuberculosis IP 31758] gi|152961042|gb|ABS48503.1| DNA binding protein [Yersinia pseudotuberculosis IP 31758] Length = 118 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 7/111 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R +SQEKLG GI +V +YEKG + ++ + +L P + Sbjct: 4 ERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVPECY 63 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F+ V + + + + F+ PD +L + ++ D ++++ I+EL Sbjct: 64 FYIVDDVFAAAVLQMYHTHQVPFLQHPDYEKLKQA-EKLVD-QLQKLIVEL 112 >gi|42525598|ref|NP_970696.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41815609|gb|AAS10577.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 191 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI++G +IR R + +S +++ + LG+++ + E V + LQ I+ + + Sbjct: 1 MDISIGSKIRALRKVRSISLQQMAKDLGMSYSYLSGLENDKYSVSITNLQKIASYFKVNL 60 Query: 71 SFF 73 F Sbjct: 61 VSF 63 >gi|78222121|ref|YP_383868.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193376|gb|ABB31143.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 181 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 6/119 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RMI ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + ++L + + R+ LV ++ E+ Sbjct: 61 FFSDPIGEDVVYGKDARVQPSADDAAVTVELL-----VPGAQNREMDPALV-TLAPGEE 113 >gi|134287468|ref|YP_001109635.1| putative phage repressor [Burkholderia vietnamiensis G4] gi|134131890|gb|ABO60584.1| putative phage repressor [Burkholderia vietnamiensis G4] Length = 235 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + P D +VG R+ RR LG+SQ++L +G+T + EKG + S + +++ L Sbjct: 1 MAAPAD-SVGARVSARRTELGISQKELARRVGLTQPTISALEKGKSNTSGS-IASLAKAL 58 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 + + + + E V+D Sbjct: 59 GV-VPLWLETGLGDKEPGAREYRRVLD 84 >gi|291540994|emb|CBL14105.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 115 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 4/101 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K D G RI RR +G+SQ++L +GI Q + E G + L + Sbjct: 1 MSSKAQTREKDYERGLRIADRRKAMGLSQDELAHRVGIGRQALSAIENGGD-FKTRTLDN 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ VL + F S++ SE MD +S D LQ Sbjct: 60 LAIVLGVSVDFIMYGKNEENSELLSEA---MDVLSDMDELQ 97 >gi|288870406|ref|ZP_06113975.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867355|gb|EFC99653.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 100 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 9/100 (9%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF---DVSPTV 80 MI+G++QE+L E +G ++ Q E+G + + I+ L + + + T Sbjct: 1 MIMGLTQEELAEKIGRAYKYCQDIERGTCGMSIDTMLSIAACLNISLDYLIYGNNEDSTE 60 Query: 81 CSDISSEENNVMDFIST------PDGLQLNRYFIQIDDVK 114 +D+ +E+ V++ + L L + F++ D + Sbjct: 61 FADLDTEQQAVIEILGNCSHKKKRYALDLLKLFMKACDER 100 >gi|149179178|ref|ZP_01857746.1| transcriptional regulator, XRE family protein [Planctomyces maris DSM 8797] gi|148841996|gb|EDL56391.1| transcriptional regulator, XRE family protein [Planctomyces maris DSM 8797] Length = 160 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VGK+I R MSQE L E G+ + + E G + + L+ I+ L+ I Sbjct: 97 FVGKKIHRYRKAAKMSQEVLSEKTGLPQSHISRLESGKHSPSNATLKKIAAALDIEI 153 >gi|55419793|gb|AAV51967.1| PlcR [Bacillus thuringiensis] Length = 287 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNV-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|261419589|ref|YP_003253271.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297530435|ref|YP_003671710.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|319766405|ref|YP_004131906.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261376046|gb|ACX78789.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|297253687|gb|ADI27133.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] gi|317111271|gb|ADU93763.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 97 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +I+ RR L MSQ++L + +G+ + + E G+ L IS+ L +P Sbjct: 26 IAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|212711611|ref|ZP_03319739.1| hypothetical protein PROVALCAL_02686 [Providencia alcalifaciens DSM 30120] gi|212685713|gb|EEB45241.1| hypothetical protein PROVALCAL_02686 [Providencia alcalifaciens DSM 30120] Length = 90 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +G +I+ R +S +++ +GI Q YEKG +R+ +L+ + E Sbjct: 6 PISEIIGHKIKFLRERKILSLQEVANAIGIDEIQQAHYEKGQSRIPIDKLKQYANYFEIN 65 Query: 70 ISFFF 74 + FF Sbjct: 66 MVTFF 70 >gi|167769076|ref|ZP_02441129.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM 17241] gi|167668716|gb|EDS12846.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM 17241] Length = 184 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G ++ R +S +L E G+T + + E+ + + L+ I+ LE P+ Sbjct: 3 DLDIGSVLQASRGEKKISLRQLAERTGLTASMLSQIERNLVNPSINTLKVIAAALEIPMY 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + + + + + P+ + Sbjct: 63 KFFMGGGADKNLVVRRDARIT--LGRPEAEDIV 93 >gi|146305877|ref|YP_001186342.1| cupin 2 domain-containing protein [Pseudomonas mendocina ymp] gi|145574078|gb|ABP83610.1| Cupin 2, conserved barrel domain protein [Pseudomonas mendocina ymp] Length = 188 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R G + ++ G+T + + E+ + V S L I++ L+ P++ F Sbjct: 6 IGERLRRYRRAAGKTLNQVAAEAGLTASFLSQAERNLTGVSLSSLASIAKALDVPLNVLF 65 Query: 75 DVSPTVCSD 83 D D Sbjct: 66 DQPAQPQPD 74 >gi|219849656|ref|YP_002464089.1| helix-turn-helix domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219543915|gb|ACL25653.1| helix-turn-helix domain protein [Chloroflexus aggregans DSM 9485] Length = 393 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R+R R+ GM+ + L + +T Q + KYE G + LQ +++ L + Sbjct: 2 INQRLRQLRLARGMTLDDLAQATNRIVTRQAISKYEHGQAQPSPIVLQRLAQALGVRPTD 61 Query: 73 FFDVSPTVCS 82 D + T Sbjct: 62 LLDSTNTQIE 71 >gi|319782361|ref|YP_004141837.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168249|gb|ADV11787.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++ +LG+ +G T + + E+G++ S L I+ L ++ F Sbjct: 25 LGDRIKAYRTTRRLTLRQLGDMIGTTASFLSQLERGLSGANTSTLMLIANALGISLADLF 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 D + + + T +G Sbjct: 85 DECEVSPHAVLTRSERPA--LPTSEG 108 >gi|295134500|ref|YP_003585176.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294982515|gb|ADF52980.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 134 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L E LGI+ Q V + E+ N + +L +++ L Sbjct: 8 HIGRKISRIRELRGMKQETLAEELGISQQSVSQMEQNEN-LEDEKLDKVAKALGVSKEAI 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + S +I +V + + G N I+ KI EL + ++ +EK+ Sbjct: 67 KNFSEEAILNIIGNTYHVDNSSAVNYGCTFNPIDKIIEQS---DKIEELYKKLLEAEKEK 123 Query: 134 RTIEEECMVEQ 144 E + ++ Sbjct: 124 VAYLERLLDKK 134 >gi|223985502|ref|ZP_03635559.1| hypothetical protein HOLDEFILI_02865 [Holdemania filiformis DSM 12042] gi|223962519|gb|EEF66974.1| hypothetical protein HOLDEFILI_02865 [Holdemania filiformis DSM 12042] Length = 254 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 47/106 (44%), Gaps = 14/106 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + +R M+Q+ L + L I+ + V K+E+G+N + L +++ L+ ++ + Sbjct: 10 GAFVADQRRQKQMTQKDLAQKLMISDKAVSKWERGLNMPDITLLVPLAQALDVSVAELLE 69 Query: 76 VSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 S+ S + V I+ + +D ++R++ Sbjct: 70 CRRISQSEPMSAHQVDKLVKKAITMSE-----------EDPQMRKR 104 >gi|49658870|emb|CAF28496.1| putative DNA binding protein [Yersinia pseudotuberculosis] Length = 118 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R +SQEKLG GI +V +YEKG + ++ + +L P + Sbjct: 4 ERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVPECY 63 Query: 73 FFDVSPTVCSDI 84 F+ V + + Sbjct: 64 FYIVDDVFAAAV 75 >gi|319950565|ref|ZP_08024474.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] gi|319435759|gb|EFV90970.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] Length = 195 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R M+ +L + GI+ + + E G R L ++ + Sbjct: 12 VGPRLRSLRRHRDMTLAELADKTGISPSTLSRLESGQRRPTLELLLPLARAHGVTLDHLV 71 Query: 75 DVSPTVCSDIS 85 D PT I+ Sbjct: 72 DAPPTGDPRIA 82 >gi|307130525|ref|YP_003882541.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306528054|gb|ADM97984.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 102 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + K + G+R++ R+ G+SQE + G+ + E+GV + Sbjct: 27 MLISMKNTKDISARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIG 86 Query: 61 HISEVLESPISFFFD 75 I++ LE + FD Sbjct: 87 VIADRLEIQLQSLFD 101 >gi|291617399|ref|YP_003520141.1| YdcN [Pantoea ananatis LMG 20103] gi|291152429|gb|ADD77013.1| YdcN [Pantoea ananatis LMG 20103] Length = 181 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 YLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 +++ TP L Y D ++R ++ + + + + Sbjct: 67 VHSGVHPAGEVTCYRQQNAQMAVTP----LLPY-----DARLRFDLLAV--ELAAGAQSD 115 Query: 134 RTIEEECMVEQ 144 T E+ ++EQ Sbjct: 116 STAHEKGVIEQ 126 >gi|237739911|ref|ZP_04570392.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423519|gb|EEO38566.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 184 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 33/73 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDIS 85 + +I Sbjct: 61 LIEDEEDDIRNIE 73 >gi|163943038|ref|YP_001647922.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|83316500|gb|ABC02426.1| PlcR [Bacillus weihenstephanensis] gi|163865235|gb|ABY46294.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 287 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNV-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|242373319|ref|ZP_04818893.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349029|gb|EES40631.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 179 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I ++QE+L E ++ + + E I EVL + S Sbjct: 1 MDIGSKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLSILEVLGTSASD 60 Query: 73 FFDVS 77 FF S Sbjct: 61 FFKES 65 >gi|228994068|ref|ZP_04153969.1| hypothetical protein bpmyx0001_47910 [Bacillus pseudomycoides DSM 12442] gi|228765716|gb|EEM14369.1| hypothetical protein bpmyx0001_47910 [Bacillus pseudomycoides DSM 12442] Length = 296 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RM+ G++Q++L E + +V + E G LQ I+ L PI F+ Sbjct: 6 LGAEIKKIRMLRGLTQKQLSENI-CHQSEVSRIESGTVYPSMDILQGIAAKLRVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|229101946|ref|ZP_04232660.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-28] gi|228681529|gb|EEL35692.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-28] Length = 69 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I + F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEYVF 60 >gi|270208615|ref|YP_003329386.1| hypothetical protein pSmeSM11ap088 [Sinorhizobium meliloti] gi|76880889|gb|ABA56059.1| hypothetical protein [Sinorhizobium meliloti] Length = 165 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE-S 68 VD + ++ R G+S+ L LG++ +YE+G R+ RL H+ E++ Sbjct: 40 VDEKISAWLKKTREAKGISRADLAHLLGLSVSVYGRYERGSEARLSIPRLIHLCEIMGFM 99 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 P+ FD +P + E + + + + L +R +I L+R + Sbjct: 100 PLDVIFDTAPHLWGKTLEEAEDRLTLMKLVEEL---------PQDTMRD-LIRLLRRMTP 149 Query: 129 SE 130 E Sbjct: 150 GE 151 >gi|83316484|gb|ABC02417.1| PlcR [Bacillus weihenstephanensis] Length = 287 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNV-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|37650512|emb|CAE47445.1| PlcR protein [Bacillus thuringiensis serovar silo] Length = 285 Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|227505625|ref|ZP_03935674.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227197778|gb|EEI77826.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 468 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S + D I + Sbjct: 65 ------SRDDDSRLLAEIQDVIQDKE 84 >gi|283796605|ref|ZP_06345758.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] gi|291076025|gb|EFE13389.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] Length = 177 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 34/62 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MSIGAKLKELRVLKGLTQEELADRAELSKGFISQVERDLTSPSIATLMDILQCLGTTIGE 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|224537568|ref|ZP_03678107.1| hypothetical protein BACCELL_02447 [Bacteroides cellulosilyticus DSM 14838] gi|224520810|gb|EEF89915.1| hypothetical protein BACCELL_02447 [Bacteroides cellulosilyticus DSM 14838] Length = 191 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L E G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKSLRESQSISIEQLAERSGLAVEQIERIENNIDLPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCSDI 84 D I Sbjct: 67 DDQDETGPAI 76 >gi|83590463|ref|YP_430472.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573377|gb|ABC19929.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 300 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +G +++ R +G++Q++L + +GI+ + + E + S L ++E L +F Sbjct: 140 LGAKLKRLREKIGLTQKELAQQVGISHSLIGQIETDRIQPSLSTLSSLAEALGVSTCYFL 199 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 + E ++ + + P Sbjct: 200 MEDDEEDLYLDYRLEADIREALRRP 224 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 36/66 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R G+ E+L + L I + + E+G R+ + L+ ++ +L +S+ Sbjct: 1 MTIGEKLKKLREDRGIPLEELADRLDIAPACMVEVEQGTRRLSLATLKEVAAILGVDVSY 60 Query: 73 FFDVSP 78 F + + Sbjct: 61 FQEEND 66 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D +VG R+R R G++ +L G++ + + E+ + L+ ++ VLE Sbjct: 67 NKNDNSVGARLRRLREQKGITLSELSRRSGVSLAHISEIERSRSTASLKTLEKLAAVLEV 126 Query: 69 PIS 71 S Sbjct: 127 STS 129 >gi|15640206|ref|NP_229833.1| transcriptional regulator, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229509387|ref|ZP_04398870.1| hypothetical protein VCE_000787 [Vibrio cholerae B33] gi|229516334|ref|ZP_04405782.1| hypothetical protein VCC_000348 [Vibrio cholerae RC9] gi|229605680|ref|YP_002876384.1| hypothetical protein VCD_000628 [Vibrio cholerae MJ-1236] gi|229606525|ref|YP_002877173.1| hypothetical protein VCD_001434 [Vibrio cholerae MJ-1236] gi|254851305|ref|ZP_05240655.1| transcriptional regulator [Vibrio cholerae MO10] gi|9654580|gb|AAF93352.1| transcriptional regulator, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229346760|gb|EEO11730.1| hypothetical protein VCC_000348 [Vibrio cholerae RC9] gi|229353702|gb|EEO18639.1| hypothetical protein VCE_000787 [Vibrio cholerae B33] gi|229369180|gb|ACQ59603.1| hypothetical protein VCD_001434 [Vibrio cholerae MJ-1236] gi|229372166|gb|ACQ62588.1| hypothetical protein VCD_000628 [Vibrio cholerae MJ-1236] gi|254847010|gb|EET25424.1| transcriptional regulator [Vibrio cholerae MO10] Length = 102 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+ LG +G+ ++ +YEKG + L+ I++ L P+++F Sbjct: 10 RLKEARKKAKLSQKALGVRIGMDESSASPRMNQYEKGKHTPDVQTLKLIADELGVPLNYF 69 Query: 74 FDVSPTVCS 82 F Sbjct: 70 FCEDDESAE 78 >gi|323693566|ref|ZP_08107769.1| DNA-binding protein [Clostridium symbiosum WAL-14673] gi|323502374|gb|EGB18233.1| DNA-binding protein [Clostridium symbiosum WAL-14673] Length = 250 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R G SQE+LG +G+T Q V K+E G ++L +S + E + Sbjct: 5 EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVD 59 >gi|323485059|ref|ZP_08090412.1| DNA-binding protein [Clostridium symbiosum WAL-14163] gi|323401615|gb|EGA93960.1| DNA-binding protein [Clostridium symbiosum WAL-14163] Length = 250 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R G SQE+LG +G+T Q V K+E G ++L +S + E + Sbjct: 5 EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVD 59 >gi|221195296|ref|ZP_03568352.1| transcriptional regulator [Atopobium rimae ATCC 49626] gi|221185199|gb|EEE17590.1| transcriptional regulator [Atopobium rimae ATCC 49626] Length = 142 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R SQE+L + +G++ Q + KYE G + + +H++ V I Sbjct: 5 ENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKHLANVFGVTIDDLISY 64 Query: 77 SPTVCSDIS 85 ++ Sbjct: 65 DKKNEDNLG 73 >gi|145595679|ref|YP_001159976.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305016|gb|ABP55598.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 83 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI + R G+S+ +L + LG+ +Q + E+G R I+ E P+ F Sbjct: 5 VHNRIAVLRAERGISRRQLADALGVHYQTIGYLERGEFRPSLHLALRIAAYFEVPVEVVF 64 Query: 75 DVSP 78 + P Sbjct: 65 SIEP 68 >gi|319936780|ref|ZP_08011192.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] gi|319808048|gb|EFW04620.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] Length = 191 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I R ++Q++L +GI+ + + K+E+G+ S L+ +SE+ + I Sbjct: 6 VGDLIYRLRKEKQLTQKELANQIGISDKTISKWERGLGCPDVSLLKDLSEIFQINIEKIL 65 Query: 75 DV 76 D Sbjct: 66 DG 67 >gi|307267664|ref|ZP_07549123.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306917316|gb|EFN47631.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 427 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 7/96 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ +SQ +L ++ + + E G +L +++E LE P+S+FF Sbjct: 5 IGDKIKALRLQKNLSQSELCGNF-MSRVVLSRIESGKALPSLEQLAYLAEKLEVPVSYFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S + + ++++ L L + + +I Sbjct: 64 SDSTGEKYILFEKNSSLLK------DLFLAKDYYEI 93 >gi|289651209|ref|ZP_06482552.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 117 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS + Sbjct: 7 YVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 66 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 DV T + + + +P+ L+ F+ Sbjct: 67 LPGGQDVLRTRLISLRQAIADKAIEVDSPESLEEILAFM 105 >gi|260589839|ref|ZP_05855752.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325662733|ref|ZP_08151327.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] gi|260539646|gb|EEX20215.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325470970|gb|EGC74198.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] Length = 143 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG++IR R+ G +Q++L G++ ++ YE G + +L+ I+ L+ Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP 58 >gi|238923032|ref|YP_002936545.1| hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] gi|238874704|gb|ACR74411.1| Hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] Length = 147 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG++IR R+ G +Q++L G++ ++ YE G + +L+ I+ L+ Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP 58 >gi|257063020|ref|YP_003142692.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790673|gb|ACV21343.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 215 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 ++ R + G++QE+L + GI+ + +Q+YE K VN+ I+ VL S Sbjct: 151 NLKRLRKLSGLTQEQLAQLSGISVRTIQQYEQRRKDVNKASLETAVAIATVLHCSPSDLL 210 Query: 75 D 75 + Sbjct: 211 E 211 >gi|160879161|ref|YP_001558129.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427827|gb|ABX41390.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 370 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 30/153 (19%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G++Q++L + LG+TFQ V K+E + L I++ + + + Sbjct: 8 KIAQLRKRKGVNQQELADFLGVTFQSVSKWETKTTLPDITLLPLIADYFQVSVDELLGLK 67 Query: 78 P--------------TVCSDISSEENNVMDFISTPDGLQ-LNRYFIQIDDV--------- 113 P D + N F D L L R I + Sbjct: 68 PIKDLQYMPRNTDNRENWKDRADVIENDRQFFWNEDYLNYLIREVWAIKEPIDIIEFCCC 127 Query: 114 --KVRQKIIELVRSIVSSEKKYRTIEEECMVEQ 144 + ++I+ L+ + Y ++ EC+VE+ Sbjct: 128 DGDLGKRILPLL----PAGSTYTGVDSECLVEK 156 >gi|86742835|ref|YP_483235.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86569697|gb|ABD13506.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 403 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +G R+ R+ M+Q +L E G++ V K E+G + + S L ++ L+ P + Sbjct: 5 RALGDRVAQVRVRRSMTQTELAERAGVSTDLVTKLEQGQRDGIRISTLHSLARALDVPTA 64 Query: 72 FFFDVSPTV 80 FF+V Sbjct: 65 TFFEVEQEE 73 >gi|206975897|ref|ZP_03236808.1| putative transcriptional regulator PlcR [Bacillus cereus H3081.97] gi|217962840|ref|YP_002341418.1| putative transcriptional regulator PlcR [Bacillus cereus AH187] gi|222098822|ref|YP_002532880.1| transcription activator [Bacillus cereus Q1] gi|229142093|ref|ZP_04270618.1| hypothetical protein bcere0013_51790 [Bacillus cereus BDRD-ST26] gi|37650600|emb|CAE46797.1| PlcR protein [Bacillus thuringiensis] gi|73697823|gb|AAZ81519.1| PlcR [Bacillus cereus] gi|206745991|gb|EDZ57387.1| putative transcriptional regulator PlcR [Bacillus cereus H3081.97] gi|217066150|gb|ACJ80400.1| putative transcriptional regulator PlcR [Bacillus cereus AH187] gi|221242881|gb|ACM15591.1| transcription activator [Bacillus cereus Q1] gi|226694165|gb|ACO72984.1| PlcR [Bacillus sp. 1N21] gi|228641382|gb|EEK97688.1| hypothetical protein bcere0013_51790 [Bacillus cereus BDRD-ST26] gi|324329300|gb|ADY24560.1| transcription activator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 285 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|322436743|ref|YP_004218955.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321164470|gb|ADW70175.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 73 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R G SQE+L E G+ V E+G VG + +++ L F+ Sbjct: 11 GKSIRTLREERGYSQEELAERAGLHRNYVGGIERGERNVGLENIVKLAKALSVKSRDLFE 70 Query: 76 VSP 78 P Sbjct: 71 SLP 73 >gi|313906668|ref|ZP_07839986.1| plasmid maintenance system antidote protein, XRE family [Eubacterium cellulosolvens 6] gi|313468490|gb|EFR63874.1| plasmid maintenance system antidote protein, XRE family [Eubacterium cellulosolvens 6] Length = 107 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG RI+ R G +QE+L L + + YE V A L +S + + Sbjct: 4 VGGRIKKLRTDAGYTQEELAIELHLEGKSAISNYENNSRGVSAEMLTQLSRLFHVSADYI 63 Query: 74 FDV-SPTVCSDISSEENNVMDFI----STPDGLQLNR 105 + SP I +E +++ + + L+L R Sbjct: 64 LNGDSPDNLDHIVNEAIEILNNLKTDKAKKSALELLR 100 >gi|295401783|ref|ZP_06811748.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|312112235|ref|YP_003990551.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|294976150|gb|EFG51763.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|311217336|gb|ADP75940.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 97 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +I+ RR L M+Q++L + +G+ + + E G+ L IS+ L +P Sbjct: 26 IAAQIKTRRKQLNMTQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|229199476|ref|ZP_04326137.1| hypothetical protein bcere0001_49740 [Bacillus cereus m1293] gi|228583881|gb|EEK42038.1| hypothetical protein bcere0001_49740 [Bacillus cereus m1293] Length = 285 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|167032895|ref|YP_001668126.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859383|gb|ABY97790.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 104 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R + G++Q +L E G + + ++E L ++VL FF Sbjct: 6 LGFALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDALMEFAQVLGVKPKDFF 65 Query: 75 DVSPTVCSDIS 85 + Sbjct: 66 AEPDDEEEQRA 76 >gi|331086470|ref|ZP_08335549.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410528|gb|EGG89956.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG++IR R+ G +Q++L G++ ++ YE G + +L+ I+ L+ Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP 58 >gi|294101545|ref|YP_003553403.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616525|gb|ADE56679.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 123 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R ++Q+ L + ++ +Q E L +++ L+ I+ Sbjct: 1 MSLGIRIKTLRKAARLTQQALADKTDVSRIYIQALESNRRLPSMKLLSKLAQALDVEITD 60 Query: 73 FFDVSPTVCSDISSEEN 89 +P+ S E Sbjct: 61 LVKGTPSDESGRIHLEE 77 >gi|259047950|ref|ZP_05738351.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] gi|259035370|gb|EEW36625.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] Length = 166 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I R G SQE L E + ++ Q + K+E G ++ +S + + + Sbjct: 6 EKIYNLRKEKGWSQETLAEQIKVSRQSISKWESGQAVPEIEKIIELSTIFQVTTDYLLLD 65 Query: 77 SPTVCSD 83 T S Sbjct: 66 ENTTKSQ 72 >gi|229193603|ref|ZP_04320547.1| hypothetical protein bcere0002_52470 [Bacillus cereus ATCC 10876] gi|228589908|gb|EEK47783.1| hypothetical protein bcere0002_52470 [Bacillus cereus ATCC 10876] Length = 285 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|225405526|ref|ZP_03760715.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] gi|225042938|gb|EEG53184.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] Length = 257 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G+SQE+LG +G+T Q V K+E G +L +S+ + I Sbjct: 11 EQLIKLRKQKGLSQEQLGAAVGVTRQTVSKWELGDTTPELGKLVQLSDYFQLSIDELVGH 70 Query: 77 SPTVCSDISSEEN 89 + D + E N Sbjct: 71 AAENDGDRTVELN 83 >gi|225570227|ref|ZP_03779252.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM 15053] gi|225161022|gb|EEG73641.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM 15053] Length = 195 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R +SQE+L + ++ Q V +E + L +S V + Sbjct: 1 MDIGLRIKKLREQQKISQEELALKIFVSRQTVSNWETNKSCPDVKSLIILSNVFNVSLDS 60 Query: 73 FFDVSPTVCSDISSEEN 89 F +I + Sbjct: 61 FIKEDIKEMREIVEKAA 77 >gi|154501020|ref|ZP_02039058.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] gi|150270044|gb|EDM97563.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] Length = 114 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 19/119 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G RI R + G+SQ L E ++ + E+G+ + L I+E L+ P Sbjct: 7 RNIGVRIHNLRKLRGLSQAALAERAELSTPYISHIERGMKLLSLPALLRIAEALDIPPGT 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + P + E ++D S + RQ I +LV + + E Sbjct: 67 LLN-DPNTPGNSHLEFAFLLDACSPVE----------------RQVIYDLV--LAAKES 106 >gi|30023380|ref|NP_835011.1| transcriptional activator plcR [Bacillus cereus ATCC 14579] gi|229130599|ref|ZP_04259555.1| hypothetical protein bcere0015_50320 [Bacillus cereus BDRD-Cer4] gi|296505774|ref|YP_003667474.1| transcriptional activator PlcR [Bacillus thuringiensis BMB171] gi|5305719|gb|AAD41788.1|AF132087_1 PlcR [Bacillus cereus ATCC 14579] gi|6759484|emb|CAB69810.1| positive transcriptional regulator PlcR [Bacillus cereus ATCC 14579] gi|29898941|gb|AAP12212.1| Transcriptional activator plcR [Bacillus cereus ATCC 14579] gi|55419779|gb|AAV51960.1| PlcR [Bacillus weihenstephanensis] gi|228652938|gb|EEL08820.1| hypothetical protein bcere0015_50320 [Bacillus cereus BDRD-Cer4] gi|296326826|gb|ADH09754.1| transcriptional activator plcR [Bacillus thuringiensis BMB171] Length = 285 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|328885628|emb|CCA58867.1| Transcriptional regulator, XRE family [Streptomyces venezuelae ATCC 10712] Length = 476 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 18/128 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R GM+Q +L LG++ + + E + A L I+EV FF + Sbjct: 13 AKLRRLRRERGMNQVELARALGLSTSYLNQIEHSQRPLTAPVLLRIAEVFGVDPEFFSEA 72 Query: 77 SPTVCS---DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL----------V 123 + + + I+ + + R D +V + ++ L V Sbjct: 73 EEERLATDLRAALGDEACGAPIAQDEIADVAR-----DHPEVARALVTLHQRYRDASERV 127 Query: 124 RSIVSSEK 131 ++ S E Sbjct: 128 AALASPED 135 >gi|229591296|ref|YP_002873415.1| putative transcriptional regulator [Pseudomonas fluorescens SBW25] gi|229363162|emb|CAY50204.1| putative transcriptional regulator [Pseudomonas fluorescens SBW25] Length = 191 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 10/117 (8%) Query: 5 KKIPN--PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K+ P+ V +V + +R R +SQ L E G++ + + E G V S L + Sbjct: 7 KENPHRASVLQHVSQNVRRLRHAADLSQTALSEKSGVSRRMLVAIEAGEKNVSLSTLDRV 66 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +E L S +E + + + L + R+++ Sbjct: 67 AEALNVAFSDLIQAPDAPDHSRINELAWAGEIPGSK-AVLLAKA-------NARREV 115 >gi|238855117|ref|ZP_04645443.1| transcriptional regulator [Lactobacillus jensenii 269-3] gi|260664949|ref|ZP_05865800.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|282934259|ref|ZP_06339534.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|313472503|ref|ZP_07812993.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|238832257|gb|EEQ24568.1| transcriptional regulator [Lactobacillus jensenii 269-3] gi|239529936|gb|EEQ68937.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|260561432|gb|EEX27405.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|281301668|gb|EFA93937.1| transcriptional regulator [Lactobacillus jensenii 208-1] Length = 136 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 12/94 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R +SQE + L I+ Q + K+E G +L +S++ + + Sbjct: 6 ERLKTLRESSNLSQEDVANKLKISRQSISKWELGDAVPDIGKLMELSKIYNVSLDYL--- 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 V D S + N T + L+ R QI Sbjct: 63 ---VGRDSSEKVKN------TKEALRKKRNASQI 87 >gi|259909801|ref|YP_002650157.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|259909810|ref|YP_002650166.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965423|emb|CAX56955.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965432|emb|CAX56964.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 130 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI R ++Q +L E LGI Q + YE G +V A+ L ++++L + Sbjct: 22 KQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGGKLKVSAALLPQLAQILNLSLD 80 >gi|182435303|ref|YP_001823022.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775942|ref|ZP_08235207.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] gi|178463819|dbj|BAG18339.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656275|gb|EGE41121.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] Length = 509 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E L + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|163790911|ref|ZP_02185335.1| DNA-binding protein [Carnobacterium sp. AT7] gi|159873864|gb|EDP67944.1| DNA-binding protein [Carnobacterium sp. AT7] Length = 180 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ ++QE+L E ++ + + E+ ++ I EVL Sbjct: 1 MEIGNQIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKD 60 Query: 73 FFDVSPTVCSDISSEEN 89 FFD + +++ Sbjct: 61 FFDEKQEEQRVVYTKDE 77 >gi|229541873|ref|ZP_04430933.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326293|gb|EEN91968.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 180 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 41/75 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K+IR R+ G++ ++L E +T + + E+G + + + L+ I++ L IS+ Sbjct: 2 IEIHKKIRELRLQKGLTLKQLSEKTNLTIGFLSQVERGTSSLAITSLKKIADSLGVEISY 61 Query: 73 FFDVSPTVCSDISSE 87 FF+ + T + E Sbjct: 62 FFNPTITAHYAVKKE 76 >gi|72161782|ref|YP_289439.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71915514|gb|AAZ55416.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 481 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 8 PNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+ +D + G+R+R R M+ +LGE +G Q+ E G S L +++ L Sbjct: 5 PSDLDLVTFGQRLRHLRRARNMTLAELGERVGRAPSQLSLLENGKREPKLSLLTALAKAL 64 Query: 67 ESPI 70 + + Sbjct: 65 DVSV 68 >gi|69246897|ref|ZP_00604172.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257879186|ref|ZP_05658839.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881995|ref|ZP_05661648.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890016|ref|ZP_05669669.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615585|ref|ZP_05713355.1| transcriptional regulator, xre family protein [Enterococcus faecium DO] gi|260560167|ref|ZP_05832344.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|293559524|ref|ZP_06676061.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1162] gi|294621805|ref|ZP_06700963.1| transcriptional regulator, xre family, putative [Enterococcus faecium U0317] gi|314947447|ref|ZP_07850866.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|68195026|gb|EAN09490.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257813414|gb|EEV42172.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817653|gb|EEV44981.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826376|gb|EEV53002.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073734|gb|EEW62059.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291598588|gb|EFF29647.1| transcriptional regulator, xre family, putative [Enterococcus faecium U0317] gi|291606586|gb|EFF35983.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1162] gi|313646105|gb|EFS10685.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 221 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G++IR R ++Q++LGE +G++ + + +E L + L PI F Sbjct: 1 MNTGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 P++ S S E + D Sbjct: 61 -----PSIESATESIEPTLPD 76 >gi|307244113|ref|ZP_07526231.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492484|gb|EFM64519.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] Length = 179 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++QE+L ++ + + E + + L I E+L + + Sbjct: 1 MEIGEKLRRLRTEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLRD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + V ++ E+++ + Sbjct: 61 FF--ADEVNEKVTFAEDDMFE 79 >gi|295107703|emb|CBL05246.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 143 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 12/96 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R G + E+ E LGI+ ++KYE G + I+ L S Sbjct: 1 MKIGEKIHRIRKERGYTAEQFAEMLGISTVSLRKYEYGERTPKEPMITEIARRLGVNPS- 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 ++ SD ++ N+ + + +L F Sbjct: 60 ------SLKSDWGNDANDAIHML-----FELEEAFC 84 >gi|268686373|ref|ZP_06153235.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|268626657|gb|EEZ59057.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] Length = 138 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R+ LG++Q + E G + + K+E+G NR + +L S++ I + Sbjct: 20 GKRLKEERIKLGLNQAEAAEKCGFSREMWGKWERGENRPSSEKLFSFSKI-GIDIDYVMH 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + SE + + +L F Q+ R+++ + + EKK +T Sbjct: 79 GRRGETAAMPSES-------LSAEEKELLALFRQLGSGS-RKELADYAAFKLVVEKKAQT 130 Query: 136 IE 137 Sbjct: 131 AL 132 >gi|227115337|ref|ZP_03828993.1| hypothetical protein PcarbP_20370 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 86 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R+ ++QEKLG GI +V +YE G++R + ++VL P + Sbjct: 4 ARLKTARLRAHLTQEKLGVLAGIEEETARSRVSQYEGGIHRPTFEMMCAFAKVLNVPECY 63 Query: 73 FFDVSPTVCS 82 F+ V+ Sbjct: 64 FYTVNDDFAE 73 >gi|37527342|ref|NP_930686.1| hypothetical protein plu3469 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786776|emb|CAE15842.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 399 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+ R G+S+ LG + + + K+E G + A L +S++L P+S+F Sbjct: 11 ERLTQIREARGLSKINLGRLVDRSPSTITKWENGNHSPDAEVLHSLSQILNCPVSWF 67 >gi|294783001|ref|ZP_06748325.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] gi|294479879|gb|EFG27656.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] Length = 184 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 33/73 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDIS 85 + +I Sbjct: 61 LIEDEEDDIRNIE 73 >gi|291523917|emb|CBK89504.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528619|emb|CBK94205.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 213 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ M+QE++ E LG++ Q + +E + + +S+ E+ + + Sbjct: 5 IGSKIKAARLKKKMTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSDYYEASLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVM 92 + + D E NV+ Sbjct: 65 KGEQKMNTYYDYLEESTNVV 84 >gi|268609658|ref|ZP_06143385.1| HTH domain protein [Ruminococcus flavefaciens FD-1] Length = 298 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 16/104 (15%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + RR LG++QE+L L ++ Q V K+E L I+ L + F + Sbjct: 9 KNLVKRRKELGLTQEQLAVRLNVSPQAVSKWENSS-YPDGELLPRIARELNISLDALFGI 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I + E ++ +S ++I + R ++ Sbjct: 68 K------IENNERDIEKLVSDE---------MRITPPEKRAELF 96 >gi|257792297|ref|YP_003182903.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317490218|ref|ZP_07948706.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] gi|257476194|gb|ACV56514.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316910712|gb|EFV32333.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG RIR R +SQ+KL + + + K E G ++ IS+ L + F Sbjct: 8 FVGNRIRELRKSQKLSQQKLALMVNVERSYLAKIEGGKRNPSLECIEKISKGLGLSLEEF 67 Query: 74 FDV 76 F Sbjct: 68 FKG 70 >gi|167758839|ref|ZP_02430966.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC 35704] gi|167663579|gb|EDS07709.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC 35704] Length = 350 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + + IR RR + ++QE++ LG++ V K+E G + + L ++ +L + ++ Sbjct: 1 MKINEMIRTRRKEMNLTQEQVASRLGVSAPAVHKWETGNSYPDITLLPALARLLGTDLN 59 >gi|319426396|gb|ADV54470.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] gi|319426403|gb|ADV54477.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 182 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 38/58 (65%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +++++G ++ RR+ L + QE + E LG+T Q V K+E+ + AS++ +S++L+ Sbjct: 4 LNMSIGSVLKDRRIALNIKQEDIAEQLGLTVQTVSKWERDLTEPKASQVTQLSKILKI 61 >gi|114569052|ref|YP_755732.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339514|gb|ABI64794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 68 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R G SQ+ L + L ++ Q V E G ++ + PI FD Sbjct: 3 NQLRELRGEKGWSQQALADHLDVSRQTVNALETGKYDPSLPLAFKLARLFGEPIESIFDD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|300785112|ref|YP_003765403.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794626|gb|ADJ45001.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R GM+ + G++ + + E G R G L ++ + P+ Sbjct: 12 VGPRLRALRRHRGMTLADVAAATGVSESTLSRLESGQRRAGLELLLPLARAYDVPLDDL 70 >gi|257125192|ref|YP_003163306.1| XRE family transcriptional regulator [Leptotrichia buccalis C-1013-b] gi|257049131|gb|ACV38315.1| transcriptional regulator, XRE family [Leptotrichia buccalis C-1013-b] Length = 255 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++ R+ M+Q +L E LGI+ +QKYE G ++ + + ++ + Sbjct: 1 MKINEKLKDLRLKNNMTQRELAEKLGISIPTLQKYEYGTLKIKNEVILSLCDIFDISPDD 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF+ +DI E +N++ Sbjct: 61 FFN---EKRNDIFKETDNLL 77 >gi|311741010|ref|ZP_07714835.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303812|gb|EFQ79890.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 492 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 28 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 87 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S + D I + Sbjct: 88 ------SRDDDSRLLAEIQDVIQDKE 107 >gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849947|gb|EEX69954.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 164 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ R++ R GM ++++ E LGIT Q YE G S L +S++ + P+ Sbjct: 8 MDMVFANRLKEVRERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKLSKIFDIPV 67 Query: 71 S 71 Sbjct: 68 D 68 >gi|212635362|ref|YP_002311887.1| Repressor of flagellae [Shewanella piezotolerans WP3] gi|212556846|gb|ACJ29300.1| Repressor of flagellae, putative [Shewanella piezotolerans WP3] Length = 116 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPIS 71 + +G+ I+L+R LGM++ +L + G++ Q+ + E+G N L IS L + I Sbjct: 1 MTIGENIKLKRKSLGMTRSELIDRSGVSTAQLSRMERGEQNNPNLETLVAISTALNTSID 60 >gi|206975059|ref|ZP_03235973.1| HTH-type transcriptional regulator xre (Putative PbsX repressor) [Bacillus cereus H3081.97] gi|217959610|ref|YP_002338162.1| putative DNA-binding protein [Bacillus cereus AH187] gi|229138835|ref|ZP_04267416.1| transcriptional regulator [Bacillus cereus BDRD-ST26] gi|206746480|gb|EDZ57873.1| HTH-type transcriptional regulator xre (Putative PbsX repressor) [Bacillus cereus H3081.97] gi|217065315|gb|ACJ79565.1| putative DNA-binding protein [Bacillus cereus AH187] gi|228644751|gb|EEL01002.1| transcriptional regulator [Bacillus cereus BDRD-ST26] Length = 117 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ G+SQ++L + +G++ V Y +G + G LQ I++ L+ + V Sbjct: 5 ERLKSLIDKKGISQQQLADAIGVSHVSVYNYVEGKKKPGIRTLQKIAKHLKVTTDYLLGV 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S S D T + ++ + + + K R+K +E + V+ EK R Sbjct: 65 SD------SPHLTADQDLQLTKEAQEILQIINDLPE-KQRKKALEQLEMFVNYEKTKR 115 >gi|126179762|ref|YP_001047727.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862556|gb|ABN57745.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 69 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R + ++QE L LG+T Q + EKG I+ I F Sbjct: 3 NRIKVYRAMHDLTQEGLANELGVTRQTILAIEKGKYDPSLELAFKIAGFFGVTIEDIF 60 >gi|55419781|gb|AAV51961.1| PlcR [Bacillus cereus] Length = 285 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|288960685|ref|YP_003451025.1| transcriptional regulator [Azospirillum sp. B510] gi|288912993|dbj|BAI74481.1| transcriptional regulator [Azospirillum sp. B510] Length = 220 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L ++ L GI+ + K E G + LQ ++ L PI+ F Sbjct: 37 LGVQIRSLRRHLDLTVADLAAAAGISTGMLSKIENGQISPSLASLQALAGALNVPITALF 96 >gi|251779375|ref|ZP_04822295.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083690|gb|EES49580.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 115 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G++Q L LG + Q+ YE+G L I++ + + Sbjct: 9 ERLVTLRKEKGLTQYDLATQLGFSRGQIGNYEQGSREPDQETLLKIAKFFNVSSDYLLGI 68 Query: 77 SPTVCSDISSEENNVMDFIST 97 S +++N V + + Sbjct: 69 SDKRNY---TDDNEVTIALHS 86 >gi|228911190|ref|ZP_04074995.1| hypothetical protein bthur0013_53290 [Bacillus thuringiensis IBL 200] gi|228848366|gb|EEM93215.1| hypothetical protein bthur0013_53290 [Bacillus thuringiensis IBL 200] Length = 285 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|225018471|ref|ZP_03707663.1| hypothetical protein CLOSTMETH_02418 [Clostridium methylpentosum DSM 5476] gi|224948780|gb|EEG29989.1| hypothetical protein CLOSTMETH_02418 [Clostridium methylpentosum DSM 5476] Length = 79 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R LG++Q++LGE +G++ Q V E I++V E I F F Sbjct: 6 NRIKEFREKLGLTQKRLGELIGVSRQAVNAIETEKFEPSIWIAYDIAKVFECAIEDVFLF 65 Query: 75 DVSPT 79 + SP Sbjct: 66 EDSPH 70 >gi|222151919|ref|YP_002561079.1| hypothetical protein MCCL_1676 [Macrococcus caseolyticus JCSC5402] gi|222121048|dbj|BAH18383.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 283 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 8/101 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ RR L M+Q +L + + T Q+ K EK AS L I+E LE + Sbjct: 1 MKIGKRIKNRRQQLNMTQGELSDGI-CTQSQISKIEKDEIIPLASLLVKIAEKLEVSLDD 59 Query: 73 F-FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++ + + +D++ R + +I + Sbjct: 60 LVYENRIKRIENEFLIDKERIDYLLK------IREYGKIQN 94 >gi|168214024|ref|ZP_02639649.1| HTH-type transcriptional regulator HipB [Clostridium perfringens CPE str. F4969] gi|170714468|gb|EDT26650.1| HTH-type transcriptional regulator HipB [Clostridium perfringens CPE str. F4969] Length = 64 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPI-SFFFD 75 +I+L+R+ G++Q++L +GI+ + K+E G + + ++ L++ + FF Sbjct: 2 KIKLKRISKGLTQKELANKVGISHVTLSKFENGSYENITLRTMLKLAAALDTTVHELFFS 61 Query: 76 VSP 78 Sbjct: 62 DEE 64 >gi|218233887|ref|YP_002370127.1| putative transcriptional regulator PlcR [Bacillus cereus B4264] gi|229153513|ref|ZP_04281691.1| hypothetical protein bcere0011_50430 [Bacillus cereus m1550] gi|37650516|emb|CAE47447.1| PlcR protein [Bacillus thuringiensis] gi|37650608|emb|CAE46801.1| PlcR protein [Bacillus thuringiensis] gi|218161844|gb|ACK61836.1| putative transcriptional regulator PlcR [Bacillus cereus B4264] gi|228630117|gb|EEK86768.1| hypothetical protein bcere0011_50430 [Bacillus cereus m1550] Length = 285 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|229072817|ref|ZP_04206016.1| hypothetical protein bcere0025_49770 [Bacillus cereus F65185] gi|229082564|ref|ZP_04215027.1| hypothetical protein bcere0023_51810 [Bacillus cereus Rock4-2] gi|37650620|emb|CAE46901.1| transcriptional regulator [Bacillus thuringiensis] gi|228700996|gb|EEL53519.1| hypothetical protein bcere0023_51810 [Bacillus cereus Rock4-2] gi|228710308|gb|EEL62283.1| hypothetical protein bcere0025_49770 [Bacillus cereus F65185] Length = 285 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|255324218|ref|ZP_05365340.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] gi|255298734|gb|EET78029.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] Length = 492 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 28 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 87 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S + D I + Sbjct: 88 ------SRDDDSRLLAEIQDVIQDKE 107 >gi|251782374|ref|YP_002996676.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391003|dbj|BAH81462.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127256|gb|ADX24553.1| Phage transcriptional repressor [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 230 Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ +SQE+LG+ L + + +EKG N + + + +F Sbjct: 4 GDQLKTARLAKQLSQEELGQLLNVNKMTISNWEKGKNTPNQKHFEQLLSLFGVTADYF 61 >gi|331085146|ref|ZP_08334232.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407929|gb|EGG87419.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 106 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R+ ++QE + + I + E +V S L I L++ + + Sbjct: 9 IGEKLRTIRLSKNLTQEYIANAVDINTSHISNIENNRVKVSLSTLVQICNALDTTVDYVL 68 Query: 75 DVSPTVCSDISSEE 88 T S +E Sbjct: 69 SEEYTDSSSAIEQE 82 >gi|311900507|dbj|BAJ32915.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 192 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L+ Sbjct: 5 PGDLDGLVRKRIRALRVAQGWSLEELAARANLSQSSLSRIENGQRRLALDQLVTLANALD 64 Query: 68 SPISFFFDVSPT 79 + + + + Sbjct: 65 TTLDQLVETAAE 76 >gi|325674671|ref|ZP_08154358.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554257|gb|EGD23932.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 85 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++Q +L + GI+ + + E G V +L I +VL+ Sbjct: 14 IGNEIRAARARRGITQNELADQSGISHTTIVRLESGKRTVDVVQLFAICKVLDVDPGVLL 73 Query: 75 DVSPTVCSDISS 86 D + + S Sbjct: 74 DAAQSAQGAEES 85 >gi|258651242|ref|YP_003200398.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554467|gb|ACV77409.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 504 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 5/141 (3%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N P+P+ +G+R+R R G++ + E GI+ + +E G S L + Sbjct: 26 QNAGAPDPL--TIGRRLRHLRKAAGLTLSDVAEAAGISPSALSLFENGKREAKLSLLTTL 83 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKII 120 + VL + + V+P E S L++ + ++ + + ++ Sbjct: 84 AGVLGTDLGELLAVAPPSRRAALEIELERAQRSSGFKSLEIAAVKPGPRLQTEAL-ESLV 142 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 L R++ + + + E+ Sbjct: 143 GLHRALARIQAERQATPEQAR 163 >gi|288573116|ref|ZP_06391473.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568857|gb|EFC90414.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 234 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 28/80 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R G++Q +L G+ V + E + + ++ VL + + Sbjct: 4 GERLRRVRKDQGLTQTELARLSGVKQNTVSQVENDRIGLSIETWESLASVLGCSVGYLVS 63 Query: 76 VSPTVCSDISSEENNVMDFI 95 S + F Sbjct: 64 GEGDRKSSGHRGSAGKLSFF 83 >gi|227357001|ref|ZP_03841373.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227162879|gb|EEI47838.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 85 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VGKRI+ RR L +S K+ LG+T Q K E G ++ L I+ +L+ Sbjct: 3 INTVVGKRIQNRRKELNISSSKIALQLGMTEQYYLKLENGYTKITVDELICIAIILKVSP 62 >gi|166032705|ref|ZP_02235534.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] gi|166027062|gb|EDR45819.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVS 77 I R GMSQ++L + + +T Q V ++E G L+ +S+ + I+ + Sbjct: 9 ILKLRTERGMSQDELADKIMVTRQAVSRWENGATVPNTDTLKLLSKEFDVSINTLLGEPR 68 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +C ++ DG LN + + Sbjct: 69 KLICQCCGMPIDDDSILGRDKDG-TLNEEYCK 99 >gi|149275690|ref|ZP_01881835.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39] gi|149233118|gb|EDM38492.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39] Length = 71 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +RIR+ R GMSQ L + LG++ + K E G + S L ++++LE + Sbjct: 8 QRIRILRKKSGMSQLALAKKLGMSQNALSKIELGEIELSLSHLYQLADLLEIDL 61 >gi|308067835|ref|YP_003869440.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857114|gb|ADM68902.1| Putative HTH-type transcriptional regulator [Paenibacillus polymyxa E681] Length = 115 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 9/107 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 VG RIR R G+SQE L E G + E+ + L+ I++ L + Sbjct: 8 VGTRIRDIRKSKGLSQEALAEKAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQLL 67 Query: 74 -FDVSPTVCSDISSEENNVMDFISTPDGLQ-------LNRYFIQIDD 112 + ++ S ++ + T + L F++ID+ Sbjct: 68 TYVKDNDELTEEHSSIKTILTLLRTRESKDTELALKILTDIFMRIDE 114 >gi|229088202|ref|ZP_04220142.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] gi|228695098|gb|EEL48134.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] Length = 181 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 31/70 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++ +++ + ++ + + E+ + + L+ ISE L S+FF Sbjct: 5 IGVKIKRLRKERKLTLKQIADQTNLSISFLSQVERSKSSITLESLKKISEALGVNPSYFF 64 Query: 75 DVSPTVCSDI 84 + Sbjct: 65 SEPEKQTTPT 74 >gi|150021356|ref|YP_001306710.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793877|gb|ABR31325.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 72 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R ++Q++L + +G+T + + YE G + +++ L + F+ Sbjct: 3 LRELREKKMLTQQQLAKLIGVTQRTISAYEIGQAKPSLDVAIRLAKALGVSVEDVFEAWV 62 Query: 79 TVCSDISSEE 88 S S E Sbjct: 63 EGKSSQSPSE 72 >gi|116696126|ref|YP_841702.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530625|emb|CAJ96972.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 204 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 ++P+ ++ +VG IR R+ ++ ++ E G++ + K E G G L I+ Sbjct: 12 QVPH-IEESVGMVIRELRLRERLTIAQVAEQAGLSRGMLSKIETGSTMAGMDTLARIARA 70 Query: 66 LESPISFFF---DVSPTVCSDISSEEN 89 L P++ F D + + Sbjct: 71 LGVPMAVLFSKYDGASAAAQHVRHGAG 97 >gi|83648919|ref|YP_437354.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636962|gb|ABC32929.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 106 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R G++ E+L E G + + E KGV R A +L I++ L+ F Sbjct: 5 LGAKIKELRKKKGLTLEQLAEKTGSGKSYIWEIENKGVKRPSAEKLTLIAKALDVTTEFL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 D S ++ +E F GL Sbjct: 65 VDNSQAEITEDQEKEV----FFRKLGGLD 89 >gi|327398256|ref|YP_004339125.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM 10411] gi|327180885|gb|AEA33066.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM 10411] Length = 180 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ ++I+ R G++ + L E +G T + + E G S LQ I++ L+ + Sbjct: 1 MNMAEKIKSYRKKQGLTLKALAEKVGCTDAYISQIETGKAVPSISVLQKIAQSLDVQVRD 60 Query: 73 FFDVSPTVCSDISSEEN 89 + ++E Sbjct: 61 LLSDEQSNDKIFLTKEE 77 >gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 182 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++IR+ R G++ ++L E G++ + + E+G + S L+ I++ L PI+ FF Sbjct: 8 RQIRVSRTNAGLTLKELSEKTGLSVSFISQVERGTSSPAISSLKKIADGLNVPITSFF 65 >gi|284098554|ref|ZP_06385940.1| molybdenum-binding protein [Candidatus Poribacteria sp. WGA-A3] gi|283830492|gb|EFC34683.1| molybdenum-binding protein [Candidatus Poribacteria sp. WGA-A3] Length = 399 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P P V R+R R+ G+SQ ++ E GIT Q + EK G H+++ Sbjct: 2 STPKPQQRVV-NRLREMRIAAGLSQGEVAESAGITRQALYAMEKDQYLPGTEVALHLADA 60 Query: 66 LESPISFFF---DVSPTVCSDISSEENNVMDFISTP 98 L + + F + + +++ + V++ Sbjct: 61 LGTSVEDLFSLNEGRDVLEAELPAGHPGVLNSTRVK 96 >gi|260587029|ref|ZP_05852942.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|331086463|ref|ZP_08335542.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] gi|260542519|gb|EEX23088.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|330410521|gb|EGG89949.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG++IR R+ G +Q++L G++ ++ YE G + +L+ I+ L+ Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISP 58 >gi|240103181|ref|YP_002959490.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] gi|239910735|gb|ACS33626.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] Length = 65 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ I F Sbjct: 3 NRLRELREAKGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGLKIEDVF 60 >gi|241661721|ref|YP_002980081.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240863748|gb|ACS61409.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 194 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ + +R+R R G+S + L E ++ + E+G + A+ L +S L Sbjct: 1 MDIHQRIAQRLRELRDAQGLSLDALAERSQVSRSAISLIERGQSSPTAAVLDRLSSALGV 60 Query: 69 PISFFFDVSPTVCSDISS 86 ++ F+ S ++ S Sbjct: 61 TLASLFEDSAAPAAEPSP 78 >gi|312891075|ref|ZP_07750598.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296383|gb|EFQ73529.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 116 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 41/81 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+L R G SQ LGI+ K E G+ + SRL +I+++L+ I Sbjct: 4 LGKNIKLLRHEKGWSQSDFAAKLGISVPAFSKIENGLTDLHLSRLNNIAKILDMSIVELL 63 Query: 75 DVSPTVCSDISSEENNVMDFI 95 +V ++ ++E ++ + I Sbjct: 64 SFQKSVRNNDANELDSAKESI 84 >gi|285018770|ref|YP_003376481.1| transcriptional regulator transcription regulator protein [Xanthomonas albilineans GPE PC73] gi|283473988|emb|CBA16489.1| putative transcriptional regulator transcription regulator protein [Xanthomonas albilineans] Length = 115 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 2/109 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++QE+LG LG+T + +E L + VL+ + Sbjct: 5 GDRLREARKAAGLTQEQLGFSLGVTKSSISAWENDRETPSFRLLPMLRVVLKRSLDDLVC 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + + L R + + R+ ++EL++ Sbjct: 65 GHVPSARLQEASPDYALQARDPHEQALLTR--YRNMPARRREAVLELLK 111 >gi|268610362|ref|ZP_06144089.1| SOS-response transcriptional repressor [Ruminococcus flavefaciens FD-1] Length = 217 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G+R+ R GM+Q++L +G + + K E G S + I++ L++ + Sbjct: 1 MTFGERVLALRTEKGMTQDELALAVGYKSRSTIAKIESGERDPHQSMIAAIAKALDTTPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + S ++ N+ T +G L Sbjct: 61 YLMGWEESEQS--PDKDKNLSKIPYTEEGTVLV 91 >gi|307824117|ref|ZP_07654344.1| plasmid maintenance system antidote protein, XRE family [Methylobacter tundripaludum SV96] gi|307734901|gb|EFO05751.1| plasmid maintenance system antidote protein, XRE family [Methylobacter tundripaludum SV96] Length = 84 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +++ VG+ +R+ R + +SQ +L E GI + E +G R + Sbjct: 1 MNEYQIAKKSINVTVGESVRIIRELQELSQNQLAELTGIPQSTISAIEHDKINLGIERAK 60 Query: 61 HISEVLESPIS 71 +++ L+ + Sbjct: 61 ILAKALKCHPA 71 >gi|160893483|ref|ZP_02074268.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50] gi|156864878|gb|EDO58309.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50] Length = 122 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++Q +L E L I+ + E+G + + ++ + ++ + + Sbjct: 15 IGQRIVQIRHANNLTQYQLAEMLDISVKHCSAIERGKSSLSLEKMIDLCDIFNIDLDYLI 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG------LQLNRYFIQIDDVK 114 S + V++ +++ D F I + + Sbjct: 75 RGVQKTDDIPSYIPHTVVEIMTSDDEEKKQHFRDYIEIFNAISNSQ 120 >gi|22536402|ref|NP_687253.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22533229|gb|AAM99125.1|AE014201_23 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 158 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 13/99 (13%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L + + Q KYE G + + +++ I + + Sbjct: 3 NRLKELRKDKGLTQADLAKVINTNQSQYGKYENGKTSLSIENSKILADFFGVSIPYLLGL 62 Query: 77 SPTVCSDISS-------------EENNVMDFISTPDGLQ 102 S+ +++ D+ ST + L+ Sbjct: 63 DNNSKIANSTIKDTNLLSFFEQVKKDMGQDYFSTLETLE 101 >gi|73697811|gb|AAZ81511.1| PlcR [Bacillus weihenstephanensis] Length = 287 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRAMRGLTQKQLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|298243569|ref|ZP_06967376.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556623|gb|EFH90487.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 460 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R L M+Q +L + + E+G R L ++ L+ P++F Sbjct: 17 VGTNIREVRTKLNMTQAQLA-APEFSISYISAIERGKIRPSLKALSILARRLDVPLTFLL 75 Query: 75 DVSPTVCSDISS 86 + SP ++ + Sbjct: 76 EGSPAGAAEARA 87 >gi|284031267|ref|YP_003381198.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283810560|gb|ADB32399.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 397 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPIS 71 ++VG+RI R GMSQ+ L +G++ + + E+G+ V S L ++ VL ++ Sbjct: 1 MHVGERIGAYRKRRGMSQDALAGLIGMSRSWLSQVERGIRGVDRLSTLNDLATVLRIDVA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + D +SE+ +D + T Sbjct: 61 DLIGRDWILAPD-ASEQVTAVDAVRT 85 >gi|258543250|ref|YP_003188683.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|329114057|ref|ZP_08242821.1| Hypothetical protein APO_0832 [Acetobacter pomorum DM001] gi|256634328|dbj|BAI00304.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256637386|dbj|BAI03355.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256640438|dbj|BAI06400.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256643495|dbj|BAI09450.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646550|dbj|BAI12498.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649603|dbj|BAI15544.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652591|dbj|BAI18525.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655647|dbj|BAI21574.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] gi|326696596|gb|EGE48273.1| Hypothetical protein APO_0832 [Acetobacter pomorum DM001] Length = 122 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 49/115 (42%), Gaps = 13/115 (11%) Query: 1 MVGNKKIPNP-VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M + +P +D +G+RI++ R G++Q+++ + LG++ + +E G + Sbjct: 1 MADQDDVISPGID--LGQRIKILRKSAGLTQQQVADALGVSRPAIAFWETGREGSARKHI 58 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + F ++ ++ + TPD + R + +D + Sbjct: 59 PKLAALFNVDPEIF----------LTGYVQEDIELVITPDEHDVIRLYRMLDPSR 103 >gi|238025551|ref|YP_002909783.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237880216|gb|ACR32548.1| Transcriptional regulator, XRE family protein [Burkholderia glumae BGR1] Length = 191 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R L ++ +++ GI+ + + E+G + L I+ L + +F Sbjct: 15 IGARMRALRQRLKLTLDEVAAAAGISKPFLSQVERGRATPSLASLAGIARALGVTMQYFV 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + ++ F + F ++ + +++ ++ + + E Sbjct: 75 EAPSEAKAVRRADTLQFFSFADS------ANSFARMTNPGSSRQLDAVLVRLPARE 124 >gi|225018996|ref|ZP_03708188.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] gi|224948221|gb|EEG29430.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] Length = 174 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE++ E LG++ Q + K+E + + ++ + + Sbjct: 21 MNLGNSLFHARKKCGLSQEEVAEKLGVSRQTISKWETDETIPDIRQSKKMASIYNVSLDE 80 Query: 73 F--FDVSPTVCSDISSEENNVMD 93 FD+ D + + + Sbjct: 81 LIDFDLDIKEIQDTIDKTSEETE 103 >gi|153954625|ref|YP_001395390.1| hypothetical protein CKL_2007 [Clostridium kluyveri DSM 555] gi|219855103|ref|YP_002472225.1| hypothetical protein CKR_1760 [Clostridium kluyveri NBRC 12016] gi|146347483|gb|EDK34019.1| Hypothetical protein CKL_2007 [Clostridium kluyveri DSM 555] gi|219568827|dbj|BAH06811.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 106 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R + ++ KL LGI+ Q+ + E VN + I + +S FF Sbjct: 4 LGARIRELRKLNNVTAVKLSAKLGISQGQLSRIENNVNTAQFDTIMRICDFFSITLSEFF 63 Query: 75 DVSPTVCSDISSEENNVMD 93 + + ++SE +++ Sbjct: 64 NDDNSEHIVLTSELKELLN 82 >gi|119509672|ref|ZP_01628818.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] gi|119465691|gb|EAW46582.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] Length = 379 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ LGMSQ+ L +T Q + E G + +++ L + F + Sbjct: 9 NKLKQTRIRLGMSQQDLANLANVTRQTISGVESGQYAPSTTIALRLAKALGCQVEDLFWL 68 Query: 77 SPTVCSDISSEENNV 91 + ++ NV Sbjct: 69 EQDLPEIAATPAYNV 83 >gi|88706762|ref|ZP_01104463.1| DNA-binding protein [Congregibacter litoralis KT71] gi|88698943|gb|EAQ96061.1| DNA-binding protein [Congregibacter litoralis KT71] Length = 186 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G+R+ R + M+ E+L G++ + + E+G + Q I++ Sbjct: 1 MTDSTSRLLGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERGKANPTLAVTQRIAQTF 60 Query: 67 ESPISFFFDVSPTVCS-DISSEENNVMDFISTPD 99 I D S D+ ++ F + + Sbjct: 61 GISIGELVDDPNASASIDVVRGDDPGTVFRADSE 94 >gi|320528169|ref|ZP_08029334.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131517|gb|EFW24082.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 137 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++R R+ M+Q+++ + L ++ Q + YE GV R + ++ + + + V+ Sbjct: 15 QMRKLRINHHMTQKQMADILNVSAQSISAYENGVIRPDIEIIMKYADYFKVDMDYLTGVN 74 Query: 78 -PTVCSDISSEENNVMDFIS 96 +D+ + F++ Sbjct: 75 LYGPINDVFPTQTEAQMFMA 94 >gi|220911489|ref|YP_002486798.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858367|gb|ACL38709.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 504 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+R+R R G++ + L +G Q+ E G + LQH++ L I Sbjct: 34 IALGRRVRHLRKQAGLTLDGLSAAVGTAPSQLSLIENGKREPKLTLLQHLAAALNVSIDQ 93 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 P E + L L Sbjct: 94 LLGAEPPSRRAALEIELERYQRGPLYESLNL 124 >gi|251798962|ref|YP_003013693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546588|gb|ACT03607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 122 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI R +QE+ LGI+ + YEK L +++ + I + Sbjct: 1 MNIGNRIAGLREERKWTQEQTASKLGISRAALSHYEKNRREPDTETLAKFADLYQVTIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + +S + N +D Sbjct: 61 LVGRTTNTQAALSEDVRNFVD 81 >gi|76817605|ref|YP_336411.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|76582078|gb|ABA51552.1| DNA-binding protein [Burkholderia pseudomallei 1710b] Length = 236 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 58 VALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 117 Query: 73 FFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 F + S ++ F + P+G QL +++ + R ++ Sbjct: 118 FVETPSEERSVCRGDQLRFFSFADSANLFARLTNVPEGRQLEAILVRMPPGQKRSEV 174 >gi|16801483|ref|NP_471751.1| hypothetical protein lin2421 [Listeria innocua Clip11262] gi|16414943|emb|CAC97648.1| lin2421 [Listeria innocua Clip11262] Length = 83 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 19 IRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR +R LG SQ+ + LG KYE G ++ A L ++++L+ IS FF Sbjct: 10 IREKRESLGFSQKDMAIKLGFKNASTYLKYETGEYKIKAEMLPLLAKILKCNISNFF 66 >gi|116688212|ref|YP_833835.1| hypothetical protein Bcen2424_0188 [Burkholderia cenocepacia HI2424] gi|116646301|gb|ABK06942.1| protein of unknown function DUF955 [Burkholderia cenocepacia HI2424] Length = 383 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +R+ R+ SQ++LGE +G + Q + + E G + A+ + + + L F Sbjct: 2 IFIGSNLRIARLFHNFSQQELGEHIGCSKQFLSRLESGGDVPTAALVSKLCDQLAVLPEF 61 Query: 73 FFDVSPTVCSD 83 F + P +D Sbjct: 62 FVEPDPMPIAD 72 >gi|326391550|ref|ZP_08213082.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992431|gb|EGD50891.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 427 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 7/96 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ +SQ +L ++ + + E G +L +++E LE P+S+FF Sbjct: 5 IGDKIKALRLQKNLSQSELCGNF-MSRVVLSRIENGKALPSLEQLAYLAEKLEVPVSYFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S + + ++++ L L + + +I Sbjct: 64 SDSTGEKYILFEKNSSLLK------DLFLAKDYYEI 93 >gi|298246895|ref|ZP_06970700.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297549554|gb|EFH83420.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 869 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R+R R+ +SQE L E LG++ + + ++E+ AS +S Sbjct: 1 MQFGTRLRQERIQRHLSQEALAEALGVSPRSIARWEQDQALPQASVRLQLSRFFNLHPKE 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|294648966|ref|ZP_06726414.1| hypothetical protein HMP0015_0623 [Acinetobacter haemolyticus ATCC 19194] gi|292825101|gb|EFF83856.1| hypothetical protein HMP0015_0623 [Acinetobacter haemolyticus ATCC 19194] Length = 368 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 19 IRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---- 73 +R+ R + GMSQ +L + +G IT + K EKG + +I++ L P FF Sbjct: 21 LRIARDLRGMSQTELVQKMGNITQAALSKIEKGDIKPSDETKFNIAKTLNFPERFFHQND 80 Query: 74 -FDVSPTVCSDISSEENNVMDFIS 96 F VSP + + +S Sbjct: 81 HFKVSPISLHAYRKKASTTAKILS 104 >gi|257887020|ref|ZP_05666673.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733] gi|257898175|ref|ZP_05677828.1| prophage Lp1 protein 8 [Enterococcus faecium Com15] gi|257823074|gb|EEV50006.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733] gi|257836087|gb|EEV61161.1| prophage Lp1 protein 8 [Enterococcus faecium Com15] Length = 127 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++I+ R+ M+Q+++ + LGIT YE G S LQ ++ + + + Sbjct: 8 EKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDYL 64 >gi|196033516|ref|ZP_03100928.1| helix-turn-helix Cro and cI family protein [Bacillus cereus W] gi|195993950|gb|EDX57906.1| helix-turn-helix Cro and cI family protein [Bacillus cereus W] Length = 115 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R ++Q LG+ +G+T V K+E G ++ ++ L P+ + S Sbjct: 6 RLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVPVDYLLGRS 65 Query: 78 PTVCSDISSEENNVM 92 + D + + Sbjct: 66 DSRELDADMNQKYLH 80 >gi|167840807|ref|ZP_02467491.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 179 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 1 MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 F + S E+ F + P+G QL +++ + R ++ Sbjct: 61 FVETPSEERSVCRGEQLRFFSFADSANLFARLTNVPEGRQLEAILVRMPPGQKRSEV 117 >gi|37650520|emb|CAE47449.1| PlcR protein [Bacillus thuringiensis] Length = 169 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|37650518|emb|CAE47448.1| PlcR protein [Bacillus thuringiensis] Length = 283 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|331269964|ref|YP_004396456.1| helix-turn-helix domain-containing protein [Clostridium botulinum BKT015925] gi|329126514|gb|AEB76459.1| helix-turn-helix domain protein [Clostridium botulinum BKT015925] Length = 184 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R MS + + + G++ + + E+G + S L I+ L+ S F Sbjct: 8 IGSNLKTIRNQKNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVSFSSFI 67 Query: 75 DVSPTVCSDISSE 87 D S IS + Sbjct: 68 DDSNENLKIISQD 80 >gi|291551242|emb|CBL27504.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 255 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R GMSQ++L E + ++ Q V ++E G L+ +S+VL+ I+ Sbjct: 7 ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVLDVSIN 59 >gi|262043414|ref|ZP_06016539.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039240|gb|EEW40386.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 207 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R + RR+ LGM+Q ++ G++ Q ++ E G R + +++ L+ + Sbjct: 1 MSLAARFKARRIELGMTQTEVANVAGVSQQSIESIESGRTR-KPRNVLELAKALKCSPDW 59 Query: 73 FFDV 76 + Sbjct: 60 LLNG 63 >gi|253681993|ref|ZP_04862790.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum D str. 1873] gi|253561705|gb|EES91157.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum D str. 1873] Length = 432 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR LGM+ + L IT Q+ E G + L++++ L I + Sbjct: 6 LGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANSLNISIEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + T I N+ + + L L +I Sbjct: 65 ESEETQAEKICIYYENMSESHILNNQLNLAEQYI 98 >gi|218290717|ref|ZP_03494799.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239255|gb|EED06454.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 77 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R GM+ E L +GI+ + E G V L IS+VL+ + + Sbjct: 7 VKIGSRIRSARQSKGMTVESLANAIGISKGSLSAIETGKRPVSLLNLTRISDVLDISLDY 66 Query: 73 FFDVSPTVC 81 +S Sbjct: 67 LVGLSDNPE 75 >gi|260903897|ref|ZP_05912219.1| helix-turn-helix domain-containing protein [Brevibacterium linens BL2] Length = 182 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G RIR RR ++ +L GI+ + K E+G S +S L + Sbjct: 13 GARIRARRKYNDLTLNELAVRAGISRAALSKIERGEQDTSVSNAMGLSRALGVDVG 68 >gi|91780476|ref|YP_555683.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693136|gb|ABE36333.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 109 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLE 67 D +R++ R+ G++QE+LG GI +V +YEKG + Q ++ L Sbjct: 9 DAVFPRRLKQARLRSGLTQEQLGIHAGIDEFSASARVNQYEKGKHTPAIQTSQRLARALL 68 Query: 68 SPISFFFDVSPTVCS 82 P F ++ + + Sbjct: 69 VPTGFLYEDDDLLAN 83 >gi|323483673|ref|ZP_08089056.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum WAL-14163] gi|323692636|ref|ZP_08106868.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum WAL-14673] gi|323403009|gb|EGA95324.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum WAL-14163] gi|323503333|gb|EGB19163.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum WAL-14673] Length = 238 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +R R + G++ ++L + + + + KYE+G + ++ IS VL I Sbjct: 6 MELGSILRKVRKLRGLTIQQLADKIQKSKSTLSKYERGEISIDILTIKEISRVLNISID- 64 Query: 73 FFDVSPTVCSDISSE 87 ++ P + S Sbjct: 65 --ELLPGTADNSSQH 77 >gi|300854557|ref|YP_003779541.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434672|gb|ADK14439.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 365 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R G++Q++LG +G++ V K+E G + + L ++ I Sbjct: 4 LQIGEIIFKLRKEKGITQDQLGGFIGVSTAAVSKWESGNSYPDITLLPVLASYFNVSI-- 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + I E VM+ + L Sbjct: 62 ----DKLLNYKIELSEKEVMEIFKKCEVL 86 >gi|291560963|emb|CBL39763.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 143 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VG+RI+L R GMSQ + ++ Q + KYE + + + +++ ++++ + Sbjct: 1 MTVGERIQLLRKKTGMSQIDFATKINVSKQTLYKYENNLITNIPSDKIEAVADLCHVSPA 60 Query: 72 FFF 74 + Sbjct: 61 YLM 63 >gi|254470871|ref|ZP_05084274.1| helix-turn-helix domain protein [Pseudovibrio sp. JE062] gi|211960013|gb|EEA95210.1| helix-turn-helix domain protein [Pseudovibrio sp. JE062] Length = 160 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 13/96 (13%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF----- 73 +R R+ G+SQE+L GI+ + +Q+ E+G N L+ I+ L++ Sbjct: 3 VRKLRIEKGLSQEQLAHMAGISTRTLQRIERGAN-ASPETLKCIASALDTDFGDLRKDQD 61 Query: 74 -FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + +S +E M+++ R F Sbjct: 62 MPSGTHGILPQLSQKEQEAMEYVRD------IRSFY 91 >gi|153815095|ref|ZP_01967763.1| hypothetical protein RUMTOR_01319 [Ruminococcus torques ATCC 27756] gi|145847663|gb|EDK24581.1| hypothetical protein RUMTOR_01319 [Ruminococcus torques ATCC 27756] Length = 429 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+ I +R GM+Q+++ E LG+T + V K+E L + + L + Sbjct: 48 GEFIARKRKERGMTQKEMAELLGVTNKAVSKWETSQGMPDIGILPELGKALGVTVDEILM 107 Query: 75 ----DVSPTVCSDISSEENNVMDFI 95 + + +S E+ +++ + Sbjct: 108 GEQIEQEKRAETAVSDEDKKLLEIV 132 >gi|170729064|ref|YP_001763090.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814411|gb|ACA88995.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 77 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L E L ++ Q V EKG ++ + ++PI FD Sbjct: 3 NRLKVLRAEQDWTQADLAEKLDVSRQTVNAIEKGKYDPSLPLAFKLARLFDTPIEAIFDD 62 Query: 77 SPTVCSDIS 85 + SD S Sbjct: 63 EVRIDSDKS 71 >gi|15668446|ref|NP_247244.1| repressor protein YorfE [Methanocaldococcus jannaschii DSM 2661] gi|1590997|gb|AAB98257.1| repressor protein, putative (yorfE) [Methanocaldococcus jannaschii DSM 2661] Length = 79 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R + ++QE L + LG++ Q + EKG I++ I F Sbjct: 16 NKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 73 >gi|296118462|ref|ZP_06837041.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295968603|gb|EFG81849.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 469 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S + D + + Sbjct: 65 ------SRDDDSRLLAEIQDVVQDKE 84 >gi|293374084|ref|ZP_06620420.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325845732|ref|ZP_08169012.1| cupin domain protein [Turicibacter sp. HGF1] gi|292647291|gb|EFF65265.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325488246|gb|EGC90675.1| cupin domain protein [Turicibacter sp. HGF1] Length = 180 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR RM L ++QE+L + +T + + E+ + + L I E L + + Sbjct: 1 MIIGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLASPSIATLVDILEALGTTLGE 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|293377825|ref|ZP_06624010.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] gi|292643535|gb|EFF61660.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] Length = 123 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++I+ R+ M+Q+++ + LGIT YE G S LQ ++ + + + Sbjct: 4 EKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDYL 60 >gi|282866826|ref|ZP_06275862.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558318|gb|EFB63884.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 509 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK IR R G +Q +L E L + V + E+G + + I E L+S I Sbjct: 7 VRIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|229000727|ref|ZP_04160239.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17] gi|228759027|gb|EEM08061.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17] Length = 145 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G +++ R SQE + +G+T Q V K+E + L +SE+ E I Sbjct: 3 NMNLGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTID 62 Query: 72 FFFDVSPTVCSDI 84 S V ++ Sbjct: 63 ELIKGSEDVRGEL 75 >gi|229147890|ref|ZP_04276231.1| hypothetical protein bcere0012_50130 [Bacillus cereus BDRD-ST24] gi|228635540|gb|EEK92029.1| hypothetical protein bcere0012_50130 [Bacillus cereus BDRD-ST24] Length = 285 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|227508229|ref|ZP_03938278.1| DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192458|gb|EEI72525.1| DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 174 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ G SQ+++ + L +T Q + +E G +R L +S+V + P+ F Sbjct: 9 SQLKKARIRKGYSQQQVADKLRVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVKD 68 Query: 77 SPTVCSDISSEENNVMDFI 95 + + I S+ + F Sbjct: 69 NHSFDLQIESDREEFLHFF 87 >gi|167763862|ref|ZP_02435989.1| hypothetical protein BACSTE_02243 [Bacteroides stercoris ATCC 43183] gi|167697978|gb|EDS14557.1| hypothetical protein BACSTE_02243 [Bacteroides stercoris ATCC 43183] Length = 191 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D Sbjct: 67 DDQDENGP 74 >gi|160915810|ref|ZP_02078018.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991] gi|158432286|gb|EDP10575.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991] Length = 171 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + IR R G+SQE+L L + Q V K+EK ++ +S L ++E L++ +S Sbjct: 4 ENIRNLRKAKGLSQEELAIKLNVVRQTVSKWEKSLSVPDSSMLVSLAEELDTSVS 58 >gi|49183978|ref|YP_027230.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227816122|ref|YP_002816131.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] gi|254682796|ref|ZP_05146657.1| hypothetical protein BantC_02950 [Bacillus anthracis str. CNEVA-9066] gi|254740143|ref|ZP_05197835.1| hypothetical protein BantKB_03819 [Bacillus anthracis str. Kruger B] gi|49177905|gb|AAT53281.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227003523|gb|ACP13266.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] Length = 92 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|209521228|ref|ZP_03269950.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209498341|gb|EDZ98474.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 195 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +RIR R S + L E ++ + E+G + A+ L ++ L P Sbjct: 2 DINTLIARRIRELRDAQAWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFIST 97 ++ F+ ++ S + T Sbjct: 62 LASLFEQDGAPAAEPSPVSRAAEQAVWT 89 >gi|166153466|ref|YP_001653980.1| transcriptional regulator [Bacillus thuringiensis] gi|165875305|gb|ABY68462.1| putative transcriptional regulator [Bacillus thuringiensis] Length = 186 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R MSQEKL E + ++ Q + +E N L +S + + Sbjct: 1 MNIGRQIQYFRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|170722605|ref|YP_001750293.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760608|gb|ACA73924.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 187 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + V +V +R R +GMSQ L E G++ + + E G V + L Sbjct: 1 MHKDSAHRASVLQHVSFNVRALRNAVGMSQSALAERSGVSRRMLVAIEAGEKNVSLTTLD 60 Query: 61 HISEVLES 68 I+E L Sbjct: 61 LIAEALGV 68 >gi|218131512|ref|ZP_03460316.1| hypothetical protein BACEGG_03131 [Bacteroides eggerthii DSM 20697] gi|317476468|ref|ZP_07935717.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|329956590|ref|ZP_08297163.1| DNA-binding helix-turn-helix protein [Bacteroides clarus YIT 12056] gi|217986444|gb|EEC52781.1| hypothetical protein BACEGG_03131 [Bacteroides eggerthii DSM 20697] gi|316907494|gb|EFV29199.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|328523962|gb|EGF51038.1| DNA-binding helix-turn-helix protein [Bacteroides clarus YIT 12056] Length = 191 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D Sbjct: 67 DDQDENGP 74 >gi|170759644|ref|YP_001785784.1| hypothetical protein CLK_3646 [Clostridium botulinum A3 str. Loch Maree] gi|169406633|gb|ACA55044.1| conserved domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 65 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K+I++ R+ MSQE+L + +G+ Q + E G + I +VL ++ F Sbjct: 4 KKIKIARIECDMSQEQLADAVGVARQTIGLIEAGKYNPSLNLCISICKVLNKTLNDLF 61 >gi|154500601|ref|ZP_02038639.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC 29799] gi|150270490|gb|EDM97799.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC 29799] Length = 75 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I R G+SQ +L E + ++ + + E V + I + LE P Sbjct: 10 KYLGLNIAYYRKERGLSQSRLAERINVSRTHMSRIETADCAVSLDVVFAICDALEVPPEK 69 Query: 73 FF 74 F Sbjct: 70 LF 71 >gi|139439103|ref|ZP_01772555.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC 25986] gi|133775450|gb|EBA39270.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC 25986] Length = 127 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 9/121 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R G SQ L + L + + V +E+G +L +++L + + Sbjct: 4 KLKQARKENGYSQADLADALNVDIKTVGNWERGKTLPDIEQLWKCAKILHTDPNDLLGWY 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 D + + +G +L + Q K R KI+E R + Sbjct: 64 EEHPEDRPTVP-------AGAEG-ELIACYRQ-STEKRRSKILETARDQAELSQAQAAAP 114 Query: 138 E 138 E Sbjct: 115 E 115 >gi|39997635|ref|NP_953586.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984527|gb|AAR35913.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298506575|gb|ADI85298.1| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing [Geobacter sulfurreducens KN400] Length = 181 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RMI ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQE 60 Query: 73 FFDVSPTV 80 FF Sbjct: 61 FFSDPIGE 68 >gi|29375456|ref|NP_814610.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|256854283|ref|ZP_05559647.1| transcriptional regulator [Enterococcus faecalis T8] gi|257421117|ref|ZP_05598107.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|294781282|ref|ZP_06746628.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300859696|ref|ZP_07105784.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|29342916|gb|AAO80680.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256709843|gb|EEU24887.1| transcriptional regulator [Enterococcus faecalis T8] gi|257162941|gb|EEU92901.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|294451618|gb|EFG20074.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|295113927|emb|CBL32564.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300850514|gb|EFK78263.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|323480052|gb|ADX79491.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 82 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I + R + M+Q+ L +G++ Q + + E+ I+ V I F Sbjct: 13 IHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVFGVTIDDVFTFKE 72 Query: 79 TVCSDISSEE 88 T+ D+ E Sbjct: 73 TLNDDVEQEA 82 >gi|330718467|ref|ZP_08313067.1| XRE family DNA-binding protein [Leuconostoc fallax KCTC 3537] Length = 249 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI+ +R+ +QE+L L ++ V +E G N + IS++ E + Sbjct: 1 MNIGDRIKEQRLYKSWTQEQLAHFLNVSRSTVSSWEVGRNYPDLETIVAISDLFEISLDK 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + S + Sbjct: 61 LLREDSIMVRETSKKAK 77 >gi|313677248|ref|YP_004055244.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312943946|gb|ADR23136.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 118 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G ++ R LG+SQ +L + L I +++ YE G + ++ +++ Sbjct: 4 NKLIGLNLKRYRESLGLSQVQLADYLSINREEISYYENGKRTMPVKLIEKAAKLFGIDEF 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 ++ P +D D + + L+ F +I Sbjct: 64 DLYESDPE-HNDAKVALAFRADSLG-KEDLEQIADFRKI 100 >gi|307129603|ref|YP_003881619.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527132|gb|ADM97062.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 76 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + V +G+R++ R+ G+SQE E G+ + E+GV L ++ Sbjct: 2 KTSDSVKTLLGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATG 61 Query: 66 LESPISFFF 74 L + ++ F Sbjct: 62 LHTDLTTLF 70 >gi|266620773|ref|ZP_06113708.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867593|gb|EFC99891.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 113 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 4/102 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 V KRIR RR LGMS ++ +G E+G + L ++ L+ + + Sbjct: 8 VAKRIRQRRKELGMSSAEVAGKIGRAVHYYGDIERGTCGMSIETLLDLAHYLDLSVDYIL 67 Query: 74 FDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDD 112 F + D ++ D + + +++ ++++ + + Sbjct: 68 FGQAGEERIDNPDLAYRILKKYDEKTQKEAIEMMKFYLCLRE 109 >gi|229100652|ref|ZP_04231502.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29] gi|228682832|gb|EEL36860.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29] Length = 142 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G +++ R SQE + +G+T Q V K+E + L +S++ E I Sbjct: 3 NMNLGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTID 62 Query: 72 FFFDVSPTVCSDI 84 S D+ Sbjct: 63 ELIKGSGDAREDL 75 >gi|118586301|ref|ZP_01543755.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118433264|gb|EAV39976.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 122 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +SQ+ L L I+ Q + K+E G + L +SE+L+ + Sbjct: 6 EQLKKYRNKKNLSQKDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLDTLVLG 65 Query: 77 SPTVCSDISSEE 88 S S I +++ Sbjct: 66 SEEQNSRIDNKQ 77 >gi|85701408|ref|YP_459993.1| helix-turn-helix Cro and cI family protein [Bacillus phage WBeta] gi|89152506|ref|YP_512337.1| transcription regulator [Bacillus phage Fah] gi|76445729|gb|ABA42719.1| transcription regulator [Bacillus phage Fah] gi|76564034|gb|ABA46423.1| transcriptional regulator, putative [Bacillus phage Cherry] gi|81097471|gb|ABB55414.1| putative transcriptional regulator [Bacillus phage Gamma] gi|83658644|gb|ABC40428.1| helix-turn-helix Cro and cI family protein [Bacillus phage WBeta] Length = 118 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R ++Q LG+ +G+T V K+E G ++ ++ L P+ + S Sbjct: 9 RLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVPVDYLLGRS 68 Query: 78 PTVCSDISSEENNVM 92 + D + + Sbjct: 69 DSRELDADMNQKYLH 83 >gi|329962332|ref|ZP_08300337.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328530193|gb|EGF57074.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 191 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D + Sbjct: 67 DDQDEMGP 74 >gi|255282774|ref|ZP_05347329.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255266795|gb|EET60000.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 147 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R+ ++QE++ E L +T Q V ++E G L+ IS + I+ Sbjct: 7 LKKIRIENSLTQEEMAERLAVTRQAVSRWENGDATPNIETLKQISTAFDVSIN 59 >gi|225405572|ref|ZP_03760761.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme DSM 15981] gi|225042882|gb|EEG53128.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme DSM 15981] Length = 81 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ V++ G +R R +QE+ + GI+ + E+G + V R + I++ L Sbjct: 10 PDNVNVRFGNELRKMREARRYTQEEFAQLCGISRAYYGRLERGEHSVTLERCKQIADALN 69 Query: 68 SPISFFFDVSPT 79 +S F P Sbjct: 70 LTLSDLFINLPD 81 >gi|169825863|ref|YP_001696021.1| MerR family transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168990351|gb|ACA37891.1| transcriptional regulator, MerR family [Lysinibacillus sphaericus C3-41] Length = 132 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGE---CLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+++R+ R+ G+SQE++ E LG + +V E G + + S L+ + + L+ P Sbjct: 9 KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLETLMKALDIP 68 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFIST 97 F+ E+N ++D + Sbjct: 69 PEELFNFQKLSGVTDIEEKNLMLDIHRS 96 >gi|154498955|ref|ZP_02037333.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC 29799] gi|150271795|gb|EDM99021.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC 29799] Length = 115 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R G++Q L E +GI+ V + E+G ++ L ++ L ++ Sbjct: 10 IGTNIAKYREAAGLTQAALAEIIGISTAFVSRVERGQKKMKVETLYATAKALNVSVNALL 69 Query: 75 DVSPTVCS 82 + Sbjct: 70 STDSSAAQ 77 >gi|89895494|ref|YP_518981.1| hypothetical protein DSY2748 [Desulfitobacterium hafniense Y51] gi|89334942|dbj|BAE84537.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 118 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE--KGVNRVGASRLQHISEVLESPI 70 I +G RI R + M+Q++L E +GIT + + + E V + L I+++ P Sbjct: 50 IQIGLRIAYYRKLNEMTQDQLAERIGITSKYLSQVETPSCVQPISLKTLFAIADLFHVPP 109 Query: 71 SFFFDVSPT 79 F + Sbjct: 110 HKFLEFDKD 118 >gi|309800668|ref|ZP_07694811.1| HTH-type transcriptional regulator xre [Streptococcus infantis SK1302] gi|308115743|gb|EFO53276.1| HTH-type transcriptional regulator xre [Streptococcus infantis SK1302] Length = 111 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 7/99 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-- 75 R++ R+ ++Q+++ + Q ++EKG+ + A LQ +++ + Sbjct: 6 RLKEIRLNNKLTQKEVANHFQTSPQSYAQWEKGLRKPSAENLQKLADFFNVSTDYLLGKT 65 Query: 76 --VSPTVCSDISSEENNVMDFISTP---DGLQLNRYFIQ 109 P D+ + +N + F TP D ++ + +++ Sbjct: 66 DLPEPDSDIDLDTAIDNSVAFDGTPITDDDREIIKNYLK 104 >gi|296327461|ref|ZP_06870007.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155287|gb|EFG96058.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 205 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-S 71 INVG I+ R + + + GI+ + + EKG + ++ I++VLE P+ Sbjct: 25 INVGITIKNIRKSKKLLLKDVALKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFK 84 Query: 72 FFFDVSPT 79 FF D+ Sbjct: 85 FFMDLEKE 92 >gi|296110822|ref|YP_003621203.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154] gi|295832353|gb|ADG40234.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154] Length = 93 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++G IR R ++Q +L + L +T + YE G L I+ L + ++ Sbjct: 24 KHIGNNIRYLRYANKITQYQLAKILHVTQSTIAHYENGTRIPDIDNLMDIARNLGADMN 82 >gi|229589612|ref|YP_002871731.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229361478|emb|CAY48354.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 65 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R LG SQ L E LG++ Q + E G I++V E PI F+ Sbjct: 5 MRQLRSELGWSQADLAERLGVSRQTINAIETGRYDPSLPLAFKIAKVFERPIEGIFEAP 63 >gi|226362736|ref|YP_002780514.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226241221|dbj|BAH51569.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 206 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 7/93 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R ++ ++L GIT + K E+ + L I L P+ F Sbjct: 18 IGPRLKAARQAQRLTLDELAAGCGITKGYLSKIERDHASASVATLVRICAALNIPVGSLF 77 Query: 75 DVSPTVC-------SDISSEENNVMDFISTPDG 100 + S IS + +F+ TP G Sbjct: 78 ENSAAGEVVRADAYPPISFGGERMAEFLLTPFG 110 >gi|183600119|ref|ZP_02961612.1| hypothetical protein PROSTU_03654 [Providencia stuartii ATCC 25827] gi|188022407|gb|EDU60447.1| hypothetical protein PROSTU_03654 [Providencia stuartii ATCC 25827] Length = 123 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R G++ G + ++ QQ+ +YE G+N + S L + E L+ + F Sbjct: 19 IGRTLKRLRQNQGLTGADFGRLVNLSQQQISRYECGINHINVSMLLLLLEKLDITVGEF 77 >gi|19703890|ref|NP_603452.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714054|gb|AAL94751.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 199 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-S 71 INVG I+ R + + + GI+ + + EKG + ++ I++VLE P+ Sbjct: 19 INVGITIKNIRKSKKLLLKDVALKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFK 78 Query: 72 FFFDVSPT 79 FF D+ Sbjct: 79 FFMDLEKE 86 >gi|320528760|ref|ZP_08029911.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320130843|gb|EFW23422.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 349 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R +SQE+L L IT Q V K+E + L I+ + I Sbjct: 13 MTLGKTLKQLRKETFLSQEQLAAKLNITAQAVSKWENEESYPDILFLPKIAAIFGIKIDE 72 Query: 73 FFDVSPTVC 81 FD + Sbjct: 73 LFDYNQESA 81 >gi|310659792|ref|YP_003937513.1| hypothetical protein CLOST_2493 [Clostridium sticklandii DSM 519] gi|308826570|emb|CBH22608.1| protein of unknown function [Clostridium sticklandii] Length = 234 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 13 INVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ G+ I+ R + M+QE+L E LG++ Q V K+E V ++ I ++ + Sbjct: 1 MSFGQNIQFLRKMRNKMTQEELAEKLGVSRQTVSKWELDVMYPEMDKVIEICKLFSCSMD 60 Query: 72 FF----FDVSPTVCSDISSEENNVMDFIS 96 +VS SDI E +I Sbjct: 61 ELIRNDMNVSDEAYSDIRMEYVEPFRYIR 89 >gi|284007367|emb|CBA72754.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 134 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 16/118 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++++ +R+ R G++Q+ L + I QQ+++YE G + A L+ ++ VL Sbjct: 9 INMSFSQRVVTLRKQRGLTQQGLSDATCIHVQQIKRYESGSSLPTADALKKLAVVLHVTS 68 Query: 71 SF-FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE--LVRS 125 F F+ + +++ + F + L D V + +I+ +V+S Sbjct: 69 DFLLFE-----PEECEPKDDMKLRF----EALAAMSA----TDQAVVKAVIDAIMVKS 113 >gi|302869253|ref|YP_003837890.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504272|ref|YP_004083159.1| transcriptional regulator, xre family [Micromonospora sp. L5] gi|302572112|gb|ADL48314.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410891|gb|ADU09008.1| transcriptional regulator, XRE family [Micromonospora sp. L5] Length = 81 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI + R G+S+ +L + LG+ +Q V E+G R I+ E P+ F Sbjct: 5 VHNRIAVLRAERGISRRQLADALGVHYQTVGYLERGEFRPSLHLALRIAAYFEVPVEVVF 64 Query: 75 DVSP 78 + P Sbjct: 65 SIEP 68 >gi|253577297|ref|ZP_04854615.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843301|gb|EES71331.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 117 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR+R R + ++QEKL E + ++ + + E+G + L ++ L + + Sbjct: 6 LGKRLRQERHKMHLTQEKLAERIEVSDAYIGQIERGERSLSLETLVKLANQLGVTVDYLL 65 Query: 75 DVSPTVCSD 83 S + D Sbjct: 66 HDSIEISDD 74 >gi|228911766|ref|ZP_04075535.1| transcriptional regulator [Bacillus thuringiensis IBL 200] gi|228847858|gb|EEM92743.1| transcriptional regulator [Bacillus thuringiensis IBL 200] Length = 186 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R MSQEKL E + ++ Q + +E N L +S + + Sbjct: 1 MNIGRQIQYFRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|225375548|ref|ZP_03752769.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] gi|225212527|gb|EEG94881.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] Length = 145 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R + MSQ++L + +G++ Q + KYE G + R + +++V + Sbjct: 14 QLRKLNHMSQDELADQIGVSRQTLSKYETGESLPDIERCKRLADVFGVTVDDL 66 >gi|239814987|ref|YP_002943897.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801564|gb|ACS18631.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R RM +S +L + GI+ + + E+G+ L+ +++ L P S FF Sbjct: 9 IGAQVRALRMAAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 68 >gi|188992517|ref|YP_001904527.1| hypothetical protein xccb100_3122 [Xanthomonas campestris pv. campestris str. B100] gi|167734277|emb|CAP52487.1| hypothetical protein predicted by Glimmer/Critica [Xanthomonas campestris pv. campestris] Length = 128 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V R+R R G+SQ ++G +G+ ++ +YE G + L ++E LE P Sbjct: 12 VAARLRQARERQGLSQREVGMRMGLDKDTASARISRYESGAMSISLEALFEMAEALEVPP 71 Query: 71 SFFFDVSPTVCSDI 84 +F SP + I Sbjct: 72 AFLLASSPGMADAI 85 >gi|167032863|ref|YP_001668094.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859351|gb|ABY97758.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 177 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +V +R R GMSQ L E G++ + + E G V + L I+E L Sbjct: 4 HVSLNVRSLRNAAGMSQTALAERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGV 58 >gi|187250867|ref|YP_001875349.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Elusimicrobium minutum Pei191] gi|186971027|gb|ACC98012.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Elusimicrobium minutum Pei191] Length = 214 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 38/81 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I R L ++Q++L + +G+ + ++E ++ +S+ L + Sbjct: 1 MSIGKKILQARRELNLTQKELAQKIGLPGSTIARWETDSFSPSPKNIEKLSKALGREYKY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 F++ + + + + D Sbjct: 61 FYETQEDIFTVFKKAKGEIRD 81 >gi|153813367|ref|ZP_01966035.1| hypothetical protein RUMOBE_03786 [Ruminococcus obeum ATCC 29174] gi|149830544|gb|EDM85635.1| hypothetical protein RUMOBE_03786 [Ruminococcus obeum ATCC 29174] Length = 84 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+ +GK +R R G+SQEKL L I KYE G + S L + ++ Sbjct: 11 DVYIGKNLRRLREKFGLSQEKLCAELQCRNCDIGRSTYAKYENGELNIRISVLMELKKIY 70 Query: 67 ESPISFFFDVSPT 79 FFD + Sbjct: 71 NCSYDEFFDDLDS 83 >gi|309776993|ref|ZP_07671962.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915203|gb|EFP60974.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 99 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G+ I+ + M+Q +LGE LG++ + + KY G + L+ I +L+ I+ Sbjct: 2 RNIGEIIQDNLEMKNMTQSELGERLGLSQKAISKYVTGKSLPSIDTLEKICSILDVNITS 61 Query: 73 FFDVS 77 F+++ Sbjct: 62 CFNLN 66 >gi|259417313|ref|ZP_05741232.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259346219|gb|EEW58033.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 204 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NVG IR RR L ++ + L + G++ + + E+ L IS L+ + +F Sbjct: 11 NVGPAIRKRRKQLKLTLQALCDKSGVSVGYLSQVERDNATPSLGTLAQISAALDVGLDYF 70 Query: 74 FDVSPTVCS 82 S Sbjct: 71 ISASKPSDG 79 >gi|228938970|ref|ZP_04101570.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971851|ref|ZP_04132472.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978459|ref|ZP_04138836.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228781476|gb|EEM29677.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228787941|gb|EEM35899.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820819|gb|EEM66844.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939471|gb|AEA15367.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 149 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIHNLILLSEMYNVTLD 59 >gi|229076564|ref|ZP_04209524.1| hypothetical protein bcere0024_50030 [Bacillus cereus Rock4-18] gi|229099783|ref|ZP_04230708.1| hypothetical protein bcere0020_50010 [Bacillus cereus Rock3-29] gi|229118845|ref|ZP_04248194.1| hypothetical protein bcere0017_51100 [Bacillus cereus Rock1-3] gi|228664646|gb|EEL20139.1| hypothetical protein bcere0017_51100 [Bacillus cereus Rock1-3] gi|228683672|gb|EEL37625.1| hypothetical protein bcere0020_50010 [Bacillus cereus Rock3-29] gi|228706597|gb|EEL58810.1| hypothetical protein bcere0024_50030 [Bacillus cereus Rock4-18] Length = 285 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGIEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|164687366|ref|ZP_02211394.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] gi|164603790|gb|EDQ97255.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] Length = 125 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R +SQ KL + LGI+ + YE+G + L I++ + + Sbjct: 3 GQNLKKLRTSKNLSQSKLSKILGISSSTIGMYEQGRRFPDQTILTKIADFFDVSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFI 95 +P + + M+FI Sbjct: 63 RNPQNPPTEFNNATDAMEFI 82 >gi|254302178|ref|ZP_04969536.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322370|gb|EDK87620.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 184 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + +I + Sbjct: 61 LIEDEEDDIRNIEHIKKENIRYIES 85 >gi|158317409|ref|YP_001509917.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158112814|gb|ABW15011.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 490 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEV 65 P P + +G +R R G++Q++L + LG V K E G + S L+HI+ Sbjct: 12 RPTPTSVGIGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARN 71 Query: 66 LE 67 L Sbjct: 72 LG 73 >gi|312794293|ref|YP_004027216.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181433|gb|ADQ41603.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 68 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G++IR R G+SQ + + G++ + + E G S ++ IS+ L+ I F Sbjct: 4 GRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKTNPSLSVIKKISKALKVDIKVFI 63 Query: 75 DVSP 78 + Sbjct: 64 EEGE 67 >gi|303238807|ref|ZP_07325339.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593686|gb|EFL63402.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 194 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G I R GM+Q++L + + I+ + + K+E+G+ S L +S +L I Sbjct: 7 GNLICSLRKEKGMTQKQLADTMNISDKTISKWERGLGCPDVSLLPELSALLGVNI 61 >gi|291531986|emb|CBK97571.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 110 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +Q+++ + LG + Q KYE G + R +++ + + + Sbjct: 5 QRLRDLREDADKTQQEIADYLGTSAQHYGKYESGKAEIPLERAVLLAKYYNVSLDYIAGI 64 Query: 77 SPTVCSDISSEENNVMDFISTP 98 S + S + + +S Sbjct: 65 SSSRHPLTSDSSLSPIGILSDK 86 >gi|169335193|ref|ZP_02862386.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis DSM 17244] gi|169257931|gb|EDS71897.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis DSM 17244] Length = 120 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R G +QE L E + ++ + E G+ ++ + I++ L + Sbjct: 8 VGGKIKEARKKQGYTQETLAEIIDLSASHLSHVESGIAKISLPTIVAIAKTLNVSLDDLL 67 Query: 75 DVSPTVCS 82 + S Sbjct: 68 SLEIDNQS 75 >gi|314937137|ref|ZP_07844484.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|313655756|gb|EFS19501.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 292 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 39/70 (55%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K + + VGKRI+ R G++QE G+ G + V +EKG++ ASRL+ Sbjct: 1 MLRRKIMYSYNKEQVGKRIKSIRQQKGLTQESFGKLFGASKGNVATWEKGISLPNASRLR 60 Query: 61 HISEVLESPI 70 I++++ + Sbjct: 61 EIADLVSITV 70 >gi|312868622|ref|ZP_07728816.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095831|gb|EFQ54081.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 68 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 RIR R GMSQ +LG +G++ Q + YE + R+ + ++ L ++ Sbjct: 3 NRIRECRKAAGMSQAELGNIVGLSRQAISLYEINL-RMPTFEMWECLASALHVSPAYL 59 >gi|253577026|ref|ZP_04854349.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843636|gb|EES71661.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 143 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +QE+LG L +T + YE G L IS V I + S Sbjct: 6 RLKQLRKEHKWTQEELGAKLNLTKVSISGYENGNRTPDMDTLIKISNVFNVSIDYLVGKS 65 Query: 78 PTVCSDISSEENNVM 92 D V+ Sbjct: 66 DVRSVDSPIISGQVL 80 >gi|253582192|ref|ZP_04859415.1| transcription regulator [Fusobacterium varium ATCC 27725] gi|251835731|gb|EES64269.1| transcription regulator [Fusobacterium varium ATCC 27725] Length = 185 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG I+ R+ G+ + + E I+ + + EKG + ++ I++ LE P+ Sbjct: 5 INVGAIIKRIRIEKGLLLKDVAEKCEISSSMLSQIEKGNANPSLNTIKSIAQALEIPLFK 64 Query: 73 FF 74 FF Sbjct: 65 FF 66 >gi|229181840|ref|ZP_04309148.1| Transcriptional regulator [Bacillus cereus 172560W] gi|228601638|gb|EEK59151.1| Transcriptional regulator [Bacillus cereus 172560W] Length = 116 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ L +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRLEHKMNQEQFGKELDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNYLYGEN 65 Query: 78 PTVCSD 83 D Sbjct: 66 NVANHD 71 >gi|332983091|ref|YP_004464532.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700769|gb|AEE97710.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 124 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 17/125 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R M+QE+ G+ GI V YE + S + I++ I + Sbjct: 2 VTLGQRIKQLRKEHNMTQEEFGKLFGIVKSTVSLYEHDKSIPDDSIKKMIADYFNVSIDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + ++ + + I + +II L S+ EK+ Sbjct: 62 LMGRTDIRYPAKKTIDDKLKEVIG----------------PYIASQIIAL-ESLSQEEKQ 104 Query: 133 YRTIE 137 ++ Sbjct: 105 TISVL 109 >gi|329769474|ref|ZP_08260885.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325] gi|328838805|gb|EGF88401.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325] Length = 130 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + ++G I R GM+Q+ L + L IT + V K+E+ + + L I+E+ + Sbjct: 3 NKSMGDIISTLRKEKGMTQKDLADMLNITDKAVSKWERNIAFPDTATLPKIAEIFGVSVE 62 Query: 72 FFFDVSPTVCS 82 + + Sbjct: 63 ELMNAKSIPGN 73 >gi|258512346|ref|YP_003185780.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479072|gb|ACV59391.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 82 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R + G+S +L E G++ + E G A++L I+E L +S + Sbjct: 6 QRLRYYRKLRGLSVRELAERAGVSVSYIYAIESGARGSNAAKLGLIAEALGVSLSDLWGD 65 Query: 77 SPTVCSDISSEENNVMD 93 + DI + D Sbjct: 66 ARPEKGDIPRDPGGEND 82 >gi|229082949|ref|ZP_04215370.1| transcriptional regulator [Bacillus cereus Rock4-2] gi|228700349|gb|EEL52914.1| transcriptional regulator [Bacillus cereus Rock4-2] Length = 186 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R MSQEKL E + ++ Q + +E N L +S + + Sbjct: 1 MNIGRQIQYLRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|260586996|ref|ZP_05852909.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542680|gb|EEX23249.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 185 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R ++QE L E ++ Q V K+E G + ++ I++ E + Sbjct: 5 EQLSKLRKEANLTQEDLAEKCDVSRQAVAKWEGGESLPDVYKISQIAKTFEVSLEELIWG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 S +S + M FI + Q Sbjct: 65 KDRQDSQMSIARDIYMQFIDNMESFQ 90 >gi|315926028|ref|ZP_07922230.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620668|gb|EFV00647.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 323 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R SQE+L E +G++ Q + K+E + +RL +S++ F Sbjct: 6 KIIYLRKRAEWSQEELAEQMGVSRQSISKWEGAQSIPDMNRLLKLSQIFGVSTDFLLKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 S E + + T D L+ ++ D + R Sbjct: 66 LGPEQLTPSVETDAPEGTVTVD-LETAGAYL---DARER 100 >gi|313885500|ref|ZP_07819250.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619230|gb|EFR30669.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 327 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+ E LG++ Q V K+E + +RL +S++ + Sbjct: 6 KIIELRKKNGWSQEEFAEMLGVSRQSVSKWEGAQSTPELNRLIQMSKIFSVSTDYLLKDD 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ + D L+ ++++ Sbjct: 66 VENLDPEQADLEWLED--RRKFSLEEANSYLKLK 97 >gi|291527875|emb|CBK93461.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 205 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G+R + RR L ++Q + + +G+T +Q+YE G + +SE L + Sbjct: 8 RIIGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + + +DI+ ++ Sbjct: 68 WLKGETDSYETDITDKKE 85 >gi|260844262|ref|YP_003222040.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009] gi|257759409|dbj|BAI30906.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009] Length = 229 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI G +Q +L LG++ Q VQ + G + +L H+SE+ P S+F Sbjct: 9 NRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKTFPRSDKLAHLSEISGYPQSWFLGE 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + D + L+ F D VR +I++VRSI Sbjct: 69 DSSPTFSSQEKHQTRTDSVVFN---VLDVEFSCGDGTHVRGDLIDVVRSI 115 >gi|257139484|ref|ZP_05587746.1| helix-turn-helix domain-containing protein [Burkholderia thailandensis E264] Length = 119 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 16/117 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VGK I RR ++QE + E LG+ + + + E+G+ +RL +++V + ++ Sbjct: 15 RRVGKAIARRREESQLTQEDVAEQLGVGNEAISRIERGIVMPTVARLVQLAKVFQCNVAD 74 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + D + + ++ +S + R+ ++ +V ++ + Sbjct: 75 LLTEASHRPDDQARHLSQLLTKLS----------------PQDRETLVSIVETLAAR 115 >gi|197106394|ref|YP_002131771.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479814|gb|ACG79342.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] Length = 86 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + R+++ R SQ L E LG++ Q V E G I+ V PI Sbjct: 19 DAAMKNRLKVLRAERDWSQGDLAERLGVSRQSVNAIETGKYDPSLPLAFRIARVFGLPIE 78 Query: 72 FFFDVSPT 79 F+ Sbjct: 79 AIFEDGGA 86 >gi|188492663|ref|ZP_02999933.1| regulatory protein [Escherichia coli 53638] gi|188487862|gb|EDU62965.1| regulatory protein [Escherichia coli 53638] gi|315615351|gb|EFU95983.1| helix-turn-helix family protein [Escherichia coli 3431] Length = 229 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI G +Q +L LG++ Q VQ + G + +L H+SE+ P S+F Sbjct: 9 NRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKTFPRSDKLAHLSEISGYPQSWFLGE 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + D + L+ F D VR +I++VRSI Sbjct: 69 DSSPTFSSQEKHQTRTDSVVFN---VLDVEFSCGDGTHVRGDLIDVVRSI 115 >gi|83309267|ref|YP_419531.1| anaerobic benzoate catabolism transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944108|dbj|BAE48972.1| Shikimate kinase [Magnetospirillum magneticum AMB-1] Length = 290 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R++ R GMS++ L GI+ + + + E G V + L +++ +++PI+ Sbjct: 12 RRLGDRVKGFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTPITE 71 Query: 73 FFDVSPTVCSDISSEENNVMDFIS---TPDGLQLNR-YFIQIDDVKVRQKIIEL 122 + +D ++ + L R F + +K R +I L Sbjct: 72 LIEAEAEASHPDLPLAKKFLDQLTPDQQSEAYVLLRQNFKRGLKLKRRVALIGL 125 >gi|56419027|ref|YP_146345.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] gi|56378869|dbj|BAD74777.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] Length = 121 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 17/121 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GKR+R R + M+Q+ L + + + YE+ ++ +++ + Sbjct: 1 MTFGKRLRFLRKKMNMTQKDLADKFSLGESTIGMYERDEREPSFEFVRQLADFFNVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD-GL---QLNRYFIQIDDVKVRQ----KIIELVR 124 SE++++ + + P+ GL +L + R+ KI E+++ Sbjct: 61 L---LGRTDHPNPSEQDDIPEELKDPELGLFFKELAEA------PEERREQLLKIWEILK 111 Query: 125 S 125 S Sbjct: 112 S 112 >gi|315222450|ref|ZP_07864351.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188474|gb|EFU22188.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 133 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 41/79 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E +G+T + V K+E+ ++ + + ++++ ++ + Sbjct: 6 LGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSVDELM 65 Query: 75 DVSPTVCSDISSEENNVMD 93 + + + +++++D Sbjct: 66 QGQTVMKENKKNRKSDIVD 84 >gi|325678268|ref|ZP_08157896.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110031|gb|EGC04219.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 199 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R+ G++Q++L + + ++ + V K+E G S L ++E+ ++ I + Sbjct: 7 GALIRKLRVGKGLTQKQLADMINVSDKAVSKWECGGGCPDISLLSALAEIFDTDIQVLLN 66 Query: 76 V 76 Sbjct: 67 G 67 >gi|227502499|ref|ZP_03932548.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|306835073|ref|ZP_07468116.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|227076772|gb|EEI14735.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|304569054|gb|EFM44576.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 469 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAGTLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S + D I + Sbjct: 65 ------SRDDDSRLLAEIQDVIQDKE 84 >gi|160891591|ref|ZP_02072594.1| hypothetical protein BACUNI_04044 [Bacteroides uniformis ATCC 8492] gi|270295331|ref|ZP_06201532.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478327|ref|ZP_07937491.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] gi|156858998|gb|EDO52429.1| hypothetical protein BACUNI_04044 [Bacteroides uniformis ATCC 8492] gi|270274578|gb|EFA20439.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905486|gb|EFV27276.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] Length = 191 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D Sbjct: 67 DDQDENGP 74 >gi|56964891|ref|YP_176622.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911134|dbj|BAD65661.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 109 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 KR+R R ++Q+ + LGIT YE+G N +L+ ++E+ IS+ Sbjct: 6 KRLRELRKAHQLTQQDVASFLGITESAYGFYEQGRNEPSLRKLKQLAEIYHVSISYL 62 >gi|328956484|ref|YP_004373870.1| conserved hypothetical protein; possible transcriptional regulator A [Carnobacterium sp. 17-4] gi|328672808|gb|AEB28854.1| conserved hypothetical protein; possible transcriptional regulator A [Carnobacterium sp. 17-4] Length = 172 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 10/102 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RM SQ + + L I+ Q + K+E G + L +S + I Sbjct: 1 MVLGERLKQSRMNKRYSQGDVAKHLHISRQSISKWENGNSYPDLDNLAKLSTYYDVSIDE 60 Query: 73 FFDVS----PTVCSDISSEENNVMDFI------STPDGLQLN 104 + + ENNV + +GL L Sbjct: 61 LLKEDQKLKKEIEENKGETENNVHKLVFIHGDTDKDEGLILL 102 >gi|326388765|ref|ZP_08210354.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206789|gb|EGD57617.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 190 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR RR LGM+ + L G++ + + E+ + L I+ L +S+F Sbjct: 16 IGAAIRDRRKRLGMTLQALATASGLSAPFLSQVERDLAMPSLVSLTAIAAALGVEMSYFV 75 Query: 75 DVSPT 79 P Sbjct: 76 GTPPP 80 >gi|326382822|ref|ZP_08204512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326198412|gb|EGD55596.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 186 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 6/98 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ +G R+R R G+S +L I + + E G L + L+ P++ Sbjct: 3 DLGIGDRLRELRAARGLSLSELARRADIGKATLSEIESGRRNPNIETLYALCAPLDVPLT 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP----DGLQLNR 105 +P + V +ST + +++ R Sbjct: 63 GMLGETPGTHGTAAG--GMVTVLLSTRHLPAETVEVFR 98 >gi|289422894|ref|ZP_06424724.1| transcriptional regulator, xre family [Peptostreptococcus anaerobius 653-L] gi|289156699|gb|EFD05334.1| transcriptional regulator, xre family [Peptostreptococcus anaerobius 653-L] Length = 212 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +N G++I+ R ++Q+K+ + L ++ Q V +E N + ++S Sbjct: 1 MNFGEQIKKIRAEKNLTQQKMADMLNVSRQAVSNWENDKNLPDIEMIINMSRAFN 55 >gi|284006177|emb|CBA71418.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 130 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 35/58 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI RR LG+ L + +G++ V ++E+GV+ +G +L +ISE L+ + Sbjct: 9 IGRRIYERRTELGLRAIDLADLIGVSRVAVSQWERGVSVLGGDKLMNISEALKCSPEW 66 >gi|284034421|ref|YP_003384352.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813714|gb|ADB35553.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 200 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R RR G+S +L GI + + E G + +S L P+S Sbjct: 14 LGVNLRARRDEQGISLSELARRSGIAKGTLSQLESGAGNPTIETVFSLSNALGVPVSALL 73 Query: 75 DVSPTV 80 P Sbjct: 74 SEPPAS 79 >gi|226305059|ref|YP_002765017.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184174|dbj|BAH32278.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 470 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 12/101 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 F------------DVSPTVCSDISSEENNVMDFISTPDGLQ 102 +V+ I ++ + + + +ST GL Sbjct: 65 SPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVSTHPGLA 105 >gi|126649566|ref|ZP_01721807.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] gi|126593891|gb|EAZ87814.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] Length = 129 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGE---CLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+++R+ R+ G+SQE++ E LG + +V E G + + S L+ + + L+ P Sbjct: 6 KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLEILMKALDIP 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFIST 97 F+ E+N ++D + Sbjct: 66 PEELFNFQKLSGVTDIEEKNLMLDIHRS 93 >gi|73697820|gb|AAZ81517.1| PlcR [Bacillus weihenstephanensis] Length = 285 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNV-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|34762120|ref|ZP_00143128.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741413|ref|ZP_04571894.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256846585|ref|ZP_05552042.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294784172|ref|ZP_06749473.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] gi|27888197|gb|EAA25255.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430945|gb|EEO41157.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256718354|gb|EEU31910.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294488242|gb|EFG35587.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] Length = 184 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + +I + Sbjct: 61 LIEDEEDDIRNIEHIKKENIRYIES 85 >gi|295133170|ref|YP_003583846.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294981185|gb|ADF51650.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 136 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 13/133 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL Sbjct: 15 HIGRKISRIRELRGMKQETLAAELGISQQSVSSLEQSEH-IEDEKLERVAKVLGV----- 68 Query: 74 FDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 S + S E +N+ +F F + K++EL +V +EK Sbjct: 69 ---SKEAIENFSEESIFHNINNFNDNSVNNGPLNNFHCTFNPL--DKVVELYERLVQAEK 123 Query: 132 KYRTIEEECMVEQ 144 E+ + ++ Sbjct: 124 DKVAYLEKLLEKK 136 >gi|290968573|ref|ZP_06560111.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] gi|290781226|gb|EFD93816.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] Length = 117 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R G++Q + G G++ Q V +E G+ S L +++ + PI Sbjct: 1 MTLGQEIKFYRKKKGLTQTEFGAVFGMSKQAVYSWETGLYAPDISVLLKMADFFQIPICM 60 Query: 73 FFDVSPTVCSD-ISSEENNVMDFISTPDGLQL 103 C D ++ +++ F+S D L Sbjct: 61 LVGRPGVYCRDQEAAADHSDCTFVSKKDSRIL 92 >gi|171779415|ref|ZP_02920379.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282032|gb|EDT47463.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 226 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G++++ R G SQ L + L I+ +E G + L +S++ + ++F Sbjct: 4 GEKLKALRQENGYSQADLAKRLQISRASYFNWENGKTKPNQKNLGQLSQIFKVDETYF 61 >gi|120406457|ref|YP_956286.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959275|gb|ABM16280.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 222 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ +RL R+ G++ + +GI+ + K E S L +++ + P+ Sbjct: 35 IEAAIGRNVRLLRLQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPV 94 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIS--TPDGLQ 102 + F + + + T +G + Sbjct: 95 TSLFRGADVERPAAFVKAGTGARIVREGTREGHE 128 >gi|85375066|ref|YP_459128.1| DNA-binding protein, putative [Erythrobacter litoralis HTCC2594] gi|84788149|gb|ABC64331.1| DNA-binding protein, putative [Erythrobacter litoralis HTCC2594] Length = 220 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 12/110 (10%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D ++GKR+ R G++ ++ E LG++ V +E ++ ASR+ I+EVL Sbjct: 120 IDRASLGKRLATMRQERGLTLAQVAEELGVSKPTVWAWEHDRSQPVASRISAIAEVLGVS 179 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++ D S E+ + + ++ +VR I Sbjct: 180 -----EIELATGRDTSQAEHAIA------ETREMIAKAYGCTPQQVRISI 218 >gi|255025294|ref|ZP_05297280.1| hypothetical protein LmonocytFSL_01392 [Listeria monocytogenes FSL J2-003] Length = 158 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G SQ KL + LG + QV YE+G L I+E + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 +D + +D +T + ++ +I Sbjct: 64 DDNNLADTIAAH---IDSNATEEDIKEILAYI 92 >gi|228957400|ref|ZP_04119156.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802278|gb|EEM49139.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 149 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGQNYPSIEIIIHLSDLFSITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + I + + Sbjct: 65 DEELTQKIIEDSKQLA 80 >gi|54024079|ref|YP_118321.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54015587|dbj|BAD56957.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 204 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 31/70 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++R R G+S ++ +GI+ + K E S + ++ L+ P++ F Sbjct: 19 IARQVRALRRAAGLSVAEMAAKVGISKAMLSKIENAQTSCSLSTVARLAAGLDVPVTSLF 78 Query: 75 DVSPTVCSDI 84 + + + Sbjct: 79 RGADSAREAV 88 >gi|332971234|gb|EGK10197.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 108 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+R++ R ++Q +L + LG+ + K+E + ++ I++ + Sbjct: 1 MSFGQRLKELRKKRKITQAELAKVLGVDNTTISKWESNTYEPEMTAIKEIADFFNVSADY 60 Query: 73 FF---DVSPTVCSDISSEENNVMDFI--STPDGLQLNRYFIQ 109 +V ++ + ++ MD + + ++ + FI+ Sbjct: 61 LLGRTNVPSQFETEAAHRTDDPMDDLPQQAREDIEKFKEFIR 102 >gi|294633078|ref|ZP_06711637.1| DNA-binding protein [Streptomyces sp. e14] gi|292830859|gb|EFF89209.1| DNA-binding protein [Streptomyces sp. e14] Length = 482 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 10/124 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R GM+Q ++ LGI+ + E+ + A+ L I+EV FF + Sbjct: 14 AKLRRLRREHGMNQVEMARALGISTSYANQIEQSRRPLTATVLLRIAEVFGVDPEFFSEA 73 Query: 77 S-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + +++ + + +PD +L VR EL R++V+ ++YR Sbjct: 74 DQDRLAAELRTALADEACGAPSPDPRELAEA--------VRDH-PELARALVALHRRYRD 124 Query: 136 IEEE 139 E+ Sbjct: 125 TAEQ 128 >gi|289661631|ref|ZP_06483212.1| XRE family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 142 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 18 RIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ RR +G++Q+ LGE LG I ++ +YE ++ ++EVL +S Sbjct: 38 RLKARRQAMGLTQQDLGEALGLEGRIAQSRISRYEIELHTPDLKTAYELAEVLGVSLSAL 97 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 SD + ++ +S + L + Q+ K ++ Sbjct: 98 -----VAESDRLGQIIELIRKLSDDEQEALAKRLRQLTKPKRPRR 137 >gi|229150820|ref|ZP_04279032.1| Transcriptional regulator (Phage-related) protein [Bacillus cereus m1550] gi|228632609|gb|EEK89226.1| Transcriptional regulator (Phage-related) protein [Bacillus cereus m1550] Length = 138 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R + + Q + E L I+ YE+G N ++ ++E + +S+ Sbjct: 8 YIKERLKRLRKLHNLKQRDVAEYLDISESAYGYYEQGRNEPSLDSVRKLAEKYDVSVSYL 67 Query: 74 FDVSPTVCS 82 + + Sbjct: 68 LGETDEEGN 76 >gi|223983578|ref|ZP_03633760.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] gi|223964464|gb|EEF68794.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] Length = 353 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 5/100 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR LG++Q+++ E LG++ V K+E G + + L ++ +L++ ++ Sbjct: 7 IRQRRKELGLTQDRVAELLGVSAPAVNKWENGNSYPDITLLPPLARLLKTDLNTLLSFQD 66 Query: 79 TVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + ++++ N V + + T L F D +VR+ Sbjct: 67 ELTDLEVANLMNEVAEQVKTG---DLEAAFEMARD-RVRE 102 >gi|148378758|ref|YP_001253299.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153933921|ref|YP_001383147.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937706|ref|YP_001386695.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288242|emb|CAL82316.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152929965|gb|ABS35465.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933620|gb|ABS39119.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 64 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +++++ R+ +SQ++L E +G+T Q + E G I EVL ++ F Sbjct: 2 VNRKMKIARVECDLSQQQLAEKVGVTRQTISMIESGKYNPSLKLCIGICEVLNKTLNDLF 61 >gi|325917919|ref|ZP_08180091.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325535865|gb|EGD07689.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 66 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R+R R G SQ +L E LG++ Q + E G I+ + PI F + Sbjct: 3 SRVRELRESNGWSQGELAEQLGVSRQTINALETGKYDPSLPLAFRIARLFGEPIEQVFLY 62 Query: 75 DVSP 78 + + Sbjct: 63 EGNE 66 >gi|258592092|emb|CBE68397.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 410 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R R G+ L + +G+T V +YE V ++ I+ L+ P +F Sbjct: 10 GARLREAREARGLPAIALADLIGVTRAAVSQYENSVQTPRPEVMEKIARTLQLPQEYF 67 >gi|282856547|ref|ZP_06265821.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] gi|282585613|gb|EFB90907.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] Length = 127 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R L M+Q++L + ++ +Q E L +++ L S Sbjct: 1 MTLGLRIRTLRKALKMTQQQLADATEVSRIYIQALESNRRSPSMKLLHRLADKLGVETSD 60 Query: 73 FFDVSPTVCSD 83 + P Sbjct: 61 LLEEFPRDNGG 71 >gi|229490209|ref|ZP_04384056.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229322957|gb|EEN88731.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 470 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 12/101 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 F------------DVSPTVCSDISSEENNVMDFISTPDGLQ 102 +V+ I ++ + + + +ST GL Sbjct: 65 SPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVSTHPGLA 105 >gi|229105942|ref|ZP_04236566.1| hypothetical protein bcere0019_50660 [Bacillus cereus Rock3-28] gi|228677516|gb|EEL31769.1| hypothetical protein bcere0019_50660 [Bacillus cereus Rock3-28] Length = 289 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGIEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|156934075|ref|YP_001437991.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] gi|156532329|gb|ABU77155.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] Length = 191 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 I + ++ +G+RIR+ R G S +L E G++ + K E+G + A+ L +S Sbjct: 2 NNIIDTLNQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSG 61 Query: 65 VLESPIS 71 L +S Sbjct: 62 ALGLSMS 68 >gi|325961603|ref|YP_004239509.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323467690|gb|ADX71375.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 201 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G R+R R G + ++L E G++ + V E+G L IS+ L Sbjct: 12 IGSRVRQERQSRGWTLDQLAEAAGVSRRMVVNVEQGAANPSVGTLLRISDALGI 65 >gi|297617956|ref|YP_003703115.1| hypothetical protein Slip_1795 [Syntrophothermus lipocalidus DSM 12680] gi|297145793|gb|ADI02550.1| protein of unknown function DUF955 [Syntrophothermus lipocalidus DSM 12680] Length = 371 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R++ R ++G+SQ + L IT V E G L I+ P+SFFF Sbjct: 7 GERVKQARELIGLSQTEFARRLNITQPAVALIEAGRFTPSEELLNQIAFQTGFPVSFFF 65 >gi|319936789|ref|ZP_08011201.1| hypothetical protein HMPREF9488_02035 [Coprobacillus sp. 29_1] gi|319808057|gb|EFW04629.1| hypothetical protein HMPREF9488_02035 [Coprobacillus sp. 29_1] Length = 366 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I R G++Q++L E +G++ V K+E L ++ + + Sbjct: 4 LNLGKNIVYYRRKNGLTQDQLAEYIGVSKSSVSKWENNFTFPDIILLPQLAALFNISVDE 63 Query: 73 FFDVSPTVCSD 83 SP + + Sbjct: 64 LMGYSPQLSKE 74 >gi|256810133|ref|YP_003127502.1| XRE family transcriptional regulator [Methanocaldococcus fervens AG86] gi|256793333|gb|ACV24002.1| transcriptional regulator, XRE family [Methanocaldococcus fervens AG86] Length = 319 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 9/90 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP----IS 71 GK ++ R +G+S KL E +G++ + + KYE I E L+ P I Sbjct: 127 GKVLKEVREAMGISVGKLAEVVGVSRKAIYKYETQAANPSVDVAIKIEEYLDVPLVKGID 186 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL 101 F P ++ ++ N+ DF + + Sbjct: 187 LF---EPIKDENVENKLENLEDF--KKEAI 211 >gi|255307046|ref|ZP_05351217.1| putative regulatory protein [Clostridium difficile ATCC 43255] Length = 120 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 15/125 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI++ R+ G++QE + + +T + E G +V L I+ L + Sbjct: 8 IGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVDTL- 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + V S E D S D ++ + ++EL++S ++ +K R Sbjct: 67 -LCDNVLSSKVIFEKEAKDIFSDCDEYEI-------------RSLVELLKSAKTAIRKDR 112 Query: 135 TIEEE 139 I ++ Sbjct: 113 EIRKQ 117 >gi|209918882|ref|YP_002292966.1| putative phage repressor [Escherichia coli SE11] gi|209912141|dbj|BAG77215.1| putative phage repressor [Escherichia coli SE11] Length = 215 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 5 LGIRLKKLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLL 64 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 + VS S + S + + S Sbjct: 65 YGVSSPELSFVQSNPGTKIPYFS 87 >gi|167761228|ref|ZP_02433355.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] gi|167660894|gb|EDS05024.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] Length = 234 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 + ++ R M+QE+L E + ++ Q + K+E G ++ + E+ + Sbjct: 6 ENLQFYRKKADMTQEELAERMEVSRQTISKWESGATYPEMEKILQLCEMFRCDMDTLIRG 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 D + + D + + + +F Sbjct: 66 DATESFAEDNAQYDQHKNEF 85 >gi|254249643|ref|ZP_04942963.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124876144|gb|EAY66134.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 200 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 11/130 (8%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV + D + +G +IR R L + + GI+ + + E+G+ + L Sbjct: 9 MVPPTENSRSADAVALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSL 68 Query: 60 QHISEVLESPISFFFDVSPTVCS----------DISSEENNVMDFISTPDGLQLNRYFIQ 109 I+ L + +F D S + N + +G QL ++ Sbjct: 69 AGIAHALGVTVQYFVDTPSEERSVCRGDQLRFFGFADSANLFARLTNVSEGRQLEAILVR 128 Query: 110 IDDVKVRQKI 119 + + R ++ Sbjct: 129 MPPGQKRSEV 138 >gi|87201027|ref|YP_498284.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] gi|87136708|gb|ABD27450.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 1 MVGNKKIPNPVDINVG--KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M K + DI +G +R+ R G++Q L E +G+ +Q++E+G + Sbjct: 1 MAVPLKFASGQDIPMGYLERLAALRKRKGLTQVDLAERMGVEQPTIQRWERGQREPKFEQ 60 Query: 59 LQHISEVLESPIS 71 L ++E+L S Sbjct: 61 LFRLAEILGVDAS 73 >gi|53718202|ref|YP_107188.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167737073|ref|ZP_02409847.1| putative DNA-binding protein [Burkholderia pseudomallei 14] gi|167814187|ref|ZP_02445867.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|52208616|emb|CAH34552.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 125 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 44/99 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P + +G+ I R G++Q + E + + + V ++E+G G + L+ + VL Sbjct: 1 MPTSLASVIGRNIASVRKQRGLTQAAVAEQIDVDAETVSRFERGAVMPGVATLERLCAVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 E + S ++ + +++ ++ D L L Sbjct: 61 ECSWMDLLEGSSGDAQQVAHDIVRLLEPLAGDDRLFLLE 99 >gi|319939789|ref|ZP_08014145.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] gi|319811002|gb|EFW07317.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] Length = 133 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 41/79 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E +G+T + V K+E+ ++ + + ++++ ++ + Sbjct: 6 LGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSVDELM 65 Query: 75 DVSPTVCSDISSEENNVMD 93 + + + +++++D Sbjct: 66 QGQTVMKENKKNRKSDIVD 84 >gi|331646784|ref|ZP_08347887.1| putative helix-turn-helix-containing protein [Escherichia coli M605] gi|331045536|gb|EGI17663.1| putative helix-turn-helix-containing protein [Escherichia coli M605] Length = 153 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +RL R L + Q + + +G+T Q K+E G N AS ++ +SE+L Sbjct: 6 LRLNREKLKLKQSDIADYVGVTTQTYMKWENGKNEPKASHIKKLSEILNV 55 >gi|325677790|ref|ZP_08157432.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324110344|gb|EGC04518.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 197 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G++I+ R G+++ + E LG +Q++E G + L HI++VL + Sbjct: 137 IGRKIQKYREERGLTRNEFAEMLGCVMPTIQRWESGTRVPDVTMLMHIAKVLGVGV 192 >gi|284030440|ref|YP_003380371.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809733|gb|ADB31572.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 508 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 16/125 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G +Q +L + LG + V + EKG + L I E L+S I Sbjct: 9 IGNLIRDARKHRGWTQTQLADVLGTSQSAVNRIEKGHQNLTLEMLARIGEALDSEIVSLG 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPD-GLQL------------NRYFIQIDDVKVRQKIIE 121 + + + +D S+ + G+ L R +I++V +++E Sbjct: 69 GGPVHLRVAGGRQLSGSIDVKSSKNAGVALLCASLLNKGRTTLRKVARIEEVN---RLLE 125 Query: 122 LVRSI 126 ++ SI Sbjct: 126 VLNSI 130 >gi|219669930|ref|YP_002460365.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540190|gb|ACL21929.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 81 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE--KGVNRVGASRLQHISEVLESPI 70 I +G RI R + M+Q++L E +GIT + + + E V + L I+++ P Sbjct: 13 IQIGLRIAYYRKLNEMTQDQLAERIGITSKYLSQVETPSCVQPISLKTLFAIADLFHVPP 72 Query: 71 SFFFDVSPT 79 F + Sbjct: 73 HKFLEFDKD 81 >gi|197284839|ref|YP_002150711.1| phage protein [Proteus mirabilis HI4320] gi|194682326|emb|CAR42121.1| phage protein [Proteus mirabilis HI4320] Length = 86 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V KR++ R + ++QE+LG GI +V +YE G +R + S++L+ P Sbjct: 2 VPKRLKAARARVALTQEELGILAGIDEESAKIRVCQYESGTHRPNFETICRFSKILKVPE 61 Query: 71 SFFFDVSPTVCSDI 84 ++F+ ++ ++ Sbjct: 62 NYFYTLNDEFAEEL 75 >gi|86148029|ref|ZP_01066331.1| transcriptional regulator, putative [Vibrio sp. MED222] gi|85834162|gb|EAQ52318.1| transcriptional regulator, putative [Vibrio sp. MED222] Length = 103 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 13/100 (13%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ----KYEKGVNRVGASRLQHISE 64 NP+ + R++ R +SQ+ LG C+G+ +YEKG + L+ +++ Sbjct: 5 NPIPV----RLKEARKKAKLSQKSLGVCIGMDESSASPRMNQYEKGKHTPDVRTLKLLAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 L P+SFFF + S+E ++ ++ + +L Sbjct: 61 ELGVPLSFFF-----CEDESSAEIACLVAQMTEKEKKELI 95 >gi|312136641|ref|YP_004003978.1| transcriptional regulator [Methanothermus fervidus DSM 2088] gi|311224360|gb|ADP77216.1| transcriptional regulator [Methanothermus fervidus DSM 2088] Length = 182 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G RI+ R + +S +++ + LGI + +KYE G + S L +++ L Sbjct: 2 HEKSKEIGLRIKELRKLSNISAKEMSKFLGIPVELYKKYENGEEDIPVSLLFEVAQKLNV 61 Query: 69 PISFFFDVSPT 79 + T Sbjct: 62 DMGLLLTGKET 72 >gi|296115933|ref|ZP_06834556.1| transcriptional regulator Xre [Gluconacetobacter hansenii ATCC 23769] gi|295977505|gb|EFG84260.1| transcriptional regulator Xre [Gluconacetobacter hansenii ATCC 23769] Length = 482 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR +R +GM+Q L + LGI+ + + E + + L + + +F D Sbjct: 11 GSRIRHQRHRVGMTQSALAQRLGISASYLNQIEHDTRPLPITLLGALCTLFSVGADYFSD 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 T E + D + D ++L Sbjct: 71 TEETRGMQAVREI--LADPVFDMDAIRL 96 >gi|291529971|emb|CBK95556.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +RI+ R G SQ ++ E LG+T Q YE G + L I+E + Sbjct: 14 ERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTD 66 >gi|270300235|gb|ACZ69041.1| Transcriptional regulator, xre family [Staphylococcus aureus] Length = 207 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N G++I+ R ++Q+++G LG++ Q + +E N L IS+ + + Sbjct: 1 MNFGEQIKQLRKSNEITQQEMGARLGVSRQAISHWENNRNLPDIEMLIIISKEFDISLD 59 >gi|257469538|ref|ZP_05633630.1| MerR family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317063782|ref|ZP_07928267.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313689458|gb|EFS26293.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 185 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG I+ R+ G+ + + E I+ + + EKG + ++ I++ LE P+ Sbjct: 5 INVGAIIKRIRIEKGLLLKDVAEKCEISSSMLSQIEKGNANPSLNTIKSIAQALEIPLFK 64 Query: 73 FF 74 FF Sbjct: 65 FF 66 >gi|240103012|ref|YP_002959321.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] gi|239910566|gb|ACS33457.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] Length = 195 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV IP P+D ++ IR R LG++QE+L G+T + K E G S Sbjct: 1 MVITVIIPRPIDPSI---IRKIRKELGITQEELARKAGVTQAYIAKLESGKVDPRLSTFN 57 Query: 61 HISEVL 66 I + L Sbjct: 58 RILQAL 63 >gi|218134838|ref|ZP_03463642.1| hypothetical protein BACPEC_02741 [Bacteroides pectinophilus ATCC 43243] gi|217990223|gb|EEC56234.1| hypothetical protein BACPEC_02741 [Bacteroides pectinophilus ATCC 43243] Length = 219 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G+R + RR L ++Q + + +G+T +Q+YE G + +SE L + Sbjct: 22 RIIGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVE 81 Query: 72 FFFDVSPTVCSDISSEEN 89 + + + +DI+ ++ Sbjct: 82 WLKGETDSYETDITDKKE 99 >gi|158423697|ref|YP_001524989.1| XRE family-like protein [Azorhizobium caulinodans ORS 571] gi|158330586|dbj|BAF88071.1| helix-turn-helix XRE-family like protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + + D G IR R+ G+S +++ + G++ + + E+G++ L+ I Sbjct: 41 DEAASEHDRAFGSSIREARLARGLSLQRVADAAGLSVGLLSQVERGISSPSVRVLRAICG 100 Query: 65 VLESPISFFFDVSPTVCSD 83 L + F S+ Sbjct: 101 ALGVTVQSLFGEDGAPLSE 119 >gi|42780950|ref|NP_978197.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42736871|gb|AAS40805.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 142 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++++ R G SQE + + +G+T Q + ++E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYRWENNKSYPDIDNLILLSEMYNVTLD 59 >gi|228950422|ref|ZP_04112582.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809237|gb|EEM55698.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 117 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 7/120 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ G++Q++L + +G++ V Y +G G LQ I+ L+ + + Sbjct: 5 ERLKSLIEKKGITQQQLADVIGVSHVSVYNYVEGKKAPGTRTLQKIANYLKVTTDYLLGL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S S + D T + ++ + + + + R+K +E + V+ EK + Sbjct: 65 SD------SPDLTAGQDLQLTKEAHEILQIINDLPEEQ-RKKALEQLEMFVNYEKSKGNM 117 >gi|229079791|ref|ZP_04212324.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|228703631|gb|EEL56084.1| Transcriptional regulator [Bacillus cereus Rock4-2] Length = 116 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNYLYGEN 65 Query: 78 PTVCSD 83 D Sbjct: 66 NEANQD 71 >gi|309704472|emb|CBJ03821.1| putative phage repressor protein [Escherichia coli ETEC H10407] Length = 216 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RIR RR L ++Q+ L + G+ V +EK + + LQ ++ L+ + Sbjct: 1 MNMSDRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQPNGANLQALANALKCDPLW 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|261256870|ref|ZP_05949403.1| putative repressor protein of prophage [Escherichia coli O157:H7 str. FRIK966] Length = 217 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RIR RR L ++Q+ L + G+ V +EK + + LQ ++ L+ + Sbjct: 2 MNMSDRIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQPNGANLQALANALKCDPLW 61 Query: 73 F 73 Sbjct: 62 L 62 >gi|261415345|ref|YP_003249028.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371801|gb|ACX74546.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 138 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK IR R + G +Q L + LGI+ Q + E V +S++ + P +F Sbjct: 78 GKAIRADRGLRGWTQNVLAQKLGISIQNLSAMEHDRRPVSKKMAAKLSQIFDVPPETYF 136 >gi|218133873|ref|ZP_03462677.1| hypothetical protein BACPEC_01762 [Bacteroides pectinophilus ATCC 43243] gi|217991248|gb|EEC57254.1| hypothetical protein BACPEC_01762 [Bacteroides pectinophilus ATCC 43243] Length = 219 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G+R + RR L ++Q + + +G+T +Q+YE G + +SE L + Sbjct: 22 RIIGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVE 81 Query: 72 FFFDVSPTVCSDISSEEN 89 + + + +DI+ ++ Sbjct: 82 WLKGETDSYETDITDKKE 99 >gi|195940391|ref|ZP_03085773.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. EC4024] Length = 175 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + ++ ++ R G S KL E G++ + + E+ + S L I+ L P Sbjct: 2 DITQHLATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVP 61 Query: 70 ISFFF--DVSPTVCSDISSEE 88 S F + P D + Sbjct: 62 FSAFITPESDPQAVFDPQQQA 82 >gi|166030550|ref|ZP_02233379.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC 27755] gi|166029712|gb|EDR48469.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC 27755] Length = 114 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG I+++R+ G +QE++ + +G+ +YE +L +++ + + Sbjct: 27 MQVGLNIKIKRIGRGYTQEEIADAIGVARSTYTRYESDKRLPDIYKLCALADYFDVSLDD 86 Query: 73 F 73 Sbjct: 87 L 87 >gi|153954532|ref|YP_001395297.1| hypothetical protein CKL_1914 [Clostridium kluyveri DSM 555] gi|153954634|ref|YP_001395399.1| hypothetical protein CKL_2016 [Clostridium kluyveri DSM 555] gi|219855106|ref|YP_002472228.1| hypothetical protein CKR_1763 [Clostridium kluyveri NBRC 12016] gi|146347390|gb|EDK33926.1| Hypothetical protein CKL_1914 [Clostridium kluyveri DSM 555] gi|146347492|gb|EDK34028.1| Hypothetical protein CKL_2016 [Clostridium kluyveri DSM 555] gi|219568830|dbj|BAH06814.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 213 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 18/108 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF--- 72 G +I+ R + +Q+ LG+ L + + KYE G + L +S++ + + Sbjct: 94 GNKIKELREEMNWTQDHLGKLLNVKRAAISKYENGKVPLTDEILIKLSKIFDVSCDYILG 153 Query: 73 ---------------FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F + + + E ++ + D L N+ Sbjct: 154 VSNKRNDSKVENKKSFMEKIEDLSPESKEELEKYIELLKLKDSLDKNK 201 >gi|111024214|ref|YP_707186.1| DNA-binding protein [Rhodococcus jostii RHA1] gi|110823744|gb|ABG99028.1| possible DNA-binding protein [Rhodococcus jostii RHA1] Length = 184 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 4/110 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R GMS ++ G+ + + E G L + L+ +S Sbjct: 9 YIGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVQMSQL 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D I ++E + + L R+ + L Sbjct: 69 LDPPRPRVQVIRADEGPELTSDRSDYRATLVAS----SPPSARRDLYRLA 114 >gi|91216784|ref|ZP_01253748.1| hypothetical protein P700755_04602 [Psychroflexus torquis ATCC 700755] gi|91184945|gb|EAS71324.1| hypothetical protein P700755_04602 [Psychroflexus torquis ATCC 700755] Length = 351 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 V +RI+ R + G S KL + + +++ + KYEK + + +++ L + + Sbjct: 5 VARRIKSARTLAGFSLRKLSDKMNGLVSYNAILKYEKAQMMPDSKVMLQLAKALNVKVDY 64 Query: 73 FF 74 FF Sbjct: 65 FF 66 >gi|114049377|ref|YP_739927.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890819|gb|ABI44870.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 107 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 9/84 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R G +Q +LG +G+ ++ YEKG + L+ ++ L P+++ Sbjct: 8 NRLKQARKQAGYTQMQLGVMIGMDEGSASGRMNHYEKGRHTPDIRTLKKMANALGVPLNY 67 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 FF DIS+E + +D +S Sbjct: 68 FF-----CEDDISAELSIQIDRLS 86 >gi|229113235|ref|ZP_04242730.1| hypothetical protein bcere0018_54440 [Bacillus cereus Rock1-15] gi|228670261|gb|EEL25609.1| hypothetical protein bcere0018_54440 [Bacillus cereus Rock1-15] Length = 60 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R+ L MSQE L +G+ + + E G IS+VLE+PI F Sbjct: 1 MKEYRVKLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDISKVLEAPIETLF 56 >gi|212638622|ref|YP_002315142.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560102|gb|ACJ33157.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 74 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ +R+ G++Q+++ + +GI+ E G S + I++ L+ + FFD Sbjct: 5 LKKKRLDTGLTQKEIAKLVGISRSTYAMIENGERNPSVSVAKRIADALKFDWTIFFDD 62 >gi|134096404|ref|YP_001101479.1| hypothetical protein HEAR3251 [Herminiimonas arsenicoxydans] gi|133740307|emb|CAL63358.1| Conserved hypothetical protein; putative cupin domain [Herminiimonas arsenicoxydans] Length = 198 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 8/102 (7%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P ++G R+R R++ G++ +L + + + K E+G + L ++ Sbjct: 16 KKSPT---ASLGLRLRHARLVAGLTLLQLAQKAACSESLISKIERGSATPSLAMLHRLAM 72 Query: 65 VLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 LE+ IS + P + E V+ G+ L R Sbjct: 73 ALETNISSLMSEDGPATGPILRKGERPVI----KAGGISLER 110 >gi|49185356|ref|YP_028608.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49477744|ref|YP_036632.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65319812|ref|ZP_00392771.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|229122064|ref|ZP_04251280.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|49179283|gb|AAT54659.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49329300|gb|AAT59946.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228661407|gb|EEL17031.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] Length = 69 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RI + R G +QE+L + +G++ Q + EK I+ V E PI+ FD Sbjct: 7 NRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDVFD 65 >gi|302876028|ref|YP_003844661.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307686745|ref|ZP_07629191.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578885|gb|ADL52897.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 345 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R ++QE++ L IT V K+E G++ + L ++ VL+ ++ Sbjct: 1 MRIGEVIRNYRKKENLTQEQVANYLNITAPAVNKWESGMSYPDITLLAPLARVLKIDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + ++ +G N+ F + D Sbjct: 61 LVAFDDELTDAEVKILTKGIGETASKEGF--NKAFEKASD 98 >gi|229164299|ref|ZP_04292231.1| hypothetical protein bcere0009_50590 [Bacillus cereus R309803] gi|228619182|gb|EEK76076.1| hypothetical protein bcere0009_50590 [Bacillus cereus R309803] Length = 285 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRAMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|261346592|ref|ZP_05974236.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282565296|gb|EFB70831.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 114 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 40/83 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG +R R+ ++ E+LG+ L I+ QQV +YE+G+ + L + +L S Sbjct: 10 KEVGLFLRDARVNSSLTGEQLGKMLHISQQQVSRYERGITSISIENLDALLNMLGKDWSE 69 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 FF SD +E +F+ Sbjct: 70 FFFKVIANYSDEIAEIKRQDNFL 92 >gi|197287313|ref|YP_002153185.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194684800|emb|CAR46871.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 85 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VGKRI+ RR L +S K+ LG+T Q K E G ++ L I+ +L+ Sbjct: 3 INTVVGKRIQNRRKELNISSSKIALQLGMTEQYYLKLENGYTKITVDELICIAIILKVSP 62 >gi|163759848|ref|ZP_02166932.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43] gi|162282806|gb|EDQ33093.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43] Length = 205 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 3/97 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ +G R+R R+ G+ + + + + K E G + L I++VL IS Sbjct: 21 DVLIGARLRHMRIASGLKLKDVAAAADCSESMLSKVETGHVSPSINMLHRITKVLNVNIS 80 Query: 72 FFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F + + + ++ GL L R Sbjct: 81 GLFAPVEETSRFIQRQGTRSVLSESYMRHGPGLALER 117 >gi|331702621|ref|YP_004399580.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129964|gb|AEB74517.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 201 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 40/93 (43%), Gaps = 11/93 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R++ R+ LG++Q+++ + + ++ Q + +E + L +S++ + Sbjct: 1 MRFGARLKTERIELGLTQKQVADTMNVSRQTISSWETENSYPDIDSLIQLSDLFHISLDV 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 E+ + +++ + L+ R Sbjct: 61 LL-----------KEDVGMKEYLKKKEALEWIR 82 >gi|307322306|ref|ZP_07601670.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306892049|gb|EFN22871.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 161 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE-S 68 +D + ++ R G+S+ L LG++ +YE+G R+ RL H+ E++ Sbjct: 36 MDEKISAWLKKTREANGISRADLAHLLGLSVSVYGRYERGSEARLSIPRLIHLCEIMGFM 95 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 P+ FD++P + E + L L + Q+ +R +I L+R + Sbjct: 96 PLDVIFDIAPHLWGKTLEEAEDR---------LTLMKLVEQLPQDTMRD-LIRLLRRMTP 145 Query: 129 SE 130 E Sbjct: 146 GE 147 >gi|294813544|ref|ZP_06772187.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|326442049|ref|ZP_08216783.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326143|gb|EFG07786.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R++ R G++ L E GI+ + + E G R L IS+ + P+ Sbjct: 41 VGPRLKRLRAERGITLAALAETTGISKSTLSRLESGGRRPSLELLLPISQAYQVPLD 97 >gi|225851327|ref|YP_002731561.1| transcriptional regulator, xre family [Persephonella marina EX-H1] gi|225645748|gb|ACO03934.1| transcriptional regulator, xre family [Persephonella marina EX-H1] Length = 159 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+RI+ R +LG+SQ + E +G + + VQ +E S L+ IS+ + + Sbjct: 3 NIGQRIKQLRKMLGLSQREFAEKIGKSLRAVQNWEYEQRTPDESTLRLISQTFGVNLDWL 62 >gi|148548690|ref|YP_001268792.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512748|gb|ABQ79608.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 104 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R + G++Q +L E G + + ++E + ++VL FF Sbjct: 6 LGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETNTYTPSIDAIMAFAQVLGVKPKDFF 65 Query: 75 DVSPTVCSDIS 85 + Sbjct: 66 AEPDDEEEQRA 76 >gi|313499651|gb|ADR61017.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 187 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + V +V +R R G+SQ L E G++ + + E G V + L Sbjct: 1 MHKDSSHRASVLQHVSLNVRSLRNAAGLSQAALAERSGVSRRMLVAIEAGEKNVSLTTLD 60 Query: 61 HISEVLES 68 I+E L Sbjct: 61 LIAEALGV 68 >gi|269139111|ref|YP_003295812.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] gi|267984772|gb|ACY84601.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] Length = 194 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD ++ + + R G + +L + G++ + K E+G + A+ L ++ + + Sbjct: 10 VDSDIARLLLKHRKTRGWTVAELAQRSGVSQAMISKVERGTSSPSATILSRLASAMNITL 69 Query: 71 SFFF 74 S FF Sbjct: 70 STFF 73 >gi|253574698|ref|ZP_04852038.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845744|gb|EES73752.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 129 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 39/103 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V VGK +R R + G++QE+L E + + E+G V L I++ L+ Sbjct: 22 DVAKQVGKNVRYYRKLKGLTQEQLAESTETYGSYIGRLERGEQNVQLETLHKIADALQIS 81 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + F + ++ + + R + + + Sbjct: 82 VYALFRNPGYDELQDQTWIWQIVQLLQEQPAEEQARAYRVLKE 124 >gi|242242403|ref|ZP_04796848.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242234110|gb|EES36422.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|319401579|gb|EFV89789.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] Length = 179 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I ++QE+L E ++ + + E ++ EVL + S Sbjct: 1 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S E + D Sbjct: 61 FFKESSDEKVLYKKNEQTIYD 81 >gi|210623634|ref|ZP_03293960.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] gi|210153504|gb|EEA84510.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] Length = 181 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ ++QE+L ++ + + E + + L I E+L + + Sbjct: 3 MEIGKKIKRLRIEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLKE 62 Query: 73 FFDVSPTV 80 FF+ + + Sbjct: 63 FFNDTESE 70 >gi|153816388|ref|ZP_01969056.1| hypothetical protein RUMTOR_02640 [Ruminococcus torques ATCC 27756] gi|317500743|ref|ZP_07958960.1| hypothetical protein HMPREF1026_00903 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089779|ref|ZP_08338673.1| hypothetical protein HMPREF1025_02256 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846276|gb|EDK23194.1| hypothetical protein RUMTOR_02640 [Ruminococcus torques ATCC 27756] gi|316897836|gb|EFV19890.1| hypothetical protein HMPREF1026_00903 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403662|gb|EGG83217.1| hypothetical protein HMPREF1025_02256 [Lachnospiraceae bacterium 3_1_46FAA] Length = 245 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +IR RR L MS+ +L E + +T + YE G++ + LE ++F++ Sbjct: 6 NKIRKRRQELNMSRVQLAEAVQVTPSAIANYENGISYPKPDIFVALMITLEVDANYFYE 64 >gi|77163705|ref|YP_342230.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254435082|ref|ZP_05048589.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] gi|76882019|gb|ABA56700.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] gi|207088193|gb|EDZ65465.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] Length = 86 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K VD+++G+ +R+ R + +SQ +L E GI + E+ R+G R + Sbjct: 1 MSEYRKAGKRVDVSIGESVRILRELQELSQNELSEMTGIPQSTISAIERDRIRLGVERAK 60 Query: 61 HISEVLESPIS 71 ++ L + Sbjct: 61 VLARALRCHPA 71 >gi|330468614|ref|YP_004406357.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328811585|gb|AEB45757.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 401 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRL 59 M G ++P +G+R+ RM M+Q+ L + LG + V K E+G R+ S + Sbjct: 1 MTGRSEVP------IGRRVAQWRMRRRMTQQCLADRLGKSKSWVDKVERGARRLDRFSVI 54 Query: 60 QHISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 Q I+EVL + P D+ + V ++ + Q+ ++R++ Sbjct: 55 QAIAEVLRIDPAVLLGQHPPPAGGDVRDGFDGVRAALARYGVFE--ASARQVPVAELRRR 112 Query: 119 I 119 + Sbjct: 113 V 113 >gi|303239261|ref|ZP_07325790.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593306|gb|EFL63025.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 125 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 9/123 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFD 75 RIR R LG +QE+LG+ +G++ + V YE L ++++ + I + Sbjct: 3 NRIRELRKELGFTQEELGKMIGLSERSVGSYETSDRDPDTDTLNKLAQIFDCTIDYMLMR 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKI-----IELVRSIVSS 129 + + + PD L ++ R ++ +VR+++ E+ R + Sbjct: 63 SNTRKTEEKKEMAEAEEMYRVDPDFLIEMCRA--KVLPDEVRKRLREYAAFEMERFLKEK 120 Query: 130 EKK 132 + K Sbjct: 121 DSK 123 >gi|302382805|ref|YP_003818628.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193433|gb|ADL01005.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 475 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 59/128 (46%), Gaps = 14/128 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R G++Q + LG++ + E+ V A L +++ + + Sbjct: 9 LFLGARVKRLRRDRGLTQTAMAGDLGVSPSYLNHIERNQRPVSAQLLLRLADAYDVDLR- 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--DGLQLNR-YFIQIDD--VKVRQKIIELVRSIV 127 T+ ++ E ++ + ++ P GL++ R +Q+ D + I+ L R+ Sbjct: 68 ------TLGQTGAAGEADLAEVLADPLFKGLEVPRHELVQLVDDAPGAAEAIVRLYRAF- 120 Query: 128 SSEKKYRT 135 SE++ +T Sbjct: 121 -SEQRDKT 127 >gi|238852906|ref|ZP_04643308.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] gi|238834467|gb|EEQ26702.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] Length = 266 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 10/84 (11%) Query: 18 RIRLRRMILGMSQEKLG------ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R++ R +G +QE+L + L I+ + KYE GVN L+ +S+ LE Sbjct: 5 RLKSIRNKMGFTQEELANYLQEVKHLKISRGTIAKYESGVNFPSKRTLKALSDALEVSED 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFI 95 F E ++DF+ Sbjct: 65 FL----AGKGLQTEDIEEVLLDFL 84 >gi|258515819|ref|YP_003192041.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779524|gb|ACV63418.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 364 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I +R +QE+L +G++ V K+E G L I+ L + + Sbjct: 3 LNIGEVITAKRKEKLWTQEQLANAVGVSTPAVSKWETGTTYPDIMLLSPIARALNTTVDK 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + + + +G F Q Sbjct: 63 LLSYQNELSDEEVDKVTKDAMHVYESEGFDAGWSFCQ 99 >gi|241664279|ref|YP_002982639.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240866306|gb|ACS63967.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 117 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I RM ++QE+L E LG+ + + ++E+G RL +++V P+ Sbjct: 14 LGKAIARERMARELTQEQLAELLGVEQETISRFERGSTLPPLPRLIQLADVFNVPLESLL 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + +D + + + ++ + DG R Sbjct: 74 RTTTGRPADEAVDISKMLAKL-DGDGRDFVR 103 >gi|59801396|ref|YP_208108.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|239998753|ref|ZP_04718677.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae 35/02] gi|240014330|ref|ZP_04721243.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240016763|ref|ZP_04723303.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|240080961|ref|ZP_04725504.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA19] gi|240112680|ref|ZP_04727170.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae MS11] gi|240115427|ref|ZP_04729489.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID18] gi|240117722|ref|ZP_04731784.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240121893|ref|ZP_04734855.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|240123275|ref|ZP_04736231.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID332] gi|240125529|ref|ZP_04738415.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae SK-92-679] gi|254493540|ref|ZP_05106711.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|260440761|ref|ZP_05794577.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae DGI2] gi|268594599|ref|ZP_06128766.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268597075|ref|ZP_06131242.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268598746|ref|ZP_06132913.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268601105|ref|ZP_06135272.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268603423|ref|ZP_06137590.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268681903|ref|ZP_06148765.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268684119|ref|ZP_06150981.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|291044074|ref|ZP_06569790.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293399253|ref|ZP_06643418.1| phage repressor [Neisseria gonorrhoeae F62] gi|59718291|gb|AAW89696.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|226512580|gb|EEH61925.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|268547988|gb|EEZ43406.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268550863|gb|EEZ45882.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268582877|gb|EEZ47553.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268585236|gb|EEZ49912.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268587554|gb|EEZ52230.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268622187|gb|EEZ54587.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268624403|gb|EEZ56803.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|291012537|gb|EFE04526.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291610667|gb|EFF39777.1| phage repressor [Neisseria gonorrhoeae F62] Length = 126 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R+ LG++Q + E G + + K+E+G NR + +L S++ I + Sbjct: 8 GKRLKEERIKLGLNQAEAAEKCGFSREMWGKWERGENRPSSEKLFSFSKI-GIDIDYVMH 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + SE + + +L F Q+ R+++ + + EKK +T Sbjct: 67 GRRGETAAMPSES-------LSAEEKELLALFRQLGSGS-RKELADYAAFKLVVEKKAQT 118 Query: 136 IE 137 Sbjct: 119 AL 120 >gi|331082825|ref|ZP_08331947.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400154|gb|EGG79803.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] Length = 91 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I R G+SQ+ ++ Q V +E G + + IS+ + + Sbjct: 1 MNIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 I +E+ D + Sbjct: 61 LLRNDVQSEEKIDNEKKVKRDIL 83 >gi|322386543|ref|ZP_08060170.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269462|gb|EFX52395.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQE+L E + ++ Q + K+E G ++ +S++ + + D Sbjct: 7 KLFELRKEKGWSQERLAEQISVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 66 Query: 76 VSPTVCSDISSEEN 89 I SE+ Sbjct: 67 SDKPEIKPILSEDE 80 >gi|293374899|ref|ZP_06621200.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325843168|ref|ZP_08167854.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|292646502|gb|EFF64511.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325489412|gb|EGC91782.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 194 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VGK + R M+Q+++ E + I+ + + K+E+G+ S L +S++ I Sbjct: 4 VKVGKLLYDLRKEKNMTQKQVAELMNISDKTISKWERGLGCPDVSLLPELSQIFGVSID 62 >gi|290954828|ref|YP_003486010.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260644354|emb|CBG67439.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 204 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 V + +RL R G+S +L G+ Q + E+G L I+ L P++ Sbjct: 9 VARNVRLLREQRGLSLARLAREAGLAKQTLSNLEQGTGNPTVDTLFSIATALGVPVT 65 >gi|225378570|ref|ZP_03755791.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans DSM 16841] gi|225209584|gb|EEG91938.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans DSM 16841] Length = 150 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R ++QE+L E L ++ Q + K+E G ++ +S+V + + + Sbjct: 5 EKLITLRKSRELTQEQLAEQLNVSRQSISKWESGQVIPEVEKIVELSKVFDVTVDYLLKP 64 Query: 77 SPTVCSDISSE 87 S + +E Sbjct: 65 SEIDELSVKTE 75 >gi|182440719|ref|YP_001828438.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469235|dbj|BAG23755.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 205 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ + Sbjct: 10 LDSLVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSL 69 Query: 71 SFFFDVSPT 79 + + Sbjct: 70 DQLVETASD 78 >gi|161789249|ref|YP_001595597.1| hypothetical protein BMSA_0010 [Vibrio sp. 23023] gi|161761374|gb|ABX77020.1| H-T-H motif hypothetical protein [Vibrio sp. 23023] Length = 207 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 32/56 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V + ++ +R+ G++Q+ L + +G++ V K+E G ++ + +SE+L Sbjct: 1 MYVSQILKKKRVEKGLTQQDLADAIGVSAVAVSKWELGQSKPRKKFHEKLSEILGV 56 >gi|266624214|ref|ZP_06117149.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288863957|gb|EFC96255.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 94 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G ++ R+ M+Q +L + LG+T + YE G+ L HI+++ + + Sbjct: 2 VDFGNTLKTLRLQENMTQAQLSQKLGLTKSVISAYETGLRLPSYDVLIHIAQIFKVSTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 V D+S + L L + Sbjct: 62 LLGVEHKDSLDLSGLTQPEKSAL-----LMLIKA 90 >gi|239977932|ref|ZP_04700456.1| putative transcriptional regulator [Streptomyces albus J1074] Length = 211 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 5/93 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + L GI+ + + E G R L I+ + P+ Sbjct: 27 VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLELLLPIAAAHDVPLDRLV 86 Query: 75 DVSPTVCSDISSEE-----NNVMDFISTPDGLQ 102 P + E V+ P GLQ Sbjct: 87 GAPPAGDPRVRLEPIEQGNRTVIPLSRRPGGLQ 119 >gi|222086392|ref|YP_002544926.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221723840|gb|ACM26996.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD +G RIR+ R G S +L E ++ + K E+G + A+ L +S Sbjct: 17 DSVDKRIGTRIRIERESRGWSLTELAERSAVSRAMIHKIERGDSSPTATLLGKLSGAFGL 76 Query: 69 PIS 71 +S Sbjct: 77 SMS 79 >gi|29171585|ref|NP_808631.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856078|gb|AAO59134.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] gi|320326981|gb|EFW82998.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882666|gb|EGH16815.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330945149|gb|EGH46863.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 117 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS + Sbjct: 7 FVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 66 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 DV T + + + +P+ L+ F+ Sbjct: 67 LPGGQDVLRTRLISLRQAIADKAIEVDSPESLEEILAFM 105 >gi|47564475|ref|ZP_00235520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558627|gb|EAL16950.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 67 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I++ L S I F F+ Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDGIFIFE 65 Query: 76 VS 77 Sbjct: 66 DE 67 >gi|332982308|ref|YP_004463749.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332699986|gb|AEE96927.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 126 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 16/108 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R M+QE+L LGI+ + YE + + +++ + + Sbjct: 4 ERLVELRKERKMTQEELANVLGISRSALSLYETDKRQPDFQTICRLADFFNVSVDYLLGR 63 Query: 77 SPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + C + + N DFI + D +R+ + EL Sbjct: 64 TDDRCGVARTTYKAGNKADFI--------------LRDPDIREALDEL 97 >gi|332981126|ref|YP_004462567.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698804|gb|AEE95745.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 121 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R G++ LG+ ++ + E G + L +++ L I+ Sbjct: 4 IGAKLKSIRKQRGLTLRALGKAANVSHSFIADIESGRSNPSLDTLDALAKALNVSITDII 63 Query: 75 DVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + + + + + + L L + RQ I+E V++ Sbjct: 64 RDTDYENRQEAIDLAEAILEENVMFDGEPLSLT--------PEERQSILEFVKT 109 >gi|319787536|ref|YP_004147011.1| hypothetical protein Psesu_1943 [Pseudoxanthomonas suwonensis 11-1] gi|317466048|gb|ADV27780.1| helix-turn-helix domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 125 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 3/115 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPIS 71 + + RIR+ R +SQE L LG++ V +E V + A +RL+ +++ Sbjct: 1 MQLSMRIRIARQRAKLSQEALARMLGVSRGAVANWECAVGSLPATTRLERLAQATGVCFE 60 Query: 72 FFFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + P ++ + ++I P +L + + ++ +++ ++ L + Sbjct: 61 WLATGRGPITYTEPVPRPSTEGEWIDDPIERRLVQAY-RVASRPLQRMLLRLAEA 114 >gi|295106173|emb|CBL03716.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 384 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R G++QE L E LG++ Q V K+E G N +L + ++ + + S V Sbjct: 9 YLRQHYGVTQEGLAEQLGVSRQTVSKWEAGTNYPEMDKLLALCDLFHTNLDDLMRGSVHV 68 Query: 81 CSDISSE 87 + +E Sbjct: 69 ANKGDTE 75 >gi|293568750|ref|ZP_06680064.1| transcriptional regulator, putative [Enterococcus faecium E1071] gi|291588467|gb|EFF20301.1| transcriptional regulator, putative [Enterococcus faecium E1071] Length = 270 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 5/101 (4%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RIR R L +S EK G+ +G + V +E+G+N L I+EV Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEVGHV 62 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL---QLNRY 106 + + + +GL +LNR Sbjct: 63 TNEYLLYGDQENQYILEMLQKKAGKLDPEIEGLIVDELNRA 103 >gi|169631439|ref|YP_001705088.1| putative DNA-binding protein [Mycobacterium abscessus ATCC 19977] gi|169243406|emb|CAM64434.1| Putative DNA-binding protein [Mycobacterium abscessus] Length = 191 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + V + +R R +S L G++ Q V K E+GV L + E L+ P Sbjct: 3 DHNTLVARNVRRYRQERALSLGDLARRSGLSKQTVSKIEQGVGNPTVETLALLGEALQVP 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 T + E+ +D + + L L+ + VR ++ L R+ + Sbjct: 63 PQRLLTEWGTPVFVQRASEDGWVDKGARSERL-LDEIY---GSGYVRNLVVRLERTAQAG 118 Query: 130 EK 131 E+ Sbjct: 119 EE 120 >gi|148544266|ref|YP_001271636.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531300|gb|ABQ83299.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] Length = 264 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Query: 4 NKKIPNPVDI-------NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 N K P +D N G I + R M+Q++LG +G+T + + +YE G+ + Sbjct: 68 NSKAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIPI 127 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 L+ +SE L S S+ V+ +++ DFI + D +L + Sbjct: 128 ETLKKLSEALGSEASYLLGVNGKYL------PHSMNDFILSLDDHELLKS 171 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R++ R ++Q++L + L ++ + YE+ +LQ I+ + ++ Sbjct: 2 NRLKFLRRKKHLTQQQLSKELKKRNIKVSVALISSYEQEKIPFNKEKLQKIANYFDVSVN 61 Query: 72 FF 73 + Sbjct: 62 YL 63 >gi|325848985|ref|ZP_08170495.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480629|gb|EGC83691.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 67 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + +IR R G+SQ KL + +G+ + + YE I +VL+ I Sbjct: 1 MEVEINNKIREFRKEKGLSQHKLAKMVGLKRRSIMAYENNTISPSLETAYKICKVLDKDI 60 Query: 71 SFFF 74 F Sbjct: 61 KEVF 64 >gi|228982712|ref|ZP_04142971.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis Bt407] gi|228776895|gb|EEM25203.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis Bt407] Length = 133 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 KR+RL R G++QE+L + + YE G + L + +VL F Sbjct: 31 KRLRLARKWSGLTQEELAIKVNTKKTTISNYETGYSTPSIEMLDLLCDVLNVSSDFL 87 >gi|227823807|ref|YP_002827780.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] gi|227342809|gb|ACP27027.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] Length = 220 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 16/106 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R++ +SQ +L + G+T + E + L+ I + PI Sbjct: 41 VDIGNRLRHVRLMHNLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILD--GIPIGL 98 Query: 73 --FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR---YFIQIDDV 113 FF P E F + + +++ + + QI D Sbjct: 99 AEFFSFEP---------ERPRKAFYAAEELVEIGKGPISYRQIGDN 135 >gi|218529602|ref|YP_002420418.1| phage repressor [Methylobacterium chloromethanicum CM4] gi|218521905|gb|ACK82490.1| putative phage repressor [Methylobacterium chloromethanicum CM4] Length = 244 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP +G IR R G++Q + L I+ V ++E G RL ++ +L Sbjct: 1 MANP----LGPVIREARKARGLTQGDIASALKISRPAVGQWESGDTGPDRDRLPALARLL 56 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 D+ ++ + + +S + L Sbjct: 57 RV------DLGALTNGELVLLDQEAAEGVSDSEAL 85 >gi|86140912|ref|ZP_01059471.1| hypothetical protein MED217_17210 [Leeuwenhoekiella blandensis MED217] gi|85832854|gb|EAQ51303.1| hypothetical protein MED217_17210 [Leeuwenhoekiella blandensis MED217] Length = 135 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 17/137 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---I 70 ++G++I R + GM QE L LGI+ Q V E+ + + S+L+ +++VL I Sbjct: 8 HIGRKIARIRELRGMKQEALAHELGISQQSVSHMEQSES-LEDSKLEEVAKVLGVTKEGI 66 Query: 71 SFFFDVS---PTVCSDISSEENNVMDFISTPDGLQ-LNRYFIQIDDVKVRQKIIELVRSI 126 F + + + + + +++ + T + L L + ++ K L + Sbjct: 67 ENFSEEAVFNIIGNTVTNHDNSSLFAYQPTFNPLDKLIEAY---EENKK------LYERL 117 Query: 127 VSSEKKYRTIEEECMVE 143 V +EK + EE + + Sbjct: 118 VQAEKDKVSYLEELLTK 134 >gi|296131950|ref|YP_003639197.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296030528|gb|ADG81296.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 129 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 15/115 (13%) Query: 6 KIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K + +D +G+RIR R L +S+EK E +G++ V + E+G ++ L I+ Sbjct: 2 KKKSEIDNKAIGQRIREEREKLELSREKFAEIIGLSDYYVGQLERGERQMSLRVLFKIAR 61 Query: 65 VLESPISFF---------FDVSPTVCSDISSEENNVMDF-----ISTPDGLQLNR 105 L + + + V + + E+N + +P+ L+L + Sbjct: 62 CLHVSLDYLIFGKTVHDTYQVQDARNTYKAVEDNKYKEINILLDKCSPEELELVK 116 >gi|289422954|ref|ZP_06424776.1| helix-turn-helix domain protein [Peptostreptococcus anaerobius 653-L] gi|289156634|gb|EFD05277.1| helix-turn-helix domain protein [Peptostreptococcus anaerobius 653-L] Length = 344 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 ++I R +G SQE+L L ++ Q V K+E GV+ +++ +SEV + + Sbjct: 5 EKIMSLRKKMGWSQEELANELNVSRQSVSKWETGVSIPDMAKIVMMSEVFGVTTDYLLKE 64 Query: 76 VSPTVCSDISSEENNV 91 + +++S + Sbjct: 65 GANDEILELNSSSQEI 80 >gi|257063413|ref|YP_003143085.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791066|gb|ACV21736.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 106 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ + R G++QE+L + ++ + K E G RL +++ L+ IS+F Sbjct: 28 VGRAVAKARETNGLTQEQLAHMIDMSDHSFISKIENGKRIPSMQRLLTLADALDVEISYF 87 >gi|238793272|ref|ZP_04636899.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] gi|238727440|gb|EEQ18967.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] Length = 193 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R LG++ +L + GI + + E G L ++ L+ P+S Sbjct: 23 IRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVS 75 >gi|222080797|ref|YP_002542525.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221725476|gb|ACM28565.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 189 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +V +R R G+SQ L E GI+ + + E G + S L ++ L Sbjct: 15 AHVSGNLRRLRKSAGLSQTALAEASGISRRMIIAVEAGDANISLSSLDKLAAALGVD 71 >gi|167749275|ref|ZP_02421402.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|167657768|gb|EDS01898.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|291556859|emb|CBL33976.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 122 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +RI+ R G SQ ++ E LG+T Q YE G + L I+E + Sbjct: 14 ERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTD 66 >gi|78043201|ref|YP_360517.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995316|gb|ABB14215.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+R+R R ++Q +L + L I + YE + L +S I F Sbjct: 1 MNFGQRLRQLRTERDLTQAELAKLLSIGESTISFYESNKRQPDFDTLIKLSNFFNVSIDF 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|325263097|ref|ZP_08129832.1| DNA-binding protein [Clostridium sp. D5] gi|324031490|gb|EGB92770.1| DNA-binding protein [Clostridium sp. D5] Length = 157 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R ++QE+L E L ++ Q + K+E G +L +S V + + Sbjct: 1 MEISEKILQLRKANNLTQEELAEKLNVSRQSISKWESGQTIPELEKLISLSSVFQVTTDY 60 Query: 73 FFDVSPTVCSDISSE 87 S I +E Sbjct: 61 LLKPSELDELSIKTE 75 >gi|319936355|ref|ZP_08010771.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808470|gb|EFW05022.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 176 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQE+L + L ++ Q V K+E+G+ +L +S L + + Sbjct: 6 NLKQMRKKKGISQEELAQLLNVSRQAVSKWEQGIGYPEVEKLLILSSQLNVSLDSLM--A 63 Query: 78 PTVCSDISSEEN 89 + ++ +S++N Sbjct: 64 DEIINNNTSQDN 75 >gi|312905525|ref|ZP_07764639.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|310631254|gb|EFQ14537.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 418 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 9 NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N V+ + +G+ IR+ R G +Q L E +GI+ + K EKG R+ A +L + + L+ Sbjct: 2 NQVNQHDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRRLSAEKLNLVLDSLQ 61 Query: 68 ---SPIS 71 P++ Sbjct: 62 EEIVPVN 68 >gi|307706761|ref|ZP_07643566.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|307617846|gb|EFN97008.1| helix-turn-helix family protein [Streptococcus mitis SK321] Length = 62 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ RR L MSQ +L E GI Q Q+ + E G GA L +S+ L+ I FF Sbjct: 8 RLKNRRKELKMSQRELAE--GICKQGQISRLENGEFTPGADFLYALSKKLKVSIDFF 62 >gi|291558273|emb|CBL35390.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 110 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +Q+++ + LG + Q KYE G + R +++ + + + Sbjct: 5 QRLRDLREDADKTQQEIADYLGTSAQHYGKYESGKAEIPLERAVRLAKYYNVSLDYIAGI 64 Query: 77 SPTVCSDISSEENNVMDFISTP 98 S + S + + +S Sbjct: 65 SSSRHPLTSDNSLSPIGILSDK 86 >gi|261366533|ref|ZP_05979416.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] gi|282571346|gb|EFB76881.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] Length = 124 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 17/128 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R + ++Q++L + ++ + VQ E+G L+ +VL + Sbjct: 5 KELGRRIQKARKVKKLTQQELADLSHVSLKHVQSCERGEKNPSFEVLRAFGKVLNLSLDS 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ D+ +E + D R R+ ++ R++ E K Sbjct: 65 LMNL------DLPEDEQSAND----------MRQLYLSCPPAARKALLNSARALA-DELK 107 Query: 133 YRTIEEEC 140 T +EC Sbjct: 108 EMTQADEC 115 >gi|254439667|ref|ZP_05053161.1| Cupin domain protein [Octadecabacter antarcticus 307] gi|198255113|gb|EDY79427.1| Cupin domain protein [Octadecabacter antarcticus 307] Length = 189 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P P +G IR R G++ LGE LG + + + E+ + S L++I+ L Sbjct: 4 APPPESCTLGADIRALRKARGLTLSGLGETLGRSVGWLSQVERDKSEPSISDLRYIASAL 63 Query: 67 ESPISFFF 74 + +S F Sbjct: 64 DVSVSSLF 71 >gi|330825988|ref|YP_004389291.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329311360|gb|AEB85775.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 117 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 16/124 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV K P+ +G +I R +Q L E +G+ + + + E+G L+ Sbjct: 1 MVKKKHPGKPLAQRLGTQIATLRKTKEWTQADLAERIGVEPETISRVERGATTPSLQTLE 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 IS L I ++ + + + +++ +L D R ++ Sbjct: 61 KISHCLRVRIG---ELLAETSAQPDDQATKIAAWLA-----EL--------DEPHRSFVV 104 Query: 121 ELVR 124 +LV+ Sbjct: 105 DLVK 108 >gi|307608926|emb|CBW98330.1| putative repressor [Legionella pneumophila 130b] Length = 227 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ + LGE G+ ++ +E+GV G ++ ++ L+ Sbjct: 6 IKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLARALDVS 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ +S + + + ++ + + Sbjct: 66 PAYLMCLSDELQFKEAKNPSQLIPLLDYRQACE 98 >gi|308071596|ref|YP_003873201.1| transcriptional regulator sinR [Paenibacillus polymyxa E681] gi|305860875|gb|ADM72663.1| HTH-type transcriptional regulator sinR [Paenibacillus polymyxa E681] Length = 114 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R G++Q++L E G+ + E+G L+ + L IS Sbjct: 8 VGERIRTIRKAKGLTQQQLAELSGLDDAYIGSVERGERNFSIDTLEKVLTALNVSISELM 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + D + + + +F++ L Sbjct: 68 FSKEHMTKDETIRQEAIDEFVALTSTL 94 >gi|239995180|ref|ZP_04715704.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii ATCC 27126] Length = 187 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 36/93 (38%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P+ + ++ ++ R G+S +K + G++ + + E+G + + L Sbjct: 1 MTKANAQPSAISRSIAHHLQSVRKARGLSLDKTAQLTGVSKAMLGQIERGESSPTIATLW 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 I+ L S F T + ++ D Sbjct: 61 KIATGLACSFSSFLSGDETAPTSQHADNKFAND 93 >gi|163792697|ref|ZP_02186674.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] gi|159182402|gb|EDP66911.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] Length = 192 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++ E L G+T + K E G + L I++ + +++FF Sbjct: 5 IGPRLRQLRKRRGVTLETLAAGTGLTKGYLSKIETGKMVPPIATLSRIAQAIGCDMAYFF 64 Query: 75 DVSPTVCS 82 + Sbjct: 65 QSQQGADA 72 >gi|160893603|ref|ZP_02074387.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50] gi|156864588|gb|EDO58019.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50] Length = 145 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ +R LG+SQ++L E G+ + + YE G + ++L +++ LE + + Sbjct: 5 GAKVKEQRGNLGLSQKQLAEKAGMGIRTITSYELGERKPYQAQLYKLAKALEVSTEYLQN 64 Query: 76 VSPTVCSDISSEENNVMDF---ISTPDGLQL 103 + S V D T + L L Sbjct: 65 DNIEDPSYGLDRMEYVEDMRKNSGTREALDL 95 >gi|91225344|ref|ZP_01260512.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|91189983|gb|EAS76255.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] Length = 102 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 9/99 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLE 67 D + R++ R ++Q+ LG +G+ ++ YEKG + L+ ++E L+ Sbjct: 4 DNPIPARLKAARKKAKITQKDLGVKIGMEPSSASGRMNHYEKGRHVPDIGTLERMAEELD 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 P+++FF +++S+E +D +S + L + Sbjct: 64 VPLNYFF-----CRNELSAELACAIDKMSDEEKAALLKS 97 >gi|75674859|ref|YP_317280.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419729|gb|ABA03928.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 259 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 5/111 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK +R R+ G+S E+L + G++ + + E G + L I L P + Sbjct: 76 VIVGKNLRRIRLRQGLSLERLAKQSGVSRAMLGQIETGKSTPTIGLLWKICTSLTVPFAS 135 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY-FIQIDDVKVRQKIIEL 122 V + + + +S+ G +R F D + R + EL Sbjct: 136 LIAVGDPEGIIVLRRDGS--KLLSSNQGRFTSRALFP--FDSERRTEFYEL 182 >gi|19551615|ref|NP_599617.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 469 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 24/132 (18%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 2 GSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVDATFF-- 59 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-RQKIIE-------LVRSIV 127 D S V D + + I+ V Q++ E L R++V Sbjct: 60 ----SRDDDSRLLAEVQDVMLDRE----------INPANVELQELSEMVYNHPQLARAMV 105 Query: 128 SSEKKYRTIEEE 139 ++YR + ++ Sbjct: 106 EMHQRYRNVRDK 117 >gi|29374945|ref|NP_814098.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|257088816|ref|ZP_05583177.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|281416438|ref|YP_003347358.1| cI repressor protein [Enterococcus phage phiFL4A] gi|29342403|gb|AAO80169.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256997628|gb|EEU84148.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|270209614|gb|ACZ64153.1| cI repressor protein [Enterococcus phage phiFL4A] gi|315160614|gb|EFU04631.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0645] gi|315579460|gb|EFU91651.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] Length = 120 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 11/108 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ++L LG+ + + YE+GV V + L+ ISE+ + I + Sbjct: 7 RLKELRKNKKMSQQELATFLGMKRENISNYERGVITNVSSDTLEKISELFDVSIDYLLGK 66 Query: 77 SPTVCSDISSEENNVM-----DFISTPDGLQL----NRYFI-QIDDVK 114 S T S VM D +S+ +L R+F +I+++K Sbjct: 67 SDTSNQKNESMAKQVMMRMDTDGLSSKQVKELEDEMERFFSWRIEEIK 114 >gi|107027653|ref|YP_625164.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693636|ref|YP_839169.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737089|ref|YP_001778349.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105897027|gb|ABF80191.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651636|gb|ABK12276.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169819277|gb|ACA93859.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 192 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 11/130 (8%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV + D + +G +IR R L + + GI+ + + E+G+ + L Sbjct: 1 MVPPTENSRSADAVALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSL 60 Query: 60 QHISEVLESPISFFFDVSPTVCS----------DISSEENNVMDFISTPDGLQLNRYFIQ 109 I+ L + +F D S + N + +G QL ++ Sbjct: 61 AGIAHALGVTVQYFVDTPSEERSVCRGDQLRFFGFADSANLFARLTNVSEGRQLEAILVR 120 Query: 110 IDDVKVRQKI 119 + + R ++ Sbjct: 121 MPPGQKRSEV 130 >gi|320526956|ref|ZP_08028145.1| cupin domain protein [Solobacterium moorei F0204] gi|320132541|gb|EFW25082.1| cupin domain protein [Solobacterium moorei F0204] Length = 180 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G RI+ R+ ++ E+L +T + + E+ + L I+E L +S Sbjct: 2 IDIGHRIKQLRIKNDLTLEELASRTELTKGFLSQLERNLTSPSIQTLADIAEALGVDMSR 61 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + E+ + + Sbjct: 62 FFAEEHEEKIVFTPEDVFIDE 82 >gi|291546057|emb|CBL19165.1| Helix-turn-helix [Ruminococcus sp. SR1/5] Length = 81 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+ +GK +R R G+SQEKL L I KYE G + S L + ++ Sbjct: 8 DVYIGKNLRRLREKFGLSQEKLCAELQCRNCDIGRSTYAKYENGELNIRISVLMELKKIY 67 Query: 67 ESPISFFFDVSPT 79 FFD + Sbjct: 68 NCSYDEFFDDLDS 80 >gi|291008215|ref|ZP_06566188.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P + + +R R +G+S +L + GI + + E G L Sbjct: 16 MSTTESTPLEI---ISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLW 72 Query: 61 HISEVLESPISFFFD 75 ++ L P S D Sbjct: 73 ALAVALGVPFSRLVD 87 >gi|269794649|ref|YP_003314104.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter keddieii DSM 10542] gi|269096834|gb|ACZ21270.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter keddieii DSM 10542] Length = 509 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G IR R + G +Q L + +G + V + EKG + ++ ISE L+ Sbjct: 9 IGTLIRDARKLHGWTQAHLADKIGTSQSAVNRIEKGGQNLSLDTVRRISEALD 61 >gi|259418297|ref|ZP_05742215.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259345692|gb|EEW57536.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 190 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + D +G+R+R R G+SQ L + G+ + E G L+ I Sbjct: 2 NNTNADSEDYELGQRLRAVREQSGVSQRALAKKTGVPNSTISLIESGKMNPSVGALRRIL 61 Query: 64 EVLESPISF--FFDVSPTVC 81 + PIS FF P + Sbjct: 62 D--GVPISLSEFFAFEPELE 79 >gi|167768466|ref|ZP_02440519.1| hypothetical protein CLOSS21_03025 [Clostridium sp. SS2/1] gi|291086900|ref|ZP_06344824.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|167709990|gb|EDS20569.1| hypothetical protein CLOSS21_03025 [Clostridium sp. SS2/1] gi|291077343|gb|EFE14707.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 232 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 31 KLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 90 Query: 72 FFFDVSPTVCSDISSE 87 + + +DI+ + Sbjct: 91 WLKGETDEYETDITDK 106 >gi|167749537|ref|ZP_02421664.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] gi|167657461|gb|EDS01591.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] Length = 380 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+ ++ R+ ++QE+L + LG++ Q V ++E G + L I+ E + Sbjct: 16 LGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGSTYPDITLLPTIASYFEITLD 72 >gi|217960750|ref|YP_002339314.1| DNA-binding protein [Bacillus cereus AH187] gi|217064586|gb|ACJ78836.1| DNA-binding protein [Bacillus cereus AH187] Length = 67 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 RI+ R L M+QE L + +G+ + + EKG I++ L S I F F+ Sbjct: 6 RIKEYRAKLNMTQEDLAKNVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDEVFIFE 65 Query: 76 V 76 Sbjct: 66 D 66 >gi|163761211|ref|ZP_02168287.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea phototrophica DFL-43] gi|162281550|gb|EDQ31845.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea phototrophica DFL-43] Length = 203 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 6/96 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R G++ + L + GI+ + + E+ L ++ L + F Sbjct: 23 GERIREMRHKAGLTLQTLADQSGISVGFLSQVERDKATPSLGTLASVAAALGVDVDVFIS 82 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 D + E F+ LQ + +I Sbjct: 83 TPKPA--DSVTREGERPSFVLADSSLQ----YERIS 112 >gi|160896156|ref|YP_001561738.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361740|gb|ABX33353.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 104 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLES 68 ++G+RIR RR LGM+Q +L E GIT V + E G R + L ++ L++ Sbjct: 2 RHIGERIRARRAELGMTQGRLAEAAGITASAVSQIESGAIRTLKNDTLARVALALQT 58 >gi|89068976|ref|ZP_01156358.1| Predicted transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89045557|gb|EAR51621.1| Predicted transcriptional regulator [Oceanicola granulosus HTCC2516] Length = 439 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR+ G+ Q L + GI+ + E R+ L I+ VLE + Sbjct: 8 GSRIRARRLDRGLRQADLAQMAGISASYLNLIEHNRRRIAGRLLHEIARVLEIDPVVLSE 67 Query: 76 VSPTVCSD 83 + D Sbjct: 68 GAGGATVD 75 >gi|330966069|gb|EGH66329.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 189 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +V +R R +SQ L E G++ + + E G V + L ++E LE Sbjct: 10 PVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVV 69 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 S +E + + L R + Sbjct: 70 FSDLIQAPENRDHSRINELAWAGTIPGSK-AVLLARAIAR 108 >gi|319900779|ref|YP_004160507.1| transcriptional regulator [Bacteroides helcogenes P 36-108] gi|319415810|gb|ADV42921.1| transcriptional regulator [Bacteroides helcogenes P 36-108] Length = 191 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E L + G+ +QV++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKSLRESQSISMEDLAQRSGLAIEQVERIENNIDLPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D Sbjct: 67 DDQDENGP 74 >gi|317488752|ref|ZP_07947286.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] gi|316912122|gb|EFV33697.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] Length = 112 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +++ + +R+ R G SQE+L E LG++ Q V K+E+ + L Sbjct: 1 MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLI 60 Query: 61 HISEVLESP 69 ++++ Sbjct: 61 ALAKLYGVS 69 >gi|325675508|ref|ZP_08155192.1| DNA binding regulatory protein [Rhodococcus equi ATCC 33707] gi|325553479|gb|EGD23157.1| DNA binding regulatory protein [Rhodococcus equi ATCC 33707] Length = 241 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 10 PVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PVD N + + ++ R MS L + ++ Q + K E+GV + I+ L+ Sbjct: 43 PVDSNGLIARNVQRFRNERQMSMGDLAKRADLSKQTLSKIEQGVGNPTVETIDAIATALD 102 Query: 68 SPI 70 P+ Sbjct: 103 VPL 105 >gi|289551818|ref|YP_003472722.1| Transcriptional regulator, XRE family [Staphylococcus lugdunensis HKU09-01] gi|315660010|ref|ZP_07912868.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289181349|gb|ADC88594.1| Transcriptional regulator, XRE family [Staphylococcus lugdunensis HKU09-01] gi|315494911|gb|EFU83248.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 190 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG++++ R+ G SQE L E L ++ Q + +E + L + + + Sbjct: 2 INVGQQLKKYRIQQGYSQEVLAEKLYVSRQTISNWENNKSLPDIHNLLMMCSLFNVSLDD 61 Query: 73 FFDVS 77 Sbjct: 62 LVKGD 66 >gi|229156920|ref|ZP_04285001.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342] gi|228626410|gb|EEK83156.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342] Length = 374 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDE 63 Query: 73 FFDVSPTVCSD 83 +P + + Sbjct: 64 LISYTPQMEQE 74 >gi|209965957|ref|YP_002298872.1| hypothetical protein RC1_2685 [Rhodospirillum centenum SW] gi|209959423|gb|ACJ00060.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 480 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 30/149 (20%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +G ++R R L ++Q ++ + LGI+ + E + L Sbjct: 1 MTEKKAM-------LGHKVRRLRRDLKLTQAQMADELGISPSYLNLIESNQRPLTVPLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE-------------ENNVMDFISTPDGL-----Q 102 I ++ + +S F + T E ++ + + L Q Sbjct: 54 KIGQIYDVDLSTFAETDETRLVAGLKEVFADPLFETSDIKNQDMKELAAVAPTLGQAVVQ 113 Query: 103 LNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 L R + + RQ + L S+ +K Sbjct: 114 LYRAYR-----EARQDLSVLAESMADGDK 137 >gi|184153646|ref|YP_001841987.1| hypothetical protein LAR_0991 [Lactobacillus reuteri JCM 1112] gi|227364982|ref|ZP_03849023.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|325681705|ref|ZP_08161225.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri MM4-1A] gi|183224990|dbj|BAG25507.1| hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227069993|gb|EEI08375.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|324979017|gb|EGC15964.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri MM4-1A] Length = 266 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Query: 4 NKKIPNPVDI-------NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 N K P +D N G I + R M+Q++LG +G+T + + +YE G+ + Sbjct: 70 NSKAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIPI 129 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 L+ +SE L S S+ V+ +++ DFI + D +L + Sbjct: 130 ETLKKLSEALGSEASYLLGVNGKYL------PHSMNDFILSLDDHELLKS 173 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R++ R ++Q++L + L ++ + YE+ +LQ I+ + ++ Sbjct: 4 NRLKFLRRKKHLTQQQLSKELKKRNIKVSVALISSYEQEKIPFNKEKLQKIANYFDVSVN 63 Query: 72 FF 73 + Sbjct: 64 YL 65 >gi|154482433|ref|ZP_02024881.1| hypothetical protein EUBVEN_00100 [Eubacterium ventriosum ATCC 27560] gi|149736710|gb|EDM52596.1| hypothetical protein EUBVEN_00100 [Eubacterium ventriosum ATCC 27560] Length = 195 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R L +SQ++L E + ++ Q + +E + + L +SEV ++ I Sbjct: 1 MELGNQIKKYRSELQLSQDQLAEHIYVSRQTISNWENEKSYPDVNSLVLLSEVFKTSIDN 60 Query: 73 FFDVSPTVCSDISSEEN 89 + +E+ Sbjct: 61 LIKGDIENMKEKINEQE 77 >gi|53723158|ref|YP_112143.1| MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|134281916|ref|ZP_01768623.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|254264128|ref|ZP_04954993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|52213572|emb|CAH39625.1| putative MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|134246978|gb|EBA47065.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|254215130|gb|EET04515.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 193 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 15 VALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 74 Query: 73 FFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 F + S ++ F + P+G QL +++ + R ++ Sbjct: 75 FVETPSEERSVCRGDQLRFFSFADSANLFARLTNVPEGRQLEAILVRMPPGQKRSEV 131 >gi|54296142|ref|YP_122511.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris] gi|53749927|emb|CAH11312.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris] Length = 227 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ + LGE G+ ++ +E+GV G ++ ++ L+ Sbjct: 6 IKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLARALDVS 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ +S + + + ++ + + Sbjct: 66 PAYLMCLSDELQFKEAKNPSQLIPLLDYRQACE 98 >gi|332798162|ref|YP_004459661.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695897|gb|AEE90354.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 123 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIR R LG+S+E+ E +G++ + + E+G ++ L ++ L + + Sbjct: 8 IGKRIREEREKLGLSREEFAEIIGLSDYYIGQLERGERQMSMPTLIKVANCLHVSLDYL 66 >gi|319939025|ref|ZP_08013389.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV] gi|319812075|gb|EFW08341.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV] Length = 115 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 36/70 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIRL R+ GM+QE+L E + V K E V + L+ + + LE I F Sbjct: 15 YIGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEVDIETF 74 Query: 74 FDVSPTVCSD 83 FD+ P + Sbjct: 75 FDMVPDKEKE 84 >gi|309778211|ref|ZP_07673144.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914045|gb|EFP59852.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 135 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ GM+QE + E + ++ Q + +E + + +S + + Sbjct: 1 MEIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIISVIELSNLYSISLDV 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + N V Sbjct: 61 LLKGDEKMIEHLEESTNVV 79 >gi|317056742|ref|YP_004105209.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449011|gb|ADU22575.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 146 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R+ G+SQE+L E + +T Q V ++E G L+ +S + E I+ Sbjct: 7 IRELRVKRGLSQEELAEKVYVTRQAVSRWENGDTVPNTETLKLLSVLFEVSIN 59 >gi|323706165|ref|ZP_08117733.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534458|gb|EGB24241.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 118 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 VG RIR R +G+++E+ E +G++ + E+ + I++ L + Sbjct: 14 VGMRIRAERERIGLTREQFAEAVGVSAMYIGHIERAQRVMSLKTFVRIAKSLHVSTDYLL 73 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 F + + +E+ +++ + Sbjct: 74 FGIGEAENKNNDGKEDALIELL 95 >gi|313889294|ref|ZP_07822945.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122342|gb|EFR45430.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 367 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R G++QE+L E + +T V K+E G + L ++ + Sbjct: 4 IGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63 Query: 75 DVSPTVCS 82 P + S Sbjct: 64 GYDPDLSS 71 >gi|257463085|ref|ZP_05627486.1| MerR family transcriptional regulator [Fusobacterium sp. D12] gi|317060684|ref|ZP_07925169.1| transcriptional regulator [Fusobacterium sp. D12] gi|313686360|gb|EFS23195.1| transcriptional regulator [Fusobacterium sp. D12] Length = 182 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R +S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 1 MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60 Query: 73 FFDVSPTVCS 82 + + Sbjct: 61 LIEDDEVQKN 70 >gi|188591420|ref|YP_001796019.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis] gi|170938815|emb|CAP63813.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 120 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 15/134 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P R+R R G++Q +L + G+ + +E G + L+ Sbjct: 1 MSQSTPPPTSPSAVFPSRLRTAREYRGLNQGELAQKAGMQPSAISHFETGTRKPSFDNLR 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ L+ + V DF + +L+R++ + R+ Sbjct: 61 ILADSLDVTTDYLL--------------GRVEDFKALAGADRLHRHYGSL-QPSDRKMAD 105 Query: 121 ELVRSIVSSEKKYR 134 +L+ + ++ Sbjct: 106 DLITMLAKRAQEKG 119 >gi|116334877|ref|YP_796403.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100224|gb|ABJ65372.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 254 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFFDVS 77 I+ R ++QE L + L +T Q V +E G N L +S++ + F+ Sbjct: 7 IKTLRRQSNLTQEALAQQLHVTRQTVSTWETGKNMPNLETLHALSQLFNISLEKLLFNEE 66 Query: 78 PTVCSDISSEENNVMD 93 T+ D +D Sbjct: 67 ITMKKDKDPSLATQID 82 >gi|90592682|ref|YP_529597.1| hypothetical protein CDBPCV119_gp46 [Clostridium phage phi CD119] gi|71482537|gb|AAX53474.1| hypothetical protein [Clostridium phage phi CD119] Length = 72 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+L R + M+Q++ GI+ + Q YE G L IS L F +S Sbjct: 7 NIKLVRKQMNMTQKQFASLFGISERAYQYYEAGSREPNLETLILISNKLNVSTDFLLGLS 66 Query: 78 PTVCSD 83 P + Sbjct: 67 PNQNRN 72 >gi|82702660|ref|YP_412226.1| XRE family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82410725|gb|ABB74834.1| transcriptional regulator, XRE family [Nitrosospira multiformis ATCC 25196] Length = 189 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 36/59 (61%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ + IR R L ++Q +L E +G++ Q VQ++E G + RL I+EVL+ P + Sbjct: 6 MDIARIIREGREKLKLNQSELAELVGVSPQAVQQWESGATQPRGKRLNKIAEVLKLPPA 64 >gi|328885857|emb|CCA59096.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces venezuelae ATCC 10712] Length = 509 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L + L + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQTQLADALATSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|269929183|ref|YP_003321504.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788540|gb|ACZ40682.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R G + +L G++ QV + E+G N L +++ LE I++F Sbjct: 17 QIGPALRALRERRGWTLAQLAAESGVSRSQVWRLEQGQNVPSYLTLARLAKALEVEINYF 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T +++ + ++ + + P+ F ++ ++ R +++ +R + +++ Sbjct: 77 TSFESTA-TELDRDLSSYLRRVGVPE--DTWAEFGRLG-LEARGALLDALRRLTEPQEQV 132 Query: 134 RTIEE 138 + + Sbjct: 133 ASRQR 137 >gi|288549632|ref|ZP_05967658.2| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] gi|288318084|gb|EFC57022.1| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 183 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 2/90 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++ R G S L E G++ + + E+ + S L I+ L P S F Sbjct: 14 HLASTLKALRQARGWSLSMLAEKTGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAF 73 Query: 74 F--DVSPTVCSDISSEENNVMDFISTPDGL 101 + D + V + L Sbjct: 74 ITPEAESPAVYDPQQQAMVVKPLFPWDEAL 103 >gi|154483973|ref|ZP_02026421.1| hypothetical protein EUBVEN_01681 [Eubacterium ventriosum ATCC 27560] gi|149735015|gb|EDM50901.1| hypothetical protein EUBVEN_01681 [Eubacterium ventriosum ATCC 27560] Length = 236 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +++ R +SQE+L L ++ Q + K+E G + L IS + + + Sbjct: 1 MTFSSKLQKLRKDNNLSQEQLASELCVSRQAISKWELGT-LPDINNLVKISNFFDCSLDY 59 Query: 73 FFDVSPTV--CSDISSEENNVMD 93 + + S+E+N + + Sbjct: 60 LMNDDKEDQFEEEFSNEQNKIAN 82 >gi|324328552|gb|ADY23812.1| putative DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 387 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++L R MS L L I+ Q V KYEK ++ + + VL P F+F+ Sbjct: 8 GERLKLARRFNAMSLLDLAGKLSISKQMVSKYEKNISPPSGEIMLQLEGVLGFPRKFYFE 67 Query: 76 VS 77 Sbjct: 68 DD 69 >gi|322434732|ref|YP_004216944.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321162459|gb|ADW68164.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 177 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 7/116 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I V +R R + +SQ +L + + + K E G S L ++ LE IS Sbjct: 63 IQVATAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALEVDIS- 121 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + D + +N + T L + D R + VR + + Sbjct: 122 ------ALLRDAPTRHSNETAMLVTDPFLAEIAAYTSQLDSLQRSIFLNHVRELAA 171 >gi|291283823|ref|YP_003500641.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str. CB9615] gi|290763696|gb|ADD57657.1| hypothetical protein G2583_3129 [Escherichia coli O55:H7 str. CB9615] Length = 224 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + NP +++ R + RR+ LGM+Q ++ G++ Q ++ E G R L +++ Sbjct: 13 RRTNP--MSLAARFKARRLELGMTQVEVANSAGVSQQSIESIESGRTR-KPRNLLDLAKA 69 Query: 66 LESPISFFFDV 76 L+ + + Sbjct: 70 LKCSPDWLLNG 80 >gi|256377995|ref|YP_003101655.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922298|gb|ACU37809.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 197 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R G+S +L E G++ + + + E G S + ++ L + Sbjct: 11 VLLGNRIRALRKAAGLSVVRLAELSGVSRRMLTQIELGQANPSLSTVDRVASALGTT--- 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 F V D E ++ STP G Sbjct: 68 -FSALAGVLGDPLPEG---VEVWSTPGG 91 >gi|227873927|ref|ZP_03992147.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840233|gb|EEJ50643.1| transcriptional regulator [Oribacterium sinus F0268] Length = 191 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GK+I+ R ++Q+ L E + ++ Q + +E + + + +SEVLE + Sbjct: 4 GKKIKYYRNEKSLTQDNLAERIFVSRQTISNWENDKSYPDINSIILLSEVLEVSVD 59 >gi|223986398|ref|ZP_03636404.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] gi|223961640|gb|EEF66146.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] Length = 358 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 38/80 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I L R G +Q +L E LGIT + V K+E G + + L +SE L +S Sbjct: 4 MKIGGFIALCRKEKGWTQSQLAEILGITDKAVSKWETGKSLPDYALLTPLSEALGITLSE 63 Query: 73 FFDVSPTVCSDISSEENNVM 92 F D+ + + V+ Sbjct: 64 LFSGERIRAEDLMEKTDQVL 83 >gi|261408465|ref|YP_003244706.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284928|gb|ACX66899.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 189 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+ ++ R G+S + + E G++ + + E+G + S L I L Sbjct: 3 PIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGIS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + + + T + +S ++ ++ +G Sbjct: 63 FTTLIEEAETEVTVVSPDD---VEPFHEAEG 90 >gi|187780191|ref|ZP_02996664.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] gi|187773816|gb|EDU37618.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] Length = 183 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E GI+ + + EKG + L I++ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPY 62 Query: 71 SFFFD 75 + + Sbjct: 63 TSLLE 67 >gi|118617981|ref|YP_906313.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118570091|gb|ABL04842.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 483 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G +++ + G R+R R G++Q L LG++ V + E + S L + Sbjct: 4 GARRVSHVPKTFAGARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLAL 63 Query: 63 SEVLESPISFFFDVSPT 79 +E + P +F S Sbjct: 64 AERFDLPTHYFAPDSDA 80 >gi|71725303|ref|YP_272277.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558893|gb|AAZ38102.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 118 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS + Sbjct: 7 FVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 66 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 DV T + + + +P+ L+ F+ Sbjct: 67 LPGGQDVLRTRLISLRQAIADKAIEVDSPESLEEILAFM 105 >gi|28211116|ref|NP_782060.1| putative transcriptional regulatory protein [Clostridium tetani E88] gi|28203556|gb|AAO35997.1| putative transcriptional regulatory protein [Clostridium tetani E88] Length = 235 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E GI+ + + EKG + L I++ L+ P Sbjct: 55 INSIIAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPY 114 Query: 71 SFFFD 75 + + Sbjct: 115 TSLLE 119 >gi|331092590|ref|ZP_08341409.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400601|gb|EGG80215.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium 2_1_46FAA] Length = 162 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R +SQ ++ E L +T Q+V ++E G + ++ ++E+ ++ Sbjct: 5 EKLCKYRKERKLSQAEIAEKLNVTRQKVSRWEHGTSVPNIETMKQLAEIYGVNVT 59 >gi|300904120|ref|ZP_07121994.1| transcriptional repressor DicA [Escherichia coli MS 84-1] gi|301307000|ref|ZP_07213040.1| transcriptional repressor DicA [Escherichia coli MS 124-1] gi|300403913|gb|EFJ87451.1| transcriptional repressor DicA [Escherichia coli MS 84-1] gi|300837790|gb|EFK65550.1| transcriptional repressor DicA [Escherichia coli MS 124-1] gi|315253246|gb|EFU33214.1| transcriptional repressor DicA [Escherichia coli MS 85-1] Length = 135 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 50/131 (38%), Gaps = 18/131 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+ RR L ++Q + G+ + ++E+ + RL +++ L+ ++ Sbjct: 4 RTLGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQPVGKRLFALADALKCSPTW 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + E + + + +++IEL ++ SSE++ Sbjct: 64 LMFGDEDKAPVPAQELHVETELTPSH------------------KELIELFDALPSSEQE 105 Query: 133 YRTIEEECMVE 143 E VE Sbjct: 106 ALLSEMRARVE 116 >gi|291534560|emb|CBL07672.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 144 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPI 70 ++ +G RI + R + E++ + +G+ +Q+YEKG +N V +Q I++ L Sbjct: 3 NVEIGYRIYMARKENHATLEEVAKKVGLAKSTIQRYEKGLINDVKLPNIQSIAKALNVNP 62 Query: 71 SF 72 ++ Sbjct: 63 NW 64 >gi|262066094|ref|ZP_06025706.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] gi|291380189|gb|EFE87707.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] Length = 184 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 33/74 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISS 86 + +I Sbjct: 61 LIEDEEDDIRNIEH 74 >gi|222081485|ref|YP_002540848.1| adenylate/guanylate cyclase protein [Agrobacterium radiobacter K84] gi|221726164|gb|ACM29253.1| adenylate/guanylate cyclase protein [Agrobacterium radiobacter K84] Length = 1342 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 27/49 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +I R LG+SQ +L LG+ Q + ++E G +R ++ I+++ Sbjct: 15 AKIIEGRTRLGLSQTELAAELGLKQQAISRWEAGTHRPSVDQVPAIAKL 63 >gi|251794538|ref|YP_003009269.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542164|gb|ACS99182.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 74 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-- 71 VG IR R L M+Q++L + +G+T Q + EKG IS PI Sbjct: 6 VGNHIRKLRFNLNEMTQQQLADKVGVTRQTIVALEKGNYSPSLELAFRISHTFGLPIEEI 65 Query: 72 FFFDVS 77 FF+ Sbjct: 66 FFYGDD 71 >gi|46402122|ref|YP_006616.1| Gp36 [Klebsiella phage phiKO2] gi|40218266|gb|AAR83052.1| Gp36 [Klebsiella phage phiKO2] Length = 202 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R++ RR+ L M+ +++ E +GI+ VQ E+G +++ L P+ + Sbjct: 9 GERLKARRLELKMTLKQVAESVGISLPGVQNLERGDVMPSLEIGLALAKCLRMPVQWILY 68 Query: 75 --DVSPTVCSDISSEEN 89 + P I + E+ Sbjct: 69 GTESDPDRVPVIGTTES 85 >gi|27467714|ref|NP_764351.1| hypothetical protein SE0796 [Staphylococcus epidermidis ATCC 12228] gi|57866618|ref|YP_188269.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|251810551|ref|ZP_04825024.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|293366914|ref|ZP_06613589.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315258|gb|AAO04393.1|AE016746_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637276|gb|AAW54064.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|251805962|gb|EES58619.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|291318889|gb|EFE59260.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329732828|gb|EGG69174.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] gi|329734233|gb|EGG70549.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] gi|329735546|gb|EGG71834.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 179 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I ++QE+L E ++ + + E ++ EVL + S Sbjct: 1 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF +E + D Sbjct: 61 FFKEPSDEKVLYKKKEQTIYD 81 >gi|116493699|ref|YP_805433.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116103849|gb|ABJ68991.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 373 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++Q+ L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 S 71 Sbjct: 61 D 61 >gi|307129762|ref|YP_003881778.1| hypothetical protein Dda3937_04485 [Dickeya dadantii 3937] gi|306527291|gb|ADM97221.1| hypothetical protein Dda3937_04485 [Dickeya dadantii 3937] Length = 86 Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R+ ++QEKLG GI +V +YE G++R + ++VL P + Sbjct: 4 ARLKTARLRADLTQEKLGVLAGIEEETARSRVSQYEGGIHRPTFEMMCAFAKVLNVPECY 63 Query: 73 FFDVSPTVCS 82 F+ V+ Sbjct: 64 FYTVNDDFAE 73 >gi|295107554|emb|CBL05097.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 451 Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 11/98 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++N+G I R G++Q L LG+T V K+E G + + L I+ + Sbjct: 2 HEVNIGATIARERSAAGVTQGALAAHLGVTKAAVSKWELGQSLPDVALLPRIAAYFGITL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 F P + D E +V L+L R F Sbjct: 62 DELFAFRPQLTED---EVRDVY--------LELCRLFA 88 >gi|212697471|ref|ZP_03305599.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] gi|212675470|gb|EEB35077.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] Length = 140 Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPI 70 +++ G ++R R ++Q++L + +G++ + + +YE G ++ ++ ++EVL++ Sbjct: 8 NMSFGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTSH 67 Query: 71 SFFFDVSPTVCSDISSE 87 + D + Sbjct: 68 DYLVTDEDNFILDAREK 84 >gi|220926724|ref|YP_002502026.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951331|gb|ACL61723.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R G++ E L E G + + + + G V L ISE L+ P++ Sbjct: 16 NRIAEWREKRGLTLEALAEATGFSTGYLSRMQNGSRNVSLKNLAKISEALKVPVADLVPE 75 Query: 77 SPTVCSDISSEE 88 V + Sbjct: 76 GEEVPPGGEASP 87 >gi|295095877|emb|CBK84967.1| Predicted transcriptional regulators [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 175 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 2/94 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + ++ ++ R G S KL E G++ + + E+ + S L I+ L P Sbjct: 2 DITQHLATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVP 61 Query: 70 ISFFF--DVSPTVCSDISSEENNVMDFISTPDGL 101 S F + P D + V + L Sbjct: 62 FSAFITPESEPQAVFDPQQQAMVVKPLFPWDEQL 95 >gi|289167282|ref|YP_003445549.1| repressor (phage associated) [Streptococcus mitis B6] gi|288906847|emb|CBJ21681.1| repressor (phage associated) [Streptococcus mitis B6] Length = 246 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 29/118 (24%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG------ITFQQ--VQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E+L + L I F + + K+E S ++ I++ Sbjct: 2 IGTKIRELRKNNKLTLEELADALNQKYPNTINFNKGKISKWENNKEEPRLSSVKIIADFF 61 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + P+ +F D S P+ L + + Q+++ K ++K+++ + Sbjct: 62 DVPLDYFNDTPD-----------------SHPEILTI---YNQLEEPK-QEKVLDYAK 98 >gi|251790166|ref|YP_003004887.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538787|gb|ACT07408.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + V +G+R++ R+ G+SQE E G+ + E+GV L ++ Sbjct: 2 KTSDSVKTLLGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILAAG 61 Query: 66 LESPISFFF 74 L + ++ F Sbjct: 62 LHTDLTTLF 70 >gi|228995259|ref|ZP_04154973.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM 12442] gi|228764497|gb|EEM13332.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM 12442] Length = 142 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++ R SQE + +G+T Q V K+E + L +SE+ E I Sbjct: 1 MNLGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDE 60 Query: 73 FFDVSPTVCSDI 84 S V ++ Sbjct: 61 LIKGSEDVRGEL 72 >gi|169824019|ref|YP_001691630.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|167830824|dbj|BAG07740.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] Length = 176 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L + + Q V K+E+G++ + L +SE+L++ +S Sbjct: 6 ENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILQTSVSVL--- 62 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + ++ E + +D IS Sbjct: 63 ---LGENVEETEQSELDKISEK 81 >gi|156933191|ref|YP_001437107.1| hypothetical protein ESA_01002 [Cronobacter sakazakii ATCC BAA-894] gi|156531445|gb|ABU76271.1| hypothetical protein ESA_01002 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G+SQ +L E +G+T Q + K E GV +++ ++ L ++ Sbjct: 6 ERLKKAREKAGLSQLQLAEQVGLTQQSIAKIENGVTE-QPRKIKQLALALGVTANWL--Q 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + ++ S E V ++ ST L F +I Sbjct: 63 YGDIDANGSYSEMIVKEWESTSADPDL---FTEIP 94 >gi|83720757|ref|YP_443247.1| helix-turn-helix domain-containing protein [Burkholderia thailandensis E264] gi|83654582|gb|ABC38645.1| Helix-turn-helix domain protein, putative [Burkholderia thailandensis E264] Length = 115 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 16/117 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VGK I RR ++QE + E LG+ + + + E+G+ +RL +++V + ++ Sbjct: 11 RRVGKAIARRREESQLTQEDVAEQLGVGNEAISRIERGIVMPTVARLVQLAKVFQCNVAD 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + D + + ++ +S + R+ ++ +V ++ + Sbjct: 71 LLTEASHRPDDQARHLSQLLTKLS----------------PQDRETLVSIVETLAAR 111 >gi|15895738|ref|NP_349087.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15025492|gb|AAK80427.1|AE007746_14 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325509888|gb|ADZ21524.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 78 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G++QE+LG +G++ Q + E IS+V I + F Sbjct: 3 NRLKELREAFGLTQEQLGNLIGVSRQAINSIETEKCEPSIWLAYDISKVFHKSIEYIF 60 >gi|257438888|ref|ZP_05614643.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198703|gb|EEU96987.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 99 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G RIR R G++QE+L L ++ + K E G LQ +S L + Sbjct: 6 KEFGGRIRDLRKKKGITQEQLSIMLNVSANHLAKVETGSRCCSIELLQDLSSCLNVRTDY 65 Query: 73 FFDVSPTVCSDISS 86 + + + Sbjct: 66 LLNGDAPHNNHLRE 79 >gi|229190704|ref|ZP_04317700.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228592837|gb|EEK50660.1| Transcriptional regulator [Bacillus cereus ATCC 10876] Length = 116 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNYLYGEN 65 Query: 78 PTVCSD 83 D Sbjct: 66 NEANKD 71 >gi|213968238|ref|ZP_03396382.1| phage repressor [Pseudomonas syringae pv. tomato T1] gi|301381283|ref|ZP_07229701.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13] gi|302062899|ref|ZP_07254440.1| putative phage repressor [Pseudomonas syringae pv. tomato K40] gi|213926876|gb|EEB60427.1| phage repressor [Pseudomonas syringae pv. tomato T1] Length = 228 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ IR R G+SQ+ L G + ++ YEKG + ++ IS+ L Sbjct: 4 LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKISDTLGVS 59 >gi|196038079|ref|ZP_03105389.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196031349|gb|EDX69946.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 67 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I+ L S I F F+ Sbjct: 6 KIKEYRTKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 76 VS 77 Sbjct: 66 DE 67 >gi|118590306|ref|ZP_01547709.1| putative transcription regulator protein [Stappia aggregata IAM 12614] gi|118437278|gb|EAV43916.1| putative transcription regulator protein [Stappia aggregata IAM 12614] Length = 147 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 14/124 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D +G+RI R +S +L LGI +Q +E + +++L ++ VL Sbjct: 35 NSSDYTLGERICKARDASSLSTAQLARRLGIKTSTLQSWESDRSEPRSNKLVLLAGVLNV 94 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ + SE N D S L +V+++ L I + Sbjct: 95 SPTWL---LVGRGTPPFSETNTTSDLDSMRVALD-----------RVQRQAQALADEIAA 140 Query: 129 SEKK 132 + + Sbjct: 141 LQDR 144 >gi|227533389|ref|ZP_03963438.1| DNA-binding protein; transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188955|gb|EEI69022.1| DNA-binding protein; transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 373 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++Q+ L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 S 71 Sbjct: 61 D 61 >gi|255519174|ref|ZP_05386850.1| putative prophage repressor [Clostridium difficile QCD-97b34] Length = 109 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R I +SQ++ GE L ++ + EKGV V + I + + Sbjct: 3 NRIKELRQIKHLSQKEFGETLNLSQNHISSIEKGVRTVTDRTINDICDKYNVNKKWLLTG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + D+ N + + + R F ++ D + R+ ++ L++ Sbjct: 63 QGEIFKDVLEGFN-----LDNSEVEEFIRLFYEV-DSETREYVLGLMQ 104 >gi|154250004|ref|YP_001410829.1| cupin 2 domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153940|gb|ABS61172.1| Cupin 2 conserved barrel domain protein [Fervidobacterium nodosum Rt17-B1] Length = 175 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G +QE+L + ++ + + E L+ + VL + + Sbjct: 1 MKIGSKIKRLRLARGYTQEELADRCDLSRSFISQLESDKVSPSVETLERVLRVLGTDLKH 60 Query: 73 FFDVS 77 FF Sbjct: 61 FFSDE 65 >gi|159898456|ref|YP_001544703.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891495|gb|ABX04575.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 80 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RIRL R I G M+Q LG+ +G+T Q + E G I+ V + P+ Sbjct: 6 LSNRIRLLRFINGEMTQADLGQRIGVTRQTIAAIEAGKYAPTLEAAFRIAHVFQVPLDEV 65 Query: 74 FDVSPTVCSDI 84 F P + + Sbjct: 66 FQWIPHDGAGM 76 >gi|160881041|ref|YP_001560009.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429707|gb|ABX43270.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 200 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VGK I+ R G +Q+++ L I+ + V K+E G S L +S VL + Sbjct: 6 VGKLIKQLRKEHGYTQQQVANALNISNKTVSKWENGFGCPDVSLLGELSIVLGVDL 61 >gi|229014519|ref|ZP_04171637.1| hypothetical protein bmyco0001_49220 [Bacillus mycoides DSM 2048] gi|229170059|ref|ZP_04297750.1| hypothetical protein bcere0007_49950 [Bacillus cereus AH621] gi|55419791|gb|AAV51966.1| PlcR [Bacillus cereus] gi|228613406|gb|EEK70540.1| hypothetical protein bcere0007_49950 [Bacillus cereus AH621] gi|228746869|gb|EEL96754.1| hypothetical protein bmyco0001_49220 [Bacillus mycoides DSM 2048] Length = 285 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKRLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|49479015|ref|YP_037453.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330571|gb|AAT61217.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 67 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I+ L S I F F+ Sbjct: 6 KIKEYRTKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 76 VS 77 Sbjct: 66 DE 67 >gi|30262515|ref|NP_844892.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778059|ref|YP_019162.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|52142975|ref|YP_083853.1| DNA-binding protein [Bacillus cereus E33L] gi|165868912|ref|ZP_02213572.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631977|ref|ZP_02390304.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637695|ref|ZP_02395974.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685312|ref|ZP_02876536.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704891|ref|ZP_02895357.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649731|ref|ZP_02932733.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565261|ref|ZP_03018181.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196040422|ref|ZP_03107723.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218903655|ref|YP_002451489.1| DNA-binding protein [Bacillus cereus AH820] gi|227814666|ref|YP_002814675.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228915109|ref|ZP_04078706.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927582|ref|ZP_04090634.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933813|ref|ZP_04096659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946161|ref|ZP_04108495.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229600860|ref|YP_002866842.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685091|ref|ZP_05148951.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722499|ref|ZP_05184287.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737541|ref|ZP_05195244.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743274|ref|ZP_05200959.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751856|ref|ZP_05203893.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760376|ref|ZP_05212400.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|301054058|ref|YP_003792269.1| DNA-binding protein [Bacillus anthracis CI] gi|30257147|gb|AAP26378.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47551764|gb|AAT31637.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|51976444|gb|AAU17994.1| DNA-binding protein [Bacillus cereus E33L] gi|164715638|gb|EDR21155.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514244|gb|EDR89611.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532275|gb|EDR94911.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130692|gb|EDS99553.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170670672|gb|EDT21411.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084805|gb|EDT69863.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563288|gb|EDV17253.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196028907|gb|EDX67513.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218535205|gb|ACK87603.1| DNA-binding protein [Bacillus cereus AH820] gi|227004640|gb|ACP14383.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228813507|gb|EEM59794.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825885|gb|EEM71672.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832062|gb|EEM77647.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844538|gb|EEM89592.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265268|gb|ACQ46905.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300376227|gb|ADK05131.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 66 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G +QE+L + +G++ Q + EK I+ V E PI+ FD Sbjct: 4 NRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDVFDY 63 Query: 77 SPT 79 Sbjct: 64 QEE 66 >gi|50121363|ref|YP_050530.1| regulator of pectin lyase production [Pectobacterium atrosepticum SCRI1043] gi|49611889|emb|CAG75338.1| regulator of pectin lyase production [Pectobacterium atrosepticum SCRI1043] Length = 244 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G+SQ+ LG+ +G++ +QK E G +++ +S L + + Sbjct: 7 ERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS-QTTKIVELSNALHIRPEWLANG 65 Query: 77 SPTVCSD 83 + SD Sbjct: 66 GGPMHSD 72 >gi|75758326|ref|ZP_00738450.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494188|gb|EAO57280.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 145 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G +++ R SQE + +G+T Q V K+E + L +SE+ E I Sbjct: 3 NMNLGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTID 62 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 S +++ ++ + + Sbjct: 63 ELIKGSEDAREELNKKDKDECE 84 >gi|311693576|gb|ADP96449.1| phage repressor [marine bacterium HP15] Length = 327 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPIS 71 + +G+R++ R + G +QE+LGE +G+T + EK R +++ ++E L + Sbjct: 1 MALGQRLKQARKLAGYTQEQLGERVGLTQAAIGALEKRDSQR--SNKAAEMAEALGVSLL 58 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 + S + + + + +D Sbjct: 59 WLVSGSGPMLEEEARKARKELD 80 >gi|297617996|ref|YP_003703155.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145833|gb|ADI02590.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 127 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R+R R G+S + + + LG +T K E G+ R + I++ L + I F Sbjct: 19 QRLRDLRKSKGISAKHMADLLGLVTKAAYYKKESGMTRFTLHEARIIAQRLGTSIDELFF 78 Query: 76 VSPTVCSDISSEENNVMDFIST 97 C D ++ V + ++ Sbjct: 79 ADEVSCRDTKADTETVSQYFAS 100 >gi|225026228|ref|ZP_03715420.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353] gi|224956479|gb|EEG37688.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353] Length = 141 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 17/115 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFF 73 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ + Sbjct: 43 VGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADALL 102 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 DV + +++E +++++ + + +++I+ VR++V Sbjct: 103 IDVVTHSVTGVTNELSDMIEKLPKDE----------------QKRILNAVRALVD 141 >gi|197302202|ref|ZP_03167261.1| hypothetical protein RUMLAC_00929 [Ruminococcus lactaris ATCC 29176] gi|197298633|gb|EDY33174.1| hypothetical protein RUMLAC_00929 [Ruminococcus lactaris ATCC 29176] gi|291526721|emb|CBK92307.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 209 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSE 87 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDK 83 >gi|160894257|ref|ZP_02075034.1| hypothetical protein CLOL250_01810 [Clostridium sp. L2-50] gi|156863958|gb|EDO57389.1| hypothetical protein CLOL250_01810 [Clostridium sp. L2-50] gi|295099077|emb|CBK88166.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 209 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSE 87 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDK 83 >gi|153811810|ref|ZP_01964478.1| hypothetical protein RUMOBE_02203 [Ruminococcus obeum ATCC 29174] gi|149832213|gb|EDM87298.1| hypothetical protein RUMOBE_02203 [Ruminococcus obeum ATCC 29174] Length = 209 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSE 87 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDK 83 >gi|295400956|ref|ZP_06810931.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976958|gb|EFG52561.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 139 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++++ R +QE+L + L I+ Q+ K+E G L+ +S + E I F Sbjct: 5 RKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGELLPDVQSLEKLSNLYEVSIDF 64 Query: 73 F 73 Sbjct: 65 L 65 >gi|228969784|ref|ZP_04130548.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228789936|gb|EEM37754.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 90 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR+ R G++QE+L E + + + E+G + LQ I+ LE F Sbjct: 2 VGENIRILRKKRGLTQEELAERINLQQAYIGGIERGERNISMLTLQKIAVGLEISPDKIF 61 Query: 75 DVSPTVCSDISSEENNV 91 + S + +E + Sbjct: 62 NFSNINSLENPQQEEFL 78 >gi|206725168|dbj|BAG71784.1| repressor of rdgA and rdgB [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G+SQ+ LG+ +G++ +QK E G +++ +S L + + Sbjct: 7 ERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS-QTTKIVELSNALHVRPEWLANG 65 Query: 77 SPTVCS 82 + S Sbjct: 66 EDPMRS 71 >gi|168183925|ref|ZP_02618589.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|237795812|ref|YP_002863364.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182672917|gb|EDT84878.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|229263033|gb|ACQ54066.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 78 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E G I++V I F F Sbjct: 3 NKLKQFREDLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHGTIEEVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESE 66 >gi|167768231|ref|ZP_02440284.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1] gi|317497813|ref|ZP_07956125.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709755|gb|EDS20334.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1] gi|291560246|emb|CBL39046.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|316894926|gb|EFV17096.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 115 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 11/118 (9%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D +GKRI+L R ++QE L E G++ + + E G + ++ L+ Sbjct: 3 IDLKELGKRIKLTRKGQDLTQEMLAEKAGVSQHYIYEIEAGRKAMSIHSFASLTTALDVS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + D+ + ++ + +LN R ++E++ +V Sbjct: 63 ADYLLFGDGQRIFDVDTPAHHNNQLMEI--AAELN--------PSQRDHVLEILEVMV 110 >gi|103487671|ref|YP_617232.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977748|gb|ABF53899.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 222 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G R++ R+ ++Q +L LG++ + +E R A R++ +SE L IS Sbjct: 128 GSRLQRLRVARELTQGQLAAQLGVSEPSISAWELDKARPKAGRMEALSEALGVEIS 183 >gi|330822028|ref|YP_004350890.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] gi|327374023|gb|AEA65378.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] Length = 191 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 6/99 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R L ++ +++ GI+ + + E+G L I+ L + +F Sbjct: 15 IGGRIRALRQRLKLTLDEVAVMAGISKPFLSQVERGRATPSLQSLVGIARALGVSMQYFV 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + S +E F + F ++ Sbjct: 75 EAPTEAKSVRRAETLQFFSFADS------ANSFARLTSQ 107 >gi|304440739|ref|ZP_07400622.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370772|gb|EFM24395.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 135 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 5/95 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +N G +I+ R G++Q++L + LG + + + YE R + ++E+ + ++ Sbjct: 1 MNFGNKIKSLREEKGLTQKELADMLGTSLKTISNYEVKGTRPRTMKNFEKLAEIFDVNVN 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + T + + + D L Sbjct: 61 YLL----TDEEYFIMQARDTYGYKGAKDAQDLVES 91 >gi|261402920|ref|YP_003247144.1| transcriptional regulator, XRE family [Methanocaldococcus vulcanius M7] gi|261369913|gb|ACX72662.1| transcriptional regulator, XRE family [Methanocaldococcus vulcanius M7] Length = 314 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 9/90 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP----IS 71 G ++ R +G+S KL E G++ + + KYE + I E L+ P I Sbjct: 125 GNVLKEVRESMGISVGKLAEVAGVSRKAIYKYETQMANPSVDVAIKIEEFLDVPLVRGID 184 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL 101 F P D+ ++ N+ DF + + Sbjct: 185 LF---EPVEDEDVENKLENLEDF--KKEAI 209 >gi|169633405|ref|YP_001707141.1| putative repressor protein from bacteriophage [Acinetobacter baumannii SDF] gi|169152197|emb|CAP01101.1| putative repressor protein from bacteriophage [Acinetobacter baumannii] Length = 254 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 14/103 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R ++Q L + +G++ V +EK A L ++ S+ + Sbjct: 8 GQRIRALRREKKLTQGDLAKIVGVSAPNVTGWEKDAYAPKADPLSKMAAYFGVSTSYITN 67 Query: 76 VSPTVCS-DISSEENNVMDFISTPDGLQLNRYF---IQIDDVK 114 + D + NV+D F I D + Sbjct: 68 GDESGPQLDSGGAQLNVLD----------IEAFKQKYNIPDSE 100 >gi|157150768|ref|YP_001451299.1| Cro/CI family transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075562|gb|ABV10245.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii str. Challis substr. CH1] Length = 167 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + D Sbjct: 6 KLFELRKEKGWSQEKLSEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLLLED 65 Query: 76 VSPTVCSDISSEEN 89 + SE+ Sbjct: 66 SDKPEIKPVLSEDE 79 >gi|114769125|ref|ZP_01446751.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] gi|114550042|gb|EAU52923.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] Length = 201 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N I +G IR R G++ L L + + + E+G +V + IS L Sbjct: 1 MTNSDKIRLGSEIREVRKARGLTLNNLSSMLSCSTAYLSRIERGTAQVSEILIVEISTAL 60 Query: 67 ESPISFFF 74 ++FF Sbjct: 61 NIEKNWFF 68 >gi|121607191|ref|YP_994998.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121551831|gb|ABM55980.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 229 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+++R RR LG+ +++ GI+ + + E+G+ + L +++ L PI Sbjct: 42 IDLWLGEQLRRRRQALGLPLQQVARACGISVSLLSQLERGLRSISMRTLGALAQELRLPI 101 >gi|148262729|ref|YP_001229435.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396229|gb|ABQ24862.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 187 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 9/88 (10%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D N+G +I+ R+ ++ + + + G + + + E + L I++ + + Sbjct: 3 DYNIGAKIKKLRLAKKLTLQAVAKETGFSPALISQIENNNVSPPIATLSRIAKFFDVKVG 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPD 99 FF EE + + + Sbjct: 63 MFF---------TEDEEEYKYEVVRKSE 81 >gi|328955940|ref|YP_004373273.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456264|gb|AEB07458.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 218 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +R+ R G SQE+L + LG++ Q + K+E+ + L ++ + + Sbjct: 1 MNVQTAQRLAELRRTKGYSQEELAQRLGLSRQAISKWERAESSPDTDNLIALARLYSVSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 ++ EE +T + Sbjct: 61 DELVGAPFGGTAEDLVEEAAAATRETTRE 89 >gi|295101511|emb|CBK99056.1| Predicted acetyltransferase [Faecalibacterium prausnitzii L2-6] Length = 381 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 11 VDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V G IR R ++Q +L E L ++ + + K+E S L+ ++ L Sbjct: 1 MDSYVTGTAIRQLREAKHLTQAELAEKLAVSAKAISKWETAHGLPDISLLEPLAAALGVS 60 Query: 70 ISFFFDVSPTVCSDISS 86 + P V + S+ Sbjct: 61 VLELMQGEPVVNRNRSA 77 >gi|289191957|ref|YP_003457898.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] gi|288938407|gb|ADC69162.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] Length = 66 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R + ++QE L + LG++ Q + EKG I++ I F Sbjct: 3 NKLKIYRAMYNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60 >gi|262200767|ref|YP_003271975.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084114|gb|ACY20082.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 182 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 34/104 (32%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R MS L GI + + E G L ++ L P+S Sbjct: 16 IGARITELRTARSMSLSALARAAGIGKGSLSELESGQRNPTIDTLYAVAGPLGVPLSALL 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 S ++ PDG +++ + VR+ Sbjct: 76 GEESGTEGSGRSLSARLLHVEHHPDGAVTEVFWLTVTPGDVRES 119 >gi|255102927|ref|ZP_05331904.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|296449255|ref|ZP_06891041.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296261924|gb|EFH08733.1| XRE family transcriptional regulator [Clostridium difficile NAP08] Length = 135 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ GM+QE + E + ++ Q + +E + + +S + + Sbjct: 1 MEIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIISVIELSNLYSISLDV 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + N V Sbjct: 61 LLKGDEKMIEHLEESTNVV 79 >gi|225016323|ref|ZP_03705515.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] gi|224950928|gb|EEG32137.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] Length = 119 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R GMSQE+L ++ + + E+ + + HI++ L + F Sbjct: 14 LGSRIRTLRQQKGMSQEELAFKASLSAAHLGQIERALKNPTVDTVSHIADALGITVDQLF 73 Query: 75 DVSPTVCSDISSEENNVMDFIST------PDGLQLNRYF 107 + N ++ ++ D L+L + F Sbjct: 74 QFDLPKQERENVTANKILAQLADMTPGQQRDVLKLIKIF 112 >gi|182418674|ref|ZP_02949950.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237669723|ref|ZP_04529700.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377451|gb|EDT75006.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237654797|gb|EEP52360.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 171 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG I+ R +SQ+ + + L + YE A L+ I++VL + Sbjct: 7 IKVGNNIKKIRKEKNISQKDMAKKLNMPSSTYSNYENNNREPNALTLKKIADVLSVDVHD 66 Query: 73 FFDVSPTVCS 82 +V + + Sbjct: 67 LLNVQSSNNN 76 >gi|149279478|ref|ZP_01885608.1| hypothetical protein PBAL39_16801 [Pedobacter sp. BAL39] gi|149229771|gb|EDM35160.1| hypothetical protein PBAL39_16801 [Pedobacter sp. BAL39] Length = 71 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++I++ R LG+SQ + E LGI+ K E G + +RL I++VLE + Sbjct: 4 RIVNQKIKVLRNKLGISQTMMAERLGISQNAFSKIELGQIDLTLNRLYKIADVLEVDV 61 >gi|54293108|ref|YP_125523.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens] gi|53752940|emb|CAH14376.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens] Length = 234 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ + LGE G+ ++ +E+GV G ++ ++E L+ Sbjct: 16 IKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLAEALDVS 75 Query: 70 ISFFFDVSPTV 80 ++ +S Sbjct: 76 PAYLMCLSDEA 86 >gi|84686565|ref|ZP_01014458.1| transcriptional regulator, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665478|gb|EAQ11955.1| transcriptional regulator, putative [Rhodobacterales bacterium HTCC2654] Length = 435 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P G RIR RR+ LG Q L +G++ + E R+G L ++ L + Sbjct: 2 PQSRLTGSRIRERRLALGTRQADLARAVGVSPAYLNLIEHNRRRIGGKLLVDLARELNTE 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + + + + + + TP+ L F Sbjct: 62 PAQLSEGAGQALVNALRDAAARFENV-TPE-LDRVEEFA 98 >gi|332982997|ref|YP_004464438.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700675|gb|AEE97616.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 71 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ + Q +L + GI+ + E G L +++ L+ I+ F Sbjct: 2 LGTKIKKLRINKKIKQIELAKAAGISNSFLSDIENGRTMPSLKTLYKLADALDVSITVFL 61 Query: 75 DVSPT 79 + + Sbjct: 62 EDDSS 66 >gi|260662800|ref|ZP_05863694.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] gi|260552881|gb|EEX25880.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] Length = 204 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I R GM+Q L E L I+ + + K+E G + + + + ++L+ ++ Sbjct: 4 IKIGKFIASCRKERGMTQANLAEKLRISDRAISKWETGKSMPDSGIMLELCDLLKINVNE 63 Query: 73 FFDVSP--TVCSDISSEEN 89 T D +EEN Sbjct: 64 LLSGERIMTEAYDKRAEEN 82 >gi|221070070|ref|ZP_03546175.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220715093|gb|EED70461.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 104 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISF 72 ++G+RIR RR LG+SQ +L + +T + + E G R + L ++ L++ Sbjct: 3 HLGERIRARRQALGLSQGRLAQMADVTASAISQIESGAIRTLKNDTLARLAIALQTTALE 62 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + ++E ++D Sbjct: 63 LMAGLHSETLSLPNDEQRLLD 83 >gi|55419787|gb|AAV51964.1| PlcR [Bacillus thuringiensis] gi|55419789|gb|AAV51965.1| PlcR [Bacillus thuringiensis] Length = 285 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGIEIKKIRAMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|16799151|ref|NP_469419.1| hypothetical protein lin0073 [Listeria innocua Clip11262] gi|16412493|emb|CAC95306.1| lin0073 [Listeria innocua Clip11262] Length = 158 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G SQ KL + LG + QV YE+G L I+E + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 77 SPTVCSDI 84 +D Sbjct: 64 DDNNLADT 71 >gi|120536951|ref|YP_957009.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326785|gb|ABM21094.1| transcriptional regulator, XRE family [Marinobacter aquaeolei VT8] Length = 229 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ G RI+ R I +SQ L +G+T + + E G+ AS L ++ L+ Sbjct: 4 DMQFGTRIKQIREIRKISQGFLARQVGLTQATISRIESGIPEATAS-LLDMARALKVDPF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFIS 96 + S S+ E V +F+ Sbjct: 63 WL---QTGEGSPDSAPEWLVSNFLR 84 >gi|315612472|ref|ZP_07887385.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315453|gb|EFU63492.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 71 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R +SQ+ L + +G+ + +E G +++ + ++E I + Sbjct: 7 NRIKELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLLGS 66 Query: 77 SPTV 80 Sbjct: 67 ESDQ 70 >gi|317499111|ref|ZP_07957390.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|291524086|emb|CBK89673.1| Helix-turn-helix [Eubacterium rectale DSM 17629] gi|316893631|gb|EFV15834.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 209 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSE 87 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDK 83 >gi|283797040|ref|ZP_06346193.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075456|gb|EFE12820.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291528288|emb|CBK93874.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] gi|291534520|emb|CBL07632.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 207 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPIS 71 +G R + RR LG++Q + E +G+T +Q+YE G + L+ +++ L + Sbjct: 9 KTIGSRAKSRRQELGLNQPYVAEKMGVTASTIQRYEAGTIDNTKKMTLEGLADALHVSVE 68 Query: 72 FFFDVSPTVCSDISSE-ENNVMDFIST 97 + + +DI+ + E + D +++ Sbjct: 69 WLKGETDEYETDITDKRELQIRDVMTS 95 >gi|225018741|ref|ZP_03707933.1| hypothetical protein CLOSTMETH_02691 [Clostridium methylpentosum DSM 5476] gi|224948469|gb|EEG29678.1| hypothetical protein CLOSTMETH_02691 [Clostridium methylpentosum DSM 5476] Length = 116 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI R L + Q+ L +GIT + KYE+ +N A L I++ L + F Sbjct: 2 LTLGDRIISLRQDLDIQQKDLAAQIGITKSSMSKYERNINIPNAEILSKIADALNTTTDF 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +P+ SS +ST + L R F ++D R +I+E Sbjct: 62 LLGRTPSKQPLSSSLMR-----LSTDEQRLLQR-FGLLNDQN-RARILE 103 >gi|329927927|ref|ZP_08281955.1| cupin domain protein [Paenibacillus sp. HGF5] gi|328938146|gb|EGG34542.1| cupin domain protein [Paenibacillus sp. HGF5] Length = 189 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+ ++ R G+S + + E G++ + + E+G + S L I L Sbjct: 3 PIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGIS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + + + T + ++ ++ ++ +G Sbjct: 63 FTTLIEEAETEVTVVAPDD---VEPFHEAEG 90 >gi|330468037|ref|YP_004405780.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811008|gb|AEB45180.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 192 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 10/105 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + +L + GI+ + + E G R L ++ + P+ Sbjct: 11 VGPRLRALRKNRGTTLSELADTTGISVSTLSRLESGQRRPTLELLLPLARAHQVPLDELV 70 Query: 75 DVSPTVCSDISSEENNV------MDFISTPDGLQLNRYFIQIDDV 113 +P V V + P GLQ F QI Sbjct: 71 -GAPAVGDPRVHPRPIVRHGTTFLPLTRRPGGLQ---AFKQILPP 111 >gi|257419815|ref|ZP_05596809.1| predicted protein [Enterococcus faecalis T11] gi|257161643|gb|EEU91603.1| predicted protein [Enterococcus faecalis T11] Length = 141 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ R+ MSQ+KL E GI+ + KYEKG + +S+VL Sbjct: 11 LKSLRLERKMSQKKLAELAGISQSALAKYEKGTRNISNELDSALSKVLNVD 61 >gi|225863781|ref|YP_002749159.1| transcriptional regulator [Bacillus cereus 03BB102] gi|225789739|gb|ACO29956.1| transcriptional regulator [Bacillus cereus 03BB102] Length = 116 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 RI+ R+ M+QE+ G+ + +T V K+E G G ++ I++ P+++ + + Sbjct: 6 RIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPGRETIEKIAKRFNVPVNYLYGEN 65 Query: 76 VSPTVCSDISSEENNVMDFIS----TPDGLQL 103 D + +MD++ + + L Sbjct: 66 KDDNSIDDKYKKFKEIMDWLEPLPKDKEDIAL 97 >gi|3219886|sp|Q57720|Y272_METJA RecName: Full=Uncharacterized HTH-type transcriptional regulator MJ0272 Length = 66 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R + ++QE L + LG++ Q + EKG I++ I F Sbjct: 3 NKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60 >gi|313888356|ref|ZP_07822026.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845636|gb|EFR33027.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 367 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R G++QE+L E + +T V K+E G + L ++ + Sbjct: 4 IGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63 Query: 75 DVSPTVCS 82 P + S Sbjct: 64 GYDPGLSS 71 >gi|312126654|ref|YP_003991528.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776673|gb|ADQ06159.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 105 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 24/66 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ R G+S KL + G+ + E G + I L + FF Sbjct: 4 VGKRIKELREQCGLSMSKLAKIAGVGQSTLSYIENGERSPTIDVIMKICNALGITLVEFF 63 Query: 75 DVSPTV 80 Sbjct: 64 GGEEKT 69 >gi|257063944|ref|YP_003143616.1| 4-diphosphocytidyl-2-methyl-D-erythritol synthase [Slackia heliotrinireducens DSM 20476] gi|256791597|gb|ACV22267.1| 4-diphosphocytidyl-2-methyl-D-erythritol synthase [Slackia heliotrinireducens DSM 20476] Length = 321 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + I+LRR+ LG++Q++L +G + V K E + S+L +++ L++ Sbjct: 1 MTIATNIKLRRLELGLTQDQLARAIGYRSRSAVAKIESDATDLPVSKLLLLAQALDTTPE 60 Query: 72 FFFDVSPTVCSDISSEEN 89 + + + E+ Sbjct: 61 RLLEGAGEFSYSDAGSES 78 >gi|283795786|ref|ZP_06344939.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291076417|gb|EFE13781.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 115 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K D G RI RR +G+SQ++L +GI Q + E G + L + Sbjct: 1 MSSKAQTREKDYERGIRIADRRKEIGLSQDELAHRVGIGRQALSAIENGGD-FKTQTLDN 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVM 92 ++ VL + F S++ SE +V+ Sbjct: 60 LAIVLGVSVDFIMYGKNEEKSELLSEAMDVL 90 >gi|225019513|ref|ZP_03708705.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] gi|224947734|gb|EEG28943.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] Length = 154 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 16/105 (15%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R+ G++Q L + L ++ V +E G + + ++ + + + S Sbjct: 50 RLRQLRLERGLTQAALAKHLDVSQGTVGNWEGGKREPDFATVARLAALFGTTVDDLIGNS 109 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 PT + L R I + + R+KI+++ Sbjct: 110 PTKAETKL---------------ILLARKAEHIPEQE-REKILQV 138 >gi|254466890|ref|ZP_05080301.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206687798|gb|EDZ48280.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 218 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 9/89 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R M +LGE G++ + + E+G + L I+ V + FF Sbjct: 31 IGPKLRSLRQGKDMGLAQLGEHTGLSAAMLSRIERGQVFPTLATLLRIAMVFGVGLDHFF 90 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 E+ V++ + D L+L Sbjct: 91 ---------GPGEDAPVLEIVRQRDRLKL 110 >gi|257459294|ref|ZP_05624408.1| putative transcriptional regulator [Campylobacter gracilis RM3268] gi|257443307|gb|EEV18436.1| putative transcriptional regulator [Campylobacter gracilis RM3268] Length = 259 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 14/90 (15%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-----GVN-------RVGASR 58 +DI+ ++IR R G++Q + E LGIT V YE G N + + Sbjct: 1 MDIH--QKIRAFRQEAGLTQVQFAEKLGITQGLVAHYETQPGEIGKNGKEKKSSKPELEK 58 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEE 88 L I+E+L + FD T I +E Sbjct: 59 LPLIAEILGKNVIDLFDDEETSKRQIVKKE 88 >gi|239630941|ref|ZP_04673972.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065263|ref|YP_003787286.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|239527224|gb|EEQ66225.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437670|gb|ADK17436.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 373 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++Q+ L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 S 71 Sbjct: 61 D 61 >gi|183597688|ref|ZP_02959181.1| hypothetical protein PROSTU_00981 [Providencia stuartii ATCC 25827] gi|188022960|gb|EDU61000.1| hypothetical protein PROSTU_00981 [Providencia stuartii ATCC 25827] Length = 145 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R ++ ++L + +GI+ QQ+ +YE G+ + L +LE + F Sbjct: 14 LRKARKEKKITGKELAKLMGISQQQISRYENGITPLTIDLLYKFLLILEIDGASFIQ--- 70 Query: 79 TVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKI 119 + + ++ NN +TP L Q R+FI+ + R +I Sbjct: 71 KIFHEYANGSNNKEPAPATPPSLSQYIRHFIKDKNSATRDEI 112 >gi|254359387|ref|ZP_04975659.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|148028574|gb|EDK86534.1| DNA-binding protein [Burkholderia mallei 2002721280] Length = 201 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 23 VALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 82 Query: 73 FFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 F + S ++ F + P+G QL +++ + R ++ Sbjct: 83 FVETPSEERSVCRGDQLRFFSFADSANLFARLTNVPEGRQLEAILVRMPPGQKRSEV 139 >gi|30021440|ref|NP_833071.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|206969324|ref|ZP_03230279.1| DNA-binding protein [Bacillus cereus AH1134] gi|218232223|ref|YP_002368049.1| DNA-binding protein [Bacillus cereus B4264] gi|29896994|gb|AAP10272.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|206736365|gb|EDZ53523.1| DNA-binding protein [Bacillus cereus AH1134] gi|218160180|gb|ACK60172.1| DNA-binding protein [Bacillus cereus B4264] Length = 66 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 RI+ R L M+QE L + +G+ + + EKG I++ L S I F F+ Sbjct: 6 RIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFE 65 Query: 76 V 76 Sbjct: 66 D 66 >gi|148548716|ref|YP_001268818.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512774|gb|ABQ79634.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 187 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + V +V +R R G+SQ L E G++ + + E G V + L Sbjct: 1 MHKDSSHRASVLQHVSLNVRSLRNAAGLSQAALAERSGVSRRMLVAIEAGEKNVSLTTLD 60 Query: 61 HISEVLES 68 I+E L Sbjct: 61 LIAEALGV 68 >gi|329851805|ref|ZP_08266486.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328839654|gb|EGF89227.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 67 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R R +G++Q L LG++ Q V E + IS V + P+ F+ Sbjct: 5 LRELRTEMGLTQADLAAKLGVSRQAVIALETDKHIPSLDLAYKISAVFDRPVESIFE 61 >gi|314937222|ref|ZP_07844567.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] gi|313654655|gb|EFS18402.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] Length = 87 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R L +SQ++L + + +T Q V E G + I++ L+ ++ F Sbjct: 22 NNIKYYRKELKISQQELADRVEVTRQTVSLIELGKYNPTINLCIRIAKALDVDLNKLF 79 >gi|313499627|gb|ADR60993.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 99 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R + G++Q +L E G + + ++E + ++VL FF Sbjct: 2 GIALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVLGVKPKDFFA 61 Query: 76 VSPTVCSDIS 85 + Sbjct: 62 EPDDEEEQRA 71 >gi|325918018|ref|ZP_08180182.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] gi|325535782|gb|EGD07614.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] Length = 128 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 56/116 (48%), Gaps = 14/116 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPISF 72 R+ R + G+SQ LG+ +G+ + ++ +YE V +G L +++VL+ P+++ Sbjct: 12 ARLAQARQLRGLSQRALGDRMGLGKEKGSSRINRYEHQVTAIGFDNLNTLAQVLDVPVAY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQ-IDDVKVRQKIIELVRS 125 +D +S + ++ + + L + + D + K++EL+++ Sbjct: 72 L-------LADDASMADAILALSQADEAQRKVLTKLIPAVLQDPSMLSKLVELLQA 120 >gi|322804725|emb|CBZ02277.1| transcriptional repressor [Clostridium botulinum H04402 065] Length = 63 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K++++ R+ MSQE+L + +G+T Q + E G + I + L ++ F Sbjct: 4 KKMKIARIECDMSQEQLADAIGVTRQTIGLIELGKYNPSLNLCIAICKALNKTLNDLF 61 >gi|309777026|ref|ZP_07671995.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915236|gb|EFP61007.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 147 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R ++QE+L E + +T Q V ++E G + L+ +S V + I+ Sbjct: 7 LKNLREKNNLTQEQLAERVQVTRQAVSRWETGETQPNTDTLKLLSRVFDVSIN 59 >gi|307704202|ref|ZP_07641125.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307622233|gb|EFO01247.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 108 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + N+ +IR R+ ++Q++L E ++ + + E + I + LE Sbjct: 2 DDILENISNQIRDLRVSKKITQQELAERTNLSVPYISQIENSHRNISLETFVKIVDALEV 61 Query: 69 PISFFF 74 P+S FF Sbjct: 62 PLSDFF 67 >gi|293374278|ref|ZP_06620606.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] gi|292647111|gb|EFF65093.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] Length = 119 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR++ R G++Q++L + I+ V YE L S+V + Sbjct: 2 LGKRLKQLRNSAGLTQKELANKMNISSSAVSMYEADRRDPDTETLVKFSKVFNVTTDYL 60 >gi|255528351|ref|ZP_05395157.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185570|ref|ZP_06853979.1| tetratricopeptide repeat protein [Clostridium carboxidivorans P7] gi|255507961|gb|EET84395.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049698|gb|EFG89123.1| tetratricopeptide repeat protein [Clostridium carboxidivorans P7] Length = 434 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++ L + I + Sbjct: 6 LGEKIKRRRKDLNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANALNTSIEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + T I + N+ + + L Sbjct: 65 ESEETQAEKICTYFENIAESYIINEDL 91 >gi|255505268|ref|ZP_05345130.3| conserved domain protein [Bryantella formatexigens DSM 14469] gi|255269040|gb|EET62245.1| conserved domain protein [Bryantella formatexigens DSM 14469] Length = 86 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R M+Q++L + +G++ Q + + E+ I++V + I FD Sbjct: 22 SKIHIYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSMLLAYSIAKVFDVTIEDLFDF 81 Query: 77 SP 78 S Sbjct: 82 SE 83 >gi|218133915|ref|ZP_03462719.1| hypothetical protein BACPEC_01804 [Bacteroides pectinophilus ATCC 43243] gi|217991290|gb|EEC57296.1| hypothetical protein BACPEC_01804 [Bacteroides pectinophilus ATCC 43243] Length = 128 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK +D ++G R++ R+ ++ ++L E G++ + +++ E N +L Sbjct: 13 MAKSKK----IDKDMGFRLKKARLDQKLTYDELSEKSGVSSRYIKEIENHGNVPSLEKLG 68 Query: 61 HISEVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDG--LQLNRYFIQ 109 + L FF+ +PT D + + S L L +++ Sbjct: 69 QLIRALHISADPFFYPAAPTDNLDYQRLLVYLSECTSDQITTILALVEAYLR 120 >gi|147918990|ref|YP_687283.1| transcription regulator [uncultured methanogenic archaeon RC-I] gi|110622679|emb|CAJ37957.1| predicted transcription regulator [uncultured methanogenic archaeon RC-I] Length = 184 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 V RI+ R IL +SQE + L I+ ++YE G + AS L IS L +S Sbjct: 6 KEVAARIKELREILDISQESMASDLRISQDTYRRYENGEEDIPASILYEISRKLGVEMS 64 >gi|53716415|ref|YP_105155.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121597232|ref|YP_991127.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381577|ref|YP_001025521.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126442447|ref|YP_001064011.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126446100|ref|YP_001077587.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|126458019|ref|YP_001076933.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|167000254|ref|ZP_02266073.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167725174|ref|ZP_02408410.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167744105|ref|ZP_02416879.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167821307|ref|ZP_02452987.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167829646|ref|ZP_02461117.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167899756|ref|ZP_02487157.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167908062|ref|ZP_02495267.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|167916410|ref|ZP_02503501.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167924271|ref|ZP_02511362.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217424415|ref|ZP_03455914.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226194042|ref|ZP_03789643.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|237509646|ref|ZP_04522361.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|238561521|ref|ZP_00441977.2| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242313514|ref|ZP_04812531.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254177387|ref|ZP_04884043.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254182642|ref|ZP_04889236.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254185685|ref|ZP_04892203.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254192472|ref|ZP_04898911.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254203094|ref|ZP_04909456.1| DNA-binding protein [Burkholderia mallei FMH] gi|254208427|ref|ZP_04914776.1| DNA-binding protein [Burkholderia mallei JHU] gi|254296435|ref|ZP_04963891.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52422385|gb|AAU45955.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121225030|gb|ABM48561.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126221938|gb|ABN85443.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126231787|gb|ABN95200.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|126238954|gb|ABO02066.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147746139|gb|EDK53217.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751114|gb|EDK58182.1| DNA-binding protein [Burkholderia mallei JHU] gi|157806343|gb|EDO83513.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157933371|gb|EDO89041.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160698427|gb|EDP88397.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169649230|gb|EDS81923.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184213177|gb|EDU10220.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217392880|gb|EEC32903.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225933987|gb|EEH29973.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|235001851|gb|EEP51275.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|238524516|gb|EEP87949.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242136753|gb|EES23156.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|243063746|gb|EES45932.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|261826389|gb|ABN00454.2| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 179 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 1 MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 F + S ++ F + P+G QL +++ + R ++ Sbjct: 61 FVETPSEERSVCRGDQLRFFSFADSANLFARLTNVPEGRQLEAILVRMPPGQKRSEV 117 >gi|330719170|ref|ZP_08313770.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 286 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R + G+SQ++LG+ +G + V + E L + L +FD Sbjct: 6 GSVIKEIRKLRGISQQQLGQLIG-SQSMVSRIENNKAEPSDHTLLLLCHALNISFDEYFD 64 Query: 76 VSPTVCSDISSEENNVMDFIS 96 + V +S+ + DF+S Sbjct: 65 M---VYGTHASDTERLFDFVS 82 >gi|291543534|emb|CBL16643.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 201 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R GM+QE+L L ++ V K+E G L+ IS + Sbjct: 5 EKLQELRKQRGMTQEELATALYVSRTAVSKWESGRGYPSIDSLKAISGFFGVSLD 59 >gi|255282960|ref|ZP_05347515.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255266499|gb|EET59704.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 228 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ MSQE+L E + +T Q + +E G N L +S + + Sbjct: 34 MEIGTQIKKYRLASEMSQEELAEKIYVTRQTISNWENGRNYPDVKSLLLLSSLFNISLDI 93 Query: 73 FFDVSPTVCSDISSEEN 89 + +EE+ Sbjct: 94 LVKGDIEEMKEKINEED 110 >gi|332653329|ref|ZP_08419074.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] gi|332518475|gb|EGJ48078.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] Length = 194 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G IR R G++Q +L + L ++ + V K+E+G S L +++ L + Sbjct: 6 IGALIRSLRTQQGLTQRELAQRLTVSDKAVSKWERGQGCPDVSLLPSLAQTLGVEV 61 >gi|291518587|emb|CBK73808.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 251 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G++Q++L + +G++ + V ++E G S + + + L+ I+ Sbjct: 8 GSFISEMRKEKGLTQKQLADLVGVSDKAVSRWETGKGLPDTSIMPELCKALDININELLS 67 Query: 76 VSPTVCSDISSEENNVM 92 + +M Sbjct: 68 GERLNPEAYRGKAEEIM 84 >gi|169351011|ref|ZP_02867949.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] gi|169292073|gb|EDS74206.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] Length = 117 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIR R+ +SQ+ L E I+ + E+G ++ L I+ L F Sbjct: 8 IGKRIREERISQNLSQQTLAEISNISPTNISHIERGATKLSLPTLVSIANALAVSADFL 66 >gi|160932990|ref|ZP_02080379.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] gi|156868064|gb|EDO61436.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] Length = 222 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQ E +GI+ V +E G ++ I++ + + Sbjct: 20 RLKELRENAGLSQYGFAEKIGISQSTVGNWEAGSREPNFKTMERIADFFGVSVDYL 75 >gi|91779338|ref|YP_554546.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|296157048|ref|ZP_06839885.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|91691998|gb|ABE35196.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia xenovorans LB400] gi|295892934|gb|EFG72715.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 190 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 11/129 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV + NP + +G +IR R L + + GI+ + + E+G+ + L Sbjct: 1 MVTTIQKSNPA-LEIGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLA 59 Query: 61 HISEVLESPISFFFDVSPTVC----------SDISSEENNVMDFISTPDGLQLNRYFIQI 110 I+ L + +F D + N + G QL +++ Sbjct: 60 GIANALGVTVQYFVDTPSEERCVSRGDQLRFFGFADSANLFARLTNVTGGRQLEAILVRM 119 Query: 111 DDVKVRQKI 119 + R ++ Sbjct: 120 PPGQKRSEV 128 >gi|13488172|ref|NP_085894.1| hypothetical protein mll9374 [Mesorhizobium loti MAFF303099] gi|14028429|dbj|BAB54981.1| mll9374 [Mesorhizobium loti MAFF303099] Length = 405 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ ++ VGKR+R R +S E L +G++ Q+ K E G + L Sbjct: 16 MDARSEVEKQINGMVGKRLREARKAKSLSLEALAGKVGMSVSQLSKLETGKAPASIAALV 75 Query: 61 HISEVLESPISFFFDVSPTVCSDISS 86 L+ +F + + + Sbjct: 76 RFGLELDRSAQYFLQSDSEMPRCLGT 101 >gi|256377491|ref|YP_003101151.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921794|gb|ACU37305.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 192 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+R+R R G + L E GI+ + + E G R L I+ P+ Sbjct: 8 QVGERLRALRASRGATLADLAEVTGISKSTLSRLESGQRRPSLELLLPIARAHRVPLDEL 67 Query: 74 FDVSP 78 P Sbjct: 68 VGAPP 72 >gi|238761245|ref|ZP_04622222.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] gi|238761498|ref|ZP_04622474.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700472|gb|EEP93213.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700725|gb|EEP93465.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] Length = 193 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R LG++ +L + GI + + E G L ++ L+ P+S Sbjct: 23 IRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVS 75 >gi|46019834|emb|CAE52358.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 113 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R +Q ++ E LGI+ +E+GV + L I+++L + + Sbjct: 1 MEFSERLKELRKKANFTQVEVAEKLGISQPAYASWERGVKKPTQDNLVRIAQILNVSVDY 60 Query: 73 FFDVSPTVCSDISSEE 88 S ++ + E Sbjct: 61 LVGNSEEKADELDNIE 76 >gi|91774792|ref|YP_544548.1| transcriptional regulator [Methylobacillus flagellatus KT] gi|91708779|gb|ABE48707.1| transcriptional regulator, XRE family with cupin sensor domain [Methylobacillus flagellatus KT] Length = 212 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G P+ ++G I+ R G++ ++ E I+ + K E G+ L+ Sbjct: 11 AGGDSEIKPLGKHLGNVIKDIRQQHGLTIAEVAERANISRGMLSKIENGLVSTSLDTLEQ 70 Query: 62 ISEVLESPISFFFDV 76 ++ L IS F Sbjct: 71 LANSLGVTISRLFQG 85 >gi|55419783|gb|AAV51962.1| PlcR [Bacillus mycoides] Length = 285 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKRLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|32141280|ref|NP_733681.1| UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|256784482|ref|ZP_05522913.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|289768363|ref|ZP_06527741.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|24429550|emb|CAD55243.1| putative UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|289698562|gb|EFD65991.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] Length = 509 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+ IR R G +Q +L E L + V + E+G + + I E L+S I Sbjct: 7 VRIGRLIRDARQHRGWTQSQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|325954495|ref|YP_004238155.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] gi|323437113|gb|ADX67577.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] Length = 113 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GKR+R R +SQ+ L + +G + +YE+ + ++ +++ L + + + Sbjct: 2 VTFGKRLREAREAKNLSQQDLAKLIGSVHTVIGRYERDEMKPSIDVVKRLADELGTTVGY 61 Query: 73 FFDVSPTV 80 + Sbjct: 62 LIGEAKEA 69 >gi|170760571|ref|YP_001787673.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407560|gb|ACA55971.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 78 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E G I++V I F F Sbjct: 3 NKLKQFREDLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESE 66 >gi|167768289|ref|ZP_02440342.1| hypothetical protein CLOSS21_02845 [Clostridium sp. SS2/1] gi|296450915|ref|ZP_06892663.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296878605|ref|ZP_06902610.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|167709813|gb|EDS20392.1| hypothetical protein CLOSS21_02845 [Clostridium sp. SS2/1] gi|296260218|gb|EFH07065.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296430412|gb|EFH16254.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 135 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ GM+QE + E + ++ Q + +E + + +S + + Sbjct: 1 MEIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIINVIELSNLYSISLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + N V Sbjct: 61 LLKGDEKMIEHLEESTNVV 79 >gi|134098587|ref|YP_001104248.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133911210|emb|CAM01323.1| possible DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 186 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P + + +R R +G+S +L + GI + + E G L Sbjct: 1 MSTTESTPLEI---ISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLW 57 Query: 61 HISEVLESPISFFFD 75 ++ L P S D Sbjct: 58 ALAVALGVPFSRLVD 72 >gi|159043954|ref|YP_001532748.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911714|gb|ABV93147.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 431 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P G RIR RR L + Q L +GI+ + E R+G L +++ L Sbjct: 2 PQSALTGSRIRERRQSLRIKQADLARQVGISASYLNLIEHNRRRIGGKVLVKLAQALRVD 61 Query: 70 ISFFFDVSPTVCSDISSEE 88 I+ + + E Sbjct: 62 ITILTQGAEETLLEGLREA 80 >gi|28415739|gb|AAO40754.1| transcriptional regulator PlcR [Bacillus cereus] Length = 285 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSGIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|37650618|emb|CAE46900.1| transcriptional regulator [Bacillus thuringiensis] Length = 285 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGIEIKKIRAMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|293374855|ref|ZP_06621157.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325840161|ref|ZP_08166969.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|292646524|gb|EFF64532.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325490400|gb|EGC92723.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 356 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++N+GK I R ++QE+L +G++ V K+E + + L I+ + I Sbjct: 1 MNLNIGKVIYELRKKAKVTQEQLANAVGVSVPAVSKWENNTSYPDITLLPAIARYFNTSI 60 Query: 71 S 71 Sbjct: 61 D 61 >gi|238922027|ref|YP_002935541.1| hypothetical protein EUBELI_20262 [Eubacterium eligens ATCC 27750] gi|238873699|gb|ACR73407.1| Hypothetical protein EUBELI_20262 [Eubacterium eligens ATCC 27750] Length = 135 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPIS 71 + +G+R++ +R +S E + + LG++ V +YE + ++ S + + VL + + Sbjct: 1 MELGQRLKAKRKEQKISAEYMAKELGVSVSTVYRYEDSSIVKIPVSTFEKMCNVLGTTPA 60 Query: 72 FFFDVSPTVCSDISSEENNVM-DFISTPDGLQ 102 P + D S + N + F + ++ Sbjct: 61 EMMGNVPEMSHDKSDDTNKLPGTFEDPKEAME 92 >gi|228986400|ref|ZP_04146536.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773221|gb|EEM21651.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 374 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNVSID 62 >gi|227873856|ref|ZP_03992078.1| helix-turn-helix motif protein [Oribacterium sinus F0268] gi|227840282|gb|EEJ50690.1| helix-turn-helix motif protein [Oribacterium sinus F0268] Length = 331 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 5/93 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE L E L ++ Q + K+E + +++ +SEV + Sbjct: 6 KIIELRKKNGWSQEDLAEKLDVSRQSISKWEGAQSIPDMNKILKLSEVFSVSTDYLLKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPD---GLQLNRYF 107 + D E V S + ++ F Sbjct: 66 IEL--DSPGEAPKVDTESSLKEVSVSMEEANAF 96 >gi|310819908|ref|YP_003952266.1| phage-like DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309392980|gb|ADO70439.1| Phage-like DNA-binding protein [Stigmatella aurantiaca DW4/3-1] Length = 401 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+ R+ G+ L E + I+ + YEKG + A L+ + + L+ P +F Sbjct: 8 FIGSRLVEARLERGIPVRALAERVEISVPAIYGYEKGASSPRADVLRRLCDALDVPERYF 67 >gi|304560689|gb|ADM43352.1| P22 repressor protein c2 [Edwardsiella tarda FL6-60] Length = 216 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI RR L +SQ L + +G++ + ++E+ L +++E L+ + + Sbjct: 7 GYRIHKRRKELKLSQVSLSKAVGVSNVAISQWERDETSPRGDALLNLAEALQCSAEYLVN 66 Query: 76 VSPTVCS 82 + Sbjct: 67 GGDVDHN 73 >gi|291537564|emb|CBL10676.1| Helix-turn-helix [Roseburia intestinalis M50/1] gi|291560441|emb|CBL39241.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] Length = 209 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDKRE 85 >gi|239502087|ref|ZP_04661397.1| hypothetical protein AbauAB_07212 [Acinetobacter baumannii AB900] Length = 356 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 19 IRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+ R + GMSQ +L + +G IT + K EKG + +I++ L P FF Sbjct: 9 LRIARDLRGMSQTELVQKMGNITQAALSKIEKGDIKPSDETKFNIAKTLNFPERFF 64 >gi|254441108|ref|ZP_05054601.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] gi|198251186|gb|EDY75501.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] Length = 427 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 11/119 (9%) Query: 12 DINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D + G R+R RR+ LG+ Q + + GI+ + E R+G L+ ++ VLE + Sbjct: 3 DRIITGTRVRNRRIDLGLRQVNVAKATGISGSYLNLIEHNRRRIGGKLLRDLARVLEIDV 62 Query: 71 SFFFD-----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIEL 122 + D + + ++ ++ + T L F R++I +L Sbjct: 63 ALLGDEVGDAILGPLKEAAAAFPGASVEDLRTK---DLVERFPGWAALIAAQRRRITQL 118 >gi|168998508|ref|YP_001687776.1| putative regulatory protein [Staphylococcus aureus] Length = 113 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ +R + G SQE+L L ++ Q V K+E N L +S++ + Sbjct: 7 IKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLIKGD 65 >gi|28209943|ref|NP_780887.1| transcriptional regulator [Clostridium tetani E88] gi|28202378|gb|AAO34824.1| predicted transcriptional regulator [Clostridium tetani E88] Length = 219 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES---PIS 71 VG+ I+ R+ MSQ++LG+ +G++ + + E G + + + I ++L I+ Sbjct: 4 VGRNIKTYRLEANMSQKQLGKKIGVSENFINEIETGKRIINENLIDRIGKILNKDLNDIT 63 Query: 72 FFFDVSPTVCSD 83 F++ + Sbjct: 64 MFYEDMKDEKEN 75 >gi|32470379|ref|NP_863294.1| hypothetical protein MWP024 [Staphylococcus aureus] gi|49398102|ref|YP_031701.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253730993|ref|ZP_04865158.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208875|ref|ZP_06925281.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913080|ref|ZP_07130516.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|21205830|dbj|BAB96521.1| truncated conserved hypothetical protein [Staphylococcus aureus] gi|49168433|emb|CAG43234.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253725270|gb|EES93999.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|270055309|gb|ACZ58802.1| hypothetical protein SAP032A_013 [Staphylococcus aureus] gi|270055397|gb|ACZ58890.1| hypothetical protein SAP037A_010 [Staphylococcus aureus] gi|270269036|gb|ACZ66028.1| hypothetical protein SAP111A_016 [Staphylococcus aureus] gi|270269153|gb|ACZ66145.1| hypothetical protein SAP043A_012 [Staphylococcus aureus] gi|270299957|gb|ACZ68763.1| hypothetical protein SAP072A_021 [Staphylococcus aureus] gi|281334960|gb|ADA62044.1| hypothetical protein SAP053A_001 [Staphylococcus aureus] gi|296886493|gb|EFH25420.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885633|gb|EFK80842.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|302334349|gb|ADL24541.1| putative bacteriophage CI repressor [Staphylococcus aureus subsp. aureus JKD6159] gi|304388021|gb|ADM29122.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] Length = 113 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ +R + G SQE+L L ++ Q V K+E N L +S++ + Sbjct: 7 IKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLIKGD 65 >gi|163939160|ref|YP_001644044.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861357|gb|ABY42416.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 71 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKAFQTTIEHVF 60 >gi|83859650|ref|ZP_00953170.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83852009|gb|EAP89863.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 66 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 22/61 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R G SQ L + L ++ Q V E G I+ V PI FD Sbjct: 5 IKELRADRGWSQAALADKLDVSRQTVISIENGKYDPSLPLAFRIARVFGLPIETIFDDEN 64 Query: 79 T 79 Sbjct: 65 A 65 >gi|289579505|ref|YP_003478132.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289529218|gb|ADD03570.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 319 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I++G +I+ R+ +SQ +L + + + E G +L +I+E LE P+ Sbjct: 1 MNISIGTKIKSLRLQKKLSQSELCGNF-MNRVVLSRIENGKALPSLEQLIYIAEKLEVPV 59 Query: 71 SFFFDVSPTVC 81 +FF Sbjct: 60 GYFFSDLKDTS 70 >gi|255103192|ref|ZP_05332169.1| putative prophage LambdaCh01, repressor protein [Clostridium difficile QCD-63q42] Length = 103 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G S +++GE LG+ + +Q YE ++ L +S + I + + Sbjct: 2 NRLRELRKEKGYSTQQVGELLGVHYVTIQNYETNRRKIDNETLIKLSNIYNVSIDYILCL 61 Query: 77 SPTVCSDISSEEN 89 + + EE Sbjct: 62 TDNRENIQLEEEE 74 >gi|218695133|ref|YP_002402800.1| transcriptional repressor DicA [Escherichia coli 55989] gi|253773470|ref|YP_003036301.1| transcriptional repressor DicA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161633|ref|YP_003044741.1| transcriptional repressor DicA [Escherichia coli B str. REL606] gi|297519572|ref|ZP_06937958.1| transcriptional repressor DicA [Escherichia coli OP50] gi|301018731|ref|ZP_07183033.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|331668029|ref|ZP_08368884.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli TA271] gi|218351865|emb|CAU97588.1| HTH-type transcriptional regulator dicA (Repressor protein of division inhibition gene dicA) of prophage [Escherichia coli 55989] gi|242377304|emb|CAQ32048.1| ybl80 [Escherichia coli BL21(DE3)] gi|253324514|gb|ACT29116.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973534|gb|ACT39205.1| prophage CP-9330 DicA-like protein [Escherichia coli B str. REL606] gi|253977729|gb|ACT43399.1| prophage CP-9330 DicA-like protein [Escherichia coli BL21(DE3)] gi|300399570|gb|EFJ83108.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|312946171|gb|ADR26998.1| transcriptional repressor DicA [Escherichia coli O83:H1 str. NRG 857C] gi|323947994|gb|EGB43988.1| helix-turn-helix protein [Escherichia coli H120] gi|331064771|gb|EGI36675.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli TA271] Length = 135 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 48/113 (42%), Gaps = 3/113 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+ RR L ++Q + G+ + ++E+ + RL +++ L+ ++ Sbjct: 4 RTLGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQPVGKRLFALADALKCSPTW 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + E + + TP+ +L F + + ++ ++ +R+ Sbjct: 64 LMFGDEDKAPVPAQELHVETEL--TPNHKELIELFDALPSSE-QEALLSEMRA 113 >gi|220904000|ref|YP_002479312.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868299|gb|ACL48634.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R RR LGM ++ + +G++ +QKYE G +++ L+ + + Sbjct: 15 QRLRQRREELGMHKQDMAARVGVSLTTIQKYENG-QMPKGEYAVRLADTLDCSLDWLLAG 73 Query: 77 SPTVCS 82 Sbjct: 74 KGAADG 79 >gi|146318119|ref|YP_001197831.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320301|ref|YP_001200012.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253753209|ref|YP_003026349.1| DNA-binding protein [Streptococcus suis P1/7] gi|253755032|ref|YP_003028172.1| DNA-binding protein [Streptococcus suis BM407] gi|145688925|gb|ABP89431.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|145691107|gb|ABP91612.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|251817496|emb|CAZ55238.1| putative DNA-binding protein [Streptococcus suis BM407] gi|251819454|emb|CAR44956.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|292557878|gb|ADE30879.1| transcriptional regulator [Streptococcus suis GZ1] gi|319757590|gb|ADV69532.1| transcriptional regulator [Streptococcus suis JS14] Length = 384 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 17/135 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R++ G+++ L L +T Q + ++E GV ++ + + +F Sbjct: 4 GSRLEELRLLNGLTRADLARELEVTEQAIWQFETGVTLPKMKNKIAMARFFQVEVDYFDA 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDG-------------LQLNRYFIQIDDVKVRQKIIEL 122 V +S D + + + F+ I + Q I +L Sbjct: 64 VDKNGSFSLSRIAFRNADLEAKKNIHIQMVYLEKMNQMIDYLENFVSIPN----QIIYQL 119 Query: 123 VRSIVSSEKKYRTIE 137 V SI +++ ++E Sbjct: 120 VDSIEQKLQQHESLE 134 >gi|21219711|ref|NP_625490.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|6468452|emb|CAB61612.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 191 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+ V VG R+R R ++ L E GI+ + + E G+ R L I+ Sbjct: 3 TPDDVLAGVGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAH 62 Query: 67 ESPISFFFDVSP 78 + P+ P Sbjct: 63 QVPLDELVGAPP 74 >gi|322378022|ref|ZP_08052509.1| transcriptional regulator [Streptococcus sp. M334] gi|321281004|gb|EFX58017.1| transcriptional regulator [Streptococcus sp. M334] Length = 305 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +GKRIR R G+S+E G+ +T +Q+ + E G N ++L +I+++L PI Sbjct: 8 NLEIGKRIRTLRTEKGLSREAFCGDEKELTVRQLGRIETGNNLPSLAKLDYIAKILGVPI 67 Query: 71 SFFFD 75 S D Sbjct: 68 SQLID 72 >gi|260597879|ref|YP_003210450.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] gi|260217056|emb|CBA30782.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] Length = 191 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 I + ++ +G+RIR+ R G S +L E G++ + K E+G + A+ L +S Sbjct: 2 NNIIDTLNQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSG 61 Query: 65 VLESPIS 71 L +S Sbjct: 62 ALGLSMS 68 >gi|257074512|ref|YP_003162909.1| transcriptional regulator, XRE family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048733|gb|ACV37918.1| transcriptional regulator, XRE family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 108 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G+++R R G++ E+ E +G + V + E K R A R+ +++VL F Sbjct: 4 LGEKVRALRKKAGLTLEQFAEQIGASKSSVWELENKEKARPSADRIHEVAKVLGVTPEFL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + S ++E + S +G+ Sbjct: 64 MNDDVAEPSIDVADEAFFRKYQSLDNGV 91 >gi|258517274|ref|YP_003193496.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780979|gb|ACV64873.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 170 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R++ R LG+SQ+ GECLGI+ + + + EK ++H+ + S+ Sbjct: 1 MYVGVRVQKLRKHLGLSQKDFGECLGISQKHISQIEKDTREPSEQLIKHLCLRYNTSESW 60 >gi|229056996|ref|ZP_04196390.1| Helix-turn-helix repressor protein [Bacillus cereus AH603] gi|228720273|gb|EEL71849.1| Helix-turn-helix repressor protein [Bacillus cereus AH603] Length = 71 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKAFQTTIEHVF 60 >gi|326781392|ref|ZP_08240657.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326661725|gb|EGE46571.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 203 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ + Sbjct: 8 LDSLVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSL 67 Query: 71 SFFFDVSPT 79 + + Sbjct: 68 DQLVETASD 76 >gi|291544051|emb|CBL17160.1| Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Ruminococcus sp. 18P13] Length = 770 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + + V +RIR R +G+S E++ + ++ ++ + E G + + + ++ Sbjct: 4 NMDHAI-KEVAERIRAVREDVGLSVEEMAKRTDVSVEEYKALEAGQSDFSFTFIYKCAKA 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ + + + I +G + ++ + R KI E Sbjct: 63 CGVEITDVMEGESPKVTSYTVTRAGKGLPIVRREGF----AYYRLA-PQFRHKISE 113 >gi|239617008|ref|YP_002940330.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] gi|239505839|gb|ACR79326.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] Length = 69 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 19 IRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R+ G ++QE+L +G+T Q + EKG I++VL + F++ Sbjct: 5 IKKVRITKGEITQEELARRVGVTRQTIIYIEKGKFNPSVKLALKIAKVLGCSVEELFELE 64 Query: 78 PT 79 Sbjct: 65 EG 66 >gi|52081992|ref|YP_080783.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580] gi|52787379|ref|YP_093208.1| Slr [Bacillus licheniformis ATCC 14580] gi|319647856|ref|ZP_08002074.1| slr protein [Bacillus sp. BT1B_CT2] gi|52005203|gb|AAU25145.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580] gi|52349881|gb|AAU42515.1| Slr [Bacillus licheniformis ATCC 14580] gi|317390197|gb|EFV71006.1| slr protein [Bacillus sp. BT1B_CT2] Length = 152 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+ IR+ R G S +L + G++ + K E+GV+R L+ IS L+ + Sbjct: 2 IGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVHRNPSVEFLKKISRALKVELKEL 61 Query: 74 FDVSPTVCSDISSEEN 89 FD + E+ Sbjct: 62 FDTEVILYRRTEQEDE 77 >gi|88799578|ref|ZP_01115154.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] gi|88777663|gb|EAR08862.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] Length = 181 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 14/108 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVGKR++ R G+SQ +L + +G+T + EK S LQ + + + Sbjct: 1 MNVGKRLQEVRKKAGISQRELAKRVGVTNSTISMIEKNNVSPSVSSLQKVLSGMSMTLLE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 FF+ +DI + N D F + +VR++++ Sbjct: 61 FFEAED---NDIYVPQINYTD-----------DDFQDVSSSQVRRRLL 94 >gi|295108102|emb|CBL22055.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 174 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + N+ K + R +SQE+ E +G+T Q V ++E GV+ + L ISE + P+ Sbjct: 40 NQNIAKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFDIPVD 99 >gi|239820607|ref|YP_002947792.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805460|gb|ACS22526.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ RM +S L + GI+ + + E+G+ L+ ++ L P S FF Sbjct: 6 IGAQVKALRMAADVSGGALAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASRFF 65 >gi|126669228|ref|ZP_01740140.1| probable transcriptional regulator [Marinobacter sp. ELB17] gi|126626309|gb|EAZ96991.1| probable transcriptional regulator [Marinobacter sp. ELB17] Length = 237 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N V + +G+R++ R+ GMSQ KLG +T + E ++ +S ++ Sbjct: 1 NLQNEVSMALGQRLKEVRVQRGMSQAKLGALADLTQAAIGALESRDSK-HSSMALQLARA 59 Query: 66 LESPISFFFDVS-PTVCSDISSE 87 L + + P D E Sbjct: 60 LHVSVDWLVTGEGPKSVPDADGE 82 >gi|157370727|ref|YP_001478716.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157322491|gb|ABV41588.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 189 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R LG+S +L GI + + E G L ++ L+ P+S Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAMALDVPVS 71 >gi|152986025|ref|YP_001346033.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961183|gb|ABR83208.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 184 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R GM+ + L + + + V + E+G++R L IS+VL P ++FF Sbjct: 15 VRELRKRKGMTLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVPATYFFCSPK 74 Query: 79 TVCSDISSEENN 90 T S + + Sbjct: 75 TQASPWVTRPDE 86 >gi|260888022|ref|ZP_05899285.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330838504|ref|YP_004413084.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260862273|gb|EEX76773.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329746268|gb|AEB99624.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 202 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ R ++Q +L E L I+ Q+ +YE G++ LQ +S E Sbjct: 9 KLKYLRKKANLTQVQLAEMLHISQAQISRYETGLDEPSEDCLQALSSAFEID 60 Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +R+R R G SQ+ + LGI+ + E G +Q + ++ Sbjct: 89 RRLRAIRQYHGKSQKDFAQFLGISQSLISALEIGKATPDLVLIQKLGKM 137 >gi|229000137|ref|ZP_04159707.1| hypothetical protein bmyco0003_46900 [Bacillus mycoides Rock3-17] gi|229007658|ref|ZP_04165251.1| hypothetical protein bmyco0002_45370 [Bacillus mycoides Rock1-4] gi|228753609|gb|EEM03054.1| hypothetical protein bmyco0002_45370 [Bacillus mycoides Rock1-4] gi|228759674|gb|EEM08650.1| hypothetical protein bmyco0003_46900 [Bacillus mycoides Rock3-17] Length = 296 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RM+ G++Q++L + + +V + E G LQ I+ L PI F+ Sbjct: 6 LGAEIKKIRMLRGLTQKQLSDNI-CHQSEVSRIEAGSVYPSMDILQGIAAKLRVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 +V + + + + +S Sbjct: 65 EVLIYSDIERKKQFKDQIQLLSKK 88 >gi|254831247|ref|ZP_05235902.1| hypothetical protein Lmon1_07812 [Listeria monocytogenes 10403S] Length = 158 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G SQ KL + LG + QV YE+G L I+E + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 +D + +D +T + ++ +I Sbjct: 64 DDNNLADTIAAH---IDSNATEEDIKEILAYI 92 >gi|154505077|ref|ZP_02041815.1| hypothetical protein RUMGNA_02587 [Ruminococcus gnavus ATCC 29149] gi|153794556|gb|EDN76976.1| hypothetical protein RUMGNA_02587 [Ruminococcus gnavus ATCC 29149] Length = 209 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDKRE 85 >gi|241662630|ref|YP_002980990.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240864657|gb|ACS62318.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 107 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 38/96 (39%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K NP+ +GKR+++ R+ ++QE+L + V E+GV L ++ Sbjct: 9 ASKDKRNPIATAIGKRVKVCRVEAELTQEQLAHEALVDRSYVSSIERGVANPSIETLANL 68 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 + +S F+ +N + + Sbjct: 69 CYCMGITLSRLFEPLAISLKPTGERRSNAHVPVGSR 104 >gi|73697814|gb|AAZ81513.1| PlcR [Bacillus weihenstephanensis] gi|83316468|gb|ABC02408.1| PlcR [Bacillus weihenstephanensis] Length = 285 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRGMRGLTQKQLSDNV-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|47564876|ref|ZP_00235920.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228984110|ref|ZP_04144296.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47558249|gb|EAL16573.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228775638|gb|EEM24018.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 117 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 6/89 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ R ++QE+LG +G++ + +EKG G L+ I++ + + Sbjct: 2 IGEIIKKLRKEKNITQEQLGAAVGVSKMAISYFEKGKKAPGRETLEKIADFFNTTTDYLL 61 Query: 75 ------DVSPTVCSDISSEENNVMDFIST 97 +++ ++ E NN++ I T Sbjct: 62 GRSDDPELTEFESRVVTEEGNNIIKLIET 90 >gi|311895251|dbj|BAJ27659.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 111 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R RR LG++ +L LG+ V ++E G SR+ ++ L P Sbjct: 6 RMRDRRKRLGLTLAQLAVPLGVHEATVGRWEGGAVEPSVSRVVALAAALRVPFEALLKPV 65 Query: 78 PTVCSDISSEENNV 91 P + S V Sbjct: 66 PASVRRVYSAAEAV 79 >gi|297156604|gb|ADI06316.1| UDP-N-acetylglucosamine transferase [Streptomyces bingchenggensis BCW-1] Length = 509 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK IR R G +Q +L E L + V + E+G + + I E L+S I Sbjct: 9 IGKLIRDARQHRGWTQAQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|291459407|ref|ZP_06598797.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418006|gb|EFE91725.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 173 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R ++QE+L E L ++ + V ++E G N L I++ E I Sbjct: 6 IGALLKELRRQRAVTQEQLAEMLNVSRRTVSRWETGSNMPDLDILIEIADYYEIDIRELL 65 Query: 75 DVS 77 D Sbjct: 66 DGE 68 >gi|256394949|ref|YP_003116513.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361175|gb|ACU74672.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 193 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V +RIR R+ G + + L ++ + + E G R+ +L I+ L + Sbjct: 6 DMDALVRRRIRTLRLARGWTLDSLASRCDLSPSNLSRIETGQRRIALDQLVPIARALGTT 65 Query: 70 ISFFFDVSPTVCSDISSEE 88 + + I E Sbjct: 66 LDQLVEPGDDTGVVIRPEP 84 >gi|225377603|ref|ZP_03754824.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] gi|225210579|gb|EEG92933.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] Length = 156 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+G++I+ R G SQE+L E L ++ Q + K+E L IS+ + Sbjct: 12 MNLGEKIKECRKQAGFSQEQLAERLNVSRQAITKWETNKGIPDIVNLIAISDEFGLSLD 70 >gi|167766468|ref|ZP_02438521.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1] gi|167711877|gb|EDS22456.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1] Length = 123 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+R+R +R +SQE L E +GI+ V + E G + + EVL + + Sbjct: 18 IQLGERVRQKRKDCHLSQETLAEKVGISVNTVSRIEGGQAAISIEIFVKLVEVLGADANE 77 Query: 73 FFDVSPTVCSDISSE 87 +P + + + Sbjct: 78 LLGKNPEGDRNPAHK 92 >gi|73697817|gb|AAZ81515.1| PlcR [Bacillus weihenstephanensis] Length = 285 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRGMRGLTQKQLSDNV-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|323351737|ref|ZP_08087391.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322122223|gb|EFX93949.1| transcriptional regulator [Streptococcus sanguinis VMC66] Length = 136 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K I + R +SQEKL E +G++ Q + K+E G + +++ + + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLD 58 >gi|227494440|ref|ZP_03924756.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] gi|226832174|gb|EEH64557.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] Length = 354 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G++QE+L LG++ Q + K+E +L I ++ + Sbjct: 29 ENLQHLRSTRGLTQERLAVLLGVSRQAISKWESDRAYPEMDKLLTICDLFGCTLDELVTG 88 Query: 77 SPTVCSDISSEENNVMDFIS 96 + E+ V +S Sbjct: 89 DLRTTDADTLEDPLVSQAVS 108 >gi|205371967|ref|ZP_03224785.1| Xre family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 69 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G+RIR R + G +QE + LG++ + + E+G A + ++EVL P Sbjct: 7 GRRIRAYRKLKGFTQEDFAKELGVSVSVLGEVERGNRMPSAELIHKVTEVLNIP 60 >gi|83853906|gb|ABC47902.1| RstR-like protein [Vibrio phage CTX] Length = 114 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 43/82 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R+ + QE + + LGIT Q + K+EKG S+L+ +SE+ P D + Sbjct: 5 KIKQCRIEKNLKQEDVAKALGITTQTLLKWEKGDYEPKVSQLKKLSEIYGVPTCELIDDN 64 Query: 78 PTVCSDISSEENNVMDFISTPD 99 +V S+ + +++ ++ + Sbjct: 65 ESVSSEKMRAKLYLLEQLNEEE 86 >gi|163940620|ref|YP_001645504.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862817|gb|ABY43876.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 422 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S L+ +S+ L F Sbjct: 1 MEIGERIRQVRMHKGLTQGELVSEI-CSITYLSRIESGKIKPSSSFLKQVSKKLGVDCDF 59 Query: 73 FFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQ 109 D + E D I T L L +++ Sbjct: 60 LIDGNYEEIKLTILEICNKYKKDKIITEAELSLLELYVR 98 >gi|329115906|ref|ZP_08244623.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906311|gb|EGE53225.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 135 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 33/71 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q+ LG +G++ + K+EK S++ ++ + I + + Sbjct: 7 RLKELRKEKKITQQDLGNAIGVSRVTITKWEKEYIEPNISQITDLAIFFDVSIDYLTGKT 66 Query: 78 PTVCSDISSEE 88 S +++E Sbjct: 67 DLDYSKLNAES 77 >gi|269216832|ref|ZP_06160686.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269129639|gb|EEZ60723.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 200 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + KR+ R G+SQE++ + ++ Q V K+E + L ++ + + Sbjct: 3 IEIAKRLYEYRRASGLSQEQVAAKISVSRQAVSKWECAESSPDTDNLIALAMLYGVTVDE 62 Query: 73 FFDVSPTVCSDISSE 87 P + +++ Sbjct: 63 LLFADPEKTAAETTK 77 >gi|311739938|ref|ZP_07713772.1| possible DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305011|gb|EFQ81080.1| possible DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 124 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA------SRLQHISEVLESPI 70 +++R R G+SQ+ L E G++ Q+ E+ N V A S + ++ LE P Sbjct: 17 QQLRRVRKRRGISQQALAEISGVSRSQISNLERNENGVHAMADPQLSTVYKLALALEIPP 76 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + V ++ Sbjct: 77 AVLLPAGGDVVEGHLTDSAVAAA 99 >gi|227505314|ref|ZP_03935363.1| HTH_3 family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227198016|gb|EEI78064.1| HTH_3 family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 86 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK +P+ R+RL R+ MS+ +L + +G+ Q + E+G + Sbjct: 1 MSPKKKPSSPIF----NRVRLLRVERDMSRAQLADAVGVNPQSIGALERGDHSPSLDLAF 56 Query: 61 HISEVLESPISFFF 74 I EV + P+ F Sbjct: 57 SICEVFDLPVEAVF 70 >gi|126698607|ref|YP_001087504.1| putative transcriptional regulator [Clostridium difficile 630] gi|254974574|ref|ZP_05271046.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091964|ref|ZP_05321442.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100060|ref|ZP_05329037.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305949|ref|ZP_05350121.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313699|ref|ZP_05355282.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516381|ref|ZP_05384057.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649481|ref|ZP_05396383.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655000|ref|ZP_05400409.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|260682647|ref|YP_003213932.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686247|ref|YP_003217380.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296449749|ref|ZP_06891519.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296877934|ref|ZP_06901953.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|115250044|emb|CAJ67864.1| putative transcriptional regulator, HTH [Clostridium difficile] gi|260208810|emb|CBA61711.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212263|emb|CBE02999.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296261473|gb|EFH08298.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296431002|gb|EFH16830.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 179 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 35/76 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R ++QE+L ++ + + E + + L I E+L + + Sbjct: 1 MDIGEKIKRLRTEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLRE 60 Query: 73 FFDVSPTVCSDISSEE 88 FF+ + E+ Sbjct: 61 FFNEIDDERISFTKED 76 >gi|78043854|ref|YP_360727.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995969|gb|ABB14868.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 107 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R MS+++L + L I++ + KYE + L+ I++ I + + Sbjct: 5 NKIKKLREERKMSRKELADKLQISYWALSKYENNERTPDITLLRKIAQEFGVSIEYLAGL 64 Query: 77 SPT 79 S Sbjct: 65 SDE 67 >gi|117924798|ref|YP_865415.1| phage lambda repressor protein. serine peptidase. MEROPS family S24 [Magnetococcus sp. MC-1] gi|117608554|gb|ABK44009.1| phage repressor protein, Serine peptidase, MEROPS family S24 [Magnetococcus sp. MC-1] Length = 220 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR R G +Q++L + + I+ + K E G +R + R I+ + Sbjct: 6 RIRTAREYAGFTQKELADRVDISQTAIHKLECGRSR-SSRRTVAIALACGVNPIWL 60 >gi|323358883|ref|YP_004225279.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275254|dbj|BAJ75399.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 474 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R G++ + L +G Q+ E G + LQ I+ LE + Sbjct: 4 LTIGRRIRQLRTARGLTLDDLATAVGRAPSQMSMIENGRREAKLTLLQAIARALECKLDQ 63 Query: 73 FFDVSPTVCSDISS 86 D P Sbjct: 64 ILDAEPLDARSTLE 77 >gi|257452737|ref|ZP_05618036.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|257466598|ref|ZP_05630909.1| MerR family transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|315917753|ref|ZP_07913993.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|317059278|ref|ZP_07923763.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313684954|gb|EFS21789.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313691628|gb|EFS28463.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] Length = 182 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R +S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 1 MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60 Query: 73 FFDVSPTVCS 82 + + Sbjct: 61 LIEDDEIQKN 70 >gi|256789205|ref|ZP_05527636.1| regulatory protein [Streptomyces lividans TK24] gi|289773098|ref|ZP_06532476.1| regulatory protein [Streptomyces lividans TK24] gi|289703297|gb|EFD70726.1| regulatory protein [Streptomyces lividans TK24] Length = 191 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+ V VG R+R R ++ L E GI+ + + E G+ R L I+ Sbjct: 3 TPDDVLAGVGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAH 62 Query: 67 ESPISFFFDVSP 78 + P+ P Sbjct: 63 QVPLDELVGAPP 74 >gi|253751308|ref|YP_003024449.1| DNA-binding protein [Streptococcus suis SC84] gi|251815597|emb|CAZ51181.1| putative DNA-binding protein [Streptococcus suis SC84] Length = 384 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 17/135 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R++ G+++ L L +T Q + ++E GV ++ + + +F Sbjct: 4 GSRLEELRLLNGLTRADLARELEVTEQAIWQFETGVTLPKMKNKIAMARFFQVEVDYFDA 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDG-------------LQLNRYFIQIDDVKVRQKIIEL 122 V +S D + + + F+ I + Q I +L Sbjct: 64 VDKNGSFSLSRIAFRNADLEAKKNIHIQMVYLEKMNQMIDYLENFVSIPN----QIIYQL 119 Query: 123 VRSIVSSEKKYRTIE 137 V SI +++ ++E Sbjct: 120 VDSIEQKLQQHESLE 134 >gi|254382948|ref|ZP_04998303.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194341848|gb|EDX22814.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 411 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 5/102 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI---SEVLESPIS 71 +G+R+R +R+ +GM+Q L LG T V K EKG R+ R I + L + Sbjct: 11 IGQRVRRQRLSVGMTQADLAAALGRTQGWVSKLEKG--RIELDRAGLINAVAAALHCHPN 68 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + T + + + + L F I Sbjct: 69 TLIERPYTGGGAETKWQVSAASILRELRRYDLAPVFDGIPRP 110 >gi|169342435|ref|ZP_02863498.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169299434|gb|EDS81499.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 330 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R +SQ +L E LG+ + YE+ L +S+++ I ++ Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNRSIDSLLGLN 71 Query: 78 PTVC--SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVRSIVSSEKKY 133 + +D+++ + + FI + N+ F +++ K+R + EL R+ +E Sbjct: 72 HSTENTNDLNNSDLSKKIFILNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDI 131 Query: 134 RTIEEECMV 142 + +E Sbjct: 132 KLFQELSKE 140 >gi|59801958|ref|YP_208670.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|240014865|ref|ZP_04721778.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240017310|ref|ZP_04723850.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|240081048|ref|ZP_04725591.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA19] gi|240113258|ref|ZP_04727748.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae MS11] gi|240115331|ref|ZP_04729393.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID18] gi|240118675|ref|ZP_04732737.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240121954|ref|ZP_04734916.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|240124219|ref|ZP_04737175.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae PID332] gi|240128889|ref|ZP_04741550.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae SK-93-1035] gi|260440172|ref|ZP_05793988.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae DGI2] gi|268597160|ref|ZP_06131327.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599338|ref|ZP_06133505.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268601016|ref|ZP_06135183.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268604387|ref|ZP_06138554.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268682845|ref|ZP_06149707.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268687271|ref|ZP_06154133.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043464|ref|ZP_06569180.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398766|ref|ZP_06642935.1| phage repressor protein [Neisseria gonorrhoeae F62] gi|59718853|gb|AAW90258.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|268550948|gb|EEZ45967.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583469|gb|EEZ48145.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268585147|gb|EEZ49823.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268588518|gb|EEZ53194.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268623129|gb|EEZ55529.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268627555|gb|EEZ59955.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291011927|gb|EFE03916.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610823|gb|EFF39929.1| phage repressor protein [Neisseria gonorrhoeae F62] Length = 251 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 17 KRI-RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 KRI ++ L ++Q KL E +G+T V Y G N + AS +++L+ P+S F Sbjct: 18 KRIFNSKKEELKLTQYKLAEAVGVTQSAVNHYLNGTNALNASIASQFAKILQIPVSDF 75 >gi|89896477|ref|YP_519964.1| hypothetical protein DSY3731 [Desulfitobacterium hafniense Y51] gi|89335925|dbj|BAE85520.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 373 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 19/135 (14%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +R G++Q++L +G++ V K+E G + + L ++ I SP + Sbjct: 17 AKRREKGITQDELAAYIGVSKASVSKWETGQSYPDITFLPLLAAYFNISIDELMSYSPQM 76 Query: 81 CSDISSE--ENNVMDFISTP------DGLQLNRYFIQIDDVKVRQKIIELVR------SI 126 ++ DF S P + L + + +++LV+ + Sbjct: 77 ERSDIAKLYTRLAADFASRPFEDVIAECAALIKKYYSCFP-----LLVQLVKLYTNHFML 131 Query: 127 VSSEKKYRTIEEECM 141 ++++ + E + Sbjct: 132 AGTQERQEVLLNETV 146 >gi|86559618|ref|YP_473438.1| LexA repressor [Clostridium perfringens] gi|86475890|dbj|BAE79065.1| LexA repressor [Clostridium perfringens] Length = 330 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R +SQ +L E LG+ + YE+ L +S+++ I ++ Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNRSIDSLLGLN 71 Query: 78 PTVC--SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVRSIVSSEKKY 133 + +D+++ + + FI + N+ F +++ K+R + EL R+ +E Sbjct: 72 HSTENTNDLNNSDLSKKIFILNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDI 131 Query: 134 RTIEEECMV 142 + +E Sbjct: 132 KLFQELSKE 140 >gi|150015531|ref|YP_001307785.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901996|gb|ABR32829.1| putative transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 436 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L + IT Q+ E G + L+++++ L + + + Sbjct: 6 LGEKIKRRRKQLNMTLKDLAKD-RITPGQISLVESGRSNPSVDLLEYLADALNTNVEYLM 64 Query: 75 DVSPTVCSDIS 85 + + IS Sbjct: 65 ESEESQAEKIS 75 >gi|313206573|ref|YP_004045750.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312445889|gb|ADQ82244.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315023431|gb|EFT36439.1| helix-turn-helix domain protein [Riemerella anatipestifer RA-YM] gi|325335979|gb|ADZ12253.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 122 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G SQE + + L I+ + E +V RL I+E+LE+ I+ FF Sbjct: 4 IGVNIRRLRERKGFSQEYVAQELNISQASYARLENENTKVTVERLSKIAEILETDITEFF 63 Query: 75 D 75 + Sbjct: 64 N 64 >gi|312142963|ref|YP_003994409.1| helix-turn-helix domain protein [Halanaerobium sp. 'sapolanicus'] gi|311903614|gb|ADQ14055.1| helix-turn-helix domain protein [Halanaerobium sp. 'sapolanicus'] Length = 112 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KR++ R + SQ+++ +G Q+ YE G ++ S L S + I +F Sbjct: 7 IAKRLKAARKEMNYSQQEVANFIGKKRSQISYYETGARKINLSLLNQFSNLYGKSIEYFI 66 Query: 75 -DVSPTVCSDISSEENNVMD 93 + +I+ ++ Sbjct: 67 GEREEEDKLEIAHRSTDIAQ 86 >gi|257064611|ref|YP_003144283.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792264|gb|ACV22934.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 141 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R G++Q++L +G+T V+ YE G+ +L +++ + Sbjct: 3 VGERIRALRRSAGLTQKELAASIGLTESAVRNYELGLRTPSDDQLAAMADSIGVAPEALM 62 Query: 75 DV 76 D+ Sbjct: 63 DI 64 >gi|261420641|ref|YP_003254323.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768311|ref|YP_004133812.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261377098|gb|ACX79841.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|317113177|gb|ADU95669.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 135 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 55/134 (41%), Gaps = 8/134 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ ++ R +QE+L E L ++ Q+ K+E G L+ + ++ F Sbjct: 3 NLGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADFL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T ++ E ++ + + L + + ++ + + L + + ++K+ Sbjct: 63 L-GGETRQRELLREVTDMYGTADVHETV-LAALDYLLHNQEMSEAMYALAK-LPDKKRKH 119 Query: 134 R-----TIEEECMV 142 TI +EC Sbjct: 120 VETMIMTIVKECSE 133 >gi|198276651|ref|ZP_03209182.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM 17135] gi|198270176|gb|EDY94446.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM 17135] Length = 192 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R +S ++L E G+T +QV + E+ ++ + L I+ L + F Sbjct: 7 IGEKIKSLRTNQEISIQELAERAGLTVEQVSRIEENIDIPSLAPLIKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 D + + + D I Sbjct: 67 DDQTSEAGPVICRKGEADDTIG 88 >gi|206564567|ref|YP_002235330.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] gi|198040607|emb|CAR56593.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] Length = 192 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 11/130 (8%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV + D + +G +IR R L + + GI+ + + E+G+ + L Sbjct: 1 MVPPTENSRSADAVALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSL 60 Query: 60 QHISEVLESPISFFFDVSPTVCS----------DISSEENNVMDFISTPDGLQLNRYFIQ 109 I+ L + +F D S + N + +G QL ++ Sbjct: 61 AGIAHALGVTVQYFVDTPSEERSVCRGDQLRFFGFADSTNLFARLTNVSEGRQLEAILVR 120 Query: 110 IDDVKVRQKI 119 + + R ++ Sbjct: 121 MPPGQKRSEV 130 >gi|111221785|ref|YP_712579.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111149317|emb|CAJ61003.1| putative DNA-binding protein [Frankia alni ACN14a] Length = 500 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 6/84 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R MSQ +L LGI+ + + E + L I+E FF Sbjct: 5 FVGTRLRELREERAMSQVELARLLGISPSYLNQIEHNSRPLTVPVLLRITEAFGVDAGFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 D++ V + +S Sbjct: 65 ------AAHDVTRLIAEVREVLSD 82 >gi|312794244|ref|YP_004027167.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181384|gb|ADQ41554.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 66 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R G+SQ+KL + + + E G++ L+ ++ LE P+ F Sbjct: 2 LGEKIKELRQKKGLSQQKLSKLANVPQSTIWYIENGISSPTLKTLEKLARALEVPVHEFV 61 Query: 75 D 75 D Sbjct: 62 D 62 >gi|226949453|ref|YP_002804544.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843380|gb|ACO86046.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 148 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q V K+E ++ + +SE+ + Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + D++ E V + Sbjct: 61 LI-GESHISGDVTGIEMIVDEI 81 >gi|212710579|ref|ZP_03318707.1| hypothetical protein PROVALCAL_01642 [Providencia alcalifaciens DSM 30120] gi|212686816|gb|EEB46344.1| hypothetical protein PROVALCAL_01642 [Providencia alcalifaciens DSM 30120] Length = 92 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R+ G+S ++L + ++ QQV +YE GVN++ +L I+ +LE I Sbjct: 11 LGNHLRKARVRKGLSGQELATIIQLSQQQVSRYELGVNKLSLDKLIEIAILLEMDIH--- 67 Query: 75 DVSPTVCSDISSEENNVMDFI 95 +++ + E+NN + + Sbjct: 68 EITTMIARQFEKEKNNSEEVM 88 >gi|209515409|ref|ZP_03264275.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209504129|gb|EEA04119.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 204 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 38/83 (45%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ +P +VG R+R R+ G+S +L G++ V + E+ L+ + + Sbjct: 9 KRAADPGHGDVGTRLRALRIAHGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQ 68 Query: 65 VLESPISFFFDVSPTVCSDISSE 87 LE P++ + V ++ + Sbjct: 69 ALEVPLTALLEEDDAVSDPVTGD 91 >gi|167768271|ref|ZP_02440324.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1] gi|167709795|gb|EDS20374.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1] Length = 84 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KRI++ R+ MSQE L + +G+T Q + E G I + L + F Sbjct: 24 KRIKIARLECDMSQEDLAKTVGVTRQTIGLIEAGNYNPTLKLCLAICKALNKTLDDLF 81 >gi|217958090|ref|YP_002336634.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|217067385|gb|ACJ81635.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|282765843|gb|ADA84966.1| helix-turn-helix domain protein [Bacillus phage 11143] Length = 139 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFD 75 K+++ R G+SQE+L L I + YE +R SRL I++ + F Sbjct: 5 KKLKELREGKGLSQEELALKLNIPRSSITHYENSDDRLPRKSRLLEIADFFNVSVDFLLS 64 Query: 76 VSPTVCSDISSEENNVM-DFISTPDGLQ 102 S EE ++ D T + L Sbjct: 65 DSKEEIQLSKKEERDIARDLERTLEQLD 92 >gi|218779200|ref|YP_002430518.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760584|gb|ACL03050.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 196 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N ++ + K + + R MSQ+ L + G++ + E G S + Sbjct: 1 MTKNDEVLQQTKYALAKNVAVGRKAHNMSQQALADASGVSKSTIAAIETGKGEPSLSTIV 60 Query: 61 HISEVLES-PISFFFDVS 77 I+ L+ P FFD S Sbjct: 61 AIACTLQCSPQMLFFDDS 78 >gi|21227029|ref|NP_632951.1| PbsX family transcriptional regulator [Methanosarcina mazei Go1] gi|20905349|gb|AAM30623.1| transcriptional regulator, PBSX family [Methanosarcina mazei Go1] Length = 67 Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R + ++QE L + +G+T Q + EKG ++ + + I F Sbjct: 3 NKIKVYRAMHDLTQENLADRVGVTRQTIHAIEKGKYDPSLDLAFKLARLFNANIEDIF 60 >gi|328477026|gb|EGF47309.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 106 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L S+E+L + + + QQV ++EKG++ +L IS+ LE + Sbjct: 3 IGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 75 DVSPTVCSDISSEEN--NVMDFIS 96 P + I ++N D++ Sbjct: 63 QSDPKLQKTIQIDKNAKEASDYLR 86 >gi|313668496|ref|YP_004048780.1| DNA-binding protein [Neisseria lactamica ST-640] gi|313005958|emb|CBN87415.1| putative DNA-binding protein [Neisseria lactamica 020-06] Length = 110 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 44/98 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P++ VG+ + R + G++Q +L E L ++ V + E+G + RL ++E+ Sbjct: 1 MKSPINQTVGRAMAKWRKVSGLTQAQLAERLNLSLDAVSRLERGNIALTVERLVELAEIF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + T D + +++ + + + L Sbjct: 61 GCETADLLGEGSTRVRDQAVRLESLLGRLDEEERVGLL 98 >gi|293402337|ref|ZP_06646474.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304184|gb|EFE45436.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 286 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I R ++Q +L E L IT + V K+E G + +S + + ++L ++ Sbjct: 14 GKFIARCRKEKKLTQAQLAERLSITDRAVSKWETGKSMPDSSIMLELCKLLGITVNELLS 73 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 + + + + + D Sbjct: 74 GEKVTMDSLERKADENLIALKRKD 97 >gi|228963418|ref|ZP_04124579.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228796312|gb|EEM43759.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 117 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+ ++ R ++QE+LGE L ++ Q+ YE + L IS + + Sbjct: 8 GQNLKKLRKSKDLTQEQLGEQLNLSRNQINNYENAMFEPSMETLLQISSFFDVSLD 63 >gi|227832086|ref|YP_002833793.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] gi|262184059|ref|ZP_06043480.1| putative transcriptional regulator, MerR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227453102|gb|ACP31855.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] Length = 468 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLKITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S + D + + Sbjct: 65 ------SRDDDSRLLAEIQDVVQDQE 84 >gi|160894096|ref|ZP_02074874.1| hypothetical protein CLOL250_01650 [Clostridium sp. L2-50] gi|156864129|gb|EDO57560.1| hypothetical protein CLOL250_01650 [Clostridium sp. L2-50] Length = 222 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I+ R L M+Q+ +GI + YE GV L I++ + + F Sbjct: 24 ISEKIKELRTDLKMNQKNFSAAIGIRQSTLSSYENGVVTPSNDVLLTIAQKFHVSLDWLF 83 Query: 75 DVSP 78 +S Sbjct: 84 GLSE 87 >gi|21910500|ref|NP_664768.1| hypothetical protein SpyM3_0964 [Streptococcus pyogenes MGAS315] gi|21910882|ref|NP_665150.1| hypothetical protein SpyM3_1346 [Streptococcus pyogenes MGAS315] gi|28876248|ref|NP_795443.1| hypothetical protein SpyM3_0964 [Streptococcus pyogenes phage 315.2] gi|28876428|ref|NP_795613.1| hypothetical protein SpyM3_1346 [Streptococcus pyogenes phage 315.5] gi|28895430|ref|NP_801780.1| hypothetical protein SPs0518 [Streptococcus pyogenes SSI-1] gi|28895801|ref|NP_802151.1| hypothetical protein SPs0889 [Streptococcus pyogenes SSI-1] gi|21904699|gb|AAM79571.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes MGAS315] gi|21905088|gb|AAM79953.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes MGAS315] gi|28810676|dbj|BAC63613.1| hypothetical protein (phage associated) [Streptococcus pyogenes SSI-1] gi|28811050|dbj|BAC63984.1| hypothetical protein (phage associated) [Streptococcus pyogenes SSI-1] Length = 104 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++Q+ L E + + ++ +Q++E + + + Q +++ + +++ Sbjct: 2 NRIKELRKEKGLTQQDLAEEIYVHYRTIQRWEN-EHIIALDQAQLLADHFDVSVAYLLGY 60 Query: 77 SPTVCSD 83 S T + Sbjct: 61 SDTTKDN 67 >gi|107100810|ref|ZP_01364728.1| hypothetical protein PaerPA_01001838 [Pseudomonas aeruginosa PACS2] gi|296390262|ref|ZP_06879737.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 185 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%) Query: 7 IPNPVDI-----NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +PNP + +V +R R+ G+SQE L ++ + + E G V S L Sbjct: 1 MPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDR 60 Query: 62 ISEVLESPISFFFDVSPTVCSDIS 85 I+ L F D+ +D S Sbjct: 61 IAAALGV---LFPDLVQAPATDRS 81 >gi|307129602|ref|YP_003881618.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527131|gb|ADM97061.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 89 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K + G+R++ R+ G+SQE + G+ + E+GV + Sbjct: 14 MLIGMKNTKDITARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIG 73 Query: 61 HISEVLESPISFFFD 75 I++ LE + FD Sbjct: 74 VIADGLEIQLQSLFD 88 >gi|257870115|ref|ZP_05649768.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] gi|257804279|gb|EEV33101.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] Length = 180 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRVQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFTILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEENN 90 FF + EE++ Sbjct: 61 FFRQENADHQVVYREEDS 78 >gi|238024352|ref|YP_002908584.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237879017|gb|ACR31349.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia glumae BGR1] Length = 204 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R+ G+S +L G++ V + E+ L+ + + L P+S Sbjct: 19 VGGRLRALRVEQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALSVPLSALL 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + ++ + V DF+ D L Sbjct: 79 ED------EGAASDPVVGDFVRKADERPL 101 >gi|296124304|ref|YP_003632082.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296016644|gb|ADG69883.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 380 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P+ ++R R++ G++Q++L E GI+ V E + Sbjct: 18 SYGTIMTYPISA---NQVRKFRLLAGLTQQQLAEQSGISRTAVTAIEGAKLVPSVAAALA 74 Query: 62 ISEVLESPISFFFDVSP 78 +S L + + FD SP Sbjct: 75 LSRTLGASVEDLFDSSP 91 >gi|56696154|ref|YP_166510.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677891|gb|AAV94557.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 130 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L LG+ + +E ++ A+RL ++ +L I + Sbjct: 16 GDRLAAAREASGMTQAQLARRLGVKKATINGWEDDLSEPRANRLSMLAGLLNVSIVWLIT 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++ + D + L+ R Sbjct: 76 GEGQGGEALNETDETARDMAALLTELRSLRA 106 >gi|85544221|pdb|2B5A|A Chain A, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544222|pdb|2B5A|B Chain B, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544223|pdb|2B5A|C Chain C, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544224|pdb|2B5A|D Chain D, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|311977251|gb|ADQ20505.1| C.BclI [Bacillus caldolyticus] Length = 77 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + G+ ++ R G+SQE+L + G+ + + E+G + + I L+ P Sbjct: 7 IKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPA 66 Query: 71 SFFF 74 S FF Sbjct: 67 STFF 70 >gi|325847068|ref|ZP_08169894.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481040|gb|EGC84085.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 132 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 ++ G ++R R ++Q++L + +G++ + + +YE G ++ ++ ++EVL++ Sbjct: 1 MSFGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTSHD 60 Query: 72 FFFDVSPTVCSDISSE 87 + D + Sbjct: 61 YLVTDEDNFILDAREK 76 >gi|169335030|ref|ZP_02862223.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] gi|169257768|gb|EDS71734.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] Length = 310 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R I +SQE+L E L ++ Q V K+E G + +L + ++ + + Sbjct: 9 NLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTSYPEMDKLLILCDIFSLNMDELVKGN 68 Query: 78 PTVCSDISSEENNVMD 93 ++ + E+ + + Sbjct: 69 ISLDDNSFKEDKALYE 84 >gi|170756150|ref|YP_001780099.1| hypothetical protein CLD_0298 [Clostridium botulinum B1 str. Okra] gi|169121362|gb|ACA45198.1| conserved domain protein [Clostridium botulinum B1 str. Okra] Length = 65 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K++++ R+ MSQE+L + +G+T Q + E G + I +VL ++ F Sbjct: 4 KKMKIARIECDMSQEQLADAIGVTRQTIGLIELGKYNPSLNLCIAICKVLNKTLNDLF 61 >gi|170754757|ref|YP_001781905.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119969|gb|ACA43805.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 78 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E G I++V I F F Sbjct: 3 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESE 66 >gi|154252262|ref|YP_001413086.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156212|gb|ABS63429.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 72 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG +R R+ G++QE+ E G + Q + E+G L ++ L Sbjct: 5 KTVGGNVRRIRLKKGLTQEQFAEISGFSQQYISGLEQGRRNPTVVTLYELATALGVS 61 >gi|324323883|gb|ADY24926.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 125 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D GK +R R G++ ++LG+ LG++ + +E G ++ I+E + Sbjct: 3 DNIFGKNLRNLRTQKGLTLKELGQELGVSGNTISGWELGNKEPNMDMIKVIAEFFTVSVD 62 Query: 72 FFFDVSPTVCSD 83 + D Sbjct: 63 YLLQHEVLESED 74 >gi|294633421|ref|ZP_06711980.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292831202|gb|EFF89552.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 181 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+R+R R G+S +L G+ + + E G L ++ L P+S Sbjct: 7 VGRRLRELRTARGLSLSELARRSGVGKGTLSELESGTRNPTLDTLYALTTALNRPLS 63 >gi|317053257|ref|YP_004119024.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952996|gb|ADU72468.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 157 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 1/82 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R R+ SQE+L E G++ + VQ+ E G +R G L ++ V +S Sbjct: 4 GNKFREYRLARAWSQEQLAEMAGLSTRTVQRIENG-DRPGLETLSALASVFGVSVSELTG 62 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + + + + +++ Sbjct: 63 SDKNIDEALDRRITDAHNKVAS 84 >gi|254854276|ref|ZP_05243624.1| phage protein [Listeria monocytogenes FSL R2-503] gi|258607668|gb|EEW20276.1| phage protein [Listeria monocytogenes FSL R2-503] Length = 83 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 19 IRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR +R LG SQ+ + LG KYE G ++ A L ++++L+ I+ FF Sbjct: 10 IREKRESLGFSQKDMAIKLGFKNASTYLKYETGEYKIKAEMLPLLAKILKCNIANFF 66 >gi|167758894|ref|ZP_02431021.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] gi|167663634|gb|EDS07764.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] Length = 108 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+RI+ R+ L M+QE+L E + ++ + + E+G ++ L +I+ L + + Sbjct: 4 IALGRRIKEERLKLNMTQERLAEEVNLSTSYIGQIERGERKLTLDSLINITNCLGVTVDY 63 Query: 73 FFDVS 77 S Sbjct: 64 LLQES 68 >gi|163853865|ref|YP_001641908.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163665470|gb|ABY32837.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 209 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 14/113 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSI--- 82 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S+E ++ S D +L DD KVR II ++++ Sbjct: 83 ------ERVLATSDEEPFIERFSRADTPRLVS-----DDGKVRLAIIGWIKTV 124 >gi|332361883|gb|EGJ39686.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 136 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K I + R +SQEKL E +G++ Q + K+E G + +++ + + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLD 58 >gi|291562330|emb|CBL41146.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 96 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+ R G++QE+L LG+ + Q V + E G L +S +L Sbjct: 6 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERNCSIDLLIELSCILHVSTD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + S ++ ++ +++ +ST Sbjct: 66 YLLMGSEPSKEEVKNDLLSIISELST 91 >gi|291517925|emb|CBK73146.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 97 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R+ G +Q+++ LG+T + V K+E G + + ++ IS L ++ Sbjct: 6 IGKLIKNARLSKGYTQKEIANKLGVTDKAVSKWECGKSFPDITMIESISRELGISVNQLV 65 Query: 75 DVSPTVCSDISSEENN 90 V+ + E N Sbjct: 66 GVADNSKEEAVMLEKN 81 >gi|261213196|ref|ZP_05927479.1| putative transcriptional regulator [Vibrio sp. RC341] gi|260837614|gb|EEX64308.1| putative transcriptional regulator [Vibrio sp. RC341] Length = 105 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+ LG +G+ ++ +YEKG + L+ +++ L P+S+F Sbjct: 10 RLKEARKKAKLSQKALGVRIGMDESSASPRMNQYEKGKHTPDVQTLKLLADELGVPLSYF 69 Query: 74 F 74 F Sbjct: 70 F 70 >gi|281416428|ref|YP_003347452.1| DNA binding protein [Streptococcus phage Abc2] gi|226823079|gb|ACO83206.1| DNA binding protein [Streptococcus phage Abc2] Length = 168 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R + +++ +L E +G+T + +E G + + S + ++E I + Sbjct: 2 NRLKELRELRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSIPYL 58 >gi|239637715|ref|ZP_04678683.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596674|gb|EEQ79203.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 66 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ++L +G++ Q + E +I++VL ++ F Sbjct: 5 NRVKQYRAHQKMSQQELARRIGVSRQTINMIENDKYNPSLKLCINIAKVLSVTLNDLF 62 >gi|228939741|ref|ZP_04102322.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972604|ref|ZP_04133208.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979211|ref|ZP_04139554.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228780568|gb|EEM28792.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228787145|gb|EEM35120.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819973|gb|EEM66017.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940335|gb|AEA16231.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 116 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 41/92 (44%), Gaps = 6/92 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFNVPVNYLYGEN 65 Query: 76 VSPTVCSDISSEENNVMDFIS----TPDGLQL 103 D + +M+++ + + L Sbjct: 66 KDDHSSDDKYKKFKEIMEWLEPLPKDKEDMAL 97 >gi|190570733|ref|YP_001975091.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019309|ref|ZP_03335116.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|213019398|ref|ZP_03335204.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357005|emb|CAQ54398.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994820|gb|EEB55462.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995418|gb|EEB56059.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 184 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ + + L + I + + +YE+G + +L+ ++ L P Sbjct: 5 SIRYQIAQKVRSWRLKRKYTLKVLIDKTSINYHTLLRYEQGTCGIPIEKLKILAGALSIP 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I F + EN+ D L + +IQI + ++R+ + L +SI + Sbjct: 65 IRNLFPKRKVLR------ENSCFDKAKEQAMYNLMQGYIQIGERELRKVVYALTQSIQAE 118 Query: 130 EKKYRTIEE 138 ++ Sbjct: 119 KESNIKAAR 127 >gi|167463651|ref|ZP_02328740.1| predicted transcription regulator, containing DNA-binding HTH domain [Paenibacillus larvae subsp. larvae BRL-230010] Length = 64 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G+SQEKL + LG++ Q + E G I + I + F Sbjct: 3 NRVRELREERGISQEKLAQILGVSRQSIISIENGRYNPSLILAYQIPKYFNKSIEYVF 60 >gi|110632911|ref|YP_673119.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283895|gb|ABG61954.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 106 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 1/106 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPIS 71 + G+RI+ R G + + L + G + + + E K R A +L I+ L + Sbjct: 1 MKFGERIKDLRTKKGFTLDHLAQETGSSKSYIWELENKNPPRPSAEKLSAIASALGVTVD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + F + + + R +I D K R+ Sbjct: 61 YLFGADAQTLGEAEDTAFFRQYSGLPEETRRQIREMARILDTKSRK 106 >gi|307324211|ref|ZP_07603419.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889942|gb|EFN20920.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 406 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P D ++G RIR R+I S +LG ++ Q+ + E G S L ++ L Sbjct: 1 MPETNDKHIGVRIREFRIIRDFSLAELGRRAHVSTSQLSRVETGEQPASPSVLAAVARAL 60 Query: 67 ESPIS 71 E +S Sbjct: 61 EVTLS 65 >gi|168206392|ref|ZP_02632397.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170662087|gb|EDT14770.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 330 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R +SQ +L E LG+ + YE+ L +S+++ I ++ Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNRSIDSLLGLN 71 Query: 78 PTVC--SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVRSIVSSEKKY 133 + +D+++ + + FI + N+ F +++ K+R + EL R+ +E Sbjct: 72 HSTENTNDLNNSDLSKKIFILNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDI 131 Query: 134 RTIEEECMV 142 + +E Sbjct: 132 KLFQELSKE 140 >gi|154497828|ref|ZP_02036206.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] gi|150273326|gb|EDN00471.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] Length = 122 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G R++ R G++QE+L E + IT Q + E+G + LQ + VL Sbjct: 8 NVQIGARVKEAREAAGLTQERLAELIDITAQYLSGVERGAVGLSVPVLQRLCSVLLVSSD 67 Query: 72 F 72 + Sbjct: 68 Y 68 >gi|9632458|ref|NP_049430.1| hypothetical protein DT1p41 [Streptococcus phage DT1] gi|4530178|gb|AAD21918.1| unknown [Streptococcus phage DT1] Length = 165 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R + +++ +L E +G+T + +E G + + S + ++E I + Sbjct: 2 NRLKELRELRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSIPYL 58 >gi|291541151|emb|CBL14262.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 179 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R +SQ+ G +GI+ + YE G + I+E I + Sbjct: 18 NLKELRQEHSLSQKDFGASIGISAMAISSYESGTKSPSIDTVCRIAETYHVSIDWL 73 >gi|153954271|ref|YP_001395036.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347152|gb|EDK33688.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 207 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 19/117 (16%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---- 73 R+R R ++Q + L +T + KYE G + L+ +S+ I + Sbjct: 6 RLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYLIGVT 65 Query: 74 ---------------FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 F ++ S +E + ++ P+ L N +F +I+D + Sbjct: 66 NIKKVESNYLSRIPIFQITKNHPSLFIAENISGYEYFDKPEELSKNYFFFKIEDNSM 122 >gi|26249039|ref|NP_755079.1| putative repressor protein of prophage [Escherichia coli CFT073] gi|331651509|ref|ZP_08352529.1| repressor protein C2 [Escherichia coli M718] gi|26109446|gb|AAN81649.1|AE016765_51 Putative repressor protein of prophage [Escherichia coli CFT073] gi|331050782|gb|EGI22839.1| repressor protein C2 [Escherichia coli M718] Length = 208 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R + SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSIDY 61 >gi|322516069|ref|ZP_08069006.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322125484|gb|EFX96830.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 233 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++R R M+Q +L + + ++ + + ++EK + A++ + ++++ + + Sbjct: 28 SKLRKLRKAKNMTQSELAKKIKVSEKTISRWEKDKTLMKANKAKELADLFGVSVGYL 84 >gi|302335133|ref|YP_003800340.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318973|gb|ADK67460.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 335 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R GM+QE+L +G++ Q V K+E +L I +V + I Sbjct: 6 NLQHLRATRGMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKICQVFDCTIDDLVQGD 65 >gi|315500763|ref|YP_004089564.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315418775|gb|ADU15413.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 68 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ ++ R G++QE L G++ Q + E+G + IS+ L Sbjct: 2 VGENLKRLRQEKGLTQEVLESRSGLSQQYLSGLERGKRNPTIITVYEISQALGVH 56 >gi|240141318|ref|YP_002965798.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240011295|gb|ACS42521.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 209 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 14/113 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLTTIWRLSQALDVSI--- 82 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S+E ++ S D +L DD KVR II ++++ Sbjct: 83 ------ERVLATSDEEPFIERFSRADTPRLVS-----DDGKVRLAIIGWIKTV 124 >gi|225874839|ref|YP_002756298.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793286|gb|ACO33376.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 148 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS- 71 + +G IR R+ G+SQ + + G+ + + E G L I+ L+ P++ Sbjct: 34 MKIGMTIRGYRLQKGLSQGDIEKRTGLLRCYLSRVENGHTVPSLDTLAKIAGALDLPLAQ 93 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF + S + ++ + F++ R + + R+ ++ +V+ ++ Sbjct: 94 FFAEDSLGRELNTQKLTDDELRFLTQ------IRRYSSNLNDSDRKLLLAMVKKFAAT 145 >gi|188587172|ref|YP_001918717.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351859|gb|ACB86129.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 192 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 12/131 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ R + + + E GI+ + + E+G + L IS+ LE P+ FF Sbjct: 15 IGETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLWKISKALEVPLGSFF 74 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS---SE 130 +++ S + E+ +D + QL + +KI L+ ++ S E Sbjct: 75 EELNREKVSVVRKEDRKQLDIPRSNVIYQLL-------SPDMNRKIEMLLVTLKSGEVEE 127 Query: 131 KKYRTIE-EEC 140 + T E EEC Sbjct: 128 HEKVTHEGEEC 138 >gi|296162693|ref|ZP_06845479.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295887081|gb|EFG66913.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 113 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R+ R G++Q+ L + +G+ Q+++YE G ++ ++ I+ L Sbjct: 1 MSIAARLATLRKQKGLTQQALADAIGLHITQIKRYEAGTSQPSLEAIKKIARTLRVTTDS 60 Query: 73 FFDVSPTVCSDIS 85 + D Sbjct: 61 LIFEEEELEPDAD 73 >gi|325677942|ref|ZP_08157584.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324110496|gb|EGC04670.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 196 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GKRI R GMS++ + +G++ Q V ++E G + I +VL I Sbjct: 137 IGKRIVRLREESGMSRQDFIKAMGVSAQTVYRWENGERIPSMATYMKIMQVLGVDID 193 >gi|229492212|ref|ZP_04386020.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] gi|229320838|gb|EEN86651.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] Length = 292 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G IR R G+S +L L ++ + E G RV RL I +L Sbjct: 8 VLIGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGV 63 >gi|218281525|ref|ZP_03487954.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] gi|218217314|gb|EEC90852.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] Length = 255 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R GMSQ++L E + ++ Q V ++E G L+ +S+V + I+ Sbjct: 7 ILELRTQRGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSIN 59 >gi|52079830|ref|YP_078621.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52785200|ref|YP_091029.1| YqaE [Bacillus licheniformis ATCC 14580] gi|52003041|gb|AAU22983.1| probable transcriptional regulator (phage-related) [Bacillus licheniformis ATCC 14580] gi|52347702|gb|AAU40336.1| YqaE [Bacillus licheniformis ATCC 14580] Length = 122 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 7/95 (7%) Query: 13 INVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G R+R R + +SQ+KLGE LG+ + YE+ L I++ + I Sbjct: 1 MKFGDRLRELRKMRPNLSQKKLGEHLGLAESTISMYEQNRREPEYEILIKIADYFDVSID 60 Query: 72 FFFDVSPTVCSDISSEE------NNVMDFISTPDG 100 + + D E+ N+ FI+ DG Sbjct: 61 YLLRGTDPKVQDKIFEDEAKRILNDPKTFIAARDG 95 >gi|319897230|ref|YP_004135425.1| hypothetical protein HIBPF09641 [Haemophilus influenzae F3031] gi|317432734|emb|CBY81099.1| Conserved hypothetical protein [Haemophilus influenzae F3031] Length = 230 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R G++Q++LG+ +G++ +QK E G ++ VL + Sbjct: 6 NRLKIARKAAGLTQDQLGKLVGVSQNAIQKIEAGG---ETKYTLALASVLGVDPIWLQSG 62 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 ++ ++ + Sbjct: 63 EGKTPEKTTALSTELVTTQRDNE 85 >gi|295705528|ref|YP_003598603.1| helix-turn-helix family protein [Bacillus megaterium DSM 319] gi|294803187|gb|ADF40253.1| helix-turn-helix family protein [Bacillus megaterium DSM 319] Length = 141 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 39/81 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R +S+E++ E L ++ Q + K+E + L +S++ E+ I Sbjct: 1 MRLGNQLQTLREEQKISEEEVAEQLSVSVQHIHKWENNKSYPDIQHLLKLSDIYETTIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 F T+ + I+ E D Sbjct: 61 FIKKDATLQNRINIREEEKKD 81 >gi|257453157|ref|ZP_05618456.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|317059692|ref|ZP_07924177.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313685368|gb|EFS22203.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] Length = 185 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG IR R+ G+ +++ I+ + + EKG + ++ I++VLE P+ Sbjct: 5 INVGNIIRNIRLSKGLLIKEVAMKCDISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFK 64 Query: 73 FF 74 FF Sbjct: 65 FF 66 >gi|227545279|ref|ZP_03975328.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908649|ref|ZP_07126112.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227184748|gb|EEI64819.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894056|gb|EFK87414.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 69 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ KL + +G+ Q + E ++++ L + ++ F Sbjct: 2 NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLF 59 >gi|226303576|ref|YP_002763534.1| TetR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226182691|dbj|BAH30795.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 308 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G IR R G+S +L L ++ + E G RV RL I +L Sbjct: 24 VLIGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGV 79 >gi|226322738|ref|ZP_03798256.1| hypothetical protein COPCOM_00510 [Coprococcus comes ATCC 27758] gi|225208899|gb|EEG91253.1| hypothetical protein COPCOM_00510 [Coprococcus comes ATCC 27758] Length = 106 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I+ R L M+Q+ +GI + YE GV L I++ + + F Sbjct: 24 ISEKIKELRTDLKMNQKNFSAAIGIRQSTLSSYENGVVTPSNDVLLTIAQKFHVSLDWLF 83 Query: 75 DVSP 78 +S Sbjct: 84 GLSE 87 >gi|225387540|ref|ZP_03757304.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] gi|225046376|gb|EEG56622.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] Length = 300 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R GMSQE+L L ++ Q V K+E L+ IS + + + + Sbjct: 6 IKTLRKQAGMSQEQLAGRLNVSRQAVTKWETAAGTPDVENLRAISALFQISLDDLLENRS 65 Query: 79 TVCSDISSEENNVMDF 94 + + ++V ++ Sbjct: 66 PIPPEQEFRFHSVTEY 81 >gi|199598993|ref|ZP_03212401.1| putative regulatory protein [Lactobacillus rhamnosus HN001] gi|199590101|gb|EDY98199.1| putative regulatory protein [Lactobacillus rhamnosus HN001] Length = 106 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L S+E+L + + + QQV ++EKG++ +L IS+ LE + Sbjct: 3 IGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 75 DVSPTVCSDISSEEN--NVMDFIS 96 P + I ++N D++ Sbjct: 63 KSDPKLQKTIQIDKNAKEASDYLR 86 >gi|187923443|ref|YP_001895085.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714637|gb|ACD15861.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 191 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 7/136 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV V I++G +IR R L + +++ GI+ + + E+G + L Sbjct: 1 MVLPLNNKAHVAISIGSKIRALRQRLSRTLDEVATTAGISKPFLSQVERGHATPSITSLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI- 119 I+ L + +F D S E F T F ++ ++ V K+ Sbjct: 61 GIARALGVTVQYFVDTPTEDKSVRRGSELKYFGFDGT------ANLFGRLTNLSVGGKLE 114 Query: 120 IELVRSIVSSEKKYRT 135 + LVR V T Sbjct: 115 VILVRMPVGQNPSEVT 130 >gi|52081939|ref|YP_080730.1| phage-like protein [Bacillus licheniformis ATCC 14580] gi|52005150|gb|AAU25092.1| hypothetical phagelike protein [Bacillus licheniformis ATCC 14580] Length = 212 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VG+RIR RR L MS ++L + L V +YE ++ + + L+ +++ L + Sbjct: 1 MTVGERIRSRRKQLNMSVDQLAQKLKKNRATVYRYESNEIDNMPLTVLEPLAKALNVTPA 60 Query: 72 FFFDVSPTVCSDISSE 87 + T +S++ Sbjct: 61 YLMGWESTEPVQLSTK 76 >gi|219667669|ref|YP_002458104.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537929|gb|ACL19668.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 368 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 19/135 (14%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +R G++Q++L +G++ V K+E G + + L ++ I SP + Sbjct: 12 AKRREKGITQDELAAYIGVSKASVSKWETGQSYPDITFLPLLAAYFNISIDELMSYSPQM 71 Query: 81 CSDISSE--ENNVMDFISTP------DGLQLNRYFIQIDDVKVRQKIIELVR------SI 126 ++ DF S P + L + + +++LV+ + Sbjct: 72 ERSDIAKLYTRLAADFASRPFEDVIAECAALIKKYYSCFP-----LLVQLVKLYTNHFML 126 Query: 127 VSSEKKYRTIEEECM 141 ++++ + E + Sbjct: 127 AGTQERQEALLNETV 141 >gi|302326335|gb|ADL25536.1| DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 106 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK IR R + G +Q L + LGI+ Q + E V +S++ + P +F Sbjct: 46 GKAIRADRGLRGWTQNVLAQKLGISIQNLSAMEHDRRPVSKKMAAKLSQIFDVPPETYF 104 >gi|332855796|ref|ZP_08436047.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332870031|ref|ZP_08439007.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332727271|gb|EGJ58715.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332732531|gb|EGJ63782.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 213 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R +S+ KLG+ +G++ V +EK VN L+ + +VL++ I + Sbjct: 4 IGLRIQKLRKEKKLSKVKLGDLVGVSDVTVGFWEKDVNEPKYENLEALCQVLDTTIDYL 62 >gi|260768699|ref|ZP_05877633.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] gi|260616729|gb|EEX41914.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] Length = 184 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R +SQ +L E IT + E S L I +V +S FF Sbjct: 6 IGQKIAQLRKEHKLSQRELAEKANITHSAISSIENNKVSPSVSSLHKIVKVFNLSLSEFF 65 >gi|257440134|ref|ZP_05615889.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] gi|257197486|gb|EEU95770.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] Length = 109 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 21/119 (17%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I +G I++ R G +Q+ L E LG+T + E+G + + LQ + +L Sbjct: 6 DINIEIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGI- 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSI 126 ++E + L L R +I D + RQ++ EL+ +I Sbjct: 65 --------SADRIIFGTDEPE-------AEALALAR---RISDIKPEYRQQVQELLSAI 105 >gi|167755494|ref|ZP_02427621.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|237733722|ref|ZP_04564203.1| predicted protein [Mollicutes bacterium D7] gi|167704433|gb|EDS19012.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|229383320|gb|EEO33411.1| predicted protein [Coprobacillus sp. D7] Length = 287 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I + R+ R +SQE L LGI+ Q V K+E+ L ++++ + Sbjct: 13 MNIEIANRLVRLRKEKNLSQEALANELGISRQAVSKWERAEASPDTDNLILLAKLYGMSL 72 Query: 71 SFFFDVSPTVCSDISSEENN 90 ++++ + Sbjct: 73 DDLLKTDQKEFESGNNQQAS 92 >gi|166091592|ref|YP_001654042.1| putative transcriptional regulator [Bacillus thuringiensis] gi|165875369|gb|ABY68524.1| putative transcriptional regulator [Bacillus thuringiensis] Length = 130 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 3/99 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+ +R+ R + G++ ++LG+ LG+ + +E LQ IS Sbjct: 5 YFGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFEMLQKISIYFNVSTDRL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + +++E+ I L + I D Sbjct: 65 LNHKIGDSEALTTEDRK---LIVERLAQDLYESYKSIPD 100 >gi|293400467|ref|ZP_06644612.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305493|gb|EFE46737.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 162 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R LG++Q K + + T + YEKG + IS+ + + + Sbjct: 11 GNRIKEIRQSLGLTQVKFAKIINCTQATLSSYEKGSIIPSLETMIKISKECQISLDWLCG 70 Query: 76 VSPTVCSD 83 +S SD Sbjct: 71 LSDVKDSD 78 >gi|262037710|ref|ZP_06011152.1| transcription regulator [Leptotrichia goodfellowii F0264] gi|261748182|gb|EEY35579.1| transcription regulator [Leptotrichia goodfellowii F0264] Length = 293 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R MSQEKL E LG++ Q V K+E G+ ++ ISE+ E I Sbjct: 5 EKLKSFRKQAKMSQEKLSEKLGVSRQAVTKWETGLGIPEIENIRAISELFEISID 59 >gi|153938949|ref|YP_001391593.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|168180756|ref|ZP_02615420.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226949661|ref|YP_002804752.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|152934845|gb|ABS40343.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|182668489|gb|EDT80468.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226842839|gb|ACO85505.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|295319621|gb|ADF99998.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] gi|322806632|emb|CBZ04201.1| transcriptional regulator, Cro/CI family [Clostridium botulinum H04402 065] Length = 78 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E G I++V I F F Sbjct: 3 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESE 66 >gi|307352509|ref|YP_003893560.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307155742|gb|ADN35122.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 64 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R + ++QE L + LG+T Q + EKG I++ I F Sbjct: 3 NRIKVFRAMHDLTQEGLAKELGVTRQTILAIEKGKYDPSLDLAFKIAKYFNVKIEEVF 60 >gi|325674989|ref|ZP_08154676.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554575|gb|EGD24250.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 182 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 11/91 (12%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L E G+T + K E+G++ + I+ L++ +S F +P Sbjct: 5 LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGISTPSIAVALKIARALDADVSQLFSDTP 64 Query: 79 -----------TVCSDISSEENNVMDFISTP 98 + +++ V D I+T Sbjct: 65 DNSVMAIERHAERAQVDADDDSAVYDAIATR 95 >gi|210621510|ref|ZP_03292670.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] gi|210154709|gb|EEA85715.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] Length = 136 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I R GM+Q L + +G+T + V K+E+ ++ + + ++E+ + + Sbjct: 7 GEMISSLRKDRGMTQLDLAKKMGVTDKAVSKWERDLSFPDINSIPKLAEIFDVSVDELMQ 66 Query: 76 VSPTVCSDISSEE 88 V V ++ EE Sbjct: 67 VKSDV--NVGEEE 77 >gi|153007564|ref|YP_001368779.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] gi|151559452|gb|ABS12950.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] Length = 235 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R G +Q++L + GI V ++E + G+ +L ++E+L ++ Sbjct: 4 IGDRIRRARTQKGFTQQQLADHFGIARVSVTQWENNTTQPGSDKLIGLTELLGGDAEWY 62 >gi|300933872|ref|ZP_07149128.1| hypothetical protein CresD4_07355 [Corynebacterium resistens DSM 45100] Length = 294 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+R+R R+ G+SQ L E + + + ++E GV+ + ++ L +S Sbjct: 12 GRRLRHARLDRGLSQNALAEGI-CSASAISRWEAGVHLPPEDAIWSLANRLGIDVSVLTG 70 Query: 74 --FDVSPTVCSDISSE 87 FD D +E Sbjct: 71 LGFDTRFAESPDRFAE 86 >gi|256843791|ref|ZP_05549278.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|262047764|ref|ZP_06020716.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|293381647|ref|ZP_06627629.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312977082|ref|ZP_07788831.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] gi|256613696|gb|EEU18898.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|260571969|gb|EEX28537.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|290921789|gb|EFD98809.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310896410|gb|EFQ45475.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] Length = 270 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 13/112 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R LG++Q+++ + IT K EKG NR+ L I + +S+ Sbjct: 1 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI---QIDDVKVRQKIIE 121 F D + + S +E N + LN F +I +++++I Sbjct: 61 FVDHY--LNDENSEKEVNYSEI--------LNIAFYEKDKIAAEEIKRQIFS 102 >gi|229122159|ref|ZP_04251374.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|228661285|gb|EEL16910.1| Transcriptional regulator [Bacillus cereus 95/8201] Length = 116 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFSVPVNYLYGEN 65 Query: 78 PTVCSD 83 V D Sbjct: 66 NEVNLD 71 >gi|227358409|ref|ZP_03842744.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227161367|gb|EEI46420.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 104 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ + RI +R LGM+ ++ L I+ Q + E G ++ L I+ +L Sbjct: 7 INSIIAYRIMQKRKELGMTGREIAHSLEISQQHYSRIENGHTKITVEHLFSIAFILGV 64 >gi|300362438|ref|ZP_07058614.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] gi|300353429|gb|EFJ69301.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] Length = 95 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 7/78 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++SE+ + Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60 Query: 73 F-------FDVSPTVCSD 83 F++ +D Sbjct: 61 LLKSGEPSFELKNEDIND 78 >gi|226325411|ref|ZP_03800929.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758] gi|225206154|gb|EEG88508.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758] Length = 135 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 34/79 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ G++QEK E + ++ Q + +E + + +S++ + Sbjct: 1 MEIGKKLKNARIEAGLTQEKAAEKIDVSRQTISNWENEKSYPDIISVIALSDLYSVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + N V Sbjct: 61 LLKGDQKMAEHLEESTNVV 79 >gi|160902585|ref|YP_001568166.1| XRE family transcriptional regulator [Petrotoga mobilis SJ95] gi|160360229|gb|ABX31843.1| transcriptional regulator, XRE family [Petrotoga mobilis SJ95] Length = 105 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ RR+ +G++Q+ L E +G T + K+EKG LQ ++EVL I +F+ P Sbjct: 23 IKKRRLQMGITQKDLAERMGTTQAIISKFEKGNYNPTYLFLQRLTEVLGGSIKLYFE--P 80 Query: 79 TVCSDISSEENNVMDFIST 97 +I+S++ + D T Sbjct: 81 RDDKEINSDDVSKNDNFET 99 >gi|126727400|ref|ZP_01743235.1| hypothetical protein RB2150_09379 [Rhodobacterales bacterium HTCC2150] gi|126703395|gb|EBA02493.1| hypothetical protein RB2150_09379 [Rhodobacterales bacterium HTCC2150] Length = 195 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R + +LG ++ + K E+G L I+ V + FF Sbjct: 15 IGQKIRALRTEKALGLTQLGNHTDLSAGMLSKIERGQVIPTLPTLLRIAMVFGVGLEHFF 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + +I + + + PD ++ + Sbjct: 75 EEGDAPTLEIVRSK----ERLKMPDTMERMPSYY 104 >gi|90581157|ref|ZP_01236956.1| Hypothetical transcriptional regulator [Vibrio angustum S14] gi|90437678|gb|EAS62870.1| Hypothetical transcriptional regulator [Vibrio angustum S14] Length = 130 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ ++IR R G++Q + + LG+ Q E G L +I+++ P+ + Sbjct: 21 AHIAQKIREAREWKGITQVSMAKQLGVARQTYLDVESGKTEPRILMLMNIAKITGRPLHW 80 Query: 73 F 73 F Sbjct: 81 F 81 >gi|21233393|ref|NP_639310.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770358|ref|YP_245120.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188993556|ref|YP_001905566.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|325920249|ref|ZP_08182199.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923520|ref|ZP_08185169.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923552|ref|ZP_08185196.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|21115231|gb|AAM43192.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575690|gb|AAY51100.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167735316|emb|CAP53530.1| transcriptional regulator [Xanthomonas campestris pv. campestris] gi|325545969|gb|EGD17179.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325545992|gb|EGD17197.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549272|gb|EGD20176.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 66 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F F Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLF 62 Query: 75 DVS 77 + Sbjct: 63 EDG 65 >gi|56965325|ref|YP_177057.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911569|dbj|BAD66096.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 112 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R+R R ++Q+++ LGIT YE+G N ++L+ ++E I++ Sbjct: 7 RLRELRKAHQLTQQEVASFLGITESAYGFYEQGRNEPSIAKLKQLAEKYNVSIAY 61 >gi|330996840|ref|ZP_08320709.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila YIT 11841] gi|329572283|gb|EGG53942.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila YIT 11841] Length = 117 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ ++ R + G +QE++ + +GI YE G V L+ IS + Sbjct: 4 INQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERISNMFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 F+ + ++I + + D Sbjct: 64 FILFEDNIQADNEIMATAFRISDL 87 >gi|255609178|ref|XP_002539013.1| conserved hypothetical protein [Ricinus communis] gi|223509258|gb|EEF23370.1| conserved hypothetical protein [Ricinus communis] Length = 110 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 16/111 (14%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISF 72 ++G+++ R G + +KL E G++ + + E K R A +L +++VL +F Sbjct: 7 HLGEKLYELRKQRGFTLDKLAELSGLSKSYIWELENKESQRPSAEKLTALADVLGVSTAF 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIE 121 F + + +E R + +++ + +KI++ Sbjct: 67 FMEEDIRQPEERHLDEAFF-------------RNYQKLEPDSKQQLRKILD 104 >gi|218532810|ref|YP_002423626.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|254563828|ref|YP_003070923.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|218525113|gb|ACK85698.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] gi|254271106|emb|CAX27113.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 209 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 14/113 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSI--- 82 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S+E ++ S D +L DD KVR II ++++ Sbjct: 83 ------ERVLATSDEEPFIERFSRADTPRLVS-----DDGKVRLAIIGWIKTV 124 >gi|159038929|ref|YP_001538182.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917764|gb|ABV99191.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 83 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI + R G+S+ L LG+ +Q + E+G R I+ E P+ F Sbjct: 5 VHNRIAVLRAERGISRRDLAGALGVHYQTIGYLERGEFRPSLHLALRIAAYFEVPVEVVF 64 Query: 75 DVSP 78 + P Sbjct: 65 SIEP 68 >gi|302531579|ref|ZP_07283921.1| transcriptional regulator [Streptomyces sp. AA4] gi|302440474|gb|EFL12290.1| transcriptional regulator [Streptomyces sp. AA4] Length = 82 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+R R G++QE+L E G+ + V + E+G+ + L ++ L + Sbjct: 11 RIIGERVREFRNKAGLNQEQLAEAAGVHWTFVSQVERGLRNINLHNLLKFADGLGVNPAK 70 Query: 73 FFDVS-PTVCSD 83 D P SD Sbjct: 71 LVDGLRPPSDSD 82 >gi|167463515|ref|ZP_02328604.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 151 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 10/124 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR RR +L ++Q ++ E L + E G +S LQ I+++L++ + Sbjct: 1 MSIGERIRQRRKLLQITQLEIAEQLKMGRSNFGHIENGRVTPSSSDLQKIADILQTNADY 60 Query: 73 FFD-VSPTVCSDISSEENNVMDFISTPDGLQL--------NRYFIQID-DVKVRQKIIEL 122 ++ ++ ++ D L YF I+ + R KI+ + Sbjct: 61 LLGRTDDPSPQGAAAGLKTYPEWATSKDKRDLKKMLQSPDVLYFDGIEFSDEDRAKILGV 120 Query: 123 VRSI 126 + +I Sbjct: 121 METI 124 >gi|331092591|ref|ZP_08341410.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400602|gb|EGG80216.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium 2_1_46FAA] Length = 148 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R +SQ ++ E L +T Q V +E + LQ ++E+ E Sbjct: 1 MKLGEKLKKYRKERKLSQREVAEKLNVTRQVVSYWECDLTIPDIQILQQLAELYEI---- 56 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 D+ + + S+ +N + + G+ L F +I Sbjct: 57 --DMEEMLQEENSTTQNEEIAALIC--GIILAVAF-KIP 90 >gi|229043105|ref|ZP_04190833.1| Helix-turn-helix repressor protein [Bacillus cereus AH676] gi|228726244|gb|EEL77473.1| Helix-turn-helix repressor protein [Bacillus cereus AH676] Length = 69 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I+++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKIFQTTIEHVF 60 >gi|222530497|ref|YP_002574379.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457344|gb|ACM61606.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 145 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 17/141 (12%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + +G +IR R G + +L G+ + + E+G + + L I++ L Sbjct: 3 KKNKIARALGLKIRKLREEKGWTINQLALYAGVNPTSIMRAERGESELSLGNLLRIAKAL 62 Query: 67 ESPISFFFD--------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVR 116 + ++ + + + + ++ + I + L F I + V+ Sbjct: 63 KVDLNTLVEESMDQIVLGDEELVPEEKDKTPDIYEIIRKAENL----NFKGIPVNEPDVK 118 Query: 117 QKIIE---LVRSIVSSEKKYR 134 Q I+E + + EK+ Sbjct: 119 QAIVEAITFAIRLKAKEKRQE 139 >gi|90592681|ref|YP_529596.1| RepR; putative repressor [Clostridium phage phi CD119] gi|61697872|gb|AAX53417.1| RepR; putative repressor [Clostridium phage phi CD119] Length = 131 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 7/110 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R++ R ++ E+LG+ L +T V +E L++I++ + + + Sbjct: 6 GNRLKNLRSEKRITGEELGKILNVTKVAVSNWESDRRFPDQDTLKNIADYFDVSVDYLLC 65 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDG----LQLNRYFIQIDDVKVRQKI 119 + +D + N D I D +L + ++D R I Sbjct: 66 RSDARNTINDKVNTSNTTFDIIENSDANKKVKELMKKIYSLNDDD-RNAI 114 >gi|18310949|ref|NP_562883.1| DNA-binding protein [Clostridium perfringens str. 13] gi|110801118|ref|YP_696646.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|168204849|ref|ZP_02630854.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168208668|ref|ZP_02634293.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168212998|ref|ZP_02638623.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|168215593|ref|ZP_02641218.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|169343522|ref|ZP_02864521.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|182624367|ref|ZP_02952151.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|18145631|dbj|BAB81673.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675765|gb|ABG84752.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|169298082|gb|EDS80172.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170663587|gb|EDT16270.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170713177|gb|EDT25359.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170715478|gb|EDT27660.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|177910370|gb|EDT72747.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182382433|gb|EDT79912.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 179 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ ++QE+L ++ + + E + + L I ++L + ++ Sbjct: 1 MEIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTE 60 Query: 73 FFDVSPTVCSDISSEE 88 FF S ++ Sbjct: 61 FFSEDTNEKIAFSKDD 76 >gi|58699616|ref|ZP_00374309.1| DNA-binding protein, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533867|gb|EAL58173.1| DNA-binding protein, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 74 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 29/37 (78%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 + +GK+I+ R+ G++Q +LG+ +G++++Q+Q+YE Sbjct: 1 MELGKKIKELRLYCGLTQTELGKKIGVSYRQIQRYEN 37 >gi|303246058|ref|ZP_07332339.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492454|gb|EFL52325.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+I+ R ++QEKL + G++ Q + + E+G + ++ +++ L+ P++ F Sbjct: 9 GKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLAKALDIPMAELFS 68 Query: 76 VSP 78 + Sbjct: 69 LEE 71 >gi|295398102|ref|ZP_06808151.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] gi|294973621|gb|EFG49399.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] Length = 263 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RI+ R LGMSQ + + +G T V +E G N R++ I+ + + + Sbjct: 4 NKRLGERIKKIRKKLGMSQLEFSKAIGATKSAVSNWENGYNAPNNERIKAIANLGNTTVD 63 >gi|255038320|ref|YP_003088941.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254951076|gb|ACT95776.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 124 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 36/57 (63%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 N+ ++IR R+ G+SQE + + LG++ E+G + SRL++++++L+ P+ Sbjct: 6 NLSEKIRQIRLQKGLSQENMADMLGLSTTAYGDIERGRTELSVSRLENVAKLLDVPL 62 >gi|227357903|ref|ZP_03842249.1| hypothetical protein HMPREF0693_3140 [Proteus mirabilis ATCC 29906] gi|227161876|gb|EEI46900.1| hypothetical protein HMPREF0693_3140 [Proteus mirabilis ATCC 29906] Length = 101 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 14/110 (12%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+ I+ R +S +L + GI+ Q + + E+G + S L + + P Sbjct: 2 DINKILGREIKFLRKRSLLSGCELAKAFGISQQHLSRIERGEVQWSVSFLLRVCAFFDIP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + F + S S +NN+ F FI+I++ R++I Sbjct: 62 MIHFIKLIEKETSSFSIVDNNLCQF-----------EFIEINN---RRRI 97 >gi|158320882|ref|YP_001513389.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141081|gb|ABW19393.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 125 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 9/108 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 +R++ R M+Q++L + LG+ + YE G A L I+ +L + + Sbjct: 9 ERLKELRKENNMTQQELADKLGLVRTAIANYETGRTVPDAETLNLIANILSTTTDYLLGR 68 Query: 75 ------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + +DI SE+ + S + +L + ++ D++ R Sbjct: 69 ANYIPKEKNKPSSTDIISEDIRKLSPESQEELKKLIELY-KMRDMQKR 115 >gi|23505482|ref|NP_700411.1| regulatory protein [Salmonella phage ST64B] gi|168822352|ref|ZP_02834352.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|23379229|gb|AAL25916.1| Sb38 [Salmonella phage ST64B] gi|205341260|gb|EDZ28024.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261247208|emb|CBG25032.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994039|gb|ACY88924.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158553|emb|CBW18064.1| predicted bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320086315|emb|CBY96088.1| 26 kDa repressor protein Regulatory protein CI [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|323130316|gb|ADX17746.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988930|gb|AEF07913.1| hypothetical protein STMUK_2020 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 231 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M +L E +G+ + + E G + L +++ L I+ Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIA 60 Query: 72 FFFDVSPTVC-----SDISSEENNVMDFIS 96 F P SD+ + NV D Sbjct: 61 ELFTSDPKGNTVCKHSDMRKDSANVKDLFR 90 >gi|83720019|ref|YP_443629.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83653844|gb|ABC37907.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 80 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + +P + +G+ IR R G+SQE+L GI + + E+G N L +I+ Sbjct: 5 SSSRQHPTLVALGRAIRRIRKDRGLSQEQLALTAGIDVSYLGRVERGDNNASVLALHYIA 64 Query: 64 EVLE 67 E L Sbjct: 65 EALG 68 >gi|71083930|ref|YP_266650.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91763002|ref|ZP_01264966.1| probable transcription regulator [Candidatus Pelagibacter ubique HTCC1002] gi|71063043|gb|AAZ22046.1| probable transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91717415|gb|EAS84066.1| probable transcription regulator [Candidatus Pelagibacter ubique HTCC1002] Length = 477 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 6/111 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI +G +I+ R LG+ KL E LGI+ + E G ++ L + E L + Sbjct: 4 LDIKIGPKIKAFRRQLGLQANKLSEDLGISPSYLNLIESGKRKIDGDLLLKVCEKLNIQL 63 Query: 71 SFFFDVSPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQIDDVKVR 116 S S + SE +D + P+ L +I VR Sbjct: 64 SDLTSKSDINLENTISEILDDKLFEDLDILG-PEVKDLVGTNPKIGRALVR 113 >gi|78063409|ref|YP_373317.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971294|gb|ABB12673.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 281 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +++ P+ +G+ +R R + G+SQ L GI+ +Q+ E G + G L Sbjct: 1 MNASRREPHAPPHELGQLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDTLL 60 Query: 61 HISEVLESPI 70 +++ L+ P+ Sbjct: 61 TLAQTLDVPL 70 >gi|312891359|ref|ZP_07750876.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296053|gb|EFQ73205.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 113 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 15/117 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK+IRL R G SQE + + L I+ K E G+ + SRL+ IS + + + Sbjct: 2 KTLGKKIRLLRHQRGWSQEDVAKRLDISIPAFSKIETGITDINLSRLEQISILFDMTVVQ 61 Query: 73 FFDVSPTVCSDISSEE-NNVMDFISTP--DGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + S E ++V +S + + L ++K+IEL + Sbjct: 62 LLTFNDAEQEQKYSNELDSVSKRLSDRDTEVIDL------------QKKVIELYEEL 106 >gi|304439390|ref|ZP_07399302.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372172|gb|EFM25766.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 67 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R MSQE L +G+ + + E G +I++V I F Sbjct: 2 ISNRIKEFRARNSMSQEDLANAVGVRRETIGNLENGRYNPSLVLAWNIAKVFGVTIEEIF 61 >gi|296102379|ref|YP_003612525.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056838|gb|ADF61576.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 175 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ +R G S KL E G++ + + E+ + S L I+ L P Sbjct: 3 ITQHLATTLKTQRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPF 62 Query: 71 SFF 73 S F Sbjct: 63 SAF 65 >gi|291545678|emb|CBL18786.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 166 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVS 77 I R GMSQ++L + + +T Q V ++E G L+ +S+ + I+ + Sbjct: 7 ILKLRTERGMSQDELADKIMVTRQAVSRWENGDTVPNTDTLKLLSKEFDVSINTLLGEPR 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +C ++ DG LN + + Sbjct: 67 KLICQCCGMPIDDDSILGRDKDG-TLNEEYCK 97 >gi|260576097|ref|ZP_05844091.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259021796|gb|EEW25098.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 228 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R R + G++QE L + G+T + +QK E G + L+ ++ L ++ Sbjct: 9 KYIADQCRYIRKMFGLTQENLADAAGLTVRTIQKVESGRHMPEVQTLRSLARGLGFDMAV 68 Query: 73 FFDVSPTVC 81 F +P Sbjct: 69 FLRPTPEQE 77 >gi|253988423|ref|YP_003039779.1| phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988445|ref|YP_003039801.1| hypothetical protein PAU_00964 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638950|emb|CAR67565.1| similar to unknown protein of bacteriophage (similar to phag transcriptional repressor) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779873|emb|CAQ83034.1| putative phage regulatory protein [Photorhabdus asymbiotica] gi|253779895|emb|CAQ83056.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 130 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI L R ++Q++L + LGI Q + YE G +V A+ L ++++L + Sbjct: 21 KELGARIALARKEQQLTQQQLADQLGIAQQTMAHYEGGRLKVSAALLPLLAQILNLSLD 79 >gi|187919154|ref|YP_001888185.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717592|gb|ACD18815.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 190 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 11/129 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV + NP + +G +IR R L + + GI+ + + E+G+ + L Sbjct: 1 MVTTIQKSNPA-LEIGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLA 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP----------DGLQLNRYFIQI 110 I+ L + +F D ++ F + G QL +++ Sbjct: 60 GIAHALGVTVQYFVDTPSEERCVSRGDQLKFFGFADSANLFARLTNLTGGRQLEAILVRM 119 Query: 111 DDVKVRQKI 119 + R ++ Sbjct: 120 PPGQKRSEV 128 >gi|83950311|ref|ZP_00959044.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83838210|gb|EAP77506.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 190 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L + LG + + + E+ ++ S L+ +++VL PIS F Sbjct: 12 LGADLRALRKARGVTLAALADALGRSVGWLSQVERDLSEPSISDLRKMADVLGVPISMLF 71 Query: 75 DVSPTVCSDISS 86 + + Sbjct: 72 GQAMAPAEEAGH 83 >gi|312794292|ref|YP_004027215.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181432|gb|ADQ41602.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 144 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 63/144 (43%), Gaps = 26/144 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI R G ++ KL E G++ + + E+G+ + + +++I ++ Sbjct: 1 MDIGKRIVELREKYGFTRYKLSELSGVSQSALSEIERGIKQPTITTIENICRAFNLTLAD 60 Query: 73 FF-DVSPTVCSDISSEENNVMD-----------FIST-------------PDGLQLNRYF 107 FF + P + ++ S N + F+ T P+ +L + Sbjct: 61 FFAEKEPEIPPEVRSLINTAANLSPTQIQLLDSFLQTFQPGRIVFLDDLLPEAAELIKIT 120 Query: 108 IQIDDVKVRQKIIELVRSIVSSEK 131 ++D K+R ++ + RS+ SE Sbjct: 121 KKLDKEKIR-ILLNVARSMFESED 143 >gi|298383894|ref|ZP_06993455.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|298263498|gb|EFI06361.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 102 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R+ GM+QE+L +G + + E G + S L I + L ISF Sbjct: 42 IGERLKAERLKAGMTQEQLAAKIGTKKSYISRIENGHADIQLSTLFKIFQGLGRKISF 99 >gi|242398850|ref|YP_002994274.1| Predicted transcription regulator, containing CBS domains [Thermococcus sibiricus MM 739] gi|242265243|gb|ACS89925.1| Predicted transcription regulator, containing CBS domains [Thermococcus sibiricus MM 739] Length = 186 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IP P+D K I+ R LG++QE+L + G+T + K E G S I + L Sbjct: 4 IPQPIDP---KEIKRFRKELGITQEELAQRAGVTQAYIAKLETGKVDPRLSTFNRILQAL 60 Query: 67 E 67 + Sbjct: 61 K 61 >gi|227511236|ref|ZP_03941285.1| possible DNA-binding protein [Lactobacillus buchneri ATCC 11577] gi|227085531|gb|EEI20843.1| possible DNA-binding protein [Lactobacillus buchneri ATCC 11577] Length = 171 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ G SQ+K+ + L +T Q + +E G +R L +S+V + P+ F + Sbjct: 7 QLKKARIKKGYSQQKVADELQVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVKDN 66 Query: 78 PTVCSDISSEENNVMDFI 95 + I S+ + F Sbjct: 67 HSFDLQIESDREEFLRFF 84 >gi|160914768|ref|ZP_02076982.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991] gi|158433308|gb|EDP11597.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991] Length = 69 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KRI++ R+ MSQE L + +G T Q + E G I + L + F Sbjct: 4 KRIKIARLECDMSQEDLAKAVGATRQTIGLIEAGNYNPSLKLCLAICKALNKTLDDLF 61 >gi|153004833|ref|YP_001379158.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028406|gb|ABS26174.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. Fw109-5] Length = 112 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 1 MVGNKKIPNPV-D--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M K +P D G+R+R +R G++QE L E L ++ V E+G + Sbjct: 33 MAKTKSQRDPRRDELRRFGERVREQRRTRGLTQEALAEALDLSVAYVSLIERGGRNPPYT 92 Query: 58 RLQHISEVLESPIS 71 + I+ L P S Sbjct: 93 TVVAIARALGIPAS 106 >gi|118578551|ref|YP_899801.1| helix-turn-helix domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501261|gb|ABK97743.1| helix-turn-helix domain protein [Pelobacter propionicus DSM 2379] Length = 372 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI R + G S++ L + + T + + EK + R L IS L P SFF Sbjct: 8 ERITYARELKGFSKKDLAQKVDKTPSAISQIEKSIIRPDTETLMRISLALSVPPSFF 64 >gi|307710145|ref|ZP_07646589.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619125|gb|EFN98257.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 108 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + N+ +IR R ++Q++L E ++ + + E + I + LE Sbjct: 2 DDILENISNQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEV 61 Query: 69 PISFFF 74 P+S FF Sbjct: 62 PLSDFF 67 >gi|291544668|emb|CBL17777.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 119 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R ++Q +L I + YE G+ A + ++++ + + Sbjct: 8 IGNKIRQLRKENKLTQAQLAAVCYINRSSIGLYENGLREPSAGTIAYLAKYFNVSVDYLL 67 Query: 75 DVSP 78 V Sbjct: 68 GVDE 71 >gi|289166201|ref|YP_003456339.1| phage repressor [Legionella longbeachae NSW150] gi|288859374|emb|CBJ13310.1| putative phage repressor [Legionella longbeachae NSW150] Length = 229 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+RI + R G++++ L E G + ++ YE+G G + ++ +++VLE Sbjct: 5 IKKKIGQRIMIERKAKGLTRKALAELTGELKISRINNYERGDRTPGPTEIKLLADVLEVS 64 Query: 70 ISFFFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDV 113 S+ ++ I+ ++ + L+ +I + Sbjct: 65 ASYLMCLTDNREGKITKSPGMGALIPVLDYKQAADLDNCIQKIKED 110 >gi|169335943|ref|ZP_02863136.1| hypothetical protein ANASTE_02378 [Anaerofustis stercorihominis DSM 17244] gi|169258681|gb|EDS72647.1| hypothetical protein ANASTE_02378 [Anaerofustis stercorihominis DSM 17244] Length = 351 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 42/90 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ + I+ +R+ G++QE + LG++ V K+EKGV+ + L I+ + ++ Sbjct: 1 MNINEIIKNKRVEAGLTQENVANYLGVSTPAVNKWEKGVSYPDITLLPPIARLFNIDMNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + N + + +G + Sbjct: 61 LLSFNEDLSEKEIGSILNKVSELMKDEGFE 90 >gi|78357361|ref|YP_388810.1| transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219766|gb|ABB39115.1| transcriptional regulator, XRE family with cupin sensor domain [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 188 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+ R +G S E+L + +G+T Q V++YE G + S L ++ ++ Sbjct: 11 REIAPRLLGLRDAVGFSAEELAQKVGVTSQVVERYESGEVEIPVSYLTDVARACGVDLTA 70 Query: 73 FFDVSPTVCSDIS 85 D + Sbjct: 71 LVSGGDAHLHDFT 83 >gi|89100265|ref|ZP_01173131.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911] gi|89085003|gb|EAR64138.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911] Length = 116 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R L ++Q++L L I ++KYE G + + IS +L+ P S Sbjct: 4 IGLAIKQNRERLNLTQQELAVKLRIGTSTIEKYENGCQQPDTQTILKISTILDVPASELL 63 Query: 75 DVSPTVCSDISSEE 88 + T C E Sbjct: 64 EHGFTACQTGLDPE 77 >gi|325842510|ref|ZP_08167681.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325489554|gb|EGC91918.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 367 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVGK I L+R ++Q++L + +G++ + K+E G + + L ++ I Sbjct: 4 INVGKMIILKRKEKKITQDELAKYIGVSKAAISKWETGQSYPDITLLPILAAYFNMSIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LIGYEPQMVKE 74 >gi|323342509|ref|ZP_08082741.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463621|gb|EFY08815.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 258 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 MSQE L E L I+ Q + K+E+G + L +SE+L P++ + Sbjct: 1 MSQEMLAEKLNISRQSISKWERGESLPSIDNLIRLSEILGIPLNDLVKGKES 52 >gi|49188540|ref|YP_025638.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola] gi|47525123|gb|AAT35137.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola] gi|320321602|gb|EFW77709.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|330962559|gb|EGH62819.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 116 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 11/118 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G RI+ R G++Q L E + + +YE+ +L ++E Sbjct: 1 MMSSIRKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAETAPDGEQLIKMAE-- 58 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 FF++SP + + + + L R I+D +++I + + Sbjct: 59 ------FFEISPMDLLPVKIDVKLQAVLDLRSELIDLVR---TINDPSQLERLIGVAK 107 >gi|47459180|ref|YP_016042.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K] gi|47458509|gb|AAT27831.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K] Length = 361 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N G R++ R +SQ++L E GI +Q+ + E G+ L IS L Sbjct: 7 NFGTRLKELRKSKQISQKELSESTGIVREQISRIENGLVNPTLDTLHKISLALNI 61 >gi|52079512|ref|YP_078303.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52784877|ref|YP_090706.1| hypothetical protein BLi01105 [Bacillus licheniformis ATCC 14580] gi|52002723|gb|AAU22665.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52347379|gb|AAU40013.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 183 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ V + I+ R I S ++L G++ + + EKG + + L I+ L+ Sbjct: 2 NSIEKQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVM 92 + + + + E + Sbjct: 62 SFTSLAERPAGEPTVVRKHEKTPV 85 >gi|134299415|ref|YP_001112911.1| cupin 2 domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052115|gb|ABO50086.1| Cupin 2, conserved barrel domain protein [Desulfotomaculum reducens MI-1] Length = 180 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++R R M+ + L E G++ + + E+G + + + L+ I++ L I+ FF Sbjct: 6 EKVRTLRNQKNMTLKDLSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVHIASFFAN 65 Query: 77 SPTVCSDISSEENNVMDFI-STPDGLQLNRYF 107 ++E S+ + ++L+ F Sbjct: 66 YSNTNFTTRADEQKSFKIEGSSTEYIRLSGEF 97 >gi|332981042|ref|YP_004462483.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698720|gb|AEE95661.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 209 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK + R ++QE + E LG++ Q + +E + +++ I +LE ++ Sbjct: 5 GKLLMDLRNAKQLTQEDVAEKLGVSRQTISSWETNRTKPNYDQIKQICAILEVDMNTLLG 64 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + + +N+ + T Sbjct: 65 NGAGSNKKSAKQVSNIFPILVT 86 >gi|324990830|gb|EGC22765.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 136 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K I + R +SQEKL E +G++ Q + K+E G + +++ + + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLD 58 >gi|317056543|ref|YP_004105010.1| XRE family transcriptional regulator [Ruminococcus albus 7] gi|315448812|gb|ADU22376.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 63 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q++L +G++ Q + E ++ L P+ F Sbjct: 3 NRIKELRKSQKLTQDELANAVGVSRQTINAIENDKYNPTLELAIKLARYLRIPVEDLF 60 >gi|293375349|ref|ZP_06621631.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292646105|gb|EFF64133.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 367 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVGK I L+R ++Q++L + +G++ + K+E G + + L ++ I Sbjct: 4 INVGKMIILKRKEKKITQDELAKYIGVSKAAISKWETGQSYPDITLLPILAAYFNMSIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LIGYEPQMVKE 74 >gi|271499444|ref|YP_003332469.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270342999|gb|ACZ75764.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 86 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R+ ++QEKLG GI +V +YE G++R + ++VL P + Sbjct: 4 ARLKTARLRADLTQEKLGVLAGIEEETARSRVSQYEGGIHRPTFEMMCAFAKVLNVPECY 63 Query: 73 FFDVSPTVCS 82 F+ V+ Sbjct: 64 FYTVNDDFAD 73 >gi|262171043|ref|ZP_06038721.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus MB-451] gi|261892119|gb|EEY38105.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus MB-451] Length = 217 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 46 QIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 105 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S ++ Sbjct: 106 FANDPQLLSSERSFPDDP 123 >gi|297587718|ref|ZP_06946362.1| DNA-binding protein [Finegoldia magna ATCC 53516] gi|297574407|gb|EFH93127.1| DNA-binding protein [Finegoldia magna ATCC 53516] Length = 172 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L + + Q V K+E+G++ + L +SE+L + +S Sbjct: 4 ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL--- 60 Query: 77 SPTVCSDISSEENNVMDFISTP-DGLQL 103 + ++ + +D IS + + L Sbjct: 61 ---LGENVEETQQTELDKISEKLEEINL 85 >gi|162448051|ref|YP_001621183.1| XRE family transcriptional regulator [Acholeplasma laidlawii PG-8A] gi|161986158|gb|ABX81807.1| transcriptional regulator, XRE family [Acholeplasma laidlawii PG-8A] Length = 182 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GK+IR R+ ++QE+L L +T + + E + L + EVL Sbjct: 2 IDIGKKIRALRLGNNLTQEELANRLELTKGYISQLENNLTSPSIQTLFSLLEVLGVETHE 61 Query: 73 FFDVSPTVCSDI 84 FF + I Sbjct: 62 FFSKPEGEDAKI 73 >gi|154502378|ref|ZP_02039438.1| hypothetical protein RUMGNA_00191 [Ruminococcus gnavus ATCC 29149] gi|153797003|gb|EDN79423.1| hypothetical protein RUMGNA_00191 [Ruminococcus gnavus ATCC 29149] Length = 126 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R LG++ +K GE LG+ + K EK + ++ I + D Sbjct: 4 GERVLEIRKALGLTMDKFGEKLGVQKSAISKIEKDRVNLSDQMVKLICREYNVNYDWLMD 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + SD+ + + + S + L+R Sbjct: 64 GEGEMFSDL--PQTVLDELCSQYELDDLDR 91 >gi|110802551|ref|YP_699244.1| DNA-binding protein [Clostridium perfringens SM101] gi|110683052|gb|ABG86422.1| DNA-binding protein [Clostridium perfringens SM101] Length = 179 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ ++QE+L ++ + + E + + L I ++L + ++ Sbjct: 1 MEIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTE 60 Query: 73 FFDVSPTVCSDISSEE 88 FF S ++ Sbjct: 61 FFSEDTNEKIAFSKDD 76 >gi|323142495|ref|ZP_08077315.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413072|gb|EFY03971.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 97 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIRL R ++Q L + +GI+ + E G V L + +LE +S Sbjct: 6 KLIGRRIRLLRTAKNLTQTGLAKEMGISQTHLCNIECGRVPVTLPNLLKLHSLLECNMSS 65 Query: 73 FF----DVSPTVCSDISSEE 88 FF + + DIS EE Sbjct: 66 FFVDLDEQADAKDKDISLEE 85 >gi|303242620|ref|ZP_07329095.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302589828|gb|EFL59601.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 64 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K++++ R+ +SQE+L E +G+T Q + E G + I + L ++ F Sbjct: 4 KKMKIARIECDLSQEQLAEKVGVTRQTIGMIESGNYNPTLNLCIEICKALNKTLNDLF 61 >gi|269216039|ref|ZP_06159893.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130298|gb|EEZ61376.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 139 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I + R GMSQE+L E LG++ Q V K+E + + ++++ + Sbjct: 6 KIIMLRKKAGMSQEQLAERLGVSRQSVSKWEGSQSMPDMDKAVKLADLFGLSLDSLIRDD 65 Query: 78 PTVCSDISSEE 88 V + + Sbjct: 66 LDVEDGVEAPS 76 >gi|256423763|ref|YP_003124416.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038671|gb|ACU62215.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 113 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 5/107 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I GKR+ R +SQ+++ + +G+ + +YE+ + +I+ LE + + Sbjct: 4 ITFGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIATALEVSLDY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVR 116 + + + + +S D +L F++ D K R Sbjct: 64 LVGNTDLLLDQTILDRIMDIQKLSDQDKADAFKLLDMFLR--DAKAR 108 >gi|229083930|ref|ZP_04216233.1| Transcriptional regulator [Bacillus cereus Rock3-44] gi|228699365|gb|EEL52047.1| Transcriptional regulator [Bacillus cereus Rock3-44] Length = 80 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q++L E +G+T Q + EKG +I L ++ F Sbjct: 17 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLELCLNICYALNQTLNDLF 74 >gi|218709348|ref|YP_002416969.1| putative transcriptional regulator [Vibrio splendidus LGP32] gi|218322367|emb|CAV18518.1| putative transcriptional regulator [Vibrio splendidus LGP32] Length = 101 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R +SQ+ LGE +G+ ++ +YEKG + L+ I++ L P+++ Sbjct: 9 ERLKQARKKAKLSQKALGESIGMDASSASPRMNQYEKGKHAPDVQTLKLIADELGVPLNY 68 Query: 73 F 73 F Sbjct: 69 F 69 >gi|171778203|ref|ZP_02919432.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283027|gb|EDT48451.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 184 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R +SQE++ E L ++ Q + K+E+G + L ++ + + Sbjct: 5 RRLAELRKEKNVSQEEIAEKLYVSRQTISKWERGKTYPDINSLLLMANYFDVSLDHLIKG 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|170751194|ref|YP_001757454.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657716|gb|ACB26771.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 201 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G ++R R +S L GI+ V K E G + + +++ L P Sbjct: 15 SLERALGHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPSLATVNAVAKALNVP 74 Query: 70 ISFFF 74 I+ F Sbjct: 75 ITTLF 79 >gi|46205131|ref|ZP_00209716.1| COG2932: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 77 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR +LG++Q G +G+ + E+G + ++L I++ + Sbjct: 4 LGDRIRERRKLLGLNQTAFGTLVGLDQNTISDLERGKT-LETTKLHEIAQACGVSADWLI 62 Query: 75 DVSPTVCSDISS 86 + + Sbjct: 63 GRTDDPKGGPPT 74 >gi|309778298|ref|ZP_07673226.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308913930|gb|EFP59742.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 373 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GK++ R M+QE+L +G++ V K+E L ++ + + Sbjct: 10 IHLGKKLISLRREANMTQEELATYMGVSKSSVSKWETETTLPDILLLPQLATLFNVSVDE 69 Query: 73 FFDVSPTVCSDISSE 87 P + +E Sbjct: 70 LIGYEPQLSMKAVNE 84 >gi|256379464|ref|YP_003103124.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923767|gb|ACU39278.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 79 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 9/87 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV ++ N IR R GM+Q +L E +G+T Q V E+G Sbjct: 1 MVKPTRVTNS--------IRSLRFARDGMTQAELAERVGVTRQTVIAIEQGRYSPSLEMA 52 Query: 60 QHISEVLESPISFFFDVSPTVCSDISS 86 I+ V + P+ F + + Sbjct: 53 FRIARVFKVPLDDVFHYPEGDVGEGET 79 >gi|229166202|ref|ZP_04293962.1| Helix-turn-helix repressor protein [Bacillus cereus AH621] gi|228617300|gb|EEK74365.1| Helix-turn-helix repressor protein [Bacillus cereus AH621] Length = 71 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|167749383|ref|ZP_02421510.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702] gi|167657664|gb|EDS01794.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702] gi|291556256|emb|CBL33373.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 108 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI RR LG+ Q ++ E + + ++ + E G + + + VL + +F Sbjct: 8 LGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNTTPDYFL 67 Query: 75 DVSPTVC---SDISSEENNVMD 93 + + +DI+S+ + D Sbjct: 68 LGTASAELYDNDIASKITPMTD 89 >gi|158522991|ref|YP_001530861.1| helix-turn-helix domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511817|gb|ABW68784.1| helix-turn-helix domain protein [Desulfococcus oleovorans Hxd3] Length = 387 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ IR R G + +L +G+ + + E+G N A+ + +S L + Sbjct: 10 FIGRNIRKLRRQRGWTISRLAGEIGMAEIPLGRIERGGNAPSAAVIFQLSRALGVSVDTL 69 Query: 74 FDVSPT 79 F + Sbjct: 70 FAEDES 75 >gi|5758923|gb|AAD50896.1|AF169189_1 434-GCN4-linker [Cloning vector pLS3] Length = 138 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 1 MSISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDW 59 Query: 73 FFDVSPTV 80 + + Sbjct: 60 LLNGTSDS 67 >gi|332671809|ref|YP_004454817.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340847|gb|AEE47430.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484] Length = 221 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 2 VGNKKIPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 G++ P V+ VG R+R R G++ ++ + G++ + + E G R Sbjct: 20 AGDRLRPTDVEAALEGVGSRLRALRQDRGLTLAQVADATGVSLSTLSRLESGGRRPTLEL 79 Query: 59 LQHISEVLESPISFFFDVSPT 79 L ++ + P+ D T Sbjct: 80 LLPLAREYQVPLDELVDAPAT 100 >gi|300172531|ref|YP_003771696.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886909|emb|CBL90877.1| Transcriptional regulator, helix-turn-helix XRE-family [Leuconostoc gasicomitatum LMG 18811] Length = 132 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R L MSQE + + L ++ Q V ++E G + L ++E+ + + Sbjct: 7 NQLKKYRSDLNMSQEDVADKLFVSRQAVSRWESGDATPDLTNLIKLTEIFKCSLDSLVLG 66 Query: 77 SPTVCSDISSEENNVMDFISTP 98 S + E + +F P Sbjct: 67 IEETPSKSGTPEIDSSEFTFDP 88 >gi|257485767|ref|ZP_05639808.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130289|ref|ZP_07256279.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012863|gb|EGH92919.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 131 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 8/107 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +SQ L E +G + +YE+G+ G +L I+ + Sbjct: 18 VGAKIKALRKSSTLSQADLAEKIGCEAPLIGRYERGITLPGIEQLIRIATIFNVAPGELL 77 Query: 75 DVSPTVC--------SDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 V ++S + N V S + ++L FI ++ Sbjct: 78 PGGQDVLRTRLISLRQELSEKINQVDSPESLEEIIRLTDKFIAYNNP 124 >gi|38232718|ref|NP_938485.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38198976|emb|CAE48592.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 99 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK ++ + RIR+ R MS+ +L E + + Q + E+G + Sbjct: 13 MSPKKK----LERTIYNRIRVLRTERDMSRAQLAELVDVNPQTIGALERGDHSPSLDLAL 68 Query: 61 HISEVLESPISFFFDVSP 78 I +V PI F P Sbjct: 69 RICDVFNLPIEAIFSRIP 86 >gi|329729091|gb|EGG65502.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] Length = 175 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I+ R ++Q +L L I+ + E +G ++ I++ L +++ Sbjct: 1 MNIGDNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKNLGIKTIEKIAKKLNVSVAY 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + E N Sbjct: 61 LTSGNKMLSDLTEDEINE 78 >gi|309388333|gb|ADO76213.1| transcriptional regulator, XRE family [Halanaerobium praevalens DSM 2228] Length = 375 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 KR++ R +SQ+KL E LG + YE+ + + I++ + + Sbjct: 6 KRLKNIRNQHNLSQKKLAEELGYARTTISNYEQNIRIPSLQTITEIADYFNVSVDYL 62 >gi|300723769|ref|YP_003713076.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] gi|300723780|ref|YP_003713087.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] gi|297630293|emb|CBJ90947.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] gi|297630304|emb|CBJ90958.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] Length = 123 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFDV 76 ++ R LG +Q+++ + +G+ Q ++YE G ++ + I+ L F+ Sbjct: 16 KLAASRKELGFTQQQMADKIGMHVSQYKRYEAGTSQPTIDVFRRIALALNVSADMLLFEP 75 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + + + + + Sbjct: 76 DERGPDERLKLQFEAISQLDEKE 98 >gi|260868456|ref|YP_003234858.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|257764812|dbj|BAI36307.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] Length = 229 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + G SQ +L LG++ Q VQ + G + +L +S + P S+F Sbjct: 9 NRIAMMLKTKGWSQAELARKLGVSAQSVQYWTTGKTFPRSDKLAQLSVISGYPQSWFLGE 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + + D + L+ F D VR +I++VRSI Sbjct: 69 DASSTFSSAEKHHTREDSVVFN---VLDVEFSCGDGTHVRGDLIDVVRSI 115 >gi|228940374|ref|ZP_04102945.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973291|ref|ZP_04133880.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979854|ref|ZP_04140175.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228779869|gb|EEM28115.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228786487|gb|EEM34477.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819500|gb|EEM65554.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941011|gb|AEA16907.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 374 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIANKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 +P + + Sbjct: 64 LISYTPQMEQE 74 >gi|269957018|ref|YP_003326807.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305699|gb|ACZ31249.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 190 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 16/112 (14%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NVG R+R R L ++ L E G+T + + E+ R +L ++ V P+ Sbjct: 10 NVGPRLRAFRQALRLTLSDLAEQTGLTSSTISRLERSQIRPTLEQLLPLARVYGVPLD-- 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN---------RYFIQIDDVKVR 116 + + + + V DGL + + I + R Sbjct: 68 -----ELVAAPAHGDPRVHLRPIRRDGLTFVPLGINRGQLQAYKVIYPPESR 114 >gi|226307935|ref|YP_002767895.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187052|dbj|BAH35156.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 196 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVS 77 +R R G++ E L E G+T + K E+G++ + I+ VL++ + F D Sbjct: 5 LRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGISTPSIAVALKIARVLDADVGQLFSDSM 64 Query: 78 PTVCSDISSEENNVMDFIST 97 I ++ V+D S+ Sbjct: 65 EGNAMTIVRAKDRVIDPASS 84 >gi|210615069|ref|ZP_03290438.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] gi|210150452|gb|EEA81461.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] Length = 179 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R+ ++QE+L ++ + + E+ + + L I + L + ++ Sbjct: 1 MNIGNKIKELRIEKNLTQEELANRAELSKGFISQLERNLTSPSIATLIDILQCLGTNLTE 60 Query: 73 FFDVSPTV 80 FF Sbjct: 61 FFAEESDE 68 >gi|197285395|ref|YP_002151267.1| regulatory protein [Proteus mirabilis HI4320] gi|227355829|ref|ZP_03840222.1| repressor of rdgA and rdgB [Proteus mirabilis ATCC 29906] gi|194682882|emb|CAR43223.1| regulatory protein [Proteus mirabilis HI4320] gi|227164148|gb|EEI49045.1| repressor of rdgA and rdgB [Proteus mirabilis ATCC 29906] Length = 230 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ KR + +R+ LG++Q +L G T Q +++ E G + L +++ L +S+ Sbjct: 1 MSIAKRTKDKRIALGLTQSELATLAGTTQQSIEQLESGKTK-RPRFLPELAKALNCELSW 59 Query: 73 FFDVSPTVCSDISSEENN 90 + + Sbjct: 60 LLEGDNKQTHASEIPPQD 77 >gi|197284430|ref|YP_002150302.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194681917|emb|CAR41287.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 101 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ + RI +R LGM+ ++ L I+ Q + E G ++ L I+ +L Sbjct: 4 INSIIAYRIMQKRKELGMTGREIAHSLEISQQHYSRIENGHTKITVEHLFSIAFILGV 61 >gi|160878668|ref|YP_001557636.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427334|gb|ABX40897.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 114 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L E LG+ V YE N +L +S + + +S Sbjct: 6 RLKQLRQKHKLTQSELAEILGLKPTAVSNYESRRNEPSFEKLIALSRYFDVSCDYLLGIS 65 Query: 78 PTVCSDISSE-ENNVMDFISTPDGLQLNRY 106 + +++DF + L N Sbjct: 66 DAYLPVGGEVLDKDIVDFFNLYQQLDSNNA 95 >gi|148977928|ref|ZP_01814481.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3] gi|145962874|gb|EDK28146.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3] Length = 100 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 9/102 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK----YEKGVNRVGASRLQHISEVLE 67 D + R++ R ++Q+ LG +G+ YEKG + L+ ++E L+ Sbjct: 4 DNPIPARLKAARKKAKITQKDLGVKIGMEQSSASGRMNHYEKGRHVPDIGTLERMAEELD 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 P+++FF S++S+E +D +S + L + Sbjct: 64 VPLNYFF-----CRSELSAELACAIDKMSDEEKAVLLENLNK 100 >gi|146298916|ref|YP_001193507.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146153334|gb|ABQ04188.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 129 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 16/130 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---I 70 ++G++I R + M QE L LG++ Q + E V +L+ I+EVL I Sbjct: 9 HIGRKISRIRELRDMKQEALAYALGMSQQSISIIENSET-VDEEKLKAIAEVLGVSAEGI 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F + + + ++NV++ + + K++EL +V +E Sbjct: 68 KNFSEEAVLNIIGNTYHDSNVVN----------GNAYSC--NFNPLDKMVELFERLVQAE 115 Query: 131 KKYRTIEEEC 140 K E+ Sbjct: 116 KDKVEYLEKL 125 >gi|325688485|gb|EGD30502.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 150 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 10/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R+ G +Q +L E L ++ V K+E N L++++ + + Sbjct: 4 VGERIKKLRIAQGFTQARLAEILHVSKAAVCKWESNTNLPKVMELKNMNSLFHVSADYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ + S E + + YF Q++ + +Q I+ V S +E++ Sbjct: 64 GLANRSAIEQLSSEKKLE---------AMAGYFHQLESPERQQACIDFVIS-QFNEQEAV 113 Query: 135 TIEEE 139 IE E Sbjct: 114 KIEAE 118 >gi|291282703|ref|YP_003499521.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Escherichia coli O55:H7 str. CB9615] gi|290762576|gb|ADD56537.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Escherichia coli O55:H7 str. CB9615] Length = 238 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 + +RIR RR +G++QE++ + +GIT V K+E G ++ Sbjct: 19 ISERIRNRRKDVGLTQEQVAKAIGITRVSVTKWENGSSKPD 59 >gi|224540895|ref|ZP_03681434.1| hypothetical protein CATMIT_00038 [Catenibacterium mitsuokai DSM 15897] gi|224526193|gb|EEF95298.1| hypothetical protein CATMIT_00038 [Catenibacterium mitsuokai DSM 15897] Length = 117 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G I+ RM M+QE + E LG++ Q V K+E G + + L ++ + + Sbjct: 52 KTLGGVIKKHRMECQMTQEFVAETLGVSRQAVSKWENGSSDPSTTNLIALASLFDI 107 >gi|220914255|ref|YP_002489564.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861133|gb|ACL41475.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 210 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 32/75 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++R R G+S +L G++ + + E + LQ +++ L+ P++ F Sbjct: 32 IAAQVRHYRTAAGLSSAELAARTGLSKAMISRVETATTSCSLTTLQRLADGLKVPVTALF 91 Query: 75 DVSPTVCSDISSEEN 89 + T ++ Sbjct: 92 RGADTDRDATFTKSG 106 >gi|217973784|ref|YP_002358535.1| putative phage repressor [Shewanella baltica OS223] gi|217498919|gb|ACK47112.1| putative phage repressor [Shewanella baltica OS223] Length = 243 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGAS--RLQHISEVLESPISF 72 GKRI RR LG+SQ+ + + +GI V +E G N L ++E+L+ + Sbjct: 6 GKRIAERRKELGLSQDVVAKYVGINRVSVSNWETDGKNGTSPKGANLIALAELLKCTPEW 65 Query: 73 FFDVSPTVCSDISSEEN 89 + + E N Sbjct: 66 LLNGEDEALKTENRESN 82 >gi|17158094|ref|NP_478090.1| hypothetical protein pTET3_p18 [Corynebacterium glutamicum] gi|17059613|emb|CAD12221.1| hypothetical protein [Corynebacterium glutamicum] Length = 81 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + I +G RIR R LG+SQE+L G+ V E+G + L Sbjct: 1 MTPDKK----ILIQLGGRIRDVRKSLGISQEELAHLSGMHRTYVSSVERGERNISVLNLL 56 Query: 61 HISEVLESP 69 ++ VL Sbjct: 57 SLAGVLGVD 65 >gi|332652423|ref|ZP_08418168.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] gi|332517569|gb|EGJ47172.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] Length = 75 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN--RVGASRLQHISEVLESPI 70 I G +++ R + GM+QE + +G ++ V K E V + I+EVLE P+ Sbjct: 10 IRFGLKVQYYRKLHGMTQEAFADAIGKSWSFVAKVESPTRPFGVSMETIFKIAEVLEIPV 69 Query: 71 SFFFDV 76 S F+ Sbjct: 70 SKLFED 75 >gi|289664753|ref|ZP_06486334.1| putative DNA binding protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669222|ref|ZP_06490297.1| putative DNA binding protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 66 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|283768814|ref|ZP_06341725.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104600|gb|EFC05973.1| DNA-binding protein [Bulleidia extructa W1219] Length = 331 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQE+L + L ++ Q V K+E + +++ +S+V + Sbjct: 6 KIITLRKKNGWSQEELADQLEVSRQSVSKWEGAQSIPDMNKILKLSKVFGVSTDYLLKDE 65 Query: 78 PTVCSDISSEENN 90 + + + E + Sbjct: 66 IVIAENETQPETD 78 >gi|229020917|ref|ZP_04177610.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] gi|229022840|ref|ZP_04179361.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228738451|gb|EEL88926.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228740379|gb|EEL90684.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] Length = 107 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE-ENNVMDFIST 97 T S + SE V D +S+ Sbjct: 62 LHDETTTESHLDSEWTQLVKDAMSS 86 >gi|228477619|ref|ZP_04062252.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250763|gb|EEK09961.1| conserved domain protein [Streptococcus salivarius SK126] Length = 69 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R LG+SQ +L + +G++ Q + E ++++ L++ ++ F Sbjct: 4 VREFRKNLGLSQLELAKSIGVSRQTINMIENNKYNPTLELCLNLAKALDTDLNSLF 59 >gi|188584169|ref|YP_001927614.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179347667|gb|ACB83079.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 209 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 14/113 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSI--- 82 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S+E ++ S D +L DD KVR II ++++ Sbjct: 83 ------ERVLATSDEEPFIERFSRADTPRLVS-----DDGKVRLAIIGWIKTV 124 >gi|169832395|ref|YP_001695343.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] gi|168994897|gb|ACA35509.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] Length = 299 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ G+T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|168211008|ref|ZP_02636633.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710935|gb|EDT23117.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 330 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 4/129 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R +SQ +L E LG+ + YE+ L +S+++ I ++ Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMNRSIDSLLGLN 71 Query: 78 PTVC--SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVRSIVSSEKKY 133 + +D+++ + + FI + N+ F +++ K+R + EL R+ +E Sbjct: 72 HSTENTNDLNNSDLSKKIFILNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDI 131 Query: 134 RTIEEECMV 142 + E Sbjct: 132 KLFRELSKE 140 >gi|26988956|ref|NP_744381.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983771|gb|AAN67845.1|AE016415_10 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 177 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +V +R R G+SQ L E G++ + + E G V + L I+E L Sbjct: 4 HVSLNVRSLRNAAGLSQAALAERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGV 58 >gi|192360811|ref|YP_001984256.1| Helix-turn-helix domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686976|gb|ACE84654.1| Helix-turn-helix domain protein [Cellvibrio japonicus Ueda107] Length = 152 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R+ G SQE+L E G++ + +Q+ E+G + G ++ ++ V E + F + Sbjct: 3 VRKLRLQRGWSQEQLAELTGLSIRTIQRIERGS-KPGLETIKSLASVFEVDPATFESGAD 61 Query: 79 TVCSD 83 + Sbjct: 62 DMSEQ 66 >gi|168212348|ref|ZP_02637973.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170716147|gb|EDT28329.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 348 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 7 IKEKRNAQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKVDLN 59 >gi|153932210|ref|YP_001385236.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152928254|gb|ABS33754.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] Length = 92 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ R ++QE+LG+ L ++ Q + YE + L ++ + + + Sbjct: 3 GDRLKELREEKQLTQEELGKFLNVSRQAISSYESEETEPSINNLIKLANIFNISLDYL 60 >gi|153811887|ref|ZP_01964555.1| hypothetical protein RUMOBE_02280 [Ruminococcus obeum ATCC 29174] gi|149832021|gb|EDM87106.1| hypothetical protein RUMOBE_02280 [Ruminococcus obeum ATCC 29174] Length = 122 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G+ QE L LGIT Q + KYE+ V + L+ I+ + + Sbjct: 3 SRIKQLREKRGLIQEILAAELGITQQMLSKYERDVTFIKVDILKKIAVYFNVTTDYLLGL 62 Query: 77 SP 78 S Sbjct: 63 SE 64 >gi|126699658|ref|YP_001088555.1| putative regulatory protein [Clostridium difficile 630] gi|255101172|ref|ZP_05330149.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|115251095|emb|CAJ68926.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 120 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 15/111 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI++ R+ G++QE + + +T + E G +V L I+ L + Sbjct: 8 IGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVDTL- 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + V S E D S D ++ + ++EL++S Sbjct: 67 -LCDNVLSSKVIFEKEAKDIFSDCDEYEI-------------RSLVELLKS 103 >gi|70734303|ref|YP_257943.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68348602|gb|AAY96208.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 209 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 3 GNKKIPNP-VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + +P +D VG R+R R ++ ++L E G+ + K E V +L Sbjct: 9 ASSSHAHPLIDRTQVGARLRTIRKNQKLTLKQLSERSGVALSTLSKMELAQVSVSYEKLA 68 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE 87 + L I+ F +P + ++ Sbjct: 69 AAARALGVDIARLFTPAPNLIQTGGAQ 95 >gi|70729981|ref|YP_259721.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344280|gb|AAY91886.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 187 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V +R R G+SQ L E ++ + + E G V L ++E L+ S Sbjct: 14 HVSLNVRRLRNAAGLSQSALAEKSNVSRRMLVAIEAGEKNVSLGTLDRVAEALDVAFSDL 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + S +E + L L + Sbjct: 74 IQAPESRDSSRINELAWAGAIPGSK-ALLLAKA 105 >gi|85711364|ref|ZP_01042423.1| putative DNA-binding protein [Idiomarina baltica OS145] gi|85694865|gb|EAQ32804.1| putative DNA-binding protein [Idiomarina baltica OS145] Length = 174 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 15/124 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R++ R G S E G++ + + E+ + + L ++ +S+ Sbjct: 8 VARRLKKLRKDKGWSLTACAEHTGVSKAMLGQIERQESSPTLATLWKLATGFNVSLSWLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ DF ++ F D + +Q++ +L + + + Sbjct: 68 ND---------EQQPMTFDFAHERIQVERLLAF----DPQTQQEVYKL--CMAEGAQSHS 112 Query: 135 TIEE 138 Sbjct: 113 DAHR 116 >gi|116495520|ref|YP_807254.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|191638999|ref|YP_001988165.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|227533926|ref|ZP_03963975.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239629921|ref|ZP_04672952.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067057|ref|YP_003789080.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116105670|gb|ABJ70812.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|190713301|emb|CAQ67307.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|227188441|gb|EEI68508.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527533|gb|EEQ66534.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439464|gb|ADK19230.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] gi|327383053|gb|AEA54529.1| DNA-binding protein [Lactobacillus casei LC2W] gi|327386239|gb|AEA57713.1| DNA-binding protein [Lactobacillus casei BD-II] Length = 103 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 N+GK + +R L ++ EKL E G++ + + E+G VN + +L I+ L + Sbjct: 4 NIGKLVHQQRRSLNLTIEKLAERSGVSISLISRMERGDVNNISIKKLTDIARALNMQVGD 63 Query: 73 FF 74 FF Sbjct: 64 FF 65 >gi|319936291|ref|ZP_08010709.1| hypothetical protein HMPREF9488_01542 [Coprobacillus sp. 29_1] gi|319808667|gb|EFW05211.1| hypothetical protein HMPREF9488_01542 [Coprobacillus sp. 29_1] Length = 142 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-----VQKYEKGVNRVGASRLQHISEVLE 67 +N+GKRI+ RM+ GM QE+L +G+ + + + +YE G L+ ISE L Sbjct: 1 MNIGKRIKYVRMLRGMRQEELAGKVGLGYNENGRTRISQYENGKRTPKEDMLEKISEALN 60 Query: 68 SPISFF 73 + Sbjct: 61 VESYYL 66 >gi|302529249|ref|ZP_07281591.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] gi|302438144|gb|EFL09960.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] Length = 79 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G+S+ +L + LG+ +Q + E+G I+E E + F Sbjct: 7 NRIAVLRAERGISRRQLADALGVHYQTIGYLERGEYSPSLYLALRIAEFFEVAVEVLFST 66 Query: 77 SP 78 +P Sbjct: 67 AP 68 >gi|288942496|ref|YP_003444736.1| XRE family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288897868|gb|ADC63704.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 132 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 17/126 (13%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQ 60 + N KI + +G+R+R R +S L ++ ++ YE+G+ R+G Sbjct: 1 MHNIKITMDLTKRIGQRLRSARHEQKLSLADLSARTNSLSKSRISNYEQGIRRMGLEEAH 60 Query: 61 HISEVLE-SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +S L ++ + +S + L+L +F + D + R+ + Sbjct: 61 ELSVALGTVTPTYLLCLDDRG-------------PLSDRE-LELIDHFRR-TDERGRETL 105 Query: 120 IELVRS 125 + L RS Sbjct: 106 LSLARS 111 >gi|94310168|ref|YP_583378.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354020|gb|ABF08109.1| transcriptional regulator, XRE family with shikimate kinase activity [Cupriavidus metallidurans CH34] Length = 316 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P ++G+RIR R GMS++ L ++ + + E G L+ ++ L+ Sbjct: 24 DPYLTHLGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVANALDV 83 Query: 69 PI 70 P+ Sbjct: 84 PL 85 >gi|295110810|emb|CBL24763.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 71 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G+ QE L LGIT Q + KYE+ V + L+ I+ + V Sbjct: 3 SRIKQLREKRGLIQEILAAELGITQQMLSKYERDVTLIKVDILKKIATYFNVTTDYLLGV 62 Query: 77 SP 78 S Sbjct: 63 SD 64 >gi|320007854|gb|ADW02704.1| transcriptional regulator, XRE family [Streptomyces flavogriseus ATCC 33331] Length = 509 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK IR R G +Q +L E L + V + E+G + + I E L+S I Sbjct: 9 IGKLIRDARQHRGWTQSQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEI 64 >gi|258621267|ref|ZP_05716301.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] gi|258586655|gb|EEW11370.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] Length = 211 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 40 QIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 99 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S ++ Sbjct: 100 FANDPQLLSSERSFPDDP 117 >gi|317054347|ref|YP_004118372.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952342|gb|ADU71816.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 200 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V V R+R +R +S ++L G++ + + EKG + L I+ L Sbjct: 16 DHVSAAVSSRVRTQRKEQKLSLDELARRAGVSKGMLVEVEKGDANPSIAILCKIAAALGL 75 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 ++ DVS + + + ++ + + G Sbjct: 76 SVADMVDVSDEPLAHLIAAQDMPILWQGEKGG 107 >gi|260587052|ref|ZP_05852965.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542542|gb|EEX23111.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 215 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 6/77 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I R G+SQ+ ++ Q V +E G + + IS+ + + Sbjct: 1 MNIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISV-- 58 Query: 73 FFDVSPTVCSDISSEEN 89 + +D+ SEE Sbjct: 59 ----DELLRNDVQSEEK 71 >gi|225575462|ref|ZP_03784072.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] gi|225037314|gb|EEG47560.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] Length = 145 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R G+SQ++L E + +T Q V ++E G L+ +S++ + I+ Sbjct: 7 ISELRKEYGLSQDELAEKVYVTRQAVSRWETGETIPNIETLKLLSKLFDVSIN 59 >gi|183981401|ref|YP_001849692.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174727|gb|ACC39837.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 473 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + S L ++E + P +F Sbjct: 7 GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLPTHYFAP 66 Query: 76 VSPT 79 S Sbjct: 67 DSDA 70 >gi|148985572|ref|ZP_01818761.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|147922292|gb|EDK73413.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|301800751|emb|CBW33399.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] Length = 299 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ G+T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|126466145|ref|YP_001041254.1| helix-turn-helix domain-containing protein [Staphylothermus marinus F1] gi|126014968|gb|ABN70346.1| helix-turn-helix domain protein [Staphylothermus marinus F1] Length = 296 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS---FF 73 ++ R +R+ LG+S +L + +G+T + + YE G V + I+E++ + Sbjct: 134 EKFREKRIELGLSLGELADKIGVTRKAIYNYEHGKIGVTINTAIKIAEIMGIDVFKPVDL 193 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 F + S N + + + Sbjct: 194 FKPEKIEVKEEFSPRNKIEELL 215 >gi|121534819|ref|ZP_01666639.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] gi|121306614|gb|EAX47536.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] Length = 215 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 32/83 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R G++Q+++ + LGI YE + L +++ + + Sbjct: 2 LGERLKSLREQKGITQQEMADILGIARGTYAHYEIDRREPDNATLSRLADFFGVSVDYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 S + + +S Sbjct: 62 GRDKPKPSITDLFPDAIPADLSN 84 >gi|21228496|ref|NP_634418.1| MerR family transcriptional regulator [Methanosarcina mazei Go1] gi|20906980|gb|AAM32090.1| transcriptional regulator, MerR family [Methanosarcina mazei Go1] Length = 192 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 11/107 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +IR R M+ E+L E + + +Q+ E G + L I+ L + F Sbjct: 7 VGSKIRQLREARDMTVEELAEASQSSSELIQQLENGALVPSLTPLLKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDI--SSEENNVMDFISTPD-----GLQLNRYFIQIDDVK 114 D P + S NV+ F + L+ F + K Sbjct: 67 DDMPQSGPVLVRSGLSENVVRFSGKTERPKKSALE----FYSLASDK 109 >gi|95931307|ref|ZP_01314023.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95132638|gb|EAT14321.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 219 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ N+G +I+ R ++ + + G + + + E + L ++ + Sbjct: 32 NVLEYNIGAKIKELRKARKLTLQAVATETGFSPALISQIENNNVSPPIATLSKLARFFDV 91 Query: 69 PISFFF 74 IS FF Sbjct: 92 KISHFF 97 >gi|302670016|ref|YP_003829976.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394489|gb|ADL33394.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 210 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 5/125 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R+ ++QE + E LGIT Q V K+E+G + + L ++ + E+ + + Sbjct: 6 ANLKKYRIQKDLTQEDVAEFLGITAQSVSKWERGESYPDITLLPALANIFETSVDLLLGM 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ----IDDVKVRQKIIELVRSIVSSEKK 132 + + + + I K I+ L ++ + Sbjct: 66 DTIRAEQTRLDIHKKAISFQRSGNYDMAEKTYREALLIYPNKP-GMILGLASTLALKGET 124 Query: 133 YRTIE 137 IE Sbjct: 125 EEAIE 129 >gi|293606756|ref|ZP_06689108.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] gi|292814847|gb|EFF73976.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] Length = 184 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R +S E+L + G+T + K E+G++ S + ++E +S Sbjct: 7 RLRTLRRQQALSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVSQL---- 62 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ 102 D + +E + ++ + LQ Sbjct: 63 -VGADDAAQDEVVSVVRVADREALQ 86 >gi|289450287|ref|YP_003474554.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184834|gb|ADC91259.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 243 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 9 NP-VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 NP + +G IR R L ++Q LG + V KYE G + L I+ L Sbjct: 7 NPDISPIIGDNIRFFRKRLKLTQSDLGSLINKGKATVAKYESGQIILDVQTLYEIARALG 66 Query: 68 S 68 Sbjct: 67 V 67 >gi|284044033|ref|YP_003394373.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948254|gb|ADB50998.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 182 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 6/93 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R ++ L E + +T + + E+G+ L + EVL+ P+ Sbjct: 5 QIGERLRAARQRQELTLSALAERVELTKGFLSQVERGLTSPSVGSLLRLCEVLDLPVGEL 64 Query: 74 FDVSPTVCSDISSEE------NNVMDFISTPDG 100 FD +P + V +F TP G Sbjct: 65 FDANPAPLVRAAERSPISFGGAGVDEFQLTPAG 97 >gi|269120006|ref|YP_003308183.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268613884|gb|ACZ08252.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 142 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPI 70 + ++ R++ +R+ L S + L + GIT +Q+YE G N++ +L+ I++ L+ Sbjct: 3 NKDIANRMKRQRLNLEYSYKDLEKITGITASTLQRYETGAINKLPIDKLEVIAKALKVSP 62 Query: 71 SFFFDVSPTVCSDISSEE--NNVMDFISTPDGLQ 102 S+ + ++++ + + +S + + Sbjct: 63 SYLMGWEDEKGNPLTNKSKITDPISQLSKKEKFE 96 >gi|282599906|ref|ZP_05972292.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567565|gb|EFB73100.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 108 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I R +S +LG +G++ QQ+ +YE G+ + S L + L + FF Sbjct: 22 IASLRRKRLLSGRQLGSLIGVSQQQISRYENGICEITLSTLCILLHYLGVSLETFF 77 >gi|157145741|ref|YP_001453060.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] gi|157082946|gb|ABV12624.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] Length = 191 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ + RIR+ R G S +L E G++ + K E+G + A+ L +S Sbjct: 4 IEDSINQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|157145722|ref|YP_001453041.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895] gi|157082927|gb|ABV12605.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895] Length = 178 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R S +L E G++ + + E+ + S L I+ L P S F +SP Sbjct: 12 LKALRQQREWSLSRLAEATGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSTF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 D+ + + + TP Sbjct: 70 PEAEDLPTFDPQQQAMVITP 89 >gi|167038622|ref|YP_001666200.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117013|ref|YP_004187172.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857456|gb|ABY95864.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930104|gb|ADV80789.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 74 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFDV 76 + R ++QE+L + LGI+ + YE G SR + I++ P+ FF D+ Sbjct: 4 LAELRKSRRLTQEQLSKLLGISKSSIAMYETGQRVPSLSRAKKIAKFFNVPVEKIFFGDI 63 Query: 77 SPT 79 + T Sbjct: 64 NHT 66 >gi|301382108|ref|ZP_07230526.1| peptidase [Pseudomonas syringae pv. tomato Max13] Length = 151 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 10/95 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K +G R++L R G++Q +L E +G++ + + E+G A Sbjct: 1 MSGAKNSST-----LGGRVKLARDATGLTQLELAELVGVSQAAISEIERGE---SARTAY 52 Query: 61 --HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 IS + I + S+ V + Sbjct: 53 LPEISRACGADIQWLAFGGERPASEPCEPAPTVAE 87 >gi|210611267|ref|ZP_03288822.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] gi|210152031|gb|EEA83038.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] Length = 122 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 17/125 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +GKRI+ R LG++QE+ E G T + E+G + L + LE Sbjct: 13 IDKRIGKRIKQCRERLGLTQEEFAEKTGFTANYISTLERGASFPRCENLILLLNALEVSA 72 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 F DV +++ +N + +S V + +I+++V ++ Sbjct: 73 DAIFCDVLDHTTEYKATQLSNELGTLS----------------VDAQNRILQIVELLIRQ 116 Query: 130 EKKYR 134 EK+ Sbjct: 117 EKENE 121 >gi|330971410|gb|EGH71476.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 114 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 42/94 (44%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 KI D +G+ I RR LG++Q++L E L + + + E G + +L +S Sbjct: 3 KIIAAADKQIGQMIAKRRRALGLTQDQLAERLSMGREAYSRLELGKTSLSVPKLIQLSGA 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 L+S ++ +D + ++ +S D Sbjct: 63 LDSGLAELVTDFSPRPTDQGHKIGLLLAPLSDAD 96 >gi|326391782|ref|ZP_08213301.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992170|gb|EGD50643.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 88 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I++G +I+ R+ +SQ +L + + + E G +L +I+E LE P+ Sbjct: 1 MNISIGTKIKSLRLQKKLSQSELCGNF-MNRVVLSRIENGKALPSLEQLIYIAEKLEVPV 59 Query: 71 SFFFDVSPTVC 81 S+FF Sbjct: 60 SYFFSDLKDTS 70 >gi|304405221|ref|ZP_07386881.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346100|gb|EFM11934.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 127 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI R G +QE+ LGI+ + YEK L +++ I F Sbjct: 1 MNIGTRIAHLREQRGWTQEQTSHSLGISRAALSHYEKNRREPDTETLTKFADLFNVTIDF 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|295697361|ref|YP_003590599.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412963|gb|ADG07455.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 143 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G +++ R G + E+L G++ + E+G + ++ LE P++ F Sbjct: 6 GVKLKQLRTERGWTLEQLSARSGLSISHISSLERGTRMKPSFQVAVRLARALEVPLATFL 65 Query: 75 DVSPTVCSD-ISSEENNVMDFISTPDG 100 + + SD + + +F+S D Sbjct: 66 EDAGKEESDPLEHLPPEIREFVSREDA 92 >gi|253315441|ref|ZP_04838654.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|315130180|gb|EFT86168.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus CGS03] Length = 61 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R+ L M+Q++L +G+T Q + EKGV+ S ++I VL + F P Sbjct: 1 MKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIFGEKP 60 >gi|228990384|ref|ZP_04150349.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] gi|228996484|ref|ZP_04156123.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|229004136|ref|ZP_04161937.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228756997|gb|EEM06241.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228763116|gb|EEM12024.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|228768910|gb|EEM17508.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 + + SE Sbjct: 62 LHDEIPSENQLDSE 75 >gi|257414283|ref|ZP_04745847.2| putative transcriptional regulator [Roseburia intestinalis L1-82] gi|257200563|gb|EEU98847.1| putative transcriptional regulator [Roseburia intestinalis L1-82] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+RI+ R M++++L E +G++ ++K E GVN L I+E+ + + Sbjct: 9 GERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHISLDYL 66 >gi|212694772|ref|ZP_03302900.1| hypothetical protein BACDOR_04305 [Bacteroides dorei DSM 17855] gi|237710957|ref|ZP_04541438.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|237727255|ref|ZP_04557736.1| transcriptional regulator [Bacteroides sp. D4] gi|265750545|ref|ZP_06086608.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] gi|212662626|gb|EEB23200.1| hypothetical protein BACDOR_04305 [Bacteroides dorei DSM 17855] gi|229434111|gb|EEO44188.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|229454801|gb|EEO60522.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|263237441|gb|EEZ22891.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] Length = 191 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S +L G+ +Q+++ E V+ + L I+ L + F Sbjct: 7 VGEKIKSLRETKEISVAELAVRSGLAEEQIERIENNVDLPSLAPLIKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D + I ++ + + + + L Sbjct: 67 DDQEEQGAVICRKQESEDTISFSNNAMDL 95 >gi|163761507|ref|ZP_02168579.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica DFL-43] gi|162281221|gb|EDQ31520.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica DFL-43] Length = 480 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R G++Q LGI+ + + E V AS L ++E I+ Sbjct: 6 LFIGGKIRAIRGEQGLTQAGFATKLGISTSYLNQIENNQRHVSASVLLALAEAFSVDITT 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 D +V + ++ P Sbjct: 66 L------SDQDTDRLLADVSEALADP 85 >gi|117621210|ref|YP_858380.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562617|gb|ABK39565.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 230 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 41/98 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++ +R++ R LG S + G++ + + E+G + + L I+ Sbjct: 45 MNQHLAQRLKGLRSELGWSLDVAARETGVSKAMLGQIERGESSPTVATLWKIATGFRVSF 104 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 S F + +P ++ + + +G+Q+ F Sbjct: 105 SSFIEPTPAEQGEVLYRTADAIRQQPAGEGMQVAPLFP 142 >gi|15887791|ref|NP_353472.1| putative phage repressor [Agrobacterium tumefaciens str. C58] gi|15155365|gb|AAK86257.1| putative phage repressor [Agrobacterium tumefaciens str. C58] Length = 231 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R+ G+ L E G++ V +E+G N + LQ IS+ L Sbjct: 10 IGQAIRTARIRRGLVMRDLAEAGGVSTGAVGNWERGANAIAMEHLQAISQKLRIDPVALS 69 Query: 75 DVSPT--VCSDISSEENNVMDF 94 + S + ++ V DF Sbjct: 70 NGSLRYLDEEEALADAEQVTDF 91 >gi|328463792|gb|EGF35345.1| hypothetical protein AAULH_12086 [Lactobacillus helveticus MTCC 5463] Length = 140 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R SQ +L + + Q + YE G Q +++ + + Sbjct: 2 NRIKELRQENKFSQIELANKVHASNQAISAYESGTREPKEPMWQALADFFNVSVDYL 58 >gi|317498013|ref|ZP_07956317.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894689|gb|EFV16867.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 136 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +++ R G +QE+L + + Q + K+EKG++ A L +++VLE +S ++ Sbjct: 4 ENLKIIRKAKGYTQEELAIKIHVVRQTISKWEKGLSVPDADTLSKLADVLEIKVS---EL 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL-NRYFIQI 110 + + +++ + L L NR +I Sbjct: 61 LGSEIKEETNKNEVAEQLAKISEQLALKNRRHKRI 95 >gi|317498577|ref|ZP_07956870.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894064|gb|EFV16253.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 217 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G++IR R +G++Q KL E GI ++KYE + +L+ I+ L+ Sbjct: 1 MTIGEKIRYCREQIGITQGKLAELTGIHPVSIRKYETNKMQPQPPQLEKIAAALDVS 57 >gi|302380010|ref|ZP_07268489.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302312236|gb|EFK94238.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] Length = 174 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L + + Q V K+E+G++ + L +SE+L + +S Sbjct: 4 ENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVLLGE 63 Query: 77 SPTVCSDIS 85 + Sbjct: 64 NIEEIQQTE 72 >gi|237794603|ref|YP_002862155.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|229262963|gb|ACQ53996.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] Length = 136 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++QE+LG+ +G+T V YE + L I+E F Sbjct: 2 LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFLL 61 Query: 75 DVSP 78 + Sbjct: 62 NTEE 65 >gi|225387513|ref|ZP_03757277.1| hypothetical protein CLOSTASPAR_01266 [Clostridium asparagiforme DSM 15981] gi|225046443|gb|EEG56689.1| hypothetical protein CLOSTASPAR_01266 [Clostridium asparagiforme DSM 15981] Length = 86 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R GM+QE+LGE +G + Q + E IS V I F F Sbjct: 3 NRIKELRERRGMTQEQLGEMVGTSRQAINAIETEKFEPSIWLAYDISRVFGCAIEEVFLF 62 Query: 75 DVS 77 S Sbjct: 63 GES 65 >gi|138896745|ref|YP_001127198.1| prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196249440|ref|ZP_03148138.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134268258|gb|ABO68453.1| Prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196211197|gb|EDY05958.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 137 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R +QE+L E L ++ Q+ K+E G L+ + + F Sbjct: 5 LGEMLKRLRKQQRWTQEQLAEQLNVSRSQISKWENGSTLPDIQSLEKLCRLFNVSADFL 63 >gi|38257067|ref|NP_940721.1| Orf36 [Pseudomonas syringae pv. syringae] gi|37723844|gb|AAR02170.1| Orf36 [Pseudomonas syringae pv. syringae] Length = 115 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 11/115 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G RI+ R G++Q L E + + +YE+ +L ++E Sbjct: 3 SIRKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAETAPDGEQLIKMAE----- 57 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 FF++SP + + + + L R I+D +++I + + Sbjct: 58 ---FFEISPMDLLPVKIDLKLQAVLDLRSELIDLVR---TINDPSQLERLIGVAK 106 >gi|332530423|ref|ZP_08406367.1| XRE family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040135|gb|EGI76517.1| XRE family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 113 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISE 64 +P + G R+R R+ + Q+KLG +G+ ++ +YE G + I++ Sbjct: 15 HPASVF-GLRLRQARIQADIPQDKLGVAIGLDETTASARISRYETGTHAAPYDLAVKIAK 73 Query: 65 VLESPISFFF 74 VL P +F F Sbjct: 74 VLNVPPTFLF 83 >gi|228920080|ref|ZP_04083429.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839536|gb|EEM84828.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 69 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|197336241|ref|YP_002155779.1| transcriptional regulator, XRE family [Vibrio fischeri MJ11] gi|197317731|gb|ACH67178.1| transcriptional regulator, XRE family [Vibrio fischeri MJ11] Length = 100 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 9/94 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R ++Q++LG +G+ ++ YEKG + S LQ +++ L P+S+ Sbjct: 9 KRLKEARKHAKVTQKELGIRIGMEESSASGRMNHYEKGRHTPDISVLQRMAKELGVPLSY 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF SD +E N ++ +S + ++L + Sbjct: 69 FF-----CESDSLAELNLLIGKMSEEERVKLIKS 97 >gi|170739100|ref|YP_001767755.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193374|gb|ACA15321.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R + G+SQ L GI + E G L+ I + + ++ FF Sbjct: 6 VGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEFF 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 + PT +++ Sbjct: 66 SLEPTRTEKAFYAAEELVEI 85 >gi|15894128|ref|NP_347477.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15023733|gb|AAK78817.1|AE007599_13 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508255|gb|ADZ19891.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 179 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R+ ++QE+L ++ + + E+ + + L I + L + + Sbjct: 1 MDIGEKIKRLRIEKQLTQEELANRCELSKGFISQIERNLTSPSIATLTDILDALGTNLPD 60 Query: 73 FFDVS 77 FF Sbjct: 61 FFKED 65 >gi|302387998|ref|YP_003823820.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198626|gb|ADL06197.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 93 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 12 DINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +V G RI+ R G +QE L E + I +++ K E+GV + + SE + Sbjct: 4 DQHVCGARIQELRKSKGYTQEALAEAIDIDAKRISKIERGVISASYNDMILFSEFFGVTL 63 Query: 71 SFF 73 + Sbjct: 64 DYL 66 >gi|228984217|ref|ZP_04144399.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775504|gb|EEM23888.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 124 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLSEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVM 92 + + + + Sbjct: 65 DEELTQKVIEDSKQLA 80 >gi|170755295|ref|YP_001781771.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169120507|gb|ACA44343.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] Length = 149 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI+ R ++QE+L + +G++ V YE + L I++ + Sbjct: 4 ERIKKLRKERDITQEELAKNIGVSTSMVGMYETNARKPSYEVLSKIAKYFRVSTDYL 60 >gi|206972991|ref|ZP_03233913.1| dna-binding protein [Bacillus cereus AH1134] gi|229194134|ref|ZP_04320999.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206731875|gb|EDZ49075.1| dna-binding protein [Bacillus cereus AH1134] gi|228589350|gb|EEK47304.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +IN+G++I + R G++ ++L E IT + + EKG+ L+ IS L + Sbjct: 3 NINIGEKIMIFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISAALNIALF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 +FF + + T + + + + F Sbjct: 63 NFFLEDTITEELVVRANQRKKITF 86 >gi|170718159|ref|YP_001785187.1| phage repressor [Haemophilus somnus 2336] gi|168826288|gb|ACA31659.1| putative phage repressor [Haemophilus somnus 2336] Length = 235 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR +R L +++ +L + + ++ +Q +E AS + I+ L ++ Sbjct: 11 IGNRIREQRERLNLTRPELAKAVDVSLSALQGWEMNEREPQASMIITIANELGVTPNYLL 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + T + + + + I+ Sbjct: 71 TGENDQPKKTIERAVEKVKDL-TENVVIMIASYSSIN 106 >gi|333028514|ref|ZP_08456578.1| putative transcriptional regulatory protein [Streptomyces sp. Tu6071] gi|332748366|gb|EGJ78807.1| putative transcriptional regulatory protein [Streptomyces sp. Tu6071] Length = 212 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 30/80 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R R G + + L G++ + + E+ + +++ L I Sbjct: 28 RTLARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADALGVSIPT 87 Query: 73 FFDVSPTVCSDISSEENNVM 92 D P I EE+ V+ Sbjct: 88 LLDQVPGPRVRIVPEEDAVV 107 >gi|331090228|ref|ZP_08339116.1| hypothetical protein HMPREF1025_02699 [Lachnospiraceae bacterium 3_1_46FAA] gi|330402174|gb|EGG81746.1| hypothetical protein HMPREF1025_02699 [Lachnospiraceae bacterium 3_1_46FAA] Length = 346 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 31/53 (58%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR +R L ++QE++ E LG++ V K+EKG + L ++ +L+ ++ Sbjct: 7 IREKRKELSLTQEQIAELLGVSTPAVNKWEKGSTYPDITLLPALARLLKIDLN 59 >gi|295101241|emb|CBK98786.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 74 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R ++Q ++ + + YEKG R+ L +++ + +++ V Sbjct: 5 ERIKALRSDHDLNQTQVARAIHVAQTTYSDYEKGKVRIPVECLIQLAKFYDVDMNYITGV 64 Query: 77 SPT 79 S T Sbjct: 65 SDT 67 >gi|302517812|ref|ZP_07270154.1| transcriptional regulatory protein [Streptomyces sp. SPB78] gi|318061036|ref|ZP_07979757.1| transcriptional regulatory protein [Streptomyces sp. SA3_actG] gi|302426707|gb|EFK98522.1| transcriptional regulatory protein [Streptomyces sp. SPB78] Length = 193 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 30/80 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R R G + + L G++ + + E+ + +++ L I Sbjct: 9 RTLARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADALGVSIPT 68 Query: 73 FFDVSPTVCSDISSEENNVM 92 D P I EE+ V+ Sbjct: 69 LLDQVPGPRVRIVPEEDAVV 88 >gi|254498006|ref|ZP_05110769.1| phage repressor [Legionella drancourtii LLAP12] gi|254352783|gb|EET11555.1| phage repressor [Legionella drancourtii LLAP12] Length = 227 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R I G++++ L E + ++ YE+G G ++ +++VLE +F Sbjct: 7 IGQRIKHERTIKGLTRKALAELTDSLKISRINNYERGERTPGPEEIKQLAKVLEVSPAFL 66 Query: 74 F 74 Sbjct: 67 M 67 >gi|206975640|ref|ZP_03236552.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] gi|206746102|gb|EDZ57497.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] Length = 110 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ L ++QE L E + I+ + + E+G + L ++ L + + Sbjct: 6 LGNRIREERLKLNLTQEILAEDINISVSYMGQIERGERNLSLDTLVKLAYRLSVTVDYLL 65 Query: 75 DVSPTVCSDISSEE-NNVMDFISTPDG 100 S ++ S ++ +++D S + Sbjct: 66 LDSVQANNENSIKQFASLIDGRSQKET 92 >gi|154498443|ref|ZP_02036821.1| hypothetical protein BACCAP_02432 [Bacteroides capillosus ATCC 29799] gi|150272511|gb|EDM99696.1| hypothetical protein BACCAP_02432 [Bacteroides capillosus ATCC 29799] Length = 210 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI R GMSQE+LGE LG++ Q V K+E G + + + E+ + Sbjct: 5 ERIAAARRAAGMSQEQLGEALGVSRQAVSKWESGQTKPDLEAVGKMCELFHLSADYLLLG 64 Query: 77 SPTVCSD 83 D Sbjct: 65 KEEKKDD 71 >gi|313575261|emb|CBI71200.1| hypothetical protein [uncultured bacterium] Length = 75 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + IR R G M+Q++L + +G+T Q + E+ I+EV PI Sbjct: 6 ISNSIRRLRFDHGEMTQQELADRIGMTRQTIAAIEQNKYSPSLEAAFRIAEVFGVPIGDV 65 Query: 74 F 74 F Sbjct: 66 F 66 >gi|239983769|ref|ZP_04706293.1| transcriptional regulator [Streptomyces albus J1074] gi|291455574|ref|ZP_06594964.1| transcriptional regulator [Streptomyces albus J1074] gi|291358523|gb|EFE85425.1| transcriptional regulator [Streptomyces albus J1074] Length = 200 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 6 DELDGLVRKRIRALRLAQGWSLEELAGRANLSQSSLSRIENGRRRLALDQLVTLARALDT 65 Query: 69 PISFFFDVSPT 79 + + + Sbjct: 66 TLDQLVETASD 76 >gi|237750719|ref|ZP_04581199.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373809|gb|EEO24200.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 243 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G++Q L + G++ +Q YE + L+ I+ L+ + Sbjct: 1 MKLGLKIKTAREEKGLTQNDLVKISGVSRASLQLYEADKGNITLDNLEKIANALDYEVVH 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|229029051|ref|ZP_04185150.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] gi|228732331|gb|EEL83214.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE-ENNVMDFIST 97 T + + SE V D +S+ Sbjct: 62 LHDETTKENHLDSEWTQLVKDAMSS 86 >gi|229166214|ref|ZP_04293974.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] gi|228617312|gb|EEK74377.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE-ENNVMDFIST 97 T S + SE V D +S+ Sbjct: 62 LHDETTTESHLDSEWTQLVKDAMSS 86 >gi|229199677|ref|ZP_04326322.1| hypothetical protein bcere0001_51600 [Bacillus cereus m1293] gi|228583823|gb|EEK41996.1| hypothetical protein bcere0001_51600 [Bacillus cereus m1293] Length = 139 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFD 75 K+++ R G+SQE+L L I + YE +R SRL I++ + F Sbjct: 5 KKLKELREGKGLSQEELALKLNIPRSSITHYENSDDRLPRKSRLLEIADFFNVSVDFLLS 64 Query: 76 VSPTVCSDISSEENNVM-DFISTPDGLQ 102 + EE ++ D T + L Sbjct: 65 DAKEEIQLSKKEERDIARDLERTLEQLD 92 >gi|255283629|ref|ZP_05348184.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265891|gb|EET59096.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 204 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI+ R G++Q +LG LG +V +YE G L I+ +L Sbjct: 16 MMLGERIKRIRTFRGLTQRELGLKLGYEERNADVRVAQYESGYRVPKKDTLMEIARILNV 75 Query: 69 PISFFFDVSPTVCSDI 84 F P DI Sbjct: 76 NYINFITEVPGCAEDI 91 >gi|254452205|ref|ZP_05065642.1| DNA-binding protein [Octadecabacter antarcticus 238] gi|198266611|gb|EDY90881.1| DNA-binding protein [Octadecabacter antarcticus 238] Length = 215 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 9/95 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ L G++ + K E G+ + LQ ++ L P+ Sbjct: 25 LEVAIGREVRAFRRKQEITVADLSATTGLSIGMLSKIENGITSPSLTTLQTLAHALAVPL 84 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + FF + ++ +G++L R Sbjct: 85 TSFFRGFEEKRMAVHTKAG---------EGVELER 110 >gi|163939188|ref|YP_001644072.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010668|ref|ZP_04167868.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] gi|229132174|ref|ZP_04261032.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|163861385|gb|ABY42444.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228651321|gb|EEL07298.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|228750633|gb|EEM00459.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE-ENNVMDFIST 97 T + SE V D +S+ Sbjct: 62 LHDETTTEGHLDSEWTQLVKDAMSS 86 >gi|331091384|ref|ZP_08340223.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404248|gb|EGG83795.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] Length = 63 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR RR LG+SQ +L + G++ Q V E + ++++ L++ + F Sbjct: 5 IRNRRKELGLSQVELAKKCGVSRQTVNAIENNKYDPTLTLAFNLAKELKTTVDELF 60 >gi|301169786|emb|CBW29387.1| unnamed protein product [Haemophilus influenzae 10810] Length = 111 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 16/116 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG I R G+SQ K+ E LG++ + + E+G + RL + + + + Sbjct: 7 INKQVGASIAKYRKASGLSQAKVAEILGLSNDAISRMERGRIALNVERLCEFATLFQCRV 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S S SD QL+R Q+ D R+K+I L+ + Sbjct: 67 SDLITDSSLQPSD---------------QIYQLDRLLNQL-DHTERKKLILLIEQM 106 >gi|300814822|ref|ZP_07095058.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511068|gb|EFK38332.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 367 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R G++QE+L E + +T V K+E G + L ++ + Sbjct: 4 IGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSYPDILLLPKLATFFNISVDELI 63 Query: 75 DVSPTVCS 82 P + S Sbjct: 64 GYDPDLSS 71 >gi|221200648|ref|ZP_03573689.1| DNA-binding protein [Burkholderia multivorans CGD2M] gi|221208477|ref|ZP_03581479.1| DNA-binding protein [Burkholderia multivorans CGD2] gi|221210397|ref|ZP_03583377.1| DNA-binding protein [Burkholderia multivorans CGD1] gi|221169353|gb|EEE01820.1| DNA-binding protein [Burkholderia multivorans CGD1] gi|221171665|gb|EEE04110.1| DNA-binding protein [Burkholderia multivorans CGD2] gi|221179220|gb|EEE11626.1| DNA-binding protein [Burkholderia multivorans CGD2M] Length = 201 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 10/115 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L + ++ GI+ + + E+G+ + L I++ L + +F Sbjct: 25 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 84 Query: 75 DVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 D S E+ F + +G QL +++ + R ++ Sbjct: 85 DTPSEERSVCRGEQLRFFGFADSANLFARLTNLSEGRQLEAILVRMPPGQKRSEV 139 >gi|167465058|ref|ZP_02330147.1| SOS-response transcriptional repressor [Paenibacillus larvae subsp. larvae BRL-230010] Length = 211 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I+ R GM+Q L + LG+ V +EK A ++ +S+ + P S FF+V Sbjct: 12 ANIKRLRKSRGMTQGDLAKILGVGISTVSDWEKAKKYPRAGVIEKLSQYFDMPKSSFFEV 71 Query: 77 SPTVCSDISSEE 88 E+ Sbjct: 72 QGNAIEVYIEED 83 >gi|167465026|ref|ZP_02330115.1| Transcriptional regulator, MerR family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 181 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R G+S +L + IT + + E+G+ L+ +++ L+ P Sbjct: 3 NIDIGKKVEKYRKAKGLSSRELAKLAEITPSMLSQIERGLANPSIQTLKVLAKTLDVPTF 62 Query: 72 FF 73 F Sbjct: 63 SF 64 >gi|67078040|ref|YP_245660.1| transcriptional regulator [Bacillus cereus E33L] gi|66970346|gb|AAY60322.1| transcriptional regulator [Bacillus cereus E33L] Length = 145 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G +++ R SQE + +G+T Q V K+E + L +SE+ E I Sbjct: 3 NMNLGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTID 62 Query: 72 FFFDVSPTVCSDIS 85 S ++ Sbjct: 63 ELIKGSEDAREELD 76 >gi|15903845|ref|NP_359395.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae R6] gi|116516188|ref|YP_817208.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|15459488|gb|AAL00606.1| Transcriptional activator [Streptococcus pneumoniae R6] gi|116076764|gb|ABJ54484.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] Length = 299 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ G+T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|313889505|ref|ZP_07823151.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122117|gb|EFR45210.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 135 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 44/92 (47%), Gaps = 8/92 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 K+++ R+ SQ+ L + L I+ Q + K+E G + L ++E+ + + Sbjct: 6 KQLKKYRLEKNYSQDTLADQLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQLVRG 65 Query: 75 -DVSPTVCSDISSEENNVM-----DFISTPDG 100 + + ++ ++ S E +N+ +++ P+ Sbjct: 66 KESTSSLDNENSLENDNLNLLEGREYVINPET 97 >gi|229088569|ref|ZP_04220228.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-44] gi|228694744|gb|EEL48061.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-44] Length = 67 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFDV 76 R G+SQEKL E LG++ Q + EKG I++ ++ I F ++ Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFKTTIESVFLYEG 64 >gi|209963569|ref|YP_002296484.1| DNA-binding protein (HTH domain), putative [Rhodospirillum centenum SW] gi|209957035|gb|ACI97671.1| DNA-binding protein (HTH domain), putative [Rhodospirillum centenum SW] Length = 203 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P V + R+R R GMS L +G++ ++ K E GV + + ++ Sbjct: 1 MPPDVPVRDSSRLRSLRTARGMSLSALAAKVGLSKGELSKLETGVRPLRPDHVAKLARAF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 E S + + + I+ E + + DG L R Sbjct: 61 EIAPSDLVGEASALRAMIAPEPATLPLY----DGRDLAR 95 >gi|167747793|ref|ZP_02419920.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] gi|167653155|gb|EDR97284.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] Length = 352 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 10/106 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR R+ G++QE++ LG++ V K+EK V+ + L ++ +LE+ ++ Sbjct: 1 MKINEMIRELRIKKGLTQEQMASLLGVSAPAVNKWEKAVSYPDITLLPALARLLETDLNT 60 Query: 73 F--FDVSPTVCSDISSEENNVMDFISTPD-------GLQLNRYFIQ 109 F PT +I+ N + +S+ G++ R + Sbjct: 61 LLSFKEEPT-KEEITDFLNELAADVSSNGAEHAFHMGMEKVREYPS 105 >gi|149004413|ref|ZP_01829153.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] gi|147757662|gb|EDK64680.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] Length = 120 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 8/77 (10%), Positives = 36/77 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ+++ + + I+ + + ++E G +++ +++ +++ + + Sbjct: 2 NRLKELRQEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKVKQLADYFGVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMD 93 + S + + + Sbjct: 62 ESNPLERLESLVDELKE 78 >gi|223933356|ref|ZP_03625344.1| protein of unknown function DUF955 [Streptococcus suis 89/1591] gi|330833524|ref|YP_004402349.1| hypothetical protein SSUST3_1750 [Streptococcus suis ST3] gi|223898006|gb|EEF64379.1| protein of unknown function DUF955 [Streptococcus suis 89/1591] gi|329307747|gb|AEB82163.1| protein of unknown function DUF955 [Streptococcus suis ST3] Length = 385 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R R S +L E +G++ Q + KYEK +++ + LQ I L+ P+SF+ Sbjct: 7 GDRLRESRYFRHYSISQLAENVGVSKQMISKYEKNLSKPSSEVLQKIIFELKFPLSFY 64 >gi|303235344|ref|ZP_07321962.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302493658|gb|EFL53446.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 174 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE+L + + Q V K+E+G++ + L +SE+L + +S Sbjct: 4 ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVS 58 >gi|295110847|emb|CBL24800.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 255 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R GMSQ++L E + ++ Q V ++E G L+ +S+V + I+ Sbjct: 7 ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSIN 59 >gi|295107606|emb|CBL05149.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 83 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ I R +SQ++L I + + E G++ + ++L I++ L P Sbjct: 8 RQLGQHIVEMRKAQRISQKQLALMSDINKGYLSEIENGISNISVNKLFRIADALGVPPMD 67 Query: 73 FFDVSPTVCSD 83 F Sbjct: 68 LFAGIEGEEEG 78 >gi|317132632|ref|YP_004091946.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470611|gb|ADU27215.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 74 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R G+SQ +L + + I+ + + E V + I++ L + F Sbjct: 12 LGLNIAYYRKERGLSQMQLADAIDISRTHMSRIENNDCAVSLDVIFSIADALNIAVEKLF 71 Query: 75 D 75 + Sbjct: 72 E 72 >gi|270290740|ref|ZP_06196964.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4] gi|270280800|gb|EFA26634.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4] Length = 108 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R + +Q L L ++ V YE+G++ L I +L++ + +S Sbjct: 16 RLKSARKLKHFTQLDLANRLDVSKGTVSAYEQGLSYPSLETLVKICNILDTSADYLLGIS 75 Query: 78 PTVC---SDISSEENN-VMDFIS----TPDGLQ 102 + ++ E+ ++ FIS + LQ Sbjct: 76 DDLTFKMGGLTDEQTESILQFISLIEKANETLQ 108 >gi|270261929|ref|ZP_06190201.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] gi|270043805|gb|EFA16897.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] Length = 189 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R LG+S +L GI + + E G L ++ L+ P+S Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGSGNPSLETLWSLAMALDVPVS 71 >gi|271968400|ref|YP_003342596.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270511575|gb|ACZ89853.1| transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 78 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D++ RI + R G+S++ L LG+ +Q + E+G I+E E P+ Sbjct: 5 DVH--NRISVLRAERGVSRKDLAAALGVHYQTIGYLERGQYSPSLFLALRIAEYFEVPVE 62 Query: 72 FFFDVSP 78 F + P Sbjct: 63 IVFSLRP 69 >gi|153853942|ref|ZP_01995275.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814] gi|149753324|gb|EDM63255.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814] Length = 147 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ +GK+++ RM G +QE + E + ++ Q + +E + + +S + + Sbjct: 12 DMEIGKKLKDARMKSGFTQETVAERINVSRQTISNWENEKSYPDIISVIELSSLYSISLD 71 Query: 72 FFFDVSPTVCSDISSEENNV 91 + + N V Sbjct: 72 DLLKGDERMMEHLEESTNVV 91 >gi|78044374|ref|YP_359408.1| AraC family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996489|gb|ABB15388.1| transcriptional regulator, AraC family [Carboxydothermus hydrogenoformans Z-2901] Length = 257 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 47/102 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R +G++Q +L G++ + + E+G + ++ ++EVL + +F Sbjct: 139 LGYKLKKLREDMGLTQAELASQAGVSPGLIGQIEQGKVQPSLKTIEKLAEVLGTTPCYFI 198 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + ++ + + + P+ L +++ +++ Sbjct: 199 LEQTSPEQMLNLMSPELRELLLNPNVQSLLSSICTLNEKELQ 240 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + +G+RIRL R ++ +L +GI+ + + E+ + L+ I+E L + Sbjct: 70 VSLTLGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVNPSVATLRRIAEELGVSV 129 Query: 71 SFFF 74 + Sbjct: 130 ADLM 133 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G +IR R G++ +L + G++ + + E+G + + I++ L Sbjct: 5 GNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNV 57 >gi|313207090|ref|YP_004046267.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312446406|gb|ADQ82761.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315022512|gb|EFT35539.1| putative prophage LambdaCh01, repressor protein [Riemerella anatipestifer RA-YM] gi|325335473|gb|ADZ11747.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 198 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G I+ R I G+SQ+ + L +T + YE G L I++ L+ Sbjct: 3 YFGTNIKKIRQIKGLSQQAFADMLNLTRGIISSYEDGRAEPKVETLLRIAQFLDMKADDL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 P + +++ E V D I + Sbjct: 63 I-SKPLTVNQLANFE-EVEDLIYKKE 86 >gi|293400331|ref|ZP_06644477.1| helix-turn-helix protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306731|gb|EFE47974.1| helix-turn-helix protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 353 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +G +IR R+ ++QE+L + ++ + K+E ++ + L ++ + Sbjct: 5 LGNKIRELRLHKQLTQEQLAQLCKVSSAAISKWEHDLSYPDITLLPILARIFHVSTDELL 64 Query: 74 -FDVSPTVCSDISSEENNVMDFISTP 98 F+ P+ + + + + S P Sbjct: 65 NFESEPSEEEIVEMAKKALEMYQSVP 90 >gi|268610105|ref|ZP_06143832.1| putative regulatory protein [Ruminococcus flavefaciens FD-1] gi|325679993|ref|ZP_08159562.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108431|gb|EGC02678.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 126 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI+ R M Q L E I+ + E G + I+ L++ + Sbjct: 6 KLIGKRIKEVRTARKMPQMLLAEKCDISDSYLSYIECGRKTPSLEVIIRIARELDTTVDS 65 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + + +D + E + + ++ Sbjct: 66 LLEGN--QNTDTGTYEKEISEMMND 88 >gi|300773794|ref|ZP_07083663.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759965|gb|EFK56792.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] Length = 110 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 11/113 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IRL R G SQE + + L I+ K E G+ V SRL IS++ + Sbjct: 4 LGKKIRLLRHQKGWSQEDVAKRLDISIPAFSKIETGITDVNLSRLNQISKLFSLSVVQLL 63 Query: 75 DVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S + ++E ++ + + + +++++K+I+L + Sbjct: 64 STSDSEEDKQYANELADMSKKLQVRET----------EVIELQKKVIDLYEQL 106 >gi|255530826|ref|YP_003091198.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343810|gb|ACU03136.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 106 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+ +++R R G +Q + L I+ K E + SRL+ ++ +L+ + + Sbjct: 7 NISQKLRALRKNRGWTQSDMAAQLDISVPAYSKIECAQTELTLSRLKLLATILKVKVCWL 66 Query: 74 FDVSPTVCSDISSE 87 D V + E Sbjct: 67 LDEEEAVLHQENEE 80 >gi|227539648|ref|ZP_03969697.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240561|gb|EEI90576.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 110 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 11/113 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IRL R G SQE + + L I+ K E G+ V SRL IS++ + Sbjct: 4 LGKKIRLLRHQKGWSQEDVAKRLDISIPAFSKIETGITDVNLSRLNQISKLFSLSVVQLL 63 Query: 75 DVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S + ++E ++ + + + +++++K+I+L + Sbjct: 64 STSDSEEDKQYANELADMSKKLQVRET----------EVIELQKKVIDLYEQL 106 >gi|197303443|ref|ZP_03168482.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC 29176] gi|197297441|gb|EDY32002.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC 29176] Length = 368 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K++ R ++QE+L +G++ V K+E GV+ + L ++ I Sbjct: 4 INIAKQLLAARHEKKITQEELASYVGVSKAAVSKWESGVSFPDITLLPKLATYFNVSIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LIGYEPQLTRE 74 >gi|220928893|ref|YP_002505802.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999221|gb|ACL75822.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 182 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI V RI+ R++ G ++E++ + LGI Q + YE + + S L ++E+ + I+ Sbjct: 7 DIAV--RIKGLRLLAGYTEEEVADQLGIKLDQYKLYENAEDDIPVSLLYELAEIYKVNIT 64 Query: 72 FFFDVSPTVCSDI 84 + DI Sbjct: 65 EILTGTSPKLHDI 77 >gi|222053937|ref|YP_002536299.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563226|gb|ACM19198.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 187 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 29/70 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D N+G +I+ R+ ++ + + + G + + + E + L I++ + + Sbjct: 3 DYNIGAKIKKLRLAKKLTLQAVAKETGFSPALISQIENNNVSPPIATLSKIAKFFDVKVG 62 Query: 72 FFFDVSPTVC 81 FF C Sbjct: 63 MFFAEDEEEC 72 >gi|73668235|ref|YP_304250.1| XRE family transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72395397|gb|AAZ69670.1| transcriptional regulator, XRE family [Methanosarcina barkeri str. Fusaro] Length = 74 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 I++ R + ++QE L E +G+T Q + EKG ++ + + I F + Sbjct: 3 NNIKVYRAMHDLTQENLAEKVGVTRQTIHAIEKGKYDPSLELAFKLARLFDVRIEDIFLY 62 Query: 75 DVSPTVCSD 83 + S+ Sbjct: 63 EDRKARNSE 71 >gi|320093956|ref|ZP_08025785.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979114|gb|EFW10628.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 80 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ L E +G+T Q + E G + I L + F Sbjct: 22 RMKAARAGRGLSQASLAEQVGVTRQTISAVESGDYNPTIALCVRICRALGVTLDDLF 78 >gi|313113972|ref|ZP_07799527.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623674|gb|EFQ07074.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 136 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 7/131 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LG++Q G +GI + K+E GVN + + + + ++ + + Sbjct: 4 RLKLLRKTLGLNQVDFGTRIGIGGTAISKFESGVNAISDTLVLLVCREFNVNEAWLRNGT 63 Query: 78 PT----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 +D+ +E + + + QL ++Q+ D R + V + ++ +K Sbjct: 64 GEMFTHTSNDLVAELSETYHLGTYGE--QLLATYLQLSDADKR-AVERFVSQLTANVQKA 120 Query: 134 RTIEEECMVEQ 144 + + ++ Sbjct: 121 EDAQSDACEKE 131 >gi|291525635|emb|CBK91222.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 115 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RI RR +G+SQ++L GI Q + E G + L ++ VL + Sbjct: 11 DYERGLRIADRRKEMGLSQDELAHRAGIGRQALSAIENGGD-FKTQTLDSLAIVLGVSVD 69 Query: 72 FFFDVSPTVCSDISSEENNVM 92 F S++ SE +V+ Sbjct: 70 FIMYGEKEEKSELLSEAMDVL 90 >gi|289644282|ref|ZP_06476368.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505894|gb|EFD26907.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 488 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 11/118 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLES---PI 70 VG +R R G++Q++L E LG V K E G + S L+HI+ L + Sbjct: 20 VGLLLRSYRQTFGLTQQQLAERLGFDQSYVSKVESGRRAIHDISTLRHIARRLSLSPEDV 79 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 D + ++ +L R ++ R I L R+ Sbjct: 80 GLAAGSLIESRRDADPADPLDERIAASQRTWRLTRDYL----NHHR---ISLARAAAG 130 >gi|284006683|emb|CBA71944.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 220 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R + +Q LG+ +G+T V +EK +N G L ++ L + ++ Sbjct: 6 KTLGQRLKYLRKLKKYTQVTLGKAIGVTGVTVGYWEKDLNEPGGKALSKLARALNTTENY 65 Query: 73 F 73 Sbjct: 66 L 66 >gi|281334739|gb|ADA61823.1| hypothetical protein SAP047A_004 [Staphylococcus aureus] Length = 113 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ +R + G SQE+L L ++ Q V K+E N L +S++ + Sbjct: 7 IKEQRELKGWSQEELANILKVSRQNVSKWESAKNYPSLDILIAMSDLFGISLEHLIKGD 65 >gi|289192276|ref|YP_003458217.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] gi|288938726|gb|ADC69481.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] Length = 317 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 9/90 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP----IS 71 GK ++ R +G+S KL E G++ + + KYE + I E L+ P I Sbjct: 127 GKVLKEVREAMGISVGKLAEVAGVSRKAIYKYETQMANPSVDVAIKIEEFLDVPLVKGID 186 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL 101 F P ++ ++ N+ DF + + Sbjct: 187 LF---EPIDDEEVENKLENLEDF--KKEAI 211 >gi|257880858|ref|ZP_05660511.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260562694|ref|ZP_05833195.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|261209352|ref|ZP_05923730.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|257815086|gb|EEV43844.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260072923|gb|EEW61277.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|260076680|gb|EEW64429.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] Length = 153 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G ++R R+ G +QE + +T Q + K+E L+ I E + I+ Sbjct: 4 LGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNIN 60 >gi|255016915|ref|ZP_05289041.1| DNA-binding protein [Listeria monocytogenes FSL F2-515] Length = 106 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 18/101 (17%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R ++Q++L +G T + KYE +R L ++E+L + F D + Sbjct: 1 LRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLLDDVAGLR 60 Query: 82 SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S F I + ++ + +EL Sbjct: 61 EKNS------------------VNAFPLIGNPELEKWYLEL 83 >gi|150005248|ref|YP_001299992.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254883715|ref|ZP_05256425.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294777357|ref|ZP_06742809.1| DNA-binding protein [Bacteroides vulgatus PC510] gi|319643440|ref|ZP_07998063.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|149933672|gb|ABR40370.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254836508|gb|EET16817.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294448825|gb|EFG17373.1| DNA-binding protein [Bacteroides vulgatus PC510] gi|317384845|gb|EFV65801.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 191 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S +L G+ +Q+++ E V+ + L I+ L + F Sbjct: 7 VGEKIKSLRETKEISVAELAVRSGLAEEQIERIENNVDLPSLAPLIKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D + I ++ + + + + L Sbjct: 67 DDQEEQGAVICRKQESEDTISFSNNAMDL 95 >gi|114800095|ref|YP_759955.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740269|gb|ABI78394.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 479 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 11/98 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+ +G R+R R LG++Q ++ E LG++ + E + A+ L Sbjct: 1 MAERKEKT-----LIGPRVRRLRRTLGITQAQMAEDLGVSASYINLIEANQRPISANLLL 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 ++ V + FD+S + + + +M+ + P Sbjct: 56 TLARVYD------FDISDVGGAGDARLVSELMEVVRDP 87 >gi|69248820|ref|ZP_00604806.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257894941|ref|ZP_05674594.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|294623392|ref|ZP_06702249.1| transcriptional regulator [Enterococcus faecium U0317] gi|68194345|gb|EAN08856.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257831320|gb|EEV57927.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|281336179|gb|ADA62728.1| hypothetical membrane protein [Enterococcus faecium] gi|291597192|gb|EFF28386.1| transcriptional regulator [Enterococcus faecium U0317] Length = 153 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G ++R R+ G +QE + +T Q + K+E L+ I E + I+ Sbjct: 4 LGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNIN 60 >gi|310828836|ref|YP_003961193.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612] gi|308740570|gb|ADO38230.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612] Length = 66 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R L M+Q+ L E +G+T Q + EKG I VL + F Sbjct: 6 RIKAARAALDMTQKDLAEAVGVTRQTMNAIEKGDYNPTIKLCVAICRVLGKTLDELF 62 >gi|291556800|emb|CBL33917.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 131 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFF 73 +++ R G++Q++ + LG++ + + YEKG + + ++E+L I++ Sbjct: 6 KVKKERRAKGLTQQQFADMLGVSLRTITNYEKGESYPKQREIYGKMAEILGVDINYL 62 >gi|293402548|ref|ZP_06646683.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304062|gb|EFE45316.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 100 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV--SPTV 80 R L M+Q ++ E LGIT + V K+E G + AS + + E L I+ + Sbjct: 14 RKELNMTQRQIAERLGITNRAVSKWETGKSMPDASLMLELCEALHISINELLCGKRLNEL 73 Query: 81 CSDISSEENNVMDFISTPDGLQLNR 105 SE+N + F++ + L+ R Sbjct: 74 EERKESEQNTLAMFMAKNE-LENLR 97 >gi|228992527|ref|ZP_04152454.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] gi|229006074|ref|ZP_04163762.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228755150|gb|EEM04507.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228767161|gb|EEM15797.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] Length = 123 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 6/101 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R ++ ++LG+ L + + YE G + L ++ E + Sbjct: 2 IGENLRKLRKTNNLTMKELGQKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 T ++ + + ++ P L +F I D Sbjct: 62 GRDITKN---TTRDTYTYNPLTDP---DLGLWFKDIKDASP 96 >gi|226325896|ref|ZP_03801414.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|225206020|gb|EEG88374.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|291546627|emb|CBL19735.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 129 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GKRIR R G+S E+L E ++ + E + L IS LE I Sbjct: 8 IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITID 64 >gi|225405607|ref|ZP_03760796.1| hypothetical protein CLOSTASPAR_04828 [Clostridium asparagiforme DSM 15981] gi|225042871|gb|EEG53117.1| hypothetical protein CLOSTASPAR_04828 [Clostridium asparagiforme DSM 15981] Length = 180 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VG++I+ R GM+Q++LG +G ++ +YE L I++VL+ Sbjct: 1 MTVGEKIKFIRNFRGMTQKELGVGIGFDEKGADNRIAQYETNYRVPKKDTLLQIAKVLDV 60 Query: 69 PISFFFDVSPTVCSDI 84 + F DI Sbjct: 61 NLLNFISEVSGSAEDI 76 >gi|159038045|ref|YP_001537298.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916880|gb|ABV98307.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 524 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 11/82 (13%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR---LQHISEVLES 68 D+ +G+R+ R G+SQE L +G T + ++K E NR R ++ I++ L+ Sbjct: 120 DMTIGQRVAFYRRRRGLSQEVLAGLVGKTQEWLRKVE--TNRADLDRLSVIRAIAKALDV 177 Query: 69 PISF------FFDVSPTVCSDI 84 P+ F+ S + Sbjct: 178 PLGDLIGAPSLFEWSDDSGRET 199 >gi|332535597|ref|ZP_08411365.1| hypothetical protein PH505_db00030 [Pseudoalteromonas haloplanktis ANT/505] gi|332034981|gb|EGI71502.1| hypothetical protein PH505_db00030 [Pseudoalteromonas haloplanktis ANT/505] Length = 95 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G I+L R G SQ +L + L + + + E G R+ I +L Sbjct: 16 PALKIIGLNIKLARTKSGFSQAELADKLNVEQSYISRVESGSVAASCERIYEIIHLLGCK 75 Query: 70 ISFFFDVSPTVCSDISSEEN 89 S F S V + + E Sbjct: 76 ASDIFPESKEVETQFNRAEQ 95 >gi|315925644|ref|ZP_07921854.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315621185|gb|EFV01156.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 235 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G IR+ R G++ + L + + + + KYE G + L ++E L + Sbjct: 8 IGHNIRIYRKKNGLTLDALSDLVFKSKSALSKYENGDISIDIETLYELAEALHIHV 63 >gi|294782189|ref|ZP_06747515.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium sp. 1_1_41FAA] gi|294480830|gb|EFG28605.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium sp. 1_1_41FAA] Length = 131 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR RR LGM+Q++L G + K E + S++ +E L+ S+ D Sbjct: 6 RIRNRRKELGMTQDELARLTGYNDRSSIAKIEAKKADLSQSKIIAFAEALKVTTSYLMDG 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 I EENN+ ++ + +L Sbjct: 66 D-GKEKIIKKEENNIFSQLTEDELAKL 91 >gi|253988431|ref|YP_003039787.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988437|ref|YP_003039793.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638957|emb|CAR67572.1| putative phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779881|emb|CAQ83042.1| putative phage regulator [Photorhabdus asymbiotica] gi|253779887|emb|CAQ83048.1| putative phage regulator [Photorhabdus asymbiotica] Length = 133 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 9 NPVDIN--------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 NP+D +R+RL R +SQ +L E LG+ + ++EKG + + Sbjct: 2 NPIDSLCAGLDMSAFAERLRLLREARNLSQVRLAELLGVDPRAYNRWEKGASAPHLETVI 61 Query: 61 HISEVLESPIS 71 I++VL+ I Sbjct: 62 KIADVLQVTID 72 >gi|167760715|ref|ZP_02432842.1| hypothetical protein CLOSCI_03100 [Clostridium scindens ATCC 35704] gi|167661602|gb|EDS05732.1| hypothetical protein CLOSCI_03100 [Clostridium scindens ATCC 35704] Length = 202 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG++I+ R +G++Q+KL E GI ++KYE + +L+ I+ L Sbjct: 1 MTVGEKIKYCRKQIGITQDKLAELTGIHPVSIRKYETNKMQPQPPQLEKIAAALGVS 57 >gi|154496299|ref|ZP_02034995.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] gi|150274382|gb|EDN01459.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] Length = 155 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I V +R++ R G++Q+++ + L + + YE G + L ++ + + + Sbjct: 51 IAVSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSEPSMETLVQLANLYGVSLDY 110 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + T + + EE V+D Sbjct: 111 LMCRTDTRI-EFNEEEYKVID 130 >gi|145221887|ref|YP_001132565.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315446377|ref|YP_004079256.1| XRE family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145214373|gb|ABP43777.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315264680|gb|ADU01422.1| transcriptional regulator, XRE family [Mycobacterium sp. Spyr1] Length = 222 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ +RL R G++ + +GI+ + K E S L +++ + P+ Sbjct: 35 IESAIGRNVRLLRQQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPV 94 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIS--TPDGLQ 102 + F + + + T +G + Sbjct: 95 TSLFRGADVERPAAFVKAGTGARIVREGTREGHE 128 >gi|148263053|ref|YP_001229759.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396553|gb|ABQ25186.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 181 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RMI ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQE 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|332978243|gb|EGK14973.1| aspartate aminotransferase [Psychrobacter sp. 1501(2011)] Length = 551 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 37/86 (43%), Gaps = 5/86 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+ R G++ E+L + ++ + +E+G+N + +S+L ++ +L Sbjct: 11 GERLSKLRKAKGLTAEQLATAMTNAGSKVSRGAISNWERGINGIVSSKLPALANILGCSE 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIS 96 + +S ++ + + Sbjct: 71 GYLLRGELIEPDSNNSSQSQALSLQA 96 >gi|330718468|ref|ZP_08313068.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 260 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 4/93 (4%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ G++Q++L E + ++ Q V +E G N L+ +S + F+ Sbjct: 7 IKRMRLEKGLTQQELAESIHVSRQTVSTWETGKNYPSLEVLRSLSLLFNVS----FEQII 62 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ V + + L + +I Sbjct: 63 FGEKPTMADNKEVNIATTIDTDILLKHKYKRIS 95 >gi|326802631|ref|YP_004320449.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651355|gb|AEA01538.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 69 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ+ L E +G+ Q V E +++ L++ ++ F Sbjct: 2 NRLKYYRTRSGLSQKALAEEIGVARQTVNMIENDRYNPSLELCIALAKALDTDLNALF 59 >gi|258507112|ref|YP_003169863.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257147039|emb|CAR86012.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259648482|dbj|BAI40644.1| hypothetical protein [Lactobacillus rhamnosus GG] Length = 106 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L S+E+L + + + QQV ++EKG++ +L IS+ LE + Sbjct: 3 IGEQIKDRREALAWSREELAQVVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 75 DVSPTVCSDISSEEN--NVMDFIS 96 P + I ++N D++ Sbjct: 63 KSDPKLQKTIQIDKNAKEASDYLR 86 >gi|182625421|ref|ZP_02953194.1| conserved domain protein [Clostridium perfringens D str. JGS1721] gi|177909418|gb|EDT71870.1| conserved domain protein [Clostridium perfringens D str. JGS1721] Length = 64 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 I+L+R+ +G++Q++L +GI+ + + EKG + + ++E L++ + F Sbjct: 2 NIKLKRISMGLTQKELAHKVGISHVTLSRIEKGAYENITLRTMLKLAEALDTTVQELF 59 >gi|168184227|ref|ZP_02618891.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672749|gb|EDT84710.1| transcriptional regulator [Clostridium botulinum Bf] Length = 136 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++QE+LG+ +G+T V YE + L I+E F Sbjct: 2 LGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFLL 61 Query: 75 DVSP 78 + Sbjct: 62 NTEE 65 >gi|118444002|ref|YP_878514.1| DNA-binding protein [Clostridium novyi NT] gi|118134458|gb|ABK61502.1| DNA-binding protein, putative [Clostridium novyi NT] Length = 184 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R MS + + + G++ + + E+G + S L I+ L+ S F Sbjct: 8 IGMNLKTIRTKRNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVSFSSFI 67 Query: 75 DVSPTV 80 D S Sbjct: 68 DESKET 73 >gi|14520844|ref|NP_126319.1| repressor protein, putative [Pyrococcus abyssi GE5] gi|5458060|emb|CAB49550.1| Helix-turn-helix repressor protein family [Pyrococcus abyssi GE5] Length = 73 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L LG+T Q + EKG I+ I F Sbjct: 3 NRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIF 60 >gi|329116759|ref|ZP_08245476.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907164|gb|EGE54078.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 113 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 8/108 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q K+ + L IT Q ++E G +L I++ + + Sbjct: 6 RLKELRQQKNLTQAKVADSLEITQQSYARWENGKVTPTPEKLSKIAKFYGVTTDYLLEGQ 65 Query: 78 PTVCSDISSEENNVMDFISTPDGL-QLNRYFIQ---IDDVKVRQKIIE 121 D N + F T DGL + + + I+ +K R+K+ + Sbjct: 66 K----DDIDLSNVEVLFRMTSDGLTEEEKAIFRDELIEFMKERKKLFD 109 >gi|325262607|ref|ZP_08129344.1| DNA-binding protein [Clostridium sp. D5] gi|324032439|gb|EGB93717.1| DNA-binding protein [Clostridium sp. D5] Length = 365 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R +G++QE+L LG++ V K+EKG++ + L ++ + P Sbjct: 7 IRCKRKEMGLTQEELARYLGVSAPAVNKWEKGLSYPDITLLPVLAAYFNLSVDDLIGYEP 66 Query: 79 TVCSD 83 + + Sbjct: 67 QMVKE 71 >gi|294787640|ref|ZP_06752884.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] gi|294483933|gb|EFG31616.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] Length = 135 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++IR R SQE+L LG++ K E+G R+ SRL ++E+ + I Sbjct: 5 EKIRKIREEKKWSQEELANKLGLSTNGYAKIERGETRLTLSRLFQLAEIFKLDI 58 >gi|262402969|ref|ZP_06079529.1| predicted transcriptional regulator [Vibrio sp. RC586] gi|262350468|gb|EEY99601.1| predicted transcriptional regulator [Vibrio sp. RC586] Length = 237 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R L ++Q+++ +G++ + +E+ S L + + L + Sbjct: 6 IGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPLWLQ 65 Query: 75 DVSPTVCSDISSEE 88 T S + E Sbjct: 66 TGKGTQDSTAGNAE 79 >gi|282600159|ref|ZP_05973201.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566606|gb|EFB72141.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N + GK +R R M+ ++L + + ++ QQ+ +YE G + +L + L+ Sbjct: 6 NSISFYTGKFLRKARKEKNMTGKQLAKLMHVSQQQISRYETGRTSLTLEQLSQLLFFLD 64 >gi|149924308|ref|ZP_01912679.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] gi|149814844|gb|EDM74411.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] Length = 494 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 9/135 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G ++R +R GM+Q +L LGI+ + E + A L ++ + F Sbjct: 15 NLGSKVRAKRRARGMTQAELARRLGISASYLNLIEHNQRPLRAELLLSLAREFGLGLDDF 74 Query: 74 FDVSPTVCS----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + S+ +++ + +L V + ++ L + Sbjct: 75 ASDDDHRLGAHLLEAFSDPLFEEHPLNSAEVRELAS-----TSPAVARAVLTLYEQYQRA 129 Query: 130 EKKYRTIEEECMVEQ 144 + E+ Q Sbjct: 130 RNSLAELAEDSYARQ 144 >gi|217980293|ref|YP_002364269.1| putative phage repressor [Shewanella baltica OS223] gi|217500930|gb|ACK48902.1| putative phage repressor [Shewanella baltica OS223] Length = 209 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 38/73 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R I G++Q ++ E +G++ V ++E G ++ +L + +LE ++ Sbjct: 1 MKLGDRLKNTRKIKGLTQLQIAEGVGVSKVAVSRWELGYSQPKGEKLNALCNLLEIDSNW 60 Query: 73 FFDVSPTVCSDIS 85 C +++ Sbjct: 61 LLTGLKDECKNVA 73 >gi|229528221|ref|ZP_04417612.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|261212926|ref|ZP_05927210.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297580070|ref|ZP_06941997.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] gi|229334583|gb|EEO00069.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|260837991|gb|EEX64668.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297535716|gb|EFH74550.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] Length = 237 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R L ++Q+++ +G++ + +E+ S L + + L + Sbjct: 6 IGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPLWLQ 65 Query: 75 DVSPTVCSDISSEE 88 T S + E Sbjct: 66 TGKGTQDSTAGNAE 79 >gi|323142483|ref|ZP_08077303.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413060|gb|EFY03959.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 141 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 7 IPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + +D +G RI+ R G++Q + G++ + E G ++G + H++ V Sbjct: 1 MKLDIDYKAIGLRIKAARARKGLTQGNIANLTGLSTPHISNIETGNTKLGLPTIIHLANV 60 Query: 66 LESPIS 71 L+ + Sbjct: 61 LDVSVD 66 >gi|312174394|emb|CBX82641.1| HTH-type transcriptional regulator dicA Repressor protein of division inhibition gene dicA [Erwinia amylovora ATCC BAA-2158] Length = 141 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+ R GM+Q ++ L ++ Q VQ +E G R+ S L ++++L + Sbjct: 29 LGKRMTGYRKACGMTQAQMALALDVSQQAVQSWEAGRRRIQISVLPAVAKLLSVSL 84 >gi|269838246|ref|YP_003320474.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787509|gb|ACZ39652.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 71 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ R G +Q +L +G+T + +E G N AS+L+ ++++ + Sbjct: 4 IKELREARGWTQLELAYRVGVTPATIYNWEAGRNEPKASQLRKLAQIFGVSMD 56 >gi|254463689|ref|ZP_05077100.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206684597|gb|EDZ45079.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 189 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++ + L + + + E+ ++ S L+ I+E L P+S F Sbjct: 11 LGADIRALRKARGLTLTDVAAVLNRSVGWLSQVERDMSEPSISDLRQIAEALGVPMSMLF 70 Query: 75 DVSPTVCSD 83 S + Sbjct: 71 AHSGAPAHE 79 >gi|119962787|ref|YP_946870.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119949646|gb|ABM08557.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 175 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R GM+ +L + G++ V + E+G+ + L ++ L+ P+ FF S Sbjct: 2 RKAKGMTLAQLSDVTGLSQAIVSQIERGMANPSFTTLAQLAHGLDIPVGRFFIGQDESKS 61 Query: 83 DI 84 + Sbjct: 62 PV 63 >gi|70725248|ref|YP_252162.1| hypothetical protein SH0247 [Staphylococcus haemolyticus JCSC1435] gi|68445972|dbj|BAE03556.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 112 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++IR R ++Q++L L T Q V K+E+G + +++ + Sbjct: 5 EQIRKHRKENNLTQDQLATELHTTRQTVSKWEQGTIEPNVQMIVQLAQRFDISTDELLTG 64 Query: 77 S-----PTVCSDISSEENNVMDFISTP 98 S E N DF+S Sbjct: 65 QTSHPYKREESQSYPEHLNFWDFLSQK 91 >gi|37526811|ref|NP_930155.1| hypothetical protein plu2921 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786243|emb|CAE15295.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 67 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ +R + M+Q L +G+T Q +Q E G+ + + I+ VL+ S+ Sbjct: 4 LSERLKRKRSEMNMTQSDLAGRVGMTQQSIQLIEAGITK-RPRFIFEIANVLKCDPSWLL 62 Query: 75 DVSP 78 +P Sbjct: 63 YGNP 66 >gi|332298423|ref|YP_004440345.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181526|gb|AEE17214.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 195 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R GM+Q++L + L ++ + V K+E G + L +S +L + + Sbjct: 7 GNLIARLRKERGMTQKQLADGLFVSDKAVSKWETGAGCPDVTLLSALSRILGVDTAALLN 66 Query: 76 VS 77 Sbjct: 67 GD 68 >gi|321157319|emb|CBW39301.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 116 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R ++Q + E LGI+ +E+G + L I++VL I + Sbjct: 1 MEFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDY 60 Query: 73 FFDVSPTVCSD 83 S + Sbjct: 61 LVGNSDEHLKE 71 >gi|302875300|ref|YP_003843933.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688151|ref|ZP_07630597.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578157|gb|ADL52169.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 119 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 9/95 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF- 74 +RI+ RR+ LG+S + + + GI+ Q+YE G + +G +L ++++L++ S+ Sbjct: 11 ERIKNRRIELGLSYQDMQDATGISKSTWQRYETGFIKNLGIDKLDIVAKILQTTPSYLMG 70 Query: 75 -DVSPTVCSDISSEENNVMDF------ISTPDGLQ 102 D D S F + + ++ Sbjct: 71 WDTDKKAEIDTSGIHTIAAHFEGEDFTEADKEDIE 105 >gi|42782413|ref|NP_979660.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42738338|gb|AAS42268.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 67 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I++ L+S I F F+ Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALQSTIDEVFIFE 65 Query: 76 VS 77 Sbjct: 66 DE 67 >gi|148265511|ref|YP_001232217.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399011|gb|ABQ27644.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 187 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D N+G +I+ R + ++ + + G + + + E + L I+ I Sbjct: 3 DYNIGAKIKELRRAIKLTLQDVANETGFSTALLSQIENNNISPPIATLDKIAHFFGVRIG 62 Query: 72 FFFDVSPTVCS 82 FF S C Sbjct: 63 HFFIESEEECP 73 >gi|254190407|ref|ZP_04896915.1| probable transcription regulator protein [Burkholderia pseudomallei Pasteur 52237] gi|157938083|gb|EDO93753.1| probable transcription regulator protein [Burkholderia pseudomallei Pasteur 52237] Length = 109 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 32/82 (39%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P P+ I +GKRI+ R + SQE L + + E+GV L +I Sbjct: 11 SRPAPISIALGKRIKQCRHAVDKSQETLAFEAHVDRTYISAIERGVANPSVETLANICHA 70 Query: 66 LESPISFFFDVSPTVCSDISSE 87 L +S F V + E Sbjct: 71 LNVTLSELFAPLDGVSLKPTGE 92 >gi|329668140|gb|AEB94088.1| hypothetical protein LJP_1772 [Lactobacillus johnsonii DPC 6026] Length = 161 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++I+ R ++QE++ + L +T Q + +E N + I+E + Sbjct: 5 EQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAETFGVSLD 59 >gi|315650286|ref|ZP_07903358.1| helix-turn-helix domain protein [Eubacterium saburreum DSM 3986] gi|315487397|gb|EFU77707.1| helix-turn-helix domain protein [Eubacterium saburreum DSM 3986] Length = 121 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+R R LG++ E GE +G+ V + EKG N + + I + Sbjct: 2 GERVRELRKALGLTLEAFGEKVGVGKSAVSRLEKGTNNLTEQMILAICREFNVNEEWL 59 >gi|303233322|ref|ZP_07319992.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] gi|302480567|gb|EFL43657.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] Length = 328 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 19/111 (17%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 +I R G SQE+L + LG++ Q V K+E + R+ +S + D Sbjct: 6 KILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDLLVKDE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + ++ ++E + + VR ++I+L + Sbjct: 66 IDVMEKNVDADEAACQE------------------EAGVRMRVIKLEEATA 98 >gi|291441034|ref|ZP_06580424.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291343929|gb|EFE70885.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 190 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 11/110 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R ++ L E GI+ + + E G+ R L I++ + P+ Sbjct: 10 VGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 69 Query: 75 DVSPTVCSDISSEENNVMD-----FISTPDGLQLNRYFIQIDDVKVRQKI 119 P + S+ P GLQ + ++ R+K+ Sbjct: 70 GAPPVGDPRVRSKPIERYGRTHWPLTRQPGGLQ---AYKVLEP---RRKL 113 >gi|317131914|ref|YP_004091228.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469893|gb|ADU26497.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 118 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R + +SQ K+ +G T + +YE GV+ + L ++ + + + Sbjct: 2 KEIGNRLRALREGVKLSQAKIANLVGTTQATINRYETGVSSPPLNVLIWYADHFDVSMDY 61 Query: 73 FF 74 F Sbjct: 62 IF 63 >gi|266623508|ref|ZP_06116443.1| putative transcriptional regulatory protein [Clostridium hathewayi DSM 13479] gi|288864705|gb|EFC97003.1| putative transcriptional regulatory protein [Clostridium hathewayi DSM 13479] Length = 345 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G+ IR R M+QE++G LG+T V K+E G + + L I+ +L Sbjct: 1 MQLGQVIRKYRKNKNMTQEEMGGRLGVTAPAVNKWENGASMPDITLLAPIARLLGI 56 >gi|254497228|ref|ZP_05110037.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254353552|gb|EET12278.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 84 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+ + I +G++IR R G SQE++ + G+ + + E+G + L I+ Sbjct: 2 KVKHQNLIKIGEKIRTLRTSEGYSQEEIADASGMGRTYMGRVERGEQNISIQNLIQIAFA 61 Query: 66 LESPISFFFDVSPTVCSDI 84 L + + + Sbjct: 62 LNVEVGVLVPALSELINPA 80 >gi|229082772|ref|ZP_04215209.1| hypothetical protein bcere0023_53730 [Bacillus cereus Rock4-2] gi|228700527|gb|EEL53076.1| hypothetical protein bcere0023_53730 [Bacillus cereus Rock4-2] Length = 144 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 6/89 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q+ L + + T + YE G + L+ ++ VL + Sbjct: 4 QRLKEMRKTRKLTQQGLADKVNTTKGTISNYENGHSTPSNEMLKDLANVLGVTTDYL--- 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + S +N + ++ D + R Sbjct: 61 ---LGREDESRMSNALPDLNKKDTRDIAR 86 >gi|225419976|ref|ZP_03762279.1| hypothetical protein CLOSTASPAR_06317 [Clostridium asparagiforme DSM 15981] gi|225041368|gb|EEG51614.1| hypothetical protein CLOSTASPAR_06317 [Clostridium asparagiforme DSM 15981] Length = 139 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--F 74 +++++ L +SQ KL + GI + +Y G N R + I+ L +F F Sbjct: 5 EKLKVLMGELDLSQSKLSDLTGIGKSSISQYLSGKNEPSKDRKKEIARKLGVQEDYFDTF 64 Query: 75 DVSPTVCSD 83 + + TV D Sbjct: 65 ETAATVQHD 73 >gi|218134626|ref|ZP_03463430.1| hypothetical protein BACPEC_02529 [Bacteroides pectinophilus ATCC 43243] gi|217990011|gb|EEC56022.1| hypothetical protein BACPEC_02529 [Bacteroides pectinophilus ATCC 43243] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+RI+ R M++++L E +G++ ++K E GVN L I+E+ + + Sbjct: 9 GERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHITLDYL 66 >gi|72161652|ref|YP_289309.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71915384|gb|AAZ55286.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 267 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G++IR R G+SQE+L + + ++ + E+G + ++ I L P Sbjct: 9 VKIGQKIREHRQHAGLSQEELAKLVALSPTMLSAMERGTRGIKRDHVERIDAALGIP 65 >gi|68536003|ref|YP_250708.1| hypothetical protein jk0926 [Corynebacterium jeikeium K411] gi|68263602|emb|CAI37090.1| hypothetical protein jk0926 [Corynebacterium jeikeium K411] Length = 294 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+R+R R+ G+SQ L E + + + ++E GV+ + ++ L +S Sbjct: 12 GRRLRHARLDRGLSQNALAEGI-CSASAISRWEAGVHLPPEDAIWSLANRLGIDVS 66 >gi|56963615|ref|YP_175346.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909858|dbj|BAD64385.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 106 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 9/98 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R++ R ++QE+LGE + +T + YE G L+ +++V + Sbjct: 4 VPERLKTLRKERQLTQEQLGELINVTKVSISGYENGNRTPDTDTLRRLADVFGVSTDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR---YFIQ 109 S + ++ + QL R FI+ Sbjct: 64 GRSKEKNGSF-----FYDNELTHKEA-QLLREHLAFIR 95 >gi|158311928|ref|YP_001504436.1| hypothetical protein Franean1_0062 [Frankia sp. EAN1pec] gi|158107333|gb|ABW09530.1| protein of unknown function DUF955 [Frankia sp. EAN1pec] Length = 394 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R + G+++ + LG++ V ++E G + + ++EVL+ P +F Sbjct: 33 ARLAQARRLAGLTKRAVAGQLGVSPVAVGQWEAGTHAPRPDHVGRLAEVLDVPPAFLAAG 92 Query: 77 SP 78 P Sbjct: 93 RP 94 >gi|322388685|ref|ZP_08062284.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140474|gb|EFX35980.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 113 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q +L + LGI +E+G + L I+++L+ I + Sbjct: 5 ERLKELRKQAHLTQVELAKRLGIGQSSYADWERGKKKPTQENLVKIAQILDVSIDYLVGN 64 Query: 77 SPTVCSDISSEE 88 S ++ + E Sbjct: 65 SEEKSDELDNIE 76 >gi|310640587|ref|YP_003945345.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309245537|gb|ADO55104.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 115 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 VG RIR R G+SQE L E G + E+ + L+ I++ L + Sbjct: 8 VGTRIRDIRKSKGLSQEALAEQAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQLL 67 Query: 74 -FDVSPTVCSDISSEENNVMDFISTPD 99 + ++ S ++ + T + Sbjct: 68 TYVKENDELTEEDSSIKAILSLLRTRE 94 >gi|290956627|ref|YP_003487809.1| regulator protein [Streptomyces scabiei 87.22] gi|260646153|emb|CBG69246.1| putative regulator protein [Streptomyces scabiei 87.22] Length = 410 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFF 73 +G+RI R G +Q L +G + + K E+GV + +L ++ VL P+S Sbjct: 10 IGQRIAFYRERRGYTQPVLAGLVGHSTDWLSKIERGVRKPPRIDKLAELARVLRVPLSDL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 P + D EE ++ D + D L Sbjct: 70 M-GQPVLLED---EEKHMDDVPAVRDALM 94 >gi|302530030|ref|ZP_07282372.1| predicted protein [Streptomyces sp. AA4] gi|302438925|gb|EFL10741.1| predicted protein [Streptomyces sp. AA4] Length = 180 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 VG RIR R G+ L G+ + + E G L I+ L P+S Sbjct: 16 VGTRIRTLRTRAGVGLTTLAADSGLGKGTLSELENGRRNPTLDTLFAIATALSIPLSDLL 75 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 F + S ++ P+G+ Sbjct: 76 FGDDGVAEAHGDSVTATLLGRWEDPEGV 103 >gi|290894052|ref|ZP_06557026.1| phage protein [Listeria monocytogenes FSL J2-071] gi|290556396|gb|EFD89936.1| phage protein [Listeria monocytogenes FSL J2-071] Length = 100 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 2/99 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R +QE L LGI+ E G N + ++ E + Sbjct: 3 GKKLKKLRNKTNKTQEDLANILGISRAAYSHIENGRNEPDMETIVKLANYFEVSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + SD+ + + D ++ + +++ +Y I K Sbjct: 63 RNEIGNSDLLAAH--IDDDLTEEERIEIEKYLKFIRSQK 99 >gi|239820586|ref|YP_002947771.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805439|gb|ACS22505.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 95 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Query: 19 IRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +RL R+ G+ Q+KLG G+ ++ +YE GV+ S +++ L P +F+ Sbjct: 1 MRLARLAAGLPQDKLGVKAGLDDGTASARISRYESGVHEPNISFAHRLADELGVPAPYFY 60 Query: 75 DVSPTVC 81 + Sbjct: 61 AADDELA 67 >gi|228990347|ref|ZP_04150313.1| Helix-turn-helix repressor protein [Bacillus pseudomycoides DSM 12442] gi|228769423|gb|EEM18020.1| Helix-turn-helix repressor protein [Bacillus pseudomycoides DSM 12442] Length = 64 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFDVSP 78 R LG+SQEKL E LG++ Q + EKG I++ ++ I F ++ Sbjct: 3 EYRKKLGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKAFQTTIENVFIYEGKE 62 Query: 79 TV 80 Sbjct: 63 RE 64 >gi|206974554|ref|ZP_03235470.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222096804|ref|YP_002530861.1| transcriptional regulator [Bacillus cereus Q1] gi|206747197|gb|EDZ58588.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221240862|gb|ACM13572.1| transcriptional regulator [Bacillus cereus Q1] Length = 67 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I+ L S I F F+ Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 76 V 76 Sbjct: 66 D 66 >gi|163795463|ref|ZP_02189430.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] gi|159179449|gb|EDP63980.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] Length = 481 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 18/114 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R+ G+SQ ++ +GI+ + E V L + E + F Sbjct: 12 LGHKIRRFRLDQGLSQTEMAAQIGISPSYLNLIEHNQRPVTVPLLFKLGNAFEIDLKEFA 71 Query: 75 DVSPTVCSDISSE-------------ENNVMDFISTP-----DGLQLNRYFIQI 110 + + SE E + + +++ L L R + +I Sbjct: 72 EDDDQRLAAGLSEVFGDPLFEGQAVSEREMRELVASAPAAAQGVLTLYRAYRRI 125 >gi|134098034|ref|YP_001103695.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291007202|ref|ZP_06565175.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910657|emb|CAM00770.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 488 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 4/142 (2%) Query: 3 GNKKIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ D+ V G+R+R R G++ +LGE +G Q+ E G S L+ Sbjct: 8 EDRNFSTDQDLLVFGQRLRHLRRAAGLTLVELGERVGRAPSQLSLLENGHREPKLSLLRS 67 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +++ L S + P E +D + L + ++ + + + Sbjct: 68 LADALGSSVDELMSKKPPNRRAELEIAVEQAQLDPLYQRLSLPPLKVGKRVPTEAL-EHV 126 Query: 120 IELVRSIVSSEKKYRTIEEECM 141 + L + E K EE Sbjct: 127 LALYDELKRRENKQVATPEEAR 148 >gi|167032884|ref|YP_001668115.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859372|gb|ABY97779.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 197 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R M+ ++L E G+ + K E V +L + L I+ F Sbjct: 13 VGQRLRQVRKARQMTLKQLSEASGVPVSTLSKMELAQVSVSYEKLAAAARALNVDIAQLF 72 Query: 75 DVSPTVCSDIS 85 S TV + + Sbjct: 73 RASGTVSAPVP 83 >gi|113461078|ref|YP_719146.1| hypothetical protein HS_0935 [Haemophilus somnus 129PT] gi|112823121|gb|ABI25210.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 143 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + IR R M+QE + E L ++ K+E+G +++ RL I+++LE P+ Sbjct: 9 ENIRTFRENKKMTQEMMAERLNVSKTCYAKWERGESQIRIERLVQIAQILEVPLEDLMSS 68 Query: 77 SPT 79 Sbjct: 69 MNE 71 >gi|288917740|ref|ZP_06412103.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288350955|gb|EFC85169.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 254 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 31/82 (37%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N ++ + +R R G++ +L G++ + K E + L + Sbjct: 56 ENASRQGRLERAIAGNVRRLRHDRGLTLAELAARSGVSSAMISKVENASISCSLTTLDRL 115 Query: 63 SEVLESPISFFFDVSPTVCSDI 84 +E L+ P++ F + + Sbjct: 116 AETLDVPVTSLFRGADAAREAV 137 >gi|240145805|ref|ZP_04744406.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257202094|gb|EEV00379.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 87 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + Sbjct: 8 KLIGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ + Sbjct: 68 WLKGETDEYETDITDKRE 85 >gi|23016781|ref|ZP_00056533.1| COG0703: Shikimate kinase [Magnetospirillum magnetotacticum MS-1] Length = 290 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G R++ R GMS++ L GI+ + + + E G V + L +++ +++ I Sbjct: 10 LSRRLGDRVKAFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTAI 69 Query: 71 SFFFDVSPTVCSDISSEENNVMDFI---STPDGLQLNR-YFIQIDDVKVRQKIIEL 122 + + +D + + L R F + +K R +I L Sbjct: 70 TDLIEAESETGHPDLPLAKKFLDQLNPDQQSEAYVLLRQNFKRGLKLKRRVALIGL 125 >gi|306835386|ref|ZP_07468407.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|304568752|gb|EFM44296.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 437 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 49/125 (39%), Gaps = 11/125 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G++Q + + LG++ + + E + + L +++ S+F + Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDPSYFAE 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELV-RSIVSSEKKY 133 I+ + D ++ + L L F ++ + +++ R+ + + Sbjct: 67 DRD--IHTITELRHIFPD--ASEETLSDLASRFPELMP-----RFVDVASRAPAADPSPF 117 Query: 134 RTIEE 138 + + Sbjct: 118 EVVRD 122 >gi|303246095|ref|ZP_07332376.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492491|gb|EFL52362.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+I+ R ++QEKL + G++ Q + + E+G + ++ +S+ L+ P++ F Sbjct: 9 GKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLSKALDIPMAELFS 68 Query: 76 VSP 78 + Sbjct: 69 LEE 71 >gi|253574793|ref|ZP_04852133.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845839|gb|EES73847.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 127 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R + ++Q+ L I+ Q+ +YE + L++I + L++ + Sbjct: 13 LGERIKYLRELRQLTQKDLASQAEISVVQLSRYETNDRKPDPEVLRNIVDALDTSADYL- 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 + T ++E+ + F P+ Sbjct: 72 -LGRTNDPSPAAEKGMSLSFFGGPEA 96 >gi|255279970|ref|ZP_05344525.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255269743|gb|EET62948.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 257 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 47/104 (45%), Gaps = 9/104 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + +R ++Q++L + L ++ + V K+E+G + + L ++E L ++ + Sbjct: 10 GRFVAQQRKKKKLTQKELAQKLYVSDKAVSKWERGSSMPDIALLTPLAEALGVTVTELLE 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQ 117 +EE+ + D L + + I + ++R+ Sbjct: 70 GKEMEK----TEESRMAD---DSHLEMLLKKAVTITEDTPEMRR 106 >gi|332140175|ref|YP_004425913.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550197|gb|AEA96915.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 187 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 38/93 (40%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P+ + ++ + ++ R G+S +K + G++ + + E+G + + L Sbjct: 1 MTKANAQPSAISKSIAQHLQSVRTGRGLSLDKTAKLTGVSKAMLGQIERGESSPTIATLW 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 I+ L S F T + +++ D Sbjct: 61 KIATGLACSFSSFLSGDETAPTSQHADDKFAND 93 >gi|56709057|ref|YP_165102.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680742|gb|AAV97407.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 188 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPI 70 D +G+R+R+ R G+SQ L + GI + E G S L+ VL PI Sbjct: 8 DAELGQRLRVIRERAGLSQRALAKRSGIPNSTISLIEGGKINPSVSTLR---RVLGGIPI 64 Query: 71 --SFFFDVSPTVCSDISSEENNVMDF 94 S FF P ++ + Sbjct: 65 GLSDFFAFEPEQEKASFYAAEDLTEI 90 >gi|84385211|ref|ZP_00988243.1| DNA-binding protein [Vibrio splendidus 12B01] gi|84379808|gb|EAP96659.1| DNA-binding protein [Vibrio splendidus 12B01] Length = 188 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 8/92 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG ++ R G S +K + G++ + + E+G + ++L I+ E +S Sbjct: 5 IKVGVNLKRLRQEKGWSLDKTAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVSLSS 64 Query: 73 FFDVSPTV--------CSDISSEENNVMDFIS 96 F S +++ EE N+ F+S Sbjct: 65 FIAASSNSELTSLFRDANELRHEEYNIGFFVS 96 >gi|319646699|ref|ZP_08000928.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2] gi|317391287|gb|EFV72085.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2] Length = 183 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ V + I+ R + S ++L G++ + + EKG + + L I+ L+ Sbjct: 2 NSIEKQVAENIKRLRKVRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVM 92 + + + + E + Sbjct: 62 SFTSLAEKPAGEPTVVRKHEKTPV 85 >gi|313904693|ref|ZP_07838067.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470486|gb|EFR65814.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 106 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I RR + ++QE+L + +G++ + K+E L+ ISEV++ + Sbjct: 7 LGQFISTRRKHMRLTQEELADQVGVSKSAIAKWETDGGLPDRDNLRRISEVMDVSVD--- 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + I E N DF L++ + Sbjct: 64 ----ELHRIIEQPETNHKDFFDVNITLEVIKA 91 >gi|312884735|ref|ZP_07744436.1| hypothetical protein VIBC2010_19520 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367648|gb|EFP95199.1| hypothetical protein VIBC2010_19520 [Vibrio caribbenthicus ATCC BAA-2122] Length = 222 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 7/94 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV-----LESPI 70 G+RIR R + G+++++L + G+ +Q +E N++ A + ++EV L+ Sbjct: 17 GERIRSARNLSGLTRQQLLDKYGLNTNTLQSWELERNKLSAKGAKKLAEVFESEGLKVSQ 76 Query: 71 SF--FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + F + P S E IS + +Q Sbjct: 77 EWLLFGEGLPPQTKFFDSGEEFFQTSISEDEAIQ 110 >gi|317152201|ref|YP_004120249.1| helix-turn-helix domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942452|gb|ADU61503.1| helix-turn-helix domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 108 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + +GKRIR R +SQ +L E G+ + + + E+G N + L I+ L Sbjct: 2 DDILLKLGKRIRELRKKKELSQSRLAEMAGLNDKYLGEVERGSNNISVKNLGQIAAALGV 61 Query: 69 PISFFFDVSPTVCSD 83 D + D Sbjct: 62 ETYELLDGAHEYEID 76 >gi|238801890|ref|YP_002925093.1| DNA binding protein [Streptococcus phage 5093] gi|238558576|gb|ACR45906.1| DNA binding protein [Streptococcus phage 5093] Length = 170 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 R++ R + M++ +L E +G+T + +E G + + S + +++ I + Sbjct: 2 NRLKELRELRKMTRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLADHFGVSIPYLLGY 61 Query: 76 VSPTVCSDISSEENNVMD 93 + SD+ ++ N D Sbjct: 62 DTDNTFSDLVAKINEWAD 79 >gi|160947469|ref|ZP_02094636.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270] gi|158446603|gb|EDP23598.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270] Length = 200 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + V +R++ R I +Q++ E LGI + YE G N L I++ + + Sbjct: 3 NKTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCKVSLD 62 Query: 72 FF 73 + Sbjct: 63 WL 64 >gi|86739571|ref|YP_479971.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566433|gb|ABD10242.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 497 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEV 65 P + VG+ +R R G++Q++L + LG V K E G + S L+HI+ Sbjct: 12 RSTPTSVGVGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVESGRRAIHDISTLRHIARN 71 Query: 66 L 66 L Sbjct: 72 L 72 >gi|297537332|ref|YP_003673101.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297256679|gb|ADI28524.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 223 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 13/100 (13%) Query: 1 MVGNKKIP--NPVDIN---VGKRIRLRRMILGMSQEKLGEC--------LGITFQQVQKY 47 M +KK N VD+ +GKRI R LG+SQE L + +GI+ + Y Sbjct: 1 MSDDKKQSEKNKVDVLARDIGKRIFDARDGLGLSQESLYKRTKLNDHDGIGISRAVLSLY 60 Query: 48 EKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 E+G+N+ GA + + L+ ++ S + + Sbjct: 61 ERGINKPGAREISILCVTLKISPNWLLFGSESPAEALLPS 100 >gi|295099455|emb|CBK88544.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 124 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R G++Q++L + ++ + VQ E+GV L+ +VL + Sbjct: 5 KELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDS 64 Query: 73 FFDVSPTVCSDISSE 87 ++ +++ Sbjct: 65 LMNLDLPEDEQAAND 79 >gi|227508343|ref|ZP_03938392.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192161|gb|EEI72228.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 209 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R G++Q L E L I+ + V +E G + S + +S+V + Sbjct: 6 NKIKQYRTTKGLTQAGLAEKLSISRKTVSSWENGRSFPNFSTIIQLSKVFGIKVDDLLKN 65 Query: 77 SPTVCSDISSEENNV 91 V + ++ V Sbjct: 66 DNKVIEHFNKQDKQV 80 >gi|225855406|ref|YP_002736918.1| cI repressor [Streptococcus pneumoniae JJA] gi|225724232|gb|ACO20085.1| cI repressor [Streptococcus pneumoniae JJA] Length = 250 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R ++Q+KL E G + +E G ++ ++ ++ LE + F Sbjct: 4 LGSSIKEVRKSKKLTQKKLAELTGFKQNTISNHENGNRQLDEKDIRIYAQALEVSPQYLF 63 Query: 75 DVSPTVCSDI 84 D++ +I Sbjct: 64 DLAKPSSIEI 73 >gi|206972608|ref|ZP_03233551.1| DNA-binding protein [Bacillus cereus AH1134] gi|206732510|gb|EDZ49689.1| DNA-binding protein [Bacillus cereus AH1134] Length = 67 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 61 >gi|126011121|ref|YP_001039946.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396] gi|124389390|gb|ABN10832.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396] Length = 86 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG++IR +R + ++Q +L E L Q + E G R L + ++ + F Sbjct: 23 FVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQDLVKLRKIFNVSVDDF 82 >gi|37525095|ref|NP_928439.1| hypothetical protein plu1127 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525319|ref|NP_928663.1| hypothetical protein plu1363 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527554|ref|NP_930898.1| hypothetical protein plu3690 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527562|ref|NP_930906.1| hypothetical protein plu3698 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784521|emb|CAE13421.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784746|emb|CAE13656.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786989|emb|CAE16063.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786997|emb|CAE16071.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 112 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFDV 76 ++ R LG +Q+++ + +G+ Q ++YE G ++ + I+ L FD Sbjct: 6 KLAASRKELGFTQQQMADKIGMHVSQYKRYEAGTSQPTIDVFRRIALALNVSADMLLFDP 65 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + D + + + + Sbjct: 66 NERGPDDRLKLQFEAVSQLDEKE 88 >gi|103487098|ref|YP_616659.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977175|gb|ABF53326.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 71 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R + SQ +L + L ++ Q V E G ++ + + PI FD Sbjct: 3 NQLKVLRAMRNWSQAELADRLDVSRQAVNAIETGKYDPSLPLAFKLARLFDMPIEEIFDD 62 Query: 77 SPTVCSDIS 85 D Sbjct: 63 GHKGQDDGE 71 >gi|331090621|ref|ZP_08339472.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401061|gb|EGG80656.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium 2_1_46FAA] Length = 160 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G++I+ R ++QE+ L ++ Q V +E N L +S+V + + + Sbjct: 1 MDFGEQIKSIRQKEKLTQEQFAMKLNVSRQAVSNWENNKNLPDIGMLILMSDVFQISLDY 60 Query: 73 FFDVSPTVCS 82 + + Sbjct: 61 LIKGENEMNN 70 >gi|325274702|ref|ZP_08140747.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324100169|gb|EGB97970.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 187 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 10/132 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V +R R GMSQ L E G++ + + E G V + L I+E L S Sbjct: 14 HVSLNVRSLRNAAGMSQAVLAERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTL 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-SIVSSEKK 132 E + + L + R+++ EL ++ E+ Sbjct: 74 IQAPDLRDPGRIEELAWAGEHPQSRAVL--------LGTSAARREV-ELWEWTLAPGERY 124 Query: 133 YRTIEEECMVEQ 144 + E EQ Sbjct: 125 ASEADAEGWSEQ 136 >gi|257784647|ref|YP_003179864.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473154|gb|ACV51273.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 142 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R SQE+L + +G++ Q + KYE G + + + + V I Sbjct: 5 ENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKRFANVFGVTIDDLISY 64 Query: 77 SPTVCSDIS 85 ++ Sbjct: 65 DKKNEDNLG 73 >gi|167760938|ref|ZP_02433065.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC 35704] gi|167661541|gb|EDS05671.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC 35704] Length = 112 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+RI+ R G++Q +L E L ++ + + E G + + I++ L Sbjct: 8 GQRIQEIRKAQGITQNQLAEKLHVSPSFISRIENGSSSLTVDFACEIADALHV 60 >gi|187927014|ref|YP_001893359.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] gi|241665343|ref|YP_002983702.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|187728768|gb|ACD29932.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] gi|240867370|gb|ACS65030.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 198 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 17 VGAKLQALRQARKLSLDELSRHAGVSKSMLSQVERNLANPTVAVLWRLATALGVSLADF- 75 Query: 75 DVSPTVCSDISSE 87 +SP +D + Sbjct: 76 -LSPESAADAAPA 87 >gi|114328257|ref|YP_745414.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] gi|114316431|gb|ABI62491.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] Length = 255 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES- 68 P+++ VG+R+R R+ G SQ+ L + G + + K E+ + + L +++ L Sbjct: 14 PIEMTVGERMRHARIQRGWSQDALAKEAGTSQTTIDKIERNLTQRS-RALPRLAQCLGVD 72 Query: 69 ----PISFFFDVSPTVCSDISSEEN 89 + D P ++ + Sbjct: 73 LLTLDPDYLGDYQPGTEAEAPPQSP 97 >gi|71736183|ref|YP_275333.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556736|gb|AAZ35947.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 189 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 35/135 (25%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V + +R R +SQ L E G++ + + E G V + L ++E LE S Sbjct: 14 HVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFS-- 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD------VKVRQKIIELVRSIV 127 D I P+ NR + +I++ + + ++ L R+I Sbjct: 72 -------------------DLIQAPE----NRDYSRINELAWAGTISGSKAVL-LARAIA 107 Query: 128 SSEKKYRTIEEECMV 142 E + E C+ Sbjct: 108 RRE---VELWEFCLE 119 >gi|332359913|gb|EGJ37727.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 120 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ ++Q + G++ +EKG + + I+E + Sbjct: 4 ERLKALRLEANLTQNDVSRQFGVSQPTYSNWEKGEKKPTPDKYPKIAEFYNVSTDYLLGK 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S SD + + + + L+ +I + +R+ ++E ++I + K+ + Sbjct: 64 SDYKNSD--EIDLSTFEVLYRKTSKNLSDEEKKILEEDLREFLLEREKAIKAMNKEKK 119 >gi|310827041|ref|YP_003959398.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] gi|308738775|gb|ADO36435.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] Length = 183 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 17/113 (15%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + K I+ R +S E+L G++ + + E+G S L +S + P Sbjct: 4 MNQIIAKNIKRLREERKLSMEELARLSGVSKSMLAQIERGEGNPTISTLWKLSNGMGVP- 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL------NRYFIQIDDVKVRQ 117 FD ++ N + + T + L + + D + R+ Sbjct: 63 ---FDA-------LTVRPKNPYEIVKTAELQPLLEDDGRVKNYALFPDDENRR 105 >gi|320105917|ref|YP_004181507.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924438|gb|ADV81513.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 116 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R+ GMSQ + + G+ + + E G L+ I+ L+ P+S Sbjct: 1 MNIGGTIRGFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLKKIASALDLPLSQ 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF + S S + + F++ Q+ RY + D R+ ++ +VR + Sbjct: 61 FFAEEGVVRDMSQQLSLSEDEIKFLT-----QVQRYSSNLSDGD-RKLLLAMVRKFAQT 113 >gi|222153931|ref|YP_002563108.1| DNA-binding phage protein [Streptococcus uberis 0140J] gi|222114744|emb|CAR43890.1| putative DNA-binding phage protein [Streptococcus uberis 0140J] Length = 233 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R ++Q++L + L I+ + + +EKG + + + +++ + + + Sbjct: 2 NRIKELREEKNLTQQELADILDISKRTLGYWEKGKQ-IKPDKAKQLADYFKVTVGYL 57 Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQK-YEKGVN-RVGASRLQHISEVLESPISF 72 VG R++ R+ G++ EK+ L I K +E N G Q I++ +++ Sbjct: 65 VGSRLKQLRLNSGLTIEKVCNDLKIEDLDYWKLWETQDNITFGKELAQEIADYFSVDVNY 124 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 + V ++ SS E N +F+ + Sbjct: 125 LLGKTNIVNTNFSSIEQNDKEFLYSK 150 >gi|222153050|ref|YP_002562227.1| phage repressor-like protein [Streptococcus uberis 0140J] gi|222113863|emb|CAR42005.1| putative phage repressor-like protein [Streptococcus uberis 0140J] Length = 230 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK+++ R MSQE LG+ LG+ + +EKG N L + E+ F Sbjct: 4 GKQLKTIRQKHQMSQESLGQKLGVNKMTISNWEKGKNVPNQKHLNQLLEIFHLDADSF 61 >gi|167567036|ref|ZP_02359952.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia oklahomensis EO147] Length = 191 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L ++ ++ GI+ + + E+G + L I+ L + +F Sbjct: 15 IGIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTMQYFV 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSS 129 D S SE ++ F ++ +V +++ LVR + Sbjct: 75 DAPTEARSVCRSEALQYFSLANS------TNAFARLTNVVDGRQLDAILVRMPAAQ 124 >gi|118478631|ref|YP_895782.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196042846|ref|ZP_03110085.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225865314|ref|YP_002750692.1| DNA-binding protein [Bacillus cereus 03BB102] gi|300118327|ref|ZP_07056074.1| DNA-binding protein [Bacillus cereus SJ1] gi|118417856|gb|ABK86275.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196026330|gb|EDX64998.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225788363|gb|ACO28580.1| DNA-binding protein [Bacillus cereus 03BB102] gi|298724296|gb|EFI64991.1| DNA-binding protein [Bacillus cereus SJ1] Length = 67 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I+ L S I F F+ Sbjct: 6 KIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 76 VS 77 Sbjct: 66 DE 67 >gi|187921133|ref|YP_001890165.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719571|gb|ACD20794.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G R++ R+ G+SQ++LG G + ++ +YE GV++V + ++ VL+ P++ Sbjct: 10 GTRLKEARLEAGLSQKRLGIEAGLDPFVASTRINRYELGVHKVDHTFASRLATVLKVPVA 69 Query: 72 FFFDVSPTVCS 82 F + + Sbjct: 70 FLYAEDSDLAQ 80 >gi|238797083|ref|ZP_04640586.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] gi|238719128|gb|EEQ10941.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] Length = 88 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 28 MSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 MSQ+KLG G + ++ +YEKGV+ V + +++VLE P+++F+ + Sbjct: 1 MSQKKLGIAAGLDEFVASTRINRYEKGVHEVSITTANQLAQVLEVPLAYFYTADDALAE 59 >gi|117926057|ref|YP_866674.1| phage repressor [Magnetococcus sp. MC-1] gi|117609813|gb|ABK45268.1| putative phage repressor [Magnetococcus sp. MC-1] Length = 264 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R+ LG+SQ+KL + G++ + K E G G ++ I+ L+ + Sbjct: 33 LGHRLKDARLALGLSQKKLADKAGVSQGLIHKLETGFYE-GTGQIVPIAGALDVRPEWL 90 >gi|47565539|ref|ZP_00236580.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47557529|gb|EAL15856.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 137 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 8/102 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ ++ R G SQ + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MNLGELLKKLRESKGFSQGDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD-------GLQLNRYF 107 + I S+ + DF + GL + F Sbjct: 61 LIKGNQDFKKKIHSDAED-EDFEKGNEFGFYIGCGLLILSAF 101 >gi|329846732|ref|ZP_08262005.1| hypothetical protein ABI_00390 [Asticcacaulis biprosthecum C19] gi|328844239|gb|EGF93807.1| hypothetical protein ABI_00390 [Asticcacaulis biprosthecum C19] Length = 61 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 +L +S + L L + + +E+G+ R+ AS L I +L+ PI FFFD + Sbjct: 1 MLKLSADALASRLFLPVAVIYAFEEGMVRIRASTLHDIGNILKVPIRFFFDGYTASADND 60 Query: 85 S 85 + Sbjct: 61 A 61 >gi|311900356|dbj|BAJ32764.1| putative UDP-N-acetylglucosamine transferase [Kitasatospora setae KM-6054] Length = 509 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK +R R G +Q +L LG T V + E G +G + I E L+S I Sbjct: 9 IGKLVRAARTHKGWTQSQLAAALGTTQSAVARIESGGQNIGLDLVARIGEALDSEI 64 >gi|302327864|gb|ADL27065.1| DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 75 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++L R G +Q++L + GIT QQV E+G +G ++ L + F Sbjct: 19 LKLLRTTFGYTQQQLADKAGITKQQVSAMERGKEPIGRKMAHRLANALGTSYKNLF 74 >gi|297624714|ref|YP_003706148.1| XRE family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165894|gb|ADI15605.1| transcriptional regulator, XRE family [Truepera radiovictrix DSM 17093] Length = 93 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ + R G+S++ L + +G+ +Q + E+G +++ PI F Sbjct: 10 NRLAVLRAERGLSRQALADAVGVNYQTIGYLERGDYNPSLELAFRFAKLFGLPIEAIFST 69 Query: 77 SP 78 P Sbjct: 70 EP 71 >gi|296503848|ref|YP_003665548.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296324900|gb|ADH07828.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 67 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I++ L S I F F+ Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFE 65 Query: 76 V 76 Sbjct: 66 D 66 >gi|291541918|emb|CBL15028.1| looped-hinge helix DNA binding domain, AbrB family [Ruminococcus bromii L2-63] Length = 136 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-- 72 +G ++ R G SQE L E L ++ Q V K+E + + ++++ E+ + Sbjct: 2 IGMNLKYLRKKYGYSQEDLAERLEVSRQSVAKWENEESLPDVEKCVTMAQIFETTVEMLL 61 Query: 73 ---FFDVSPTVCSDISS 86 F++ + Sbjct: 62 VCPFYEEESDALTPDGD 78 >gi|260430057|ref|ZP_05784032.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260418980|gb|EEX12235.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 184 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 15/115 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG IR R G++ + L E G + + E+G L+ I+ + I Sbjct: 1 MNRQVGTDIRALRKSRGLTLQALAEATGRSAGWLSLIERGQAEPSIRDLEKIAALFGLTI 60 Query: 71 SFFFDVSPTVCSD------------ISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 SFFF + + I S+E+ +++ + +P L+ F I V Sbjct: 61 SFFFRSAGRAEREQGLVLRQEDRMPIGSDESGLVEELLSP---SLDGAFEMIRSV 112 >gi|210617721|ref|ZP_03291715.1| hypothetical protein CLONEX_03939 [Clostridium nexile DSM 1787] gi|210149163|gb|EEA80172.1| hypothetical protein CLONEX_03939 [Clostridium nexile DSM 1787] Length = 228 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 14/109 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG IR R+ + + L + ++ + KYEKG+ V L+ EV P Sbjct: 3 INERVGNNIRKYRIAHHYTLKDLSALVHKSYSTLSKYEKGILPVSVETLEEFGEVFHIPT 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 S D+S + L + + + R++I Sbjct: 63 SHLLSAPSEGKPDVSRKS--------------LLKKYYMYNYDGRRKRI 97 >gi|189465130|ref|ZP_03013915.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM 17393] gi|218131566|ref|ZP_03460370.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697] gi|189437404|gb|EDV06389.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM 17393] gi|217986235|gb|EEC52573.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697] Length = 117 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ ++ R + G +QE++ + +GI YE G V L+ +S + Sbjct: 4 INQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERLSNLFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 F+ + ++I + + D Sbjct: 64 FILFEDNIQADNEIMATAFRISDL 87 >gi|167554296|ref|ZP_02348037.1| HTH-type transcriptional regulator DicA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321471|gb|EDZ09310.1| HTH-type transcriptional regulator DicA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 133 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 24/119 (20%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF--F 73 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ F Sbjct: 7 GARLLARRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFSLSQALQCSPTWLLF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D I+ + D ++++++L ++ SE+K Sbjct: 67 GDEDKQPAEPIAPPPDLRDD----------------------QKELLKLYEALPESEQK 103 >gi|160914122|ref|ZP_02076344.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] gi|158433933|gb|EDP12222.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] Length = 124 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R G++Q++L + ++ + VQ E+GV L+ +VL + Sbjct: 5 KELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDS 64 Query: 73 FFDVSPTVCSDISSE 87 ++ +++ Sbjct: 65 LMNLDLPEDEQAAND 79 >gi|157150934|ref|YP_001450194.1| Cro/CI family transcriptional regulator putative [Streptococcus gordonii str. Challis substr. CH1] gi|262282528|ref|ZP_06060296.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|157075728|gb|ABV10411.1| transcriptional regulator, Cro/CI family, putative [Streptococcus gordonii str. Challis substr. CH1] gi|262261819|gb|EEY80517.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 136 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K I + R +SQEKL E +G++ Q + K+E G + +++ + + Sbjct: 2 ISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADYFDVSLD 58 >gi|154483937|ref|ZP_02026385.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC 27560] gi|149734979|gb|EDM50865.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC 27560] Length = 98 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R G +QE E L I+ + E G + ++ +L++ + + Sbjct: 9 GKRIKELRKAKGYTQESFAEELNISHRTYSGIELGNHSTTIETFVEMASILDTTLDYLII 68 Query: 76 V--SPTVCSDISSEENNVM 92 S + +D+ E+ + Sbjct: 69 GRKSSELLTDVPEEKKELA 87 >gi|138893751|ref|YP_001124204.1| Xre family transcriptional regulator [Geobacillus thermodenitrificans NG80-2] gi|196250794|ref|ZP_03149481.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134265264|gb|ABO65459.1| Transcriptional regulator Xre family [Geobacillus thermodenitrificans NG80-2] gi|196209744|gb|EDY04516.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 73 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE+L + LG++ + + E+G S ++ I+E+L + Sbjct: 7 GRRIRAFRKLKGYTQERLAKELGVSVSILGEIERGNRMPSDSLVEQIAELLNISV 61 >gi|30261146|ref|NP_843523.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|30254760|gb|AAP25009.1| DNA-binding protein [Bacillus anthracis str. Ames] Length = 73 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITID 59 >gi|56964628|ref|YP_176359.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16] gi|56910871|dbj|BAD65398.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16] Length = 209 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + R+ G SQ L E L ++ + +YEKG +L I++VL++ I Sbjct: 10 ENLMKARIRKGYSQTDLAEILNVSSATISQYEKGKRSPDVEKLHTIAKVLDTTI 63 >gi|18978223|ref|NP_579580.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] gi|18894036|gb|AAL81975.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] Length = 316 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+R R G S +L E LG++ + VQ+YEKG V + E+ + P+ Sbjct: 129 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEGMVSIDVAIRLEEIFDEPL 183 >gi|328553993|gb|AEB24485.1| DNA-binding protein [Bacillus amyloliquefaciens TA208] Length = 128 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KR+++ R ++Q +L + + T + YE G + L+ +++ L++ + Sbjct: 2 LSKRLKICRKQKKLTQTELAQKVKTTKGTISNYENGHSTPSNEMLRDLADALDTTTDYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEKK 132 + E + D D LQL F + D + +++ I+ ++ + E++ Sbjct: 62 -GRIDNHMNFIRESSEFYDTFGDDD-LQL--AFREARDFSEESQKQAIDFIKYLKEKEER 117 >gi|319646362|ref|ZP_08000592.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] gi|317392112|gb|EFV72909.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 82 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 13 INVGKRIRLRRMILG--MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+R+++ R +SQE L E LGI +YE G N G L I++ + + Sbjct: 1 MTLGERLKMLRNKQKPKLSQETLSEELGINRSTYARYETGDNDPGYKTLIKIADFYKVSL 60 Query: 71 SFFFDVSPTVCSD 83 + D Sbjct: 61 DYLIQGIVKQEQD 73 >gi|291559127|emb|CBL37927.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 278 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVS 77 I R GMSQ+ L + + +T Q V ++E G L+ +S+ + I+ + Sbjct: 30 ILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTVPNTDTLRLLSKEFDVSINMLLGEPR 89 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +C ++ DG LN + + Sbjct: 90 KLICQCCGMPMDDDSILGRDKDG-TLNEEYCK 120 >gi|225377886|ref|ZP_03755107.1| hypothetical protein ROSEINA2194_03546 [Roseburia inulinivorans DSM 16841] gi|225210255|gb|EEG92609.1| hypothetical protein ROSEINA2194_03546 [Roseburia inulinivorans DSM 16841] Length = 107 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+RI+ R M++++L E +G++ ++K E GVN L I+E+ + + Sbjct: 9 GERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHITLDYL 66 >gi|167765761|ref|ZP_02437814.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1] gi|167712478|gb|EDS23057.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1] Length = 264 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVS 77 I R GMSQ+ L + + +T Q V ++E G L+ +S+ + I+ + Sbjct: 16 ILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTVPNTDTLRLLSKEFDVSINMLLGEPR 75 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +C ++ DG LN + + Sbjct: 76 KLICQCCGMPMDDDSILGRDKDG-TLNEEYCK 106 >gi|150020470|ref|YP_001305824.1| cupin 2 domain-containing protein [Thermosipho melanesiensis BI429] gi|149792991|gb|ABR30439.1| Cupin 2, conserved barrel domain protein [Thermosipho melanesiensis BI429] Length = 178 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R+ G +QE+L + ++ + + E L+ I VL S + FF Sbjct: 4 LGSKIRTLRVARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDLKTFF 63 Query: 75 DVSPTVC 81 Sbjct: 64 SNDKRQE 70 >gi|118574103|sp|Q8TZX4|Y1851_PYRFU RecName: Full=Putative HTH-type transcriptional regulatory protein PF1851 Length = 315 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+R R G S +L E LG++ + VQ+YEKG V + E+ + P+ Sbjct: 128 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEGMVSIDVAIRLEEIFDEPL 182 >gi|77919058|ref|YP_356873.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545141|gb|ABA88703.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 33/72 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK+++ R+ G++ + L G++ + + E+G+ L ++ L I Sbjct: 2 IKTLIGKKLKTTRLGKGLTIQGLTNLSGVSANMISRIERGLTVPSVKILMKLASALGMSI 61 Query: 71 SFFFDVSPTVCS 82 +F + + + Sbjct: 62 GYFVEEAEKSST 73 >gi|19705233|ref|NP_602728.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329087|ref|ZP_06871592.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713186|gb|AAL94027.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153806|gb|EFG94619.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 184 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 33/73 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDIS 85 + +I Sbjct: 61 LIEDEEDDIRNIE 73 >gi|15837298|ref|NP_297986.1| phage-related repressor protein [Xylella fastidiosa 9a5c] gi|9105580|gb|AAF83506.1|AE003913_2 phage-related repressor protein [Xylella fastidiosa 9a5c] Length = 221 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D+ +G RIR R G+S+ +L + GI + E G +R + L I+E L Sbjct: 2 HDMKIGSRIRAERENQGISRTELAKFAGIATSTLSDLELGHSR-STTALHKIAERLGVSA 60 Query: 71 SFFFDVSPTVCSDISSEE 88 + +D Sbjct: 61 QWLETGRGEKSTDTFPAP 78 >gi|331086747|ref|ZP_08335824.1| hypothetical protein HMPREF0987_02127 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409913|gb|EGG89348.1| hypothetical protein HMPREF0987_02127 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 242 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 10/101 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ RR++L +S++KL E IT Q + YE G++ L + + LE ++ Sbjct: 1 MSLGDRLKERRVMLNLSRKKLSEITYITPQALANYENGISTPKFEILVSLFQSLECDANY 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + D P DF T + L + Q++D Sbjct: 61 LYQDYLPANLQ---------TDFNITKNEQDLIEKYRQLND 92 >gi|325663144|ref|ZP_08151594.1| hypothetical protein HMPREF0490_02335 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470598|gb|EGC73828.1| hypothetical protein HMPREF0490_02335 [Lachnospiraceae bacterium 4_1_37FAA] Length = 242 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 10/101 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ RR++L +S++KL E IT Q + YE G++ L + + LE ++ Sbjct: 1 MSLGDRLKERRVMLNLSRKKLSEITYITPQALANYENGISTPKFEILVSLFQSLECDANY 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + D P DF T + L + Q++D Sbjct: 61 LYQDYLPANLQ---------TDFNITKNEQDLIEKYRQLND 92 >gi|225571479|ref|ZP_03780475.1| hypothetical protein CLOHYLEM_07577 [Clostridium hylemonae DSM 15053] gi|225159955|gb|EEG72574.1| hypothetical protein CLOHYLEM_07577 [Clostridium hylemonae DSM 15053] Length = 361 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK I+ R + G +QE++ E LG++ V K+E GV+ + L ++ L++ ++ Sbjct: 4 QLGKTIQQMRKVQGCTQEQMAETLGVSVAAVSKWENGVSCPDITLLPALARYLKTDLN 61 >gi|153813072|ref|ZP_01965740.1| hypothetical protein RUMOBE_03480 [Ruminococcus obeum ATCC 29174] gi|153814732|ref|ZP_01967400.1| hypothetical protein RUMTOR_00947 [Ruminococcus torques ATCC 27756] gi|154502995|ref|ZP_02040055.1| hypothetical protein RUMGNA_00817 [Ruminococcus gnavus ATCC 29149] gi|317501372|ref|ZP_07959574.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|145847763|gb|EDK24681.1| hypothetical protein RUMTOR_00947 [Ruminococcus torques ATCC 27756] gi|149830874|gb|EDM85964.1| hypothetical protein RUMOBE_03480 [Ruminococcus obeum ATCC 29174] gi|153796349|gb|EDN78769.1| hypothetical protein RUMGNA_00817 [Ruminococcus gnavus ATCC 29149] gi|295107719|emb|CBL21672.1| Helix-turn-helix. [Ruminococcus obeum A2-162] gi|316897236|gb|EFV19305.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] Length = 209 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR L ++Q + E +G+T +Q+YE G + +SE L + Sbjct: 8 KLIGSRAKQRRTELNLTQPYIAEKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ + Sbjct: 68 WLRGETDEYETDITDKRE 85 >gi|186470704|ref|YP_001862022.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197013|gb|ACC74976.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 213 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +GK ++ R G++ L E G++ V K E G + ++ L Sbjct: 21 SIESFLGKVVKEHRTNQGLTIADLAEQSGLSRSMVSKIENGQVSTSLDSIVSLARALGIS 80 Query: 70 ISFFFDVSPTVCSDISS 86 IS F + Sbjct: 81 ISALFKNFEHREGNAQH 97 >gi|94989193|ref|YP_597294.1| transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94993080|ref|YP_601179.1| transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|94542701|gb|ABF32750.1| transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94546588|gb|ABF36635.1| Transcriptional regulator [Streptococcus pyogenes MGAS2096] Length = 198 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R +SQEKL E + +++Q + +E L +S++ + + Sbjct: 4 MEIGQQIIRYRKQQALSQEKLAEKVYVSYQSISNWENDKTYPDIHSLLLLSQIFQVSLD 62 >gi|88802552|ref|ZP_01118079.1| hypothetical protein PI23P_08180 [Polaribacter irgensii 23-P] gi|88781410|gb|EAR12588.1| hypothetical protein PI23P_08180 [Polaribacter irgensii 23-P] Length = 297 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 11 VDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + GK + R G++Q ++ E +T + +Q+ E G +S ++ IS+ LE Sbjct: 1 MDTLIFGKELIKARKARGLTQAEVAEKCNVTIRTIQRIESGEVTPRSSTIKIISKFLEVD 60 Query: 70 ISFFFDVS 77 FF++S Sbjct: 61 ---FFEIS 65 >gi|117926204|ref|YP_866821.1| phage repressor [Magnetococcus sp. MC-1] gi|117609960|gb|ABK45415.1| putative phage repressor [Magnetococcus sp. MC-1] Length = 264 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R+ LG+SQ+KL + G++ + K E G G ++ I+ L+ + Sbjct: 33 LGHRLKDARLALGLSQKKLADKAGVSQGLIHKLETGFYE-GTGQIVPIAGALDVRPEWL 90 >gi|330465134|ref|YP_004402877.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328808105|gb|AEB42277.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 195 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+R+R R G+S L G+ + E G L I+ L P++ Sbjct: 28 IGRRVRALREARGISLSALARQAGVGKATLSGLENGTRNPTLETLYAITAQLGVPLT 84 >gi|327472731|gb|EGF18158.1| transcriptional regulator [Streptococcus sanguinis SK408] Length = 71 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWD 61 Query: 77 SPTVCSD 83 D Sbjct: 62 PQLTDED 68 >gi|323190487|gb|EFZ75761.1| helix-turn-helix family protein [Escherichia coli RN587/1] Length = 238 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 27/41 (65%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 + +RIR RR +G++Q+++ + +GI+ V K+E G ++ Sbjct: 19 ISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSKPD 59 >gi|320658814|gb|EFX26482.1| putative phage repressor protein [Escherichia coli O55:H7 str. USDA 5905] Length = 238 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 27/41 (65%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 + +RIR RR +G++Q+++ + +GI+ V K+E G ++ Sbjct: 19 ISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSKPD 59 >gi|331674164|ref|ZP_08374924.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli TA280] gi|331068258|gb|EGI39653.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli TA280] Length = 229 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 5/111 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 RI G SQ +L LG++ Q VQ + G +RL +SE+ P S+F + Sbjct: 9 NRITKLLQEKGWSQAELARKLGVSAQSVQYWTTGKTFPRGNRLAQLSEISGYPQSWFLGE 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++ S + + L+ F D VR I++VRSI Sbjct: 69 ITSRQFSSKEKHQTRTDSVVFN----VLDVEFSCGDGTHVRGDFIDVVRSI 115 >gi|227502798|ref|ZP_03932847.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] gi|227076528|gb|EEI14491.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] Length = 437 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 49/125 (39%), Gaps = 11/125 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G++Q + + LG++ + + E + + L +++ S+F + Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDPSYFAE 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELV-RSIVSSEKKY 133 I+ + D ++ + L L F ++ + +++ R+ + + Sbjct: 67 DRD--IHTITELRHIFPD--ASEETLSDLASRFPELMP-----RFVDVASRAPAADPSPF 117 Query: 134 RTIEE 138 + + Sbjct: 118 EVVRD 122 >gi|255283309|ref|ZP_05347864.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255266163|gb|EET59368.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 224 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++++ R G SQE+L + +GI Q V K+E G + L +SE+ I Sbjct: 5 EKLQMLRKKNGYSQEQLADKIGIARQTVSKWENGQAIPELNGLILLSELYGVTIDRIVKD 64 Query: 77 SPT----VCSDISSEENNVMDFISTP 98 +C + N V+ F+ + Sbjct: 65 DDECNILLCKSADIDLNKVVSFLVSA 90 >gi|194289442|ref|YP_002005349.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223277|emb|CAQ69282.1| putative transcriptional regulator, ATP-binding kinase, Helix-turn-helix motif, Shikimate kinase motif [Cupriavidus taiwanensis LMG 19424] Length = 315 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 42/97 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+RIR R GMS++ L ++ + + E G L+ ++ L+ Sbjct: 29 DPYLTQLGERIRSLRASRGMSRKDLARGAAVSERYLANLETGTGNASVLLLRQVARALDV 88 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P+ T+ +SE ++ +++ +L R Sbjct: 89 PLPVVLAEVDTLNGQQASEFAQMVQWLAQLPAGELAR 125 >gi|161519811|ref|YP_001583238.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343861|gb|ABX16946.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 193 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 10/115 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L + ++ GI+ + + E+G+ + L I++ L + +F Sbjct: 17 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYFV 76 Query: 75 DVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 D S E+ F + +G QL +++ + R ++ Sbjct: 77 DTPSEERSVCRGEQLRFFGFADSANLFARLTNLSEGRQLEAILVRMPPGQKRSEV 131 >gi|193070021|ref|ZP_03050968.1| repressor protein C2 [Escherichia coli E110019] gi|260867149|ref|YP_003233551.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|192956618|gb|EDV87074.1| repressor protein C2 [Escherichia coli E110019] gi|257763505|dbj|BAI35000.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|323175391|gb|EFZ60986.1| helix-turn-helix family protein [Escherichia coli 1180] Length = 224 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 27/41 (65%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 + +RIR RR +G++Q+++ + +GI+ V K+E G ++ Sbjct: 5 ISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSKPD 45 >gi|75761940|ref|ZP_00741861.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898416|ref|YP_002446827.1| DNA-binding protein [Bacillus cereus G9842] gi|74490571|gb|EAO53866.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540574|gb|ACK92968.1| DNA-binding protein [Bacillus cereus G9842] Length = 67 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I++ L S I F F+ Sbjct: 6 KIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFE 65 Query: 76 V 76 Sbjct: 66 D 66 >gi|323342274|ref|ZP_08082506.1| repressor lexA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463386|gb|EFY08580.1| repressor lexA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 118 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+R++ RR L +SQ++L +G + + K E GV + S++ I+E LE+ Sbjct: 5 LGQRLKARRKELRISQQELAVAVGYTSRSTIAKIEAGVIDLPQSKIYDIAEALET 59 >gi|149907858|ref|ZP_01896526.1| DNA-binding protein [Moritella sp. PE36] gi|149808864|gb|EDM68795.1| DNA-binding protein [Moritella sp. PE36] Length = 214 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++I+ +G R++ R G S +K + G++ + + E+G + +L +I+ E Sbjct: 19 INIHTSLGSRLKTARSNKGWSLDKTSQHTGVSKAMLGQIERGESSPTVVKLWNIANGFEL 78 Query: 69 PISFFFDVSPTVCSDISS 86 P+S+F ++ S+ Sbjct: 79 PLSYFLTDLAQTQAETSA 96 >gi|148358304|ref|YP_001249511.1| phage repressor [Legionella pneumophila str. Corby] gi|296105654|ref|YP_003617354.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99 Alcoy] gi|148280077|gb|ABQ54165.1| phage repressor [Legionella pneumophila str. Corby] gi|295647555|gb|ADG23402.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99 Alcoy] Length = 219 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ ++LGE G+ ++ +E+G G ++ +++ L+ Sbjct: 3 IKKEIGKRIFEARKEKGLTLKELGELTGGLKQTRLTNWEQGTRAPGPEEIKLLAQALDVS 62 Query: 70 ISFFF 74 +F Sbjct: 63 PAFLM 67 >gi|229189448|ref|ZP_04316465.1| hypothetical protein bcere0002_11280 [Bacillus cereus ATCC 10876] gi|228594039|gb|EEK51841.1| hypothetical protein bcere0002_11280 [Bacillus cereus ATCC 10876] Length = 69 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R +G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKIGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|197261594|ref|YP_002154411.1| helix-turn-helix domain protein [Bacillus phage IEBH] gi|197092466|gb|ACH42341.1| helix-turn-helix domain protein [Bacillus phage IEBH] Length = 79 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G R+R R ++QEKL + L + + E G R+ A ++ ++ L I Sbjct: 1 MTFGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSID 60 Query: 72 FFF 74 F Sbjct: 61 ELF 63 >gi|146311755|ref|YP_001176829.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145318631|gb|ABP60778.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 191 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+ ++ + RIRL R G S +L E G++ + K E+ + A+ L +S Sbjct: 4 MPDDMNHRISARIRLERESRGWSLSELAERAGVSRAMIHKIERSESSPTATLLARLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|110641376|ref|YP_669106.1| transcriptional regulator [Escherichia coli 536] gi|191170900|ref|ZP_03032451.1| probable transcriptional regulator [Escherichia coli F11] gi|218689103|ref|YP_002397315.1| putative transcriptional regulator [Escherichia coli ED1a] gi|110342968|gb|ABG69205.1| probable transcriptional regulator [Escherichia coli 536] gi|190908632|gb|EDV68220.1| probable transcriptional regulator [Escherichia coli F11] gi|218426667|emb|CAR07498.1| conserved hypothetical protein , putative transcriptional regulator [Escherichia coli ED1a] gi|324015721|gb|EGB84940.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 60-1] Length = 194 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 4 NKKIPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K+ N + D ++ + + R ++ +L + G++ + K E+G + A+ L + Sbjct: 2 DKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRL 61 Query: 63 SEVLESPISFFF 74 + L +S F Sbjct: 62 ANALNITLSKLF 73 >gi|194467261|ref|ZP_03073248.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454297|gb|EDX43194.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 74 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ KL + +G+ Q + E ++++ L + ++ F Sbjct: 2 NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLF 59 >gi|150016139|ref|YP_001308393.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902604|gb|ABR33437.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 184 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R +S ++ + G++ + + E+G + S L IS L+ SFF Sbjct: 8 IGSKLKEIRNKRELSLDEAAKLTGVSKAMLGQIERGQSNPTVSTLWKISTGLKVSFSFFI 67 Query: 75 DVSPTVCS 82 D Sbjct: 68 DEEQDELE 75 >gi|325568711|ref|ZP_08145004.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157749|gb|EGC69905.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 263 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R ++QE+L + +T Q + K+E G + ++ +S E + + Sbjct: 1 MDIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSNYFELTLDY 60 Query: 73 FFDVSPTVCSDI 84 + ++ Sbjct: 61 LLKEDKQMVQEL 72 >gi|313898821|ref|ZP_07832355.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956403|gb|EFR38037.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 73 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK D +I + R MSQ++L + +G++ Q + + E+ I++ Sbjct: 3 KKNKYSFD----SKIHVYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAK 58 Query: 65 VLESPISFFFDVSPT 79 V + I FD Sbjct: 59 VFDVTIEDLFDFRED 73 >gi|229160318|ref|ZP_04288317.1| Helix-turn-helix repressor protein [Bacillus cereus R309803] gi|228623279|gb|EEK80106.1| Helix-turn-helix repressor protein [Bacillus cereus R309803] Length = 69 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|169346966|ref|ZP_02865914.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297025|gb|EDS79149.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 349 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 7 IKEKRNAQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKVDLN 59 >gi|167574113|ref|ZP_02366987.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia oklahomensis C6786] Length = 191 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L ++ ++ GI+ + + E+G + L I+ L + +F Sbjct: 15 IGIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTMQYFV 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSS 129 D S SE ++ F ++ +V +++ LVR + Sbjct: 75 DAPTEARSVCRSEALQYFSLANS------TNAFARLTNVVDGRQLDAILVRMPAAQ 124 >gi|30019406|ref|NP_831037.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229126668|ref|ZP_04255680.1| Helix-turn-helix repressor protein [Bacillus cereus BDRD-Cer4] gi|296501947|ref|YP_003663647.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|29894950|gb|AAP08238.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|228656608|gb|EEL12434.1| Helix-turn-helix repressor protein [Bacillus cereus BDRD-Cer4] gi|296322999|gb|ADH05927.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 69 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|312126655|ref|YP_003991529.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776674|gb|ADQ06160.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 77 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK++R R+ +SQ++L + G+ + E ++ ++ L I F Sbjct: 2 VGKKLRELRIQKRLSQQQLAKIAGVPQSTIWYIESENRNPTIKTMKRLATALGVSIEEFL 61 Query: 75 DVS 77 D Sbjct: 62 DSE 64 >gi|291529806|emb|CBK95391.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P D G R++ R ++QE++ + LG++ + KYE L +S+ L Sbjct: 4 PYD--FGARLKKYRNEKNITQERIAKILGVSNSMISKYENNTASPSLDSLCTLSKELCVS 61 Query: 70 IS 71 I Sbjct: 62 ID 63 >gi|260432343|ref|ZP_05786314.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416171|gb|EEX09430.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157] Length = 198 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++ + L + + + E+ ++ S L+ I+E L P+S F Sbjct: 20 LGADIRALRKSRGLTLTDVARRLDRSVGWLSQVERDLSEPSISDLRQIAECLGVPMSMLF 79 >gi|229074620|ref|ZP_04207643.1| Helix-turn-helix repressor protein [Bacillus cereus Rock4-18] gi|229095849|ref|ZP_04226828.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-29] gi|229114801|ref|ZP_04244215.1| Helix-turn-helix repressor protein [Bacillus cereus Rock1-3] gi|228668866|gb|EEL24294.1| Helix-turn-helix repressor protein [Bacillus cereus Rock1-3] gi|228687682|gb|EEL41581.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-29] gi|228708502|gb|EEL60652.1| Helix-turn-helix repressor protein [Bacillus cereus Rock4-18] Length = 71 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|255655753|ref|ZP_05401162.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451015|ref|ZP_06892760.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879020|ref|ZP_06903017.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260146|gb|EFH06996.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429973|gb|EFH15823.1| DNA-binding protein [Clostridium difficile NAP07] Length = 181 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+N+G++I R +S L + +T + + E+G+ + L+ I+ L P+ Sbjct: 3 DLNLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLF 62 Query: 72 FFF 74 FF Sbjct: 63 TFF 65 >gi|300765733|ref|ZP_07075710.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|300513606|gb|EFK40676.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] Length = 158 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 3/92 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G SQ KL + LG + QV YE+G L I+E + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 ++ + +D ++ + ++ +I Sbjct: 64 DDNNLAETIAAH---IDSNASEEDIKEILAYI 92 >gi|301052920|ref|YP_003791131.1| transcriptional regulator [Bacillus anthracis CI] gi|300375089|gb|ADK03993.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 107 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE-ENNVMDFIST 97 T + + SE V D +S+ Sbjct: 62 LHDETTKENHLDSEWTQLVKDAMSS 86 >gi|288553474|ref|YP_003425409.1| putative transcriptional regulator XRE [Bacillus pseudofirmus OF4] gi|288544634|gb|ADC48517.1| putative transcriptional regulator XRE [Bacillus pseudofirmus OF4] Length = 188 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G R++ R+ G S + L + ++ + + E+G + L I++ L Sbjct: 6 LSKLIGVRLKALRVEQGYSLDHLAQITTVSKPMLGQIERGESNPTVGTLWKIAKGLNVSF 65 Query: 71 SFFFDVSPTVCSDISSEE 88 + F + + + EE Sbjct: 66 TSFLEEEQDAVTVVKKEE 83 >gi|237731580|ref|ZP_04562061.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907119|gb|EEH93037.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 191 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ + RIR+ R G S +L E G++ + K E+G + A+ L +S Sbjct: 4 IEDSINQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|223984758|ref|ZP_03634870.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] gi|223963244|gb|EEF67644.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] Length = 180 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 5/103 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V I+ R +S E+L + ++ + + E+G S L IS L+ P Sbjct: 5 VAANIKRLREERKLSMEELAKFSSVSKSMIAQIERGEGNPTLSTLWKISNGLKVPFDSLT 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 T + E + + +G R + D + R+ Sbjct: 65 VRPKTQHEIVKISE---IQPLFENEG--KVRNYSLFPDDENRR 102 >gi|209967957|ref|YP_002265383.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238] gi|208011481|emb|CAQ81944.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238] Length = 205 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+SQE L E + +T + ++E G + L I ++ + Sbjct: 4 IGERIKSLRLNQGLSQESLAEKINVTKSTISQWEVGKAQPKNKNLLSIVTFFDTTYEYL 62 >gi|163737060|ref|ZP_02144478.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis BS107] gi|161389664|gb|EDQ14015.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis BS107] Length = 205 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P P+ +G IR RR +G++ + L + G++ + + E+ L Sbjct: 11 AKTRSSPGPM---LGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNATPTLGTLAQ 67 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 I+ LE + +F ++ SD + F Sbjct: 68 IASALEVGLEYF--IATPKPSDALTRATTRTQF 98 >gi|163740517|ref|ZP_02147911.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis 2.10] gi|161386375|gb|EDQ10750.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P P+ +G IR RR +G++ + L + G++ + + E+ L Sbjct: 11 AKTRSSPGPM---LGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNATPTLGTLAQ 67 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 I+ LE + +F ++ SD + F Sbjct: 68 IASALEVGLEYF--IATPKPSDALTRATTRTQF 98 >gi|158320320|ref|YP_001512827.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140519|gb|ABW18831.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 130 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R S + E G++ + + E + A LQ I+ LE + Sbjct: 1 MTLGEKIRALRKEKRYSIMNIRELTGLSKSTISEIENDKSSPTAETLQKIANALEVTVDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF D S + N+ +F + + ++ Sbjct: 61 FFKDDDH---DESLSQQNI-EFTTPQEAME 86 >gi|16766060|ref|NP_461675.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16421295|gb|AAL21634.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261247891|emb|CBG25722.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994850|gb|ACY89735.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159316|emb|CBW18832.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131102|gb|ADX18532.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989625|gb|AEF08608.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 118 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 + I +GKR+++ R+ ++Q +LG G+ ++ YEK V+ + ++ L Sbjct: 20 IAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAAL 79 Query: 67 ESPISFFFDVSPTVCS 82 + P ++F+ V + Sbjct: 80 DVPEAYFYAVDDELAE 95 >gi|330901746|gb|EGH33165.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 118 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 2/107 (1%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + P PV +V + +R R +SQ L E G++ + + E G V + L + Sbjct: 4 ENSQRP-PVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRV 62 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +E LE S +E + + L R + Sbjct: 63 AEALEVAFSDLIQAPENHDYSRINELAWAGTIAGSK-AVLLARAVAR 108 >gi|313673082|ref|YP_004051193.1| transcriptional regulator, merr family [Calditerrivibrio nitroreducens DSM 19672] gi|312939838|gb|ADR19030.1| transcriptional regulator, MerR family [Calditerrivibrio nitroreducens DSM 19672] Length = 178 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++IR R LGM+ E + G T + + E G N + L+ I + IS F+ Sbjct: 4 GEKIRDIRKRLGMTLEDVSLKTGFTKSFISQIENGKNSPSIASLKKICYAIGISISELFE 63 Query: 76 VS 77 Sbjct: 64 DE 65 >gi|301794241|emb|CBW36661.1| Phage transcriptional regulator [Streptococcus pneumoniae INV104] Length = 167 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 RI+ R ++Q +L I ++ +Q++E G + + Q +++ I Sbjct: 5 NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLLGY 64 Query: 75 -DVSPTVCSDI-SSEENNVMDFISTPDGLQLNRYFIQIDDV 113 D+ SDI + ++++ F+ + + FI+ +D Sbjct: 65 SDLIADTDSDIKAMAYSHLLTFVDEKQIKEFEKEFIRANDN 105 >gi|169335374|ref|ZP_02862567.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis DSM 17244] gi|169258112|gb|EDS72078.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis DSM 17244] Length = 225 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G ++ R G+SQE +G++ Q + K+E + +L IS++ + + Sbjct: 1 MDLGNKLYTLRKQKGISQETAANEIGVSRQTISKWETNSSYPEFDKLVLISKLYDISLD 59 >gi|167758542|ref|ZP_02430669.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC 35704] gi|167663738|gb|EDS07868.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC 35704] Length = 94 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 5/95 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R M+Q L + L IT V +E G++ + L +S++ + Sbjct: 1 MMIADKIKQLRTSRDMTQSDLAKKLNITRSSVNAWEMGLSTPSTAYLVELSQLFHVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 +S DIS+ + + L +YF Sbjct: 61 LLGLSGNATLDISNLSEKEVQIV-----YDLVQYF 90 >gi|118477924|ref|YP_895075.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|118417149|gb|ABK85568.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] Length = 69 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G +QE+L + +G++ Q + EK I+ V E I+ FD Sbjct: 7 NRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDVFDY 66 Query: 77 SPT 79 Sbjct: 67 QEE 69 >gi|86739602|ref|YP_480002.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566464|gb|ABD10273.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 81 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R +R LG+SQE+L + G+ + V + E+G + + +++ L+ + Sbjct: 14 GERVRAQRHELGLSQEQLADECGLHWTFVGQVERGRRNISLHNILKLADALKIDPAELVR 73 Query: 76 VSPTVCSD 83 ++ Sbjct: 74 GLQAPSNE 81 >gi|90961232|ref|YP_535148.1| Cro-like protein, phage associated [Lactobacillus phage Sal2] gi|301300635|ref|ZP_07206824.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820426|gb|ABD99065.1| Cro-like protein, phage associated [Lactobacillus phage Sal2] gi|300851743|gb|EFK79438.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 63 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R+ G++Q++ + +GI++Q + YEK +++ S ++ + V PI F Sbjct: 6 LKAARVNAGLTQKEAAKKIGISYQTLSDYEKDESKIKLSMIRKMCSVYNMPIDCIF 61 >gi|88604161|ref|YP_504339.1| XRE family transcriptional regulator [Methanospirillum hungatei JF-1] gi|88189623|gb|ABD42620.1| transcriptional regulator, XRE family [Methanospirillum hungatei JF-1] Length = 70 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 RI+ R+ G++Q L G+ + + EKG HI+ +L + I FFFD Sbjct: 4 RIKEFRVRQGITQADLARKAGVRRETIVFLEKGKYNPSLRLAHHIACILNTSIEELFFFD 63 Query: 76 VS 77 Sbjct: 64 DE 65 >gi|319892586|ref|YP_004149461.1| probable transcriptional repressor [Staphylococcus pseudintermedius HKU10-03] gi|317162282|gb|ADV05825.1| probable transcriptional repressor [Staphylococcus pseudintermedius HKU10-03] Length = 103 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 3/101 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFDVS 77 I+ RR+ L ++ E++G +G+ V+K+E G + + ++ ++E L+ S+ V Sbjct: 5 IKARRLELNLTLEQVGNMVGVGKSTVRKWETGDIENMKRDKIVKLAEALKVSPSYIMGVE 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + D+ T + L + + K R K Sbjct: 65 DEKPQQNTLAAHLDGDY--TEEELAEILEYAKFVRQKHRNK 103 >gi|296270730|ref|YP_003653362.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093517|gb|ADG89469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 192 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 7 IPNP--VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +P+P ++ + +R R GM+ ++L ++ + + E+G + L I+E Sbjct: 1 MPDPETINAAIAANVRSLRGQRGMTLDELAARSKVSRGMLIQIEQGRTNPSINTLNRIAE 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNV 91 L I +V+ I V Sbjct: 61 ALGVSIGRLVEVADVPVVRIVQPSEAV 87 >gi|229918744|ref|YP_002887390.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229470173|gb|ACQ71945.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 74 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+ R ++QE+L +G+T + E G G ++ + + F Sbjct: 8 QRLVSLRKAAQLTQEQLALKIGVTQSMIAHIESGTKDPGKDNKLKLAAFFGVTVEYLF 65 >gi|169335543|ref|ZP_02862736.1| hypothetical protein ANASTE_01958 [Anaerofustis stercorihominis DSM 17244] gi|169258281|gb|EDS72247.1| hypothetical protein ANASTE_01958 [Anaerofustis stercorihominis DSM 17244] Length = 126 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D +G +I+ R ++QE L E L ++ + E G+ +V + I+++L Sbjct: 7 IDYKKLGGKIKKARQKENLTQETLAEILDLSASHLSHVENGLAKVSLPTIYSIAKILNVS 66 Query: 70 ISFF--FDVSPTVCSDISSEENNVMDFISTPD 99 + + E +++F S + Sbjct: 67 LDNLLGLEFENESLYVTIKEIKKLLEFCSITE 98 >gi|160933079|ref|ZP_02080468.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] gi|156868153|gb|EDO61525.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] Length = 152 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE + E LG++ Q + K+E G + + ++ + + + Sbjct: 1 MNLGNSLFHARKRRGLSQEDVAEKLGVSRQTISKWETGETIPDIRQCKRLAVLYQMSLDE 60 Query: 73 F--FDVSPTVCSDISSEENNVMD 93 FD++ ++ + D Sbjct: 61 LIDFDINTAEIQEMIKKSGEKAD 83 >gi|49078644|gb|AAT49805.1| PA1359 [synthetic construct] Length = 219 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 8 PNPVDI-----NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 PNP + +V +R R+ G+SQE L ++ + + E G V S L I Sbjct: 33 PNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRI 92 Query: 63 SEVLESPISFFFDVSPTVCSDIS 85 + L F D+ +D S Sbjct: 93 AAALGV---LFPDLVQAPATDRS 112 >gi|18313906|ref|NP_560573.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] gi|18161474|gb|AAL64755.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] Length = 516 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 11/106 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RI R G+S L + G++ + E+G S L +I+ L F Sbjct: 5 VGSRIAELREKRGLSLTALAKLSGVSKSTLWGIERGEVVPTVSTLWNIANALGVT---FG 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR--YFIQIDDVKVRQK 118 ++ + DI +E V + +G NR Y ++++ R+ Sbjct: 62 EL---ITYDIVVKEEGVEVRLIEREG---NREVYLMRLEGGSYRRA 101 >gi|312126546|ref|YP_003991420.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776565|gb|ADQ06051.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 145 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 17/146 (11%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + +G +I+ R G + +L G+ + + E+G + + L I++ L Sbjct: 3 KKNKIARTLGLKIKKLREEKGWTINQLALYAGVNPTSIMRAERGESELSLGNLLRIAKAL 62 Query: 67 ESPISFFFD--------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVR 116 + ++ + + + + ++ + I + L F I + V+ Sbjct: 63 KVDLNTLVEESMGQIKLGDEELVPEEKDKTPDIYEIIKKAENL----NFKGIPVNEPDVK 118 Query: 117 QKIIE---LVRSIVSSEKKYRTIEEE 139 Q I+E + + EK+ E E Sbjct: 119 QAIVEAITFAIRLKAKEKRQENKEIE 144 >gi|291521725|emb|CBK80018.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 129 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GKRIR R G+S E+L E ++ + E + L IS LE I Sbjct: 8 IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITID 64 >gi|260664376|ref|ZP_05865229.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|260562262|gb|EEX28231.1| predicted protein [Lactobacillus jensenii SJ-7A-US] Length = 80 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---ISFF 73 R++ R+ G SQ+K LG+++ + E G + + I E+L+ P I+ F Sbjct: 7 ARLKAERIARGYSQQKFARALGVSYVTYNQKENGKKPISIDQFVKILEILKIPDNEINIF 66 Query: 74 F 74 F Sbjct: 67 F 67 >gi|228950623|ref|ZP_04112758.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067839|ref|ZP_04201157.1| Transcriptional regulator Xre [Bacillus cereus F65185] gi|229077365|ref|ZP_04210032.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2] gi|229176675|ref|ZP_04304080.1| Transcriptional regulator Xre [Bacillus cereus 172560W] gi|229188360|ref|ZP_04315409.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876] gi|228595159|gb|EEK52929.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876] gi|228606842|gb|EEK64258.1| Transcriptional regulator Xre [Bacillus cereus 172560W] gi|228705944|gb|EEL58263.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2] gi|228715323|gb|EEL67181.1| Transcriptional regulator Xre [Bacillus cereus F65185] gi|228809098|gb|EEM55582.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 82 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 22 GRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 76 >gi|225019632|ref|ZP_03708824.1| hypothetical protein CLOSTMETH_03585 [Clostridium methylpentosum DSM 5476] gi|224947599|gb|EEG28808.1| hypothetical protein CLOSTMETH_03585 [Clostridium methylpentosum DSM 5476] Length = 120 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ R G+S+ +L + L I + + E + L+ + FF Sbjct: 14 GQAIKEARKAKGISRNQLADRLNIAPRYIASIENSGQHPSLQIFYELVTFLDVSVDQFF- 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN 104 P D +++ + + ++ + L Sbjct: 73 -FPVKTPDKTTQRRQLDELLNGVEETDLV 100 >gi|150398657|ref|YP_001329124.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030172|gb|ABR62289.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 197 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG R+R R ++ + L G++ + + E+G A L + L + + Sbjct: 13 LDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQLLARLCSALGTTL 72 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 S F + S ++ ++ P+ L R Sbjct: 73 SALFASGVSEASPLARRQD--QRLWRDPESGYLRRS 106 >gi|26988980|ref|NP_744405.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983798|gb|AAN67869.1|AE016418_9 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 104 Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R + G++Q +L E G + + ++E + ++VL FF Sbjct: 6 LGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVLGVKTKDFF 65 Query: 75 DVSPTVCSDIS 85 + Sbjct: 66 AEPDDEEEQRA 76 >gi|325568656|ref|ZP_08144949.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157694|gb|EGC69850.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 139 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VG+RI+ RR LG + + L LG++ + +YEKG + ++ L+ ++ L + Sbjct: 1 MEVGERIKQRRKELGYNADYLASKLGVSRSTIFRYEKGEIEKLPTEVLEKLAISLNTTPG 60 Query: 72 FFF 74 + Sbjct: 61 YLM 63 >gi|323487380|ref|ZP_08092678.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163] gi|323693858|ref|ZP_08108049.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum WAL-14673] gi|323399286|gb|EGA91686.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163] gi|323502110|gb|EGB17981.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum WAL-14673] Length = 115 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+++ R G +Q+ L E LG++ + E G ++ I ++L ++ Sbjct: 1 MTIGERLKIARKARGYTQDSLAEALGMSRGVITNIEYGRAEPQTLVIKAICDILHISQTW 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + D E++ Sbjct: 61 LMTGNGNMDIDFDLEKS 77 >gi|312967403|ref|ZP_07781618.1| helix-turn-helix family protein [Escherichia coli 2362-75] gi|312287600|gb|EFR15505.1| helix-turn-helix family protein [Escherichia coli 2362-75] Length = 255 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 5/111 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 RI G SQ +L LG++ Q VQ + G +RL +SE+ P S+F + Sbjct: 35 NRITKLLQEKGWSQAELARKLGVSAQSVQYWTTGKTFPRGNRLAQLSEISGYPQSWFLGE 94 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++ S + + L+ F D VR I++VRSI Sbjct: 95 ITSRQFSSKEKHQARTDSVVFN----VLDVEFSCGDGTHVRGDFIDVVRSI 141 >gi|257438852|ref|ZP_05614607.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii A2-165] gi|257198667|gb|EEU96951.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii A2-165] Length = 381 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G++Q +L L ++ + + K+E S L+ ++ L + Sbjct: 7 GSTIRQLREAKGLTQAELAGTLSVSAKTISKWETAKGLPDISLLEPLAAALGVSVLELMQ 66 Query: 76 VSPTVCSDISS 86 P + + ++ Sbjct: 67 GEPIINRNRAA 77 >gi|237717327|ref|ZP_04547808.1| transcriptional regulator [Bacteroides sp. D1] gi|262406092|ref|ZP_06082642.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294648160|ref|ZP_06725703.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|229443310|gb|EEO49101.1| transcriptional regulator [Bacteroides sp. D1] gi|262356967|gb|EEZ06057.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292636544|gb|EFF55019.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] Length = 191 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKALREDKSISIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D V Sbjct: 67 DDQDEVGP 74 >gi|227364951|ref|ZP_03848993.1| bacteriophage transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325682427|ref|ZP_08161944.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|227070005|gb|EEI08386.1| bacteriophage transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324978266|gb|EGC15216.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 124 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 24/112 (21%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G RI R MSQ +L + LGI + YE + L I++ + Sbjct: 13 DMSIGNRIADLRTNNHMSQFQLAKVLGIGTSTLGMYETNKRKPSPKVLNKIADYFDVSTD 72 Query: 72 FF------------------------FDVSPTVCSDISSEENNVMDFISTPD 99 + F+ P D ++ + ++ + Sbjct: 73 YLLGRKSKADQVHNATVDEALGTIMSFEGQPVTEHDKKVMKDLLESYLRNKE 124 >gi|164688807|ref|ZP_02212835.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] gi|164602283|gb|EDQ95748.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] Length = 364 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+GK I R G++Q++L +G++ V K+E + L ++ + + Sbjct: 4 INIGKNITKFRRSKGITQDELASYIGVSKSSVSKWENSITYPDIMLLPQLATLFNISLDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LMGYEPQLIKE 74 >gi|162146218|ref|YP_001600677.1| transcriptional regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|161784793|emb|CAP54335.1| putative transcriptional regulatory protein [Gluconacetobacter diazotrophicus PAl 5] Length = 83 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+SQE L E +G+ + E G L H S+ L + D Sbjct: 8 GANVRRLRRAAGLSQEALAERMGVDRAYISWIETGRQNATLLSLWHASQALGVRPATLLD 67 Query: 76 VSPTVCSDISS 86 S ++ + Sbjct: 68 ESHVAATEEAP 78 >gi|154148443|ref|YP_001405854.1| hypothetical protein CHAB381_0248 [Campylobacter hominis ATCC BAA-381] gi|153804452|gb|ABS51459.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 233 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPIS 71 + + RI+ R I G +Q++L + G++ ++ YE K + L I++ + IS Sbjct: 1 MELSNRIKQLRDIKGWTQQELADYSGVSIDSIKGYESKKTKNITTENLNKIAKAFDLNIS 60 Query: 72 FFFDVS 77 F++ Sbjct: 61 NFYNND 66 >gi|15830918|ref|NP_309691.1| hypothetical protein ECs1664 [Escherichia coli O157:H7 str. Sakai] gi|168756532|ref|ZP_02781539.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|168771061|ref|ZP_02796068.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|168782527|ref|ZP_02807534.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|168787669|ref|ZP_02812676.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|195938823|ref|ZP_03084205.1| hypothetical protein EscherichcoliO157_20767 [Escherichia coli O157:H7 str. EC4024] gi|208806950|ref|ZP_03249287.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815716|ref|ZP_03256895.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208822642|ref|ZP_03262961.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396624|ref|YP_002270109.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217328417|ref|ZP_03444499.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|261224908|ref|ZP_05939189.1| hypothetical protein EscherichiacoliO157_09974 [Escherichia coli O157:H7 str. FRIK2000] gi|261257236|ref|ZP_05949769.1| hypothetical protein EscherichiacoliO157EcO_15627 [Escherichia coli O157:H7 str. FRIK966] gi|291281508|ref|YP_003498326.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|13361128|dbj|BAB35087.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|188999971|gb|EDU68957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189356349|gb|EDU74768.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189360126|gb|EDU78545.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189372536|gb|EDU90952.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|208726751|gb|EDZ76352.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732364|gb|EDZ81052.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208738127|gb|EDZ85810.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158024|gb|ACI35457.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217318844|gb|EEC27270.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|290761381|gb|ADD55342.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|320638144|gb|EFX07905.1| hypothetical protein ECO5101_18657 [Escherichia coli O157:H7 str. G5101] gi|320643564|gb|EFX12729.1| hypothetical protein ECO9389_18000 [Escherichia coli O157:H- str. 493-89] gi|320648883|gb|EFX17507.1| hypothetical protein ECO2687_10168 [Escherichia coli O157:H- str. H 2687] gi|320654469|gb|EFX22513.1| hypothetical protein ECO7815_15353 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320664959|gb|EFX32089.1| hypothetical protein ECOSU61_14426 [Escherichia coli O157:H7 str. LSU-61] gi|326346440|gb|EGD70177.1| transcriptional regulator, XRE family [Escherichia coli O157:H7 str. 1125] Length = 194 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 4 NKKIPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K+ N + D ++ + + R ++ +L + G++ + K E+G + A+ L + Sbjct: 2 DKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRL 61 Query: 63 SEVLESPISFFF 74 + L +S F Sbjct: 62 ANALNITLSKLF 73 >gi|312868183|ref|ZP_07728385.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096288|gb|EFQ54530.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 158 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGENIKTLRKAHNLTQPEFAKIVGISRNSLSRYENGASSVSTELIDRICQKFNVS 56 >gi|260463673|ref|ZP_05811871.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|319785160|ref|YP_004144636.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259030527|gb|EEW31805.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|317171048|gb|ADV14586.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 124 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP + +GKR++ R +G++QE+ L + + + E G VGA ++ ++ + E Sbjct: 11 PNPEAVRLGKRLKDAREYVGITQEEAANHLKVRRSAISEMEAGKRGVGALEMKSLAVLYE 70 Query: 68 SPISFF 73 P S+F Sbjct: 71 RPTSWF 76 >gi|257484651|ref|ZP_05638692.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320323844|gb|EFW79928.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|330888838|gb|EGH21499.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330986306|gb|EGH84409.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011269|gb|EGH91325.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 189 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 35/135 (25%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V + +R R +SQ L E G++ + + E G V + L ++E LE S Sbjct: 14 HVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFS-- 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD------VKVRQKIIELVRSIV 127 D I P+ NR + +I++ + + ++ L R+I Sbjct: 72 -------------------DLIQAPE----NRDYSRINELAWAGTISGSKAVL-LARAIA 107 Query: 128 SSEKKYRTIEEECMV 142 E + E C+ Sbjct: 108 RRE---VELWEFCLE 119 >gi|224825809|ref|ZP_03698913.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224602033|gb|EEG08212.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 119 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 7/121 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R +Q+ L + +G+ V ++E G + +++ L + Sbjct: 1 MIIGFRIKEARKARRRTQKWLADEVGVKQSSVSQWEMGETEPTTANCSSVAQALRISFEW 60 Query: 73 FF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ T S + D +L F Q+ K RQ +++ +R + Sbjct: 61 LTTGRGEMDVTYASAVVHVAEPGQDLDDDKK--ELLALFDQLP-KKKRQILLQFMRDWAA 117 Query: 129 S 129 + Sbjct: 118 T 118 >gi|219667624|ref|YP_002458059.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537884|gb|ACL19623.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 63 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R +SQE L + ++ Q + E S ++EVL+ + F Sbjct: 3 NNIRQYRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELF 60 >gi|149189093|ref|ZP_01867381.1| Putative transcriptional regulator [Vibrio shilonii AK1] gi|148837056|gb|EDL54005.1| Putative transcriptional regulator [Vibrio shilonii AK1] Length = 100 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 15/105 (14%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQ 60 KK P P R++ R ++Q+ LG +G+ ++ YEKG + L+ Sbjct: 3 KKNPIP------SRLKSARKKAKITQKDLGVKIGMEESSASGRMNHYEKGRHVPDIGTLR 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +++ L+ P+ +FF +++++E ++ ++ + L L Sbjct: 57 RMAKELDVPLCYFF-----CDNELTAEIACAVEKMTDEERLALLE 96 >gi|170742021|ref|YP_001770676.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196295|gb|ACA18242.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R + G+SQ L GI + E G L+ I + + ++ FF Sbjct: 6 VGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEFF 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 + P ++++ Sbjct: 66 SLEPARTEKAFYAAEDLVEI 85 >gi|134298768|ref|YP_001112264.1| helix-turn-helix domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051468|gb|ABO49439.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1] Length = 255 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 32/55 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G++IR+ R G+S ++L + +GI+ + + E+G + L+ ++E L P Sbjct: 74 LGEKIRIIRNETGLSLQELADKIGISLSYLSEIERGTVYPALNTLKRVAEGLGVP 128 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R G++Q +L G+T + + E+G + L+ +SEV+ +F Sbjct: 139 LGYKLKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSPCYFI 198 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 V +S + + + P Sbjct: 199 MEPGAVDQMVSLMNPELRELLIHP 222 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR R G + + L ++ + + E+G R + ++ L + + Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVSKTQLVE 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 T E+ + I GL L +I Sbjct: 65 GEITDSGLGLGEK---IRIIRNETGLSLQELADKI 96 >gi|256962367|ref|ZP_05566538.1| predicted protein [Enterococcus faecalis Merz96] gi|256952863|gb|EEU69495.1| predicted protein [Enterococcus faecalis Merz96] Length = 308 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R +GM+Q+ L E L Q + K+E G L I L I Sbjct: 7 IGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISIDDLL 66 Query: 75 D 75 D Sbjct: 67 D 67 >gi|225377903|ref|ZP_03755124.1| hypothetical protein ROSEINA2194_03563 [Roseburia inulinivorans DSM 16841] gi|260438260|ref|ZP_05792076.1| putative transcriptional regulator [Butyrivibrio crossotus DSM 2876] gi|225210234|gb|EEG92588.1| hypothetical protein ROSEINA2194_03563 [Roseburia inulinivorans DSM 16841] gi|292809280|gb|EFF68485.1| putative transcriptional regulator [Butyrivibrio crossotus DSM 2876] Length = 107 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+RI+ R M++++L E +G++ ++K E GVN L I+E+ + + Sbjct: 9 GERIKELRAARRMTRQQLAEQIGLSVDALRKIEAGVNGAKIDTLISIAELFHITLDYL 66 >gi|110801073|ref|YP_695499.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|168211126|ref|ZP_02636751.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|110675720|gb|ABG84707.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|170710868|gb|EDT23050.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] Length = 348 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 7 IKEKRNSQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKVDLN 59 >gi|320327981|gb|EFW83986.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330875480|gb|EGH09629.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 189 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 35/135 (25%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V + +R R +SQ L E G++ + + E G V + L ++E LE S Sbjct: 14 HVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFS-- 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD------VKVRQKIIELVRSIV 127 D I P+ NR + +I++ + + ++ L R+I Sbjct: 72 -------------------DLIQAPE----NRDYSRINELAWAGTISGSKAVL-LARAIA 107 Query: 128 SSEKKYRTIEEECMV 142 E + E C+ Sbjct: 108 RRE---VELWEFCLE 119 >gi|300779705|ref|ZP_07089561.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030] gi|300533815|gb|EFK54874.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030] Length = 135 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLES 68 + R++ R + G+SQ++L + G++ QV E+ N S + ++ L Sbjct: 29 LSARLKSVRTMRGVSQQRLADLSGLSRSQVSNLERNHNNSRRSNDPNLSTIYRLAYALRV 88 Query: 69 PISFFFDVSPTVCSDI 84 P + +I Sbjct: 89 PPVLLLPGAGEEVGEI 104 >gi|258516973|ref|YP_003193195.1| helix-turn-helix domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780678|gb|ACV64572.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 383 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G +Q ++ + GI+ + E G S LQ+I+ + + F Sbjct: 6 IGANLRRIREAKGWTQSQVADLAGISRVAYRNIENGNTTPKVSTLQNIASAVGVKLQDLF 65 >gi|229111169|ref|ZP_04240726.1| Immunity repressor protein [Bacillus cereus Rock1-15] gi|228672333|gb|EEL27620.1| Immunity repressor protein [Bacillus cereus Rock1-15] Length = 142 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV I+ R M+Q+ L E I+ + E G L+ I+ L+ I+ Sbjct: 1 MNVSINIKKYRKEKKMTQKALAEKANISRSYLGDLESGRYNPSLDTLRTIASALDIDINL 60 Query: 73 FFDVSPTVCSDISSEENN 90 +D + +++ Sbjct: 61 LLTEDGATQTDNLTSKDD 78 >gi|255038048|ref|YP_003088669.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254950804|gb|ACT95504.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 79 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ IR R ++QE+LGE +G+ Q+ K E G N + + L++ I F Sbjct: 10 LGRAIRTVRKERNLTQEQLGELVGVQKAQISKLENGNNSATIDTILKVFSALKAEIQF 67 >gi|212696759|ref|ZP_03304887.1| hypothetical protein ANHYDRO_01301 [Anaerococcus hydrogenalis DSM 7454] gi|212676258|gb|EEB35865.1| hypothetical protein ANHYDRO_01301 [Anaerococcus hydrogenalis DSM 7454] Length = 82 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++GK++R R +++++L E I+ + +++ EK N S L + E L+ + Sbjct: 6 HIGKKLRKLREEKNITRKELAEKTYISEETIRRIEKEENDPRISTLYSLCENLDVDLQLL 65 Query: 74 FDVSPTVCS 82 F+ + C Sbjct: 66 FNENKKNCD 74 >gi|169334596|ref|ZP_02861789.1| hypothetical protein ANASTE_00999 [Anaerofustis stercorihominis DSM 17244] gi|169259313|gb|EDS73279.1| hypothetical protein ANASTE_00999 [Anaerofustis stercorihominis DSM 17244] Length = 117 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 29/55 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G++++ +R G++QE L E + ++ + E G +V + +I+ +L Sbjct: 8 LGEKLKQQRKKQGITQETLAEYVDLSVSHLSHIENGSTKVSLQTIVNIANILNIS 62 >gi|166219126|gb|ABY85413.1| transcriptional regulator [Streptococcus suis] Length = 195 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 17/135 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R++ G+++ L L +T Q + ++E GV ++ + + +F Sbjct: 4 GSRLEELRLLNGLTRADLARELEVTEQAIWQFETGVTLPKMKNKIAMARFFQVEVDYFDA 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDG-------------LQLNRYFIQIDDVKVRQKIIEL 122 V +S D + + + F+ I + Q I +L Sbjct: 64 VDKNGSFSLSRIAFRNADLEAKKNIHIQMVYLEKMNQMIDYLENFVSIPN----QIIYQL 119 Query: 123 VRSIVSSEKKYRTIE 137 V SI +++ ++E Sbjct: 120 VDSIEQKLQQHESLE 134 >gi|160916079|ref|ZP_02078286.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991] gi|158431803|gb|EDP10092.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991] Length = 194 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDN 60 Query: 73 FFDVSPTVCSDISSEEN 89 F +I + Sbjct: 61 FIKEDIKEMREIVEKAT 77 >gi|254245401|ref|ZP_04938722.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia PC184] gi|124870177|gb|EAY61893.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia PC184] Length = 216 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 36 VAVSLGNKIRALRQRLKLTLDEAATTAGISKPFLSQVERGRATPSITSLVRIAKALGVTM 95 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +F D S + F ++ F ++ + Sbjct: 96 QYFIDTPTEARSVCRGDALQYFQFANS------ASSFARLTN 131 >gi|83858712|ref|ZP_00952234.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] gi|83853535|gb|EAP91387.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] Length = 67 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR+ R SQ LGE +G++ Q + E + S I+E E+ I FD Sbjct: 3 NRIRVLRAERRWSQADLGERVGVSRQAINAVETSKHDPSLSLAFKIAEAFEAKIEDVFD 61 >gi|317498279|ref|ZP_07956578.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894488|gb|EFV16671.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 159 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 KRI+ R L ++QEK G +G+ V ++E G N S L I + F Sbjct: 3 KRIKKLRRELDLTQEKFGARIGVKGNTVAQWESGRNEPPDSSLAFICREFGVMDEWLRFG 62 Query: 76 VSPTVCSDISSEENNVMDFISTP 98 P + ++E +D ++ Sbjct: 63 TGPMYAPEPTTE----LDALAKK 81 >gi|312901966|ref|ZP_07761228.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311290902|gb|EFQ69458.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 69 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR R ++Q+++ E L ++ +YE G AS L +++ + + + D Sbjct: 4 KNIRSIREDNDVTQQQMAELLNVSQNTYSQYETGKIEWTASTLIKVADYFDVSVDYLLD 62 >gi|251779221|ref|ZP_04822141.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083536|gb|EES49426.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 94 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+ R G+ QE +G+ L I+ YE G S L +++ + + Sbjct: 2 LGERLAELRKDKGLKQEDIGKILRISRSTYGNYESGYAEPSVSILIDLAKFYNVSLDY 59 >gi|254454592|ref|ZP_05068029.1| DNA-binding protein [Octadecabacter antarcticus 238] gi|198268998|gb|EDY93268.1| DNA-binding protein [Octadecabacter antarcticus 238] Length = 189 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+P +G IR R G++ LG+ LG + + + E+ ++ + L+HI+ VL Sbjct: 4 APSPEIHTLGADIRALRKARGLTLSGLGKTLGRSVGWLSQVERDMSEPSITDLRHIASVL 63 Query: 67 ESPISFFF 74 + +S F Sbjct: 64 DVSVSSLF 71 >gi|169631196|ref|YP_001704845.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC 19977] gi|169243163|emb|CAM64191.1| Probable transcriptional regulatory protein [Mycobacterium abscessus] Length = 476 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGGRLRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 >gi|217958856|ref|YP_002337404.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|222095015|ref|YP_002529075.1| transcriptional regulator sinr [Bacillus cereus Q1] gi|229138068|ref|ZP_04266666.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|229172021|ref|ZP_04299586.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|217067870|gb|ACJ82120.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|221239073|gb|ACM11783.1| transcriptional regulator SinR [Bacillus cereus Q1] gi|228611364|gb|EEK68621.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|228645413|gb|EEL01647.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|324325398|gb|ADY20658.1| transcriptional regulator SinR [Bacillus thuringiensis serovar finitimus YBT-020] Length = 107 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE-ENNVMDFIST 97 T + + SE V D +S+ Sbjct: 62 LHDETTKENHLDSEWTQLVKDAMSS 86 >gi|220923328|ref|YP_002498630.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947935|gb|ACL58327.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 183 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R+ G+SQ L + G+ + E G L+ I + + ++ FF Sbjct: 6 VGARLRYVRLRHGLSQRALAKKAGVVNSTISLIESGKANPSVGALKRILDAVPIGLAEFF 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 ++P +++ Sbjct: 66 SLTPDRSEKAFYASEELVEI 85 >gi|124003437|ref|ZP_01688286.1| probable transcriptional regulator, putative [Microscilla marina ATCC 23134] gi|123991006|gb|EAY30458.1| probable transcriptional regulator, putative [Microscilla marina ATCC 23134] Length = 93 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R + QE L + +G+T Q YE + S I E + FF + Sbjct: 9 EKIKQIRKERKIKQEALAKAIGVTTGQYSHYETLKTEISLSNFLKILAYFEMSVKDFFML 68 Query: 77 SPTVCSDISSEE 88 S + +E Sbjct: 69 DSATISKENLDE 80 >gi|320106693|ref|YP_004182283.1| XRE family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925214|gb|ADV82289.1| transcriptional regulator, XRE family [Terriglobus saanensis SP1PR4] Length = 71 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R G++Q++L + +G+T Q V E I+EVL+ P+ F Sbjct: 7 NNIRNLRAEAGLTQQELADLIGVTRQTVNAIEGDKYSPTLEAAFRIAEVLKVPLESVF 64 >gi|256423770|ref|YP_003124423.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038678|gb|ACU62222.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 114 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 5/107 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I GKR+ R +SQ+++ + +G+ + +YE+ + +I+ LE + + Sbjct: 4 ITFGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIAAALEVSLDY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVR 116 + + + + +S D +L F++ D K R Sbjct: 64 LVGNTDLLLDQTILDRIMDIQKLSDQDKADAFKLLDMFLR--DAKAR 108 >gi|255531474|ref|YP_003091846.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344458|gb|ACU03784.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 109 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 11/113 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR R G SQ ++ + L I+ K E G+ + SRL I+ + E Sbjct: 4 IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLAQIANLFEVSTMDII 63 Query: 75 DVSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++ EE N + + ++ + + +K+++K+I+L I Sbjct: 64 SKEGENPQSLNFEEINGLKEKLAQREE----------EIIKLQKKVIDLYEEI 106 >gi|146319181|ref|YP_001198893.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146321385|ref|YP_001201096.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253752226|ref|YP_003025367.1| DNA-binding phage protein [Streptococcus suis SC84] gi|253754052|ref|YP_003027193.1| DNA-binding phage protein [Streptococcus suis P1/7] gi|253755986|ref|YP_003029126.1| DNA-binding phage protein [Streptococcus suis BM407] gi|145689987|gb|ABP90493.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145692191|gb|ABP92696.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251816515|emb|CAZ52151.1| putative DNA-binding phage protein [Streptococcus suis SC84] gi|251818450|emb|CAZ56279.1| putative DNA-binding phage protein [Streptococcus suis BM407] gi|251820298|emb|CAR46798.1| putative DNA-binding phage protein [Streptococcus suis P1/7] gi|292558817|gb|ADE31818.1| prophage Sa05, DNA-binding protein [Streptococcus suis GZ1] gi|319758615|gb|ADV70557.1| transcriptional regulator [Streptococcus suis JS14] Length = 173 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 31/68 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R ++QE+L + +G+ + +QK+E G + + + +++ + + Sbjct: 2 NKLKTLRKENNLTQEELAKKIGVNLRTLQKWENGESSIRTKNAEKLAKHFGVSVGYLLGY 61 Query: 77 SPTVCSDI 84 V + Sbjct: 62 EDKVKKEF 69 >gi|84500659|ref|ZP_00998908.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391612|gb|EAQ03944.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 214 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R M+ +L G++ + K E GV + + ++ L+ P+ Sbjct: 26 LEVAIGREVRSLRHRQRMTGAELAAQTGLSVGMLSKIENGVISPSLTTISALAHALKVPL 85 Query: 71 SFFFDV--SPTVCSDISSEENNVMDFISTPDG 100 F P C + + + +D T G Sbjct: 86 VQLFSGYEEPRGCMHVKAGQGVEIDRAGTRAG 117 >gi|294085034|ref|YP_003551794.1| helix-turn-helix domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664609|gb|ADE39710.1| helix-turn-helix domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 131 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G RI R +G+S L +G+ + +E + ++L ++ +L Sbjct: 16 IDSTLGGRIFKCREQVGLSLNMLAHLVGVNPSTLASWENDSSEPRVNKLVSMAGILGVSP 75 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 ++F S IS Sbjct: 76 TYFIAEEGHSGSATKPARGRTGKLISN 102 >gi|269468586|gb|EEZ80235.1| hypothetical protein Sup05_0706 [uncultured SUP05 cluster bacterium] Length = 131 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV---NRVGASRLQHISEVLESP 69 ++ RI+ R + G+SQ++L + +G++ + +YE + L +++VL Sbjct: 2 KSIAIRIKQSRELKGLSQKELADKIGVSSSAISQYESTSYFHSEPSVKNLIKLTKVLNVS 61 Query: 70 ISFF 73 + Sbjct: 62 FEWL 65 >gi|238925959|ref|YP_002939477.1| hypothetical protein EUBREC_3617 [Eubacterium rectale ATCC 33656] gi|238877636|gb|ACR77343.1| Hypothetical protein EUBREC_3617 [Eubacterium rectale ATCC 33656] Length = 183 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R M+Q++L E +G+T Q + +YEKGV + +++ L+ +D Sbjct: 6 KLKKIRTFRKMTQKELSEKIGLTDQHRIVQYEKGVRVPKKDLVDKMAKALDVNPYTLYDT 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 + S++ + +F P L L Sbjct: 66 AGRDASEMMELLFWLDEF--NPSALHL 90 >gi|237733314|ref|ZP_04563795.1| predicted protein [Mollicutes bacterium D7] gi|229383695|gb|EEO33786.1| predicted protein [Coprobacillus sp. D7] Length = 297 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++ +R R G SQE+L E L ++ Q V K+E L +S++ E I Sbjct: 5 IKMSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTI 64 Query: 71 SFFFDVSPTVCSDISSEE 88 T + + + Sbjct: 65 DDLLKNDLTQHNPTAKQA 82 >gi|227893879|ref|ZP_04011684.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] gi|227864368|gb|EEJ71789.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] Length = 65 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R +SQ L + +G+ Q + E +++ L + ++ F Sbjct: 2 NRVKKYRKQKNLSQMALAKKIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNSLF 59 >gi|126727106|ref|ZP_01742943.1| transcriptional regulator, putative [Rhodobacterales bacterium HTCC2150] gi|126703534|gb|EBA02630.1| transcriptional regulator, putative [Rhodobacterales bacterium HTCC2150] Length = 424 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 11/92 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR+ LG+ Q L +GI+ + E R+G L ++ L Sbjct: 8 GSRIRERRIDLGLRQGDLALKVGISPAYLNLIEHNKRRIGGKLLVSLAATLAVEPIALTQ 67 Query: 76 VSPTV-----------CSDISSEENNVMDFIS 96 I EE NV F+S Sbjct: 68 GGAAAVVAGLKNAASNAPQIDVEEANVDQFLS 99 >gi|67078349|ref|YP_245967.1| transcriptional regulator [Bacillus cereus E33L] gi|66970655|gb|AAY60629.1| transcriptional regulator [Bacillus cereus E33L] Length = 87 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ GM+Q +L + ++ Q + EKG I + L ++ F Sbjct: 27 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLF 83 >gi|73670284|ref|YP_306299.1| MerR family transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72397446|gb|AAZ71719.1| transcriptional regulator, MerR family [Methanosarcina barkeri str. Fusaro] Length = 192 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 18/125 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +IR R M+ E+L E + + +Q+ E G + L I+ L + F Sbjct: 7 VGSKIRQLREAREMTIEELAEASQSSEELIQQLENGALVPSLTPLLKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDI--SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D P I + +NV+ F + K R+ +E S+ S+K Sbjct: 67 DDMPQSGPVIVRAGLSDNVVRFSGKTE--------------KPRKSALEFY-SLA-SDKA 110 Query: 133 YRTIE 137 R +E Sbjct: 111 DRNME 115 >gi|329964525|ref|ZP_08301579.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328524925|gb|EGF51977.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 127 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG+R++L RM ++QE++GE L ++ K E G + +RL I+ +L Sbjct: 1 METDLKKIVGQRLQLLRMEKNLTQEQMGEQLNLSTSAYCKIEYGETDLTLTRLNKIANIL 60 Query: 67 ESPISFFF 74 + F Sbjct: 61 NMSAAELF 68 >gi|325833460|ref|ZP_08165909.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485384|gb|EGC87853.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 71 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + NVG+R+R R ++QE+L G+ + K E G ++ ++ L Sbjct: 1 MTHATRKNVGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGL 60 Query: 67 ESPISFFFDV 76 + F+ Sbjct: 61 GVTLGQLFEG 70 >gi|317403434|gb|EFV83946.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 225 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 31/76 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD+ +G+++R R G S + + G++ + + E+G++ L ++ + Sbjct: 29 VDMWLGQQLRQLRKQHGRSLADVAQACGMSLGLLSQIERGLSSASVKTLHQLAREFGVSV 88 Query: 71 SFFFDVSPTVCSDISS 86 + + + Sbjct: 89 NTLLRNAEHTEGEDGG 104 >gi|258626503|ref|ZP_05721343.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] gi|258581214|gb|EEW06123.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] Length = 180 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKTLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S ++ Sbjct: 69 FANDPQLLSSERSFPDDP 86 >gi|226526961|ref|YP_002790980.1| transcriptional regulator [Lactobacillus brevis] gi|226442553|dbj|BAH56423.1| transcriptional regulator [Lactobacillus brevis] Length = 65 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +IR R +SQ +L E +G+ Q V E +I+ VL++ + F+ Sbjct: 3 NKIREYRKKKNLSQAELAEKVGLARQTVSLLENKSYNPSLKVCLNIANVLDTTLDSLFN 61 >gi|226225799|ref|YP_002759905.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226088990|dbj|BAH37435.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 145 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 10/128 (7%) Query: 11 VDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D+ V GK +R R G SQE + +G+ + E+G + + I+ L Sbjct: 1 MDLFVRFGKTVRRLRTNAGFSQETFADLVGMHRNYIGTVERGETNISIENIHRIARGLRI 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDF-----ISTPDGLQLNR-YFIQIDDVKVRQKIIEL 122 I+ F D + + L R ++ + RQ I E Sbjct: 61 TIAGLFQEMEGSAEDTPRSADTAGSTRTPGDQHERERTDLLRPALDRVAEA--RQAIEEA 118 Query: 123 VRSIVSSE 130 + ++ E Sbjct: 119 AKHLLQLE 126 >gi|194430884|ref|ZP_03063221.1| repressor protein C2 [Escherichia coli B171] gi|194411072|gb|EDX27557.1| repressor protein C2 [Escherichia coli B171] gi|324014358|gb|EGB83577.1| helix-turn-helix protein [Escherichia coli MS 60-1] Length = 207 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R + RR+ LGM+Q ++ G++ Q ++ E G R L +++ L+ + Sbjct: 1 MSLAARFKARRLELGMTQVEVANSAGVSQQSIESIESGRTR-KPRNLLDLAKALKCSPDW 59 Query: 73 FFDV 76 + Sbjct: 60 LLNG 63 >gi|168209872|ref|ZP_02635497.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] gi|170712005|gb|EDT24187.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] Length = 141 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R +SQE+L + L I+ Q + K+E G L + ++ + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLD 59 >gi|119899299|ref|YP_934512.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72] gi|119671712|emb|CAL95625.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72] Length = 200 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ G++ ++ E GI+ + K E G G L I+ L +S F Sbjct: 16 VGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTLARIARSLGVAMSALF 75 >gi|332358032|gb|EGJ35865.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 62 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|329890393|ref|ZP_08268736.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845694|gb|EGF95258.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 476 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 21/124 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R L +SQ + LG++ + E+ V A L ++E + Sbjct: 9 LFLGGRLKRLRRELDLSQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDV---- 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP----------DGLQLNRYFIQIDDVKVRQKIIEL 122 D+ S + E + + + P + +QL D V ++ L Sbjct: 65 --DLRNLGQSGGPASEAELAEVFADPLFQGLAVPRHEIMQLAE-----DQPAVADAVLRL 117 Query: 123 VRSI 126 R+ Sbjct: 118 YRAF 121 >gi|311894296|dbj|BAJ26704.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 208 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R+ G+S +L G+ + E G L ++ L P+S Sbjct: 15 VGLRLRELRVARGLSLSELARRSGVGKATLSGLESGTRNPTLETLYALTTALGLPLSAAL 74 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 75 QAPEQAVREAAT 86 >gi|258423246|ref|ZP_05686138.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257846575|gb|EEV70597.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 189 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L I E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMICELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|206967661|ref|ZP_03228617.1| DNA-binding protein [Bacillus cereus AH1134] gi|218236090|ref|YP_002365489.1| DNA-binding protein [Bacillus cereus B4264] gi|228919545|ref|ZP_04082909.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228951193|ref|ZP_04113308.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957113|ref|ZP_04118883.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042556|ref|ZP_04190299.1| Transcriptional regulator [Bacillus cereus AH676] gi|229068379|ref|ZP_04201682.1| Transcriptional regulator [Bacillus cereus F65185] gi|229078006|ref|ZP_04210615.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|229149032|ref|ZP_04277277.1| Transcriptional regulator [Bacillus cereus m1550] gi|229177222|ref|ZP_04304609.1| Transcriptional regulator [Bacillus cereus 172560W] gi|229188901|ref|ZP_04315934.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|206736581|gb|EDZ53728.1| DNA-binding protein [Bacillus cereus AH1134] gi|218164047|gb|ACK64039.1| DNA-binding protein [Bacillus cereus B4264] gi|228594606|gb|EEK52392.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228606228|gb|EEK63662.1| Transcriptional regulator [Bacillus cereus 172560W] gi|228634572|gb|EEK91156.1| Transcriptional regulator [Bacillus cereus m1550] gi|228705344|gb|EEL57721.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|228714840|gb|EEL66712.1| Transcriptional regulator [Bacillus cereus F65185] gi|228726775|gb|EEL77989.1| Transcriptional regulator [Bacillus cereus AH676] gi|228802560|gb|EEM49407.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808490|gb|EEM54994.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840188|gb|EEM85465.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 67 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|146319128|ref|YP_001198840.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33] gi|146321334|ref|YP_001201045.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33] gi|145689934|gb|ABP90440.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33] gi|145692140|gb|ABP92645.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33] gi|292558766|gb|ADE31767.1| hypothetical protein SSGZ1_1311 [Streptococcus suis GZ1] Length = 178 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N G++I+ R G++QE+ L +T Q V +E N L +S V + Sbjct: 21 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLD 79 >gi|47526538|ref|YP_017887.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47569194|ref|ZP_00239881.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|65318632|ref|ZP_00391591.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|222094987|ref|YP_002529047.1| transcriptional regulator [Bacillus cereus Q1] gi|47501686|gb|AAT30362.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|47554166|gb|EAL12530.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|221239045|gb|ACM11755.1| probable transcriptional regulator [Bacillus cereus Q1] Length = 65 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 3 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 56 >gi|332798978|ref|YP_004460477.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696713|gb|AEE91170.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 85 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ + R G++Q L LG++ + YE G G + I++ I + F Sbjct: 6 NRLAMLRNSKGLTQRDLANELGVSPSTIAMYEIGERTPGLKMAKIIADFFGVGIEYIF 63 >gi|297560394|ref|YP_003679368.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844842|gb|ADH66862.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 490 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R+R R G++ LGE +G Q+ E G S L ++ L + Sbjct: 19 VTFGQRLRHLRRARGLTLSDLGERVGRAPSQLSLLENGKREPKLSLLTSLASALGVSVEE 78 Query: 73 FFDVSPTV 80 P Sbjct: 79 LLSKQPPS 86 >gi|296110846|ref|YP_003621227.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154] gi|295832377|gb|ADG40258.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154] Length = 296 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ L R +SQE L + L ++ Q V K+E G ++L ++E+L ++F Sbjct: 7 SQLSLLRQKKNLSQEALAQKLYVSRQSVSKWEHGDAEPDIAKLISLAEILAVDLNFLLSG 66 >gi|227329669|ref|ZP_03833693.1| putative transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 98 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 + I +GKR+++ R+ G++Q +LG G+ ++ YE V+ + + VL Sbjct: 1 MSIMIGKRLKIARVNAGLTQTELGVRAGLDEESASSRISSYENEVHAPDFGLVCKFAAVL 60 Query: 67 ESPISFFFDVSPTVCS 82 + P ++F+ V + + Sbjct: 61 DIPEAYFYAVDDDLAT 76 >gi|187777166|ref|ZP_02993639.1| hypothetical protein CLOSPO_00711 [Clostridium sporogenes ATCC 15579] gi|187774094|gb|EDU37896.1| hypothetical protein CLOSPO_00711 [Clostridium sporogenes ATCC 15579] Length = 393 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRL 59 M+ NK N G+R++ R+ G++ +L E L + Q V YE N + Sbjct: 1 MMRNKTAFN------GERLKAARIYRGLTVAELAEKLELQRQTVSMYENNKLNNPELVTI 54 Query: 60 QHISEVLESPISFFFDVSPTVCSDISS 86 +S VL P FF + + S+ Sbjct: 55 AKMSTVLGFPKKFFLENDKIGIKNGST 81 >gi|146311635|ref|YP_001176709.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145318511|gb|ABP60658.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 175 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S KL + G++ + + E+ + S L I+ L P Sbjct: 3 ITQHLATTLKTERQARGWSLSKLADETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPF 62 Query: 71 SFF 73 S F Sbjct: 63 SAF 65 >gi|90413760|ref|ZP_01221748.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90325229|gb|EAS41726.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 126 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FDV 76 +IR R ++Q + + LG+ Q E G S L I+++ P+ +F ++ Sbjct: 16 KIREARERKDITQVAMAKALGLARQTYLDLESGKTEPRISTLVSIADITGRPLIWFIYED 75 Query: 77 SPTVCSDISSEENNVMDFIS 96 + S+ ++ ++D + Sbjct: 76 EGPISSEDKNDIQVLLDLFA 95 >gi|332142476|ref|YP_004428214.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552498|gb|AEA99216.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 175 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 8/122 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R G+S +L GI + + E+G + +++ L+ P F Sbjct: 9 LGRHLKKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVP----F 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S E + I G+ + R++ + + ++ Sbjct: 65 GQLVQPLSTSVGENGVEVRLIEQGQGVPNVDAYWMSVAPNTRRE----AEAHATETQETI 120 Query: 135 TI 136 T+ Sbjct: 121 TV 122 >gi|312126461|ref|YP_003991335.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776480|gb|ADQ05966.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 124 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 12/91 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VDI V +I R+ +SQ++L + LGI+ V K E G L I++ L Sbjct: 33 VDIAV--KIIQYRIKNNLSQKELAQKLGISQAMVSKLESGDYNPTVKMLYEIAKKLG--- 87 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 F++ EEN ++ + + L Sbjct: 88 ---FELEIEFREKTECEEN----WLESSEEL 111 >gi|300173806|ref|YP_003772972.1| helix-turn-helix domain-containing protein [Leuconostoc gasicomitatum LMG 18811] gi|299888185|emb|CBL92153.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG 18811] Length = 176 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 33/62 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ +Q+ + + LG+T Q VQ+YE ++ + + +++ + P+S+ + Sbjct: 7 SRLKSERLKKKKTQKDIADFLGMTKQAVQRYESSLSIPKLATWEKLADYFDVPVSYLMGI 66 Query: 77 SP 78 Sbjct: 67 DE 68 >gi|320012637|gb|ADW07487.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 206 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + +D V KRIR R+ G S E+L I + + E G R+ +L Sbjct: 1 MSPVTQNDDELDSLVRKRIRALRVAQGWSLEELAGRAHIGQSTLSRIENGRRRLALDQLV 60 Query: 61 HISEVLESPISFFFDVSPT 79 ++ L++ + + + Sbjct: 61 TLARALDTSLDQLVETASD 79 >gi|302540026|ref|ZP_07292368.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302457644|gb|EFL20737.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 207 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 9 NPVD----INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 NP D + R R R G+S ++ + +GI+ + K E + L ++ Sbjct: 13 NPDDKALERVIAVRAREYRQAAGLSVGEMAQRVGISKAMLSKIENAQTACSLTTLSRLAR 72 Query: 65 VLESPISFFFDVSPTVCSDI 84 L+ P++ F + Sbjct: 73 GLDVPVTALFRGMDDEREAV 92 >gi|255007620|ref|ZP_05279746.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12] Length = 93 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +IR RR +LG++Q+ L + I+ + K E G + +L I EVL +S Sbjct: 25 KQIGIQIRQRRKMLGINQQTLADLAQISINTITKIENGEININFQKLYAILEVLGLELS 83 >gi|9858108|gb|AAG00996.1|AF287346_1 regulator SinR [Bacillus thuringiensis] Length = 107 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDDTTKETNLDSE 75 >gi|332202990|gb|EGJ17058.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 164 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 RI+ R ++Q +L I ++ +Q++E G + + Q +++ I Sbjct: 2 NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLLGY 61 Query: 75 -DVSPTVCSDI-SSEENNVMDFISTPDGLQLNRYFIQIDDV 113 D+ SDI + ++++ F+ + + FI+ +D Sbjct: 62 SDLIADTDSDIKAMAYSHLLTFVDEKQIKEFEKEFIRANDN 102 >gi|323490301|ref|ZP_08095516.1| AnsR [Planococcus donghaensis MPA1U2] gi|323395971|gb|EGA88802.1| AnsR [Planococcus donghaensis MPA1U2] Length = 118 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + KRI+ R G+S E+L + +G V YE G +V L+ +++ E + Sbjct: 2 KQLSKRIKDLREAKGLSTEELADAIGFAKSTVWAYESGKKQVSVVHLERLADYFEISVDS 61 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 D + + + D+ Sbjct: 62 LLDRDERTINVDLQNTSFLNDY 83 >gi|312794333|ref|YP_004027256.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181473|gb|ADQ41643.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 145 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 17/144 (11%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + +G +I+ R G + +LG G+ + + E+G + + L I++ L Sbjct: 3 KKNKIAKALGLKIKKLREEKGWTINQLGLYAGVNPTSIMRAERGESELSLGNLLRIAKAL 62 Query: 67 ESPISFFFD--------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVR 116 + ++ + + + + ++ + I + L F I D V+ Sbjct: 63 KVDLNTLVEESMEQIVLGDEELVPNEKDKTPDIYEIIKKAENL----NFKGIPVTDPDVK 118 Query: 117 QKIIE---LVRSIVSSEKKYRTIE 137 Q I+E + + EK E Sbjct: 119 QAIVEAITFAIRLKAKEKTQEDNE 142 >gi|307292241|ref|ZP_07572105.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496747|gb|EFM66300.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 418 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE---SP 69 ++G+ IR+ R G +Q L E +GI+ + K EKG R+ A +L + + L+ P Sbjct: 7 RDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRRLSAEKLNLVLDSLQEEIVP 66 Query: 70 IS 71 ++ Sbjct: 67 VN 68 >gi|253995592|ref|YP_003047656.1| XRE family transcriptional regulator [Methylotenera mobilis JLW8] gi|253982271|gb|ACT47129.1| transcriptional regulator, XRE family [Methylotenera mobilis JLW8] Length = 114 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + +G+ I RR+ G++Q+++ E LGI ++ V + E+GV RL Sbjct: 2 MTKSKK---YLAEQIGQSIAKRRLAAGLTQDQVSEKLGIGYEAVSRMERGVTIPTVIRLA 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 ++E+ I S D + + +++ +++ D Sbjct: 59 ELAEIFGCGIQELLIESSDRPDDQAEQIKSMLAKLNSED 97 >gi|261414728|ref|YP_003248411.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371184|gb|ACX73929.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 130 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++L R G +Q++L + GIT QQV E+G +G ++ L + F Sbjct: 74 LKLLRTTFGYTQQQLADKAGITKQQVSAMERGKEPIGRKMAHRLANALGTSYKNLF 129 >gi|163755625|ref|ZP_02162744.1| helix-turn-helix family protein [Kordia algicida OT-1] gi|161324538|gb|EDP95868.1| helix-turn-helix family protein [Kordia algicida OT-1] Length = 66 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R IL ++Q++L + +G++ Q + EKG +S + + PI+ FF Sbjct: 3 NRIKIERAILDITQDELAKKIGVSRQTINSIEKGRYVPSTVLALKLSNLFDKPINEFF 60 >gi|160878327|ref|YP_001557295.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426993|gb|ABX40556.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 141 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KR++ R +QE + L I Q YE G N L ++ + P++ Sbjct: 6 IAKRLKELRKSFEYTQEFVASYLNIGRQAYSHYETGRNAPTTDTLYKLASLYHIPVNDLL 65 Query: 75 DVSPTVCSD--ISSEENNVMDFIST 97 + + + E NN+ + + Sbjct: 66 KLLSPHPQETYTTPESNNIASNMLS 90 >gi|57234348|ref|YP_181599.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] gi|57224796|gb|AAW39853.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] Length = 222 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +++G++IR R G + E LG G++ Q ++K EKG + + + +S S Sbjct: 10 MSIGEKIREFRKARGWTPEYLGSRSGLSGQYIRKLEKGERQSITLTTASKLSSAFGIEPS 69 Query: 72 FFFDVS----PTVCSDISSEENNVMDFISTPD 99 S P DI +E +V + T + Sbjct: 70 KLISESEATLPRQIEDILTEIRSVFQRLETVE 101 >gi|329848824|ref|ZP_08263852.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843887|gb|EGF93456.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 75 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R RM G SQ +LGE LG++ Q V E G + ++ + P+ F P Sbjct: 5 VRDLRMQRGWSQGELGERLGVSRQAVNAIEVGKHDPSLELTFKLAYLFNLPVEEIF-HPP 63 Query: 79 TVCSDISSEENN 90 DI ++ + Sbjct: 64 FTAEDIRHDQRD 75 >gi|325567650|ref|ZP_08144317.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325159083|gb|EGC71229.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 172 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G+SQ + E L I+ Q + K+E G L +S++ + I Sbjct: 5 EQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDELLRE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + I + + D + L L + Sbjct: 65 NEALKERIETNNQEIND---KKEKLSLLQ 90 >gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 185 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 2/97 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V KKI +P +G R++ R GM+Q + G +G+T + K E G Sbjct: 85 VQTKKIIDPH--AIGARLKAIRKDEGMTQGEFGALVGLTHTGISKIETGHRTPEIKTALK 142 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 I L + + + + + +F+ Sbjct: 143 IKRSLGKTLDWIYFGDEEIIPKKNRLRAKQSNFLHES 179 >gi|293980676|ref|YP_003543434.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677693|dbj|BAI99208.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 77 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 28/62 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+ R RR+ L MSQ +L E G+T + + E G L I+ L + Sbjct: 14 MLVGRNCRERRVQLEMSQTELSERSGVTASYLSRIENGRGNPTLELLDSIAGALGCHVVD 73 Query: 73 FF 74 F Sbjct: 74 LF 75 >gi|282879243|ref|ZP_06287993.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella buccalis ATCC 35310] gi|281298636|gb|EFA91055.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella buccalis ATCC 35310] Length = 112 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R+ ++QE+LGE +G+ Q+ + EKG + + + + + L P Sbjct: 44 LGEAIKKARIEQNLTQEELGERIGVKRAQISRLEKGYS-ISIPTMSRVFKALGVP 97 >gi|317054283|ref|YP_004118308.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952278|gb|ADU71752.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 192 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K + ++I +G++++ R G S L E G++ + K E+G + A+ L Sbjct: 1 MSDEKSSKEDSINIRIGQKVKAEREKRGWSLTDLAENSGVSRAMIHKIERGESSPTATLL 60 Query: 60 QHISEVLESPIS 71 ++ + +S Sbjct: 61 ARLAGSFDMSMS 72 >gi|257866249|ref|ZP_05645902.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257873237|ref|ZP_05652890.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257875884|ref|ZP_05655537.1| DNA binding protein [Enterococcus casseliflavus EC20] gi|257800207|gb|EEV29235.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257807401|gb|EEV36223.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257810050|gb|EEV38870.1| DNA binding protein [Enterococcus casseliflavus EC20] Length = 172 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G+SQ + E L I+ Q + K+E G L +S++ + I Sbjct: 5 EQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDELLRE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + I + + D + L L + Sbjct: 65 NEALKERIETNNQEIND---KKEKLSLLQ 90 >gi|298345880|ref|YP_003718567.1| hypothetical protein HMPREF0573_10754 [Mobiluncus curtisii ATCC 43063] gi|304390415|ref|ZP_07372368.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235941|gb|ADI67073.1| hypothetical protein HMPREF0573_10754 [Mobiluncus curtisii ATCC 43063] gi|304326171|gb|EFL93416.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 80 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 10 PVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PVD G+ IR+RR+I +QE L E G++ +++ E G V ++ + Sbjct: 9 PVDTPEKFGQLIRMRRVIFDYTQENLAEKAGVSRMAIKRLEAGNPNVRLDTALKAAQAVG 68 Query: 68 SPISFFFDVSP 78 P+ + +P Sbjct: 69 VPLPTILEGNP 79 >gi|187779176|ref|ZP_02995649.1| hypothetical protein CLOSPO_02771 [Clostridium sporogenes ATCC 15579] gi|187772801|gb|EDU36603.1| hypothetical protein CLOSPO_02771 [Clostridium sporogenes ATCC 15579] Length = 155 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q + K+E ++ + +S++ + Sbjct: 1 MSLGEKLLYLRKKSGLSQEDVAEKLSVSRQTISKWETDQTVPELNKAKLLSQLYNVSYDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|167032796|ref|YP_001668027.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859284|gb|ABY97691.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 184 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 9/89 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ +L + +G + + + E+GV+R + L ISE L ++F+ + Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLDK 73 Query: 79 TVCSDISSEENN---------VMDFISTP 98 D + + + D +++P Sbjct: 74 PRELDWVTRPHERRTLHLAGGITDVLASP 102 >gi|89096956|ref|ZP_01169847.1| dna-binding protein [Bacillus sp. NRRL B-14911] gi|89088336|gb|EAR67446.1| dna-binding protein [Bacillus sp. NRRL B-14911] Length = 69 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R G+SQE+L + G++ Q + E + ++E L + F Sbjct: 3 NQIKEVRKSSGLSQEELAKACGVSRQTINAIENNKYDPSLALAFQLAESLGMTVDQLF 60 >gi|332880985|ref|ZP_08448655.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681159|gb|EGJ54086.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 117 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ ++ R + G +QE++ + +GI YE G V L+ +S + Sbjct: 4 INQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILEKLSNLFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 F+ + ++I + + D Sbjct: 64 FILFEDNVQADNEILATAFRISDLEDD 90 >gi|332298496|ref|YP_004440418.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181599|gb|AEE17287.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 106 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG IR R G +Q + E LG+T + E G + ++ +SE+ + P + Sbjct: 6 IIVGDNIRRLRREYGWTQAYVAENLGVTAPFLTMIESGQRGMSLDLIEKLSELFDVPAAS 65 Query: 73 FFDVSPTVCSDISSEE 88 FF + +S +E Sbjct: 66 FFVQYSDTSAGVSRQE 81 >gi|239628519|ref|ZP_04671550.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239518665|gb|EEQ58531.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 123 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 13/116 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI+ +R++ R LG++ G + +T + EKG+ + L+ I Sbjct: 1 MDIH--ERLKYLRTQLGLTTRAFGASINMTGGAITNMEKGLRNITDRTLKDICREYNVNP 58 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + D V D S + D QL R + ++D K R ELV+SI Sbjct: 59 EWLTDGKEPVFLDTVSSLDVEEDVK------QLARQYSLLND-KDR----ELVKSI 103 >gi|218232808|ref|YP_002367302.1| transcriptional regulator [Bacillus cereus B4264] gi|229127969|ref|ZP_04256953.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|218160765|gb|ACK60757.1| transcriptional regulator [Bacillus cereus B4264] gi|228655531|gb|EEL11385.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] Length = 116 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + Sbjct: 6 RIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFNVPVNYLY 62 >gi|77919689|ref|YP_357504.1| transcriptional regulator Cro/CI family protein [Pelobacter carbinolicus DSM 2380] gi|77545772|gb|ABA89334.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G++++ RMI ++QE+LG +T + + E + L+ I +V + Sbjct: 4 NLNIGEKLKRLRMINSLTQEELGNRADLTKGYISQLENDTACPSIATLKDILDVFGVSMQ 63 Query: 72 FFFDVSPTVCSDISSEEN 89 FF ++ Sbjct: 64 EFFTDPVDTEVVFGTDAR 81 >gi|148548701|ref|YP_001268803.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512759|gb|ABQ79619.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 197 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R M+ ++L E G+ + K E V +L + L I+ F Sbjct: 13 VGQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNVDIAQLF 72 Query: 75 DVSPTVCSDIS 85 S TV + + Sbjct: 73 RASGTVSAPVP 83 >gi|323487870|ref|ZP_08093128.1| immunity repressor protein [Planococcus donghaensis MPA1U2] gi|323398604|gb|EGA91392.1| immunity repressor protein [Planococcus donghaensis MPA1U2] Length = 114 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KR++L R M+QE+L LG T + YE G + L +I+ +L S + Sbjct: 2 LSKRLKLVRQKRKMTQEELARTLGTTKGSISNYENGRSSPSVEVLVNIANILNSSTDYL 60 >gi|295105624|emb|CBL03168.1| Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3] Length = 167 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + VG RI+ R + GM+Q++LG +G + ++ +YE L+ I+EVL+ Sbjct: 1 MAVGDRIKRARNLRGMTQKELGIAIGFEEKSADIRIAQYESNTRTPKEELLRKIAEVLDV 60 Query: 69 PISFFFDVSPTVCSDI 84 ++ + D+ Sbjct: 61 NYRSLYEPTLYAAEDV 76 >gi|291531647|emb|CBK97232.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 136 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFF 73 +++ R G++Q++ + LG++ + + YEKG + + ++E+L I++ Sbjct: 6 KVKKERRAKGLTQQQFADMLGVSLRTITNYEKGESYPKQREIYGKMAEILGVDINYL 62 >gi|257090410|ref|ZP_05584771.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|256999222|gb|EEU85742.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|315034707|gb|EFT46639.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0027] gi|315578682|gb|EFU90873.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] Length = 125 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R+ +Q+++ + LGIT +E N L ++ + + F Sbjct: 2 LGNKLKQLRISKNKTQQQVADYLGITRAAYSHFENNRNDPDKETLVKLAILFDVTTDFLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + T E + + + G+ Y +I + R++I +L+ S Sbjct: 62 GRNHTPEWASKDEVIELDKILKSNPGMT---YGSEIMTDEDREQINDLIAS 109 >gi|256848433|ref|ZP_05553875.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256714700|gb|EEU29679.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 211 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 29/54 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++RR G++Q + + L +T Q + +E+G + + L IS+ + I Sbjct: 6 QIKMRRKKRGLTQSVVAKKLYVTRQTISNWEQGKSYPDLNTLVRISDFYQISID 59 >gi|324992002|gb|EGC23924.1| transcriptional regulator [Streptococcus sanguinis SK405] Length = 71 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWD 61 Query: 77 SPTVCSD 83 S D Sbjct: 62 SQLTDED 68 >gi|197284861|ref|YP_002150733.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227355259|ref|ZP_03839661.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194682348|emb|CAR42162.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227164632|gb|EEI49499.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 104 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 ++ + +I+ RR L ++ ++G LGI+ Q + E G ++ L I+ +L Sbjct: 4 INSTIAHKIKQRRKELRLTGIEMGNRLGISQQHYSRIENGNIKITVELLFSIAFILN 60 >gi|218231166|ref|YP_002366047.1| DNA-binding protein [Bacillus cereus B4264] gi|228938478|ref|ZP_04101087.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951741|ref|ZP_04113842.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228971357|ref|ZP_04131984.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977969|ref|ZP_04138349.1| Helix-turn-helix repressor protein [Bacillus thuringiensis Bt407] gi|228984435|ref|ZP_04144613.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229010654|ref|ZP_04167854.1| Helix-turn-helix repressor protein [Bacillus mycoides DSM 2048] gi|229029033|ref|ZP_04185132.1| Helix-turn-helix repressor protein [Bacillus cereus AH1271] gi|229108820|ref|ZP_04238425.1| Helix-turn-helix repressor protein [Bacillus cereus Rock1-15] gi|229132161|ref|ZP_04261019.1| Helix-turn-helix repressor protein [Bacillus cereus BDRD-ST196] gi|229149564|ref|ZP_04277796.1| Helix-turn-helix repressor protein [Bacillus cereus m1550] gi|229154928|ref|ZP_04283042.1| Helix-turn-helix repressor protein [Bacillus cereus ATCC 4342] gi|229172007|ref|ZP_04299572.1| Helix-turn-helix repressor protein [Bacillus cereus MM3] gi|229177773|ref|ZP_04305147.1| Helix-turn-helix repressor protein [Bacillus cereus 172560W] gi|218159123|gb|ACK59115.1| DNA-binding protein [Bacillus cereus B4264] gi|228605737|gb|EEK63184.1| Helix-turn-helix repressor protein [Bacillus cereus 172560W] gi|228611350|gb|EEK68607.1| Helix-turn-helix repressor protein [Bacillus cereus MM3] gi|228628486|gb|EEK85199.1| Helix-turn-helix repressor protein [Bacillus cereus ATCC 4342] gi|228633910|gb|EEK90507.1| Helix-turn-helix repressor protein [Bacillus cereus m1550] gi|228651308|gb|EEL07285.1| Helix-turn-helix repressor protein [Bacillus cereus BDRD-ST196] gi|228674589|gb|EEL29828.1| Helix-turn-helix repressor protein [Bacillus cereus Rock1-15] gi|228732313|gb|EEL83196.1| Helix-turn-helix repressor protein [Bacillus cereus AH1271] gi|228750619|gb|EEM00445.1| Helix-turn-helix repressor protein [Bacillus mycoides DSM 2048] gi|228775301|gb|EEM23689.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228781757|gb|EEM29955.1| Helix-turn-helix repressor protein [Bacillus thuringiensis Bt407] gi|228788393|gb|EEM36345.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228807936|gb|EEM54454.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821215|gb|EEM67231.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938985|gb|AEA14881.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 69 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|194466453|ref|ZP_03072440.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194453489|gb|EDX42386.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 220 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 34/83 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +++ R G +Q +L + L ++ Q + +E G LQ+++++ I Sbjct: 6 IASQLKRLRKSRGWTQTQLADKLSVSKQTISNWETGTKVPRMGSLQNLADLFHVKIGEIT 65 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + S S N++ + Sbjct: 66 NASIIKEETQSHLPTNIIYPLGD 88 >gi|254932545|ref|ZP_05265904.1| LcmR protein [Listeria monocytogenes HPB2262] gi|12275199|emb|CAC22274.1| LcmR protein [Listeria monocytogenes] gi|293584102|gb|EFF96134.1| LcmR protein [Listeria monocytogenes HPB2262] gi|332310736|gb|EGJ23831.1| Transcriptional repressor [Listeria monocytogenes str. Scott A] Length = 68 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 + IR R ++Q+++ + L ++ +YE G A+ L I++ + + + D Sbjct: 4 RNIRSIREDNDITQQQMAKLLNVSQNTYSQYETGKIEWTATTLIKIADYFDVSVDYLLD 62 >gi|15596556|ref|NP_250050.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9947301|gb|AAG04748.1|AE004565_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 218 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 8 PNPVDI-----NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 PNP + +V +R R+ G+SQE L ++ + + E G V S L I Sbjct: 33 PNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRI 92 Query: 63 SEVLESPISFFFDVSPTVCSDIS 85 + L F D+ +D S Sbjct: 93 AAALGV---LFPDLVQAPATDRS 112 >gi|42780455|ref|NP_977702.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|49184196|ref|YP_027448.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|52144076|ref|YP_082752.1| transcriptional regulator [Bacillus cereus E33L] gi|75761307|ref|ZP_00741285.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118476827|ref|YP_893978.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165870447|ref|ZP_02215102.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167634466|ref|ZP_02392787.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167639256|ref|ZP_02397528.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686708|ref|ZP_02877928.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170706264|ref|ZP_02896725.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177651467|ref|ZP_02934256.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190568777|ref|ZP_03021681.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196035321|ref|ZP_03102726.1| DNA-binding protein [Bacillus cereus W] gi|196040762|ref|ZP_03108061.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196046481|ref|ZP_03113706.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206977826|ref|ZP_03238715.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217958841|ref|YP_002337389.1| DNA-binding protein [Bacillus cereus AH187] gi|218896296|ref|YP_002444707.1| DNA-binding protein [Bacillus cereus G9842] gi|218902459|ref|YP_002450293.1| DNA-binding protein [Bacillus cereus AH820] gi|225863209|ref|YP_002748587.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227815895|ref|YP_002815904.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228899941|ref|ZP_04064182.1| Helix-turn-helix repressor protein [Bacillus thuringiensis IBL 4222] gi|228906995|ref|ZP_04070862.1| Helix-turn-helix repressor protein [Bacillus thuringiensis IBL 200] gi|228913933|ref|ZP_04077558.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926397|ref|ZP_04089469.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932638|ref|ZP_04095513.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944966|ref|ZP_04107327.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228964309|ref|ZP_04125428.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar sotto str. T04001] gi|229090316|ref|ZP_04221560.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-42] gi|229120884|ref|ZP_04250126.1| Helix-turn-helix repressor protein [Bacillus cereus 95/8201] gi|229138054|ref|ZP_04266652.1| Helix-turn-helix repressor protein [Bacillus cereus BDRD-ST26] gi|229183559|ref|ZP_04310783.1| Helix-turn-helix repressor protein [Bacillus cereus BGSC 6E1] gi|229195562|ref|ZP_04322329.1| Helix-turn-helix repressor protein [Bacillus cereus m1293] gi|229602614|ref|YP_002865785.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254682576|ref|ZP_05146437.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254726237|ref|ZP_05188019.1| transcriptional regulator [Bacillus anthracis str. A1055] gi|254733994|ref|ZP_05191708.1| transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254740319|ref|ZP_05198010.1| transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254753706|ref|ZP_05205741.1| transcriptional regulator [Bacillus anthracis str. Vollum] gi|254758802|ref|ZP_05210829.1| transcriptional regulator [Bacillus anthracis str. Australia 94] gi|270000577|ref|NP_843743.2| DNA-binding protein [Bacillus anthracis str. Ames] gi|301052901|ref|YP_003791112.1| putative transcriptional regulator [Bacillus anthracis CI] gi|42736374|gb|AAS40310.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|49178123|gb|AAT53499.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|51977545|gb|AAU19095.1| probable transcriptional regulator [Bacillus cereus E33L] gi|74491199|gb|EAO54437.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118416052|gb|ABK84471.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|164713942|gb|EDR19464.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167512695|gb|EDR88069.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167530354|gb|EDR93080.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128798|gb|EDS97664.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669231|gb|EDT19974.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172082745|gb|EDT67808.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190560193|gb|EDV14174.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195991998|gb|EDX55961.1| DNA-binding protein [Bacillus cereus W] gi|196022665|gb|EDX61347.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196028552|gb|EDX67160.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206743923|gb|EDZ55341.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217064238|gb|ACJ78488.1| DNA-binding protein [Bacillus cereus AH187] gi|218536514|gb|ACK88912.1| DNA-binding protein [Bacillus cereus AH820] gi|218542381|gb|ACK94775.1| DNA-binding protein [Bacillus cereus G9842] gi|225786808|gb|ACO27025.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227007839|gb|ACP17582.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228587939|gb|EEK45990.1| Helix-turn-helix repressor protein [Bacillus cereus m1293] gi|228599969|gb|EEK57565.1| Helix-turn-helix repressor protein [Bacillus cereus BGSC 6E1] gi|228645399|gb|EEL01633.1| Helix-turn-helix repressor protein [Bacillus cereus BDRD-ST26] gi|228662544|gb|EEL18142.1| Helix-turn-helix repressor protein [Bacillus cereus 95/8201] gi|228693010|gb|EEL46727.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-42] gi|228795406|gb|EEM42894.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228814635|gb|EEM60895.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827010|gb|EEM72769.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833221|gb|EEM78786.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845872|gb|EEM90898.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228852743|gb|EEM97530.1| Helix-turn-helix repressor protein [Bacillus thuringiensis IBL 200] gi|228859720|gb|EEN04139.1| Helix-turn-helix repressor protein [Bacillus thuringiensis IBL 4222] gi|229267022|gb|ACQ48659.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|269850308|gb|AAP25229.2| DNA-binding protein [Bacillus anthracis str. Ames] gi|300375070|gb|ADK03974.1| probable transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324325377|gb|ADY20637.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 69 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|262404323|ref|ZP_06080878.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586] gi|262349355|gb|EEY98493.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586] Length = 181 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKVLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S ++ Sbjct: 69 FANDPQLLSSERSFPDDP 86 >gi|239621498|ref|ZP_04664529.1| helix-turn-helix domain-containing protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515959|gb|EEQ55826.1| helix-turn-helix domain-containing protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 380 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R G+S+ +L E LG+T + + YE + +S+ ++EVL S FF V Sbjct: 9 RIRCARETAGLSKVQLAESLGVTTRTIANYE--EDGAPSSKGYALAEVLGVRPS-FFSVL 65 Query: 78 PTV--CSDISSEE 88 P D+SSE+ Sbjct: 66 PDEPPIEDLSSEQ 78 >gi|219847619|ref|YP_002462052.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541878|gb|ACL23616.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 779 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +R RR+ L ++Q +LG G++ ++K E R + ++ L P Sbjct: 13 VRRRRLALDLTQAELGRRAGVSAAAIRKIEADERRPSCELAELLASALGVP 63 >gi|187922165|ref|YP_001893807.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713359|gb|ACD14583.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 109 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLE 67 D +R++ R G++QE+LG GI +V +YEKG + Q ++ L Sbjct: 9 DAVFPRRLKQARQRSGLTQEQLGIQAGIDEFSASTRVNQYEKGKHTPAIQTSQRLARALL 68 Query: 68 SPISFFFDVSPTVCS 82 P F ++ + S Sbjct: 69 VPTGFLYEDDDLLAS 83 >gi|146299807|ref|YP_001194398.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154225|gb|ABQ05079.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 136 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 17/138 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI--- 70 ++G++I R + M QE L + LG Q V E + +L +++ L + Sbjct: 9 HIGRKISRIRELRDMKQEALAQALGTNQQAVSIIENSET-IDEEKLVEVAKALGVTVEAI 67 Query: 71 -SFFFDVSPTVCSDISSEENNVMDFIS--TPDGLQ-LNRYFIQIDDVKVRQKIIELVRSI 126 +F + + + + +N+ ++F + T + L L F ++ K L + Sbjct: 68 KNFSDEAAINYFNSFTDTKNSQVNFGNHCTFNPLDKLVEAF---EENKK------LYERL 118 Query: 127 VSSEKKYRTIEEECMVEQ 144 + SEK+ ++ E+ + ++ Sbjct: 119 LESEKEKKSYLEKLLKDK 136 >gi|103486719|ref|YP_616280.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976796|gb|ABF52947.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 261 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+++R R+ MSQ L I+ + + E G +R A LQ I++ LE P Sbjct: 6 VGEQLREWRVRRRMSQMDLALESEISTRHLSFIETGRSRPSALMLQRIADCLEVP 60 >gi|312890063|ref|ZP_07749607.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297595|gb|EFQ74720.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 135 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 4/68 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++K P + ++G++I R + G+ QE L LG++ + V + E+ + L+ Sbjct: 1 MTTSEK---PTNQHIGRKISRIRELRGIKQEDLATQLGVSQKTVSRMEQSEV-IEDDVLE 56 Query: 61 HISEVLES 68 I+++L Sbjct: 57 SIAKILGV 64 >gi|312977312|ref|ZP_07789060.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|310895743|gb|EFQ44809.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 69 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R ++QE+L E +G+ + + +YE+G + L +++VL+ + Sbjct: 10 RLKRTRKNKNLTQEQLAEAVGLGVRTIGRYEQGSSFPNKRVLHELAKVLKVKTDWL 65 >gi|331659971|ref|ZP_08360909.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206] gi|315296978|gb|EFU56258.1| helix-turn-helix protein [Escherichia coli MS 16-3] gi|331053186|gb|EGI25219.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206] Length = 370 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG--VNRVGASRLQHISEVLESPISFFF 74 +R+R+ R G++Q L E +T + + YEK + + + ++ IS VL PI FF Sbjct: 5 ERLRIARERRGLTQRALAEATELTSKTISNYEKAGIFDAIASDTMERISAVLGYPIEFFL 64 Query: 75 D 75 D Sbjct: 65 D 65 >gi|229018544|ref|ZP_04175403.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273] gi|229024800|ref|ZP_04181236.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272] gi|228736511|gb|EEL87070.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272] gi|228742756|gb|EEL92897.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273] Length = 374 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 +P + + Sbjct: 64 LISYTPQMEQE 74 >gi|206562215|ref|YP_002232978.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] gi|198038255|emb|CAR54209.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] Length = 126 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 12/109 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+RL R LGM+Q + G+ YEKG S L I++ L + + Sbjct: 10 RLRLERKRLGMNQTEFAAAGGVQQHAQVNYEKGARLPDVSYLVGIAD-LGVDVQYLL--- 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + V +++ + L L F ++ ++ R+ ++ LV +I Sbjct: 66 ------TGRTSDPVTLALTSDEEL-LLAGFRELK-LRERRGVLALVAAI 106 >gi|194017594|ref|ZP_03056205.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194010866|gb|EDW20437.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 71 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + RI++ R +Q+ L E LG+T Q V E G + I+ E + Sbjct: 1 MEIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYD 60 Query: 73 FF 74 F Sbjct: 61 VF 62 >gi|218895211|ref|YP_002443622.1| DNA-binding protein [Bacillus cereus G9842] gi|228898828|ref|ZP_04063111.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222] gi|228905871|ref|ZP_04069769.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200] gi|228937377|ref|ZP_04100024.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228963175|ref|ZP_04124345.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|218540820|gb|ACK93214.1| DNA-binding protein [Bacillus cereus G9842] gi|228796560|gb|EEM43998.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228822335|gb|EEM68316.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853811|gb|EEM98570.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200] gi|228860853|gb|EEN05230.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222] gi|326937867|gb|AEA13763.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSID 62 >gi|218892536|ref|YP_002441405.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234475|ref|ZP_04927798.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719] gi|254239730|ref|ZP_04933052.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192] gi|126166406|gb|EAZ51917.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719] gi|126193108|gb|EAZ57171.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192] gi|218772764|emb|CAW28549.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 216 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 8 PNPVDI-----NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 PNP + +V +R R+ G+SQE L ++ + + E G V S L I Sbjct: 33 PNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRI 92 Query: 63 SEVLESPISFFFDVSPTVCSDIS 85 + L F D+ +D S Sbjct: 93 AAALGV---LFPDLVQAPATDRS 112 >gi|89054537|ref|YP_509988.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864086|gb|ABD54963.1| transcriptional regulator, XRE family with cupin sensor [Jannaschia sp. CCS1] Length = 205 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 3/82 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +P +G IR RR L ++ + L + G++ + + E+G L Sbjct: 1 MARPKSNNDPA---LGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLA 57 Query: 61 HISEVLESPISFFFDVSPTVCS 82 I++ L + +F S Sbjct: 58 QIAQGLSVELEYFIATPKPADS 79 >gi|319937843|ref|ZP_08012245.1| DNA-binding protein [Coprobacillus sp. 29_1] gi|319807073|gb|EFW03689.1| DNA-binding protein [Coprobacillus sp. 29_1] Length = 194 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + +I+ R+ +SQE+L + + +T Q + +E G N + + +S + + Sbjct: 1 MKISSQIKKYRLESSLSQEELADKIFVTRQTISNWENGKNYPDINSIVLLSTLFGISLD 59 >gi|254171970|ref|ZP_04878646.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4] gi|214033866|gb|EEB74692.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4] Length = 191 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IP P+D +V IR R LG++QE+L G+T + K E G S I + L Sbjct: 3 IPRPIDPSV---IRKIRKELGITQEELARKAGVTQAYIAKLESGRVDPRLSTFNRILQAL 59 >gi|218897578|ref|YP_002445989.1| putative DNA-binding protein [Bacillus cereus G9842] gi|228906186|ref|ZP_04070074.1| transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229110034|ref|ZP_04239611.1| transcriptional regulator [Bacillus cereus Rock1-15] gi|218543081|gb|ACK95475.1| putative DNA-binding protein [Bacillus cereus G9842] gi|228673387|gb|EEL28654.1| transcriptional regulator [Bacillus cereus Rock1-15] gi|228853443|gb|EEM98212.1| transcriptional regulator [Bacillus thuringiensis IBL 200] Length = 117 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ ++Q++L + +G++ V Y +G G LQ I+ L+ + + Sbjct: 5 ERLKSLIEKKSITQQQLADAIGVSHVSVYNYVEGKKAPGTRTLQKIANYLKVTTDYLLGL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S + D+++ E D T + ++ + + + + R+K +E + V+ EK + Sbjct: 65 SDS--PDLTAGE----DLQLTKEAHEILQIINDLPEEQ-RKKALEQLEMFVNYEKSKGNM 117 >gi|160940816|ref|ZP_02088158.1| hypothetical protein CLOBOL_05710 [Clostridium bolteae ATCC BAA-613] gi|158436336|gb|EDP14103.1| hypothetical protein CLOBOL_05710 [Clostridium bolteae ATCC BAA-613] Length = 131 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+R R G+SQE+ G+ LG+T V K E G ++ + L+ I + Sbjct: 6 ERLRELRKKCGLSQEEFGKKLGVTKTAVSKMELGTYQITDTMLKLICSEFNVNEKWL 62 >gi|160876037|ref|YP_001555353.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160861559|gb|ABX50093.1| transcriptional regulator, XRE family [Shewanella baltica OS195] Length = 204 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R+R R LGM+Q +L + + +QK E+G + ++ +++ L++ F Sbjct: 1 MDIAERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTK-NPRNIEALAKALQTTPEF 59 Query: 73 F-FDVSPTVCSDISSEENNVMDFIS 96 F V + + + N + IS Sbjct: 60 LRFGVGDMDNATVVASAGNYLPLIS 84 >gi|26988905|ref|NP_744330.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983715|gb|AAN67794.1|AE016410_10 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313499699|gb|ADR61065.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 184 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 9/89 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ +L + +G + + + E+GV+R + L ISE L ++F+ + Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLDK 73 Query: 79 TVCSDISSEENN---------VMDFISTP 98 D + + + D +++P Sbjct: 74 PRELDWVTRPHERRTLHLAGGITDVLASP 102 >gi|327467239|gb|EGF12743.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 71 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWD 61 Query: 77 SPTVCSD 83 D Sbjct: 62 PQLTDED 68 >gi|319778353|ref|YP_004129266.1| Putative phage repressor [Taylorella equigenitalis MCE9] gi|317108377|gb|ADU91123.1| Putative phage repressor [Taylorella equigenitalis MCE9] Length = 110 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 7/97 (7%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ +G R+++ R+ +SQ L + G++ + E G NR L +++ L Sbjct: 2 NGLNATLGDRVKIARINSKLSQIDLAKKTGLSQGTIAHIENGRNR-DTKHLMDLAKALSV 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + + + ++ IS + LQLN Sbjct: 61 RAEWLY------YGEGNVKDTWPFRRISQNEYLQLNE 91 >gi|313902341|ref|ZP_07835745.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467389|gb|EFR62899.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] Length = 435 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR LGM+QE+L L + + E LQ ++ L P+++F Sbjct: 2 IGDRIRARRRELGMTQEQLAAGL-FDRSYISRIEANEVVPPLPTLQLLAGRLGKPVAYFL 60 Query: 75 DVSPT 79 Sbjct: 61 GDEDA 65 >gi|300812901|ref|ZP_07093295.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496127|gb|EFK31255.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 122 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK +R R GMSQ++L LG++ Q + +E G ++ I+ + + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKTVEKIANIFGVSRNSIL 65 Query: 75 DVSP-TVCSDISSEENNVMDF 94 P + E+ V+D Sbjct: 66 AGLPVEMLEQEGQEDRRVVDL 86 >gi|229191966|ref|ZP_04318936.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] gi|228591517|gb|EEK49366.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] Length = 144 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I R +SQ +L + LG + ++ YE+G L+ I++ E + Sbjct: 2 LGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 D + T ++ N +S + + R Sbjct: 62 DRTQTKEMVSNNSSN-----LSIKEERDIAR 87 >gi|196043612|ref|ZP_03110850.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225864505|ref|YP_002749883.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184749|ref|ZP_04311948.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] gi|196025921|gb|EDX64590.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225786797|gb|ACO27014.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228598763|gb|EEK56384.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] Length = 66 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RI + R G +QE+L + +G++ Q + EK I+ V E I+ FD Sbjct: 4 NRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDVFD 62 >gi|152988204|ref|YP_001349378.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150963362|gb|ABR85387.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 195 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 8 PNPVDI-----NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 PNP + +V +R R+ G+SQE L ++ + + E G V S L I Sbjct: 12 PNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRI 71 Query: 63 SEVLESPISFFFDVSPTVCSDIS 85 + L F D+ +D S Sbjct: 72 AAALGV---LFPDLVQAAATDRS 91 >gi|149921943|ref|ZP_01910386.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817205|gb|EDM76683.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 128 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 12 DIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D + GK ++ RM GM+QE+L E G++ +++ E L + + + Sbjct: 13 DRHRFGKHVKSLRMARGMTQEQLAERAGLSADTIRRLEHAGFSPSLDTLFKLCLGFDLLL 72 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S FF D + E +++ P+ +++ Sbjct: 73 STFFISYELGERDEARELIDIVSGRRDPEDIEMA 106 >gi|126734314|ref|ZP_01750061.1| hypothetical protein RCCS2_09144 [Roseobacter sp. CCS2] gi|126717180|gb|EBA14044.1| hypothetical protein RCCS2_09144 [Roseobacter sp. CCS2] Length = 151 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 50/111 (45%), Gaps = 1/111 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ +RI+ R+ G++ + LG++ QV + E + A RL +++V + Sbjct: 3 HLYERIKDARIRAGLTVNEAASRLGVSRVQVWRMENKAETISAERLFVLADVYGIDPAVL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F S+ N + + ++ + ++ R + V + ++E++R Sbjct: 63 FKGINATSQSTSALYNMIGEIVTLVEA-EVQRLDAKPPPRVVGEAVVEILR 112 >gi|117927278|ref|YP_871829.1| XRE family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647741|gb|ABK51843.1| transcriptional regulator, XRE family [Acidothermus cellulolyticus 11B] Length = 233 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 8/123 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ P N+G IR +R + MS +L G++ + + E+G+ R A LQ Sbjct: 1 MRKTGRMATPF--NIGDFIREQRRLAQMSLRQLARIAGVSNPYLSQVERGLRRPSAEILQ 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ-----LNRYFIQIDDVKV 115 I+ L + V + + +++ V ++ P L+ L + Sbjct: 59 QIARGLRISAEALY-VRAGILDERTADGAVVDAVLADPHLLERQKQTLLEIYDAFRKENS 117 Query: 116 RQK 118 R+ Sbjct: 118 RRA 120 >gi|147673117|ref|YP_001218249.1| hypothetical protein VC0395_A2349 [Vibrio cholerae O395] gi|262166988|ref|ZP_06034706.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] gi|146315000|gb|ABQ19539.1| conserved domain protein [Vibrio cholerae O395] gi|227011827|gb|ACP08037.1| hypothetical protein VC395_0008 [Vibrio cholerae O395] gi|262024572|gb|EEY43255.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] Length = 69 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VGKRI R G++Q+KL I V + E+G + +L I++ L + Sbjct: 9 VGKRIAKMRKSKGLTQDKLALLAEIDRSYVGRIERGEVNITVEKLYQIADTLGCDV 64 >gi|320108099|ref|YP_004183689.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926620|gb|ADV83695.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 365 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+RL R G+S L + +T Q + KYE+G + + L +S+ L +S+ Sbjct: 2 IADRVRLARAKAGLSLRDLASEMNDKVTAQAIGKYERGEDIPSSGVLMALSKALGVSLSY 61 Query: 73 FFDVSPTVCSDIS 85 D S + Sbjct: 62 LLDTQGIELSGVE 74 >gi|302561948|ref|ZP_07314290.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302479566|gb|EFL42659.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 191 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG R+R R ++ L E GI+ + + E G+ + L I++ Sbjct: 2 TTDDVLAEVGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRKPSLELLLPIAQAH 61 Query: 67 ESPISFFFDVSPTVCSDISSEEN 89 + P+ P I + E Sbjct: 62 QVPLDELVGAPPVGDPRIRASEP 84 >gi|296122389|ref|YP_003630167.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296014729|gb|ADG67968.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 82 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PN + + ++ R GMSQ KL E G +F V ++E G + + ++E L Sbjct: 2 KPNELPEVFSRNLKAARQRAGMSQRKLAEITGCSFASVCRWETGRESPNLTTIVKLAEGL 61 Query: 67 ESPI 70 + P Sbjct: 62 QVPP 65 >gi|260892046|ref|YP_003238143.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864187|gb|ACX51293.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 81 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R+ G++Q ++ +G+T E+G I++VL + F P Sbjct: 5 LRKARLRAGLTQSEVARLVGLTRASYTNIERGHKNPSVVTALRIAQVLNRSVEELFSDEP 64 Query: 79 TVCSDISSEENNVMD 93 E N MD Sbjct: 65 PAGQAAKREANTTMD 79 >gi|271502279|ref|YP_003335305.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270345834|gb|ACZ78599.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 87 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 11/86 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R++ G+SQE+LG GI ++ +YE+G++ + ++ VL P +F Sbjct: 5 RLKAARLMAGLSQERLGILAGIDEATASARMNQYERGIHTPDFELARRLAAVLHVPACYF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 + V + ++ F T + Sbjct: 65 YTVEDDLAE-------MILSFYDTKE 83 >gi|241896164|ref|ZP_04783460.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] gi|241870583|gb|EER74334.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] Length = 140 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + +I+ RR LG+SQE+ + L I+ Q + +E L IS + + + Sbjct: 11 MELSNKIKKRRKELGISQEEAAKKLYISRQTLSNWENDKTLPDIDHLIDISNLYDLSLD 69 >gi|225389221|ref|ZP_03758945.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme DSM 15981] gi|225044715|gb|EEG54961.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme DSM 15981] Length = 156 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GK I R ++Q +LG+ LG+T + + ++E G + LQ + VL+ I+ Sbjct: 4 VQTGKFIAELRKEKSLTQAQLGDLLGVTNKTISRWENGNYMPDLAVLQSLCAVLDVNINE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 +D + +N + +S ++ R + ID Sbjct: 64 MISGRRLDEADFRQQADNNL-LLSLDQARRMRREYKLID 101 >gi|26988969|ref|NP_744394.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983786|gb|AAN67858.1|AE016417_6 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 197 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R M+ ++L E G+ + K E V +L + L I+ F Sbjct: 13 VGQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNVDIAQLF 72 Query: 75 DVSPTVCSDIS 85 S TV + + Sbjct: 73 RASGTVSAPVP 83 >gi|33599736|ref|NP_887296.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] gi|33567333|emb|CAE31246.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] Length = 201 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+ IR R +S + L G+ + + E+ + L I + L+ P+S Sbjct: 7 RLVGQAIRRIRKEKKISLQTLAARSGVATGMLSQIERDLGNPSLKTLARIRQALDVPLSA 66 Query: 73 FF 74 F Sbjct: 67 LF 68 >gi|326803357|ref|YP_004321175.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651652|gb|AEA01835.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 73 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R++ R G+SQ+ L + +G++ + E G A + L+ F+F Sbjct: 9 NRLKTIRKEKGLSQQALADMIGVSRNSISSIETGQFNPTAKLALILCIALDCQFENMFYF 68 Query: 75 DVS 77 + + Sbjct: 69 EGN 71 >gi|320321186|gb|EFW77327.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 121 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS + Sbjct: 14 FVGAKIKALRKLSGMSQAVLAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 73 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 D+ T + + + +P+ L+ F+ Sbjct: 74 LPGGQDILRTRLISLRQAIADKAIEVDSPESLEEILAFM 112 >gi|319652450|ref|ZP_08006566.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317395912|gb|EFV76634.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R G S +L IT + + E+G+ L+ +++ L+ P Sbjct: 34 NIDIGKKVEKFRKEKGYSSRELARIAEITPSMLSQIERGIANPSIQTLKVLAKALDVPTF 93 Query: 72 FF 73 F Sbjct: 94 SF 95 >gi|326204880|ref|ZP_08194733.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984929|gb|EGD45772.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 133 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 43/102 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ R + G SQ+ + + LG + + + KYE+G + + ++ + Sbjct: 4 LSERVKSLRNVKGQSQKDVAKALGKSREAISKYERGTRNLDPDAIILFAKYFNVSSDYML 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + S + + + N+ FI ++ VR Sbjct: 64 GITDYIEEMASGKRTPYSPELYAFEKYLNNQAFIPYLELAVR 105 >gi|237668382|ref|ZP_04528366.1| transcriptional regulator, Cro/CI family [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656730|gb|EEP54286.1| transcriptional regulator, Cro/CI family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 149 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 8/95 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFDVS 77 I+ RR+ LG++ E+LG+ +G+ V+K+E G + + + +S+ L+ S Sbjct: 7 IKSRRLELGLTYEELGKKIGVGKSTVRKWETGLIENIKRDNIIALSKALDISPSIIMGWD 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 T +++S + ++L F +++ Sbjct: 67 DTNSNELSETHLSESQ-------IELLNIFNKLNQ 94 >gi|291302743|ref|YP_003514021.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571963|gb|ADD44928.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 194 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R ++ +L E GI+ + + E G R L +++V P+ Sbjct: 14 VGPRLRELRRQRNVTLARLAEATGISESTLSRLESGARRPNLELLLPLAKVYGVPLD 70 >gi|228907010|ref|ZP_04070876.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] gi|228852624|gb|EEM97412.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] Length = 107 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDEKTKETNLDSE 75 >gi|169334830|ref|ZP_02862023.1| hypothetical protein ANASTE_01236 [Anaerofustis stercorihominis DSM 17244] gi|169257568|gb|EDS71534.1| hypothetical protein ANASTE_01236 [Anaerofustis stercorihominis DSM 17244] Length = 113 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+R++ +R+ ++QE+L E + ++ + E G + + +I+ VL I Sbjct: 9 GERLKRQRIKQKLTQEQLAEAVDLSVSHLSHIENGNTKTSLQTVLNIANVLNISID 64 >gi|167463701|ref|ZP_02328790.1| hypothetical phagelike protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384406|ref|ZP_08058092.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150764|gb|EFX44224.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 217 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G+ I+L R G++Q++L LG+ T+ + K+E G N ++ +SE + + Sbjct: 5 GEIIKLLREQRGLTQQQLANILGLKTYTTITKWESGDNFPKGKDIKRLSEFFKVSSDY 62 >gi|154495860|ref|ZP_02034556.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] gi|150275058|gb|EDN02106.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] Length = 253 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 5/110 (4%) Query: 9 NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N +D G + R ++Q++L E L ++ + V K+E+G++ L +++ L Sbjct: 2 NDIDKERFGGFLLQLRREKNLTQKELAERLFVSDKAVSKWERGLSLPDVGLLLPMADCLG 61 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++ T + + EE + LQL Q + R+ Sbjct: 62 VTVTELLRGERTAAAQLPVEEVEAL----VKSTLQLTEEERQAQKTRRRK 107 >gi|325262228|ref|ZP_08128966.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033682|gb|EGB94959.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 643 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R + G +Q ++ E L I+ YE G L+ ISEVLE + F +P + Sbjct: 13 RKLKGYTQAQMAEKLEISRSTYTNYEIGNRSPDLETLERISEVLECSLDELFGKTPVRTA 72 Query: 83 DISSEENNVMDFISTPD 99 D+ SE +S+ + Sbjct: 73 DMVSETPVPYR-VSSKE 88 >gi|319936820|ref|ZP_08011232.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808088|gb|EFW04660.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 220 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 R ++QE+L E L ++ Q + K+E GV L +S + I F Sbjct: 8 YYRKKNMLTQEELAEKLCVSRQTITKWENGVITPSLEYLIDLSHIFGITIDHFIKDDD 65 >gi|296137789|ref|YP_003645032.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296025923|gb|ADG76693.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 377 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV--NRVGASRLQHISEVLESPISF 72 +G+RI+ R+ GMSQ+ L + + + +QK E + S L+ +SE L P+S Sbjct: 6 LGERIKAWRLRRGMSQQDLADRMSRSKSWIQKLEGSERHSDPRLSVLREVSEALGVPLSI 65 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPD 99 EE+ +STP+ Sbjct: 66 LIRNDQEPDRSAGRNLEQIEESIACAPLSTPE 97 >gi|218288780|ref|ZP_03493043.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218241138|gb|EED08314.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 167 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+RI R G++Q KL E ++ + YE + L I+E L ++ Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGVEMA 66 >gi|196042830|ref|ZP_03110069.1| DNA-binding protein [Bacillus cereus 03BB108] gi|229185561|ref|ZP_04312741.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1] gi|196026314|gb|EDX64982.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228597956|gb|EEK55596.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1] Length = 374 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSE 87 P + + E Sbjct: 64 LISYKPQMEQEDIKE 78 >gi|148272408|ref|YP_001221969.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830338|emb|CAN01272.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 209 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V +RIR R G S + L ++ + + E G R+ +L I++ LE+ Sbjct: 6 DLDALVRQRIRSLREARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIAQALETS 65 Query: 70 ISFFFDVSPTVCSDISSEENN 90 + + I + ++ Sbjct: 66 LDALIESGDDADVVIRPQADS 86 >gi|323693418|ref|ZP_08107631.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] gi|323502526|gb|EGB18375.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] Length = 180 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 17/113 (15%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ V K IR R +S ++L G++ + + E+G S L IS ++ P Sbjct: 1 MNLIVAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVP- 59 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL------NRYFIQIDDVKVRQ 117 FD ++ N+ + T + L R + D + R+ Sbjct: 60 ---FDA-------LTVRPENLYQIVKTSEIQPLLEDNGKVRNYPVFPDDENRR 102 >gi|295402355|ref|ZP_06812310.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975628|gb|EFG51251.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 67 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+ G++Q+++ E L ++ Q ++ E G R A L ++++ IS FF Sbjct: 8 KALRVNSGLTQKEVAEYLNLSLTQYKRRENGKTRWYADELYRLAKLYNVDISVFF 62 >gi|293385315|ref|ZP_06631128.1| DNA-binding protein [Enterococcus faecalis R712] gi|293386573|ref|ZP_06631156.1| DNA-binding protein [Enterococcus faecalis S613] gi|312908107|ref|ZP_07767087.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312979000|ref|ZP_07790720.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|291077421|gb|EFE14785.1| DNA-binding protein [Enterococcus faecalis R712] gi|291083978|gb|EFE20941.1| DNA-binding protein [Enterococcus faecalis S613] gi|310625918|gb|EFQ09201.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311288179|gb|EFQ66735.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 320 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R +GM+Q+ L E L Q + K+E G L I L I Sbjct: 19 IGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISIDDLL 78 Query: 75 D 75 D Sbjct: 79 D 79 >gi|256396383|ref|YP_003117947.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362609|gb|ACU76106.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 189 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 1/77 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEV 65 P+ +G RIR R+ G+S L + + E G L I+ Sbjct: 5 TPSDFATQIGARIRRLRLERGVSLSALARDAAVGKATLSGLEDGSRGNPTIETLYAIAGR 64 Query: 66 LESPISFFFDVSPTVCS 82 L PI P Sbjct: 65 LGVPIGALLPDPPHPGE 81 >gi|258406641|ref|YP_003199382.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798868|gb|ACV69804.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 76 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ RR LG+SQEKL + G + E+G L I++ LE+ +S Sbjct: 8 LGQEIKSRRKQLGLSQEKLADKCGFDRTYISMVERGKRNPSLLNLLKIAKGLEASVSELT 67 Query: 75 DVSPTVCSD 83 +V S+ Sbjct: 68 EVINGANSE 76 >gi|222085057|ref|YP_002543586.1| hypothetical protein Arad_1139 [Agrobacterium radiobacter K84] gi|221722505|gb|ACM25661.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 207 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + G+ +R R G S ++L + G++ + + E G + S L I+ L+ Sbjct: 19 DEISSLTGQNLRRLRTRRGYSLDRLAKISGVSRAMLGQVETGKSSPTISILWKIAAALDV 78 Query: 69 P 69 P Sbjct: 79 P 79 >gi|218133018|ref|ZP_03461822.1| hypothetical protein BACPEC_00879 [Bacteroides pectinophilus ATCC 43243] gi|238925712|ref|YP_002939229.1| hypothetical protein EUBREC_3369 [Eubacterium rectale ATCC 33656] gi|260439193|ref|ZP_05793009.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|217991891|gb|EEC57895.1| hypothetical protein BACPEC_00879 [Bacteroides pectinophilus ATCC 43243] gi|238877388|gb|ACR77095.1| Hypothetical protein EUBREC_3369 [Eubacterium rectale ATCC 33656] gi|291524650|emb|CBK90237.1| Helix-turn-helix [Eubacterium rectale DSM 17629] gi|292808363|gb|EFF67568.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|295093967|emb|CBK83058.1| Helix-turn-helix. [Coprococcus sp. ART55/1] Length = 206 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ LG++Q + E +G+T +Q+YE G + +SE L + Sbjct: 8 KLIGSRAKQRRLELGVNQPYIAEKMGVTASTIQRYEAGTIDNTKKLVLDGLSEALHVSVE 67 Query: 72 FFFDVSPTVCSDISSE 87 + + + SD++ + Sbjct: 68 WLKGETEEMTSDVTDK 83 >gi|295837554|ref|ZP_06824487.1| transcriptional regulator [Streptomyces sp. SPB74] gi|197698364|gb|EDY45297.1| transcriptional regulator [Streptomyces sp. SPB74] Length = 226 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D V KR+R R+ G S E+L ++ + + E G R+ L ++ L++ Sbjct: 6 DDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDT 65 Query: 69 PISFFFDVSPT 79 + + + Sbjct: 66 SLDQLVETASD 76 >gi|153941561|ref|YP_001393012.1| hypothetical protein CLI_A0008 [Clostridium botulinum F str. Langeland] gi|152937441|gb|ABS42938.1| conserved domain protein [Clostridium botulinum F str. Langeland] gi|295320987|gb|ADG01364.1| hypothetical protein CBF_P0008 [Clostridium botulinum F str. 230613] Length = 64 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++++ R+ +SQ++L E +GIT Q + E G I +VL ++ F Sbjct: 4 RKMKIARVECDLSQQQLAEKVGITRQTISMIEAGKYNPSLKLCIGICKVLNKTLNDLF 61 >gi|153810982|ref|ZP_01963650.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] gi|149832870|gb|EDM87953.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] Length = 126 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R +SQ++L + LG++ + +E G Q IS+ + PIS F Sbjct: 8 NKLAQLRQNAHLSQKQLAQKLGVSQASINYWENGQRTPSVKAAQKISDYFKMPISEIFSP 67 Query: 77 SPTVCS 82 + Sbjct: 68 YKEEIN 73 >gi|257083082|ref|ZP_05577443.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256991112|gb|EEU78414.1| conserved hypothetical protein [Enterococcus faecalis Fly1] Length = 257 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q V K+E G + L +S++ I SP Sbjct: 7 LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|256960587|ref|ZP_05564758.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384412|ref|ZP_06630293.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|293389773|ref|ZP_06634215.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|312906563|ref|ZP_07765564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312910745|ref|ZP_07769584.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951083|gb|EEU67715.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078260|gb|EFE15624.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|291080931|gb|EFE17894.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|310627432|gb|EFQ10715.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311289008|gb|EFQ67564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 257 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q V K+E G + L +S++ I SP Sbjct: 7 LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|218134569|ref|ZP_03463373.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] gi|217989954|gb|EEC55965.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] Length = 268 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R GMSQ++L E + +T Q V ++E G L+ +S+ I+ Sbjct: 14 ILQLRTERGMSQDELAEKIMVTRQAVSRWENGETIPNTETLKLLSKEFNVSIN 66 >gi|89901996|ref|YP_524467.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346733|gb|ABD70936.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 201 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ P+ + +G+RIR +R LG + E+ + G+ + K E G+ L Sbjct: 1 MNDQSEPSSSEALLGQRIRAQRSQLGWTLEQTSQATGLARSTLSKIENGLMSPTYDALIK 60 Query: 62 ISEVLESPISFFFDVSPTVCS 82 ++ L+ IS F+ + + Sbjct: 61 LATGLQIDISELFEPNKNISG 81 >gi|71904207|ref|YP_281010.1| transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71803302|gb|AAX72655.1| transcriptional regulator [Streptococcus pyogenes MGAS6180] Length = 128 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R +SQEKL E + ++ Q + +E L +S++ + + Sbjct: 4 MEIGQQIIRYRKQQALSQEKLAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLD 62 >gi|317406552|gb|EFV86747.1| hypothetical protein HMPREF0005_04959 [Achromobacter xylosoxidans C54] Length = 184 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R +S E+LGE G+T + K E+G++ S + ++E +S Sbjct: 7 RLRALRRQQSLSLEQLGERTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVS------ 60 Query: 78 PTVCSDISSEENNVMDF--ISTPDGLQ 102 + + ++ V+ ++ + LQ Sbjct: 61 -QLVGGDGAAQDEVVSLVRVADREALQ 86 >gi|315147042|gb|EFT91058.1| helix-turn-helix protein [Enterococcus faecalis TX4244] Length = 257 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q + K+E G + L +S++ I SP Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|310830109|ref|YP_003962466.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308741843|gb|ADO39503.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 111 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+R R ++Q +L + GIT + E+G +++ VL Sbjct: 4 KYLGQRLRQFRKDAHLTQNQLAKKAGITPTYLSIIERGAQLPRLETFINLANVLSVSADD 63 Query: 73 -FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + ++ D + T + L L + Sbjct: 64 LLMEDQTESRKNLYPSFCVPSDNL-TDEQLVLVQ 96 >gi|295093301|emb|CBK82392.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 255 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R G+SQ+ L E + +T Q V ++E G L+ +S+ L+ I+ Sbjct: 7 ILELRTKRGLSQDDLAEKVMVTRQAVSRWENGETVPNTDTLKLLSKELDVSIN 59 >gi|295399293|ref|ZP_06809275.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294978759|gb|EFG54355.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 80 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RI+ R+ G++Q + + LG + + + E G + A ++ ++++L+ I+ Sbjct: 3 RQIGERIKEIRIKKGLTQSYVAKELGYKSPSMLSEIEAGKKGIDADKIPLLAKILDVDIN 62 Query: 72 FFF 74 F Sbjct: 63 ELF 65 >gi|295705639|ref|YP_003598714.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803298|gb|ADF40364.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 66 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI+ R MSQ++L + G++ Q + E + ++E L + + F Sbjct: 2 VENRIKELRKSKKMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAEELGATVDELF 61 >gi|257870456|ref|ZP_05650109.1| predicted protein [Enterococcus gallinarum EG2] gi|257804620|gb|EEV33442.1| predicted protein [Enterococcus gallinarum EG2] Length = 207 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+ I+ R M+Q+++ L +T Q + K+E+ ++ L +S++ Sbjct: 2 VEIGENIKKLRKAKRMTQKEVANQLNVTPQTISKWERNISYPDLDMLVKLSQLFHIS 58 >gi|326204877|ref|ZP_08194730.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984926|gb|EGD45769.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 108 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRIR R +G+++E+ E L ++ V + E+G ++ + +IS+ L + + Sbjct: 4 KEIGKRIRDERESIGLTRERFAELLELSINFVGQIERGEKKMSLETITNISDCLHVSLDY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +P + + + + + + + L Sbjct: 64 LIKGTPDSKINTTKLQKLISK--CSKEEISLI 93 >gi|255513995|gb|EET90259.1| transcriptional regulator, XRE family [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 291 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K +PN G+ I+ R + GMS+E L + +G++ + +YE G + + L+ + + Sbjct: 122 KSMPN------GELIKSLRKLSGMSREDLAKEVGLSKDSIYRYESGKSWISKKNLKKLED 175 Query: 65 VLESPISFFFDVSPTVCSDISSEENNV 91 + F + V I + + Sbjct: 176 YFGRSLKFDTEEYANVLEPIGTSSKGM 202 >gi|300861593|ref|ZP_07107677.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|295114549|emb|CBL33186.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300849054|gb|EFK76807.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|315144082|gb|EFT88098.1| helix-turn-helix protein [Enterococcus faecalis TX2141] Length = 257 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q + K+E G + L +S++ I SP Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|229016613|ref|ZP_04173552.1| Helix-turn-helix repressor protein [Bacillus cereus AH1273] gi|229022822|ref|ZP_04179345.1| Helix-turn-helix repressor protein [Bacillus cereus AH1272] gi|228738481|gb|EEL88954.1| Helix-turn-helix repressor protein [Bacillus cereus AH1272] gi|228744700|gb|EEL94763.1| Helix-turn-helix repressor protein [Bacillus cereus AH1273] Length = 71 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|218551631|ref|YP_002385423.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] gi|218359173|emb|CAQ91836.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] Length = 208 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R + SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINVPGGEALSKLAKFFNTSIDY 61 >gi|254245084|ref|ZP_04938406.1| hypothetical protein PA2G_05970 [Pseudomonas aeruginosa 2192] gi|126198462|gb|EAZ62525.1| hypothetical protein PA2G_05970 [Pseudomonas aeruginosa 2192] Length = 265 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 + +R LG++QE + LGIT + Y G N + A I+E+L+ + F SP Sbjct: 41 QQKRHELGLTQEGIARRLGITQGSLSHYLNGRNALNAEFAVKIAELLQVAVGSF---SPR 97 Query: 80 VCSDIS 85 + +I+ Sbjct: 98 LEEEIT 103 >gi|110680615|ref|YP_683622.1| DNA-binding protein, putative [Roseobacter denitrificans OCh 114] gi|109456731|gb|ABG32936.1| DNA-binding protein, putative [Roseobacter denitrificans OCh 114] Length = 356 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++ + L E +G++ + KYE G + + + ++ L P+ FFF + Sbjct: 6 RLKTARERRMLTAKGLAERVGVSAVTLSKYENG-HAPDEATAKRLAMALSYPLDFFFREA 64 Query: 78 PT 79 P Sbjct: 65 PE 66 >gi|325833014|ref|ZP_08165641.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485731|gb|EGC88196.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 153 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 7/92 (7%) Query: 5 KKIPNPVDINV-------GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 K P D V G+ +R R G++QE+LG +G ++ E+G Sbjct: 36 KNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVP 95 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEEN 89 + + LE+ D + SD + Sbjct: 96 DMIKLCRALEADPVELVDTAAFKLSDFPERQQ 127 >gi|317508465|ref|ZP_07966134.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC BAA-974] gi|316253243|gb|EFV12644.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC BAA-974] Length = 177 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R M+ E+L E G+T + K E+G++ + I+ L ++ FD Sbjct: 5 LRAARHQQRMTLEELAERTGLTKSYLSKVERGLSTPSIAVALKIAGALGVDVARLFDPES 64 Query: 79 TVC 81 Sbjct: 65 GDE 67 >gi|309777434|ref|ZP_07672392.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914830|gb|EFP60612.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 183 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R ++Q+ + L I + ++E+G +L + E+LE+ + + Sbjct: 3 NRIRQVRKAKKLTQQDIARKLNINQTAISQWERGSTVPKNEKLIQLCEILETSSDYLLGI 62 Query: 77 SPTVCSDISSEENNV 91 S + + V Sbjct: 63 SDDPAFRDAESKAVV 77 >gi|257792151|ref|YP_003182757.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476048|gb|ACV56368.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 141 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 7/92 (7%) Query: 5 KKIPNPVDINV-------GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 K P D V G+ +R R G++QE+LG +G ++ E+G Sbjct: 24 KNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVP 83 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEEN 89 + + LE+ D + SD + Sbjct: 84 DMIKLCRALEADPVELVDTAAFKLSDFPERQQ 115 >gi|222150964|ref|YP_002560117.1| hypothetical protein MCCL_0714 [Macrococcus caseolyticus JCSC5402] gi|222120086|dbj|BAH17421.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 180 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R ++QE+LGE ++ + + E+ + +I EVL S Sbjct: 1 MDIGKKIKDLRRQKNLTQEELGERTDLSKGYISQLERNLCSPSMETFFNILEVLGSKPKD 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|154497045|ref|ZP_02035741.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] gi|150273444|gb|EDN00572.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] Length = 94 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R+ R GM+QE+L E L ++ Q V E G I+ + E+ I F + Sbjct: 29 NRLEELRKARGMTQEELAEALEVSRQTVGSLENGRYNPSILLAFKIARLFETTIEEVFLY 88 Query: 75 DVSPTV 80 + Sbjct: 89 EEQGEE 94 >gi|153813857|ref|ZP_01966525.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|331088191|ref|ZP_08337110.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848253|gb|EDK25171.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|330408435|gb|EGG87901.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] Length = 215 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+G++I R G+SQ+ ++ Q + +E G + + +S+ + I Sbjct: 1 MNIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISID 59 >gi|110636925|ref|YP_677132.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279606|gb|ABG57792.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 75 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + + + +GK+I+ R G+SQ L + GI+ Q+ + E G + L Sbjct: 1 MIMSLTKEHFL-KTIGKKIKTLREAKGLSQYALSDESGISRSQIVRLENGDLNCTLATLL 59 Query: 61 HISEVLESPISFFFDV 76 ++E L DV Sbjct: 60 VLAETLGVEPKDLLDV 75 >gi|27764612|ref|NP_776234.1| Yga2B [Corynebacterium glutamicum] gi|27657783|gb|AAO18211.1| Yga2B [Corynebacterium glutamicum] Length = 81 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + I +G RIR R LG+SQE+L G+ V E+G + L Sbjct: 1 MTPDKK----ILIQLGGRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLL 56 Query: 61 HISEVLESP 69 ++ VL Sbjct: 57 SLAGVLGVD 65 >gi|330447298|ref|ZP_08310948.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491489|dbj|GAA05445.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 112 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FDV 76 +IR R G++Q + + LG+ Q E G L +I+++ +S+F +D Sbjct: 7 KIREAREWKGITQVAMAKQLGVARQTYLDLESGKTEPRVLMLLNIAKITGRSLSWFLYDD 66 Query: 77 SPTVCSDI 84 DI Sbjct: 67 GNPEYGDI 74 >gi|229070774|ref|ZP_04204003.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185] gi|228712353|gb|EEL64299.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185] Length = 374 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 +P + + Sbjct: 64 LISYTPQMKQE 74 >gi|125718672|ref|YP_001035805.1| YorfE protein [Streptococcus sanguinis SK36] gi|323350334|ref|ZP_08085999.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|125498589|gb|ABN45255.1| YorfE protein, putative [Streptococcus sanguinis SK36] gi|322123519|gb|EFX95190.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|328945063|gb|EGG39219.1| transcriptional regulator [Streptococcus sanguinis SK1087] Length = 71 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|118478614|ref|YP_895765.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118417839|gb|ABK86258.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 374 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSE 87 P + + E Sbjct: 64 LISYKPQMEQEDIKE 78 >gi|29348192|ref|NP_811695.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253569505|ref|ZP_04846915.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298386116|ref|ZP_06995673.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|29340095|gb|AAO77889.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251841524|gb|EES69605.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298261344|gb|EFI04211.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 191 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKALREDKSISIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D + Sbjct: 67 DDQDEIGP 74 >gi|329116487|ref|ZP_08245204.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906892|gb|EGE53806.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 121 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLES 68 VG+RI+ R + Q +L E +G Q + K+E G N +L +++ L + Sbjct: 10 VGRRIKQLRESRNIEQLELAELMGYKSQSTISKWESGTNLPNGGKLVKLAKALNT 64 >gi|326381708|ref|ZP_08203402.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326199955|gb|EGD57135.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 96 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 32/69 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ GM+Q++L G++ + + E G + + + R+ ++E L + + + Sbjct: 24 GAALAQARLTAGMTQDELAAASGVSRPTISRLELGTSSISSDRVWDLAEALGTTPADIYA 83 Query: 76 VSPTVCSDI 84 V+ Sbjct: 84 VAQREARAT 92 >gi|325068956|ref|ZP_08127629.1| XRE family transcriptional regulator [Actinomyces oris K20] Length = 80 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M ++K P +P G+R+R RR LG+SQEKL E + + + + E+G + + Sbjct: 1 MPTDRKPPLSPATGEFGRRVRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNI 60 Query: 60 QHISEVLESP 69 I+ L++ Sbjct: 61 LRIAHALDTD 70 >gi|289522427|ref|ZP_06439281.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504263|gb|EFD25427.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 216 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR R + M+ +L + + + + E+G + L I++ L++ I + Sbjct: 2 LGERIRTLRKKMRMTATELARRVKTSPSHISEIERGEKTPSLNLLVKIAKELQTSIDYL 60 >gi|269838117|ref|YP_003320345.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787380|gb|ACZ39523.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 68 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G +Q+ LG +G++ Q + E G ++ V E+ I F Sbjct: 3 NRVREARQKQGWTQDDLGRRVGVSRQTINAIENGRYDPSLPLAFKLARVFETTIEDLF 60 >gi|258512333|ref|YP_003185767.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479059|gb|ACV59378.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 165 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VG+RI R G++Q KL E ++ + YE + L I+E L Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGV 63 >gi|218690255|ref|YP_002398467.1| Repressor protein CI from phage [Escherichia coli ED1a] gi|218427819|emb|CAR08732.2| Repressor protein CI from phage [Escherichia coli ED1a] Length = 215 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-- 71 +G+RI+ R G+SQ +L + G ++ YE G +V A + L + Sbjct: 8 IGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKI 67 Query: 72 FFFDVSPTV 80 F + S V Sbjct: 68 MFGEDSDAV 76 >gi|222054772|ref|YP_002537134.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564061|gb|ACM20033.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 181 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RMI ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 FF S T+ D+ ++ + + Sbjct: 61 FF--SETIDEDVVYGKDYRVQASGDDE 85 >gi|15802659|ref|NP_288686.1| putative repressor protein CI of prophage CP-933V [Escherichia coli O157:H7 EDL933] gi|12516411|gb|AAG57241.1|AE005443_9 putative repressor protein CI of prophage CP-933V [Escherichia coli O157:H7 str. EDL933] Length = 215 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-- 71 +G+RI+ R G+SQ +L + G ++ YE G +V A + L + Sbjct: 8 IGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKI 67 Query: 72 FFFDVSPTV 80 F + S V Sbjct: 68 MFGEDSDAV 76 >gi|15832244|ref|NP_311017.1| prophage repressor CI [Escherichia coli O157:H7 str. Sakai] gi|168764190|ref|ZP_02789197.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|11875129|dbj|BAB19608.1| CI protein [Enterobacteria phage VT1-Sakai] gi|13362459|dbj|BAB36413.1| putative prophage repressor CI [Escherichia coli O157:H7 str. Sakai] gi|189365770|gb|EDU84186.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|326343910|gb|EGD67671.1| Putative prophage repressor CI [Escherichia coli O157:H7 str. 1044] Length = 212 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-- 71 +G+RI+ R G+SQ +L + G ++ YE G +V A + L + Sbjct: 5 IGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKI 64 Query: 72 FFFDVSPTV 80 F + S V Sbjct: 65 MFGEDSDAV 73 >gi|193070526|ref|ZP_03051466.1| repressor protein CI [Escherichia coli E110019] gi|192956220|gb|EDV86683.1| repressor protein CI [Escherichia coli E110019] Length = 215 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-- 71 +G+RI+ R G+SQ +L + G ++ YE G +V A + L + Sbjct: 8 IGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKI 67 Query: 72 FFFDVSPTV 80 F + S V Sbjct: 68 MFGEDSDAV 76 >gi|329117486|ref|ZP_08246203.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907891|gb|EGE54805.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 194 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK++ R G+SQE L E + ++ Q + +E + L ++ + + + Sbjct: 1 MELGKKLSSCRKKAGLSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFQLSLDQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 + I ++ Sbjct: 61 LVEGDIDEMKKIVQSDD 77 >gi|255528296|ref|ZP_05395109.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255508014|gb|EET84441.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 71 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R G++ +L + G+T + + E+ + S L+ IS LE PI F Sbjct: 2 LGPKIREIRQEKGLTLNELADKTGLTASYLSQIERNIIDPSLSSLRKISLSLEVPIYTFL 61 Query: 75 DVSPTVCS 82 Sbjct: 62 TDEKKTKG 69 >gi|182624148|ref|ZP_02951935.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] gi|177910764|gb|EDT73124.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] Length = 141 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R +SQE+L + L I+ Q + K+E G L + ++ + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLD 59 >gi|153954530|ref|YP_001395295.1| hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] gi|146347388|gb|EDK33924.1| Hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] Length = 100 Score = 54.4 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 41/97 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+RI+ R+ ++ +L + +G+T + + + E L+ + L ++ Sbjct: 1 MQFGERIKSLRLSNKLTATQLAKDIGVTREYLSRLENNAKSPSFELLEKLCGALNITLAE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FF + +E + TP+ L+ FI+ Sbjct: 61 FFKTDSSDIIPEHFKEFINQNKNLTPEQLEKLNEFIK 97 >gi|325849104|ref|ZP_08170596.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480349|gb|EGC83412.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 202 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R G +Q L + L +T + YE+ L+ +++ + + + Sbjct: 1 MSVGVRLKQLRKSSGKTQRDLAKLLYVTASSIGMYERDERTPSPDVLKKYADIFDVSLDY 60 >gi|306824544|ref|ZP_07457890.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306830126|ref|ZP_07463310.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304427652|gb|EFM30748.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304433331|gb|EFM36301.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 64 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG+SQ L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLDLAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|322434546|ref|YP_004216758.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321162273|gb|ADW67978.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 135 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +N+G IR R+ GMSQ + + G+ + + E G LQ I+ L+ Sbjct: 18 SISMNIGTTIRDYRLQRGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAGALDLQ 77 Query: 70 IS-FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +S FF + + + F++ Q+ RY + D R+ ++ +VR S Sbjct: 78 LSQFFAEDQVQKEVSTLNLSEEEIRFLT-----QVQRYSAHLSDSD-RRLLLAMVRKFAS 131 Query: 129 S 129 + Sbjct: 132 T 132 >gi|289769674|ref|ZP_06529052.1| transcriptional regulator [Streptomyces lividans TK24] gi|289699873|gb|EFD67302.1| transcriptional regulator [Streptomyces lividans TK24] Length = 208 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G V ++G R+R R G++ +L GI+ + + E G G L Sbjct: 7 MSGGDDETAQVMTSLGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLL 66 Query: 61 HISEVLESPIS 71 ++ P+ Sbjct: 67 PLARAHRLPLD 77 >gi|253752177|ref|YP_003025318.1| DNA-binding membrane protein [Streptococcus suis SC84] gi|253754003|ref|YP_003027144.1| DNA-binding membrane protein [Streptococcus suis P1/7] gi|253755938|ref|YP_003029078.1| DNA-binding membrane protein [Streptococcus suis BM407] gi|251816466|emb|CAZ52102.1| putative DNA-binding membrane protein [Streptococcus suis SC84] gi|251818402|emb|CAZ56230.1| putative DNA-binding membrane protein [Streptococcus suis BM407] gi|251820249|emb|CAR46699.1| putative DNA-binding membrane protein [Streptococcus suis P1/7] gi|319758564|gb|ADV70506.1| putative DNA-binding membrane protein [Streptococcus suis JS14] Length = 158 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N G++I+ R G++QE+ L +T Q V +E N L +S V + Sbjct: 1 MNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLD 59 >gi|198277577|ref|ZP_03210108.1| hypothetical protein BACPLE_03799 [Bacteroides plebeius DSM 17135] gi|198270075|gb|EDY94345.1| hypothetical protein BACPLE_03799 [Bacteroides plebeius DSM 17135] Length = 184 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR R L +S E + G+ + Q+ E G + S LQ I P+ Sbjct: 6 RQIGERIRGLRDALDLSVEDMAGQCGLPVDKYQQIESGECDIAVSTLQQIGRKCNVPLDV 65 Query: 73 F-FDVSP 78 F P Sbjct: 66 LMFGEEP 72 >gi|332974608|gb|EGK11526.1| LexA family repressor/S24 family protease [Psychrobacter sp. 1501(2011)] Length = 212 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R +S++ LG +G++ ++ +E+ N + +S+V I + Sbjct: 4 LGQRLFNLRRSKKLSRDALGAKIGVSKTAIKNWEEDSNFPKHEFIDGLSKVFGCSIGYLV 63 Query: 75 DVSPTVCS 82 D P + Sbjct: 64 DGIPDGDN 71 >gi|312868248|ref|ZP_07728448.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311095993|gb|EFQ54237.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 115 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 39/87 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R G++Q + E LGI+ +E+G+ + L +S++L + + Sbjct: 1 MEFSERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIKKPTQDNLVKLSKILYVSVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 + + E+ ++ +++ Sbjct: 61 LLGNTENRQTSDVLEDIELLFRMNSKG 87 >gi|307545572|ref|YP_003898051.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217596|emb|CBV42866.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 200 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R +SQ +L + +T + E+ S L+ I + L I+ FF Sbjct: 7 VGARLRQLRQERQLSQRELAKRAQVTNSTISLIEQNSVSPSVSSLKKILDALPVSITAFF 66 Query: 75 DVSPTV 80 Sbjct: 67 AGEEPS 72 >gi|262368258|ref|ZP_06061587.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262315936|gb|EEY96974.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 106 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 9/92 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R+ R +SQE+LG GI ++ +YE+G + I+E+L+ P ++F Sbjct: 12 RLRIARKAKKLSQERLGILAGIDESSASARMNQYERGKHVPDFLMASKIAEILDLPTAYF 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + V +D+S+E V +S L++ R Sbjct: 72 Y-----VENDLSAEIIQVSHALSNEQKLEVLR 98 >gi|229529008|ref|ZP_04418398.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|229332782|gb|EEN98268.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|327484506|gb|AEA78913.1| Transcriptional regulator yidN, Cro/CI family [Vibrio cholerae LMA3894-4] Length = 181 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKKLRKSRGLSLDTTAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S ++ Sbjct: 69 FANDPQLLSSERSFPDDP 86 >gi|228991352|ref|ZP_04151308.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] gi|228997428|ref|ZP_04157047.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|229005073|ref|ZP_04162797.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228756175|gb|EEM05496.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228762304|gb|EEM11231.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|228768370|gb|EEM16977.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] Length = 181 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +IN+GK+++ R +S +L + IT + + E+G+ L+ +++ LE P Sbjct: 3 NINIGKKVKELREYKELSMRELAKMAEITPSMLSQIERGLANPSIQTLKLLAKALEVPTF 62 Query: 72 FF 73 F Sbjct: 63 SF 64 >gi|218289603|ref|ZP_03493823.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218240253|gb|EED07436.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 436 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R GM+Q +L L T + + E A L HI+ L +S F Sbjct: 4 LGQKIRALRKARGMTQSELARGLA-TASMISQIESDRTMPSAQLLAHIAARLGVDVSEF 61 >gi|222530443|ref|YP_002574325.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457290|gb|ACM61552.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 67 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPI 70 GK+I+ R + G SQ++L + G++ + + E G ++ I+EVLE I Sbjct: 4 GKKIKELRKLKGFSQKELAKLTGVSQSYISELEAGIKTNPSIKVIKRIAEVLEIDI 59 >gi|166032986|ref|ZP_02235815.1| hypothetical protein DORFOR_02707 [Dorea formicigenerans ATCC 27755] gi|225028332|ref|ZP_03717524.1| hypothetical protein EUBHAL_02604 [Eubacterium hallii DSM 3353] gi|166027343|gb|EDR46100.1| hypothetical protein DORFOR_02707 [Dorea formicigenerans ATCC 27755] gi|224954378|gb|EEG35587.1| hypothetical protein EUBHAL_02604 [Eubacterium hallii DSM 3353] Length = 152 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 + G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S Sbjct: 14 MTFGEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVS 73 Query: 72 FFFDVSPTVCSDISSE 87 + ++ S + Sbjct: 74 YLMSEDEAFITEASEQ 89 >gi|154502909|ref|ZP_02039969.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC 29149] gi|153796448|gb|EDN78868.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC 29149] Length = 118 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ K EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKKKDLTQQELADLSHVSIKQIAKIEKGKINPSYLILKALAKVL- 60 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTP 98 PIS ++P V + M + S P Sbjct: 61 -PISLDTLINPDVSPEDEGATQMKMLYCSCP 90 >gi|145220714|ref|YP_001131392.1| hypothetical protein Mflv_0109 [Mycobacterium gilvum PYR-GCK] gi|315442334|ref|YP_004075213.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|145213200|gb|ABP42604.1| protein of unknown function DUF955 [Mycobacterium gilvum PYR-GCK] gi|315260637|gb|ADT97378.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1] Length = 482 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 18/134 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGARVRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCS------------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T D+ + + + +++ L R + + R+ + Sbjct: 65 ASQDDTRLIAELREVTMDRDLDVEVDPAEIAEVVASH--PSLARAMVNL----HRRYQLT 118 Query: 122 LVRSIVSSEKKYRT 135 + ++E ++ T Sbjct: 119 TTQLAAATEDRFNT 132 >gi|104780997|ref|YP_607495.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95109984|emb|CAK14689.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 104 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R + ++Q +LGE G + + ++E G L + +E L FF Sbjct: 6 LGPALRRYRKLASLTQAQLGERTGFDPKTISRFETGTYTPSIEALMNFAEALGVKPKVFF 65 Query: 75 DVSPTVCSDIS 85 + Sbjct: 66 AEPDDEEEQRA 76 >gi|9630498|ref|NP_046933.1| CB [Enterobacteria phage N15] gi|1184742|gb|AAB81655.1| repressor protein [Enterobacteria phage N15] gi|3192717|gb|AAC19070.1| gp38 [Enterobacteria phage N15] gi|89158281|gb|ABD62892.1| cB [Cloning vector pJAZZ-KA] gi|124491097|gb|ABN12903.1| CB [Cloning vector pN15E4] gi|124491104|gb|ABN12909.1| CB [Cloning vector pN15E6] gi|205318621|gb|ACI02337.1| CB [Linear cloning vector pJAZZ-OK] gi|269974867|gb|ACZ55231.1| phage repressor cB [Cloning vector pJAZZ-OCmin] Length = 202 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R++ RR+ L ++ +++ E +GI+ VQ E+G +++ L P+ + Sbjct: 9 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQWILY 68 Query: 75 --DVSPTVCSDISSEEN 89 + P I + E Sbjct: 69 GTESDPDRVPVIGTTET 85 >gi|107029107|ref|YP_626202.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689734|ref|YP_835357.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170733070|ref|YP_001765017.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105898271|gb|ABF81229.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116647823|gb|ABK08464.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169816312|gb|ACA90895.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 191 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 7/126 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 11 VAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIVSS 129 +F D S F ++ F ++ + V R+ LVR Sbjct: 71 QYFIDTPTEARSVCRGNAMQYFQFANS------ASLFARLTNLVDGRKLDAILVRMPAGQ 124 Query: 130 EKKYRT 135 T Sbjct: 125 SPSEIT 130 >gi|167746879|ref|ZP_02419006.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|317471690|ref|ZP_07931031.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] gi|167653839|gb|EDR97968.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|316900794|gb|EFV22767.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] Length = 194 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK I+ R ++Q +L E + I+ + + K+E+G+ S +S V + + Sbjct: 6 IGKLIKTLRKEKQLTQMQLAEHMNISDKTISKWERGLGCPDISFFPKLSGVFDVDL 61 >gi|78186562|ref|YP_374605.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166464|gb|ABB23562.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 101 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R++ +QEKL G++ + E+G + +++ L+ I Sbjct: 24 LGLKIRIARIMASYTQEKLAVRSGLSMAYIGMIERGEKNITILNCHKLAKALDITIGDLL 83 Query: 75 DV 76 D Sbjct: 84 DG 85 >gi|56698227|ref|YP_168599.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679964|gb|AAV96630.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G +R R G++ ++ LG + + + E+ ++ S L+ I+ L P Sbjct: 6 PSSATLGADLRALRKARGLTLSEIAARLGRSVGWLSQVERDMSEPSISDLRQIAGCLGVP 65 Query: 70 ISFFFDVSPTVCSD 83 +S F + + Sbjct: 66 MSMLFAHAAAPAEE 79 >gi|55822658|ref|YP_141099.1| restriction-modification system regulatory protein [Streptococcus thermophilus CNRZ1066] gi|55738643|gb|AAV62284.1| restriction-modification system regulatory protein, putative [Streptococcus thermophilus CNRZ1066] Length = 75 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + GKRI+ R G+SQEK +G+ E G V ++ I+ + I Sbjct: 2 IQVAFGKRIKELRKQTGLSQEKFALKIGMDRTYYASIESGKRNVSLKNIEKIASGFDISI 61 Query: 71 SFFF 74 S F Sbjct: 62 SQLF 65 >gi|42780467|ref|NP_977714.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] gi|42736386|gb|AAS40322.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] Length = 107 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE-ENNVMDFIST 97 T + + SE V D +S+ Sbjct: 62 LHDETTRENHLDSEWTQLVKDAMSS 86 >gi|148548763|ref|YP_001268865.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512821|gb|ABQ79681.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 184 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 9/89 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ +L + +G + + + E+GV+R + L ISE L ++F+ + Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLDK 73 Query: 79 TVCSDISSEENN---------VMDFISTP 98 D + + + D +++P Sbjct: 74 PRELDWVTRPHERRTLHLAGGITDVLASP 102 >gi|330502985|ref|YP_004379854.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917271|gb|AEB58102.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 190 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 9/89 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R ++ +L E +G + + + E+G++R + L I+E L+ P ++F+ + Sbjct: 19 IHDLRKHKKVTLNELAERIGRSVGFLSQVERGLSRPTVADLTAIAEALDVPTTYFYSLPK 78 Query: 79 TVCSDISSEENN---------VMDFISTP 98 D + + + D +++P Sbjct: 79 PKALDWVTRPDERRTLYLAGGITDIMASP 107 >gi|323486113|ref|ZP_08091444.1| hypothetical protein HMPREF9474_03195 [Clostridium symbiosum WAL-14163] gi|323400680|gb|EGA93047.1| hypothetical protein HMPREF9474_03195 [Clostridium symbiosum WAL-14163] Length = 86 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS---FF 73 RIR R G++QE+LGE +G + Q + E IS++ I F Sbjct: 3 NRIRELREQKGLTQEQLGEMVGASRQAINAIETEKFEPSIWLAYDISQIFGCSIEEVFLF 62 Query: 74 FDVSPTVCSDISSEEN 89 + +D S EN Sbjct: 63 AESQKKSRADRSRGEN 78 >gi|307710469|ref|ZP_07646906.1| putative transcriptional regulator [Streptococcus mitis SK564] gi|307618732|gb|EFN97871.1| putative transcriptional regulator [Streptococcus mitis SK564] Length = 113 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R ++Q + E LGI+ +E+G+ + L I+++L + + Sbjct: 1 MEFSERLKTLRKQAQLTQVDVAEKLGISQPAYASWERGIKKPTQENLVKIAQILNVSVDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|182625932|ref|ZP_02953697.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908845|gb|EDT71343.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 348 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 7 IKEKRNSQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKVDLN 59 >gi|169335357|ref|ZP_02862550.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] gi|169258095|gb|EDS72061.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] Length = 138 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 K ++ R G++QE+L E +G++ Q + K+EKG + + +S V I Sbjct: 4 KNLKDLRKNNGLTQEQLSEKIGVSRQAIGKWEKGESIPDLYSILELSNVYSITID 58 >gi|148380346|ref|YP_001254887.1| DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] gi|148289830|emb|CAL83938.1| putative DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] Length = 144 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R G++Q +L + L + V +E A L I++ + + Sbjct: 2 KTIGERIKELREEKGINQLELSKILNVHKGSVSNWENNKRTPDADMLTKIADFFNCSVDY 61 Query: 73 F 73 Sbjct: 62 L 62 >gi|290890363|ref|ZP_06553439.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429] gi|290479981|gb|EFD88629.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429] Length = 67 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R +SQE L L I+ Q + K+E G + L +SE+L+ + Sbjct: 6 EQLKKYRNKKNLSQEDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLD 60 >gi|322390908|ref|ZP_08064416.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142421|gb|EFX37891.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 158 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVS 56 >gi|310640139|ref|YP_003944897.1| hth-type transcriptional regulator [Paenibacillus polymyxa SC2] gi|309245089|gb|ADO54656.1| Putative HTH-type transcriptional regulator [Paenibacillus polymyxa SC2] Length = 184 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 36/83 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + K ++ R +S +KL + GI+ + + E+G + + + I+ L+ Sbjct: 5 INLILSKNLKHLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISF 64 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + P + + V++ Sbjct: 65 TALISEPPADAVVVPKSKVQVLE 87 >gi|260437613|ref|ZP_05791429.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809966|gb|EFF69171.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 117 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + N+GKR+R R +SQ+ + + LGI +Q Q+YE G + + +L Sbjct: 1 MSNDNDKDQEYQKNMGKRLRKIRKENALSQDDVADALGICTKQYQRYEYGDSAISCEKLS 60 Query: 61 HISEVLESPISF 72 + E + + Sbjct: 61 ILEESFHFDVRY 72 >gi|258511714|ref|YP_003185148.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478440|gb|ACV58759.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 436 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R GM+Q +L L T + + E A L HI+ L +S F Sbjct: 4 LGQKIRALRKARGMTQSELARGLA-TASMISQIESDRTMPSAQLLAHIAARLGVDVSEF 61 >gi|291286857|ref|YP_003503673.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884017|gb|ADD67717.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 244 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G++I+ R I +Q K+ + L IT+Q Q +EK N + ++ I+ L + Sbjct: 3 KHIGEKIKDLRRIKNYTQVKIADILSITYQTYQHHEKTGN-FDSHKIIKIANALGVDYNT 61 Query: 73 FFDVS 77 FD+ Sbjct: 62 IFDLE 66 >gi|167747594|ref|ZP_02419721.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662] gi|239623032|ref|ZP_04666063.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652956|gb|EDR97085.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662] gi|239522611|gb|EEQ62477.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 123 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + IR R G++QE L E GI+ + K E G +G I E LE Sbjct: 10 ENIRRAREERGLTQEALAELAGISHSHLSKVESGSRTIGMKTYIKILEALEV 61 >gi|91780754|ref|YP_555961.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91693414|gb|ABE36611.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 204 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R+ G+S +L G++ V + E+ L+ + + LE P++ Sbjct: 19 VGARLRALRVAQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTALL 78 Query: 75 DVSPTVCSDISSE 87 + V I+ + Sbjct: 79 EEDDAVSDPITGD 91 >gi|89896521|ref|YP_520008.1| hypothetical protein DSY3775 [Desulfitobacterium hafniense Y51] gi|89335969|dbj|BAE85564.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 63 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I+ R +SQE L + ++ Q + E S ++EVL+ + F+ Sbjct: 3 NNIKQHRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELFN 61 >gi|294794380|ref|ZP_06759516.1| DNA-binding protein [Veillonella sp. 3_1_44] gi|294454710|gb|EFG23083.1| DNA-binding protein [Veillonella sp. 3_1_44] Length = 127 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV--NRVGASRLQHISEVLESPIS 71 +G +I + R+ L MSQ++L +GI+ + K E G + + L I++ + + Sbjct: 28 LGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIAQAFQINVG 86 >gi|289649967|ref|ZP_06481310.1| XRE family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|320321116|gb|EFW77260.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|330988517|gb|EGH86620.1| XRE family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 221 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+++ R G+SQ +L GI + + E G N G+S + I++ + + Sbjct: 7 RLKIARAHAGLSQGELALKAGIKQPVISQLETGKN-AGSSFVVSIAKACGVNAEWLVNGQ 65 Query: 78 PTVCSDISSEENNVMDFIS 96 + + S + NV ++ Sbjct: 66 GGMLPETSGFDANVEPALA 84 >gi|257414251|ref|ZP_04745748.2| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200672|gb|EEU98956.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 128 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK +D ++G R++ R+ ++ ++L E G++ + +++ E N +L Sbjct: 13 MAKSKK----IDKDMGFRLKKARLDQKLTYDELSEKSGVSSRYIKEIENHGNVPSLEKLG 68 Query: 61 HISEVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDG--LQLNRYFIQ 109 + L FF+ +PT D + + + L L +++ Sbjct: 69 QLIRALHISADPFFYPAAPTDNLDYQRLLVYLSECTNDQITTILALVEAYLR 120 >gi|187933844|ref|YP_001884286.1| adenine-specific DNA methyltransferase [Clostridium botulinum B str. Eklund 17B] gi|187721997|gb|ACD23218.1| adenine-specific DNA methyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 194 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 VG+++ R ILG+SQ +LG G++ Q + K E + L I+ Sbjct: 2 VGEKVAKFRKILGISQRELGRRTGLSGQMISKIENNLTNPSLETLGKIA 50 >gi|159043315|ref|YP_001532109.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911075|gb|ABV92508.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 130 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R +G++Q +L + LG+ + ++ +E+ ++ A+R+Q +S +L +S+ Sbjct: 16 GDRLAGAREAVGLTQAQLAKRLGVKAKTLRDWEEDLSEPRANRIQMLSGLLNVSLSWLMT 75 Query: 76 VSPTVCSDISSEENNVMD 93 + D Sbjct: 76 GEGEGIDAPDLGSDMPGD 93 >gi|313145312|ref|ZP_07807505.1| predicted protein [Bacteroides fragilis 3_1_12] gi|313134079|gb|EFR51439.1| predicted protein [Bacteroides fragilis 3_1_12] Length = 89 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +IR RR +LG++Q+ L + I+ + K E G + +L I EVL +S Sbjct: 21 KQIGIQIRQRRKMLGINQQTLADLAQISINTITKIENGEININFQKLYAILEVLGLELS 79 >gi|302672095|ref|YP_003832055.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396568|gb|ADL35473.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 346 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K ++ R+ MS + L + +G+T + YE G + + ++EVL + F Sbjct: 4 KNLKYYRLKKNMSMKDLADAVGVTSMAISNYESGKRQPEIEIINKMAEVLGIKVVDF 60 >gi|300716279|ref|YP_003741082.1| regulatory protein [Erwinia billingiae Eb661] gi|299062115|emb|CAX59231.1| Regulatory protein [Erwinia billingiae Eb661] Length = 229 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R M+ L +G + + E+GV + LQ +++ L PIS F Sbjct: 4 GERIRQLRKAKKMTLNALAMQVGSDVGNLSRLERGVQGYSDALLQKLADALAVPISALF 62 >gi|295099031|emb|CBK88120.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 139 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 + G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S Sbjct: 1 MTFGEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVS 60 Query: 72 FFFDVSPTVCSDISSE 87 + ++ S + Sbjct: 61 YLMSEDEAFITEASEQ 76 >gi|326441821|ref|ZP_08216555.1| hypothetical protein SclaA2_12194 [Streptomyces clavuligerus ATCC 27064] Length = 417 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR---LQHISEVLESPIS 71 +G+RI+ RR+ LGM Q LG +G + V K EKG R+ R + I+ L + Sbjct: 11 IGRRIKRRRLALGMPQADLGAAVGQSQGWVSKVEKG--RIELDRAALINSIAAALHCHPN 68 Query: 72 FFFD 75 D Sbjct: 69 DLID 72 >gi|282600115|ref|ZP_05973067.2| conserved domain protein [Providencia rustigianii DSM 4541] gi|282566469|gb|EFB72004.1| conserved domain protein [Providencia rustigianii DSM 4541] Length = 96 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ RR+ L ++Q +L + +G+ Q +Q+ E G+ + + I+ L+ S+ Sbjct: 31 LSERVKSRRVELNLTQSELADMVGLKQQSIQQIESGLIK-KPRFIIEIASALKCEPSWLI 89 Query: 75 DVSPTVC 81 S V Sbjct: 90 SGSKNVA 96 >gi|210611542|ref|ZP_03288946.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787] gi|210151943|gb|EEA82950.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787] Length = 194 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDN 60 Query: 73 FFDVSPTVCSDISSEEN 89 F +I + Sbjct: 61 FIKEDIKEMREIVEKAT 77 >gi|254390105|ref|ZP_05005326.1| hypothetical protein SSCG_02653 [Streptomyces clavuligerus ATCC 27064] gi|294813466|ref|ZP_06772109.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703813|gb|EDY49625.1| hypothetical protein SSCG_02653 [Streptomyces clavuligerus ATCC 27064] gi|294326065|gb|EFG07708.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 466 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR---LQHISEVLESPIS 71 +G+RI+ RR+ LGM Q LG +G + V K EKG R+ R + I+ L + Sbjct: 60 IGRRIKRRRLALGMPQADLGAAVGQSQGWVSKVEKG--RIELDRAALINSIAAALHCHPN 117 Query: 72 FFFD 75 D Sbjct: 118 DLID 121 >gi|153814064|ref|ZP_01966732.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC 27756] gi|317499821|ref|ZP_07958059.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087904|ref|ZP_08336828.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848460|gb|EDK25378.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC 27756] gi|316898723|gb|EFV20756.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409391|gb|EGG88837.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium 3_1_46FAA] Length = 194 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDN 60 Query: 73 FFDVSPTVCSDISSEEN 89 F +I + Sbjct: 61 FIKEDIKEMKEIVEKAT 77 >gi|119964507|ref|YP_946525.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119951366|gb|ABM10277.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 495 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 30/91 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+R+R R G++ + L +G Q+ E LQ ++ L I Sbjct: 25 ISLGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENAKREPKLGLLQQLAASLNVTIDQ 84 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 P E + L L Sbjct: 85 LLGAEPPSRRAALEIELERYQRGPLYESLNL 115 >gi|89071275|ref|ZP_01158446.1| transcriptional regulator, XRE family protein [Oceanicola granulosus HTCC2516] gi|89043205|gb|EAR49438.1| transcriptional regulator, XRE family protein [Oceanicola granulosus HTCC2516] Length = 134 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+SQ+ L LG+ Q ++ +E + A++LQ +S +L + + Sbjct: 21 GDRLAAAREAAGLSQKDLARRLGVKHQTLKHWEDDIAEPRANKLQMLSGLLSVSLRWLLT 80 Query: 76 VSPTVCSDISSEE 88 + E Sbjct: 81 GHGEGVEPPGAAE 93 >gi|291544611|emb|CBL17720.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 145 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R +G+SQ+ L E + +T Q V ++E G L+ +S+V + I+ Sbjct: 7 ILQLRTQMGLSQDALAEKIYVTRQAVSRWENGETIPNVEALKLLSQVFDVSIN 59 >gi|191639822|ref|YP_001988988.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23] gi|190714124|emb|CAQ68130.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23] gi|327383933|gb|AEA55409.1| Transcriptional regulator, XRE family [Lactobacillus casei LC2W] gi|327387114|gb|AEA58588.1| Transcriptional regulator, XRE family [Lactobacillus casei BD-II] Length = 212 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 4/83 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R +SQ L L +T Q + YE+G+ + +S+ L I + Sbjct: 4 NRIKAAREAAHLSQGDLAAQLKVTRQTISAYERGLREPRMDVWKSLSDALSVSIPYL--- 60 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + SD + + + ++ + Sbjct: 61 -QGISSDPIAIDETIAHTMTNRE 82 >gi|158422455|ref|YP_001523747.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329344|dbj|BAF86829.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 301 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +RIR R LGM+Q + LG++ V K+E + + L I+E+ Sbjct: 59 MPNYA-----RRIREIRKNLGMNQAEFAAALGVSQGSVSKWEAAKEQPRTTALLKIAELA 113 Query: 67 ESPISFFFDVSPT 79 P F + Sbjct: 114 GLPSFSLFSGTDH 126 >gi|147724743|gb|ABQ45979.1| repressor [Linear cloning vector pJAZZ-OC] Length = 198 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R++ RR+ L ++ +++ E +GI+ VQ E+G +++ L P+ + Sbjct: 5 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQWILY 64 Query: 75 --DVSPTVCSDISSEEN 89 + P I + E Sbjct: 65 GTESDPDRVPVIGTTET 81 >gi|326388271|ref|ZP_08209874.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] gi|326207437|gb|EGD58251.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] Length = 197 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+ R G+SQ L + Q+ + E + L+ I L ++ FF Sbjct: 11 VGQRLLELRRRAGLSQRALAARADVPHAQISQIESNRISPSIASLRRILGGLGLSMAEFF 70 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + + + ++D S Sbjct: 71 EPERKEADQVFFRTDELVDLTS 92 >gi|254792649|ref|YP_003077486.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] gi|254592049|gb|ACT71410.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] Length = 200 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 4 NKKIPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K+ N + D ++ + + R ++ +L + G++ + K E+G + A+ L + Sbjct: 8 DKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRL 67 Query: 63 SEVLESPISFFF 74 + L +S F Sbjct: 68 ANALNITLSKLF 79 >gi|237746752|ref|ZP_04577232.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] gi|229378103|gb|EEO28194.1| transcriptional regulator [Oxalobacter formigenes HOxBLS] Length = 109 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQ +LG G + +V +YEKG++ + +++VL P+++F Sbjct: 15 RLKEAREKAGISQRRLGIEAGMDEFVASTRVNRYEKGIHEPDEATAVKLAQVLNIPLAYF 74 Query: 74 FDVSPTVCS 82 + + Sbjct: 75 YADDDRLAE 83 >gi|218898949|ref|YP_002447360.1| immunity repressor protein [Bacillus cereus G9842] gi|218543383|gb|ACK95777.1| immunity repressor protein [Bacillus cereus G9842] Length = 144 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 6/89 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q+ L + + T + YE G + L+ ++ VL + Sbjct: 4 QRLKEMRKTRKLTQQGLADKVNTTKGTISNYENGHSTPSNEMLKDLANVLGVTTDYL--- 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + S +N + ++ D + R Sbjct: 61 ---LGREDESRVSNTLPDLNKKDTRDIAR 86 >gi|126699343|ref|YP_001088240.1| putative transcriptional regulator [Clostridium difficile 630] gi|255100870|ref|ZP_05329847.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306758|ref|ZP_05350929.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|115250780|emb|CAJ68604.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 181 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+N+G++I R +S L + +T + + E+G+ + L+ I+ L P+ Sbjct: 3 DLNLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLF 62 Query: 72 FFF 74 FF Sbjct: 63 TFF 65 >gi|77459530|ref|YP_349037.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383533|gb|ABA75046.1| putative XRE-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 187 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V + +R R MSQ L E G++ + + E G V + L ++E LE S Sbjct: 14 HVSQNVRRLRHAADMSQTALAEKSGVSRRMLVAIEAGEKNVSLTTLDRVAEALEVAFSDL 73 Query: 74 FDVSPTVCSDISSE 87 +E Sbjct: 74 IQAPDNRDPGRINE 87 >gi|30020775|ref|NP_832406.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229127990|ref|ZP_04256973.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|29896327|gb|AAP09607.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228655457|gb|EEL11312.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] Length = 119 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ IR R G++QE+L E + + + E+G + LQ I+ LE Sbjct: 6 KLVGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPD 64 >gi|60594530|pdb|1Y9Q|A Chain A, Crystal Structure Of Hth_3 Family Transcriptional Regulator From Vibrio Cholerae Length = 192 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 11 QIANQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGESSPTIATLWKIASGLEASFSAF 70 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S +++ I T Sbjct: 71 FANDPQLLSSERSFPDDLNXKIHT 94 >gi|322390901|ref|ZP_08064409.1| transcriptional regulator PlcR [Streptococcus parasanguinis ATCC 903] gi|321142414|gb|EFX37884.1| transcriptional regulator PlcR [Streptococcus parasanguinis ATCC 903] Length = 273 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 28 MSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 MSQ +L E GI Q Q+ + E G GA L +++ L+ + +FF+ + Sbjct: 1 MSQRELAE--GICKQGQISRLENGDYTPGADFLYALAQKLKVSMDYFFE------EQVEQ 52 Query: 87 EENNVMDFISTPDGLQLNRYFIQID 111 + + + +F LNR + + Sbjct: 53 KTDELSEFKKLAHIFILNRNYESLK 77 >gi|291528282|emb|CBK93868.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 104 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 49/115 (42%), Gaps = 17/115 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFF 73 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ + Sbjct: 6 VGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADALL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 DV + +++E ++++ + + +++I+ VR++V Sbjct: 66 IDVVTHSVTGVTNELSDMIGKLPKDE----------------QKRILNAVRALVD 104 >gi|289422857|ref|ZP_06424689.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] gi|289156719|gb|EFD05352.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] Length = 215 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++++G++I+ R ++QE+L ++ + + E + + L I ++L + + Sbjct: 35 INMDIGEKIKRLRTGKQLTQEELANRCELSKGFISQVENNLTSPSIATLIDILDILGTNL 94 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 FF S + I+ +++++ + Sbjct: 95 KEFF--SEDLNEKITFKQDDMFE 115 >gi|225860372|ref|YP_002741881.1| hypothetical protein SPT_0383 [Streptococcus pneumoniae Taiwan19F-14] gi|270292145|ref|ZP_06198360.1| conserved domain protein [Streptococcus sp. M143] gi|303255209|ref|ZP_07341283.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|307710486|ref|ZP_07646923.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307711382|ref|ZP_07647800.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|322377106|ref|ZP_08051598.1| conserved domain protein [Streptococcus sp. M334] gi|331265735|ref|YP_004325365.1| putative transcriptional regulator [Streptococcus oralis Uo5] gi|225726800|gb|ACO22651.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|270279673|gb|EFA25515.1| conserved domain protein [Streptococcus sp. M143] gi|302597842|gb|EFL64914.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|307616800|gb|EFN95982.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|307618749|gb|EFN97888.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|321281819|gb|EFX58827.1| conserved domain protein [Streptococcus sp. M334] gi|326682407|emb|CBZ00024.1| putative transcriptional regulator [Streptococcus oralis Uo5] gi|332202241|gb|EGJ16310.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 64 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG+SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|58580009|ref|YP_199025.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622006|ref|YP_449378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713709|ref|ZP_02244916.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] gi|58424603|gb|AAW73640.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365946|dbj|BAE67104.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 66 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|294478948|gb|ADE87513.1| Cro-repressor [Deep-sea thermophilic phage D6E] Length = 67 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 31/55 (56%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+ G++Q+++ + L ++ Q ++ E G +R A L ++++ IS FF Sbjct: 8 KALRVNSGLTQKEVADYLNMSLTQYKRRENGKSRWYADELYRLAKLYNVDISVFF 62 >gi|291522925|emb|CBK81218.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 139 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 + G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S Sbjct: 1 MTFGEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVS 60 Query: 72 FFFDVSPTVCSDISSEENN 90 + + ++ S + N Sbjct: 61 YLMSENEAFITEASEQFGN 79 >gi|153810652|ref|ZP_01963320.1| hypothetical protein RUMOBE_01036 [Ruminococcus obeum ATCC 29174] gi|149833048|gb|EDM88130.1| hypothetical protein RUMOBE_01036 [Ruminococcus obeum ATCC 29174] Length = 137 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VG+ I+ R +GM+Q++LG+ +G + Q+ YE + L I+EV ++ Sbjct: 9 VGQEIKKVRYRMGMTQKELGKLIGKSESQIGAYENASASITLDVLFKIAEVTKT 62 >gi|126727939|ref|ZP_01743764.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126702770|gb|EBA01878.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 211 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 35/83 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L ++ + K E G S LQ ++ L P+ Sbjct: 20 LEVAIGREVRAYRKQQNITVAELSGLTELSIGMLSKIENGNTSPSLSTLQTLANALAVPL 79 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + FF + ++ ++ Sbjct: 80 TAFFRQYEERRQAVHTKAGEGVE 102 >gi|111220943|ref|YP_711737.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a] gi|111148475|emb|CAJ60147.1| Putative HTH-type transcriptional regulator [Frankia alni ACN14a] Length = 498 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEV 65 P + VG+ +R R G++Q++L + LG V K E G + S L+HI+ Sbjct: 12 RATPASVGVGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVESGRRAIHDISTLRHIARN 71 Query: 66 L 66 L Sbjct: 72 L 72 >gi|125974945|ref|YP_001038855.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125715170|gb|ABN53662.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 142 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R R +SQ+ + + +G+ KYE G ++ +Q ++E + + Sbjct: 7 LRQLRTEKNLSQKDVADAIGVDRTTYTKYETGKSQPDFVTIQKLAEFYSVSVDYL 61 >gi|317473438|ref|ZP_07932732.1| hypothetical protein HMPREF1011_03082 [Anaerostipes sp. 3_2_56FAA] gi|316899088|gb|EFV21108.1| hypothetical protein HMPREF1011_03082 [Anaerostipes sp. 3_2_56FAA] Length = 356 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR R+ G +QE+L LG++ V K+EK + + L ++ VL++ ++ Sbjct: 1 MKINEMIRELRIKKGFTQEQLASLLGVSAPAVNKWEKAASYPDITLLPALARVLDTDLNT 60 Query: 73 F--FDVSPTVCS 82 F PT Sbjct: 61 LLSFKNEPTREE 72 >gi|261400347|ref|ZP_05986472.1| helix-turn-helix protein [Neisseria lactamica ATCC 23970] gi|269209981|gb|EEZ76436.1| helix-turn-helix protein [Neisseria lactamica ATCC 23970] Length = 111 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 44/98 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P++ VG+ + R + G++Q +L E L ++ V + E+G + RL ++E+ Sbjct: 2 VKSPINQTVGRAMAKWRKVSGLTQAQLAERLNLSLDAVSRLERGNIALTVERLVELAEIF 61 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + T D + +++ + + + L Sbjct: 62 GCETADLLGEGSTRVRDQAVRLESLLGRLDEEERVGLL 99 >gi|255655682|ref|ZP_05401091.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451687|ref|ZP_06893419.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296878931|ref|ZP_06902930.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|296259450|gb|EFH06313.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296430044|gb|EFH15892.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 183 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + K + R +S +L E G++ + + EKG + + + I+ L P Sbjct: 2 SINTIIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSNPTVNTIWKIASGLNVP 61 >gi|220962066|gb|ACL93461.1| putative DNA binding helix-turn-helix protein [Acinetobacter baumannii] Length = 94 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 19 IRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+ R + GMSQ +L + +G IT + K EKG + +I++ L P FF Sbjct: 21 LRIARDLRGMSQTELVQKMGNITQAALSKIEKGDIKPSDETKFNIAKTLNFPERFF 76 >gi|168183849|ref|ZP_02618513.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|182673110|gb|EDT85071.1| putative DNA-binding protein [Clostridium botulinum Bf] Length = 148 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q V K+E ++ + +SE+ + Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|157737361|ref|YP_001490044.1| hypothetical protein Abu_1115 [Arcobacter butzleri RM4018] gi|157699215|gb|ABV67375.1| hypothetical protein Abu_1115 [Arcobacter butzleri RM4018] Length = 104 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 3/103 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G++ E+L + + I+ + +Q YE N S + I++ + + Sbjct: 5 RLKEAREKAGLTLEELSKRVNISKRTLQNYESNKNEPTVSIVSKIAKYCFVDEIYLLTGN 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + E +++ +T + + + I +R KI Sbjct: 65 DDIEINYEKEILKILNN-ATKE--EKAYIYYLIKIEHIRNKIF 104 >gi|148380140|ref|YP_001254681.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934013|ref|YP_001384438.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937509|ref|YP_001387974.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|148289624|emb|CAL83727.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152930057|gb|ABS35557.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933423|gb|ABS38922.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 155 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q V K+E ++ + +SE+ + Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|194467259|ref|ZP_03073246.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454295|gb|EDX43192.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 203 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R LG +Q ++ E L +T Q + +E+G + L IS++ + I Sbjct: 7 IKKQRNNLGFTQAEIAEKLHVTRQTISNWEQGKSYPDLDTLVKISDIYKISIDTLLKGDK 66 >gi|20090284|ref|NP_616359.1| transcriptional regulator [Methanosarcina acetivorans C2A] gi|19915282|gb|AAM04839.1| transcriptional regulator, Hth-3 family [Methanosarcina acetivorans C2A] Length = 192 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +IR R M+ E+L E + + +Q+ E G + L I+ L + F Sbjct: 7 VGSKIRHLREAQDMTVEELAEASQSSVELIQQLENGALVPSLTPLLKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDI--SSEENNVMDFISTPD 99 D +P + + NV+ F + Sbjct: 67 DDAPQKGPVVVRAGLSENVVRFSGKTE 93 >gi|78049702|ref|YP_365877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927530|ref|ZP_08188768.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|78038132|emb|CAJ25877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542123|gb|EGD13627.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 66 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|238796839|ref|ZP_04640344.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] gi|238719327|gb|EEQ11138.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] Length = 95 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR++L R+ ++Q LG+ GI +V +YEK + ++ +EVL+ P Sbjct: 2 IGKRLKLARVNAELTQAGLGQRAGIDEESASSRVSQYEKETHAPDFKLVRKFAEVLDVPE 61 Query: 71 SFFFDVSPTVCS 82 ++F+ V + + Sbjct: 62 AYFYAVDDDLAA 73 >gi|328880928|emb|CCA54167.1| putative transcriptional regulatory protein [Streptomyces venezuelae ATCC 10712] Length = 190 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 26/75 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G++ + L G++ + + E+ +++ L I+ D Sbjct: 13 RNLKRWRKERGLTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 72 Query: 77 SPTVCSDISSEENNV 91 I + V Sbjct: 73 EQGPQVRIVPPDQAV 87 >gi|329962680|ref|ZP_08300603.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328529514|gb|EGF56417.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 117 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ ++ R + G +QE++ + +GI YE G V L+ +S + Sbjct: 4 INQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERLSSLFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 F+ + ++I + + D Sbjct: 64 FILFEDNIQADNEIMATAFRISDL 87 >gi|291523377|emb|CBK81670.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 202 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G++I+ R +G++Q+KL E GI ++KYE + +L+ I+ L Sbjct: 1 MTIGEKIKYCRKQIGITQDKLAELTGIHPVSIRKYETNKMQPQPPQLEKIAAALGVS 57 >gi|251790167|ref|YP_003004888.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538788|gb|ACT07409.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 77 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K + G+R++ R+ G+SQE + G+ + E+GV + Sbjct: 2 MLIGMKNTKDITARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIG 61 Query: 61 HISEVLESPISFFFD 75 I++ LE + FD Sbjct: 62 VIADGLEIQLQSLFD 76 >gi|302869114|ref|YP_003837751.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504414|ref|YP_004083301.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302571973|gb|ADL48175.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315411033|gb|ADU09150.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 409 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 8/113 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFF 73 +G+R+ R MSQ+ + LG + V K E+GV R+ S L I+++L+ + Sbjct: 6 IGRRVAYWRSRRKMSQQVFADRLGKSKSWVDKVERGVRRLDKFSVLYEIADILQIDVQLL 65 Query: 74 FDVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P +D + ++ V + + + + +R+ + Sbjct: 66 HGKDPERRTDALNCIDQVEVEEIRTALERYDSMSAYFDAAPYPPPLADMRKAV 118 >gi|239815237|ref|YP_002944147.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801814|gb|ACS18881.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R RM +S +L + GI+ + + E+G+ L+ ++ L P S Sbjct: 7 VRIGTQVRALRMAADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASR 66 Query: 73 FF 74 F Sbjct: 67 LF 68 >gi|229057010|ref|ZP_04196404.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] gi|228720287|gb|EEL71863.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] Length = 107 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ IS VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE-ENNVMDFIST 97 T S + SE V D +S+ Sbjct: 62 LHDETTTESHLDSEWTQLVKDAMSS 86 >gi|94971596|ref|YP_593644.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553646|gb|ABF43570.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 99 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N+G IR R+ G++Q +L + + Q+ + EKG N V S L IS L+ Sbjct: 6 KNIGSLIRAERLRRGLTQTELASHVRMPQSQLSRIEKGAN-VSLSTLAEISRALD 59 >gi|75760672|ref|ZP_00740699.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491853|gb|EAO55042.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 9 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 68 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 69 LHDETTKATNLDSE 82 >gi|325971904|ref|YP_004248095.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027142|gb|ADY13901.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 190 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R ++ L E G++ + + E + + I+ L ++ Sbjct: 7 IGKNIQRIRNSRKLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKIARGLNVELNDLL 66 Query: 75 DVSP 78 D Sbjct: 67 DTDD 70 >gi|309792776|ref|ZP_07687220.1| helix-turn-helix domain protein [Oscillochloris trichoides DG6] gi|308225186|gb|EFO78970.1| helix-turn-helix domain protein [Oscillochloris trichoides DG6] Length = 393 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +++R R+ G+S E L + +G +T Q + KYE+G L I+ L ++ Sbjct: 2 LSQQLRHLRLARGLSLEALAQQMGGLVTKQALSKYEQGKAHPSPLVLNRIAAALGVKVAD 61 Query: 73 FFDVSP 78 S Sbjct: 62 LVQASD 67 >gi|317132318|ref|YP_004091632.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470297|gb|ADU26901.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 373 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +G I R G++QE+L + LGI+ V K+E G + L ++ + Sbjct: 4 IQIGANIASLRKEKGVTQEELADYLGISKPAVSKWESGQSYPDILLLPRLAAYFNRTVD 62 >gi|262199984|ref|YP_003271193.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262083331|gb|ACY19300.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 199 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 3/133 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ R R L ++QE E + ++ + + E+G + I L Sbjct: 7 KTIGRAAREARTALQLTQEDAAERIHVSVEFYARIERGKSLPSIGTFARIVSALGVSADA 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI--VSSE 130 P + + + +P+ +L+R + +R + LV+ I + E Sbjct: 67 LLGARPPIATVAAGMPALWTPPSESPEMRRLSRRLRKARPATLR-LVSLLVKEIESAAGE 125 Query: 131 KKYRTIEEECMVE 143 + E+ VE Sbjct: 126 SQAGESEDGDSVE 138 >gi|255655369|ref|ZP_05400778.1| putative phage repressor [Clostridium difficile QCD-23m63] Length = 118 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFF 73 KR+R R G++Q +LGE +G++ + + YE NR + +++V + + + Sbjct: 4 KRLRELRKEFGLTQRELGEKVGVSQRVLGYYET-ENRFPDEHILNKLADVFDVSVDYL 60 >gi|207857403|ref|YP_002244054.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709206|emb|CAR33539.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 231 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M +L E +G+ + + E G + L +++ L I+ Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLSVDIA 60 Query: 72 FFFDVSPTVC-----SDISSEENNVMDFIS 96 F P SD+ + NV D Sbjct: 61 ELFTSDPKGNTVCKHSDMRKDSANVKDLFR 90 >gi|148976562|ref|ZP_01813258.1| transcriptional regulator, putative [Vibrionales bacterium SWAT-3] gi|145964138|gb|EDK29395.1| transcriptional regulator, putative [Vibrionales bacterium SWAT-3] Length = 108 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEV 65 +D + R++ R +SQ++LG +GI ++ + EKG + S L+ +++ Sbjct: 2 SIDNPIPVRLKEVRKKAKISQKELGVRIGIDESSASARMNQDEKGKHTPDISTLKKMADE 61 Query: 66 LESPISFFF 74 L P+++FF Sbjct: 62 LGVPLNYFF 70 >gi|187476768|ref|YP_784792.1| transcriptional regulator [Bordetella avium 197N] gi|115421354|emb|CAJ47859.1| putative transcriptional regulator [Bordetella avium 197N] Length = 136 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R++ G +Q+ L G++ + YE G R+ + ++ ++ L + + Sbjct: 7 RLRQARVLRGYTQQDLARICGLSQSAIGSYETG-QRLSSRSIRRLALALNVSLDWL---- 61 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ 102 + ++M+ T +G + Sbjct: 62 -EMGQGPMGPAASLMEPPPTREGCE 85 >gi|47566166|ref|ZP_00237194.1| SinR protein [Bacillus cereus G9241] gi|228984453|ref|ZP_04144631.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154947|ref|ZP_04283061.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|229195577|ref|ZP_04322343.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|47556719|gb|EAL15050.1| SinR protein [Bacillus cereus G9241] gi|228587826|gb|EEK45878.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|228628505|gb|EEK85218.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|228775319|gb|EEM23707.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 107 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T + + SE Sbjct: 62 LHDETTKENHLDSE 75 >gi|330943932|gb|EGH46140.1| RtrR protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 133 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RIR +R +SQ+ L I + + E+G + +L I+ VL S Sbjct: 65 LGRRIRTQRKACQISQDALALACNIDRSYMGRIERGEVNITVEKLYRIAGVLACDPS 121 >gi|332288631|ref|YP_004419483.1| hypothetical protein UMN179_00550 [Gallibacterium anatis UMN179] gi|330431527|gb|AEC16586.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 129 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++IRL R + SQE++ E + ++ K E+G R+ +L+ I+++ + IS Sbjct: 5 EKIRLIREMNHWSQEEMAEKMNLSPSGYAKIERGETRLHLDKLEKIAQIFDVDISELLSN 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 +C I+ ++ +G+ Sbjct: 65 DKKICFLINENSQLSSNYYGANEGMA 90 >gi|314939500|ref|ZP_07846732.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314944174|ref|ZP_07850819.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951901|ref|ZP_07854933.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994467|ref|ZP_07859746.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314997871|ref|ZP_07862772.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313588096|gb|EFR66941.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591122|gb|EFR69967.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313595935|gb|EFR74780.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597236|gb|EFR76081.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313641201|gb|EFS05781.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 254 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 9/94 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIRL R LG+S ++ G+ + T V ++E+G++ RL I+++ I++ Sbjct: 8 VGNRIRLVRKELGLSMKEFGKKITPTAADSIVSRWERGISLPNNDRLTQIAKIAHKDINW 67 Query: 73 F----FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F + D N + DF P+ + Sbjct: 68 LLWGTFKEFISSLLDKEGYTNFLNDF---PETVD 98 >gi|313885235|ref|ZP_07818987.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619926|gb|EFR31363.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] Length = 228 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G +++ RR +SQ L L I +E G + + L+H++++L +F Sbjct: 4 GDQLKRRRQERQLSQADLARQLNIARSSYYNWETGKTQPNQANLEHLAKLLLVTPDYFDQ 63 Query: 74 -FDVSPTVCSDISSEENNVMDF 94 + + S+ ++ V+DF Sbjct: 64 DYRLLHPYHQLQSARQDQVVDF 85 >gi|310659876|ref|YP_003937597.1| transcriptional regulator [Clostridium sticklandii DSM 519] gi|308826654|emb|CBH22692.1| putative transcriptional regulator [Clostridium sticklandii] Length = 433 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++ ++L IT Q+ E+ + L++ SE LE+PI +F Sbjct: 6 LGQKIKKLRKEKNLTLKELAGN-RITAAQISHIERDKSYPSQDLLEYFSEKLETPIDYFL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + I+S + + + Sbjct: 65 ESKEAQAKKIASSIILKSEVLFKTE 89 >gi|258615577|ref|ZP_05713347.1| hypothetical protein EfaeD_07687 [Enterococcus faecium DO] gi|293560245|ref|ZP_06676744.1| transcription regulator [Enterococcus faecium E1162] gi|294620833|ref|ZP_06700037.1| transcription regulator [Enterococcus faecium U0317] gi|314947723|ref|ZP_07851130.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|291599618|gb|EFF30631.1| transcription regulator [Enterococcus faecium U0317] gi|291605789|gb|EFF35224.1| transcription regulator [Enterococcus faecium E1162] gi|295113443|emb|CBL32080.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|313645703|gb|EFS10283.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|315030236|gb|EFT42168.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315144773|gb|EFT88789.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315158696|gb|EFU02713.1| helix-turn-helix protein [Enterococcus faecalis TX0312] Length = 71 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 5 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 62 >gi|295401956|ref|ZP_06811918.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975958|gb|EFG51574.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 72 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE+L + LGI+ + + E+G +Q I+E L + Sbjct: 7 GRRIRAFRKLKGYTQERLAKELGISVSTLGEIERGNRLPTEELVQQIAERLNISV 61 >gi|266621706|ref|ZP_06114641.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288866607|gb|EFC98905.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 291 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R M+QE+L E L ++ Q V K+E G + +L I ++ + Sbjct: 6 NLQVLRKRNNMTQEQLAEQLEVSRQAVSKWESGQSYPEMEKLLIICDMFHCDMDSLVKGD 65 Query: 78 PTVCSDISSE 87 T+ + Sbjct: 66 LTLEDQADAA 75 >gi|311743857|ref|ZP_07717663.1| HTH_3 family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312987|gb|EFQ82898.1| HTH_3 family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 80 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +RI + R G+S+ L + +G+ +Q + E+G I+ E P+ F Sbjct: 8 VHQRIAMLRAERGISRRDLADGVGVHYQTIGYLERGEFSPSLHLALSIAAFFEVPVEVVF 67 Query: 75 DVSP 78 + P Sbjct: 68 SLEP 71 >gi|253682587|ref|ZP_04863384.1| helix-turn-helix domain protein [Clostridium botulinum D str. 1873] gi|253562299|gb|EES91751.1| helix-turn-helix domain protein [Clostridium botulinum D str. 1873] Length = 184 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R MS + + + G++ + + E+G + S L I+ L+ S F Sbjct: 8 IGINLKTIRTQKNMSLDTVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVSFSSFI 67 Query: 75 DVSPT 79 D S Sbjct: 68 DDSNE 72 >gi|228994857|ref|ZP_04154652.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764882|gb|EEM13641.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 64 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ GM+Q +L + ++ Q + EKG I + L ++ F Sbjct: 4 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLF 60 >gi|218235129|ref|YP_002366064.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228938496|ref|ZP_04101105.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971375|ref|ZP_04132001.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977987|ref|ZP_04138367.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|229108836|ref|ZP_04238441.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|229149581|ref|ZP_04277813.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|218163086|gb|ACK63078.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228633927|gb|EEK90524.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|228674605|gb|EEL29844.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|228781775|gb|EEM29973.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|228788242|gb|EEM36195.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821233|gb|EEM67249.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939004|gb|AEA14900.1| SinR protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 107 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDETTKETNLDSE 75 >gi|153805880|ref|ZP_01958548.1| hypothetical protein BACCAC_00119 [Bacteroides caccae ATCC 43185] gi|149130557|gb|EDM21763.1| hypothetical protein BACCAC_00119 [Bacteroides caccae ATCC 43185] Length = 191 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ E+L + G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKSLREDKSITIEELAQRSGLAMEQIERIENNIDIPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D V Sbjct: 67 DDQDEVGP 74 >gi|254975373|ref|ZP_05271845.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092763|ref|ZP_05322241.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255314502|ref|ZP_05356085.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517179|ref|ZP_05384855.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650283|ref|ZP_05397185.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683399|ref|YP_003214684.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686995|ref|YP_003218128.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306520257|ref|ZP_07406604.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260209562|emb|CBA63177.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213011|emb|CBE04338.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 181 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+N+G++I R +S L + +T + + E+G+ + L+ I+ L P+ Sbjct: 3 DLNLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLF 62 Query: 72 FFF 74 FF Sbjct: 63 TFF 65 >gi|41057272|ref|NP_958300.1| hypothetical protein VWBp58 [Streptomyces phage VWB] gi|39656095|gb|AAR29746.1| hypothetical protein [Streptomyces phage VWB] Length = 76 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RIR R++ +SQ +L G+ + + + E G++ G L I+ ++ P++ Sbjct: 16 IGARIRDARILTNLSQLELATLAGVDHKTIHRVEYGLSDPGLGLLLQIAHAVDVPLA 72 >gi|42519880|ref|NP_965810.1| hypothetical protein LJ1831 [Lactobacillus johnsonii NCC 533] gi|41584170|gb|AAS09776.1| hypothetical protein LJ_1831 [Lactobacillus johnsonii NCC 533] Length = 161 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++I+ R ++QE++ + L +T Q + +E N + I+E + Sbjct: 5 EQIKRLRKENNLTQEEMAKKLNVTRQTISNWENNRNLPDFEIIILIAETFGVSLD 59 >gi|315180160|gb|ADT87074.1| hypothetical protein vfu_A01915 [Vibrio furnissii NCTC 11218] gi|315181548|gb|ADT88461.1| hypothetical protein vfu_B00214 [Vibrio furnissii NCTC 11218] gi|315181554|gb|ADT88467.1| hypothetical protein vfu_B00220 [Vibrio furnissii NCTC 11218] Length = 173 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+ Q ++ E +G+T Q K+E G N+ A ++ ++E+L S Sbjct: 9 LKRTREAKGLKQAQVAEYVGVTAQTYMKWENGKNQPKADDIKKLAEILGVSES 61 >gi|240146357|ref|ZP_04744958.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] gi|257201519|gb|EEU99803.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] Length = 113 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 15/115 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ RR SQE L +G + + E G +V + L I+ L++ + Sbjct: 8 IGMRIKERRTKKEWSQEMLASTVGNSNPHMSNIEWGKTKVSLATLIDIANALDTTLDALI 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + EE + + + + + + ++V+++V S Sbjct: 68 CDNLVKGKAVFDEEISQELEECSEEDI---------------RIVYDMVKALVKS 107 >gi|218288753|ref|ZP_03493016.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218241111|gb|EED08287.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 82 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R + G+S +L E G++ + E G A++L I+E L +S + Sbjct: 6 QRLRYYRKLRGLSVRELAERAGVSVSYIYAIESGARGSNAAKLGLIAEALGVSLSDLWGD 65 Query: 77 SPTVCSDISSEEN 89 + + + Sbjct: 66 ARPEKGGVPRDPG 78 >gi|332655084|ref|ZP_08420825.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515944|gb|EGJ45553.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 130 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLE 67 D ++G+R++ R ++Q++LG +G + + ++ +YEK A +EVL+ Sbjct: 7 DTSIGQRLKFIRRFRRLTQKELGLRMGYSEKTADVRIAQYEKNARTPNAETTAKFAEVLK 66 Query: 68 SPISFF 73 + F Sbjct: 67 VSPAVF 72 >gi|295133913|ref|YP_003584589.1| hypothetical protein ZPR_2068 [Zunongwangia profunda SM-A87] gi|294981928|gb|ADF52393.1| membrane protein [Zunongwangia profunda SM-A87] Length = 214 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + N+ RI+ R++ G SQE L E G++ + +Q+ E A L+ ++E L I Sbjct: 3 NQNLSNRIKNFRILKGFSQEALAEHSGLSVRTIQRMENNDRIPNADSLKKVAEALGISI 61 >gi|258515463|ref|YP_003191685.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779168|gb|ACV63062.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 116 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G I+ R G+ Q+ + LG+ + K+E G + + L I+ + P+S Sbjct: 6 KTIGANIKELRDNAGLGQKHIAGYLGVDQSLISKFESGERAISSDMLDKIAALFCCPVS 64 >gi|254450572|ref|ZP_05064009.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198264978|gb|EDY89248.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 427 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 12/118 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R R RR+ LG+ Q + + LGI+ + E R+G L ++ VL+ + Sbjct: 5 VLTGTRARNRRIDLGLRQTNVAKALGISGSYLNLIEHNRRRIGGKLLHDLARVLDMDAAL 64 Query: 73 FFD------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIEL 122 D + P + + +V D + L F R++I +L Sbjct: 65 LGDEVGDTILGPLKEAAAAFPHASVEDLRAE----DLVARFPGWAALIAAQRRRITQL 118 >gi|163816403|ref|ZP_02207769.1| hypothetical protein COPEUT_02592 [Coprococcus eutactus ATCC 27759] gi|158448400|gb|EDP25395.1| hypothetical protein COPEUT_02592 [Coprococcus eutactus ATCC 27759] Length = 213 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ M+Q++L + G+ ++ YE G + L +I+ L F+ Sbjct: 9 VGYLIRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVS---FY 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 +S ++I S + + D Sbjct: 66 ALSDPDVANIFSALHVLFDI 85 >gi|148381133|ref|YP_001255674.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153930841|ref|YP_001385508.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937138|ref|YP_001388914.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168179166|ref|ZP_02613830.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|168183501|ref|ZP_02618165.1| DNA-binding protein [Clostridium botulinum Bf] gi|226950613|ref|YP_002805704.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|148290617|emb|CAL84746.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152926885|gb|ABS32385.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933052|gb|ABS38551.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|182669975|gb|EDT81951.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182673310|gb|EDT85271.1| DNA-binding protein [Clostridium botulinum Bf] gi|226843650|gb|ACO86316.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|322807499|emb|CBZ05074.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 189 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ + Sbjct: 2 ID-DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 Query: 71 SFFFDVSP 78 ++FF Sbjct: 61 TYFFQAPK 68 >gi|146301462|ref|YP_001196053.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155880|gb|ABQ06734.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 138 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G++I R + M QE L + LG Q + E + +L +++ L + Sbjct: 9 HIGRKISRIRELKDMKQEALAQALGTNQQAISIMENSET-IEEEKLMEVAKALGVSV 64 >gi|298480154|ref|ZP_06998353.1| DNA-binding protein [Bacteroides sp. D22] gi|298273963|gb|EFI15525.1| DNA-binding protein [Bacteroides sp. D22] Length = 191 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L + G+ +QV++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D V Sbjct: 67 DDQDEVGP 74 >gi|288573106|ref|ZP_06391463.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568847|gb|EFC90404.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 212 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 2/98 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R ++Q++L + +G++ V +EK ++ LE+ S+ Sbjct: 5 GDRIKELRKRKQLTQDQLAQKMGVSRTTVVSWEKSKFEPDRQNTIDLAAALETTTSYLMG 64 Query: 76 --VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P+ + ++ + GL L+ ID Sbjct: 65 ETDDPSPQKADRQVPSGILAPMRQETGLSLDEAAALID 102 >gi|240140512|ref|YP_002964992.1| hypothetical protein MexAM1_META1p4053 [Methylobacterium extorquens AM1] gi|240010489|gb|ACS41715.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 87 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R+ G+SQE+L GI V + E+G V S L+ ++ L P++ Sbjct: 7 IGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPVAHL 65 >gi|238018404|ref|ZP_04598830.1| hypothetical protein VEIDISOL_00230 [Veillonella dispar ATCC 17748] gi|237864875|gb|EEP66165.1| hypothetical protein VEIDISOL_00230 [Veillonella dispar ATCC 17748] Length = 129 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV--NRVGASRLQHISEVLESPIS 71 +G +I R+ L MSQ +L +GI+ + K E G + + L I+E + ++ Sbjct: 28 LGHKIAHIRISLNMSQYELAHHVGISRSYLSKLECGTGISGMSLEILFKIAEAFQIDVA 86 >gi|225019955|ref|ZP_03709147.1| hypothetical protein CLOSTMETH_03914 [Clostridium methylpentosum DSM 5476] gi|224947319|gb|EEG28528.1| hypothetical protein CLOSTMETH_03914 [Clostridium methylpentosum DSM 5476] Length = 127 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K+++ R+ G+ Q ++ E + I + YE L ++ I + Sbjct: 1 MEIAKKLQELRIEKGLKQTEVAEAINIVQSTLANYESNATLPDYPILIKLANFYNVSIDY 60 Query: 73 FFDVSPTVCSDISSEEN 89 D SPT S + EN Sbjct: 61 LLDNSPTKLSWQDAAEN 77 >gi|160883113|ref|ZP_02064116.1| hypothetical protein BACOVA_01081 [Bacteroides ovatus ATCC 8483] gi|237718837|ref|ZP_04549318.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|260173280|ref|ZP_05759692.1| transcriptional regulator [Bacteroides sp. D2] gi|293371883|ref|ZP_06618287.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|315921554|ref|ZP_07917794.1| transcriptional regulator [Bacteroides sp. D2] gi|156111585|gb|EDO13330.1| hypothetical protein BACOVA_01081 [Bacteroides ovatus ATCC 8483] gi|229451969|gb|EEO57760.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292633129|gb|EFF51706.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|295085499|emb|CBK67022.1| transcriptional regulator [Bacteroides xylanisolvens XB1A] gi|313695429|gb|EFS32264.1| transcriptional regulator [Bacteroides sp. D2] Length = 191 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L + G+ +QV++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D V Sbjct: 67 DDQDEVGP 74 >gi|29833680|ref|NP_828314.1| regulatory protein [Streptomyces avermitilis MA-4680] gi|29610804|dbj|BAC74849.1| putative regulatory protein [Streptomyces avermitilis MA-4680] Length = 206 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + L E GI+ + + E G+ + L I+ + P+ Sbjct: 26 VGPRLRRIRKERGATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELV 85 Query: 75 DVSPTVCSDISSEE 88 P + ++ Sbjct: 86 GAPPVSDPRVRAKP 99 >gi|47564457|ref|ZP_00235502.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47558609|gb|EAL16932.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 374 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISID 62 >gi|324993465|gb|EGC25385.1| transcriptional regulator [Streptococcus sanguinis SK405] gi|327458828|gb|EGF05176.1| transcriptional regulator [Streptococcus sanguinis SK1057] Length = 65 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R M+Q L + +G+T Q + E G S I + L + F Sbjct: 6 RLKMARAERDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62 >gi|299144678|ref|ZP_07037746.1| DNA-binding protein [Bacteroides sp. 3_1_23] gi|298515169|gb|EFI39050.1| DNA-binding protein [Bacteroides sp. 3_1_23] Length = 191 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R +S E+L + G+ +QV++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D V Sbjct: 67 DDQDEVGP 74 >gi|261821438|ref|YP_003259544.1| phage repressor [Pectobacterium wasabiae WPP163] gi|261605451|gb|ACX87937.1| putative phage repressor [Pectobacterium wasabiae WPP163] Length = 244 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G+SQ+ LG+ +G++ +QK E G +++ +S L + + Sbjct: 7 ERLKTVRTSQGLSQKALGDMVGVSQAAIQKIEGGKAS-QTTKIVELSNALHIRPEWLANG 65 Query: 77 SPTVCSD 83 + SD Sbjct: 66 EGPMRSD 72 >gi|256785782|ref|ZP_05524213.1| hypothetical protein SlivT_14926 [Streptomyces lividans TK24] Length = 202 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G V ++G R+R R G++ +L GI+ + + E G G L Sbjct: 1 MSGGDDETAQVMTSLGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLL 60 Query: 61 HISEVLESPIS 71 ++ P+ Sbjct: 61 PLARAHRLPLD 71 >gi|326204104|ref|ZP_08193965.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325985871|gb|EGD46706.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 184 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + RI+ R I G++ E L L I+ + + YE G + S L I+ +S Sbjct: 6 RLIASRIKELREISGITVEALAAELKISEEAYRSYESGETDIPVSFLYQIANKFNVELS 64 >gi|228962124|ref|ZP_04123604.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797560|gb|EEM44693.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 108 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 35/80 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R ++Q+ + + LGI + ++E G + + + ++ + + + Sbjct: 5 GQRLKDLRREKKLTQQDIADVLGIEKSNISRFESGKQSLSSENIIKTAKYFDVSVDYILG 64 Query: 76 VSPTVCSDISSEENNVMDFI 95 +S + EE D + Sbjct: 65 ISDYKTINKKKEEQIPKDVV 84 >gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176] gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176] Length = 209 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 R++ R SQ ++ LG+T Q V K+E G + + ++E+L++ Sbjct: 5 RLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRSTPDPQTVARLAEILDT 55 >gi|212696766|ref|ZP_03304894.1| hypothetical protein ANHYDRO_01308 [Anaerococcus hydrogenalis DSM 7454] gi|212676265|gb|EEB35872.1| hypothetical protein ANHYDRO_01308 [Anaerococcus hydrogenalis DSM 7454] Length = 116 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + +R M+Q+ + E L ++ Q V K+E+G + S L ++++L+ + + Sbjct: 10 GEFVCKKRKEKNMTQKDIAEKLYVSVQAVSKWERGKSLPDISLLMPLAKILDVKLVNLLE 69 Query: 76 VSPTVCSDISSEEN 89 D EN Sbjct: 70 AREEKTEDSQKIEN 83 >gi|254389389|ref|ZP_05004617.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294817070|ref|ZP_06775712.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445868|ref|ZP_08220602.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703104|gb|EDY48916.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321885|gb|EFG04020.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 246 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G++ L G++ + + E G R L ++ P+ Sbjct: 13 VGPRLRALRRDRGITLADLATTTGVSESTLSRLENGQRRPTLELLLPLARTYNVPLDDL 71 >gi|184155136|ref|YP_001843476.1| hypothetical protein LAF_0660 [Lactobacillus fermentum IFO 3956] gi|183226480|dbj|BAG26996.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956] Length = 104 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RI R MSQ +L + L I + YE + L+ +++ + F Sbjct: 1 MNIGERIAQLRKSRSMSQFQLAKTLNIATSTLGMYETNKRKPNMEMLEKLADFFGVSVDF 60 Query: 73 FF---DVSPTVCSDISSEEN 89 + +D++ ++ Sbjct: 61 LLGRPEKDDLKTADLADDDT 80 >gi|168217416|ref|ZP_02643041.1| transcriptional regulator [Clostridium perfringens NCTC 8239] gi|182380504|gb|EDT77983.1| transcriptional regulator [Clostridium perfringens NCTC 8239] Length = 141 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R +SQE+L + L I+ Q + K+E G L + ++ + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIENLILLRKIFGVSLD 59 >gi|160947244|ref|ZP_02094411.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] gi|158446378|gb|EDP23373.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] Length = 180 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++I+ R ILG++QE+L E +T + + E+G+ S L+ + E L + IS Sbjct: 1 MDIGEKIKNLRTILGLTQEELAERAELTKGFISQLERGLTSPSISSLEDVLEALGTNIS 59 >gi|222054124|ref|YP_002536486.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563413|gb|ACM19385.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 196 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R + ++L + G++ + + E + L I++ L+ I +FF Sbjct: 13 LGEKIRKLRQEQRHTLQELADVTGLSKPLLSQIENDQVTPPLATLLRIAKGLKVGIHYFF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 + EE + F+ T G Sbjct: 73 E-----------EEGDRQKFVLTRGG 87 >gi|19908850|gb|AAM03020.1|AF472611_1 regulatory protein C.BcnI [Brevibacillus centrosporus] Length = 74 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+++R+ R G++QEKL E G+ + E+G + + ++ I+ L+ I F Sbjct: 9 GRKVRIIREQKGLTQEKLAEEAGLHRTYISSLERGERSISLNNIEKIARALDVEIYQLF 67 >gi|298206777|ref|YP_003714956.1| transcriptional regulator [Croceibacter atlanticus HTCC2559] gi|83849409|gb|EAP87277.1| transcriptional regulator [Croceibacter atlanticus HTCC2559] Length = 240 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R SQ+ + E L I+ E N V + +S++ + F Sbjct: 4 IGQRIKSLRKEKKYSQQFIAEKLNISQSAYSLIESAHNNVMIGHVLTLSKLYDVSTDF 61 >gi|325168260|ref|YP_004277301.1| XRE family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325052939|dbj|BAJ83272.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 73 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G++++ R+ G +QE+L E G+ + E+G +G L I+ L P + Sbjct: 10 GRKVKQLRLAKGWTQEELAEHTGLHPTYIGGVERGERNLGLDNLLKIARALGEPPA 65 >gi|313898304|ref|ZP_07831841.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956686|gb|EFR38317.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 180 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQ--QVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R++ R M+++++G+ +GI + ++ YE G L ++E L+ S+ Sbjct: 4 LGYRLKKVRKARRMTRKEIGDLIGINYADTRLDAYETGKTYPREKMLNKLAEALDVSSSW 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + S EE + + P + +Y+ Q D R K Sbjct: 64 LATGELDDKTVKSLEEKGIFYVVFKPFS-EEIKYYYQYTDFLARNK 108 >gi|310815538|ref|YP_003963502.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] gi|308754273|gb|ADO42202.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] Length = 214 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G RIR R G++ ++L + G++ + + E+ L +++VL+ I F Sbjct: 30 GSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAVPSLGSLARLAQVLQVDIDHF 87 >gi|282866034|ref|ZP_06275082.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559073|gb|EFB64627.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 191 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V KRIR R G S + L ++ + + E G R+ +L I+ L + Sbjct: 7 DLDSLVRKRIRALRAAHGWSLDDLAARCHLSPSTLSRIETGHRRIALDQLTVIARALSTS 66 Query: 70 ISFFFDVSPT 79 + + +P Sbjct: 67 LDQLVEAAPD 76 >gi|258515642|ref|YP_003191864.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779347|gb|ACV63241.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 125 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R + E+L E +G+ + + YEK ++ L ++ + + Sbjct: 5 GERLYQLRKSKNLKAEELAEFVGLKRRIIFLYEKNESKPSYDTLILFADFFNVSLDYLVG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 S +S+ + +F S ++ +VRQ + ++++ Sbjct: 65 RSDNPQRILSALSITLDEFFSDDSAPEML--------PEVRQIVNKVIK 105 >gi|228996463|ref|ZP_04156103.1| Helix-turn-helix repressor protein [Bacillus mycoides Rock3-17] gi|229008187|ref|ZP_04165710.1| Helix-turn-helix repressor protein [Bacillus mycoides Rock1-4] gi|228753084|gb|EEM02599.1| Helix-turn-helix repressor protein [Bacillus mycoides Rock1-4] gi|228763293|gb|EEM12200.1| Helix-turn-helix repressor protein [Bacillus mycoides Rock3-17] Length = 64 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFDVSP 78 R LG+SQEKL E LG++ Q + EKG I++ ++ I F ++ Sbjct: 3 EYRKKLGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIENVFIYEGKE 62 Query: 79 TV 80 Sbjct: 63 RE 64 >gi|255038652|ref|YP_003089273.1| helix-turn-helix domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951408|gb|ACT96108.1| helix-turn-helix domain protein [Dyadobacter fermentans DSM 18053] Length = 85 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V + IR R +QE L LGI+ K E R+ RL I+++L+ Sbjct: 10 RAVARNIRKIREYRDYTQEYLAMKLGISQNAYSKIELAYTRITLERLIQIAQILDVD 66 >gi|254474601|ref|ZP_05087987.1| DNA-binding protein [Ruegeria sp. R11] gi|214028844|gb|EEB69679.1| DNA-binding protein [Ruegeria sp. R11] Length = 189 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P P +G +R R ++ L LG + + + E+ + S L+ I+ Sbjct: 2 TDQSPQP--ATLGADLRALRKSRSLTLTDLAARLGRSVGWLSQVERDKSEPSISDLRAIA 59 Query: 64 EVLESPISFFFDVSPTVCSD 83 + L+ P+S F S + + Sbjct: 60 KCLDVPMSMLFAHSASPADE 79 >gi|152964475|ref|YP_001360259.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151358992|gb|ABS01995.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 194 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 3/96 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D + +RIR R+ G S + L ++ + + E G R+ +L ++ L Sbjct: 1 MEQDIDAIIRQRIRGLRLAKGWSLDALAARCFMSPSTLSRIETGHRRIALDQLVPLARAL 60 Query: 67 ESPISFFFDV---SPTVCSDISSEENNVMDFISTPD 99 ++ + D V ++ V ++ + + Sbjct: 61 DTTLDDLVDSGAEDDVVIRPLAEHRPGVTTWLLSRE 96 >gi|39998413|ref|NP_954364.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39985360|gb|AAR36714.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298507358|gb|ADI86081.1| helix-turn-helix transcriptional regulator, LexA-related [Geobacter sulfurreducens KN400] Length = 212 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R GM+Q+ + LGI + E+G + + + +++ Sbjct: 12 LGGRIRKLRQARGMTQKAFADSLGIVQGFLSSIERGRKVPSDTLVIALCRTYGVNVTWLL 71 Query: 75 DV 76 Sbjct: 72 QG 73 >gi|324020380|gb|EGB89599.1| helix-turn-helix protein [Escherichia coli MS 117-3] Length = 153 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++E L Sbjct: 1 MKKSLRILFGQRVKELRIATGMSQEAFADLCGFARSYLSRIERGGSNASLDAIEVLAEAL 60 Query: 67 ES 68 Sbjct: 61 SV 62 >gi|295704387|ref|YP_003597462.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294802046|gb|ADF39112.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 297 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+ I+ R I M+ +L E + T +++ ++E+G + L H+S+ L P+++ Sbjct: 5 KQVGQLIQDLRKIAEMTTVELSEGI-CTEEELHRFEQGEIHASSEVLYHLSKRLGVPMNY 63 Query: 73 FFDVSPTVCSDISSE 87 FF+ +D S E Sbjct: 64 FFEAGELTPNDYSKE 78 >gi|291537143|emb|CBL10255.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 86 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV--NRVGASRLQHISEVLESPISF 72 +G I R + G+SQ KL E +GI+ + E V L I++ L+ P Sbjct: 12 IGLNIAYFRKLKGISQMKLAETIGISRTHMSNIEAPNMPTSVSLETLMDIADALDIPAYV 71 Query: 73 FFDVSPTVCSDISS 86 V D S Sbjct: 72 LLSFHSDVEIDTPS 85 >gi|262191222|ref|ZP_06049420.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT 5369-93] gi|262032888|gb|EEY51428.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT 5369-93] Length = 181 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S ++ Sbjct: 69 FANDPQLLSSERSFPDDP 86 >gi|257871444|ref|ZP_05651097.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257805608|gb|EEV34430.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 121 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 9/88 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-- 72 +G+R++ R+ + +Q+++ + LGIT +E N + ++E+ + Sbjct: 13 LGERLKALRIGMNQTQQQIADHLGITRAAYSHFENDRNEPDGETIVKLAELFHVSTDYLL 72 Query: 73 -------FFDVSPTVCSDISSEENNVMD 93 F S V + + + NV D Sbjct: 73 GRHAIDNFTQPSKRVQTVAAHIDENVTD 100 >gi|228899959|ref|ZP_04064198.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] gi|228964335|ref|ZP_04125453.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228795344|gb|EEM42833.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859670|gb|EEN04091.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] Length = 107 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDETTKATNLDSE 75 >gi|254428879|ref|ZP_05042586.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] gi|196195048|gb|EDX90007.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] Length = 119 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 3/107 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ LGM+QE+LG L +T + +E G + G L + VL + Sbjct: 15 ERLKAARLALGMTQEQLGFELEVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDHLI-C 73 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 V + + + QL + + ++ VK RQ ++ ++ Sbjct: 74 GDQVEGASELKSKYDAQVRNDAEA-QLLKGYRRL-SVKRRQGLLAMI 118 >gi|168186931|ref|ZP_02621566.1| putative phage related transcriptional regulator [Clostridium botulinum C str. Eklund] gi|169295256|gb|EDS77389.1| putative phage related transcriptional regulator [Clostridium botulinum C str. Eklund] Length = 122 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KR++ R + ++Q++L E +G++ + E G + +++ + ++F Sbjct: 4 ISKRLKESRTEVNLTQQQLAEKIGVSTSIIGDIESGRRVASKKTAKKLADFFNTNSEYWF 63 Query: 75 D 75 D Sbjct: 64 D 64 >gi|154685684|ref|YP_001420845.1| Xre [Bacillus amyloliquefaciens FZB42] gi|154351535|gb|ABS73614.1| Xre [Bacillus amyloliquefaciens FZB42] Length = 112 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 2 IGGRLKSLRGKK--TQEEVANHIGVSRARYSHYENGRSEPDYDTLQKLADYFKVSTDYLL 59 Query: 75 DVSPTVCSDISSEEN 89 D+ ++ + Sbjct: 60 TGKEPSDEDMFADPD 74 >gi|78060967|ref|YP_370875.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968852|gb|ABB10231.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 193 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 10/115 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L + + GI+ + + E+G+ + L I+ L + +F Sbjct: 17 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGVTVQYFV 76 Query: 75 DVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 D S E+ F + +G QL +++ + R ++ Sbjct: 77 DTPSEERSVCRGEQLRFFGFADSANLFARLTNVSEGRQLEAILVRMPPGQKRSEV 131 >gi|16804446|ref|NP_465931.1| hypothetical protein lmo2408 [Listeria monocytogenes EGD-e] gi|224503444|ref|ZP_03671751.1| hypothetical protein LmonFR_13202 [Listeria monocytogenes FSL R2-561] gi|254831169|ref|ZP_05235824.1| hypothetical protein Lmon1_07403 [Listeria monocytogenes 10403S] gi|255018503|ref|ZP_05290629.1| hypothetical protein LmonF_13781 [Listeria monocytogenes FSL F2-515] gi|16411896|emb|CAD00486.1| lmo2408 [Listeria monocytogenes EGD-e] Length = 67 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R G++Q +L L ++ Q + EKG I++ + P+ F++ Sbjct: 7 VKIIREKKGITQNELAHSLDVSRQTIHAIEKGKYNPSLELSLKIAKFFDLPVEEIFNLEG 66 Query: 79 T 79 Sbjct: 67 E 67 >gi|329941606|ref|ZP_08290871.1| regulatory protein [Streptomyces griseoaurantiacus M045] gi|329299323|gb|EGG43223.1| regulatory protein [Streptomyces griseoaurantiacus M045] Length = 229 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + V VG R+R R G + L E GI+ + + E G+ + L I+ + Sbjct: 41 TDEVLAEVGPRLRRIRKERGATLAALSEATGISVSTLSRLESGLRKPSLELLLPIARAHQ 100 Query: 68 SPIS 71 P+ Sbjct: 101 VPLD 104 >gi|323693921|ref|ZP_08108108.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323502018|gb|EGB17893.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 192 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G +Q +L E L ++ + V K+E G+ S L +S VL I + Sbjct: 7 GALISSLRKEKGYTQRQLAEALHVSDKAVSKWECGLGCPDVSLLGALSSVLGVNIEKILE 66 Query: 76 VSPTVCSDISS 86 S+ Sbjct: 67 GELEPNSEDGG 77 >gi|323486288|ref|ZP_08091614.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323400398|gb|EGA92770.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 192 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G +Q +L E L ++ + V K+E G+ S L +S VL I + Sbjct: 7 GALISSLRKEKGYTQRQLAEALHVSDKAVSKWECGLGCPDVSLLGALSSVLGVNIEKILE 66 Query: 76 VSPTVCSDISS 86 S+ Sbjct: 67 GELEPNSEDGG 77 >gi|313674149|ref|YP_004052145.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312940847|gb|ADR20037.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 214 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+ I+ R + G++Q +L + + ++ + YE+G + +EV + I Sbjct: 5 GENIKKIRSVRGLTQSQLADIIDVSRGVISSYEEGRAEPKIETIIKTAEVFQVTID 60 >gi|296140142|ref|YP_003647385.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028276|gb|ADG79046.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 113 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 7/93 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV------NRVGASRLQHISEVLESPIS 71 R+ R G+SQEKL E G+ Q+ E+ V + S L ++ L+ P + Sbjct: 18 RLLTLRKARGISQEKLAERAGLHRNQISNIERNVSSGDRFSDPHMSTLYRLAAALDVPPA 77 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + S+E++ D +T + L Sbjct: 78 LLLPDADRRVAPRSAEQDG-ADAAATVESSLLV 109 >gi|291528651|emb|CBK94237.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 213 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ M+Q++L + G+ ++ YE G + L +I+ L F+ Sbjct: 9 VGYLIRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVS---FY 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 +S ++I S + + D Sbjct: 66 ALSDPDVANIFSALHVLFDI 85 >gi|238063042|ref|ZP_04607751.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884853|gb|EEP73681.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 199 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R++ R G++ L E GI+ + + E G R L I++ + P+ Sbjct: 15 VGPRLKRLRTQRGVTLTALAEATGISKSTLSRLEGGQRRPSLELLLPIAQAHQVPLD 71 >gi|59713765|ref|YP_206540.1| transcriptional repressor rstR [Vibrio fischeri ES114] gi|59482013|gb|AAW87652.1| transcriptional repressor rstR [Vibrio fischeri ES114] Length = 111 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R ++QE + + I KYEKG ++ +++ IS FFD Sbjct: 4 ERIKELRSSRNLTQEDVANAMKIAKSTYIKYEKGTQSPQLETIEVMAKFYGVDISEFFDE 63 Query: 77 SPTVCSDISSEENNVMDFI--STPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + +++ + + + L I+ + R++ I L + + Sbjct: 64 KKPDLDLQLMSKLELINQLEKDEKESIILM-----IEGLIFRRQNINLSKRLA 111 >gi|15675661|ref|NP_269835.1| hypothetical protein SPy_1834 [Streptococcus pyogenes M1 GAS] gi|71911371|ref|YP_282921.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|13622874|gb|AAK34556.1| hypothetical protein SPy_1834 [Streptococcus pyogenes M1 GAS] gi|71854153|gb|AAZ52176.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] Length = 195 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R +SQEKL E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEKLAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLD 59 >gi|60680282|ref|YP_210426.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|253563871|ref|ZP_04841328.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265765427|ref|ZP_06093702.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|60491716|emb|CAH06472.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|251947647|gb|EES87929.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254811|gb|EEZ26245.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301161810|emb|CBW21351.1| putative DNA-binding protein [Bacteroides fragilis 638R] Length = 89 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +IR RR +LG++Q+ L + I+ + K E G + +L I EVL +S Sbjct: 21 KQIGIQIRQRRKMLGINQQTLADLAQISINTITKIENGEININFQKLYAILEVLGLELS 79 >gi|154248612|ref|YP_001419570.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162697|gb|ABS69913.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 224 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R L ++ L I+ + K E G + LQ IS+ L PI+ F Sbjct: 41 LGVQVRSIRRELDLTVSDLAGAASISVGMLSKIENGQISPSLATLQAISKALNVPITTLF 100 Query: 75 DVSPT 79 Sbjct: 101 SAFEE 105 >gi|119717792|ref|YP_924757.1| hypothetical protein Noca_3570 [Nocardioides sp. JS614] gi|119538453|gb|ABL83070.1| protein of unknown function DUF955 [Nocardioides sp. JS614] Length = 372 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 13/113 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G R+ + R + ++ +L LGI+ + +YEKG R + L I L P FF Sbjct: 16 GTRLTVARRLRRKTKAQLARELGISATAIAQYEKGQARPSSGVLNQICLSLGLPREFFGV 75 Query: 74 ---FDVSPTVCSDI----SSEENNVMDFIS----TPDGLQLNRYFIQIDDVKV 115 + P + ++ + ++ + + + L ++ + V++ Sbjct: 76 SRPLTLLPASGAHFRSLRATPATSREQALAYGELSLELIDLISQYVHLPPVRL 128 >gi|30260266|ref|NP_842643.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42779154|ref|NP_976401.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47525328|ref|YP_016677.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183109|ref|YP_026361.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49479321|ref|YP_034428.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145140|ref|YP_081687.1| transcriptional regulator [Bacillus cereus E33L] gi|65317536|ref|ZP_00390495.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|118475846|ref|YP_892997.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165872558|ref|ZP_02217190.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635071|ref|ZP_02393388.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641513|ref|ZP_02399761.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170688934|ref|ZP_02880136.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707546|ref|ZP_02897999.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177655635|ref|ZP_02936998.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190569001|ref|ZP_03021902.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196036381|ref|ZP_03103778.1| DNA-binding protein [Bacillus cereus W] gi|196041773|ref|ZP_03109063.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047358|ref|ZP_03114571.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206977949|ref|ZP_03238836.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217957651|ref|YP_002336193.1| DNA-binding protein [Bacillus cereus AH187] gi|218901277|ref|YP_002449111.1| DNA-binding protein [Bacillus cereus AH820] gi|222093845|ref|YP_002527894.1| transcriptional regulator [Bacillus cereus Q1] gi|225862128|ref|YP_002747506.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227812749|ref|YP_002812758.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228912814|ref|ZP_04076462.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925328|ref|ZP_04088425.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931577|ref|ZP_04094484.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943881|ref|ZP_04106267.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229015477|ref|ZP_04172476.1| Transcriptional regulator Xre [Bacillus cereus AH1273] gi|229021686|ref|ZP_04178269.1| Transcriptional regulator Xre [Bacillus cereus AH1272] gi|229089206|ref|ZP_04220488.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42] gi|229100872|ref|ZP_04231679.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28] gi|229119737|ref|ZP_04248999.1| Transcriptional regulator Xre [Bacillus cereus 95/8201] gi|229136921|ref|ZP_04265549.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26] gi|229159248|ref|ZP_04287273.1| Transcriptional regulator Xre [Bacillus cereus R309803] gi|229182469|ref|ZP_04309721.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1] gi|229194465|ref|ZP_04321269.1| Transcriptional regulator Xre [Bacillus cereus m1293] gi|229603974|ref|YP_002864727.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254682298|ref|ZP_05146159.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724216|ref|ZP_05186001.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254735477|ref|ZP_05193185.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744621|ref|ZP_05202300.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254756326|ref|ZP_05208355.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762382|ref|ZP_05214224.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|300119170|ref|ZP_07056871.1| DNA-binding protein [Bacillus cereus SJ1] gi|301051813|ref|YP_003790024.1| putative transcriptional regulator [Bacillus anthracis CI] gi|30253587|gb|AAP24129.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42735069|gb|AAS39009.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47500476|gb|AAT29152.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177036|gb|AAT52412.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49330877|gb|AAT61523.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978609|gb|AAU20159.1| probable transcriptional regulator [Bacillus cereus E33L] gi|118415071|gb|ABK83490.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|164711686|gb|EDR17231.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510498|gb|EDR85896.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529545|gb|EDR92295.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127542|gb|EDS96416.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170667158|gb|EDT17919.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172080046|gb|EDT65145.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190559925|gb|EDV13909.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195991011|gb|EDX54982.1| DNA-binding protein [Bacillus cereus W] gi|196021760|gb|EDX60454.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196027393|gb|EDX66010.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206743855|gb|EDZ55275.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217064728|gb|ACJ78978.1| DNA-binding protein [Bacillus cereus AH187] gi|218537235|gb|ACK89633.1| DNA-binding protein [Bacillus cereus AH820] gi|221237892|gb|ACM10602.1| probable transcriptional regulator [Bacillus cereus Q1] gi|225785876|gb|ACO26093.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005378|gb|ACP15121.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228589055|gb|EEK47069.1| Transcriptional regulator Xre [Bacillus cereus m1293] gi|228601049|gb|EEK58617.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1] gi|228624263|gb|EEK81064.1| Transcriptional regulator Xre [Bacillus cereus R309803] gi|228646586|gb|EEL02792.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26] gi|228663762|gb|EEL19340.1| Transcriptional regulator Xre [Bacillus cereus 95/8201] gi|228682550|gb|EEL36620.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28] gi|228694169|gb|EEL47850.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42] gi|228739622|gb|EEL90035.1| Transcriptional regulator Xre [Bacillus cereus AH1272] gi|228745820|gb|EEL95823.1| Transcriptional regulator Xre [Bacillus cereus AH1273] gi|228815838|gb|EEM62073.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828129|gb|EEM73856.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834375|gb|EEM79915.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846874|gb|EEM91878.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268382|gb|ACQ50019.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|298723492|gb|EFI64233.1| DNA-binding protein [Bacillus cereus SJ1] gi|300373982|gb|ADK02886.1| probable transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324324065|gb|ADY19325.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+RIR R + G +QE + LG++ + + E+G + +++ L+ I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSID 62 >gi|325661078|ref|ZP_08149705.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085193|ref|ZP_08334279.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472585|gb|EGC75796.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407976|gb|EGG87466.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 195 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLISLSNIFNVSLDN 60 Query: 73 FFDVSPTVCSDI 84 F +I Sbjct: 61 FIKEDIKEMREI 72 >gi|302336146|ref|YP_003801353.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319986|gb|ADK68473.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 324 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ RI R +LGM+Q L + LG++ + V ++E+GV + L+ ++ L+ +S Sbjct: 4 KSLSSRISSHRRVLGMTQAALAQMLGVSDKAVSRWERGVGFPDVTLLEPLATALQIDLSE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 V + D + D Sbjct: 64 LVIGPCEVGACTEDAHTETADAEESND 90 >gi|261381037|ref|ZP_05985610.1| transcriptional regulator, Cro/CI family [Neisseria subflava NJ9703] gi|284796072|gb|EFC51419.1| transcriptional regulator, Cro/CI family [Neisseria subflava NJ9703] Length = 228 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R G+SQ L + LG++ + E G N+ + L I++ L+ + Sbjct: 7 RLREARRNKGLSQAGLSKLLGVSQASIAAIEAGRNK-RPTNLVSIAKALDVSPYWL 61 >gi|192291255|ref|YP_001991860.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192285004|gb|ACF01385.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 207 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG +R R+ G S E+L + G++ + + E G + L ++ L P Sbjct: 26 VGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVP 80 >gi|148994361|ref|ZP_01823604.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|289168600|ref|YP_003446869.1| transcriptional regulator [Streptococcus mitis B6] gi|293364230|ref|ZP_06610956.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307702415|ref|ZP_07639371.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315611783|ref|ZP_07886705.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|322375921|ref|ZP_08050432.1| conserved domain protein [Streptococcus sp. C300] gi|147927292|gb|EDK78325.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|288908167|emb|CBJ23009.1| transcriptional regulator [Streptococcus mitis B6] gi|291317076|gb|EFE57503.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307623997|gb|EFO02978.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315316198|gb|EFU64228.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|321279189|gb|EFX56231.1| conserved domain protein [Streptococcus sp. C300] Length = 64 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG+SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|149001557|ref|ZP_01826530.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|149006084|ref|ZP_01829813.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74] gi|168490030|ref|ZP_02714229.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|168494685|ref|ZP_02718828.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|182683306|ref|YP_001835053.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|221231212|ref|YP_002510364.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|237649376|ref|ZP_04523628.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI 1974] gi|237821593|ref|ZP_04597438.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI 1974M2] gi|298230655|ref|ZP_06964336.1| putative DNA-binding protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|147760015|gb|EDK67004.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147762440|gb|EDK69401.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74] gi|182628640|gb|ACB89588.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|183571579|gb|EDT92107.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|183575410|gb|EDT95938.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|220673672|emb|CAR68163.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|327390749|gb|EGE89089.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332075179|gb|EGI85649.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332076774|gb|EGI87236.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 64 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG+SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|312873901|ref|ZP_07733939.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311090577|gb|EFQ48983.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] Length = 199 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + V +R++ R I +Q++ E LGI + YE G N L I++ + Sbjct: 3 NRTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCSVSLD 62 Query: 72 FF 73 + Sbjct: 63 WL 64 >gi|311033076|ref|ZP_07711166.1| hypothetical protein Bm3-1_21479 [Bacillus sp. m3-13] Length = 68 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R M+QE L +G++ Q + E G +IS+V + I F + Sbjct: 3 NRIKDLRKAAKMTQEDLAVQVGVSRQSIIAIESGKYNPSLELAYNISKVFDCIIEEVFIL 62 Query: 77 SPTVCS 82 Sbjct: 63 EEGGEE 68 >gi|296394145|ref|YP_003659029.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181292|gb|ADG98198.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 258 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 9/96 (9%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS---- 77 R+ G++Q L E LG + +E+G + V ++ + L + FD Sbjct: 80 LRLAAGLTQIDLAEKLGTNKSMISVWERGKSAVPNEKVVQYATALGVSVGDVFDAIAAVV 139 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 P +++E + + + G NRYF Sbjct: 140 PAEFVGFTNDEVRIGELLV--GG---NRYFYAASPD 170 Score = 43.6 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +R R+ G++ +L L ++ + V +E G+ + A L ++ + S I+ Sbjct: 10 GVALRRARIASGLTTAELAHKLHVSVEAVYHWETGITQPSAKNLPKVAAAVNSSIADL 67 >gi|293396430|ref|ZP_06640708.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421219|gb|EFE94470.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 185 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R LG+SQ ++ E G+T + E+ S LQ + V +S FF Sbjct: 9 GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSAFFA 68 Query: 75 DVSPTVCSDISSEENNVMDF 94 + I E+ ++++ Sbjct: 69 EPDKPAEPQIVIEQADLIEI 88 >gi|271964933|ref|YP_003339129.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508108|gb|ACZ86386.1| transcriptional regulator protein-like protein [Streptosporangium roseum DSM 43021] Length = 489 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 5/133 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G+R+R R G++ LGE + Q+ E G S L+ ++ L P+ Sbjct: 19 IAFGQRLRHLRKQRGLTLSDLGERVSRAPSQLSLLENGKREPKLSLLKSLATALNVPVEE 78 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--DGLQLNRYFIQID-DVKVRQKIIELVRSIVSS 129 + S + E + + P GL L R + V + I+ L + S Sbjct: 79 L--LRRQAPSRRAQLEMALEEAQRDPLYAGLGLARLKVSARVPNDVLEHILGLYGELRSR 136 Query: 130 EKKYRTIEEECMV 142 + K EE V Sbjct: 137 QAKGTATPEEARV 149 >gi|260880974|ref|ZP_05403308.2| repressor protein C2 [Mitsuokella multacida DSM 20544] gi|260850090|gb|EEX70097.1| repressor protein C2 [Mitsuokella multacida DSM 20544] Length = 141 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 11/111 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +++G IR RR L ++Q KLG+ + Q + +E G + L +++ L I Sbjct: 10 MSIGDNIRKRRKELKLTQTKLGQMVHKCSQVISNWEGGYTTGITIEDLIALADALRISIL 69 Query: 72 FFF----DVSPTVCSDISSEENN------VMDFISTPDGLQLNRYFIQIDD 112 D S + + +S E + V + I+ LQL + +D+ Sbjct: 70 SLIPYVKDDSNSYREEQASFETDYINTTKVAENITNKRLLQLINEYPHLDE 120 >gi|224543501|ref|ZP_03684040.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM 15897] gi|224523628|gb|EEF92733.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM 15897] Length = 126 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++G+ ++ R+ M+QE + E LG++ Q V K+E G + + L +S + + Sbjct: 54 KSLGESLKENRLRCKMTQEFVAETLGVSRQAVSKWENGTSDPNTTNLIALSRLYKV 109 >gi|167841812|ref|ZP_02468496.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia thailandensis MSMB43] Length = 191 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR L ++ ++ GI+ + + E+G R + L I++ L + Sbjct: 11 VAVSLGNKIRALWQRLKLTLDETATTAGISKPFLSQVERGRARPSITSLVRIAKALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +F D S + F ++ F ++ + Sbjct: 71 QYFIDTPTEAGSVCRGDALQYFQFANS------ASSFARLTN 106 >gi|125717479|ref|YP_001034612.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497396|gb|ABN44062.1| Transcriptional regulator (XRE family), SOS-response transcriptional repressors (RecA-mediated autopeptidases), putative [Streptococcus sanguinis SK36] Length = 225 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ S+F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQESYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|254301853|ref|ZP_04969296.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157811641|gb|EDO88811.1| DNA-binding protein [Burkholderia pseudomallei 406e] Length = 88 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL- 67 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + D + +S+ Sbjct: 68 ---SPAGDAGPPPHGFGAPLSS 86 >gi|328953267|ref|YP_004370601.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453591|gb|AEB09420.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] Length = 180 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R ++QE+L +T + + E+ + L+ I +VL ++ Sbjct: 1 MKIGEKLKRLRQANSLTQEELANRAYLTKGFISQLERDQTSPSIATLKDILDVLGVSLAD 60 Query: 73 FFDVSP 78 FF P Sbjct: 61 FFRDLP 66 >gi|324327259|gb|ADY22519.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I+ VL S I F F+ Sbjct: 6 KIKEYRAKLNMTQEDLAKQVGVRRETINHLEKGKYNPSLQLAHDIARVLHSTIDEVFIFE 65 Query: 76 VS 77 Sbjct: 66 DE 67 >gi|332654987|ref|ZP_08420729.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516330|gb|EGJ45938.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 118 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVL- 60 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 PIS ++P V + M + S P G++ Sbjct: 61 -PISLDTLINPDVSPEDEGATQMKMLYCSCPSGMR 94 >gi|229125204|ref|ZP_04254327.1| Helix-turn-helix domain protein [Bacillus cereus 95/8201] gi|228658251|gb|EEL13968.1| Helix-turn-helix domain protein [Bacillus cereus 95/8201] Length = 80 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G R+R R ++QEKL + L + + E G R+ A ++ ++ L I+ Sbjct: 1 MTFGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSIN 60 Query: 72 -FFFDVSPTVCSDISSEEN 89 FF + + +EE Sbjct: 61 ELFFAQNVVEMTTDETEER 79 >gi|167751298|ref|ZP_02423425.1| hypothetical protein EUBSIR_02284 [Eubacterium siraeum DSM 15702] gi|167655805|gb|EDR99934.1| hypothetical protein EUBSIR_02284 [Eubacterium siraeum DSM 15702] Length = 131 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFF 73 +++ R G++Q++ + LG++ + + YEKG + + ++E+L I++ Sbjct: 6 KVKKERRAKGLTQQQFADILGVSLRTITNYEKGESYPKQREIYGKMAEILGVDINYL 62 >gi|15894244|ref|NP_347593.1| Xre family DNA-binding domain-/TPR repeat-containing protein [Clostridium acetobutylicum ATCC 824] gi|15023861|gb|AAK78933.1|AE007611_1 Xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium acetobutylicum ATCC 824] gi|325508372|gb|ADZ20008.1| Xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium acetobutylicum EA 2018] Length = 434 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++ L + + + Sbjct: 6 LGEKIKARRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAGALNTSVEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + S+ + E + + +T + LN Sbjct: 65 E------SEETQAEKICVYYENTAEAYMLN 88 >gi|75762482|ref|ZP_00742345.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228901189|ref|ZP_04065390.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|74490035|gb|EAO53388.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228858439|gb|EEN02898.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 122 Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IRL R G++QE+L E + + + E+G + LQ I+ LE Sbjct: 9 KLVGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIAVGLEVSP 66 >gi|325954072|ref|YP_004237732.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] gi|323436690|gb|ADX67154.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] Length = 127 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D +G +IR R I +SQ + + L I+ E ++ +L I+ VLE Sbjct: 1 MDTVIGYKIRKVREIKNLSQSYMADKLSISQSSYSDIENCKTKISEEKLNEIARVLEVD 59 >gi|317471753|ref|ZP_07931093.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] gi|316900776|gb|EFV22750.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] Length = 159 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ +R G++Q +L LGIT + V K+E G S + + + L ++ Sbjct: 6 IGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNELV 65 Query: 75 DVSPTVCSDISS-EENNVMDFIST 97 + + E N+ + + Sbjct: 66 AGQDIESTQLPEASEQNMKTMLGS 89 >gi|257791171|ref|YP_003181777.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325832901|ref|ZP_08165574.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475068|gb|ACV55388.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325485766|gb|EGC88230.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 64 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR RR +SQ+KL +G + + + E G VG L I++ L+ + Sbjct: 1 MLLGSAIRERREAQSLSQQKLALMIGSSKSHIWRIESGRVSVGLDDLGRIADALDVQVRD 60 Query: 73 FF 74 F Sbjct: 61 LF 62 >gi|257090409|ref|ZP_05584770.1| predicted protein [Enterococcus faecalis CH188] gi|256999221|gb|EEU85741.1| predicted protein [Enterococcus faecalis CH188] Length = 75 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R L ++Q++L E L ++ ++K E G + + I+E P+ + F Sbjct: 6 KMEREKLKLTQKELAEKLDLSEVYIRKLESGASSPSTKKAVIIAEFFGKPLDYLF 60 >gi|269798723|ref|YP_003312623.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269095352|gb|ACZ25343.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 127 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV--NRVGASRLQHISEVLESPIS 71 +G +I + R+ L MSQ++L +GI+ + K E G + + L I++ + + Sbjct: 28 LGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIAQAFQINVG 86 >gi|206561422|ref|YP_002232187.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037464|emb|CAR53400.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 75 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 16 GKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R+R R +SQE + +G + E G +Q I+E L +S F Sbjct: 12 GARVRQLRKEKTDLSQEAFADKVGFARSYFGRVETGKANPSLDAIQTIAEGLGVEVSALF 71 Query: 75 DVSP 78 + Sbjct: 72 EDDD 75 >gi|167746942|ref|ZP_02419069.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] gi|167653902|gb|EDR98031.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] Length = 159 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ +R G++Q +L LGIT + V K+E G S + + + L ++ Sbjct: 6 IGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNELV 65 Query: 75 DVSPTVCSDISS-EENNVMDFIST 97 + + E N+ + + Sbjct: 66 AGQDIESTQLPEASEQNMKTMLGS 89 >gi|153003797|ref|YP_001378122.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027370|gb|ABS25138.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. Fw109-5] Length = 224 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 3/108 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R G+S E+L G++ + + E G + + L IS L P S Sbjct: 44 VGANLRRLRNQRGLSLERLSHLSGVSRAMLGQIELGQSAPTINVLWKISSALGVPFSALI 103 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + E + + DG +R D+ + R + EL Sbjct: 104 TARGSPGPHVLRAEQ--AKLLRSNDGSFSSRALFPFDEPR-RVEFYEL 148 >gi|114800333|ref|YP_761750.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740507|gb|ABI78632.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 75 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR R G MSQ L E +G+T Q V E G I+ V + I F Sbjct: 9 NRIRELRESHGAMSQAALAEAIGVTRQTVIAIELGKYSPSLESAFRIARVFDLGIEDVFG 68 Query: 76 VSPTVCS 82 P S Sbjct: 69 WQPPPLS 75 >gi|146278343|ref|YP_001168502.1| hypothetical protein Rsph17025_2308 [Rhodobacter sphaeroides ATCC 17025] gi|145556584|gb|ABP71197.1| protein of unknown function DUF955 [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 52/130 (40%), Gaps = 12/130 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R+ LG++Q+ E LG + + + E V A+ + +++ ++ Sbjct: 5 LYAGAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDVTK 64 Query: 73 F---------FDVSPTVCSDISSEENNVMDF-ISTPDGLQLNRYFIQIDDV--KVRQKII 120 D+ + I ++ + D + + L R F+ + + +++ Sbjct: 65 LTTSEAERIVTDMREALADPIFTDSPPLADLRLVASNAPALARAFLDLHRAYRQTHERLA 124 Query: 121 ELVRSIVSSE 130 L ++ E Sbjct: 125 SLDEALGRDE 134 >gi|327441790|dbj|BAK18155.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 194 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 33/56 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+ I R GM+Q+++ + L ++ + + K+E+G+ + L H++ + + PI Sbjct: 6 IGQLIYTLRKGKGMTQKQVADALFLSDRTISKWERGIGCPDITLLPHLAALFDIPI 61 >gi|308173224|ref|YP_003919929.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307606088|emb|CBI42459.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|328553856|gb|AEB24348.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328911289|gb|AEB62885.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens LL3] Length = 112 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +QE++ +G++ + YE G + LQ +++ + Sbjct: 2 IGGRLKSLRGKK--TQEEVANHIGVSRARYSHYENGRSEPDYETLQKLADYFNVSTDYLL 59 Query: 75 DVSPTVCSDISSEEN 89 D+ ++ + Sbjct: 60 TGKEPSDEDLFADPD 74 >gi|300814289|ref|ZP_07094561.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511556|gb|EFK38784.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 67 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I R G++Q+++ +G T Q + K E G++ ++ I+ LE + + Sbjct: 4 NNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEIARFLECGVEELYSF 63 Query: 77 SPT 79 Sbjct: 64 EDD 66 >gi|300172339|ref|YP_003771504.1| helix-turn-helix domain-containing protein [Leuconostoc gasicomitatum LMG 18811] gi|299886717|emb|CBL90685.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG 18811] Length = 246 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R ++Q++ + I++Q V +E + I + + P+++ Sbjct: 1 MTIGDQIKHLRTAHHLTQQEFATKIYISYQSVSNWENHRGYPSTEIMLLIIDTFDLPLNY 60 Query: 73 FFDVSPTVCSD 83 F +D Sbjct: 61 FIAKDIDATTD 71 >gi|229085629|ref|ZP_04217861.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-44] gi|228697709|gb|EEL50462.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-44] Length = 422 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R+ GM+Q +L + + + + E G + +S L+ +S+ L F Sbjct: 1 MQIGERIRQIRIHKGMTQGELVSGI-CSVAYLSRIENGQIKPSSSFLKKVSQKLNVDWDF 59 Query: 73 FFDVSPTVCS 82 D Sbjct: 60 LIDGKNEGIE 69 >gi|227499690|ref|ZP_03929793.1| hypothetical protein HMPREF0077_0428 [Anaerococcus tetradius ATCC 35098] gi|227218287|gb|EEI83546.1| hypothetical protein HMPREF0077_0428 [Anaerococcus tetradius ATCC 35098] Length = 74 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR+ R + +SQ++L + +G++ Q + E +R+ + + I++ + I F Sbjct: 7 NNIRVLRAMKNVSQKELAKAVGVSQQTISTAEN-TSRMSLTTAKKIADYFDVKIDDIF 63 >gi|170761027|ref|YP_001788505.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408016|gb|ACA56427.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 189 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ + Sbjct: 2 ID-DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 Query: 71 SFFFDVSP 78 ++FF Sbjct: 61 TYFFQAPK 68 >gi|170756136|ref|YP_001782824.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121348|gb|ACA45184.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 189 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ + Sbjct: 2 ID-DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 Query: 71 SFFFDVSP 78 ++FF Sbjct: 61 TYFFQAPK 68 >gi|160895159|ref|ZP_02075932.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50] gi|156863193|gb|EDO56624.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50] Length = 273 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 12 DINVGKR-------IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 D+N G R I R GMSQ++L E + +T Q V ++E G L+ +S+ Sbjct: 11 DMNKGGRVMETKNIIFELRTKRGMSQDELAEKIMVTRQAVSRWENGETIPNTDTLKLLSK 70 Query: 65 VLESPIS 71 + I+ Sbjct: 71 EFDVSIN 77 >gi|160895617|ref|YP_001561199.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361201|gb|ABX32814.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 227 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG ++R R G++ +++ E G+ + K E+G + ++ + L+ ++ F Sbjct: 46 VGAKLRKARKERGLTLQQVAESSGLAVSTISKAERGQIALSYEKVLMLGNALDIDMTRLF 105 Query: 75 DVSPTVCSDISSE 87 V + + Sbjct: 106 MVGDAQQAAGDTP 118 >gi|157371454|ref|YP_001479443.1| DNA-binding transcriptional repressor PuuR [Serratia proteamaculans 568] gi|157323218|gb|ABV42315.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 185 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R+ LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSAFF- 67 Query: 76 VSPTVCSDISSEENNVMD 93 + ++E V++ Sbjct: 68 ----AEPEAANEPKVVIE 81 >gi|219669136|ref|YP_002459571.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539396|gb|ACL21135.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 208 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R MSQ L L ++ Q V K+E + +L +SEV + Sbjct: 1 MTLGEKIYELRTKNAMSQGDLANTLEVSRQSVSKWENNTSVPELDKLVKMSEVFSISLD- 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E D + P+GL Sbjct: 60 --ELIRGEKTEKMQRETQSPDISAPPNGL 86 >gi|116751125|ref|YP_847812.1| molybdate metabolism transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700189|gb|ABK19377.1| transcriptional regulator of molybdate metabolism, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 374 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 6/90 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--- 74 ++ R G+SQ +L +G+ Q + E G + +I+ L + F Sbjct: 13 NLKSARKARGLSQSELAGRVGVKRQAIYDMESGRYLPNTALALYIARELGCRVEDLFVLE 72 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGL 101 + P + + N + S + L Sbjct: 73 ESEEEQPVTLVEKAGAANPRVAVASVRERL 102 >gi|325263349|ref|ZP_08130084.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324031742|gb|EGB93022.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 354 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I R GM+QE+L LGI+ V K+E + + L ++ L + + Sbjct: 4 NLGAHIAALRKTKGMTQEQLAAVLGISAPAVSKWETDSSCPDITLLCPLARALGTNLDTL 63 Query: 74 FDVSPTVCSDISSE 87 T+ + +E Sbjct: 64 LQFEETLTDEQIAE 77 >gi|303246038|ref|ZP_07332319.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492434|gb|EFL52305.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 17/103 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+IR R M+QEKL E G++ Q + + E+G + ++ ++ P++ F Sbjct: 9 GKKIRTIRRNRDMTQEKLAELSGLSLQYIGEIERGRRNPSLTSVETLAAAFGIPLAELF- 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVR 116 N+ +F TP+ L+ L R D+ ++R Sbjct: 68 --------------NLDEFKLTPEDLRRILARQIEDADEERLR 96 >gi|282876544|ref|ZP_06285409.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|281294632|gb|EFA87161.1| DNA-binding protein [Staphylococcus epidermidis SK135] Length = 96 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 37/92 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I ++QE+L E ++ + + E ++ EVL + S Sbjct: 1 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF +E + D L+L Sbjct: 61 FFKEPSDEKVLYKKKEQTIYDEYDKRLYLELA 92 >gi|271966030|ref|YP_003340226.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509205|gb|ACZ87483.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 197 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 12/108 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G++ L G++ + + E G R L ++ + P+ Sbjct: 8 VGPRLRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLELLLPLARTYDVPLDDL- 66 Query: 75 DVSPTVCSDISSEENNVMDFIST-------PDGLQLNRYFIQIDDVKV 115 V D ++ F T P G + F I + Sbjct: 67 -VGAPRTGDPRIHLKPILRFGMTFVPLSRRPGG---VQAFKMIIPAQP 110 >gi|270654679|ref|ZP_06222291.1| DNA-binding protein [Haemophilus influenzae HK1212] gi|270317067|gb|EFA28714.1| DNA-binding protein [Haemophilus influenzae HK1212] Length = 81 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR+ R + +SQE + E + ++ K E+G R+ +L I+++ +S D Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLVDND 65 Query: 78 PTV 80 V Sbjct: 66 KGV 68 >gi|269838403|ref|YP_003320631.1| hypothetical protein Sthe_2392 [Sphaerobacter thermophilus DSM 20745] gi|269787666|gb|ACZ39809.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM 20745] Length = 406 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++QE+ LG+T + +E G L ++E+ + ++ Sbjct: 7 LGARLRAAREWAGLTQEEAASALGVTHALISYWENDRRTPGLGHLTRLAEIYGTTVTNLL 66 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 D P + + + Sbjct: 67 D--PAHEEPAGPQPALLFRDLRD 87 >gi|256784548|ref|ZP_05522979.1| hypothetical protein SlivT_08668 [Streptomyces lividans TK24] gi|289768432|ref|ZP_06527810.1| XRE family transcriptional regulator [Streptomyces lividans TK24] gi|289698631|gb|EFD66060.1| XRE family transcriptional regulator [Streptomyces lividans TK24] Length = 290 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 16/135 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G +R R M Q +LGE +G++ V ++E G + +L I+ L+ P+ F Sbjct: 8 GSLVRAVRRRRDMHQRQLGELVGVSGATVARWESGKDFPKGEKLPAIATALDEPLDELFP 67 Query: 75 -DVSPTVCS---DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSS 129 + P + D + I G N R+++ V+ + ++ Sbjct: 68 HEGPPDLQLLRCDAGLSVAEATEIIGASRGPVSNA-------ESGRRRLNASYVKPLAAA 120 Query: 130 EKKYRTIEEECMVEQ 144 Y EEE + Q Sbjct: 121 ---YGVTEEELLAAQ 132 >gi|237733222|ref|ZP_04563703.1| predicted protein [Mollicutes bacterium D7] gi|229383766|gb|EEO33857.1| predicted protein [Coprobacillus sp. D7] Length = 189 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G++I R G+ QE+LG +G+ + ++E ++ L +S++ E + + Sbjct: 1 MNTGEKIHELRKNKGLLQEELGTLIGVDTSVISRWESSQRQIKIEDLTKLSDLFEVSVDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|262200800|ref|YP_003272008.1| transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084147|gb|ACY20115.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 192 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 3/97 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D+ V +RIR R+ G + + L ++ + + E G RV +L I++ L Sbjct: 1 MAQELDVVVRQRIRGLRIAKGWTLDALAARCFLSPSTLSRIETGHRRVALDQLVPIAQAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENN---VMDFISTPDG 100 + + + + I E + V ++ + +G Sbjct: 61 GTTLDQLVEPADDGDVVIRPEPHTAEGVTVWVLSREG 97 >gi|261363946|ref|ZP_05976829.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296314023|ref|ZP_06863964.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] gi|288567969|gb|EFC89529.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296839393|gb|EFH23331.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] Length = 120 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 9/96 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R G S+E+L E GI+ +Q YE G A L + + + Sbjct: 10 KLLGERLKKIRTDNGYSREQLSELFGISRASIQNYENGERSPNADYLVQFYKHFGINLHW 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG---LQLNR 105 + + +D +S+P L L R Sbjct: 70 LLTGNKAAKF------QDFIDSVSSPREEVLLHLAR 99 >gi|207722896|ref|YP_002253330.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2] gi|206588080|emb|CAQ18660.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2] Length = 182 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G + E L E G+T + K E+G++ + ++ L P F Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF-GE 62 Query: 78 PTVCSDIS 85 P S I+ Sbjct: 63 PAAASAIT 70 >gi|168181316|ref|ZP_02615980.1| prolyl aminopeptidase [Clostridium botulinum Bf] gi|237793769|ref|YP_002861321.1| hypothetical protein CLJ_B0515 [Clostridium botulinum Ba4 str. 657] gi|182675351|gb|EDT87312.1| prolyl aminopeptidase [Clostridium botulinum Bf] gi|229264073|gb|ACQ55106.1| conserved domain protein [Clostridium botulinum Ba4 str. 657] Length = 65 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K++++ R+ MSQE+L + +G+ Q + E G + I +VL ++ F Sbjct: 4 KKMKIARIECDMSQEQLADAVGVARQTIGLIEAGKYNPSLNLCISICKVLNKTLNDLF 61 >gi|153826821|ref|ZP_01979488.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] gi|149739342|gb|EDM53588.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] Length = 181 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S +++ Sbjct: 69 FANDPQLLSSERSFPDDL 86 >gi|266622653|ref|ZP_06115588.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288865608|gb|EFC97906.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 195 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ I R G++Q+++ + LGI+ + V K+E+G+ S + +S VL + I Sbjct: 6 VGRLILQFRKEKGLTQQQVADLLGISNKTVSKWERGLGCPDVSLWEGLSTVLGADI 61 >gi|228940885|ref|ZP_04103444.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973814|ref|ZP_04134390.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980403|ref|ZP_04140713.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228779223|gb|EEM27480.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228785839|gb|EEM33842.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818721|gb|EEM64787.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941562|gb|AEA17458.1| ans operon repressor protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 145 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I R +SQ +L + LG + ++ YE+G L+ I++ E + Sbjct: 2 LGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYLL 61 Query: 75 D 75 D Sbjct: 62 D 62 >gi|224372182|ref|YP_002606554.1| helix-turn-helix protein [Nautilia profundicola AmH] gi|223588476|gb|ACM92212.1| helix-turn-helix protein [Nautilia profundicola AmH] Length = 272 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G++I+ R G++ +L G+ + K E+ + + I+EVL P Sbjct: 1 MTLGEKIKFFRENKGLNLSELASRAGVAKSTLFKIEENKTNPTINTIWAIAEVLGVP 57 >gi|238799127|ref|ZP_04642582.1| hypothetical protein ymoll0001_17150 [Yersinia mollaretii ATCC 43969] gi|238717035|gb|EEQ08896.1| hypothetical protein ymoll0001_17150 [Yersinia mollaretii ATCC 43969] Length = 160 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 6/103 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R SQE+L E + + +Q+ E G L I+ VL+ +S + Sbjct: 5 RIRELRQARAWSQEQLAELCSLNVRTIQRIENGEQ-ASLETLSAIAAVLDLKVSELYAPG 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 D ++ + + D ++ F + ++ + +I Sbjct: 64 ANQQQDAPADAVD-QRVLDARDAVENEMAFFR----QLLRAVI 101 >gi|325918054|ref|ZP_08180215.1| transcriptional regulator, XRE family [Xanthomonas vesicatoria ATCC 35937] gi|325535751|gb|EGD07586.1| transcriptional regulator, XRE family [Xanthomonas vesicatoria ATCC 35937] Length = 116 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ++LG G + ++ +YE+G + + +++ L P +F Sbjct: 21 RRLKQARLHTGLSQKELGIRAGLDPHVASPRINQYERGKHEPKLETAERLAQALGIPAAF 80 Query: 73 FF 74 + Sbjct: 81 LY 82 >gi|312897912|ref|ZP_07757326.1| helix-turn-helix protein [Megasphaera micronuciformis F0359] gi|310621007|gb|EFQ04553.1| helix-turn-helix protein [Megasphaera micronuciformis F0359] Length = 125 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 3/84 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 +RIR R MSQ+KL + G + + K E G + ++++ ++ L ++ Sbjct: 6 ERIRRLRQENNMSQDKLAKKTGYTSRSTINKIEAGKIDISRAKIKVFADALGVTPAYLMG 65 Query: 75 -DVSPTVCSDISSEENNVMDFIST 97 + E + + T Sbjct: 66 WEDESEQGYYTDPEVAEYAEELRT 89 >gi|296163497|ref|ZP_06846243.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295886255|gb|EFG66127.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 124 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ + R+ M+QE++ E LG+ + + ++E+G RL ++EV P Sbjct: 15 IGQALARARLDADMTQEQVSEALGVNTETISRFERGHTAPPLFRLFELAEVYGVPPETLI 74 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 D + + +M +S Sbjct: 75 AGGEGRSLDPARDVTALMGNLS 96 >gi|270262720|ref|ZP_06190991.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043404|gb|EFA16497.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 185 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R+ LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSAFF- 67 Query: 76 VSPTVCSDISSEENNVMD 93 + + E V++ Sbjct: 68 ----AEPEAADEPKVVIE 81 >gi|222530280|ref|YP_002574162.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312621353|ref|YP_004022966.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|222457127|gb|ACM61389.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] gi|312201820|gb|ADQ45147.1| helix-turn-helix domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 124 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VDI V +I R+ +SQ++L + LGI+ V K E G L I++ L Sbjct: 33 VDIAV--KIIQYRIKNNLSQKELAQKLGISQAMVSKLESGDYNPTVKMLYEIAKKLG--- 87 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F++ EEN V S+ + L Sbjct: 88 ---FELEIEFREKTEYEENWVE---SSEELLD 113 >gi|167755998|ref|ZP_02428125.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] gi|167703990|gb|EDS18569.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] Length = 291 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R R G SQE+L E L ++ Q V K+E L +S++ E I Sbjct: 1 MSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTIDD 60 Query: 73 FFDVSPTVCSDISSEE 88 T + + + Sbjct: 61 LLKNDLTQHNPTAKQA 76 >gi|163838939|ref|YP_001623344.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952415|gb|ABY21930.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 551 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 13/135 (9%) Query: 9 NPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + +D+ ++G+R+R R M+ + LG + Q+ E G S L +++ L Sbjct: 71 DEIDVISLGRRVRHLRKSANMTLDDLGLMVDAAPSQLSMIENGKREPKLSLLNSLAKSLG 130 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---QKIIELVR 124 I P E + + L L KVR + ++ + Sbjct: 131 VSIEQLLGSEPPSRRAALEIELERAQRGALYESLGL---------PKVRVSSRLSMDALE 181 Query: 125 SIVSSEKKYRTIEEE 139 ++V + + E Sbjct: 182 ALVGLQAELERRLNE 196 >gi|39935673|ref|NP_947949.1| transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39649526|emb|CAE28048.1| possible transcriptional regulator, XRE family, CUPIN domain [Rhodopseudomonas palustris CGA009] Length = 207 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG +R R+ G S E+L + G++ + + E G + L ++ L P Sbjct: 26 VGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVP 80 >gi|25011800|ref|NP_736195.1| hypothetical protein gbs1761 [Streptococcus agalactiae NEM316] gi|77413672|ref|ZP_00789856.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|24413341|emb|CAD47420.1| Unknown [Streptococcus agalactiae NEM316] gi|77160272|gb|EAO71399.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 197 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIYSLLLLSQIFQVSLD 59 >gi|329667149|gb|AEB93097.1| transcriptional regulator, XRE family [Lactobacillus johnsonii DPC 6026] Length = 114 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 3/80 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R G+SQ +L + LGI + YE L I++ + + Sbjct: 4 LGENISNLRKSRGLSQAQLADRLGIATSTLGMYETNKREPSNQTLLLIADFFDKTVD--- 60 Query: 75 DVSPTVCSDISSEENNVMDF 94 ++ S +S E N D Sbjct: 61 ELLGRQTSTHTSTELNYEDL 80 >gi|313106352|ref|ZP_07792591.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310879093|gb|EFQ37687.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 195 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 8 PNPVDI-----NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 PNP + +V +R R+ G+SQE L ++ + + E G V S L I Sbjct: 12 PNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRI 71 Query: 63 SEVLESPISFFFDVSPTVCSDIS 85 + L F D+ +D S Sbjct: 72 AAALGV---LFPDLVQAPATDRS 91 >gi|293401810|ref|ZP_06645951.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304762|gb|EFE46010.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 371 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 29/73 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R ++Q++L +G++ V K+E + L ++ + + Sbjct: 6 LGENIAALRRKANITQDQLANWIGVSKSSVSKWETNTSYPDIIFLPQLATLFNVTVDELM 65 Query: 75 DVSPTVCSDISSE 87 P + + E Sbjct: 66 GYEPQLTQEAIVE 78 >gi|261866843|ref|YP_003254765.1| XRE family transcriptional regulator [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412175|gb|ACX81546.1| transcriptional regulator, XRE family [Aggregatibacter actinomycetemcomitans D11S-1] Length = 70 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK+++ R G+SQE L + + E+G + + I+ L I FF Sbjct: 11 GKKVKELRKQKGLSQEALALLCDLDRSYIGGVERGERNISLINIYKITLALNIDIKDFF 69 >gi|257455556|ref|ZP_05620786.1| phage repressor [Enhydrobacter aerosaccus SK60] gi|257447022|gb|EEV22035.1| phage repressor [Enhydrobacter aerosaccus SK60] Length = 222 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L + G + E G N +++L ++E + + Sbjct: 5 IGSRVKKARKYAGLTQVELAKKSGSKQGAISDLESGRNE-SSTKLVEMAEAMGVSAKWL 62 >gi|300768439|ref|ZP_07078339.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493957|gb|EFK29125.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 133 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 17 KRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R++ R G++QE+L LG+ + YE+G + L I++ + Sbjct: 17 ERLKELRKKEAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDYLLG 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDG 100 + T + ++ DF+ +G Sbjct: 77 KNGTPKWATKKDTIDLKDFLEANEG 101 >gi|218132388|ref|ZP_03461192.1| hypothetical protein BACPEC_00247 [Bacteroides pectinophilus ATCC 43243] gi|217992726|gb|EEC58728.1| hypothetical protein BACPEC_00247 [Bacteroides pectinophilus ATCC 43243] Length = 115 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 1/107 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R LG +Q + E L +++ + E+G +R+ + I + Sbjct: 9 VGDALRTIRNKLGYTQNNMAERLDVSYIHYSQIEQGRHRMSLELMMKIVSEFGIEPNTLL 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY-FIQIDDVKVRQKII 120 + + D E N + + L I ID + R++++ Sbjct: 69 GIDNSKKEDAVCEIENRIKMFKPKEQEYLTSACLIFIDGYEARKEVV 115 >gi|154502561|ref|ZP_02039621.1| hypothetical protein RUMGNA_00374 [Ruminococcus gnavus ATCC 29149] gi|153796753|gb|EDN79173.1| hypothetical protein RUMGNA_00374 [Ruminococcus gnavus ATCC 29149] Length = 136 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 11/116 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R ++Q +L L +T + YE + RL I++ + + S Sbjct: 28 LKELREQNHVTQNQLASHLKLTRSTIAGYETKGTQPDYERLLQIADYFHVSVDYLLTGSE 87 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 T + + + +L ++ + RQ++ E + + K Sbjct: 88 TNGISVPPDSSEY----------RLLCAYLNLSSDS-RQQLFEYTEFLQDQDTKKG 132 >gi|220931592|ref|YP_002508500.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] gi|219992902|gb|ACL69505.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] Length = 301 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R + Q+ L LG+ + YE+ + L +++ I + Sbjct: 6 SRLRSLRKEKKLRQKDLAGALGVAQTTIANYEQNLRFPNQDILNKLADYFNVSIDYL 62 >gi|163940990|ref|YP_001645874.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863187|gb|ABY44246.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 66 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R + M+QE L + +G+ + + EKG I+ L S I F F+ Sbjct: 6 KIKEYRAKVHMTQEDLAKKVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 76 V 76 Sbjct: 66 D 66 >gi|15641970|ref|NP_231602.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590656|ref|ZP_01677990.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|121728635|ref|ZP_01681654.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|147674892|ref|YP_001217496.1| transcriptional regulator [Vibrio cholerae O395] gi|153217017|ref|ZP_01950781.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|153801860|ref|ZP_01956446.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|153819310|ref|ZP_01971977.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|153822466|ref|ZP_01975133.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|227082095|ref|YP_002810646.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|229507941|ref|ZP_04397446.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX 330286] gi|229511823|ref|ZP_04401302.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae B33] gi|229515349|ref|ZP_04404809.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TMA 21] gi|229518960|ref|ZP_04408403.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC9] gi|229607486|ref|YP_002878134.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae MJ-1236] gi|254849056|ref|ZP_05238406.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745280|ref|ZP_05419229.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera CIRS 101] gi|262156005|ref|ZP_06029125.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae INDRE 91/1] gi|262167921|ref|ZP_06035621.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC27] gi|298497998|ref|ZP_07007805.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9656508|gb|AAF95116.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547499|gb|EAX57605.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|121629098|gb|EAX61543.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|124113941|gb|EAY32761.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|124122632|gb|EAY41375.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|126510130|gb|EAZ72724.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|126520042|gb|EAZ77265.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|146316775|gb|ABQ21314.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|227009983|gb|ACP06195.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|227013865|gb|ACP10075.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|229343649|gb|EEO08624.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC9] gi|229348054|gb|EEO13013.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TMA 21] gi|229351788|gb|EEO16729.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae B33] gi|229355446|gb|EEO20367.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX 330286] gi|229370141|gb|ACQ60564.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae MJ-1236] gi|254844761|gb|EET23175.1| transcriptional regulator [Vibrio cholerae MO10] gi|255737110|gb|EET92506.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera CIRS 101] gi|262023648|gb|EEY42349.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC27] gi|262030183|gb|EEY48827.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae INDRE 91/1] gi|297542331|gb|EFH78381.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 181 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S +++ Sbjct: 69 FANDPQLLSSERSFPDDL 86 >gi|313892448|ref|ZP_07826038.1| peptidase S24-like protein [Dialister microaerophilus UPII 345-E] gi|313119130|gb|EFR42332.1| peptidase S24-like protein [Dialister microaerophilus UPII 345-E] Length = 218 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 3/106 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLE 67 N ++ +G+RIR R ++ ++ +G++ VQ+YE G S L ++VL Sbjct: 3 NNINKEIGQRIRKTRKANKLTLLEVAHKMGLSEGNVQRYEIGKIENFALSTLTKFAKVLN 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFIST--PDGLQLNRYFIQID 111 + S + + V + +S P+ + + +I Sbjct: 63 TTPEELLGWVDKEDVTNSFDYSYVDEPVSAGLPENINAIKNLPKIP 108 >gi|308067389|ref|YP_003868994.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681] gi|305856668|gb|ADM68456.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus polymyxa E681] Length = 183 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 38/83 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + K ++ R +S +KL + GI+ + + E+G + + + I+ L+ Sbjct: 4 INLILSKNLKYLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISF 63 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + + P+ + + V++ Sbjct: 64 TALINEPPSDAVVVPKSKVQVLE 86 >gi|288921266|ref|ZP_06415550.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288347356|gb|EFC81649.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 490 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEV 65 P + +G +R R G++Q++L + LG V K E G + S L+HI+ Sbjct: 12 RTTPTSVGIGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARN 71 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L ++P +D E ST + + ++ ++ + I L R+ Sbjct: 72 LGLSPED-VGLAPGGLADRRREPPRG----STVEKVAGSQRAWRLTRDHLNHHRISLARA 126 Query: 126 IVS 128 Sbjct: 127 AAR 129 >gi|237727408|ref|ZP_04557889.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229434264|gb|EEO44341.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 77 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 21/55 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ I R M+Q KL E +G + + E G S I+ L + Sbjct: 17 GQIIEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPKVSTFYRIASALGLNV 71 >gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] Length = 378 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK I R G++QE+LG LG++ + + ++E G S L +SE L+ ++ Sbjct: 6 IGKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNYMPDLSLLIPLSETLDISLN 62 >gi|192291420|ref|YP_001992025.1| phage repressor [Rhodopseudomonas palustris TIE-1] gi|192285169|gb|ACF01550.1| putative phage repressor [Rhodopseudomonas palustris TIE-1] Length = 264 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G SQ+ L + +GI+ ++K E G V + L I++VL + + Sbjct: 33 GNIIRQAREQKGWSQKDLADRVGISQPAIRKIEGGST-VKSKHLPKIAQVLGLDLQHLDE 91 Query: 76 VSPTVCSDISSEENNVMD 93 + + S ++ D Sbjct: 92 SLDQLTNVESQAFSSTGD 109 >gi|254286899|ref|ZP_04961851.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] gi|150423049|gb|EDN14998.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] Length = 181 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S +++ Sbjct: 69 FANDPQLLSSERSFPDDL 86 >gi|91224506|ref|ZP_01259768.1| transcriptional regulator, putative [Vibrio alginolyticus 12G01] gi|91190848|gb|EAS77115.1| transcriptional regulator, putative [Vibrio alginolyticus 12G01] Length = 113 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R +SQ+ LG +G+ ++ +YE+ + L+ I++ L P+++ Sbjct: 9 ARLKHARKQANLSQKALGIRIGMDDSSASARMNQYERERHTPDVKTLKLIADELNVPLNY 68 Query: 73 FF 74 FF Sbjct: 69 FF 70 >gi|328947050|ref|YP_004364387.1| hypothetical protein Tresu_0124 [Treponema succinifaciens DSM 2489] gi|328447374|gb|AEB13090.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 106 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 + ++ R G++QEKL E + ++ + E A + I+ LE P+S F+ Sbjct: 9 QNMKYYRKQAGLTQEKLAEAIDMSTSYIGDMEARERFPSAETIDKIAAALEIPVSLLFNE 68 Query: 76 -VSPTVCSDI 84 SP D Sbjct: 69 RGSPDSLKDT 78 >gi|317501992|ref|ZP_07960176.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896672|gb|EFV18759.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] Length = 102 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+G++I R G+SQ+ ++ Q + +E G + + +S+ + I Sbjct: 1 MNIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISID 59 >gi|300704470|ref|YP_003746073.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299072134|emb|CBJ43466.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 182 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G + E L E G+T + K E+G++ + ++ L P F Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF-GE 62 Query: 78 PTVCSDIS 85 P S I+ Sbjct: 63 PAAGSAIT 70 >gi|296314367|ref|ZP_06864308.1| putative helix-turn-helix protein [Neisseria polysaccharea ATCC 43768] gi|296838924|gb|EFH22862.1| putative helix-turn-helix protein [Neisseria polysaccharea ATCC 43768] Length = 112 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 39/81 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ IR R G +Q++L + + + E G S L+++SE L+ P+S Sbjct: 1 MNISHAIRFLRKQKGWTQQQLADFANTSKSNISNLENGNQGYSESILKYLSEALDCPVSS 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 F ++ ++ ++ N+ D Sbjct: 61 IFLLAESLERQQNNTATNMED 81 >gi|237796640|ref|YP_002864192.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229260795|gb|ACQ51828.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 189 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ + Sbjct: 2 ID-DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 Query: 71 SFFFDVSP 78 ++FF Sbjct: 61 TYFFQAPK 68 >gi|229145225|ref|ZP_04273615.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228638236|gb|EEK94676.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] Length = 113 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ IR R G++QE+L E + + + E+G + LQ I+ LE Sbjct: 2 VGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPD 58 >gi|163841313|ref|YP_001625718.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162954789|gb|ABY24304.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 194 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 ++ +D + +RIR R+ G S + L ++ + + E G R+ +L +++ Sbjct: 4 RMTQDLDAVIRQRIRAARLARGWSLDSLAAKCALSPSTLSRIETGNRRIALDQLVPLAKA 63 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 L + + + I E Sbjct: 64 LGMTLDELVESTDEDSVVIRPEPE 87 >gi|153940942|ref|YP_001392536.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936838|gb|ABS42336.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320522|gb|ADG00900.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 189 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ + Sbjct: 2 ID-DIGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 Query: 71 SFFFDVSP 78 ++FF Sbjct: 61 TYFFQAPK 68 >gi|145299927|ref|YP_001142768.1| DNA-binding transcriptional repressor PuuR [Aeromonas salmonicida subsp. salmonicida A449] gi|142852699|gb|ABO91020.1| transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 187 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 7 IPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 NP+ D ++G+R+ R LG+SQ ++ E G+T + E+ + LQ + V Sbjct: 2 TANPLMDKSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASLQKLLNV 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDF 94 E P+S FF + + +++ Sbjct: 62 YELPLSRFFAEEEGRAPSVVIKAEQLIEL 90 >gi|91772638|ref|YP_565330.1| cupin sensor transcriptional regulator [Methanococcoides burtonii DSM 6242] gi|91711653|gb|ABE51580.1| Protein with helix-turn-helix and cupin domain [Methanococcoides burtonii DSM 6242] Length = 184 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + RI R + + E + E LGI+ ++Y+ G + + AS L IS++L + Sbjct: 6 IEIASRISELRELSDIGLETMAEKLGISVDAYKQYDSGESDIPASMLFEISQILNVDMGL 65 Query: 73 FFDVSPT 79 Sbjct: 66 LLTGEEP 72 >gi|83855136|ref|ZP_00948666.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83842979|gb|EAP82146.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 188 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+ + + R++ R G+S + + + G++ V + E+G + + L +++ Sbjct: 2 TDNPDAILTQLPARLKAARTAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTR 61 Query: 65 VLESPISFFFDVSPTVCS 82 L+ + D +PT Sbjct: 62 ALQVDFAGLLDSAPTPAQ 79 >gi|258591602|emb|CBE67903.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 71 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+++R RR+ L +SQE+L E G+ V E+G + + ++ L+ P+ Sbjct: 10 GQKVRQRRLSLAISQEELAERAGVHRTYVGMIERGEKNITLRNIVKFAKALDMPV 64 >gi|288904825|ref|YP_003430047.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288731551|emb|CBI13106.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 65 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R+ LG+SQ L + +G+ Q V E ++E L++ ++ F Sbjct: 2 NRVREFRLNLGISQLALAKQIGVARQTVNLIENNKYNPSLDLCIKLAEALQTDLNTLF 59 >gi|291087268|ref|ZP_06571878.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] gi|291075626|gb|EFE12990.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] Length = 96 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+ R G++QE+L LG+ + Q V + E G L +S +L Sbjct: 6 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + S ++ ++ +++ +ST Sbjct: 66 YLLMGSEPSKEEVKNDLLSIISELST 91 >gi|224542424|ref|ZP_03682963.1| hypothetical protein CATMIT_01606 [Catenibacterium mitsuokai DSM 15897] gi|224524655|gb|EEF93760.1| hypothetical protein CATMIT_01606 [Catenibacterium mitsuokai DSM 15897] Length = 117 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 51/116 (43%), Gaps = 24/116 (20%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R G++Q++LG +G+ + + +YEKGV+ + + I++ L P++F Sbjct: 14 QRLKAAREDAGLTQKELGMSVGLPQEAAAVRINRYEKGVHDADLATARRIAQSLGVPLAF 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + +D+ +E + +S + R+ + +L + Sbjct: 74 LY-----ADTDVLAEAILTLGLLSKSE---------------QRKAVADLKARLAQ 109 >gi|187940017|gb|ACD39152.1| hypothetical protein PACL_0364 [Pseudomonas aeruginosa] Length = 112 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R G+ QE++ E GI + YE G R+ I+ L Sbjct: 1 MAIGENIRKARERKGLRQEQVAEMAGIPLSTYKNYEHGKQPPPGDRIGAIARTLGVSADE 60 Query: 73 F-FDVSPTVCSD 83 F+ S +D Sbjct: 61 LVFEESERQVAD 72 >gi|331018707|gb|EGH98763.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 118 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G R+R R G +Q++L E +G + +YE+GV L + L+ + Sbjct: 6 AFIGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPA 64 >gi|312140854|ref|YP_004008190.1| transcriptional regulator [Rhodococcus equi 103S] gi|311890193|emb|CBH49511.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 198 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + ++ R MS L + ++ Q + K E+GV + I+ L+ P+ Sbjct: 7 IARNVQRFRNERQMSMGDLAKRADLSKQTLSKIEQGVGNPTVETIDAIATALDVPL 62 >gi|307276551|ref|ZP_07557669.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506661|gb|EFM75813.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 270 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 +D VG RIR R L +S EK G+ +G + V +E+G+N L I+EV Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEV 59 >gi|291531478|emb|CBK97063.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 380 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 7/59 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R+ ++QE+L + LG++ Q V ++E G + L I +S+F Sbjct: 16 LGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGTTYPDITLLPTI-------VSYF 67 >gi|167770416|ref|ZP_02442469.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM 17241] gi|167667423|gb|EDS11553.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM 17241] Length = 112 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 10/115 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQ+ + + LGIT Q YE G + + L ++ + Sbjct: 3 NLKALRESKGVSQQTVADYLGITRQAYGNYETGKRQADYAALLRLAAFFGVSVDALLQPD 62 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 P + + ++ + +G QL + +QK++E+ + ++K Sbjct: 63 PPAQTKELAFDD--FTYAMYEEGKQLTE--------ENKQKLLEMAKFFKQQQEK 107 >gi|21244773|ref|NP_644355.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21110470|gb|AAM38891.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 66 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|230647|pdb|2OR1|L Chain L, Recognition Of A Dna Operator By The Repressor Of Phage 434. A View At High Resolution gi|230648|pdb|2OR1|R Chain R, Recognition Of A Dna Operator By The Repressor Of Phage 434. A View At High Resolution gi|494439|pdb|1PER|L Chain L, The Complex Between Phage 434 Repression Dna-Binding Domain And Operator Site Or3: Structural Differences Between Consensus And Non-Consensus Half-Sites gi|494440|pdb|1PER|R Chain R, The Complex Between Phage 434 Repression Dna-Binding Domain And Operator Site Or3: Structural Differences Between Consensus And Non-Consensus Half-Sites gi|494569|pdb|1RPE|L Chain L, The Phage 434 Or2R1-69 Complex At 2.5 Angstroms Resolution gi|494570|pdb|1RPE|R Chain R, The Phage 434 Or2R1-69 Complex At 2.5 Angstroms Resolution gi|157833619|pdb|1R69|A Chain A, Structure Of The Amino-Terminal Domain Of Phage 434 Repressor At 2.0 Angstroms Resolution Length = 69 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 60 Query: 75 DVSPTV 80 + + Sbjct: 61 NGTSDS 66 >gi|121583517|ref|YP_973943.1| hypothetical protein Pnap_4792 [Polaromonas naphthalenivorans CJ2] gi|120596767|gb|ABM40201.1| protein of unknown function DUF955 [Polaromonas naphthalenivorans CJ2] Length = 395 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR L R GM++ ++ E +G++ + V YEKG S +Q +++ L P +FF Sbjct: 5 KRFSLARRRRGMTKREIAESIGVSERSVSAYEKGDQEPEPSNVQRMTKALNFPEAFFHAA 64 Query: 77 SPTVCS 82 P + Sbjct: 65 DPEELT 70 >gi|332652846|ref|ZP_08418591.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517992|gb|EGJ47595.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 149 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 12/122 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV----LES 68 +++G + R G+SQE + E LG++ Q + K+E + + ++ + L+ Sbjct: 1 MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYHMTLDE 60 Query: 69 PISFFFDVSPTVC--SDISSEENNVMDF--ISTPDGLQLNRYF--IQIDD--VKVRQKII 120 I + FD +S E +D+ + + L Y ++I+D +R+ + Sbjct: 61 LIEYDFDEQQAQQMIDSVSDEAQARIDWNKVWSKKYPVLATYHKTVRINDYAPALREMLT 120 Query: 121 EL 122 +L Sbjct: 121 QL 122 >gi|228994924|ref|ZP_04154702.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764826|gb|EEM13602.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 115 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ I+ R G++QE+L + G++ Q++ +E + L+ ++ + I Sbjct: 5 VGQNIKNFRKSFGLTQEQLSDRTGLSRGQIKNWEVDRHEPDLESLKVLASFFNTSID 61 >gi|218132335|ref|ZP_03461139.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC 43243] gi|291086949|ref|ZP_06344978.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|217992673|gb|EEC58675.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC 43243] gi|291076456|gb|EFE13820.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 204 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV--NRVGASRLQHISEVLESPISFFFD 75 R++ R I +QE+LG+ I+ Q +++YE+G A L +++ L+ + Sbjct: 35 RLKELRNIRNYTQEELGKITNISVQSIRRYEQGRLNEEPSAYNLLQLAKALDVTPEYLLI 94 Query: 76 VSPTVCSDISSEENNVMDF 94 + S + + + Sbjct: 95 GDNNMTSYTEAIKRELKQL 113 >gi|197104892|ref|YP_002130269.1| hypothetical protein PHZ_c1427 [Phenylobacterium zucineum HLK1] gi|196478312|gb|ACG77840.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 416 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++RL R+ G S E++GE +G T Q + + E G + +++ L +F + Sbjct: 54 GEQLRLARLARGYSLEEIGERVGATRQFIHQLETGARSASDDLIAALADELGVTAAFLGE 113 Query: 76 VSPTV 80 P+ Sbjct: 114 PIPST 118 >gi|126699269|ref|YP_001088166.1| putative transcriptional regulator [Clostridium difficile 630] gi|254975298|ref|ZP_05271770.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092688|ref|ZP_05322166.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100793|ref|ZP_05329770.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306676|ref|ZP_05350847.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314426|ref|ZP_05356009.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517102|ref|ZP_05384778.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650208|ref|ZP_05397110.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683328|ref|YP_003214613.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686924|ref|YP_003218057.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306520193|ref|ZP_07406540.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|115250706|emb|CAJ68530.1| Transcriptional regulator, RmlC-type [Clostridium difficile] gi|260209491|emb|CBA63038.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212940|emb|CBE04210.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 183 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + K + R +S +L E G++ + + EKG + + + I+ L P Sbjct: 2 SINTVIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSNPTVNTIWKIASGLNVP 61 >gi|253723068|pdb|1PRA|A Chain A, Determination Of The Nuclear Magnetic Resonance Solution Structure Of The Dna-Binding Domain (Residues 1 To 69) Of The 434 Repressor And Comparison With The X-Ray Crystal Structure Length = 69 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 60 Query: 75 DVSPTV 80 + + Sbjct: 61 NGTSDS 66 >gi|322384426|ref|ZP_08058110.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150734|gb|EFX44196.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 151 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR RR +L ++Q ++ E L + E G +S LQ I+++L++ + Sbjct: 1 MSIGERIRQRRKLLQITQLEIAEQLKMGRSNFGHIENGRVTPSSSDLQKIADILQTNADY 60 Query: 73 FFD-VSPTVCSDISSEENNVMDFISTPDGLQL 103 ++ ++ ++ D L Sbjct: 61 LLGRTDDPSPQGAAAGLKTYPEWATSKDKRDL 92 >gi|312879205|ref|ZP_07739005.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] gi|310782496|gb|EFQ22894.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] Length = 134 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G+ Q++L E +GI+ + + E+G L+ S VL P++ + Sbjct: 5 GSRIREARKARGLEQKELAERMGISAAFLSRIERGERGCSLDLLRRASAVLGCPLAELAE 64 Query: 76 VSPTVCSDISSE 87 +P + Sbjct: 65 ETPRPERQALED 76 >gi|326201808|ref|ZP_08191679.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325988408|gb|EGD49233.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 182 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI V RI+ R++ G ++E++ E LG+ Q + YE + + S L ++E+ + I+ Sbjct: 7 DIAV--RIKGLRLLAGSTEEEVAEQLGVMLAQYKSYENAEDDIPVSLLYELAEIYKVNIT 64 Query: 72 FFFDVSPTVCSDI 84 + DI Sbjct: 65 EILTGTSPKLHDI 77 >gi|124009645|ref|ZP_01694317.1| DNA-binding protein [Microscilla marina ATCC 23134] gi|123984695|gb|EAY24680.1| DNA-binding protein [Microscilla marina ATCC 23134] Length = 85 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ + + R SQ +L + +GIT + +YE+ + I+ LE + + Sbjct: 1 MSFGENVAVERKKKDFSQGELAKQVGITAVTIGRYERDEIKPSIDIATKIANALEVSLDY 60 Query: 73 FFDVSPTVCS 82 S TV Sbjct: 61 LVGNSETVLD 70 >gi|56418607|ref|YP_145925.1| hypothetical protein GK0072 [Geobacillus kaustophilus HTA426] gi|261417572|ref|YP_003251254.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297528447|ref|YP_003669722.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|319765229|ref|YP_004130730.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|56378449|dbj|BAD74357.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374029|gb|ACX76772.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|297251699|gb|ADI25145.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] gi|317110095|gb|ADU92587.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 73 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE+L + LGI+ + + E+G S + I+E L + Sbjct: 7 GRRIRAFRKLKGYTQERLAKELGISVSILGEIERGNRMPSDSLVGQIAERLNISV 61 >gi|85702861|ref|ZP_01033965.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85671789|gb|EAQ26646.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 215 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 35/84 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L ++ + K E G + LQ ++ L P+ Sbjct: 27 LEVAIGREVRAYRKKQNITVAELSNMTELSIGMLSKIENGNTSPSLTTLQTLARALSVPL 86 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + ++ ++ Sbjct: 87 TAFFKEYEERREAVHTKAGQGVEI 110 >gi|330508079|ref|YP_004384507.1| hypothetical protein MCON_2169 [Methanosaeta concilii GP-6] gi|328928887|gb|AEB68689.1| conserved domain protein [Methanosaeta concilii GP-6] Length = 74 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFFD 75 R+R+ R I ++QE+L + +G+T Q V EKG ++++ I F Sbjct: 3 NRVRVYRAINDLTQEELAKKIGVTRQTVLAIEKGKYSPSLDLAFKMAKIFGVKIEEIFIY 62 Query: 76 VSPTVCSDISS 86 P +D+ Sbjct: 63 EDPQEKNDVEG 73 >gi|324996098|gb|EGC28009.1| transcriptional regulator [Streptococcus sanguinis SK678] Length = 386 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R+ S ++ E L ++ Q V KYEKG L+ + + L+ P FFF Sbjct: 8 GARLKEARLFNKKSITQIAEFLNVSKQMVSKYEKGRATPSEESLEILEKKLKFPRDFFFG 67 Query: 76 VSPTVCSDISS 86 S + Sbjct: 68 NDNFSLSSTGT 78 >gi|324994099|gb|EGC26013.1| transcriptional regulator [Streptococcus sanguinis SK678] gi|332366386|gb|EGJ44137.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 71 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|324991744|gb|EGC23676.1| transcriptional regulator [Streptococcus sanguinis SK353] gi|325686944|gb|EGD28968.1| transcriptional regulator [Streptococcus sanguinis SK72] gi|325688753|gb|EGD30762.1| transcriptional regulator [Streptococcus sanguinis SK115] gi|325697682|gb|EGD39567.1| transcriptional regulator [Streptococcus sanguinis SK160] gi|327459306|gb|EGF05652.1| transcriptional regulator [Streptococcus sanguinis SK1] gi|327462426|gb|EGF08751.1| transcriptional regulator [Streptococcus sanguinis SK1057] gi|332362960|gb|EGJ40749.1| transcriptional regulator [Streptococcus sanguinis SK49] gi|332364603|gb|EGJ42372.1| transcriptional regulator [Streptococcus sanguinis SK1059] Length = 71 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|297560849|ref|YP_003679823.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845297|gb|ADH67317.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 198 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +D V +RIR R+ G S E+L + ++ + + E G R+ +L Sbjct: 1 MMPMTQEDGELDGLVRRRIRALRVAQGWSLEELAKRAHLSQSSLSRIENGRRRLALDQLV 60 Query: 61 HISEVLESPISFFFDVSPT 79 ++ L++ + + + Sbjct: 61 TLARALDTTLDQLVETADD 79 >gi|289773956|ref|ZP_06533334.1| transcriptional regulator [Streptomyces lividans TK24] gi|289704155|gb|EFD71584.1| transcriptional regulator [Streptomyces lividans TK24] Length = 200 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 10 DLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTT 69 Query: 70 ISFFFDVSPT 79 + + + Sbjct: 70 LDQLVETADE 79 >gi|282862576|ref|ZP_06271637.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282562262|gb|EFB67803.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 477 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 9/112 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R GM+Q + LGI+ + E+ + AS L I+EV +FF + Sbjct: 14 AKLRRLRREHGMNQVDMARALGISTSYANQIEQSRRPLTASVLLRIAEVFGVDAAFFSEA 73 Query: 77 SP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++E + I+ + + R D V + ++ L R Sbjct: 74 DEDRLAADLRAAIADEACGVAPIAPDEISEAAR-----DHPDVARALVALHR 120 >gi|228962054|ref|ZP_04123549.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797628|gb|EEM44746.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 125 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R +S +LGE LG+ V +E L I++ + + Sbjct: 9 GQRLKELRKNKKLSMRQLGEVLGVKQTNVSNWENVGTEPDYKTLIRIAQFFDVSTDYLI- 67 Query: 76 VSPTVCSDISSEENNVMDFIS 96 + +D S+E + ++ Sbjct: 68 GNSVEFNDNESKEKREIALLA 88 >gi|229008902|ref|ZP_04166256.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] gi|228752339|gb|EEM02013.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] Length = 218 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 39/81 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R +SQ++LGE G++ + V +EKG+ +Q I++ S Sbjct: 1 MSIGKNIKKLRDKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGVIQKIADHFGILKSD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + I + + + Sbjct: 61 IIEDQDSKVTHIRPNQPEIKN 81 >gi|116628615|ref|YP_821234.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116101892|gb|ABJ67038.1| Transcriptional regulator, xre family [Streptococcus thermophilus LMD-9] Length = 170 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEYLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFIS 96 F S + + S E N D +S Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS 90 >gi|313899221|ref|ZP_07832739.1| cupin domain protein [Clostridium sp. HGF2] gi|312955982|gb|EFR37632.1| cupin domain protein [Clostridium sp. HGF2] Length = 177 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++IR R ++ E+L +T + + E+ + S L+ I E L + ++ Sbjct: 1 MDIGQKIRQLRTQNNLTLEELASRSELTKGFLSQVERNLTSPSVSTLEDILEALGTDLAS 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S E+ V + Sbjct: 61 FFKDSKENKVVFKKEDYFVDE 81 >gi|301061892|ref|ZP_07202622.1| cupin domain protein [delta proteobacterium NaphS2] gi|300443996|gb|EFK08031.1| cupin domain protein [delta proteobacterium NaphS2] Length = 182 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 13/121 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G KK D +GKR+ R ++ + LG G+ + + + EKG S + Sbjct: 1 MAGIKK-----DQPIGKRLMKLRKEKKLTLKHLGNETGLNPRFISRVEKGEVMPPVSVIL 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE------ENNVMDFISTPDGLQL-NRYFIQIDDV 113 +S LE S + S+E E+ + + TP+ + F D Sbjct: 56 QLSRALEVDSSLLLLEEKKRAGEKSAEGYQKRTEDYSYETL-TPEARHKHLKAFKVFIDP 114 Query: 114 K 114 K Sbjct: 115 K 115 >gi|300917853|ref|ZP_07134492.1| helix-turn-helix protein [Escherichia coli MS 115-1] gi|300414950|gb|EFJ98260.1| helix-turn-helix protein [Escherichia coli MS 115-1] Length = 185 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ G+SQE + G + + E+G + ++ ++ L Sbjct: 32 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 91 Query: 67 ESPISFFFDVSPTVCSD 83 P+ +D Sbjct: 92 SVEPWQLLAPGPSEDND 108 >gi|295700360|ref|YP_003608253.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439573|gb|ADG18742.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 195 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 36/88 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R++ R S + L E ++ + E+G + A+ L ++ L P Sbjct: 2 DINALIARRVKALRDAQNWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFIST 97 ++ F+ T ++ S + T Sbjct: 62 LASLFEREGTPAAEPSPVSRAAEQPVWT 89 >gi|227500542|ref|ZP_03930593.1| DNA-binding protein [Anaerococcus tetradius ATCC 35098] gi|227217354|gb|EEI82684.1| DNA-binding protein [Anaerococcus tetradius ATCC 35098] Length = 367 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R G++QE+L E + +T V K+E G + L ++ + Sbjct: 4 IGEIILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63 Query: 75 DVSPTVCS 82 P + S Sbjct: 64 GYDPDLSS 71 >gi|49479791|ref|YP_035494.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331347|gb|AAT61993.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 80 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I F Sbjct: 18 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 71 >gi|49081740|gb|AAT50270.1| PA5301 [synthetic construct] Length = 183 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG R+R R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGARLRTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLK---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF D+ + + + + ++D S ++L Sbjct: 58 LVEFFSLDLEQDSHTQVVYKADELIDISSGAVSMRLV 94 >gi|75759042|ref|ZP_00739149.1| Transcriptional activator plcR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900476|ref|YP_002448887.1| putative transcriptional regulator PlcR [Bacillus cereus G9842] gi|228903829|ref|ZP_04067944.1| hypothetical protein bthur0014_49830 [Bacillus thuringiensis IBL 4222] gi|228942497|ref|ZP_04105033.1| hypothetical protein bthur0008_51270 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228968481|ref|ZP_04129469.1| hypothetical protein bthur0004_52560 [Bacillus thuringiensis serovar sotto str. T04001] gi|228975431|ref|ZP_04135986.1| hypothetical protein bthur0003_51760 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982064|ref|ZP_04142356.1| hypothetical protein bthur0002_52210 [Bacillus thuringiensis Bt407] gi|1212805|emb|CAA63744.1| PlcR protein [Bacillus thuringiensis] gi|37650598|emb|CAE46796.1| PlcR protein [Bacillus thuringiensis] gi|37650604|emb|CAE46799.1| PlcR protein [Bacillus thuringiensis] gi|37650612|emb|CAE46897.1| transcriptional regulator [Bacillus thuringiensis] gi|37650616|emb|CAE46899.1| transcriptional regulator [Bacillus thuringiensis] gi|37650624|emb|CAE46903.1| transcriptional regulator [Bacillus thuringiensis] gi|74493441|gb|EAO56550.1| Transcriptional activator plcR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218545337|gb|ACK97731.1| putative transcriptional regulator PlcR [Bacillus cereus G9842] gi|228777602|gb|EEM25877.1| hypothetical protein bthur0002_52210 [Bacillus thuringiensis Bt407] gi|228784225|gb|EEM32249.1| hypothetical protein bthur0003_51760 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791187|gb|EEM38801.1| hypothetical protein bthur0004_52560 [Bacillus thuringiensis serovar sotto str. T04001] gi|228817180|gb|EEM63269.1| hypothetical protein bthur0008_51270 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228855738|gb|EEN00283.1| hypothetical protein bthur0014_49830 [Bacillus thuringiensis IBL 4222] gi|326943148|gb|AEA19044.1| transcriptional activator plcR [Bacillus thuringiensis serovar chinensis CT-43] Length = 285 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|326623794|gb|EGE30139.1| regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 231 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M +L E +G+ + + E G + L +++ L I+ Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIA 60 Query: 72 FFFDVSPTVC-----SDISSEENNVMDFIS 96 F SD+ + +NV D Sbjct: 61 ELFTSDSKGNTVCKHSDMRKDSDNVKDLFR 90 >gi|319783030|ref|YP_004142506.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168918|gb|ADV12456.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 187 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ ++G LG + V + E+G++ L+ +E+ PIS FF Sbjct: 13 IRALRKARGLTLAEIGLKLGRSVGWVSQVERGLSTPSLGDLRAFAELFGVPISLFFSHDV 72 Query: 79 TVCSD 83 V S+ Sbjct: 73 PVESE 77 >gi|256790076|ref|ZP_05528507.1| transcriptional regulator [Streptomyces lividans TK24] Length = 197 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 7 DLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTT 66 Query: 70 ISFFFDVSPT 79 + + + Sbjct: 67 LDQLVETADE 76 >gi|256848878|ref|ZP_05554312.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256714417|gb|EEU29404.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 68 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ GMSQ L + LG T V +E G + +Q I++ F Sbjct: 4 KLKILRVEKGMSQSDLAQALGTTQVTVSAWETGRSTPRPPMMQKIADYFGVSKDDIF 60 >gi|229100015|ref|ZP_04230935.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] gi|228683443|gb|EEL37401.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] Length = 66 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G +QE+L + +G++ Q + EK I+ E PI+ FD Sbjct: 4 NRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANEFEKPITDVFDY 63 Query: 77 SPT 79 Sbjct: 64 QEE 66 >gi|260587659|ref|ZP_05853572.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] gi|260541924|gb|EEX22493.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] Length = 205 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 ++ RM G +Q++L + G++ + +Q YE K +N+ A L +S++L I Sbjct: 144 NLKRIRMTYGFTQKELADNSGVSLRSIQMYEQRHKNINKASAETLYRLSKILGCTIEDLM 203 Query: 75 D 75 + Sbjct: 204 E 204 >gi|255092294|ref|ZP_05321772.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255100378|ref|ZP_05329355.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|255306320|ref|ZP_05350491.1| putative phage repressor [Clostridium difficile ATCC 43255] gi|255649811|ref|ZP_05396713.1| putative phage repressor [Clostridium difficile QCD-37x79] Length = 118 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFF 73 KR+R R G++Q +LGE +G++ + + YE NR + +++V + + Sbjct: 4 KRLRELRKEFGLTQRELGEKVGVSQRVLGYYET-ENRFPDEHILNKLADVFNVSVDYL 60 >gi|170722460|ref|YP_001750148.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760463|gb|ACA73779.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 114 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P ++G+++ R ++Q K+GE L I+ + V + E+G + S+L ++++ Sbjct: 4 KEPSPH--HIGRQLAAYRRACRLTQAKVGEYLKISGEAVSRLERGEVELSVSKLLKLADL 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 P D + +++ + D Sbjct: 62 YGCPADELLLAISPRPQDQGQQITSIIKELGEAD 95 >gi|167756260|ref|ZP_02428387.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402] gi|167703668|gb|EDS18247.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402] Length = 71 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R L M+Q+ L + +G++ Q + EKG I +VL + F Sbjct: 6 RIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDELF 62 >gi|163745005|ref|ZP_02152365.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanibulbus indolifex HEL-45] gi|161381823|gb|EDQ06232.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanibulbus indolifex HEL-45] Length = 196 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R +R L ++ ++LGE G++ + + E+G+ L I+ L+ + FF Sbjct: 1 MRKQRHRLSLTLQQLGEASGVSVGYLSQVERGLATPSLGTLSQIAVALQVEVGFFIHTPK 60 Query: 79 TVCSDISSEENNVMDFISTP 98 T S ++E + Sbjct: 61 TQDSLTRADERQRFAVSGSS 80 >gi|116331586|ref|YP_801304.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125275|gb|ABJ76546.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 204 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V + ++L R G S +KL G++ + + E+G + S L I+ L P S Sbjct: 24 VKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSELL 83 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + EN + F S+ Sbjct: 84 KEKGAEGVIVMKAENTKVLFSSSK 107 >gi|50085608|ref|YP_047118.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49531584|emb|CAG69296.1| putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 198 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K ++ +G +I+ R G+ ++ + GI+ + K E L Sbjct: 1 MRQTKNSVKLEQYIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSR 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + +VL P+S F S + + DG+++ R Sbjct: 61 LCDVLGIPMSTLFSQYDQQESHAM--------LVKSGDGMEVVR 96 >gi|300172999|ref|YP_003772165.1| Transcriptional activator [Leuconostoc gasicomitatum LMG 18811] gi|299887378|emb|CBL91346.1| Transcriptional activator [Leuconostoc gasicomitatum LMG 18811] Length = 275 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ RR I +SQ +LG +G + V + E G + I + L+ + +F Sbjct: 10 IKERRKIKNISQSELGRIIG-SQAMVSRIENGQILPNLQTIHLICKTLDLTVEEYFYTYY 68 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +D++ N++ + + D L + + I + Sbjct: 69 KIGTDMTDFRNDLDEKYMSTDTTALEQQYSDIKATNM 105 >gi|227537772|ref|ZP_03967821.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300772451|ref|ZP_07082321.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227242386|gb|EEI92401.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300760754|gb|EFK57580.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 138 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G +I R ++G++Q+ L E +G+T Q V K E+ N V RL+ ++ L + Sbjct: 15 HMGIKIGSARRLVGITQKDLAERMGVTKQAVSKLEQTEN-VDDERLEKVAIALGVSV 70 >gi|182683999|ref|YP_001835746.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|182629333|gb|ACB90281.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] Length = 177 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 21 IGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 75 >gi|169334539|ref|ZP_02861732.1| hypothetical protein ANASTE_00942 [Anaerofustis stercorihominis DSM 17244] gi|169259256|gb|EDS73222.1| hypothetical protein ANASTE_00942 [Anaerofustis stercorihominis DSM 17244] Length = 104 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D +GKR++ R G++QEKL E + ++ + E G + + +I+ VL Sbjct: 3 IDYRKLGKRLKEERKKQGVTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNIANVLNVS 62 >gi|169342567|ref|ZP_02863620.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] gi|169299339|gb|EDS81406.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] Length = 112 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 2/97 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R L +SQ+ G L ++ + E+G + + I + S+ + Sbjct: 3 NRLKELRKTLNLSQKDFGAKLKLSPDMISLLERGKRKFTERVISDICREFDVNRSWLENG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + DI +E + + + D ++ R ++Q+DDV Sbjct: 63 EGDMFIDILAEIDEFNN--ADKDVQEMVRLYMQLDDV 97 >gi|153938184|ref|YP_001392454.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934080|gb|ABS39578.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320440|gb|ADG00818.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 93 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ R ++QE+LG+ L ++ Q V YE V + L +S++ + + Sbjct: 3 GDRLKELREEKELTQEELGKLLSVSRQTVSGYEAEVIEPNINNLVRLSDIFNVSLDYL 60 >gi|149189972|ref|ZP_01868250.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1] gi|148836138|gb|EDL53097.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1] Length = 155 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R+ G SQE+L E G++ + +Q+ E+G + G L+ ++ V E+ I+ Sbjct: 3 IRKLRLQRGWSQEQLAELSGLSIRTIQRIERG-QKPGLESLKSLAAVFETTITELQQEPK 61 Query: 79 -TVCSDISSEENNVMDFIST 97 T +I+ EE NV+D + + Sbjct: 62 MTSKVEITQEEQNVIDQVRS 81 >gi|91787958|ref|YP_548910.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91697183|gb|ABE44012.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 207 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R+R R +S + L G++ + E+G + A L+ ++ L P++ F Sbjct: 20 IAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPTAVLLEKLATGLNVPLASLF 79 Query: 75 DVSPTVCSDIS 85 + ++ Sbjct: 80 EAPQPTKDPVA 90 >gi|49081770|gb|AAT50285.1| PA0535 [synthetic construct] Length = 185 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++ + L + + + V + E+G++R L IS+VL P ++FF Sbjct: 15 VRELRKRKGITLQALADGIRRSVGLVSQVERGLSRPAVDDLVAISQVLGVPATYFF 70 >gi|23006264|ref|ZP_00048663.1| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase [Magnetospirillum magnetotacticum MS-1] Length = 216 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 27/57 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG IR R G++Q +L E LG + V + E+G + L I L+S I Sbjct: 11 QVGALIRGARQNRGLTQTQLAERLGTSQSAVHRIEQGSQNLSLEMLNRIGLALDSEI 67 >gi|317501285|ref|ZP_07959488.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|316897249|gb|EFV19317.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] Length = 209 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLKGETDEYETDITDKKE 85 >gi|312134839|ref|YP_004002177.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774890|gb|ADQ04377.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 84 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FFFDV 76 R++ R + + Q+++ E L I+ Q+ +YE G ++ I+++L + F+D Sbjct: 2 RLKEIRKMKNLKQKEVAEKLQISPQRYCQYENGKRKIPIDIAIKIAQILNMSMDEIFYDK 61 Query: 77 S 77 S Sbjct: 62 S 62 >gi|302669238|ref|YP_003832388.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396902|gb|ADL35806.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 359 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ R +Q++L LGIT Q V ++E + I+ I Sbjct: 3 IMLGDKIKELRKRDRRTQDELATALGITNQAVSRWEANKAYPDMEMIPAIANYFHVSIDE 62 Query: 73 FFDVSPTVCSDIS 85 F + S +S Sbjct: 63 LFGYNNDRESTLS 75 >gi|300691862|ref|YP_003752857.1| hypothetical protein RPSI07_2218 [Ralstonia solanacearum PSI07] gi|299078922|emb|CBM10198.1| conserved protein of unknown function [Ralstonia solanacearum PSI07] Length = 182 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G + E L E G+T + K E+G++ + ++ L P F Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF-GE 62 Query: 78 PTVCSDIS 85 P S I+ Sbjct: 63 PAAASAIT 70 >gi|295090423|emb|CBK76530.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 171 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 33/55 (60%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE+L L + Q V K+EKG++ ++ L +++ L++ +S Sbjct: 4 ENIKNLRKAKGLSQEELSVKLNVVRQTVSKWEKGLSVPDSNMLISLADELDTSVS 58 >gi|293568751|ref|ZP_06680065.1| putative transcriptional regulator [Enterococcus faecium E1071] gi|291588468|gb|EFF20302.1| putative transcriptional regulator [Enterococcus faecium E1071] Length = 410 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 9 NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N V+ + +G+ IR+ R G +Q L E +GI+ + K EKG ++ +L I + L+ Sbjct: 2 NQVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRQLSEEKLNLILDSLQ 61 Query: 68 ---SPIS 71 P++ Sbjct: 62 EELVPVN 68 >gi|269967853|ref|ZP_06181897.1| hypothetical protein VMC_33270 [Vibrio alginolyticus 40B] gi|269827558|gb|EEZ81848.1| hypothetical protein VMC_33270 [Vibrio alginolyticus 40B] Length = 112 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R +SQ+ LG +G+ ++ +YE+ + L+ I++ L P+++ Sbjct: 9 ARLKHARKQANLSQKALGIRIGMDDSSASARMNQYERERHTPDVKTLKLIADELNVPLNY 68 Query: 73 FF 74 FF Sbjct: 69 FF 70 >gi|225378528|ref|ZP_03755749.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM 16841] gi|225209631|gb|EEG91985.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM 16841] Length = 131 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+ R G++QE+L LG+ + Q V + E G L +S +L Sbjct: 41 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTD 100 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + S + ++ +++ +ST Sbjct: 101 YLLMGSEPSKEKVKNDLLSIISELST 126 >gi|126741323|ref|ZP_01757000.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126717579|gb|EBA14304.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 189 Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++ + L + + + E+ ++ S L+ IS L P+S F Sbjct: 11 LGADIRALRKARGLTLTDIAGMLDRSVGWLSQVERDLSEPSISDLRQISNCLGVPMSMLF 70 Query: 75 DVSPTVCSD 83 S + Sbjct: 71 AHSGAPAEE 79 >gi|325688546|gb|EGD30563.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK72] Length = 170 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFIS 96 F S + + S E N D +S Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS 90 >gi|297171001|gb|ADI22016.1| predicted transcriptional regulators [uncultured myxobacterium HF0200_01L06] Length = 265 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI---S 71 +G+ +R R G++Q L + GI+ + + E G + ++ VLE P S Sbjct: 5 IGELLRYWRDKRGLTQFDLADRSGISCRHLSFVETGRAGPSRQTILTLARVLEIPSIERS 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDG-LQLNRYFIQ-IDDVK 114 ++ + EE V ++++ +G L N F I D Sbjct: 65 RILILAGYAVDWLGPEEEAVEWWLTSLEGALAANEPFPAWITDPN 109 >gi|317508458|ref|ZP_07966127.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] gi|316253236|gb|EFV12637.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] Length = 486 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 12/95 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R+ G+SQ L L I+ + + E V + L +SE L FF Sbjct: 20 YVGPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPITMPLLLRLSEKLGVDTEFF 79 Query: 74 F------------DVSPTVCSDISSEENNVMDFIS 96 +V+ DI + +V + +S Sbjct: 80 TAQEEARLVAEIREVAMDTGVDIDTSPESVAEVVS 114 >gi|307292240|ref|ZP_07572104.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496746|gb|EFM66299.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 270 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 +D VG RIR R L +S EK G+ +G + V +E+G+N L I+E+ Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEI 59 >gi|291563698|emb|CBL42514.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 189 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF- 74 R+ RR LG++ E +G+ +G+T V+K+E G + + ++ +++ L + Sbjct: 3 NRLYERRKELGLTLEDVGKIVGVTKSTVKKWESGYIENMRRDKIALLAKALNVSPLYIMG 62 Query: 75 -DVSPTVCSD 83 D P +D Sbjct: 63 IDAGPDQVND 72 >gi|258515442|ref|YP_003191664.1| hypothetical protein Dtox_2224 [Desulfotomaculum acetoxidans DSM 771] gi|257779147|gb|ACV63041.1| protein of unknown function DUF955 [Desulfotomaculum acetoxidans DSM 771] Length = 399 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ RM G + +L + I+ Q + YE G N+ + IS L P FF Sbjct: 9 GERLKSARMYNGYTLTELSKITNISKQSLSLYENGNNKPEWDNISKISVALGFPRDFFLQ 68 Query: 76 VSP 78 S Sbjct: 69 ESD 71 >gi|296138750|ref|YP_003645993.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026884|gb|ADG77654.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 191 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 8/116 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + +PV VG R+R R ++ + E GI+ + + E G + L ++ Sbjct: 2 TETTDPVLAQVGPRLRAIRQERDITLTAVAEATGISVSTLSRLEGGTRKPTLELLLPLAR 61 Query: 65 VLESPISFFFDVSPTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P+ D T + + ++ GL R F ++ + Sbjct: 62 TYGLPLDELVDAPETGDPRVRLKPVRHGDRTIVPLTRRAGGL---RTFKEVIRPRP 114 >gi|237731126|ref|ZP_04561607.1| P22 repressor protein c2 [Citrobacter sp. 30_2] gi|226906665|gb|EEH92583.1| P22 repressor protein c2 [Citrobacter sp. 30_2] Length = 208 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R + SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTKTSQKELGKFCGVSDVAVGYWEKDINVPGGESLSKLAKYFNTSIDY 61 >gi|226322393|ref|ZP_03797911.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] gi|225209193|gb|EEG91547.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] Length = 109 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 + RM +Q ++ + LGI+ V YE G L+ I++ +++ S T Sbjct: 9 KNLRMQNHYTQGQMADLLGISRSAVSMYETGNREPDLETLEKIAKFFNVDMNYLLGSSVT 68 Query: 80 VCSDISSEENNVMD 93 V SD ++ Sbjct: 69 VTSDNPEPSYEDIE 82 >gi|225018551|ref|ZP_03707743.1| hypothetical protein CLOSTMETH_02500 [Clostridium methylpentosum DSM 5476] gi|224948683|gb|EEG29892.1| hypothetical protein CLOSTMETH_02500 [Clostridium methylpentosum DSM 5476] Length = 118 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 3/109 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R L ++Q GE LG++ V E G ++ I + + Sbjct: 6 NIKQLRKQLELTQTAFGERLGVSRNVVNNLELGRVDPSDLVIKSICREFNVNSLWLLEGK 65 Query: 78 PTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + S + + ++ ++ + L R ++ + D R+ I++ ++ Sbjct: 66 GEMFSGYADDLIQSVAEEYNLNNFDVDLIRAYLDL-DKDSRRVIMDFIK 113 >gi|153811705|ref|ZP_01964373.1| hypothetical protein RUMOBE_02098 [Ruminococcus obeum ATCC 29174] gi|149832108|gb|EDM87193.1| hypothetical protein RUMOBE_02098 [Ruminococcus obeum ATCC 29174] gi|291540232|emb|CBL13343.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 152 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 + G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S Sbjct: 14 MTFGEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVS 73 Query: 72 FFFDVSPTVCSDISSE 87 + + ++ S + Sbjct: 74 YLMSENEAFITEASEQ 89 >gi|153815957|ref|ZP_01968625.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC 27756] gi|317500717|ref|ZP_07958935.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089807|ref|ZP_08338700.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846776|gb|EDK23694.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC 27756] gi|316897911|gb|EFV19964.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403504|gb|EGG83062.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium 3_1_46FAA] Length = 106 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 29/75 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++++ R+ ++QE + + + E +V S L I L++ + + Sbjct: 8 QIGEKLKKIRLSKNLTQEYIANAADVNTSHISNIENNRVKVSLSVLVQICNALDTTVDYI 67 Query: 74 FDVSPTVCSDISSEE 88 S +E Sbjct: 68 LSDEYNDSSSAIEQE 82 >gi|291543305|emb|CBL16414.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 215 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG---ASRLQHISEVLESPISFF 73 ++ R G+SQ +L E GI + +Q YE+ VN + A L +S VL I Sbjct: 150 SNLKRIRESRGLSQSELAEQSGIKVRNIQMYEQRVNNIDKAQAQTLYKLSRVLGCDIEDL 209 Query: 74 FD 75 + Sbjct: 210 LE 211 >gi|281491219|ref|YP_003353199.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374960|gb|ADA64478.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 104 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 33/82 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +++ R ++Q++L + + + + V YE+G L I + L + Sbjct: 5 YLGDKLKASRKSKNLTQKELADKINVKTRTVASYEQGSAYPSIEVLGKICDTLGISSDYL 64 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 +S ++ ++ M Sbjct: 65 LGISDKTPLEMGGLTDDQMQLF 86 >gi|260161768|emb|CAZ39312.1| hypothetical protein [Streptococcus suis] gi|313575350|emb|CBR26879.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 80 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R RR +S ++ L I +E G + L ++ +L+ P+++F Sbjct: 4 GLRLRERREKQNLSHVEIANILEINRSSYNSWESGRAKPNQKNLTALAAILDVPVTYF 61 >gi|239942469|ref|ZP_04694406.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239988933|ref|ZP_04709597.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291445925|ref|ZP_06585315.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291348872|gb|EFE75776.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 486 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R GM+Q + LGI+ + E G + AS L I++V FF + Sbjct: 14 SKLRRLRRERGMNQVDMARALGISASYANQIELGQRPLTASVLLQIAKVFGVDAEFFSEA 73 Query: 77 S 77 + Sbjct: 74 A 74 >gi|238921821|ref|YP_002935335.1| hypothetical protein EUBELI_20054 [Eubacterium eligens ATCC 27750] gi|238873493|gb|ACR73201.1| Hypothetical protein EUBELI_20054 [Eubacterium eligens ATCC 27750] Length = 154 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R M+ ++L GI ++KYE +L+ I+ L+ + F D+ Sbjct: 18 IRKYREARKMTMKQLSIKSGIKLSTIKKYETDNRNPKLEQLEKIAAALDVSVFEFLDIEV 77 Query: 79 TVCSDISS 86 SDI S Sbjct: 78 KSISDIIS 85 >gi|169350485|ref|ZP_02867423.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM 1552] gi|169292805|gb|EDS74938.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM 1552] Length = 117 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R G+SQE+LG + +T Q + +E +L+ +S+V + + Sbjct: 1 MTLGENILKLRKKQGLSQEQLGYQIDVTRQTISNWESEDTAPNPEQLKRLSKVFDISVDE 60 Query: 73 FFD 75 D Sbjct: 61 LLD 63 >gi|167840953|ref|ZP_02467637.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia thailandensis MSMB43] Length = 191 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 6/98 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R LG++ ++ G++ + + E+G + L I+ L + +F Sbjct: 15 IGNKMRALRQRLGLTLDEAAAAAGLSKPFLSQVERGRATPSITSLVGIARALGVTMQYFV 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 D S +E ++ F ++ + Sbjct: 75 DAPTEARSVCRNEALRYFSLANS------TNAFARLTN 106 >gi|160285873|pdb|2QFC|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed With Papr gi|160285874|pdb|2QFC|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed With Papr Length = 293 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFY 64 Query: 75 DV 76 +V Sbjct: 65 EV 66 >gi|159036440|ref|YP_001535693.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157915275|gb|ABV96702.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 394 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 10 PVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLE 67 P D VG RIR R+ G MSQ L G++ + + E G + S L I+ L+ Sbjct: 2 PTDT-VGSRIRYWRIRRGGMSQTVLAGLAGLSQPYISQVESGHRSIDRRSTLIAIAAALQ 60 Query: 68 SPISFFFD--VSPTVCSDISSEENNVM 92 ++ D PT + + + + Sbjct: 61 VTVADLLDQPGDPTDPALLGAADAVPA 87 >gi|254250154|ref|ZP_04943474.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184] gi|124876655|gb|EAY66645.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184] Length = 242 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 14/108 (12%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 71 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 130 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD----VKVRQKIIEL 122 + +++ PD + Y I D +R + L Sbjct: 131 PRS----------VPWVTRPDERRTVYYAAGITDILVSPNMRSRFSIL 168 >gi|121609979|ref|YP_997786.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554619|gb|ABM58768.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 208 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ G++ ++ E GI+ + K E G G L I+ L +S F Sbjct: 24 VGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMAGLDTLARIARTLGVAMSALF 83 >gi|313114704|ref|ZP_07800206.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622929|gb|EFQ06382.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 231 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+L R G++Q++ E LG++ + YEKG+ G + +++ + S Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLLGRSA 66 Query: 79 TVCSDISSEEN 89 + S E+ Sbjct: 67 ERNGMMLSAED 77 >gi|304397398|ref|ZP_07379276.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304355016|gb|EFM19385.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 185 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLAQIRQTLGLSQRRVAEQAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + P + ++++ S L+L ID+ ++ + L+ + Sbjct: 69 EPKPDAEPKVIVRPGDLVEIGSQGVSLKL------IDNGGAQRSLGMLLET 113 >gi|260426928|ref|ZP_05780907.1| transcriptional regulator, XRE family with cupin sensor [Citreicella sp. SE45] gi|260421420|gb|EEX14671.1| transcriptional regulator, XRE family with cupin sensor [Citreicella sp. SE45] Length = 189 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Query: 9 NPVDINVGK---RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + D +G+ R++ R G+S + + + G++ V + E+G + + L +++ Sbjct: 4 HDADAVLGRIPGRLKDARQAKGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRA 63 Query: 66 LESPISFFFDVSPTV 80 L+ + D+ Sbjct: 64 LQVDFAGLLDLGAPA 78 >gi|238754555|ref|ZP_04615909.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] gi|238707186|gb|EEP99549.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] Length = 166 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 13 MKKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 72 Query: 67 ES 68 Sbjct: 73 SV 74 >gi|227508341|ref|ZP_03938390.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192159|gb|EEI72226.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 237 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K+I+ R ++Q++L E + ++ + + +E G N + +SE+ E I Sbjct: 26 LSKKIKQYRKEKNLTQKQLAEKMFVSRKLISNWENGRNFPDFRAMIRLSEIFEIKIDDLL 85 Query: 75 DVSPTVCSDISSE 87 V + Sbjct: 86 KNDNKVIEHFDDQ 98 >gi|255280273|ref|ZP_05344828.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255269364|gb|EET62569.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 421 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 15/106 (14%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NKK G + RR LGM+Q++ L +T V K+E+G++ + ++ Sbjct: 8 MENKKT-------FGAFVLRRRKELGMTQKEFAARLYVTESAVSKWERGMSYPDITLIRS 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 I VLE S S + L+L R + Sbjct: 61 ICSVLEVSEHELLTGSEDTEKRTSEKLAEKY--------LRLTRNY 98 >gi|219855742|ref|YP_002472864.1| hypothetical protein CKR_2399 [Clostridium kluyveri NBRC 12016] gi|219569466|dbj|BAH07450.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 448 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G +K + +++G++I+ RR L M+ + L IT Q+ E G + L+++ Sbjct: 8 GQRKREHMEILSLGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYL 66 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + L++ I + + T I + N+ + Sbjct: 67 AFELKTSIEYLMESEETQAEKICTYFENIAE 97 >gi|160945036|ref|ZP_02092262.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium prausnitzii M21/2] gi|158442767|gb|EDP19772.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium prausnitzii M21/2] gi|295104555|emb|CBL02099.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 231 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+L R G++Q++ E LG++ + YEKG+ G + +++ + S Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLLGRSA 66 Query: 79 TVCSDISSEEN 89 + S E+ Sbjct: 67 ERNGMMLSAED 77 >gi|157149688|ref|YP_001449888.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157074482|gb|ABV09165.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 71 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E ++++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALFWD 61 Query: 77 SPTVCSD 83 D Sbjct: 62 PQLTDED 68 >gi|160884331|ref|ZP_02065334.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|255691648|ref|ZP_05415323.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] gi|156110070|gb|EDO11815.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|260622719|gb|EEX45590.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] Length = 94 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+L R +SQ++L GI+ + E G S + I L+ P S+ Sbjct: 1 MDIGNAIKLLRKRKDISQKELSNLCGISANALCSIESGGTFPSKSTIAKICNALKIPESY 60 Query: 73 --FFDVSPTVCSD 83 F +S + Sbjct: 61 LLLFSISEEDIPE 73 >gi|149277999|ref|ZP_01884138.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] gi|149231197|gb|EDM36577.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] Length = 108 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK IR R G SQ ++ + L I+ K E G+ + SRL+ I+ + + Sbjct: 4 IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLEQIAHLFQVS 58 >gi|42518979|ref|NP_964909.1| hypothetical protein LJ1054 [Lactobacillus johnsonii NCC 533] gi|41583266|gb|AAS08875.1| hypothetical protein LJ_1054 [Lactobacillus johnsonii NCC 533] Length = 392 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 17/104 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R + G S+ L + L +T Q + +YE ++ + ++ +S FF+ Sbjct: 4 GEKLKQLRELQGFSRNDLAKKLSLTEQTIGQYENNQITPRLDIMEKLLQIFHVDLS-FFN 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 V ++ SEE+ + D R+KI Sbjct: 63 TPSFVEKNVISEESIA----------------YRTKDRNSRKKI 90 >gi|15902995|ref|NP_358545.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|15458561|gb|AAK99755.1| Hypothetical protein spr0951 [Streptococcus pneumoniae R6] Length = 177 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 21 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 75 >gi|89074743|ref|ZP_01161201.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89049507|gb|EAR55068.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 130 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ ++IR R G++Q + + LG+ Q E G L +I+++ + + Sbjct: 21 AHIAQKIREAREWKGITQVSMAKQLGVARQTYLDLESGKTEPRVLMLMNIAKITGRSLHW 80 Query: 73 FFDVSPTVC 81 F T Sbjct: 81 FISDDNTPE 89 >gi|300172401|ref|YP_003771566.1| ABC transporter ATP-binding protein [Leuconostoc gasicomitatum LMG 18811] gi|299886779|emb|CBL90747.1| ABC transporter, ATP-binding protein [Leuconostoc gasicomitatum LMG 18811] Length = 296 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ L R + +SQ+ L + L ++ Q V K+E G +L ++E+L ++F Sbjct: 7 SQLCLLRQKMSLSQDALAQKLYVSRQSVSKWEHGDAEPDIDKLISLAEILAVDLNFLLSG 66 Query: 77 SPTVCS 82 + Sbjct: 67 QQSNEE 72 >gi|288935233|ref|YP_003439292.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|288889942|gb|ADC58260.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 189 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S +L E G++ + + E+ + + L I+ L P Sbjct: 3 IAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 S F + P + S+ + + TP Sbjct: 63 SAF--IVPDASAAPSAFDPQQQAMVVTP 88 >gi|257879451|ref|ZP_05659104.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|323142576|ref|ZP_08077392.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|332655057|ref|ZP_08420798.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|257813679|gb|EEV42437.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|322413009|gb|EFY03912.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|332515917|gb|EGJ45526.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 149 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 41/81 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++I+ R+ + +SQ +L + GI+ + + YE+ S ++ ++E L +S+ Sbjct: 1 MTFGEKIKEARLAMNLSQTELAQMTGISERSLYTYEQLGTLPRKSNIRKLAEALHISVSY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 D S T ++ +++ Sbjct: 61 LLDESETDSQSHIDQDMFILE 81 >gi|256854918|ref|ZP_05560282.1| predicted protein [Enterococcus faecalis T8] gi|307290768|ref|ZP_07570666.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|256710478|gb|EEU25522.1| predicted protein [Enterococcus faecalis T8] gi|306498188|gb|EFM67707.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|315028649|gb|EFT40581.1| helix-turn-helix protein [Enterococcus faecalis TX4000] Length = 257 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q V K+E G + L +S++ I SP Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|256617991|ref|ZP_05474837.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257091482|ref|ZP_05585843.1| predicted protein [Enterococcus faecalis CH188] gi|312905563|ref|ZP_07764677.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|256597518|gb|EEU16694.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257000294|gb|EEU86814.1| predicted protein [Enterococcus faecalis CH188] gi|310631292|gb|EFQ14575.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315576531|gb|EFU88722.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 257 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q V K+E G + L +S++ I SP Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|237734898|ref|ZP_04565379.1| transcriptional regulator [Mollicutes bacterium D7] gi|229382226|gb|EEO32317.1| transcriptional regulator [Coprobacillus sp. D7] Length = 71 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R L M+Q+ L + +G++ Q + EKG I +VL + F Sbjct: 6 RIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDELF 62 >gi|227111558|ref|ZP_03825214.1| regulator of pectin lyase production [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G+SQ+ LG+ +G++ +QK E G +++ +S L + + Sbjct: 7 ERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS-QTTKIVELSNSLHVRPEWLANG 65 Query: 77 SPTVCS 82 + S Sbjct: 66 EGPMRS 71 >gi|206580811|ref|YP_002238246.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|290509290|ref|ZP_06548661.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55] gi|206569869|gb|ACI11645.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|289778684|gb|EFD86681.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55] Length = 189 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S +L E G++ + + E+ + + L I+ L P Sbjct: 3 IAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 S F + P + S+ + + TP Sbjct: 63 SAF--IVPDASAAPSAFDPQQQAMVVTP 88 >gi|169350968|ref|ZP_02867906.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM 1552] gi|169292030|gb|EDS74163.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM 1552] Length = 335 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + +I R G SQE+L + L +T Q + K+E + ++ +SE+ Sbjct: 13 MNVILADKIIELRKKNGWSQEQLAQKLNVTRQSISKWEGEQSVPDLQKIILLSEIFGVTT 72 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + N +D L + F+ I Sbjct: 73 DYLIKDEIEEEEFL----NEDVDLKVRKVTLTEAKEFLNIK 109 >gi|164687400|ref|ZP_02211428.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] gi|164603174|gb|EDQ96639.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] Length = 179 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ RM ++QE+L ++ + + E + + L I E+L + + Sbjct: 1 MDIGSKIKSMRMEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLRE 60 Query: 73 FF-DVSPTVCS 82 FF ++ P + Sbjct: 61 FFNEIDPERIT 71 >gi|152970487|ref|YP_001335596.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894976|ref|YP_002919710.1| putative regulator [Klebsiella pneumoniae NTUH-K2044] gi|262044571|ref|ZP_06017627.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330003723|ref|ZP_08304741.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|150955336|gb|ABR77366.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547292|dbj|BAH63643.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038115|gb|EEW39330.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536860|gb|EGF63164.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 189 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S +L E G++ + + E+ + + L I+ L P Sbjct: 3 IAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 S F + P + S+ + + TP Sbjct: 63 SAF--IVPDASAAPSAFDPQQQAMVVTP 88 >gi|153952986|ref|YP_001393751.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853643|ref|YP_002470765.1| hypothetical protein CKR_0300 [Clostridium kluyveri NBRC 12016] gi|146345867|gb|EDK32403.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567367|dbj|BAH05351.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 368 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R ++QE+LG+ +G++ V K+E G + + L ++ I Sbjct: 4 LQIGEVILKLRKKREITQEQLGKFIGVSTAAVSKWEVGNSYPDITLLPVLASFFNISI-- 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + I E VM+ + + Sbjct: 62 ----DELLNYKIELSEKEVMEIFRECEAM 86 >gi|104782559|ref|YP_609057.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95111546|emb|CAK16266.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 177 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +V + +R R G+SQ L E G++ + + E G V + L I+E L Sbjct: 4 HVSQNVRRLRSDAGLSQAALSERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGV 58 >gi|330836178|ref|YP_004410819.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748081|gb|AEC01437.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374] Length = 99 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE--VLESPISF 72 + R ++Q +L E +G++ + K EKG R+ SRLQ ++ ++ I+F Sbjct: 41 LSEIRKAQNLTQAELAEKVGLSQTDISKIEKGKKRITISRLQELANGMGMDVHITF 96 >gi|322378166|ref|ZP_08052651.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280896|gb|EFX57911.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 110 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 33/77 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q+ + L I+ Q++E G ++ ++ +++ + Sbjct: 4 ERLKKLRKEGKLTQKDIAAFLNISQPAYQQFESGKKKMNLETMKKLADFFNVSTDYLLGK 63 Query: 77 SPTVCSDISSEENNVMD 93 + D+ + + +D Sbjct: 64 TDFPDLDLEVDIDTAID 80 >gi|318061096|ref|ZP_07979817.1| putative transcriptional regulator [Streptomyces sp. SA3_actG] Length = 243 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D V KR+R R+ G S E+L ++ + + E G R+ L ++ L++ Sbjct: 6 DDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDT 65 Query: 69 PISFFFDVSPT 79 + + + Sbjct: 66 SLDQLVETASD 76 >gi|315222885|ref|ZP_07864765.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188024|gb|EFU21759.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 116 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIRL R+ GM+QE+L E + V K E V + L+ + + LE I F Sbjct: 15 YIGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEVDIETF 74 Query: 74 FDVS 77 FD++ Sbjct: 75 FDMA 78 >gi|312868567|ref|ZP_07728762.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095864|gb|EFQ54113.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 204 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ +R LG++Q + L +T Q + +E+G + S L +SEV + + Sbjct: 6 QIKQQRQQLGLTQADVASQLFVTRQTISNWEQGKSYPDLSMLVKLSEVYQVSLDSLLKGD 65 Query: 78 PTVCS 82 + + Sbjct: 66 AQLKN 70 >gi|308177557|ref|YP_003916963.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307745020|emb|CBT75992.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 191 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD + +RIR R LG S E L ++ + + E G R+ +L I++ L + + Sbjct: 7 VDQVIRQRIRNLRQNLGWSLESLASKASMSVSTLSRIETGSRRIALDQLIPIAKALNTSL 66 Query: 71 S 71 Sbjct: 67 D 67 >gi|297160623|gb|ADI10335.1| helix-turn-helix domain-containing protein [Streptomyces bingchenggensis BCW-1] Length = 80 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+ + R +S++ L E +G+ +Q + E+G I++ P+ Sbjct: 4 QVHNRLAMVRAERKVSRQSLAESVGVHYQTIGYIERGQYNPSLDLALKIAKFFGLPVEAL 63 Query: 74 FDVSP 78 F + P Sbjct: 64 FSLEP 68 >gi|251778373|ref|ZP_04821293.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082688|gb|EES48578.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 160 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 13/110 (11%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFDVS 77 IR RR L ++ E+LG+ +G+ V+K+E G+ + + + +++ L S Sbjct: 7 IRKRREELDLTYEQLGKIVGVGKSTVRKWETGIIGNLRSDSILALAKGLNLSPSTLMGW- 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVR 124 +EE N DF T + L ++ +++D + +++ EL Sbjct: 66 --------TEEENTYDFNLTKEETNLLEHYNKLNDLGKKEANKRVAELTE 107 >gi|229495100|ref|ZP_04388846.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229318031|gb|EEN83906.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 196 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVS 77 +R R G++ E L E G+T + K E+G++ + I+ VL++ + F D Sbjct: 5 LRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGISTPSIAVALKIARVLDADVGQLFSDSM 64 Query: 78 PTVCSDISSEENNVMD 93 I ++ V+D Sbjct: 65 EGNAMTIVRAKDRVID 80 >gi|291327181|ref|ZP_06127260.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311305|gb|EFE51758.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 118 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 32/51 (62%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R G+S +LG+ +G++ QQ+ +YE+ V+R+ L ++ L+ P+S F Sbjct: 40 RRNKGLSGSELGKKIGVSQQQISRYERNVSRLDFGSLIYLLHHLDMPLSDF 90 >gi|160879054|ref|YP_001558022.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427720|gb|ABX41283.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 179 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ ++QE+L + ++ + + E+ + + L I + L + + Sbjct: 1 MKIGAKIKELRVQKSLTQEELADRAELSKGFISQLERDITSPSIATLVDILQCLGTNLEA 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|24215594|ref|NP_713075.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657038|ref|YP_001124.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196747|gb|AAN50093.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45600275|gb|AAS69761.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 203 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 35/84 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V + ++L R G S +KL G++ + + E+G + S L I+ L P S Sbjct: 23 VKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSELL 82 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 T + EN + F S+ Sbjct: 83 KEKGTEGVIVMKAENTKVLFSSSK 106 >gi|330847157|gb|AEC46565.1| hypothetical transcriptional repressor [Xanthomonas alfalfae subsp. citrumelonis] Length = 116 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ++LG G + ++ +YE+G + + +++ L P +F Sbjct: 21 RRLKQARLHTGLSQKELGIRAGLDPHVASPRINQYERGKHEPKLETAERLAQALGIPAAF 80 Query: 73 FF 74 + Sbjct: 81 LY 82 >gi|320539287|ref|ZP_08038957.1| hypothetical protein SSYM_1010 [Serratia symbiotica str. Tucson] gi|320030679|gb|EFW12688.1| hypothetical protein SSYM_1010 [Serratia symbiotica str. Tucson] Length = 91 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G+SQE+LG GI ++ +YE+G++ ++ VL P +F Sbjct: 5 RLKAARLKAGLSQERLGILAGIDEATASARMNQYERGIHTPDFELASRLASVLHVPACYF 64 Query: 74 FDVSPTVCSDISSEENN 90 + V + I ++ Sbjct: 65 YAVEDDLAETILGYSDS 81 >gi|256849649|ref|ZP_05555081.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|256713765|gb|EEU28754.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] Length = 187 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 13/112 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R LG++Q+++ + IT K EKG NR+ L I + +S+ Sbjct: 1 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI---QIDDVKVRQKIIE 121 F D + + S +E N + LN F +I +++++I Sbjct: 61 FVDHY--LNDENSEKEVNYSEI--------LNIAFYEKDKIAAEEIKRQIFS 102 >gi|256827543|ref|YP_003151502.1| putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583686|gb|ACU94820.1| predicted transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 197 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS- 71 I + KR+ R G+SQE++ + ++ Q V K+E L ++ + + Sbjct: 3 IEIAKRLYEYRRAAGLSQEQVAAKIDVSRQAVSKWECAEASPDTDNLIALALLYGITVDE 62 Query: 72 -FFFDVSPTVCSDISSEENNV 91 F D + S+ V Sbjct: 63 LLFADPEKAIGEAPVSKAAGV 83 >gi|238060397|ref|ZP_04605106.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882208|gb|EEP71036.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 408 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 8/113 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFF 73 +G+R+ R +SQ+ + LG + V K E+GV R+ S L I+ +L+ + Sbjct: 6 IGRRVAYWRGRRKLSQQVFADRLGKSKSWVDKVERGVRRLDKFSVLYEIAYILQVDVQLL 65 Query: 74 FDVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P +D + ++ V + + + + +R+ + Sbjct: 66 LGKDPERRTDALNCIDQVEVQEIRAALERYDSMSAYFDAAPYPPPLADMRKAV 118 >gi|255101457|ref|ZP_05330434.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255307330|ref|ZP_05351501.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 66 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R + ++QE+L E +G+ + + + E G IS+++++PI F Sbjct: 7 NLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63 >gi|224823652|ref|ZP_03696761.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224604107|gb|EEG10281.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 132 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R G SQ L + GI+ V E+G + ++L I+ L+ ++ Sbjct: 22 LGTRIKAERERRGWSQAALAQRAGISQTTVADLERGTS-AATTKLIPIARALKVNPNWLE 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 + S + V TP+ L Sbjct: 81 TGQGPRDTIPSGDGRYVCA--DTPEELA 106 >gi|218281915|ref|ZP_03488247.1| hypothetical protein EUBIFOR_00815 [Eubacterium biforme DSM 3989] gi|218217058|gb|EEC90596.1| hypothetical protein EUBIFOR_00815 [Eubacterium biforme DSM 3989] Length = 152 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 + G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S Sbjct: 14 MTFGEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVS 73 Query: 72 FFFDVSPTVCSDISSEENN 90 + + ++ S + N Sbjct: 74 YLMSENEAFITEASEQFGN 92 >gi|157690974|ref|YP_001485436.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157679732|gb|ABV60876.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 71 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + RI++ R +Q+ L E LG+T Q V E G + I+ E + Sbjct: 1 MEIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYD 60 Query: 73 FF 74 F Sbjct: 61 VF 62 >gi|160884700|ref|ZP_02065703.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483] gi|237717098|ref|ZP_04547579.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237721923|ref|ZP_04552404.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262405867|ref|ZP_06082417.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647828|ref|ZP_06725380.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294806223|ref|ZP_06765070.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|156109735|gb|EDO11480.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483] gi|229443081|gb|EEO48872.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229448792|gb|EEO54583.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262356742|gb|EEZ05832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636736|gb|EFF55202.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294446479|gb|EFG15099.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|295085704|emb|CBK67227.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 131 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG R+++ RM ++QE++GE L ++ K E G + +RL I+EVL Sbjct: 1 METDLKKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVL 60 Query: 67 ESPISFFFD 75 F+ Sbjct: 61 NMSALELFN 69 >gi|330985511|gb|EGH83614.1| AraC family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R+ R G++Q +LG G+ + + KYE G + L +++ L Sbjct: 7 ERLAHLRAEKGLTQRELGAAAGVAWSMISKYESGKSAPRLKVLMKLADALGVSAD 61 >gi|312961727|ref|ZP_07776225.1| transcriptional regulator, XRE family with cupin sensor domain [Pseudomonas fluorescens WH6] gi|311283986|gb|EFQ62569.1| transcriptional regulator, XRE family with cupin sensor domain [Pseudomonas fluorescens WH6] Length = 191 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V + +R R +SQ L E G++ + + E G V S L ++E LE S Sbjct: 18 HVSQNVRRLRHAADLSQTALSEKSGVSRRMLVAIEAGEKNVSLSTLDRVAEALEVAFSDL 77 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +E + + + L + Sbjct: 78 IQAPDAPDHSRINELAWAGEIPGSK-AVLLAKA 109 >gi|302063488|ref|ZP_07255029.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 129 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G R+R R G +Q++L E +G + +YE+GV L + L+ + Sbjct: 17 AFIGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPA 75 >gi|301066067|ref|YP_003788090.1| transcriptional regulator [Lactobacillus casei str. Zhang] gi|300438474|gb|ADK18240.1| transcriptional regulator [Lactobacillus casei str. Zhang] Length = 187 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 11/137 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G + +L + G+ + YE+G A L+ ++++ E+ ++ + Sbjct: 3 NRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGTRTPSAEVLKKLADIFETNTAYLMGL 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ-LNRYFIQI----------DDVKVRQKIIELVRS 125 + +++ + F + Q L + I D + I+ S Sbjct: 63 TDAPAETLTNSNLKNIKFEVRSEAFQRLANIVLSIGSEYGGNIDEDSENIVSHILRFYIS 122 Query: 126 IVSSEKKYRTIEEECMV 142 SE + IEE +V Sbjct: 123 SSRSEHLHENIEELQIV 139 >gi|295102882|emb|CBL00427.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 233 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+L R G++Q++ E LG++ + YEKG+ G + +++ + S Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLLGRSA 66 Query: 79 TVCSDISSEEN 89 + S E+ Sbjct: 67 ERNGMMLSAED 77 >gi|269968531|ref|ZP_06182537.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B] gi|269826866|gb|EEZ81194.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B] Length = 210 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V RI+ R L +S + L + GI+ + + EKG S L +S L Sbjct: 26 DFINQAVAARIKEHRKRLKLSLDALSKRAGISKGMLVEVEKGAANPSISTLCKLSAALGI 85 Query: 69 PISFFFDVSPTVCSDISSEEN 89 ++ +V+ +I +E+ Sbjct: 86 SVADIVNVASNPTVNIIDKED 106 >gi|269124932|ref|YP_003298302.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309890|gb|ACY96264.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 383 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPIS 71 +G+ I RRM LGMSQ L +G + V + E+GV++V S L ++ L ++ Sbjct: 6 RRIGENIVRRRMRLGMSQSVLAGLIGRSESWVSQVERGVHKVDRLSVLVTLARALNVEVA 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-KVRQ 117 + P V + + + + R +DD ++R+ Sbjct: 66 DLVNEIPIVKQGNGPDLEGLQRLRRSLEIPDALRDDEIVDDPARLRR 112 >gi|255975390|ref|ZP_05425976.1| prophage Lp1 protein 8 [Enterococcus faecalis T2] gi|255968262|gb|EET98884.1| prophage Lp1 protein 8 [Enterococcus faecalis T2] Length = 125 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +I+ R ++Q+++ + LGIT YE G + LQ ++ + F Sbjct: 5 KIKELRNEKKLTQQEVADYLGITRPAYTAYESGKRQPDFETLQKLATLFNVTTDFL 60 >gi|229160333|ref|ZP_04288331.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] gi|228623057|gb|EEK79885.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] Length = 107 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDETTKEANLDSE 75 >gi|227499743|ref|ZP_03929843.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Anaerococcus tetradius ATCC 35098] gi|227218210|gb|EEI83473.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Anaerococcus tetradius ATCC 35098] Length = 388 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R M+ +LG+ + ++ Q + YE + +S+VL+ P ++F Sbjct: 7 GEKLKTARTYRSMTLAELGKLIDLSKQTLSLYENNKGNPDFETIIKLSKVLKFPTNYFTQ 66 Query: 76 VSPTVCSDISS 86 S S+ Sbjct: 67 ESNNNIKSGST 77 >gi|225374970|ref|ZP_03752191.1| hypothetical protein ROSEINA2194_00593 [Roseburia inulinivorans DSM 16841] gi|225213184|gb|EEG95538.1| hypothetical protein ROSEINA2194_00593 [Roseburia inulinivorans DSM 16841] Length = 85 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 22/56 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 RIR R MSQE LG + T Q V K EK + L ++ + Sbjct: 4 NRIRELRRSHNMSQEALGTIINTTQQAVSKMEKDTCAISTDLLISMARYFNVTTDY 59 >gi|168758877|ref|ZP_02783884.1| I C protein [Escherichia coli O157:H7 str. EC4401] gi|168771404|ref|ZP_02796411.1| DNA binding protein [Escherichia coli O157:H7 str. EC4486] gi|189354385|gb|EDU72804.1| I C protein [Escherichia coli O157:H7 str. EC4401] gi|189359820|gb|EDU78239.1| DNA binding protein [Escherichia coli O157:H7 str. EC4486] Length = 112 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R SQEKL + + I + ++ YE G +Q +++VL+ P + Sbjct: 4 KRLKEAREAANFSQEKLAQLVDIESVNSRSRISNYESGRFTPPFEFIQKVAKVLDYPEGY 63 Query: 73 FFDVSPTVCS 82 F+ Sbjct: 64 FYTSDDDFAE 73 >gi|163857884|ref|YP_001632182.1| anaerobic benzoate catabolism transcriptional regulator [Bordetella petrii DSM 12804] gi|163261612|emb|CAP43914.1| aroK1 [Bordetella petrii] Length = 302 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 19/116 (16%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G+R+R R I GM+++ L + G++ + + E GV L I++ Sbjct: 16 PFLVALGERVRRLRAIRGMTRKSLSQATGVSERHLANLEHGVGNASILVLLQIAKAFNC- 74 Query: 70 ISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + D+++E + + + +S L R R+ +++L Sbjct: 75 ------ALAELVGDVTTESPDWLLIRELLSGRTESDLQRA---------REALVQL 115 >gi|158319286|ref|YP_001511793.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139485|gb|ABW17797.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 428 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 33/141 (23%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG +IR R MSQ++L G+ + + + + E ++ +I+ L++PI + Sbjct: 4 YVGYKIRALRKKKQMSQQELCGDFMNRSI--LSRIENNRMEPSLHQIIYIANKLDTPIHY 61 Query: 73 FF------DVSPTVCSDISSEENN---------VMDFISTPDGL-----QLNRYFI---- 108 FF + P+ ++ E N ++DF + N+Y+ Sbjct: 62 FFYDVDYTENIPSDVQSVTHELQNLFVKESFHKIIDFFNDNHDEFKKLNDFNKYYYLGMS 121 Query: 109 ----QIDDVKVR--QKIIELV 123 +I+ +R +K + L Sbjct: 122 CYHDRINKESLRHLRKYVNLY 142 >gi|30019433|ref|NP_831064.1| SinR protein [Bacillus cereus ATCC 14579] gi|206967979|ref|ZP_03228935.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228920093|ref|ZP_04083442.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228951761|ref|ZP_04113860.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043120|ref|ZP_04190847.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|229068931|ref|ZP_04202225.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|229078565|ref|ZP_04211123.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|229126696|ref|ZP_04255708.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|229143985|ref|ZP_04272401.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|229177788|ref|ZP_04305161.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|296501962|ref|YP_003663662.1| SinR protein [Bacillus thuringiensis BMB171] gi|29894977|gb|AAP08265.1| SinR protein [Bacillus cereus ATCC 14579] gi|206736899|gb|EDZ54046.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228605579|gb|EEK63027.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|228639382|gb|EEK95796.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|228656636|gb|EEL12462.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|228704709|gb|EEL57137.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|228714215|gb|EEL66096.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|228726212|gb|EEL77442.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|228807883|gb|EEM54403.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839549|gb|EEM84841.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296323014|gb|ADH05942.1| SinR protein [Bacillus thuringiensis BMB171] Length = 107 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDETTKETNLDSE 75 >gi|268320250|ref|YP_003293906.1| hypothetical protein FI9785_1788 [Lactobacillus johnsonii FI9785] gi|262398625|emb|CAX67639.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 161 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++I+ R ++QE++ + L +T Q + +E N + I++ + Sbjct: 5 EQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAKTFGVSLD 59 >gi|213972069|ref|ZP_03400162.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] gi|213923155|gb|EEB56757.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] Length = 118 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G R+R R G +Q++L E +G + +YE+GV L + L+ + Sbjct: 6 AFIGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPA 64 >gi|116327751|ref|YP_797471.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120495|gb|ABJ78538.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 204 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V + ++L R G S +KL G++ + + E+G + S L I+ L P S Sbjct: 24 VKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSELL 83 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + EN + F S+ Sbjct: 84 KEKGAEGVIVMKAENTKVLFSSSK 107 >gi|114321708|ref|YP_743391.1| XRE family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114228102|gb|ABI57901.1| transcriptional regulator, XRE family [Alkalilimnicola ehrlichii MLHE-1] Length = 86 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K ++++VG+ +R+ R + MSQ +L GI + E R+G R + Sbjct: 1 MSEYRKARKRLEVSVGESVRIMRELQEMSQNELARATGIPQSTISAIENDRVRLGVDRAK 60 Query: 61 HISEVLESPIS 71 ++ L + Sbjct: 61 VLARALRCHPA 71 >gi|116054262|ref|YP_788706.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296387039|ref|ZP_06876538.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313111831|ref|ZP_07797624.1| putative transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa 39016] gi|115589483|gb|ABJ15498.1| putative transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa UCBPP-PA14] gi|310884126|gb|EFQ42720.1| putative transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa 39016] Length = 184 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ + L + + + V + E+G++R L IS+VL P ++FF Sbjct: 15 VRELRKRKGITLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVPATYFFCSPK 74 Query: 79 TVCS 82 T S Sbjct: 75 TQAS 78 >gi|294992441|gb|ADF57361.1| hypothetical repressor protein [Roseburia inulinivorans DSM 16841] Length = 68 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 22/56 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 RIR R MSQE LG + T Q V K EK + L ++ + Sbjct: 4 NRIRELRRSHNMSQEALGTIINTTQQAVSKMEKDTCAISTDLLISMARYFNVTTDY 59 >gi|291531440|emb|CBK97025.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 108 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI RR LG+ Q ++ E + + ++ + E G + + + VL + +F Sbjct: 8 LGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNATPDYFL 67 Query: 75 DVSPTVC---SDISSEENNVMD 93 + + +DI+S+ + D Sbjct: 68 LGTASAELYDNDIASKITPMTD 89 >gi|291530482|emb|CBK96067.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 209 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLKGETDEYETDITDKKE 85 >gi|238062141|ref|ZP_04606850.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883952|gb|EEP72780.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 189 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 2/93 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R GMS L G+ + E G L ++ L P++ Sbjct: 22 VGARVRALREERGMSLSTLARLAGVGKATLSGLENGTRNPTLETLYAVTAQLGVPLTAAL 81 Query: 75 DVSPTVCSDISSE-ENNVMDFISTPDG-LQLNR 105 + + +++ + + +L R Sbjct: 82 SGPAATPTVRGTAVSATLLEVFTEAEATFELYR 114 >gi|226938551|ref|YP_002802313.1| hypothetical protein pCC3_03 [Leuconostoc citreum] gi|229587262|ref|YP_002860113.1| hypothetical protein pFMBL1_p3 [Leuconostoc citreum] gi|209165330|gb|ACI41226.1| hypothetical protein [Leuconostoc citreum] gi|225380896|gb|ACN88702.1| hypothetical protein [Leuconostoc citreum] Length = 204 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R G++Q++L + +T + VQ+ E G + V S L I+ L PIS FD Sbjct: 5 NVSQLRKQHGLTQQELADKSYVTIRTVQRLEAGED-VSLSSLSAIANALSVPISGLFDDI 63 Query: 78 PTVCSDISSEENNVMDF 94 +E ++D+ Sbjct: 64 EQK-----EKEQEILDY 75 >gi|16800829|ref|NP_471097.1| hypothetical protein lin1761 [Listeria innocua Clip11262] gi|16414248|emb|CAC96992.1| lin1761 [Listeria innocua Clip11262] Length = 74 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G++Q++L E L + V +E G + G S + +L+ +SF F Sbjct: 10 RKEKGLTQQELAEKLQVRKSTVSNWETGYSSPGISTAIQTAIILDKDVSFLF 61 >gi|89096842|ref|ZP_01169733.1| hypothetical protein B14911_18095 [Bacillus sp. NRRL B-14911] gi|89101363|ref|ZP_01174151.1| hypothetical protein B14911_05451 [Bacillus sp. NRRL B-14911] gi|89083922|gb|EAR63135.1| hypothetical protein B14911_05451 [Bacillus sp. NRRL B-14911] gi|89088222|gb|EAR67332.1| hypothetical protein B14911_18095 [Bacillus sp. NRRL B-14911] Length = 91 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ MSQ++L E +G++ Q + EKG I+E + ++ F Sbjct: 21 ISNKVYEYRVLARMSQQELAEQVGVSKQTIFVMEKGNYVPTLLLAFRIAEFFKVDVNDIF 80 >gi|15900264|ref|NP_344868.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|15902345|ref|NP_357895.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|111657195|ref|ZP_01407970.1| hypothetical protein SpneT_02001592 [Streptococcus pneumoniae TIGR4] gi|116515521|ref|YP_815820.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148983739|ref|ZP_01817058.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71] gi|148988089|ref|ZP_01819552.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73] gi|148996747|ref|ZP_01824465.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|149013057|ref|ZP_01833923.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75] gi|149018025|ref|ZP_01834484.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72] gi|168484208|ref|ZP_02709160.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|168486615|ref|ZP_02711123.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|168490753|ref|ZP_02714896.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168576734|ref|ZP_02722592.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|169833560|ref|YP_001693853.1| hypothetical protein SPH_0443 [Streptococcus pneumoniae Hungary19A-6] gi|194396813|ref|YP_002037017.1| transcriptional regulator [Streptococcus pneumoniae G54] gi|225853916|ref|YP_002735428.1| hypothetical protein SPJ_0326 [Streptococcus pneumoniae JJA] gi|225856074|ref|YP_002737585.1| hypothetical protein SPP_0367 [Streptococcus pneumoniae P1031] gi|225858186|ref|YP_002739696.1| hypothetical protein SP70585_0396 [Streptococcus pneumoniae 70585] gi|298254745|ref|ZP_06978331.1| hypothetical protein SpneCM_03900 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502137|ref|YP_003724077.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259428|ref|ZP_07345405.1| hypothetical protein CGSSp9vBS293_07336 [Streptococcus pneumoniae SP-BS293] gi|303261183|ref|ZP_07347132.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae SP14-BS292] gi|303263510|ref|ZP_07349433.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae BS397] gi|303265803|ref|ZP_07351701.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae BS457] gi|303267766|ref|ZP_07353568.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae BS458] gi|307066993|ref|YP_003875959.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|307704192|ref|ZP_07641115.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|1536960|emb|CAB01931.1| yorfE [Streptococcus pneumoniae] gi|14971806|gb|AAK74508.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|15457855|gb|AAK99105.1| Transcription regulator [Streptococcus pneumoniae R6] gi|116076097|gb|ABJ53817.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147757322|gb|EDK64361.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|147763092|gb|EDK70034.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75] gi|147923886|gb|EDK74998.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71] gi|147926553|gb|EDK77626.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73] gi|147931589|gb|EDK82567.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72] gi|168996062|gb|ACA36674.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|172042565|gb|EDT50611.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|183570358|gb|EDT90886.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|183574941|gb|EDT95469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183577574|gb|EDT98102.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194356480|gb|ACF54928.1| transcriptional regulator, putative [Streptococcus pneumoniae G54] gi|225720654|gb|ACO16508.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|225723727|gb|ACO19580.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|225726347|gb|ACO22199.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|298237732|gb|ADI68863.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793585|emb|CBW35962.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|301799462|emb|CBW32002.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] gi|301801258|emb|CBW33933.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302638020|gb|EFL68506.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae SP14-BS292] gi|302639362|gb|EFL69820.1| hypothetical protein CGSSpBS293_07336 [Streptococcus pneumoniae SP-BS293] gi|302642462|gb|EFL72807.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae BS458] gi|302644711|gb|EFL74960.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae BS457] gi|302647283|gb|EFL77507.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae BS397] gi|306408530|gb|ADM83957.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|307622223|gb|EFO01237.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|332077619|gb|EGI88080.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332203500|gb|EGJ17567.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] gi|332204335|gb|EGJ18400.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 64 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG+SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|331084051|ref|ZP_08333158.1| hypothetical protein HMPREF0992_02082 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402413|gb|EGG81983.1| hypothetical protein HMPREF0992_02082 [Lachnospiraceae bacterium 6_1_63FAA] Length = 213 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 ++ RM G +Q++L + G++ + +Q YE K +N+ A L +S++L I Sbjct: 152 NLKRIRMTYGFTQKELADNSGVSLRSIQMYEQRHKNINKASAETLYRLSKILGCTIEDLM 211 Query: 75 D 75 + Sbjct: 212 E 212 >gi|320322230|gb|EFW78326.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331879|gb|EFW87817.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 199 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 8/108 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G K + ++VG+R++ R + G+SQ +L + G+T + EK S L+ Sbjct: 7 TGPDKTWGNIALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR- 65 Query: 62 ISEVL-ESPISF--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +VL P+S FF + P + + + + ++D ++L Sbjct: 66 --KVLGGIPMSMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLV 111 >gi|312905524|ref|ZP_07764638.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|310631253|gb|EFQ14536.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 270 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 +D VG RIR R L +S EK G+ +G + V +E+G+N L I+E+ Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEI 59 >gi|299535208|ref|ZP_07048532.1| MerR family transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298729329|gb|EFI69880.1| MerR family transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 129 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGE---CLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+++R+ R+ G+SQE++ E LG + +V E G + + S L+ I + L+ Sbjct: 6 KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLETIMKALDIT 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFIST 97 F+ E+N ++D + Sbjct: 66 PEELFNFQKLSGVTDIEEKNLMLDIHRS 93 >gi|291523416|emb|CBK81709.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 209 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLKGETDEYETDITDKKE 85 >gi|293414771|ref|ZP_06657420.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185] gi|291434829|gb|EFF07802.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185] Length = 178 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVMDFIS 96 + + + M IS Sbjct: 72 SATPSVYDPQQQAMVIIS 89 >gi|293433580|ref|ZP_06662008.1| DNA-binding protein [Escherichia coli B088] gi|291324399|gb|EFE63821.1| DNA-binding protein [Escherichia coli B088] Length = 200 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I + V+ V +RI+L R +S ++L G++ + + E + L Sbjct: 8 MTDVNSIVSTVNEAVSQRIKLYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSITMLC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 ++ + ++ F DVS + +E + G Sbjct: 68 RLAAAMGVSVADFVDVSSKPTVHLITESEIPELWEGEKGG 107 >gi|256025208|ref|ZP_05439073.1| hypothetical protein E4_17688 [Escherichia sp. 4_1_40B] gi|301325184|ref|ZP_07218708.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|300847945|gb|EFK75705.1| helix-turn-helix protein [Escherichia coli MS 78-1] Length = 185 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ G+SQE + G + + E+G + ++ ++ L Sbjct: 32 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 91 Query: 67 ESPISFFFDVSPTVCSD 83 P+ +D Sbjct: 92 SVEPWQLLAPGPSEDND 108 >gi|149003138|ref|ZP_01828047.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] gi|237651078|ref|ZP_04525330.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus pneumoniae CCRI 1974] gi|237821191|ref|ZP_04597036.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus pneumoniae CCRI 1974M2] gi|147758879|gb|EDK65875.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] Length = 207 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+++ E LG + + Q+ E G +++ + Q +++ + + Sbjct: 2 NRLKELRQKNELSQKEIAEILGFSLRSFQRMENGESQIKPEKAQQLADFFGVSVGYL 58 >gi|82777001|ref|YP_403350.1| hypothetical protein SDY_1742 [Shigella dysenteriae Sd197] gi|81241149|gb|ABB61859.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 178 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVMDFIS 96 + + + M IS Sbjct: 72 SATPSVYDPQQQAMVIIS 89 >gi|15801709|ref|NP_287727.1| hypothetical protein Z2285 [Escherichia coli O157:H7 EDL933] gi|15831292|ref|NP_310065.1| hypothetical protein ECs2037 [Escherichia coli O157:H7 str. Sakai] gi|168748967|ref|ZP_02773989.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|168759171|ref|ZP_02784178.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|168761476|ref|ZP_02786483.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|168769035|ref|ZP_02794042.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|168774335|ref|ZP_02799342.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|168781404|ref|ZP_02806411.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|168788512|ref|ZP_02813519.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|168799439|ref|ZP_02824446.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|195936926|ref|ZP_03082308.1| hypothetical protein EscherichcoliO157_10762 [Escherichia coli O157:H7 str. EC4024] gi|208810881|ref|ZP_03252714.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208815156|ref|ZP_03256335.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208818249|ref|ZP_03258569.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209397754|ref|YP_002270440.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|217329087|ref|ZP_03445167.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254792977|ref|YP_003077814.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|261224380|ref|ZP_05938661.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261257365|ref|ZP_05949898.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|291282537|ref|YP_003499355.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|12515268|gb|AAG56341.1|AE005362_11 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361504|dbj|BAB35461.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770139|gb|EDU33983.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188016678|gb|EDU54800.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|189000937|gb|EDU69923.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189354230|gb|EDU72649.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189361883|gb|EDU80302.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189368111|gb|EDU86527.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189371782|gb|EDU90198.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189378128|gb|EDU96544.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|208724387|gb|EDZ74095.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208731804|gb|EDZ80492.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208738372|gb|EDZ86054.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209159154|gb|ACI36587.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209771028|gb|ACI83826.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771030|gb|ACI83827.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771032|gb|ACI83828.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771034|gb|ACI83829.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771036|gb|ACI83830.1| hypothetical protein ECs2037 [Escherichia coli] gi|217317526|gb|EEC25954.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254592377|gb|ACT71738.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|290762410|gb|ADD56371.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|320190111|gb|EFW64762.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. EC1212] gi|320637032|gb|EFX06893.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. G5101] gi|320642399|gb|EFX11685.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320647755|gb|EFX16500.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320653362|gb|EFX21499.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659028|gb|EFX26651.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320663862|gb|EFX31090.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] gi|326340694|gb|EGD64491.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. 1044] gi|326340945|gb|EGD64738.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. 1125] Length = 178 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVMDFIS 96 + + + M IS Sbjct: 72 SATPSVYDPQQQAMVIIS 89 >gi|300917947|ref|ZP_07134577.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] gi|300414844|gb|EFJ98154.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] Length = 73 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G+++R R G++ EKL + G++ + + E + R A +L +++ L SFF Sbjct: 5 LGEKLRDLRKQRGLTLEKLADMAGLSKSYLWELENRESQRPSAEKLTALADALGVGTSFF 64 Query: 74 FDVS 77 + Sbjct: 65 LEDD 68 >gi|238925837|ref|YP_002939355.1| hypothetical protein EUBREC_3495 [Eubacterium rectale ATCC 33656] gi|238877514|gb|ACR77221.1| Hypothetical protein EUBREC_3495 [Eubacterium rectale ATCC 33656] gi|295098807|emb|CBK87896.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 209 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLKGETDEYETDITDKKE 85 >gi|257063253|ref|YP_003142925.1| hypothetical protein Shel_05170 [Slackia heliotrinireducens DSM 20476] gi|256790906|gb|ACV21576.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM 20476] Length = 436 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G I R G++Q +L + +G+T + V K+E G ++ ++ +S + + Sbjct: 3 DYAFGNYIFHLRKQAGLTQAELAKLVGVTNKAVSKWEVGKSKPSVESVRKLSGLFHVSVD 62 >gi|257065249|ref|YP_003144921.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792902|gb|ACV23572.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 194 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK I+ R GMSQE+L + + ++ Q V +E + L I+E+ + I Sbjct: 1 MEVGKTIKDLRTRSGMSQEELAKNVFVSRQTVSSWENEKSYPDVQSLALIAELFNTSIDA 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|225571208|ref|ZP_03780206.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] gi|225160039|gb|EEG72658.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] Length = 114 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RL R G+SQ++L LGI+ V YE+G + L+ I++ + + Sbjct: 14 LRLLRNGRGLSQQELALSLGISKSAVNMYERGERQPNFETLELIADFFKVDTDYL 68 >gi|210631905|ref|ZP_03297117.1| hypothetical protein COLSTE_01007 [Collinsella stercoris DSM 13279] gi|210159830|gb|EEA90801.1| hypothetical protein COLSTE_01007 [Collinsella stercoris DSM 13279] Length = 212 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG---VNRVGASRLQHISEVLESP 69 R++ R G+SQ +L G+ + +Q+YE+G VNR + +++ + +P Sbjct: 149 SRLKKYRTSAGLSQSQLAALSGVPVRSIQQYEQGQKRVNRASFETVLRLAQAVGAP 204 >gi|170780657|ref|YP_001708989.1| putative DNA-binding membrane protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155225|emb|CAQ00326.1| putative DNA-binding membrane protein [Clavibacter michiganensis subsp. sepedonicus] Length = 173 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI R G +Q++L E GIT + VQ+ E G N L +++ LE P+ F Sbjct: 5 RIVELRRERGWTQDRLAEASGITVRTVQRLEAG-NDASLETLSLVAKALEVPVRDLF 60 >gi|188587111|ref|YP_001918656.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351798|gb|ACB86068.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 118 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G++IR+ R G +QE++ + + Q++ + EKG+ + S + I+ +L+ Sbjct: 5 LGEQIRVLRESAGKTQEEIAFKMNCSRQKIARIEKGLVDISYSNILDIARILQISP 60 >gi|166032258|ref|ZP_02235087.1| hypothetical protein DORFOR_01961 [Dorea formicigenerans ATCC 27755] gi|166027981|gb|EDR46738.1| hypothetical protein DORFOR_01961 [Dorea formicigenerans ATCC 27755] Length = 213 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ M+Q++L + G+ ++ YE G + L +I+ L F+ Sbjct: 9 VGYLIRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVS---FY 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 +S ++I S + + D Sbjct: 66 ALSDPDVANIFSALHVLFDI 85 >gi|150378302|ref|YP_001314896.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032849|gb|ABR64963.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 165 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 12/128 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE-S 68 +D + ++ R G+S+ L LG++ +YE+G R+ RL H+ E++ Sbjct: 40 MDEKISAWLKKTREAKGISRADLAHLLGLSVSVYGRYERGSEARLSIPRLIHLCEIIGFM 99 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 P+ FD +P + E + L + + +R +I L++ + Sbjct: 100 PLDIIFDTAPHLWGKTPEEAEDRK---------MLTKIVESLPHDTIRD-LIRLMKRMTP 149 Query: 129 SEKKYRTI 136 E T+ Sbjct: 150 GEPSTDTV 157 >gi|15485444|emb|CAC67538.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 111 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R ++Q +L LGI +E+G + L I+++L + + Sbjct: 1 MEFSERLKELRKQAHLTQVELASKLGIVQSSYADWERGKKKPTQENLVKIAQILNVSVDY 60 Query: 73 FFDVSPTVCSDISSEE 88 S ++ + E Sbjct: 61 LVGNSEEKNDELDNIE 76 >gi|30018346|ref|NP_829977.1| XRE family transcriptional regulator [Bacillus cereus ATCC 14579] gi|218235456|ref|YP_002364925.1| DNA-binding protein [Bacillus cereus B4264] gi|228919025|ref|ZP_04082405.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228956516|ref|ZP_04118313.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|229107761|ref|ZP_04237398.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15] gi|229125592|ref|ZP_04254625.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4] gi|229142881|ref|ZP_04271323.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24] gi|229148484|ref|ZP_04276741.1| Transcriptional regulator Xre [Bacillus cereus m1550] gi|296500908|ref|YP_003662608.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|29893886|gb|AAP07178.1| Transcriptional regulator, Xre family [Bacillus cereus ATCC 14579] gi|218163413|gb|ACK63405.1| DNA-binding protein [Bacillus cereus B4264] gi|228635026|gb|EEK91598.1| Transcriptional regulator Xre [Bacillus cereus m1550] gi|228640593|gb|EEK96981.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24] gi|228657909|gb|EEL13714.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4] gi|228675734|gb|EEL30941.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15] gi|228803206|gb|EEM50027.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|228840674|gb|EEM85935.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321960|gb|ADH04888.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 67 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 61 >gi|329937439|ref|ZP_08286997.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329303315|gb|EGG47202.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 232 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V +RIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 11 DLDGLVRRRIRALRVAQGWSLEELAARARLSQSTLSRIETGRRRLALDQLVTLARALDTS 70 Query: 70 ISFFFDVS 77 + + + Sbjct: 71 LDQLVETA 78 >gi|325833141|ref|ZP_08165689.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485697|gb|EGC88164.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 71 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R ++Q+ L +G T V E G + RL I++ L Sbjct: 9 VRLGAAIRAERRRQNITQQVLAGMIGTTQDYVSDLEAGEYNIKVGRLWQIADALGVHPGD 68 Query: 73 FF 74 Sbjct: 69 LM 70 >gi|289769326|ref|ZP_06528704.1| DNA-binding protein [Streptomyces lividans TK24] gi|289699525|gb|EFD66954.1| DNA-binding protein [Streptomyces lividans TK24] Length = 198 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G++ L G++ + + E G R L ++ + + P+ Sbjct: 20 VGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDL 78 >gi|270291339|ref|ZP_06197561.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|304385092|ref|ZP_07367438.1| possible transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|270280185|gb|EFA26021.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|304329286|gb|EFL96506.1| possible transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 66 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+++ R+ +SQ +L +G+T Q + E G I + L+ + F Sbjct: 4 QRLKIARLEKDLSQAELANLIGVTRQTIGLIEAGNYNPTLKLCVAICQALDKTLDDLFWE 63 Query: 77 SPT 79 P+ Sbjct: 64 DPS 66 >gi|323343150|ref|ZP_08083381.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463214|gb|EFY08409.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 136 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R ++Q+K+ + L ++ Q V +E+G A L ISE P+ Sbjct: 6 NLKRLREENALTQDKVAQSLNVSRQAVSNWEQGKRYPDAIMLIQISEFYGVPVDDLLKSD 65 Query: 78 PTVCSDISSEENNVMDFI 95 + ++ + + Sbjct: 66 RDYAKALVIDKARFEEVL 83 >gi|82703914|ref|YP_413478.1| helix-hairpin-helix DNA-binding motif-containing protein [Nitrosospira multiformis ATCC 25196] gi|82411979|gb|ABB76086.1| transcriptional regulator, XRE family [Nitrosospira multiformis ATCC 25196] Length = 106 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 19/115 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G++IR R L ++ E+L E G + + + E + V R A ++ ISEV P+ F Sbjct: 5 LGEKIRTERKRLKLTLEELAEKTGSSKSYIWELENRPVVRPSAEKISKISEVFGVPVEFL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSI 126 D + S+ + V F +I D R ++ + +++I Sbjct: 65 LDDAKHEL--TPSDADQVF--------------FRRITQLDPAKRAQLEKFLKAI 103 >gi|310639686|ref|YP_003944444.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309244636|gb|ADO54203.1| Predicted transcriptional regulator [Paenibacillus polymyxa SC2] Length = 116 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R L ++QEKL E + ++ + + E+G + L ++ L S + + Sbjct: 6 LGTRIRQERQRLNLTQEKLAERVDLSHAYIGQIERGERSLSLETLVKLANELGSTVDYLL 65 Query: 75 DVSPTVCSDI 84 + V + Sbjct: 66 SEAVEVKDEA 75 >gi|296451357|ref|ZP_06893095.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296880293|ref|ZP_06904258.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|296259773|gb|EFH06630.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296428736|gb|EFH14618.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 106 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFF 73 KR+R R G++Q +LGE +G++ + + YE NR + +++V + + + Sbjct: 4 KRLRELRKEFGLTQRELGEKVGVSQRVLGYYET-ENRFPDEHILNKLADVFDVSVDYL 60 >gi|291551231|emb|CBL27493.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 209 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLKGETDEYETDITDKKE 85 >gi|257065055|ref|YP_003144727.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792708|gb|ACV23378.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 338 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L +G++ Q V K+E +L IS++ + I Sbjct: 6 NLQYLRSTRSMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKISQIFDCTIDELVQGD 65 Query: 78 PTVCSDISSEENNVMDFISTP 98 DI E+ +D S Sbjct: 66 -LTHRDIQPEKAMPVDMSSDS 85 >gi|21218919|ref|NP_624698.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|6066657|emb|CAB58317.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 200 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 10 DLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTT 69 Query: 70 ISFFFDVSPT 79 + + + Sbjct: 70 LDQLVETADE 79 >gi|238783913|ref|ZP_04627930.1| Predicted transcriptional regulator [Yersinia bercovieri ATCC 43970] gi|238715152|gb|EEQ07147.1| Predicted transcriptional regulator [Yersinia bercovieri ATCC 43970] Length = 87 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 28 MSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 MSQ+KLG G + ++ +YEKGV+ V + +++VLE P+++F+ + Sbjct: 1 MSQKKLGIAAGLDEFVASTRINRYEKGVHEVSIEMAKQLADVLEVPLAYFYTADDVLAE 59 >gi|30018872|ref|NP_830503.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|30260845|ref|NP_843222.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42779842|ref|NP_977089.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47525976|ref|YP_017325.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183686|ref|YP_026938.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49476873|ref|YP_034951.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144616|ref|YP_082212.1| transcriptional regulator [Bacillus cereus E33L] gi|65318122|ref|ZP_00391081.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|118476376|ref|YP_893527.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|163938619|ref|YP_001643503.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165872916|ref|ZP_02217540.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635166|ref|ZP_02393482.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641831|ref|ZP_02400071.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170689445|ref|ZP_02880636.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170709002|ref|ZP_02899433.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177652794|ref|ZP_02935167.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190568571|ref|ZP_03021477.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196042062|ref|ZP_03109347.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047106|ref|ZP_03114324.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206977794|ref|ZP_03238684.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217958280|ref|YP_002336826.1| DNA-binding protein [Bacillus cereus AH187] gi|218901889|ref|YP_002449723.1| DNA-binding protein [Bacillus cereus AH820] gi|222094450|ref|YP_002528509.1| transcriptional regulator [Bacillus cereus Q1] gi|225862672|ref|YP_002748050.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227816434|ref|YP_002816443.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228906448|ref|ZP_04070329.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229010123|ref|ZP_04167337.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|229056462|ref|ZP_04195875.1| Transcriptional regulator [Bacillus cereus AH603] gi|229089756|ref|ZP_04221016.1| Transcriptional regulator [Bacillus cereus Rock3-42] gi|229108302|ref|ZP_04237921.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|229120344|ref|ZP_04249594.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|229126121|ref|ZP_04255142.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|229131641|ref|ZP_04260523.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|229137494|ref|ZP_04266105.1| Transcriptional regulator [Bacillus cereus BDRD-ST26] gi|229143419|ref|ZP_04271848.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|229165635|ref|ZP_04293408.1| Transcriptional regulator [Bacillus cereus AH621] gi|229183027|ref|ZP_04310259.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] gi|229195018|ref|ZP_04321795.1| Transcriptional regulator [Bacillus cereus m1293] gi|229602348|ref|YP_002865290.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254684228|ref|ZP_05148088.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254725890|ref|ZP_05187672.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734410|ref|ZP_05192123.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742096|ref|ZP_05199783.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755782|ref|ZP_05207815.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762352|ref|ZP_05214196.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|296501446|ref|YP_003663146.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|301052344|ref|YP_003790555.1| transcriptional regulator [Bacillus anthracis CI] gi|29894414|gb|AAP07704.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|30254294|gb|AAP24708.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42735759|gb|AAS39697.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47501124|gb|AAT29800.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177613|gb|AAT52989.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49328429|gb|AAT59075.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978085|gb|AAU19635.1| transcriptional regulator [Bacillus cereus E33L] gi|118415601|gb|ABK84020.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|163860816|gb|ABY41875.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|164711329|gb|EDR16882.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510179|gb|EDR85585.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529425|gb|EDR92176.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126104|gb|EDS95000.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170666607|gb|EDT17379.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081828|gb|EDT66897.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190560365|gb|EDV14344.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196022087|gb|EDX60776.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196027087|gb|EDX65709.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206743991|gb|EDZ55408.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065587|gb|ACJ79837.1| DNA-binding protein [Bacillus cereus AH187] gi|218536097|gb|ACK88495.1| DNA-binding protein [Bacillus cereus AH820] gi|221238507|gb|ACM11217.1| transcriptional regulator [Bacillus cereus Q1] gi|225788360|gb|ACO28577.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005797|gb|ACP15540.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228588453|gb|EEK46494.1| Transcriptional regulator [Bacillus cereus m1293] gi|228600484|gb|EEK58072.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] gi|228617870|gb|EEK74922.1| Transcriptional regulator [Bacillus cereus AH621] gi|228640047|gb|EEK96448.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228646052|gb|EEL02275.1| Transcriptional regulator [Bacillus cereus BDRD-ST26] gi|228651867|gb|EEL07822.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228657328|gb|EEL13145.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|228663154|gb|EEL18744.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|228675139|gb|EEL30364.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|228693564|gb|EEL47267.1| Transcriptional regulator [Bacillus cereus Rock3-42] gi|228720936|gb|EEL72485.1| Transcriptional regulator [Bacillus cereus AH603] gi|228751256|gb|EEM01068.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|228853175|gb|EEM97951.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229266756|gb|ACQ48393.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|296322498|gb|ADH05426.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|300374513|gb|ADK03417.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 66 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|323443643|gb|EGB01257.1| transcriptional regulator [Staphylococcus aureus O46] Length = 391 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|310818410|ref|YP_003950768.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309391482|gb|ADO68941.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 270 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 20/121 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPISFFF 74 G +RL R+ G+S L + +G++ + + E G++ V +R+ I+ L+ P + Sbjct: 2 GATLRLLRVEAGLSLRDLAKRIGVSSAYLSRVEHGLDAVPTPARISAIARELDIPPTLLM 61 Query: 75 DVSPTVCSDISSEENNVMDFIST-----PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 DV + V F+++ P+ QL F++I ++ ++ + +R ++++ Sbjct: 62 DV-----------AHRVSPFMASYLEQEPEAGQL---FLEIAQRQLNRQQLSRLRQLLNA 107 Query: 130 E 130 E Sbjct: 108 E 108 >gi|326315473|ref|YP_004233145.1| helix-turn-helix domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372309|gb|ADX44578.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 189 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 V + +R R G+SQ L E G++ + + E G + + L ++ L Sbjct: 16 AFVSENLRRLRAEAGLSQLALAEAAGLSRRMISSLEAGDTNISLASLDRLAAALGV 71 >gi|257869016|ref|ZP_05648669.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257803180|gb|EEV32002.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 397 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I RR ++Q +L + + ++ V K+E G + + L ++ + + Sbjct: 5 IGQEIAKRRKDKQITQTELADFMSVSKASVSKWETGQSYPDITLLPLLAAFFDCSVD--- 61 Query: 75 DVSPTVCSDISSEENNVMDFI-------STPDGLQLNRYFIQ 109 D+ + E + + S D L + R FI+ Sbjct: 62 DLLVINSQLTTQEIKRIYQLLKDSFETKSADDVLLMLRGFIR 103 >gi|229073601|ref|ZP_04206721.1| transcriptional regulator [Bacillus cereus F65185] gi|228709534|gb|EEL61588.1| transcriptional regulator [Bacillus cereus F65185] Length = 186 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK+I R MSQE+L + ++ Q + +E N L +S + + Sbjct: 1 MNIGKQIHYFRKRDNMSQEELAAKIHVSRQSISNWENERNYPDIHNLLIMSILFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|227508228|ref|ZP_03938277.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192457|gb|EEI72524.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 244 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 ++ G+++++RR L ++Q +L + L +T Q V ++E L +S+ Sbjct: 1 MDFGEQLQIRRKQLNLTQAQLAQKLHVTRQTVSRWENNATYPNLDILVEMSDF 53 >gi|116511497|ref|YP_808713.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107151|gb|ABJ72291.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 85 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R+ +G++Q +L E L + Q V +EKG L+ ++ + + Sbjct: 28 NIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNIETLKALATLFNISVD 81 >gi|85709950|ref|ZP_01041015.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] gi|85688660|gb|EAQ28664.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] Length = 63 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R SQ+ L + LG++ Q V EKG +ISEV PI F Sbjct: 3 NRLKVLRAERDWSQQDLADRLGVSRQSVNAIEKGRYDPSLPLAFNISEVFGLPIEEIF 60 >gi|330470351|ref|YP_004408094.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328813322|gb|AEB47494.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 226 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K +P+ VG IR R +S +L E G++ + + E+G+ R A LQ Sbjct: 1 MATSKDLPD-----VGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRRPSAEVLQ 55 Query: 61 HISEVLESP 69 ++ L Sbjct: 56 QLASALRVS 64 >gi|323353576|ref|ZP_08088109.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121522|gb|EFX93285.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 170 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFIS 96 F S + + S E N D +S Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS 90 >gi|262371152|ref|ZP_06064473.1| RtrR protein [Acinetobacter johnsonii SH046] gi|262313882|gb|EEY94928.1| RtrR protein [Acinetobacter johnsonii SH046] Length = 70 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + I +G+ IR +R +QE L GI + + E+G + +L I+ +L+ Sbjct: 4 LSIEIGQLIRKKRKEKKFTQEALALQCGIDRSYLGRIERGEVNITVLKLYEIAHILKV 61 >gi|83648921|ref|YP_437356.1| Zn peptidase [Hahella chejuensis KCTC 2396] gi|83636964|gb|ABC32931.1| predicted Zn peptidase [Hahella chejuensis KCTC 2396] Length = 387 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R L R G+++ L + +G+T + + YE G + ++ I+ L P+ FFF Sbjct: 6 RFALARKRRGLTKRALAKEVGVTDRSITAYESGQTVPESQTVEKIASALRFPVEFFF--- 62 Query: 78 PTVCSDISSEENNVMDF 94 D+ V F Sbjct: 63 ---ADDVEELPVEVASF 76 >gi|154244764|ref|YP_001415722.1| helix-turn-helix domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158849|gb|ABS66065.1| helix-turn-helix domain protein [Xanthobacter autotrophicus Py2] Length = 425 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS--RLQHISEVLESPISFFFDVSP 78 R+ GMSQ L E L + QQVQ+YE + +GAS RL IS+ L S F+ Sbjct: 82 QARIASGMSQTDLAEKLRMKPQQVQRYE-ATDYMGASLGRLIEISKALGVKASGSFEGPK 140 Query: 79 TVCSDI 84 + Sbjct: 141 PAGGSV 146 >gi|150017576|ref|YP_001309830.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904041|gb|ABR34874.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 343 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 47/100 (47%), Gaps = 2/100 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR R ++QE++ + L ++ V K+E GV+ + L ++ VL+ ++ Sbjct: 1 MMISEVIRHYRKKENLTQEQVADYLNVSTPAVNKWENGVSYPDITLLPPLARVLKIDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + + + ++ +G++ + F + +D Sbjct: 61 LLAFNEELTDTEVKKLTKEVGETASKEGIK--KAFEKGND 98 >gi|325697795|gb|EGD39679.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] gi|327466976|gb|EGF12490.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 170 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFIS 96 F S + + S E N D +S Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS 90 >gi|311279146|ref|YP_003941377.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748341|gb|ADO48093.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 129 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 13/109 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R +SQ +L + G T +V YE GV +G ++ +L++ SF Sbjct: 8 IGERLKALRESKNLSQAQLSKLCGWATASRVGNYELGVRNIGVDDAVVLARILDTSPSFL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + E+ ++ + F Q+ + + + ++I+L Sbjct: 68 LFGDEVSQGNELPEKQ-----------RRMLKLFTQLPESE-QDRMIDL 104 >gi|312198964|ref|YP_004019025.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311230300|gb|ADP83155.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 221 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 32/79 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++R R G++ +L GI+ + K E + L +++ L+ P+ Sbjct: 32 LERLIAAQVRRLRQGAGLTLAELATRSGISKPMLSKIENANTSCSLTTLARLADALDVPV 91 Query: 71 SFFFDVSPTVCSDISSEEN 89 + F + + + Sbjct: 92 TALFRGADDQREAVFTPAG 110 >gi|229039980|ref|ZP_04189744.1| Transcriptional regulator Xre [Bacillus cereus AH676] gi|228727388|gb|EEL78581.1| Transcriptional regulator Xre [Bacillus cereus AH676] Length = 82 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 22 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 76 >gi|262200762|ref|YP_003271970.1| hypothetical protein Gbro_0761 [Gordonia bronchialis DSM 43247] gi|262084109|gb|ACY20077.1| Protein of unknown function DUF2083,transcriptional regulator [Gordonia bronchialis DSM 43247] Length = 475 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L ++ + + E + L HI+E FF Sbjct: 5 YVGSRLRQLRSERGLSQVALAQTLSLSPSYLNQIEHDARPLTPKVLSHITEAFGVDAGFF 64 >gi|188589861|ref|YP_001921889.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E3 str. Alaska E43] gi|188500142|gb|ACD53278.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E3 str. Alaska E43] Length = 160 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 13/110 (11%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFDVS 77 IR RR L ++ E+LG+ +G+ V+K+E G+ + + + +++ L S Sbjct: 7 IRKRREELDLTYEQLGKIVGVGKSTVRKWETGMIGNLRSDNILALAKGLNLSPSTLMGW- 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVR 124 +EE N DF T + +L ++ +++D + +++ EL Sbjct: 66 --------TEEENTYDFNLTKEETKLLEHYNKLNDLGKKEANKRVAELTE 107 >gi|160937081|ref|ZP_02084444.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC BAA-613] gi|158439982|gb|EDP17730.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC BAA-613] Length = 119 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GKRI+++R+ M+QEKL E G++ + E G +V L I+ LE Sbjct: 8 IGKRIKIQRIQREMTQEKLAELTGLSNPHISNVETGSTQVSLKSLIAIANALEITPD 64 >gi|77463742|ref|YP_353246.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77388160|gb|ABA79345.1| Predicted transcriptional regulators [Rhodobacter sphaeroides 2.4.1] Length = 428 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 11/98 (11%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ G R+R RR+ LG+ Q L GI+ + E R+G L ++ L+ Sbjct: 2 PMTALTGSRVRERRLQLGLRQADLARAAGISASYLNLIEHNRRRIGDEVLARLARALKVE 61 Query: 70 ISFFFDVSP-----------TVCSDISSEENNVMDFIS 96 + D E + V DF+ Sbjct: 62 AQTLLAGAEGVLVEDLRAAAASAGDDQPELDRVEDFVG 99 >gi|29375989|ref|NP_815143.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29343451|gb|AAO81213.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 107 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 6/89 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G R+ R ++Q + LG+ YE+G I++ + + Sbjct: 3 GTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYLHG 62 Query: 74 ---FDVSPTVCSDISSEENNVMDFISTPD 99 F+ + ++ + + D +S + Sbjct: 63 RESFEDTSLSKKQLTVAAH-IDDNVSDTE 90 >gi|157833618|pdb|1R63|A Chain A, Structural Role Of A Buried Salt Bridge In The 434 Repressor Dna-Binding Domain, Nmr, 20 Structures Length = 63 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 60 Query: 75 DV 76 + Sbjct: 61 NG 62 >gi|319946276|ref|ZP_08020516.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747658|gb|EFV99911.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 158 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVS 56 >gi|317407356|gb|EFV87322.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 63 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R G SQ L E L ++ Q V E G I+ V PI F Sbjct: 3 NRIRDLRAERGWSQAALAEQLNVSRQTVNAIETGRYDPSLPLAFAIARVFGQPIEAIF 60 >gi|295108159|emb|CBL22112.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 110 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G RI MSQ +L + GIT + +Y KG + L +I+ L + F Sbjct: 4 NLGGRIAELLTQYNMSQRELADKAGITEVSMSRYIKGDRVPKGTTLANIATALHTTTDFL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + D SE + I+ R Q+ + R+ II L+ S Sbjct: 64 LNGEGSGTGDFESEYYQIHRLIA--------RNASQMSPKQRRELIIALLES 107 >gi|269102614|ref|ZP_06155311.1| putative cI prophage repressor protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162512|gb|EEZ41008.1| putative cI prophage repressor protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 220 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VG R++ R G+SQ+ L + G +V YE G+ + +++ L Sbjct: 7 VGLRLKQFRAKRGISQKDLADLCGWGASRVSNYESGIRSISLDDADTLAKHLGI 60 >gi|237748842|ref|ZP_04579322.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229380204|gb|EEO30295.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 99 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 6/96 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS- 71 +++G I+ R+ G SQ KL E + + E + S LQ I L PI Sbjct: 1 MDIGNAIKTCRIRRGYSQTKLAELAECSVSYLSLIEHNQRDITLSTLQKICHALHVPIGI 60 Query: 72 -FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F S ++S E ++ L L Sbjct: 61 LLFLGTSHDEFGEMSKE----LEAELAKSTLVLLSA 92 >gi|218259484|ref|ZP_03475207.1| hypothetical protein PRABACTJOHN_00865 [Parabacteroides johnsonii DSM 18315] gi|218225077|gb|EEC97727.1| hypothetical protein PRABACTJOHN_00865 [Parabacteroides johnsonii DSM 18315] Length = 196 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 7/82 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 ++GN KI +G +I+ R +S +++ E G++ +Q+++ E ++ + L Sbjct: 2 LMGNNKI-------IGAKIKSIRESKQLSTQEVSERSGLSIEQIERIEGNIDFPSLAPLI 54 Query: 61 HISEVLESPISFFFDVSPTVCS 82 I+ VL + F D + Sbjct: 55 KIARVLGVRLGTFLDDQSELGP 76 >gi|152965999|ref|YP_001361783.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151360516|gb|ABS03519.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 96 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R LGM+Q +L + + +T Q V E G I+ L + F Sbjct: 20 NRVRTTRTALGMTQAELADAVEVTRQTVVAVEAGNYAPSVYLALAIAHRLGRSVEELFGP 79 Query: 77 SPTVCSDISSEENNV 91 + S V Sbjct: 80 AGAPSRPDSHPATEV 94 >gi|150376587|ref|YP_001313183.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031134|gb|ABR63250.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 193 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ + +L G++ + K E+G L I+ V + FF Sbjct: 15 IGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHFF 74 Query: 75 DVSPTV 80 +V Sbjct: 75 NVDKEE 80 >gi|78187660|ref|YP_375703.1| hypothetical protein Plut_1806 [Chlorobium luteolum DSM 273] gi|78167562|gb|ABB24660.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 370 Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R R + SQ++L E G++ ++ E + S LQ I+ L+ P+ FF Sbjct: 6 LSANVRRLRSMKRFSQKELAEAAGMSLPAIKNLELQKSEPRMSSLQAIARALDVPLQDFF 65 >gi|333025545|ref|ZP_08453609.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332745397|gb|EGJ75838.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 209 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D V KR+R R+ G S E+L ++ + + E G R+ L ++ L++ Sbjct: 6 DDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDT 65 Query: 69 PISFFFDVSPT 79 + + + Sbjct: 66 SLDQLVETASD 76 >gi|310659824|ref|YP_003937545.1| hypothetical protein CLOST_2525 [Clostridium sticklandii DSM 519] gi|308826602|emb|CBH22640.1| protein of unknown function [Clostridium sticklandii] Length = 102 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R I ++Q +L E + + + E+ L+ I+E S+ Sbjct: 1 MTIGERIRQLRRIKDVTQRELAESVNFSHSYIGDLERNRTNPSIKALEIIAEYFNVDTSY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|294495678|ref|YP_003542171.1| transcriptional regulator [Methanohalophilus mahii DSM 5219] gi|292666677|gb|ADE36526.1| transcriptional regulator [Methanohalophilus mahii DSM 5219] Length = 183 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R++ R + G+S E++ L I+ ++ KYE G + AS L I+++L+ ++ Sbjct: 6 KEISSRVKELRGLSGISTEEIASNLDISLEEYNKYESGELDIPASILFEIAQLLKVDMTV 65 Query: 73 FFDVSPT 79 Sbjct: 66 LLTGEDP 72 >gi|293401684|ref|ZP_06645826.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304942|gb|EFE46189.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 201 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R L SQ+ E LGI + YE N L +I++ + + Sbjct: 7 LGDKLQYLRKTLTFSQKDFAEFLGIPQPSLSAYENNRNSPTVDVLINIAKKCNISLDWL- 65 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + S +V DF+ Sbjct: 66 -CGISTSKQTLSSLGDVSDFL 85 >gi|257455791|ref|ZP_05621017.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257446805|gb|EEV21822.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N + I G++IR R +SQE+L E G + E+G ++ + Sbjct: 1 MENDILIKFGQKIRQLRKAKNLSQEQLAELTGFHRNYIGMVERGERNPALVNIEIFANAF 60 Query: 67 ESPISFFFD 75 + +S FD Sbjct: 61 DLSLSELFD 69 >gi|168188074|ref|ZP_02622709.1| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169294075|gb|EDS76208.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 184 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK ++ R MS + + + G++ + + E+G + S L I+ L+ S F Sbjct: 8 IGKNLKTIRNKKNMSLDNVCKLTGVSKAMLGQIERGESNPTVSTLWRIATGLKISFSSFI 67 Query: 75 DVSPTV 80 D S Sbjct: 68 DESKET 73 >gi|197122398|ref|YP_002134349.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917180|ref|YP_002492484.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172247|gb|ACG73220.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219955034|gb|ACL65418.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 81 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+R+R R GM+QE L E L ++ V E+G + + I+ L P Sbjct: 17 RRLGERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARALGIP 73 >gi|306521451|ref|ZP_07407798.1| putative phage DNA-binding protein [Clostridium difficile QCD-32g58] Length = 166 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R ++Q +L E GI+ + YE L +++ L+ + Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEKTI 60 Query: 73 F-FDVSPTVCSD 83 F FD+ V ++ Sbjct: 61 FYFDIENEVMTN 72 >gi|38233250|ref|NP_939017.1| putative DNA-binding protein [Corynebacterium diphtheriae NCTC 13129] gi|38199509|emb|CAE49160.1| Putative DNA-binding protein [Corynebacterium diphtheriae] Length = 193 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 6/78 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN------RVGASRLQHISEVLESP 69 G R+ R + G++Q+ L E ++ Q+ E+ N S + ++ L P Sbjct: 26 GVRLHKLRRLRGLTQDGLAEIANLSRNQISNLERNENSATKSSDPTMSTIYRLARALHVP 85 Query: 70 ISFFFDVSPTVCSDISSE 87 + +DI + Sbjct: 86 PAALMPAVGDYVTDICQD 103 >gi|28377505|ref|NP_784397.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] gi|28270337|emb|CAD63238.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] Length = 120 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 17 KRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R++ R G++QE+L LG+ + YE+G + L I++ + Sbjct: 4 ERLKELRKREAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDYLLG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDG 100 + T + ++ DF+ +G Sbjct: 64 KNGTPKWATKKDTIDLKDFLEANEG 88 >gi|56808631|ref|ZP_00366358.1| COG1396: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] Length = 195 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R +SQE+L E + ++ Q + +E L +S++ + ++ Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLN 59 >gi|323485634|ref|ZP_08090973.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323401045|gb|EGA93404.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 289 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R ++QE+ E + ++ Q V K+E G + +L I E + Sbjct: 5 ENLQYLRKKQNLTQEQFAEQMEVSRQAVSKWESGQSYPEMEKLLQICEQFGCSMDSLIKG 64 Query: 77 SPTVCS 82 T + Sbjct: 65 DVTEAA 70 >gi|295102573|emb|CBL00118.1| Predicted transcriptional regulator [Faecalibacterium prausnitzii L2-6] Length = 138 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFFFD 75 +R++ +R ++Q +L E G+T + +Q YE G + +Q I++ L + + Sbjct: 5 ERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTMQKIADALNTTTEYLLG 64 Query: 76 VSPTVCSDI 84 S T + Sbjct: 65 SSGTYVVEA 73 >gi|227878081|ref|ZP_03996068.1| possible transcriptional regulator [Lactobacillus crispatus JV-V01] gi|227862319|gb|EEJ69851.1| possible transcriptional regulator [Lactobacillus crispatus JV-V01] Length = 196 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 13/112 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R LG++Q+++ + IT K EKG NR+ L I + +S+ Sbjct: 1 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI---QIDDVKVRQKIIE 121 F D + + S +E N + LN F +I +++++I Sbjct: 61 FVDHY--LNDENSEKEVNYSEI--------LNIAFYEKDKIAAEEIKRQIFS 102 >gi|222142571|ref|YP_002559327.1| hypothetical protein MCCL_plsA0010 [Macrococcus caseolyticus JCSC5402] gi|222121340|dbj|BAH18674.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 280 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I+ +R + M+Q +L + T Q+ K EKG + L I++ L+ + Sbjct: 2 LNIGEFIKNKRNEMNMTQIQLSNGI-CTQGQISKIEKGEIDPSSEILVKIAQKLDFSLDD 60 Query: 73 FFDVSP 78 F+++ Sbjct: 61 LFNLTS 66 >gi|163940975|ref|YP_001645859.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863172|gb|ABY44231.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 242 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I++ K I +R G++QE+L +GIT V K+E G + + + ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFVPLLASYFNISID 62 >gi|328882934|emb|CCA56173.1| hypothetical protein SVEN_2887 [Streptomyces venezuelae ATCC 10712] Length = 62 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R RM ++Q+++GE G+ +Q+ E G + +++ + P F+ Sbjct: 3 GARVRDARMYANLTQQRVGELSGLARATIQEIESGRAAPTVDTVLLLADAIGVPPGVLFE 62 >gi|306825347|ref|ZP_07458687.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432285|gb|EFM35261.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 158 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R ++Q + + +GI+ + +YE G++ V + I + Sbjct: 2 IGENIKALRKTHNLTQPEFAKIVGISRNSLSRYENGISSVSTELIDRICKKFNVS 56 >gi|253730501|ref|ZP_04864666.1| transcription regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725750|gb|EES94479.1| transcription regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 391 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|239834287|ref|ZP_04682615.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] gi|239822350|gb|EEQ93919.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] Length = 264 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + R++ R+ MSQ +L + +G + E G + +++ L Sbjct: 36 MDKDFAFRLKNARVARDMSQAQLADLVGRDKSAISLLESGKRGASVDFVARLAKALNVRE 95 Query: 71 SFF-FDVSPTVCSDISSEENNVMDFISTP 98 + F+ + + +E D + Sbjct: 96 DWLAFEKGDMIGQEERAELERPADIFTPK 124 >gi|228478091|ref|ZP_04062702.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] gi|228250271|gb|EEK09524.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] Length = 169 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFIS 96 F S + + S E N D +S Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS 90 >gi|254510314|ref|ZP_05122381.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacteraceae bacterium KLH11] gi|221534025|gb|EEE37013.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacteraceae bacterium KLH11] Length = 211 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S E + G++ V + E+G + S L +++ L+ + D Sbjct: 38 ARLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLLDG 97 Query: 77 SPT 79 + T Sbjct: 98 AKT 100 >gi|254416780|ref|ZP_05030530.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC 7420] gi|254417544|ref|ZP_05031282.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC 7420] gi|196175642|gb|EDX70668.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC 7420] gi|196176520|gb|EDX71534.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC 7420] Length = 77 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG--VNRVGASRLQHISEVLESPISFF 73 G ++ R LG++Q+++ + +G+T Q V +E G R+ + Q + +L+ P+ Sbjct: 4 GHKLMKLRKRLGLTQKQVADAVGVTDQTVSNWEAGRFEPRLTIRQTQALCSILQCPLDEL 63 Query: 74 FDVSPTVCSD 83 + SD Sbjct: 64 PSFNEAQESD 73 >gi|166032930|ref|ZP_02235759.1| hypothetical protein DORFOR_02651 [Dorea formicigenerans ATCC 27755] gi|167766611|ref|ZP_02438664.1| hypothetical protein CLOSS21_01117 [Clostridium sp. SS2/1] gi|218132240|ref|ZP_03461044.1| hypothetical protein BACPEC_00097 [Bacteroides pectinophilus ATCC 43243] gi|225026928|ref|ZP_03716120.1| hypothetical protein EUBHAL_01184 [Eubacterium hallii DSM 3353] gi|323487598|ref|ZP_08092888.1| hypothetical protein HMPREF9474_04639 [Clostridium symbiosum WAL-14163] gi|166027287|gb|EDR46044.1| hypothetical protein DORFOR_02651 [Dorea formicigenerans ATCC 27755] gi|167711734|gb|EDS22313.1| hypothetical protein CLOSS21_01117 [Clostridium sp. SS2/1] gi|217992849|gb|EEC58849.1| hypothetical protein BACPEC_00097 [Bacteroides pectinophilus ATCC 43243] gi|224955739|gb|EEG36948.1| hypothetical protein EUBHAL_01184 [Eubacterium hallii DSM 3353] gi|291526845|emb|CBK92431.1| Helix-turn-helix [Eubacterium rectale M104/1] gi|291535072|emb|CBL08184.1| Helix-turn-helix [Roseburia intestinalis M50/1] gi|291558633|emb|CBL37433.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|323399097|gb|EGA91505.1| hypothetical protein HMPREF9474_04639 [Clostridium symbiosum WAL-14163] Length = 209 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLRGETDEYETDITDKKE 85 >gi|118476856|ref|YP_894007.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118416081|gb|ABK84500.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 114 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 9 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 68 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 69 LHDETTKEANLDSE 82 >gi|9635004|ref|NP_056720.1| putative DNA binding protein [Streptococcus phage Sfi11] gi|7523564|gb|AAF63067.1|AF158600_21 putative DNA binding protein [Streptococcus phage Sfi11] Length = 167 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 33/74 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ L R +++ +L E +G++ V K E G +++ + +++ + + + Sbjct: 2 NRLYLLRESRKITRVELAEKIGVSKLTVLKLEHGTSKISRREAKKLADFFGVSVGYLLGL 61 Query: 77 SPTVCSDISSEENN 90 T + ++ N Sbjct: 62 DTTENDSLIAKINE 75 >gi|57641201|ref|YP_183679.1| transcription regulator [Thermococcus kodakarensis KOD1] gi|57159525|dbj|BAD85455.1| predicted transcription regulator, containing CBS domains [Thermococcus kodakarensis KOD1] Length = 192 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IP P+D + IR R LG++QE+L + G+T + K E G S L I + L Sbjct: 4 IPRPIDP---REIRKIRKELGITQEELAKKAGVTQAYIAKLEAGKVDPRLSTLNRILQAL 60 >gi|322390777|ref|ZP_08064288.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142532|gb|EFX37999.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 169 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFIS 96 F S + + S E N D +S Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS 90 >gi|319442546|ref|ZP_07991702.1| putative regulatory protein [Corynebacterium variabile DSM 44702] Length = 104 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R+ R MS+ +L E +G+ Q V E+G + I E+ P+ F Sbjct: 11 NRVRVLRAERDMSRAQLAELIGVNPQTVGALERGDHSPSLDLAFRICEIFSLPVEAVFSR 70 Query: 77 SP 78 +P Sbjct: 71 TP 72 >gi|296330703|ref|ZP_06873180.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673960|ref|YP_003865632.1| Phage PBSZ transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152167|gb|EFG93039.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412204|gb|ADM37323.1| Phage PBSZ transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 113 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 16/120 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 2 IGSRLKSLRGKR--TQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLL 59 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEKK 132 D D S P L + + D + +Q+ IE + + EK Sbjct: 60 TGKDKKSDD---------DMFSDP---DLQVAYRDMQDFSPESKQQAIEFINYLKEKEKN 107 >gi|291548979|emb|CBL25241.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] gi|295110025|emb|CBL23978.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 67 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ G++QE+L E +G+ + + + EK IS VL +PI F Sbjct: 8 NLKVYRVAQGLTQEQLAEKVGVRRETIMRLEKAQYNPSLKLAIDISRVLNAPIEDIF 64 >gi|326204926|ref|ZP_08194779.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984975|gb|EGD45818.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 110 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 11/97 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R SQE L E L T Q + YE+G+ L +++ + + D Sbjct: 6 NLKKLRKQYKYSQEYLAEKLKTTQQNISLYERGLVAPNIETLTQLADCFRVSVDYLIDYK 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + + L + F ++ K Sbjct: 66 KDPNHTGL-----------SQEAIDLLKIFDELPHNK 91 >gi|229828089|ref|ZP_04454158.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] gi|229792683|gb|EEP28797.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] Length = 327 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 +I R G SQE+L E L ++ Q V K+E + +++ +SEV + + Sbjct: 6 KIIDLRKKNGWSQEELAEKLDVSRQSVSKWEGARSVPDMNKILRLSEVFAVSTDYLLKDE 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 +S +++ + + +S + + Sbjct: 66 ISAPEGTNVPVDTESEAVRVSMEEAVD 92 >gi|256419075|ref|YP_003119728.1| helix-turn-helix domain protein [Chitinophaga pinensis DSM 2588] gi|256033983|gb|ACU57527.1| helix-turn-helix domain protein [Chitinophaga pinensis DSM 2588] Length = 347 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+R++ R I G S + L IT Q + KYE V L +S L Sbjct: 3 YFGERLKAARKIKGWSLQDLANQTANSITKQALSKYEADVMHPSRKILLLLSAALGVKPG 62 Query: 72 FFFDVSPT 79 +F + P Sbjct: 63 YF-EGQPA 69 >gi|163938083|ref|YP_001642967.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229165063|ref|ZP_04292859.1| Transcriptional regulator Xre [Bacillus cereus AH621] gi|163860280|gb|ABY41339.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228618448|gb|EEK75477.1| Transcriptional regulator Xre [Bacillus cereus AH621] Length = 67 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKTLNVSID 62 >gi|94499248|ref|ZP_01305786.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] gi|94428880|gb|EAT13852.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] Length = 182 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG R++ R G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGTRLKEVRKKSGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLK---KVLGGIPLS 57 Query: 72 F--FFDVSPTVCSDIS 85 FF+ T + Sbjct: 58 LTEFFETEDTSQTATP 73 >gi|317499839|ref|ZP_07958077.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316898741|gb|EFV20774.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 102 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R+ G+SQ+++ E +G+ YE G + ++ I++VL + Sbjct: 7 ENLKEARIKSGLSQKEVSENIGVAKSTYSLYESGNREPNVNTIKKIADVLNVSADTLLGI 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + + + T D L R F Sbjct: 67 DEEPTTMAAHFDGDEY----TEDELDEIRQFA 94 >gi|298693412|gb|ADI96634.1| Putative transcription regulator [Staphylococcus aureus subsp. aureus ED133] gi|323440125|gb|EGA97839.1| transcriptional regulator [Staphylococcus aureus O11] Length = 391 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|170692962|ref|ZP_02884123.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170141960|gb|EDT10127.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 190 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 8/136 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV N + VG +IR R L + + GI+ + + E+G+ + L Sbjct: 1 MVTTIHKSNSA-LEVGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLA 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+ L + +F D S ++ F + F ++ +V +++ Sbjct: 60 GIAHALGVTVQYFVDTPSEERSVSRGDQLKFFGFADS------ANLFARLTNVTGGRQLE 113 Query: 121 E-LVRSIVSSEKKYRT 135 LV+ V ++ T Sbjct: 114 AILVKMPVGQKRSEVT 129 >gi|167820072|ref|ZP_02451752.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 91] Length = 113 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 28 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIA 83 >gi|145221479|ref|YP_001132157.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213965|gb|ABP43369.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] Length = 83 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG +IR R+ M+QE L G+T + E G + RL I++ L+ ++ Sbjct: 21 RLVGAKIRELRIARDMTQEALALRSGVTRNVLIDVEHGRRGLLYERLFDIADALDVNVA 79 >gi|117164576|emb|CAJ88122.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 200 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D V KRIR R+ G S E+L ++ + + E G R+ +L I+ L++ Sbjct: 9 DDLDGLVRKRIRALRVAQGWSLEELATRARLSQSSLSRIENGQRRLALDQLVTIARALDT 68 Query: 69 PISFFFDVS 77 + + + Sbjct: 69 TLDQLVETA 77 >gi|92118817|ref|YP_578546.1| hypothetical protein Nham_3355 [Nitrobacter hamburgensis X14] gi|91801711|gb|ABE64086.1| protein of unknown function DUF955 [Nitrobacter hamburgensis X14] Length = 354 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ L RM + L E G+ + + E G N + ++ +S+ L P++FF D Sbjct: 5 RRLSLARMRRRKTARALAEETGLAADTISRLEAGSNAPDETTIEKLSKALGFPVAFFMDA 64 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 P D + +S + Sbjct: 65 DPEDI-DTGAVSFRSFSKMSARE 86 >gi|89895561|ref|YP_519048.1| hypothetical protein DSY2815 [Desulfitobacterium hafniense Y51] gi|89335009|dbj|BAE84604.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 91 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVL 66 D + G IR R GM+QE+L L I+ + K E G+ + LQ I +L Sbjct: 22 DKSFGDNIRKWRNAKGMTQEELSTQLQIHGCDISRGTLAKIEAGIRHISVDELQAIKIIL 81 Query: 67 ESPISFFF 74 E FF Sbjct: 82 EITYEDFF 89 >gi|126462571|ref|YP_001043685.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|332558597|ref|ZP_08412919.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides WS8N] gi|126104235|gb|ABN76913.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC 17029] gi|332276309|gb|EGJ21624.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 428 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P+ G R+R RR+ LG+ Q L GI+ + E R+G L ++ L+ Sbjct: 2 PMTALTGSRVRERRLQLGLRQADLARAAGISASYLNLIEHNRRRIGDEVLARLARALKV 60 >gi|69245018|ref|ZP_00603176.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257879285|ref|ZP_05658938.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881898|ref|ZP_05661551.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890113|ref|ZP_05669766.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615689|ref|ZP_05713459.1| hypothetical protein EfaeD_08257 [Enterococcus faecium DO] gi|260558729|ref|ZP_05830918.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|293563230|ref|ZP_06677683.1| transcriptional regulator, putative [Enterococcus faecium E1162] gi|294622366|ref|ZP_06701395.1| transcriptional regulator, putative [Enterococcus faecium U0317] gi|314937319|ref|ZP_07844659.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314943378|ref|ZP_07850149.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314949074|ref|ZP_07852436.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|314953479|ref|ZP_07856395.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994167|ref|ZP_07859474.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995977|ref|ZP_07861057.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|68196019|gb|EAN10451.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257813513|gb|EEV42271.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817556|gb|EEV44884.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826473|gb|EEV53099.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260075188|gb|EEW63501.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291598126|gb|EFF29229.1| transcriptional regulator, putative [Enterococcus faecium U0317] gi|291604825|gb|EFF34306.1| transcriptional regulator, putative [Enterococcus faecium E1162] gi|313589853|gb|EFR68698.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591434|gb|EFR70279.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594512|gb|EFR73357.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597922|gb|EFR76767.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313643270|gb|EFS07850.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313644551|gb|EFS09131.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 270 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 +D VG RIR R L +S EK G+ +G + V +E+G+N L I+E+ Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEI 59 >gi|326772673|ref|ZP_08231957.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] gi|326637305|gb|EGE38207.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] Length = 65 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q +LG LG++ Q + EKG I+ E+ + F Sbjct: 8 VRSLREACGLTQAQLGVALGVSRQSINSIEKGKYDPSLPLAIAIARYFETTVEEIF 63 >gi|316941295|gb|ADU75329.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 374 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ + I R G++QE + +G++ V K+E G + + L ++ + I Sbjct: 4 INIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LMGYEPQMSKE 74 >gi|291539287|emb|CBL12398.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 209 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLRGETDEYETDITDKKE 85 >gi|289643382|ref|ZP_06475503.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289506780|gb|EFD27758.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 407 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFF 73 VG+R+ R G+SQ LG+ +G + V + E+G V S L +++ L P+S Sbjct: 7 VGERLAFHRKRRGLSQVALGKLIGRSESWVSQVERGTRMVDRLSVLAQVADALNIPVS-- 64 Query: 74 FDVSPTVCSDISSEE 88 +++P V D E Sbjct: 65 -ELAPDVPQDALPAE 78 >gi|288870099|ref|ZP_06112925.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288868454|gb|EFD00753.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 67 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R G+SQE+L + G++ Q + E + H+++ L++ + F Sbjct: 9 IRSMRKQQGLSQEELAKKCGVSRQTINAIENNKYDPTLALAFHLAKELQTTVDNLF 64 >gi|283767889|ref|ZP_06340804.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283461768|gb|EFC08852.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] Length = 391 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|256004475|ref|ZP_05429455.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|255991616|gb|EEU01718.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] Length = 376 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ + I R G++QE + +G++ V K+E G + + L ++ + I Sbjct: 6 INIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDE 65 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 66 LMGYEPQMSKE 76 >gi|227513208|ref|ZP_03943257.1| hypothetical protein HMPREF0497_2330 [Lactobacillus buchneri ATCC 11577] gi|227083589|gb|EEI18901.1| hypothetical protein HMPREF0497_2330 [Lactobacillus buchneri ATCC 11577] Length = 104 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 10/99 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GK+++ R G++ +LG +G + + ++E + L + + L + I FF Sbjct: 7 GKKLKELRKAKGLTASELGSKMGYSQSYISRFETDRATPDINALGDMLKYLGTDIPSFFG 66 Query: 75 -DVSP---TVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++ P + + IS + ++ +L R F Sbjct: 67 DELEPKKRALLNAISHLSEEQIILLT-----ELLRSFNS 100 >gi|210614272|ref|ZP_03290143.1| hypothetical protein CLONEX_02356 [Clostridium nexile DSM 1787] gi|210150756|gb|EEA81765.1| hypothetical protein CLONEX_02356 [Clostridium nexile DSM 1787] Length = 209 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLRGETDEYETDITDKKE 85 >gi|281418200|ref|ZP_06249220.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|281409602|gb|EFB39860.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] Length = 376 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ + I R G++QE + +G++ V K+E G + + L ++ + I Sbjct: 6 INIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDE 65 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 66 LMGYEPQMSKE 76 >gi|111225661|ref|YP_716455.1| hypothetical protein FRAAL6319 [Frankia alni ACN14a] gi|111153193|emb|CAJ64942.1| hypothetical protein FRAAL6319 [Frankia alni ACN14a] Length = 409 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 15/119 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G R+ R ++Q +L E G++ V K E G + V S L ++ L P + F Sbjct: 12 LGSRVAQVRRRRSLTQAELAEAAGVSVDLVCKLEAGSKDGVRLSSLHALARALAVPTATF 71 Query: 74 FDVSPTVCSDISSEENNVMDFI-------STPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + D + + S +G L +R +++ + R+ Sbjct: 72 LEAREGPVMDAGDLAVLPLRRMLVPGPAASRAEGPSLLLA-------SLRGRVLAVTRA 123 >gi|67078395|ref|YP_246012.1| transcriptional regulator [Bacillus cereus E33L] gi|66970701|gb|AAY60673.1| conserved hypothetical protein [Bacillus cereus E33L] Length = 186 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R MSQE+L E + ++ Q + +E N L +S + + + Sbjct: 1 MNIGRQIQYFRKRDNMSQEELAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNASLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|125974048|ref|YP_001037958.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714273|gb|ABN52765.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 374 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ + I R G++QE + +G++ V K+E G + + L ++ + I Sbjct: 4 INIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LMGYEPQMSKE 74 >gi|322388761|ref|ZP_08062358.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140380|gb|EFX35888.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 169 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFIS 96 F S + + S E N D +S Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS 90 >gi|307704468|ref|ZP_07641378.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307706023|ref|ZP_07642846.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|322376999|ref|ZP_08051492.1| putative transcriptional repressor [Streptococcus sp. M334] gi|307620442|gb|EFN99555.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307621988|gb|EFO01015.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|321282806|gb|EFX59813.1| putative transcriptional repressor [Streptococcus sp. M334] Length = 69 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ L ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|262282190|ref|ZP_06059959.1| transcription regulator [Streptococcus sp. 2_1_36FAA] gi|262262644|gb|EEY81341.1| transcription regulator [Streptococcus sp. 2_1_36FAA] Length = 71 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E ++++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALFWD 61 Query: 77 SPTVCSD 83 D Sbjct: 62 PQLTDED 68 >gi|228943003|ref|ZP_04105508.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975941|ref|ZP_04136462.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977442|ref|ZP_04137836.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228782266|gb|EEM30450.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228783777|gb|EEM31835.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816667|gb|EEM62787.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938467|gb|AEA14363.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 66 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q+KL E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|224368187|ref|YP_002602350.1| transcriptional regulator (XRE family protein) [Desulfobacterium autotrophicum HRM2] gi|223690903|gb|ACN14186.1| transcriptional regulator (XRE family protein) [Desulfobacterium autotrophicum HRM2] Length = 182 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK P +++G+ I+ R+ + + L G++ ++K E G R L Sbjct: 1 MAKKKTPL---VHIGETIKKVRLEKSVDLDFLANETGLSIDFLKKVESGEQRPSVGSLLQ 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 IS L +F + + D Sbjct: 58 ISRALGIDSGYFLKDQASNAEKRAEAYTKRTD 89 >gi|218248605|ref|YP_002373976.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061671|ref|YP_003139559.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169083|gb|ACK67820.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] gi|256591837|gb|ACV02724.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 72 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R +LG+SQ+ L E G+ + E+G V + +++ LE + F+ Sbjct: 9 GMRVRYFRKLLGISQDDLAEKAGMHRTYIGAIERGERNVSLLNILRLADALEIKVKELFN 68 Query: 76 VSPT 79 V Sbjct: 69 VDID 72 >gi|86157299|ref|YP_464084.1| transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773810|gb|ABC80647.1| transcriptional regulator, XRE family with cupin sensor domain protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 192 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R +S EKL + G++ + + E G + + L IS L P S Sbjct: 12 VGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALGVPFSALI 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + E+ +S+ DG +R D+ + R + EL Sbjct: 72 TARSSGGLHVLRAEH--AKVLSSHDGSYSSRALFPFDEPR-RVEFYEL 116 >gi|30261384|ref|NP_843761.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47526558|ref|YP_017907.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49184213|ref|YP_027465.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49479785|ref|YP_035509.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144053|ref|YP_082775.1| transcriptional regulator [Bacillus cereus E33L] gi|65318649|ref|ZP_00391608.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870458|ref|ZP_02215113.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167634445|ref|ZP_02392766.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|167639233|ref|ZP_02397505.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|170686721|ref|ZP_02877941.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|170706389|ref|ZP_02896850.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|177651426|ref|ZP_02934215.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190568774|ref|ZP_03021678.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196040706|ref|ZP_03108005.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|196046437|ref|ZP_03113662.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|218902488|ref|YP_002450322.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225863243|ref|YP_002748621.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227815879|ref|YP_002815888.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228913951|ref|ZP_04077575.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926412|ref|ZP_04089484.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932662|ref|ZP_04095536.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944980|ref|ZP_04107341.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090334|ref|ZP_04221578.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|229120921|ref|ZP_04250163.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|229183574|ref|ZP_04310798.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|229600133|ref|YP_002865801.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] gi|254682559|ref|ZP_05146420.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254726220|ref|ZP_05188002.1| transcriptional regulator [Bacillus anthracis str. A1055] gi|254733977|ref|ZP_05191691.1| transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254740336|ref|ZP_05198027.1| transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254753723|ref|ZP_05205758.1| transcriptional regulator [Bacillus anthracis str. Vollum] gi|254758819|ref|ZP_05210846.1| transcriptional regulator [Bacillus anthracis str. Australia 94] gi|30255238|gb|AAP25247.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47501706|gb|AAT30382.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49178140|gb|AAT53516.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49331341|gb|AAT61987.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977522|gb|AAU19072.1| transcriptional regulator [Bacillus cereus E33L] gi|164713953|gb|EDR19475.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167512672|gb|EDR88046.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|167530333|gb|EDR93059.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|170128923|gb|EDS97789.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|170669244|gb|EDT19987.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|172082704|gb|EDT67767.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190560190|gb|EDV14171.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196022621|gb|EDX61303.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|196028496|gb|EDX67104.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|218539564|gb|ACK91962.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225790845|gb|ACO31062.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227003466|gb|ACP13209.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228599984|gb|EEK57580.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|228662581|gb|EEL18179.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|228693028|gb|EEL46745.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|228814649|gb|EEM60909.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826980|gb|EEM72740.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833236|gb|EEM78801.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845673|gb|EEM90700.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264541|gb|ACQ46178.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] Length = 107 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDETTKEANLDSE 75 >gi|327490523|gb|EGF22304.1| transcriptional regulator [Streptococcus sanguinis SK1058] Length = 71 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|331697390|ref|YP_004333629.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326952079|gb|AEA25776.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 190 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 28/88 (31%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R +S +L G++ + + E G L ++ L P + + Sbjct: 20 VRRERTRRDLSLGELARRAGLSKSTLSQLESGAGNPSVETLWALAVALGVPFARLVETPV 79 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRY 106 + S E+ + P L Sbjct: 80 QAVRVLRSGESAALTAERAPFSSALLAA 107 >gi|315143624|gb|EFT87640.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX2141] Length = 68 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---ISFF 73 R++ R+ G SQE+L + LG T K E G +G L I+ LE P IS F Sbjct: 6 NRLKAERIAKGYSQEELAKKLGWTRSMYTKRENGAVSLGVDELAKIATALEMPESRISIF 65 Query: 74 FD 75 F+ Sbjct: 66 FN 67 >gi|310766355|gb|ADP11305.1| hypothetical protein EJP617_16240 [Erwinia sp. Ejp617] gi|310766360|gb|ADP11310.1| hypothetical protein EJP617_16290 [Erwinia sp. Ejp617] gi|310768308|gb|ADP13258.1| hypothetical protein EJP617_35770 [Erwinia sp. Ejp617] Length = 129 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R+ R G+SQ+ + + +GI +KYE G + L+ I+ L F Sbjct: 11 MSLSERLFELRRQHGLSQQAMADAVGIHANSWKKYETGQAQPSIDILKKIATALHVSTDF 70 Query: 73 -FFDVSPTVCSD 83 FD V Sbjct: 71 LLFDAHERVPEG 82 >gi|307701893|ref|ZP_07638902.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] gi|307616708|gb|EFN95896.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] Length = 158 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQPEFAQIIGISRNSLSRYENGTSPVSTELIDIICQKFNVS 56 >gi|290769910|gb|ADD61680.1| putative protein [uncultured organism] Length = 209 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLKGETDEYETDITDKKE 85 >gi|283786292|ref|YP_003366157.1| phage repressor protein [Citrobacter rodentium ICC168] gi|282949746|emb|CBG89365.1| putative phage repressor protein [Citrobacter rodentium ICC168] Length = 231 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G RIR R+ GM L + +GI V + E G + L + L ++ Sbjct: 1 MNIGNRIRELRLARGMKISDLADAVGIDGANVSRVETGKQKSFTEQSLSKYANALGVDVA 60 Query: 72 FFFDVSPTVCSDISSEENNVM 92 F S + S ENN + Sbjct: 61 ELFTPSINETTVYKSSENNPV 81 >gi|312194132|ref|YP_004014193.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311225468|gb|ADP78323.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 419 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + +R R G+SQE+L G++ V+K E+G + L ++ L S Sbjct: 5 DRPISGNLRDLRRTAGLSQEELAGRTGLSVSTVRKVEQGGS-ARVETLHVLARALGVETS 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL 101 F +D +EE N ++ ++ L Sbjct: 64 ALFGSQAPKPAD--AEEENKLNLVAFRHAL 91 >gi|78061653|ref|YP_371561.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77969538|gb|ABB10917.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 185 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 26/140 (18%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I EVL P ++F+ +S Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEVLGVPTTYFYSLSK 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD----VKVRQKIIELVRSIV------- 127 + +++ PD + Y I D +R + L + Sbjct: 74 PRS----------VPWVTRPDERRTVYYAAGITDILVSPNMRSRFSILESHLAPGASSGE 123 Query: 128 -----SSEKKYRTIEEECMV 142 S E+ +E E V Sbjct: 124 RPVDDSDEQGGFVLEGELTV 143 >gi|47092425|ref|ZP_00230215.1| transcriptional regulator, putative [Listeria monocytogenes str. 4b H7858] gi|47019202|gb|EAL09945.1| transcriptional regulator, putative [Listeria monocytogenes str. 4b H7858] gi|328465412|gb|EGF36656.1| hypothetical protein LM1816_14852 [Listeria monocytogenes 1816] Length = 89 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Query: 19 IRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 IR +R LG Q+ + LG KYE G ++ A L ++++L+ IS FF + Sbjct: 10 IREKRESLGFPQKDMAIKLGFKNASTYFKYETGEYKIKAEMLPLLAKILKCNISNFFTKN 69 Query: 76 VSPTVCSDISSEEN 89 V+ T +D EE Sbjct: 70 VAKTEMTDDLLEEQ 83 >gi|327473031|gb|EGF18458.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK408] Length = 170 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDISSEENN 90 F S + + S E+N Sbjct: 67 FGTSKEIELEKSVLESN 83 >gi|325695196|gb|EGD37097.1| transcriptional regulator [Streptococcus sanguinis SK150] Length = 71 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|300857312|ref|YP_003782296.1| putative membrane-associated gene regulator [Clostridium ljungdahlii DSM 13528] gi|300437427|gb|ADK17194.1| putative membrane-associated gene regulator with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 344 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 11/91 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I +R ++Q++L E L ++ V K+E+G++ S + I + L+ Sbjct: 8 GKFIIKKRKENNLTQKELAEKLYVSESAVSKWERGISYPDISLILSICDALKIS------ 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++ + ++ ++L R Sbjct: 62 -----EHELITASEDLHQHEIERQAMKLKRA 87 >gi|323528510|ref|YP_004230662.1| Cupin 2 barrel domain-containing protein [Burkholderia sp. CCGE1001] gi|323385512|gb|ADX57602.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1001] Length = 190 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 10/117 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +IR R L + + GI+ + + E+G+ + L I+ L + + Sbjct: 12 LEVGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP----------DGLQLNRYFIQIDDVKVRQKI 119 F D S ++ F + G QL +++ + R ++ Sbjct: 72 FVDTPSEERSVSRGDQLKFFGFADSANLFARLTNVTGGRQLEAILVKMPPGQKRSEV 128 >gi|239906602|ref|YP_002953343.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239796468|dbj|BAH75457.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 186 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R GM+ + L E G+T V YE G + S L +++ + ++ Sbjct: 9 REIAMRLRGLREATGMTAQALAEATGVTAADVAAYETGNKEIPVSYLYEVAKACGADLTA 68 Query: 73 FFDVSPT 79 Sbjct: 69 LLTGDDA 75 >gi|238921831|ref|YP_002935345.1| hypothetical protein EUBELI_20064 [Eubacterium eligens ATCC 27750] gi|238873503|gb|ACR73211.1| Hypothetical protein EUBELI_20064 [Eubacterium eligens ATCC 27750] Length = 111 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 5/101 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G R++ RR + + Q + + LG++ + E G L I +L + Sbjct: 6 VNIGPRLKQRRKEMHIKQIDMAKQLGVSQAFLSNVEAGRINCSLPLLTDICCILNVTPDY 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + SS+ + + +T + +I D Sbjct: 66 LI-LGHMRGNKASSDLIDELKMCNTEE----LEAIKRIVDA 101 >gi|227500450|ref|ZP_03930512.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098] gi|227217513|gb|EEI82832.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098] Length = 492 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 +R +G++Q KL E GI + + E+ +LQ I EVL I F+ Sbjct: 16 KRKEMGLTQAKLAEMTGINRAMISRLEQADYTPSIDQLQAIGEVLHFEIVDLFEEEEKAE 75 Query: 82 SDISSEENNVMDFIST 97 + I ++ + T Sbjct: 76 NIIPIDKKYKIAVAGT 91 >gi|221639612|ref|YP_002525874.1| Helix-turn-helix domain-containing protein [Rhodobacter sphaeroides KD131] gi|221160393|gb|ACM01373.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides KD131] Length = 428 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P+ G R+R RR+ LG+ Q L GI+ + E R+G L ++ L+ Sbjct: 2 PMTALTGSRVRERRLQLGLRQADLARAAGISASYLNLIEHNRRRIGDEVLARLARALKV 60 >gi|187776895|ref|ZP_02993368.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] gi|187775554|gb|EDU39356.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] Length = 189 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ + Sbjct: 2 ID-DIGKKIKKLRTNKKLTLKELSERTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVNL 60 Query: 71 SFFFDVSP 78 ++FF Sbjct: 61 TYFFQAPK 68 >gi|146301944|ref|YP_001196535.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156362|gb|ABQ07216.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 129 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +I+ R + +QE + + LG+T K EKG + +L I+++LE + Sbjct: 7 SKIKSIRELKNYTQEYMADQLGVTQAGYSKIEKGKTILSYVKLVEIAKILEVSV 60 >gi|22537855|ref|NP_688706.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76787796|ref|YP_330325.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76798410|ref|ZP_00780651.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77405968|ref|ZP_00783047.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] gi|77409450|ref|ZP_00786144.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|22534750|gb|AAN00579.1|AE014269_23 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76562853|gb|ABA45437.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76586242|gb|EAO62759.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77171942|gb|EAO75117.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77175420|gb|EAO78210.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] Length = 197 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLD 59 >gi|15595732|ref|NP_249226.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099522|ref|ZP_01363440.1| hypothetical protein PaerPA_01000534 [Pseudomonas aeruginosa PACS2] gi|218889277|ref|YP_002438141.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254237245|ref|ZP_04930568.1| hypothetical protein PACG_03304 [Pseudomonas aeruginosa C3719] gi|254243628|ref|ZP_04936950.1| hypothetical protein PA2G_04453 [Pseudomonas aeruginosa 2192] gi|9946402|gb|AAG03924.1|AE004490_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126169176|gb|EAZ54687.1| hypothetical protein PACG_03304 [Pseudomonas aeruginosa C3719] gi|126197006|gb|EAZ61069.1| hypothetical protein PA2G_04453 [Pseudomonas aeruginosa 2192] gi|218769500|emb|CAW25260.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 184 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++ + L + + + V + E+G++R L IS+VL P ++FF Sbjct: 15 VRELRKRKGITLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVPATYFF 70 >gi|330817330|ref|YP_004361035.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327369723|gb|AEA61079.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 192 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LG+S + L E G+T + K E+G++ + ++ L + F Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLATALHVEVGQLFASD 64 Query: 78 PTVCS 82 + Sbjct: 65 EDEKA 69 >gi|312279272|gb|ADQ63929.1| Transcriptional regulator, xre family [Streptococcus thermophilus ND03] Length = 170 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFIS 96 F S + + S E N D +S Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS 90 >gi|302540835|ref|ZP_07293177.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302458453|gb|EFL21546.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 195 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 19/120 (15%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D ++ +R R G+S ++ G+ + + E G L + L+ P Sbjct: 17 PMD-SIAAVLRRERGRAGLSLTEVARRAGVAKSTLSQLESGNGNPSLETLWALCVTLDVP 75 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR-------YFIQIDDVKVRQKIIEL 122 S D + I +G+ L + R+ I L Sbjct: 76 PSRLLD-----------PPRPRVQVIRADEGVTLASAQADYQAAMLSASPPGARRDIYRL 124 >gi|229012522|ref|ZP_04169696.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048] gi|228748682|gb|EEL98533.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048] Length = 242 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISID 62 >gi|171778687|ref|ZP_02919783.1| hypothetical protein STRINF_00635 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282644|gb|EDT48068.1| hypothetical protein STRINF_00635 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 65 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG+SQ L + +GI Q V E ++E L + ++ F Sbjct: 2 NRVKEFRTNLGISQLTLAKQIGIARQTVNLIENNKYNPSLDLCIKLAEALGTDLNTLF 59 >gi|170748375|ref|YP_001754635.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654897|gb|ACB23952.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 208 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 14/113 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSI--- 82 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +E ++ S D L +D KVR II +++I Sbjct: 83 ------ERVLAAGDEEPFIEKTSRADTPILVS-----EDGKVRLAIIGWLKTI 124 >gi|170017111|ref|YP_001728030.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803968|gb|ACA82586.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 275 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 3/104 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFF 74 G+ IR R GMSQ KLG +G + V + E + + + L +F+ Sbjct: 6 GELIRKTRQKRGMSQAKLGALIG-SQSMVSRIENNQTDPSDQTVLMLCDALMITFEEYFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + S +S+ N + DG+ L++ ++ + + R + Sbjct: 65 SIFDKKQSKLSALANQLEIIDHNNDGVMLDKLYV-LTQSQSRSQ 107 >gi|126740655|ref|ZP_01756341.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126718170|gb|EBA14886.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 138 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L +GI + +E+ ++ A++L +S +L +S+ Sbjct: 23 GDRVAAAREAAGMTQAELSRRMGIKKSTLTGWEQDLSEPRANKLSTLSGLLNVSMSWLLT 82 Query: 76 VSPTVCSDISSEENNVMDFIST-PDGLQL 103 S+ + + + DF + + +L Sbjct: 83 GEGEGMSEPADQVIELSDFGAVLKELREL 111 >gi|86158292|ref|YP_465077.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774803|gb|ABC81640.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 81 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+R+R R GM+QE L E L ++ V E+G + + I+ L P Sbjct: 17 RRLGERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARALGIP 73 >gi|134298781|ref|YP_001112277.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051481|gb|ABO49452.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 115 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G R++ R +S+E+L + L +++ + KYE + I++ I + Sbjct: 1 MSFGNRLKSLREKNNISREELAKLLDLSYWAISKYENNERIPDHETINKIADYFIVTIDY 60 Query: 73 FF----DVSPTVCSDISSEENNVMDFIS 96 + SP+ S I E V + + Sbjct: 61 LLGRSDNPSPSPKSTIDEEWPGVANILR 88 >gi|77412137|ref|ZP_00788460.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] gi|77161797|gb|EAO72785.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] Length = 197 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLD 59 >gi|322386654|ref|ZP_08060279.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269327|gb|EFX52262.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFIS 96 F S + + S E N D +S Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS 90 >gi|320536515|ref|ZP_08036545.1| helix-turn-helix protein [Treponema phagedenis F0421] gi|320146641|gb|EFW38227.1| helix-turn-helix protein [Treponema phagedenis F0421] Length = 369 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 33/91 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R + + L LG+T V YEKG A ++E L PI FF+ Sbjct: 7 ARLTQARNWNNYTLDYLAGMLGVTKASVSLYEKGARNPDAFVQIRLAEALGFPIEFFYKP 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S + S N +L + F Sbjct: 67 SFDTSNARISYRKNSSTKKKEKQRAELLKQF 97 >gi|312863214|ref|ZP_07723452.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100750|gb|EFQ58955.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 158 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGENIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVS 56 >gi|307324371|ref|ZP_07603579.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890102|gb|EFN21080.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 203 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V KRIR R LG S + L ++ + + E G R+ +L I+ L + + Sbjct: 8 LDGLVRKRIRGLRSALGWSLDDLAARCYLSPSTLSRIETGHRRISLDQLSAIARALGTTL 67 Query: 71 SFFFDVS 77 + Sbjct: 68 DQLVESD 74 >gi|303229713|ref|ZP_07316499.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302515610|gb|EFL57566.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 127 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK--GVNRVGASRLQHISEVLESPIS 71 +G +I R +G+SQ +L + +GI+ + K E G++ V + I+ L S Sbjct: 28 LGHKISTLRTSMGISQRQLADVVGISRSYLSKLECGYGISGVSIEVVFKIAYCLNVSTS 86 >gi|261208781|ref|ZP_05923218.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565534|ref|ZP_06445981.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294614441|ref|ZP_06694357.1| helix-turn-helix domain protein [Enterococcus faecium E1636] gi|294617957|ref|ZP_06697562.1| helix-turn-helix domain protein [Enterococcus faecium E1679] gi|260077283|gb|EEW65003.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162616|gb|EFD10469.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291592749|gb|EFF24342.1| helix-turn-helix domain protein [Enterococcus faecium E1636] gi|291595766|gb|EFF27054.1| helix-turn-helix domain protein [Enterococcus faecium E1679] Length = 270 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEV 65 +D VG RIR R L +S EK G+ +G + V +E+G+N L I+E+ Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEI 59 >gi|259047873|ref|ZP_05738274.1| Xre family toxin-antitoxin system, antitoxin component [Granulicatella adiacens ATCC 49175] gi|259035550|gb|EEW36805.1| Xre family toxin-antitoxin system, antitoxin component [Granulicatella adiacens ATCC 49175] Length = 63 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 31/56 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R+ + ++Q+++ E LG+ Q + KYEK ++ + L +S + + + F Sbjct: 6 LKAARVNVNLTQKEVAEKLGVHQQTIAKYEKDSTKIPMNLLHQLSALYKVKLDHIF 61 >gi|229087060|ref|ZP_04219212.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] gi|228696253|gb|EEL49086.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] Length = 190 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 10/103 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ +R R +S E+L + G++ + K E+G + I++ L P S Sbjct: 15 QVGQLLRKIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLGVIWKITKGLSIPFSRL 74 Query: 74 FDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 V +V S E V + F T + G++++R Sbjct: 75 MVVGESVTISRSGEGFAVDEGQAWRLETMFRYTKETGMEMHRA 117 >gi|255692636|ref|ZP_05416311.1| DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260621612|gb|EEX44483.1| DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 191 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ E+L + G+ +Q+++ E ++ + L I+ VL + F Sbjct: 7 VGEKIKALREDKTITIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRLGTFL 66 Query: 75 DVSPTVCS 82 D V Sbjct: 67 DDQDEVGP 74 >gi|224540522|ref|ZP_03681061.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus DSM 14838] gi|224517863|gb|EEF86968.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus DSM 14838] Length = 105 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+ I+ R ++QE+LGE +G+ Q+ K E G + + S + + + Sbjct: 37 IGEAIKQAREARNLTQEQLGELMGVKRAQISKIESGKS-ISFSTIVRAFKAMGV 89 >gi|218510320|ref|ZP_03508198.1| transcriptional regulator [Rhizobium etli Brasil 5] Length = 206 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 2/104 (1%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K + + + G+ +R R G S ++L + G++ + + E G + S L I Sbjct: 12 EAKDAADEITVQTGQNLRRIRTRRGYSLDRLAKIAGVSRAMLGQIETGKSSPTLSILSKI 71 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + L P + ++ + I + +++ +G R Sbjct: 72 AVALGIPCAAL--IAERGETPIIAVPRAKSKILASSEGRFQTRA 113 >gi|212710302|ref|ZP_03318430.1| hypothetical protein PROVALCAL_01361 [Providencia alcalifaciens DSM 30120] gi|212687109|gb|EEB46637.1| hypothetical protein PROVALCAL_01361 [Providencia alcalifaciens DSM 30120] Length = 185 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N ++I +G+++RL R +S +L GI+ + K E G + L+ I+ L Sbjct: 1 MENKINIKIGQKVRLLRQARNLSLSELSHLSGISKAALSKLESGDSNPRIDTLESIAAAL 60 Query: 67 ESPISFFF----DVSPTVCSDISSEENNVMDF 94 P+S F + P + E + + F Sbjct: 61 RFPLSDLFTRQNESYPYLVKSTPLEGDYLEQF 92 >gi|212638621|ref|YP_002315141.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560101|gb|ACJ33156.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 115 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I+ G R++ R + + QE + + +G+ YE+G L I+ + + Sbjct: 9 ISFGDRLQELRNKMKLRQEDVAKKIGVGRTTYAMYEQGKREPDYETLLKIANFFGVSVDY 68 Query: 73 FFDVSPTVCSD 83 ++ Sbjct: 69 LLTGQDKTDNE 79 >gi|157377494|ref|YP_001476094.1| transcriptional regulator protein-like protein [Shewanella sediminis HAW-EB3] gi|157319868|gb|ABV38966.1| transcriptional regulator protein-like protein [Shewanella sediminis HAW-EB3] Length = 78 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L E L ++ Q + EKG ++ + E+ I FD Sbjct: 3 NRLKVLRAERNWTQADLAEKLDVSRQTINAIEKGKYDPSLPLAFKVARLFEASIETIFDD 62 Query: 77 SPTVCSDISS 86 V S+ SS Sbjct: 63 EVEVDSEPSS 72 >gi|146307658|ref|YP_001188123.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575859|gb|ABP85391.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 185 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 9/89 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R ++ +L E +G + + + E+G++R + L ISE L+ P ++F+++ Sbjct: 14 IHDLRKHKKVTLNELAERIGRSVGFLSQVERGLSRPTVADLTAISEALDVPTTYFYNLPK 73 Query: 79 TVCSDISSEENN---------VMDFISTP 98 D + + + D +++P Sbjct: 74 PKALDWVTRPDERRTLYLAGGITDIMASP 102 >gi|28557093|dbj|BAC57552.1| immunity repressor protein [Clostridium sordellii] Length = 133 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G + +++ + L T + +YE G + L +S+ I + F + Sbjct: 7 RLKELRKEKGYTLDQMAQDLNTTKVTLSRYENGTREPKSETLNQLSDYFNVSIDYLFGKT 66 Query: 78 PTVCSDISSE 87 E Sbjct: 67 DERNPKTKDE 76 >gi|67921508|ref|ZP_00515026.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501] gi|67856620|gb|EAM51861.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501] Length = 229 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R GM+Q + + + + + EKG R+ +S L ++ +S F Sbjct: 13 QLGERLQQARKQCGMTQAEAAKIIKVARTTIVAIEKGERRLKSSELIKLARAYGRNVSDF 72 Query: 74 FDVSPTVCS 82 +P S Sbjct: 73 VKETPVAES 81 >gi|268608968|ref|ZP_06142695.1| hypothetical protein RflaF_05659 [Ruminococcus flavefaciens FD-1] Length = 69 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I R L M+Q +L +G+T + +YE G + L+ +++ L + + Sbjct: 4 IYKYRTALHMTQTQLAALVGVTPNAITQYESGARKPNILMLKKLAKALNTTADALLE 60 >gi|251789127|ref|YP_003003848.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537748|gb|ACT06369.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 95 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+RL R+ G+ Q +LG G+ +V +YE+ V+ S + + VL+ P Sbjct: 2 IGKRLRLARVNAGLKQVELGCLAGLDEETASSRVSQYEREVSSPDFSLVCRFAAVLDVPE 61 Query: 71 SFFFDVSPTVCS 82 ++F+ V + + Sbjct: 62 AYFYAVDEDLAT 73 >gi|291301766|ref|YP_003513044.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570986|gb|ADD43951.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 80 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G+S+ +L E LG+ +Q + E+G I++ E + F Sbjct: 10 NRIAMLRAERGISRRQLAEALGVHYQTIGYLERGEYSPSLYLALRIAQYFEVEVEVVFST 69 Query: 77 SP 78 +P Sbjct: 70 AP 71 >gi|229189462|ref|ZP_04316479.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] gi|228594053|gb|EEK51855.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] Length = 107 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDETTRETNLDSE 75 >gi|221141579|ref|ZP_03566072.1| hypothetical protein SauraJ_08055 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302344735|ref|YP_003813104.1| hypothetical protein pSK1_p06 [Staphylococcus aureus] gi|281336089|gb|ADA62638.1| hypothetical protein SAP025A_019 [Staphylococcus epidermidis] gi|282166337|gb|ADA80353.1| hypothetical protein SAP109A_023 [Staphylococcus epidermidis] gi|282166672|gb|ADA80688.1| hypothetical protein SAP098A_019 [Staphylococcus aureus] gi|282166876|gb|ADA80892.1| hypothetical protein SAP100A_001 [Staphylococcus aureus] gi|300492209|gb|ADK23690.1| hypothetical protein [Staphylococcus aureus] gi|302751831|gb|ADL66008.1| putative XRE-family transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 203 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +I R ++QE L E +T + +Q+ E G V + L++IS L+ I+ F+ Sbjct: 4 SKIAKLRKDKSLTQENLAEKACVTVRTIQRIEAGE-EVSSETLKNISNALDVTINELFE 61 >gi|220930162|ref|YP_002507071.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000490|gb|ACL77091.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 108 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRIR R G+++E+ E L ++ V + E+G ++ L +IS+ L + + Sbjct: 4 KEIGKRIRDERESFGLTRERFAEMLELSTNFVGQIERGEKKMSLETLINISDCLHISLDY 63 Query: 73 FFDVSPT 79 +P Sbjct: 64 LIKGTPE 70 >gi|169349697|ref|ZP_02866635.1| hypothetical protein CLOSPI_00435 [Clostridium spiroforme DSM 1552] gi|169293772|gb|EDS75905.1| hypothetical protein CLOSPI_00435 [Clostridium spiroforme DSM 1552] Length = 341 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ RR+ LG +QE+LG L ++ V ++EKG + L ++ +L++ ++ Sbjct: 7 IKERRLELGYTQEQLGALLNLSSSAVNRWEKGNCYPDITILPILARILKTDLN 59 >gi|251798465|ref|YP_003013196.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546091|gb|ACT03110.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 112 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + N+G+ IR R G SQE+L I + + E+G L I+ L+ Sbjct: 2 NEISRNIGENIRAIRKQKGFSQEQLALRAEINGSYMGQVERGEKSPTVDVLSKIAHALQC 61 Query: 69 PISFF--FDVSPTVCSDISSEENNVMDFISTPD 99 P+ +P S + + + + +S + Sbjct: 62 PLEQLVHMPGTPHEDSTYAEKIASQLQGLSVKE 94 >gi|167751804|ref|ZP_02423931.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] gi|167660045|gb|EDS04175.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] Length = 224 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +G++QE+L + LGI + E G + + + + L + Sbjct: 3 GDRLKLLRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDWL-- 60 Query: 76 VSPTVCSDISSEENNVMDFI-STPDGLQL 103 + ++ + E ++ ++ T + L L Sbjct: 61 --DSGEGEMFNAEPDLTAYMHRTDNTLPL 87 >gi|77408023|ref|ZP_00784772.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413855|ref|ZP_00790033.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160095|gb|EAO71228.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173385|gb|EAO76505.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 104 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 K+++ R+ +SQ+++ E + I+ Q K+E G N + L+ ++ I Sbjct: 4 KKLKELRINNKLSQKQIAEQMNISQQAYAKWESGKNSPSLATLEKVANFFNLSI 57 >gi|312902013|ref|ZP_07761275.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311290949|gb|EFQ69505.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 74 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +N G++IR RM +SQ +L L ++ Q + +E G R L IS L Sbjct: 18 MNTGEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFL 71 >gi|297616433|ref|YP_003701592.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297144270|gb|ADI01027.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 128 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR +R LG+S+ +L E +G++ V + E+G + + L + Sbjct: 8 LGRRIREQRQKLGLSRSQLAEIIGVSDYYVGQLERGERVMSLAVFMRFVFCLRVSPDYLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + + + F S+ +L + + +EL++ IV Sbjct: 68 TGAQNDNILSVGDPGHTHYFASSKPDPELTELLARCSSQE-----LELIKEIV 115 >gi|293364818|ref|ZP_06611535.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291316268|gb|EFE56704.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 115 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR+ R +SQ+ L E G+ + E + + L+ I L S Sbjct: 8 KYIGQRIRIIRKEKNLSQQNLSEKAGVGIDYISNLETKGSNIKIDTLEKIITALNITPSE 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F+ T + + + + QL F Sbjct: 68 LFESRITPKNPHLELLADQLTQLPQTSQEQLLEAF 102 >gi|302520734|ref|ZP_07273076.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302429629|gb|EFL01445.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 241 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D V KR+R R+ G S E+L ++ + + E G R+ L ++ L++ Sbjct: 6 DDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDT 65 Query: 69 PISFFFDVSPT 79 + + + Sbjct: 66 SLDQLVETTSD 76 >gi|94970073|ref|YP_592121.1| transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552123|gb|ABF42047.1| transcriptional regulator, XRE family with cupin sensor domain [Candidatus Koribacter versatilis Ellin345] Length = 201 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 40/97 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R+ + +LG+ G++ + K E+G L I+ V + +FF Sbjct: 21 IGEKLRALRLKKKLGLVELGKHTGLSPALLSKLERGKLFPTLPTLLRIALVFSVGLDYFF 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ + F P+ + YF +D Sbjct: 81 ADESRRHVVSVVRKDERLRFPERPNTRDVAYYFESLD 117 >gi|108800307|ref|YP_640504.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119869435|ref|YP_939387.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126435930|ref|YP_001071621.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108770726|gb|ABG09448.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119695524|gb|ABL92597.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126235730|gb|ABN99130.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 193 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+ + VD V KR+R R G + E++ I + + E G R+ L Sbjct: 1 MQANEASEDSVDQRVRKRLRELRRQRGFTLEEVAARSAIDVSTLSRLESGKRRLALDHLP 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 ++ L + S+ + Sbjct: 61 RLAAALAVTTDELLRSPEAEDPRVRSDSH 89 >gi|13471465|ref|NP_103031.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022207|dbj|BAB48817.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 187 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 2/94 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I N + +G+RI R++ S +L E G++ + E+G+ A+ L I+ Sbjct: 4 IANDISSTIGRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIAAAF 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 +S + + E + PD Sbjct: 64 GMTLSTLIARAELQGGGLLREADQPA--WRDPDT 95 >gi|152974807|ref|YP_001374324.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023559|gb|ABS21329.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 107 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + L+ I+ VL+ PI Sbjct: 2 IGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDTL 61 Query: 74 FDVSPTVCSDISSE 87 + + + + SE Sbjct: 62 LHDTTPLENQLDSE 75 >gi|323357690|ref|YP_004224086.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274061|dbj|BAJ74206.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 209 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G R+R R G++ +L E ++ + + E+G+ R + L+ ++ L + Sbjct: 17 DERLGARVRGLRKARGLTLTQLAEAAALSHPFLSQLERGLARPSMASLERLARALGTSRV 76 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 S +D +E + V+ Sbjct: 77 ELIAASEPRRADADAEPSFVLA 98 >gi|322391684|ref|ZP_08065152.1| transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145495|gb|EFX40888.1| transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 69 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ L M+Q L + +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDMTQSDLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|312862452|ref|ZP_07722695.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319945713|ref|ZP_08019964.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|311102095|gb|EFQ60295.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319748073|gb|EFW00316.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|328945360|gb|EGG39513.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1087] gi|332364441|gb|EGJ42213.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 170 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFISTPDGLQLNRYFIQIDD 112 F S + + S E N D +S ++ + I+D Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS-----EILKAVKYIED 101 >gi|310657612|ref|YP_003935333.1| transcriptional regulator [Clostridium sticklandii DSM 519] gi|308824390|emb|CBH20428.1| Transcriptional regulator [Clostridium sticklandii] Length = 144 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GK+++ R+I ++Q++L GI+ ++ YE G +L I+ L Sbjct: 4 GKKLKELRLIRNLTQKELAIKSGISDAAIRNYELGNRSPTKQQLDKIASALNCDPG 59 >gi|301386540|ref|ZP_07234958.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato Max13] gi|330879318|gb|EGH13467.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330941035|gb|EGH43955.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 127 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +SQ L E +G V +YE+G G +L I+ V Sbjct: 18 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELL 77 Query: 75 DVSPTVCS----DISSEENNVMDFISTPDGLQLNRYFI 108 V + E + + +P+ L+ FI Sbjct: 78 PGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEMLNFI 115 >gi|297204967|ref|ZP_06922364.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|297148807|gb|EDY60951.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 419 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 L R G++Q +LG +G++ +Q+ YE+G + RL+ ++ L++ Sbjct: 15 LLRRKAGLTQAQLGAAVGVSARQIASYEQGAHAPSPRRLRLMARALKTS 63 >gi|323526715|ref|YP_004228868.1| XRE family transcriptional regulator with shikimate kinase activity [Burkholderia sp. CCGE1001] gi|323383717|gb|ADX55808.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1001] Length = 330 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 17/132 (12%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ Sbjct: 31 TGEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQ 90 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY-------FIQID 111 I+ L P++ V D ++ + + + D L R F Q Sbjct: 91 IAATLNCPLA-------EVIGDETTASAEWLLIRELLHGRDQAALQRARMALAEMFAQAP 143 Query: 112 DVKVRQKIIELV 123 R+ I L+ Sbjct: 144 RDPHRKDRIALI 155 >gi|268610104|ref|ZP_06143831.1| hypothetical protein RflaF_11484 [Ruminococcus flavefaciens FD-1] Length = 119 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R L +SQ +L E I+ + K E G + G S L ISE L+ Sbjct: 11 IGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQISTDKLL 70 Query: 75 DVSPTVCSDISSEE 88 + I++++ Sbjct: 71 RPDIPETTIIAADD 84 >gi|229521883|ref|ZP_04411300.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] gi|229340808|gb|EEO05813.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] Length = 181 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ E+ S F Sbjct: 9 QIANQLKKLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S ++ Sbjct: 69 FANDPQLLSSERSFPDDP 86 >gi|227535713|ref|ZP_03965762.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186680|gb|EEI66747.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 257 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +NVG+R++ R G+S + L +G++ V +YEKG + +V + ++ L+ Sbjct: 1 MNVGERMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVPIEVVAKVANALDIKPE 60 Query: 72 FFFDVSPTVCSDISSE 87 + D + Sbjct: 61 VLMGLKADTVVDKIHD 76 >gi|167745764|ref|ZP_02417891.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662] gi|167654795|gb|EDR98924.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662] Length = 149 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE + LG++ Q + K+E G + ++++ + + Sbjct: 1 MNLGNSLFNARKKSGLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + + EN Sbjct: 61 LIEFDIELKEIEQAIEN 77 >gi|326385716|ref|ZP_08207345.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM 19370] gi|326209695|gb|EGD60483.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM 19370] Length = 135 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI R + G+SQ +L E LGI+ + YE+G AS + + E + Sbjct: 8 IGTRIAEVRRLKGLSQVQLAEELGISKPGLANYERGFRVPPASLVADLCEKHGVSAGWL 66 >gi|319655076|ref|ZP_08009143.1| hypothetical protein HMPREF1013_05766 [Bacillus sp. 2_A_57_CT2] gi|317393240|gb|EFV74011.1| hypothetical protein HMPREF1013_05766 [Bacillus sp. 2_A_57_CT2] Length = 65 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +R++R ++QE++ + +G + + +YE+ R LQ +++ ++ Sbjct: 5 LGGNLRIQRFKKNLTQEEVAKAIGTSHSMIGRYERNKTRPRRGTLQKLADFYGVSVN 61 >gi|317488096|ref|ZP_07946673.1| hypothetical protein HMPREF1023_00371 [Eggerthella sp. 1_3_56FAA] gi|316912804|gb|EFV34336.1| hypothetical protein HMPREF1023_00371 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR RR +SQ+KL +G + + + E G VG L I++ L+ + Sbjct: 8 VLLGSAIRERREAQSLSQQKLALMIGSSKSHIWRIESGRVSVGLDDLGRIADALDVQVRD 67 Query: 73 FF 74 F Sbjct: 68 LF 69 >gi|332653120|ref|ZP_08418865.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518266|gb|EGJ47869.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 71 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R G++Q+ LG +G + Q + E+G + I++V + + F Sbjct: 3 LGNRLKELRAAKGLNQQGLGSLVGASRQTISLIERGDYNPSITLALRIAKVFGTTVDEVF 62 >gi|295135771|ref|YP_003586447.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294983786|gb|ADF54251.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 152 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL Sbjct: 21 HIGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSEH-IEDEKLEKVAKVLGVS 75 >gi|294678117|ref|YP_003578732.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294476937|gb|ADE86325.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 451 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 10/130 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR+ L + Q L +GI+ + E RV L ++ L + Sbjct: 8 GTRIRERRLTLKLRQADLARAVGISAAYLNLIEHNRRRVSEPLLDTFAKALGVAPVALSE 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-------RSIVS 128 + + + E + + I D ++I E V + + + Sbjct: 68 GAESALFEALREAAAGVAGGAGTGTGDAVGALI---DPSELERIEEFVGRFPGWAKVLAA 124 Query: 129 SEKKYRTIEE 138 + + +E Sbjct: 125 RQSRLAALER 134 >gi|268608723|ref|ZP_06142450.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 238 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 6/93 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I L+R +SQ++ LGI+ + YEKG+ G + L I++ + +P Sbjct: 9 ITLQRKERHISQKQAATDLGISQALLSHYEKGIRECGLNFLVKIADYYNVSCDYLLGRTP 68 Query: 79 TVCS------DISSEENNVMDFISTPDGLQLNR 105 DI ++ N + +P+ + NR Sbjct: 69 EPEGKTITIEDIPDDDGNNTLKMPSPEIINFNR 101 >gi|163848207|ref|YP_001636251.1| helix-turn-helix domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526115|ref|YP_002570586.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669496|gb|ABY35862.1| helix-turn-helix domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449994|gb|ACM54260.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 181 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G++ +++ E G+T + + E+ + + L+ +++ ++ Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60 Query: 73 FFDVSPTV 80 FF+ Sbjct: 61 FFEGEDDQ 68 >gi|154490356|ref|ZP_02030617.1| hypothetical protein PARMER_00589 [Parabacteroides merdae ATCC 43184] gi|154088967|gb|EDN88011.1| hypothetical protein PARMER_00589 [Parabacteroides merdae ATCC 43184] Length = 196 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 7/82 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 ++GN KI +G +I+ R +S +++ E G++ +Q+++ E ++ + L Sbjct: 2 LMGNNKI-------IGAKIKSIRESKQLSTQEVSERSGLSIEQIERIEGNIDFPSLAPLI 54 Query: 61 HISEVLESPISFFFDVSPTVCS 82 I+ VL + F D + Sbjct: 55 KIARVLGVRLGTFLDDQSELGP 76 >gi|62179766|ref|YP_216183.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127399|gb|AAX65102.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 259 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M +L E +G+ + + E G + L +++ L I+ Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIA 60 Query: 72 FFFDVSPTVC-----SDISSEENNVMDFIS 96 F SD+ + NV D Sbjct: 61 ELFTSDSKGNTVCKHSDMRKDSANVKDLFR 90 >gi|148261636|ref|YP_001235763.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405126|ref|YP_004285208.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146403317|gb|ABQ31844.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325051988|dbj|BAJ82326.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 110 Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 19/128 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+ P +VG+RIR R+ ++Q++ LG++ + ++E L+ Sbjct: 1 MAPKKQTPPE---SVGQRIRALRLANNLTQDEFAAQLGVSRSAIAQWETDRAGQVRENLE 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 IS+VL + I++ D L L R + + RQ ++ Sbjct: 58 RISKVLGTSIAYLVSGETGSLQG---------------DELALMRLYRACA-AEDRQILL 101 Query: 121 ELVRSIVS 128 + + Sbjct: 102 RTAKRLAR 109 >gi|299132893|ref|ZP_07026088.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593030|gb|EFI53230.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 118 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+R R + G+SQ L G+ V +E G + L+ +++ L+ + Sbjct: 12 KRLREARDLRGLSQALLAAKAGLPPASVSHFESGPRKPSFDNLKALAKALDVTTDYLLGR 71 Query: 77 S--PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S P ++ + + +S+ D L+L + F Sbjct: 72 SETPDASAETVGRLHRDLHKLSSQD-LELAQDF 103 >gi|257868272|ref|ZP_05647925.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874455|ref|ZP_05654108.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|325568146|ref|ZP_08144587.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|257802386|gb|EEV31258.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808619|gb|EEV37441.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|325158347|gb|EGC70498.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 110 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R+ +Q+++ + LGIT +E N + ++E+ + F Sbjct: 2 LGERLRTLRLRTNQTQQQIADQLGITRAAYSHFENDRNEPDGETIVKLAEIFQVSTDFL 60 >gi|302530702|ref|ZP_07283044.1| transcriptional regulator [Streptomyces sp. AA4] gi|302439597|gb|EFL11413.1| transcriptional regulator [Streptomyces sp. AA4] Length = 187 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G++ L GI+ + + E G R L +S + PI Sbjct: 11 VGPRLRALRTRRGITLADLSAETGISESTLSRLENGQRRANLELLLPLSRAYDVPIDDL 69 >gi|238917699|ref|YP_002931216.1| hypothetical protein EUBELI_01779 [Eubacterium eligens ATCC 27750] gi|238873059|gb|ACR72769.1| Hypothetical protein EUBELI_01779 [Eubacterium eligens ATCC 27750] Length = 213 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ M+Q++L + G+ ++ YE G + L +I+ L F+ Sbjct: 9 VGYLIRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVS---FY 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 +S ++I S + + D Sbjct: 66 ALSDPDVANIFSALHVLFDI 85 >gi|229155430|ref|ZP_04283539.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342] gi|228627991|gb|EEK84709.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342] Length = 157 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++++ R SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLD 59 >gi|162448594|ref|YP_001610961.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159176|emb|CAN90481.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 230 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V ++ R G+S E+L + G++ + + E G + + L I+ L P S Sbjct: 51 VASNLKRFRAERGLSLERLAKASGVSRAMLGQIELGQSTPTINVLWKIARALGVPFSALM 110 >gi|149909139|ref|ZP_01897797.1| hypothetical protein PE36_17760 [Moritella sp. PE36] gi|149807890|gb|EDM67835.1| hypothetical protein PE36_17760 [Moritella sp. PE36] Length = 68 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 INVG +I++RR + +SQ+KL I V + E+G + +L I+EVLE Sbjct: 6 INVGLKIKVRRKEMRVSQDKLALLADIDRSYVGRIERGEVNITLEKLYQIAEVLECD 62 >gi|153953129|ref|YP_001393894.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346010|gb|EDK32546.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 65 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R QE L LG+T Q + E ++ +L + + F+ Sbjct: 5 IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLFEPD 63 >gi|124516094|gb|EAY57603.1| putative transcriptional regulator, XRE family [Leptospirillum rubarum] Length = 121 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ K I N D + +G RIR R MSQ E LGI +++ ++E G L Sbjct: 1 MIYQKGIDNNWDPLGLGARIRHLRG--NMSQTAFAELLGIRQEEISRFESGSRVPSVELL 58 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVM 92 +S + + + + + EE+ + Sbjct: 59 VRLSGIHKVTLDWLVMGGTSGGEGSVREEDTPL 91 >gi|49082636|gb|AAT50718.1| PA4499 [synthetic construct] Length = 188 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 2/99 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+R+R R + ++ G+T + + E+ + V S L +I++ L P+ Sbjct: 3 VDR-IGERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFI 108 + FD D E P + L+ F Sbjct: 62 NALFDQPAQPQPDSHEGERVRYTIEGQPLAYERLSSSFP 100 >gi|46581469|ref|YP_012277.1| DNA-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|120601361|ref|YP_965761.1| cupin 2 domain-containing protein [Desulfovibrio vulgaris DP4] gi|46450891|gb|AAS97537.1| DNA-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|120561590|gb|ABM27334.1| transcriptional regulator, MerR family [Desulfovibrio vulgaris DP4] gi|311235121|gb|ADP87975.1| Cupin 2 conserved barrel domain protein [Desulfovibrio vulgaris RCH1] Length = 189 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R GMS+E+L E G+T + + E+ LQ ++ L + F Sbjct: 6 LGARVRKYREDRGMSREQLSEAAGLTVEFIAALEEDNLYPSIGPLQKVARALNVRLGTFM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D T ++ + D Sbjct: 66 DDEVTKDPIVARRGDREADLTMQK 89 >gi|45358556|ref|NP_988113.1| XRE family transcriptional regulator [Methanococcus maripaludis S2] gi|44921314|emb|CAF30549.1| conserved hypothetical helix-turn-helix protein [Methanococcus maripaludis S2] Length = 66 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R M+QE LG+ +G+ + + EKG IS+ L I F Sbjct: 4 RIKEYRAKYDMTQEDLGKIVGVRRETIGFLEKGKYNPSLKLAHAISKALNVKIDDLF 60 >gi|186681969|ref|YP_001865165.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464421|gb|ACC80222.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 83 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ +D +G ++ RR G SQE L E G+ + + E+G+ L HI++ L Sbjct: 3 PSKLDQILGLELQRRRTEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITKALG 62 Query: 68 SPISFF 73 +S F Sbjct: 63 MTMSEF 68 >gi|330814715|ref|YP_004362890.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3] gi|327374707|gb|AEA66058.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3] Length = 111 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 1 MVGNKKIP----NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M + K P NP+ VG+R++ R+ G SQE L ++ + E G Sbjct: 5 MNASAKTPTFERNPITQAVGRRLKEVRLQAGKSQEDLAHEAAVSRVAISAVESGAANTTV 64 Query: 57 SRLQHISEVLESPISFFF 74 L + L +S F Sbjct: 65 LTLAALCRPLGISLSELF 82 >gi|326331894|ref|ZP_08198181.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325950391|gb|EGD42444.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 209 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 6/94 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R ++ L E GI+ + + E G+ R +L ++ + Sbjct: 12 VGPRLKQLRQRRDITLSHLAEETGISTSTLSRLEAGLRRPTLEQLLPLARAYGVTLDDLV 71 Query: 75 DVSPTVCSDIS------SEENNVMDFISTPDGLQ 102 D PT I+ ++ + ++ P G+Q Sbjct: 72 DAPPTGNPRINLRPIPCADGSMILPLTRRPGGIQ 105 >gi|325848872|ref|ZP_08170382.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480516|gb|EGC83578.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 168 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 10/104 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + I+ RR L M+QE+L + G T + + EKG + S+++ + L + S+ Sbjct: 4 LSNNIKKRRNELNMTQEELAKKTGYKTKGAISRIEKGERDLSQSQIEIFANALSTTPSYL 63 Query: 74 FDVSPTVCSD-------ISSEENNVMDF--ISTPDGLQLNRYFI 108 S+ +S EE ++D P+G + + Sbjct: 64 MGWEDDKKSENIKPISPLSPEEKQILDPYKQLNPEGQEKAISYT 107 >gi|319745678|gb|EFV97977.1| DNA-binding protein [Streptococcus agalactiae ATCC 13813] Length = 197 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLD 59 >gi|295087511|emb|CBK69034.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 74 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G+R+R R MSQE+L + + + E+ V ++ I++ LE I Sbjct: 6 IKFGERVRQLRKEKRMSQEELADKANLHRTYIGMIERAEKNVTLINIEKIAKALEVSIQD 65 Query: 73 FF 74 FF Sbjct: 66 FF 67 >gi|307727212|ref|YP_003910425.1| Cupin 2 conserved barrel domain-containing protein [Burkholderia sp. CCGE1003] gi|307587737|gb|ADN61134.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1003] Length = 190 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 12 LEVGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 F D S ++ F + G QL +++ + R ++ Sbjct: 72 FVDTPSEERSVSRGDQLKFFGFADSANLFARLTNVAGGRQLEAILVKMPPGQKRSEV 128 >gi|282915477|ref|ZP_06323249.1| transcriptional regulator [Staphylococcus aureus subsp. aureus D139] gi|282320580|gb|EFB50918.1| transcriptional regulator [Staphylococcus aureus subsp. aureus D139] Length = 391 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|255655987|ref|ZP_05401396.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|296450586|ref|ZP_06892339.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296879295|ref|ZP_06903290.1| probable phage regulatory protein [Clostridium difficile NAP07] gi|296260430|gb|EFH07272.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296429838|gb|EFH15690.1| probable phage regulatory protein [Clostridium difficile NAP07] Length = 123 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R L ++Q++L +GIT + +YE + + + +++ LE+ + Sbjct: 4 LGDRIANLRKELDINQKELATKVGITEASLSRYENNLREPKSEIIVRLAKALETSTDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 V+ +IS E+ +++ +S + Sbjct: 64 GVNDNT--NISKEDKLIIENLSVSE 86 >gi|225375203|ref|ZP_03752424.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] gi|225212954|gb|EEG95308.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] Length = 187 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 9/109 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R G++Q +L + L +T + V K+E+GV L+ +++VL+ + Sbjct: 6 LGIFITELRKEKGLTQAQLAQKLNVTDKAVSKWERGVGFPDIKLLEPLADVLDISLLELM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S + S + F + + L Y +I+ RQ+I LV Sbjct: 66 K-SERLPKTTVSAPDTTDAF---QNVIDLASYERKIE----RQRI-ALV 105 >gi|226324530|ref|ZP_03800048.1| hypothetical protein COPCOM_02314 [Coprococcus comes ATCC 27758] gi|225206978|gb|EEG89332.1| hypothetical protein COPCOM_02314 [Coprococcus comes ATCC 27758] Length = 121 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 6/115 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K ++ N G R+R R G++Q L E L + + + E G + + + SE Sbjct: 2 KERYSMEKNFGTRVRQARHKAGLTQAALAEKLNLDETTISRIENGSQATSFATMLNFSEA 61 Query: 66 LESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L+ + D ++D I+ L + ++ +RQ + Sbjct: 62 LDVKFDYLICDYLDDSIHSKDPINAEILDMIT-----PLPDNYKRLIRDNIRQLL 111 >gi|210613950|ref|ZP_03289987.1| hypothetical protein CLONEX_02200 [Clostridium nexile DSM 1787] gi|210150910|gb|EEA81918.1| hypothetical protein CLONEX_02200 [Clostridium nexile DSM 1787] Length = 108 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G IR R LG++QE++ E L + E+ S I++ L + Sbjct: 4 IDSRLGDMIRSYREKLGLTQEEMAERLQVNLTHYGNIERAACNPSFSLFLRIAKELNLSV 63 Query: 71 -SFFFDVSPTVCSDIS 85 ++ + ++I+ Sbjct: 64 DAYLYSTRDDTAAEIT 79 >gi|254380659|ref|ZP_04996025.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194339570|gb|EDX20536.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 296 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 22/128 (17%) Query: 1 MVGNKKIPNPVDINV-------GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 MV ++ P P V G+RI RR LG+++E++G+ G V E+ Sbjct: 1 MVVSRNKPGPASTEVPAGRTDLGRRIAARRQELGLTREQVGKRCGADATYVAYLEEHAAA 60 Query: 54 VGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 L I++ L + ++ + + + + + L Sbjct: 61 PAIGSLARIADALGTTVA-------ELTGATTGYPPGRGTALRDAELITLTDA------- 106 Query: 114 KVRQKIIE 121 R++++ Sbjct: 107 -ERRRLLS 113 >gi|167834922|ref|ZP_02461805.1| hypothetical protein Bpse38_00430 [Burkholderia thailandensis MSMB43] Length = 131 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-S 71 +N R+ + R G++Q++L + + QV +YE G +R ++ ++ L + Sbjct: 1 MNFSDRLAMLRKQRGLTQQQLADRAKVHLVQVNRYEAGASRPAVDVVKRLAVALSVSADA 60 Query: 72 FFFDVSP 78 FD Sbjct: 61 LLFDEDE 67 >gi|160914966|ref|ZP_02077180.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991] gi|158433506|gb|EDP11795.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991] Length = 144 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + + R G+SQE + E LG++ Q + K+E + + ++ + + Sbjct: 1 MNIGNHLMMARKRKGLSQESVAEKLGVSRQTISKWETCETLPDICQAKTLATIYGISLDE 60 Query: 73 F--FDVSPTVCSDISSEENN 90 FD DI + Sbjct: 61 LITFDSDVQELQDIIERTSE 80 >gi|29337279|gb|AAD39136.2|AF123569_4 NmeSIC [Neisseria meningitidis] Length = 71 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GKR++ R++ G SQE+L E +G+ + E+G + + +++ IS Sbjct: 6 VEFGKRVKHYRLLNGWSQEELAEKVGLHRTYIGSVERGERNISLLNISLLAKSFSINISE 65 Query: 73 FFDV 76 + Sbjct: 66 LVEG 69 >gi|322376588|ref|ZP_08051081.1| putative transcriptional regulator [Streptococcus sp. M334] gi|321282395|gb|EFX59402.1| putative transcriptional regulator [Streptococcus sp. M334] Length = 158 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|320326795|gb|EFW82833.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882738|gb|EGH16887.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 118 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R G +Q++L + +G + +YE+GV L + L+ + Sbjct: 6 AFIGVRVRAFRKAHGFNQDQLAKLVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPA- 64 Query: 73 FFDVSPTVCSDISSE 87 ++ P S E Sbjct: 65 --ELLPADGISSSRE 77 >gi|302331894|gb|ADL22087.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 391 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|261820979|ref|YP_003259085.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604992|gb|ACX87478.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 99 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+RL R+ G+ Q +LG G+ +V +YE+ V+ + + VL+ P Sbjct: 6 IGKRLRLARVNKGLKQAELGCLAGLDEETASSRVSQYEREVSAPDFGLVSRFATVLDVPE 65 Query: 71 SFFFDVSPTVCS 82 ++F+ V + + Sbjct: 66 AYFYAVDDDLAT 77 >gi|225575463|ref|ZP_03784073.1| hypothetical protein RUMHYD_03553 [Blautia hydrogenotrophica DSM 10507] gi|225037315|gb|EEG47561.1| hypothetical protein RUMHYD_03553 [Blautia hydrogenotrophica DSM 10507] Length = 369 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R G++QE++ E LG++ V K+E G S L ++ +L + I+ Sbjct: 7 IRRKRRECGLTQEQVAERLGVSTPAVNKWENGTTCPDISLLAPLARLLRTDINTLLCFQE 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + E + + +G++ F I + KVR+ Sbjct: 67 DLTEENVVEYTTQITKAAQSEGIE--EAFRLIQE-KVRE 102 >gi|41406396|ref|NP_959232.1| hypothetical protein MAP0298 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394745|gb|AAS02615.1| hypothetical protein MAP_0298 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 502 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 5/109 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + L ++E + P +F Sbjct: 35 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYFAP 94 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDD--VKVRQKIIE 121 S I+ + + +TP + +L I V + +++ + Sbjct: 95 DSDARL--IADLREVLAETPATPGQVEELVARMPAIGQTLVNLHRRLHD 141 >gi|19746274|ref|NP_607410.1| hypothetical protein spyM18_1303 [Streptococcus pyogenes MGAS8232] gi|19748461|gb|AAL97909.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232] Length = 52 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFF 74 MSQE+L G++ + E + V S LQ ++ L+ PI +FF Sbjct: 1 MSQEELANKSGVSRTTISLIETDKSTTVKLSTLQKLAVALDVPIGYFF 48 >gi|53712090|ref|YP_098082.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|52214955|dbj|BAD47548.1| putative transcriptional regulator [Bacteroides fragilis YCH46] Length = 70 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +IR RR +LG++Q+ L + I+ + K E G + +L I EVL +S Sbjct: 2 KQIGIQIRQRRKMLGINQQTLADLAQISINTITKIENGEININFQKLYAILEVLGLELS 60 >gi|15923137|ref|NP_370671.1| transcription regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15925851|ref|NP_373384.1| hypothetical protein SA0142 [Staphylococcus aureus subsp. aureus N315] gi|148266573|ref|YP_001245516.1| hypothetical protein SaurJH9_0133 [Staphylococcus aureus subsp. aureus JH9] gi|150392612|ref|YP_001315287.1| hypothetical protein SaurJH1_0138 [Staphylococcus aureus subsp. aureus JH1] gi|156978477|ref|YP_001440736.1| hypothetical protein SAHV_0146 [Staphylococcus aureus subsp. aureus Mu3] gi|253316322|ref|ZP_04839535.1| hypothetical protein SauraC_09311 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255004944|ref|ZP_05143545.2| hypothetical protein SauraM_00705 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794038|ref|ZP_05643017.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258408554|ref|ZP_05680839.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421144|ref|ZP_05684071.1| transcription regulator [Staphylococcus aureus A9719] gi|258438894|ref|ZP_05689985.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258444129|ref|ZP_05692463.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258447008|ref|ZP_05695158.1| transcription regulator [Staphylococcus aureus A6300] gi|258448466|ref|ZP_05696579.1| transcription regulator [Staphylococcus aureus A6224] gi|258455699|ref|ZP_05703654.1| transcription regulator [Staphylococcus aureus A5937] gi|269201799|ref|YP_003281068.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282894370|ref|ZP_06302600.1| hypothetical protein SGAG_01720 [Staphylococcus aureus A8117] gi|282926254|ref|ZP_06333886.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295405418|ref|ZP_06815228.1| hypothetical protein SMAG_00571 [Staphylococcus aureus A8819] gi|296276513|ref|ZP_06859020.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297244755|ref|ZP_06928635.1| hypothetical protein SLAG_00845 [Staphylococcus aureus A8796] gi|13700063|dbj|BAB41362.1| SA0142 [Staphylococcus aureus subsp. aureus N315] gi|14245914|dbj|BAB56309.1| similar to transcription regulator [Staphylococcus aureus subsp. aureus Mu50] gi|147739642|gb|ABQ47940.1| protein of unknown function DUF955 [Staphylococcus aureus subsp. aureus JH9] gi|149945064|gb|ABR51000.1| protein of unknown function DUF955 [Staphylococcus aureus subsp. aureus JH1] gi|156720612|dbj|BAF77029.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788010|gb|EEV26350.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257840563|gb|EEV65022.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842568|gb|EEV66990.1| transcription regulator [Staphylococcus aureus A9719] gi|257847770|gb|EEV71766.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257850388|gb|EEV74336.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854021|gb|EEV76974.1| transcription regulator [Staphylococcus aureus A6300] gi|257858097|gb|EEV80985.1| transcription regulator [Staphylococcus aureus A6224] gi|257861911|gb|EEV84684.1| transcription regulator [Staphylococcus aureus A5937] gi|262074089|gb|ACY10062.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282591583|gb|EFB96654.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282763415|gb|EFC03545.1| hypothetical protein SGAG_01720 [Staphylococcus aureus A8117] gi|285815872|gb|ADC36359.1| Putative transcription regulator [Staphylococcus aureus 04-02981] gi|294969493|gb|EFG45512.1| hypothetical protein SMAG_00571 [Staphylococcus aureus A8819] gi|297178272|gb|EFH37519.1| hypothetical protein SLAG_00845 [Staphylococcus aureus A8796] gi|312828665|emb|CBX33507.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130120|gb|EFT86108.1| hypothetical protein CGSSa03_04609 [Staphylococcus aureus subsp. aureus CGS03] gi|329725707|gb|EGG62186.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 391 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|332362028|gb|EGJ39830.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q+ +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|325690230|gb|EGD32234.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 225 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQASIYQELGISRKAYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|323702211|ref|ZP_08113878.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532898|gb|EGB22770.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 255 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R G++Q +L G+T + + E+G + L+ +SEV+ +F Sbjct: 139 LGYKLKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSPCYFI 198 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 V +S + + + P Sbjct: 199 MEPGAVDQMVSLMNPELRELLIHP 222 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 31/55 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G++IR+ R MS ++L + +GI+ + + E+G + L+ ++E L P Sbjct: 74 LGEKIRIIRTENNMSLQELADKIGISLSYLSEIERGTVYPALNTLKRVAEGLGVP 128 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 8/96 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR R G + + L ++ + + E+G R + ++ L + + Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKTQLVE 64 Query: 76 VSPTVCS--------DISSEENNVMDFISTPDGLQL 103 T I +E N + ++ G+ L Sbjct: 65 GEITDSGLSLGEKIRIIRTENNMSLQELADKIGISL 100 >gi|323140678|ref|ZP_08075600.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414863|gb|EFY05660.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 205 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ +L G+ + +Q YE K +N+ A + +++ L + Sbjct: 144 RLKSFRSTNGLSQNELARVSGVNSRSIQMYEQRRKDINKASAETVWRLAKALNCGMEDLL 203 Query: 75 DV 76 +V Sbjct: 204 EV 205 >gi|322376311|ref|ZP_08050804.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321282118|gb|EFX59125.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 158 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q+ +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|309798569|ref|ZP_07692844.1| conserved domain protein [Streptococcus infantis SK1302] gi|322387445|ref|ZP_08061055.1| transcriptional regulator [Streptococcus infantis ATCC 700779] gi|308117805|gb|EFO55206.1| conserved domain protein [Streptococcus infantis SK1302] gi|321141974|gb|EFX37469.1| transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 69 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ L M+Q L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDMTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|304437578|ref|ZP_07397533.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369391|gb|EFM23061.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 104 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V + I R G+++ L + LG++ Q + E G R+ R++ I + L S Sbjct: 32 VTVNQNIERVRRAKGVTKTHLAKVLGMSLQGYRYLENGSVRLDVERMKVIGDALGVDSSI 91 Query: 73 FFDV 76 F D Sbjct: 92 FLDD 95 >gi|240139351|ref|YP_002963826.1| hypothetical protein MexAM1_META1p2796 [Methylobacterium extorquens AM1] gi|240009323|gb|ACS40549.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 87 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R+ G+SQE+L GI V + E+G V S L+ ++ L P++ Sbjct: 7 IGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPVAHL 65 >gi|228924819|ref|ZP_04087976.1| transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834828|gb|EEM80310.1| transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 186 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+GK+I R MSQE+L + ++ Q + +E N L +S + + Sbjct: 1 MNIGKQIHYFRKRDNMSQEELAAKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLD 59 >gi|229027921|ref|ZP_04184076.1| Transcriptional regulator Xre [Bacillus cereus AH1271] gi|229170925|ref|ZP_04298528.1| Transcriptional regulator Xre [Bacillus cereus MM3] gi|228612591|gb|EEK69810.1| Transcriptional regulator Xre [Bacillus cereus MM3] gi|228733435|gb|EEL84262.1| Transcriptional regulator Xre [Bacillus cereus AH1271] Length = 67 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE + LG++ + + E+G + +++ L+ + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSV 61 >gi|126699926|ref|YP_001088823.1| putative transcriptional regulator [Clostridium difficile 630] gi|254975889|ref|ZP_05272361.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255093277|ref|ZP_05322755.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255315019|ref|ZP_05356602.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517694|ref|ZP_05385370.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650804|ref|ZP_05397706.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255656283|ref|ZP_05401692.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|260683886|ref|YP_003215171.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260687546|ref|YP_003218680.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296450276|ref|ZP_06892037.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296878691|ref|ZP_06902696.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|306520704|ref|ZP_07407051.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|115251363|emb|CAJ69195.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260210049|emb|CBA64125.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213563|emb|CBE05326.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296261039|gb|EFH07873.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296430498|gb|EFH16340.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 66 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R + ++QE+L E +G+ + + + E G IS+++++PI F Sbjct: 7 NLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63 >gi|2498836|sp|Q47587|RDGA_PECCC RecName: Full=HTH-type transcriptional regulator rdgA gi|476017|gb|AAA24865.1| pectin lyase regulation DNA-binding protein [Pectobacterium carotovorum] gi|1094252|prf||2105355A rdgA gene Length = 244 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G+SQ+ LG+ +G++ +QK E G +++ +S L + + Sbjct: 7 ERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKAS-QTTKIVELSNNLRVRPEWLANG 65 Query: 77 SPTVCS 82 + S Sbjct: 66 EGPMRS 71 >gi|323352799|ref|ZP_08087769.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121835|gb|EFX93581.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|325688158|gb|EGD30177.1| transcriptional regulator [Streptococcus sanguinis SK72] gi|325694179|gb|EGD36097.1| transcriptional regulator [Streptococcus sanguinis SK150] gi|327469090|gb|EGF14562.1| transcriptional regulator [Streptococcus sanguinis SK330] gi|328945639|gb|EGG39790.1| transcriptional regulator [Streptococcus sanguinis SK1087] gi|332363393|gb|EGJ41178.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 65 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R M+Q L + +G+T Q + E G S I + L + F Sbjct: 6 RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62 >gi|322386886|ref|ZP_08060510.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269168|gb|EFX52104.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 65 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R M+Q L + +G+T Q + E G S I + L + F Sbjct: 6 RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62 >gi|325679879|ref|ZP_08159448.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108317|gb|EGC02564.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 119 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R L +SQ +L E I+ + K E G + G S L ISE L+ Sbjct: 11 IGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQISTDKLL 70 Query: 75 DVSPTVCSDISSEE 88 + I++++ Sbjct: 71 RPDIPETTIIAADD 84 >gi|283469388|emb|CAQ48599.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus ST398] Length = 391 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|240143278|ref|ZP_04741879.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257204756|gb|EEV03041.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 210 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ ++Q++L E G+ ++ YE G + L +I+ L FF Sbjct: 9 VGVLIRNFRIAAELTQKELAERCGLNESTIRNYELGNRYPDEATLLNIANHLNVS---FF 65 Query: 75 DVSPTVCSDISSEENNVMD 93 +S ++I S + + D Sbjct: 66 ALSDPDVANIFSALHVLFD 84 >gi|225019957|ref|ZP_03709149.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum DSM 5476] gi|224947321|gb|EEG28530.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum DSM 5476] Length = 125 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ R ++Q+ + + + +T + YE GVN + +++ + Sbjct: 1 MIISQRLKDLRSDADLNQQDVADAVNVTQSSISNYELGVNLPDLDVVIKLAKFFNVSSDY 60 Query: 73 FFDVSPTVCS 82 ++ S Sbjct: 61 LLGITDVKTS 70 >gi|210620982|ref|ZP_03292367.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] gi|210154966|gb|EEA85972.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] Length = 204 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 36/64 (56%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ N+G +I+ R M+ + + E ++ + + E+G+ V L+ I++VLE + Sbjct: 1 MNKNIGAKIKRLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLEKIADVLEVDL 60 Query: 71 SFFF 74 ++FF Sbjct: 61 TYFF 64 >gi|170737741|ref|YP_001779001.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819929|gb|ACA94511.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 185 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 14 IRDLRKHRKITLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 79 T 79 Sbjct: 74 P 74 >gi|152985545|ref|YP_001349953.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960703|gb|ABR82728.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 237 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R +SQ +L + +G+T + E+G +R S + I+ + + Sbjct: 6 RIKAARKHANLSQVQLAQAVGMTQTSISDLERGKSR-ATSFVAQIAGACGVNPLWLAEGR 64 Query: 78 PTVCSDISSE 87 + ++ Sbjct: 65 GEMLAERGQA 74 >gi|89894695|ref|YP_518182.1| hypothetical protein DSY1949 [Desulfitobacterium hafniense Y51] gi|89334143|dbj|BAE83738.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 218 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R MSQ L L ++ Q V K+E + +L +SEV + Sbjct: 11 MTLGEKIYELRTKNAMSQGDLANTLEVSRQSVSKWENNTSVPELDKLVKMSEVFSISLD- 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ ++ E D + P GL Sbjct: 70 --ELIRGEKTEEMQRETQSPDISAPPKGL 96 >gi|77408024|ref|ZP_00784773.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413847|ref|ZP_00790025.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160087|gb|EAO71220.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173386|gb|EAO76506.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 112 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R ++Q+ + G + Q++E G + A L+ + + Sbjct: 4 ERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESGKKKPSAETLEKFASFFNVSTDYL 60 >gi|310764970|gb|ADP09920.1| RstR1 [Erwinia sp. Ejp617] gi|310764977|gb|ADP09927.1| RstR1 [Erwinia sp. Ejp617] Length = 122 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 R R G++Q ++ + +GI QV++YE G + L+ I+ + F+ Sbjct: 17 ARFLQLRKQHGLTQPQMADKVGIHLTQVRRYESGETQPSLDILKRIAVTFSVSADWLIFE 76 Query: 76 VSPTVCSD 83 D Sbjct: 77 EGEREPQD 84 >gi|294501848|ref|YP_003565548.1| Cro/CI family transcriptional regulator [Bacillus megaterium QM B1551] gi|294351785|gb|ADE72114.1| transcriptional regulator, Cro/CI family [Bacillus megaterium QM B1551] Length = 140 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R+ G SQE+L L ++ + K+E + + + + Sbjct: 5 GERIKHFRLKGGFSQEELANQLNVSRTTISKWECSKQTPSIFDFLSLCNCFQITLDQLIE 64 Query: 76 VSP 78 S Sbjct: 65 PSS 67 >gi|326203161|ref|ZP_08193027.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] gi|325986807|gb|EGD47637.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] Length = 70 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI++ R +Q L E +GI+ Q + EK I+EV I+ F+ Sbjct: 4 NRIKVLRAERDWTQADLAEMVGISRQAIISIEKYKYTPSLELAFKIAEVFNVLITEVFEH 63 Query: 77 SPTVCSD 83 + +D Sbjct: 64 KEDMNND 70 >gi|229028494|ref|ZP_04184614.1| Transcriptional regulator [Bacillus cereus AH1271] gi|228732807|gb|EEL83669.1| Transcriptional regulator [Bacillus cereus AH1271] Length = 66 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q++L E +G+T Q + EKG I V++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYVVDKTLNDLF 61 >gi|223041672|ref|ZP_03611869.1| hypothetical protein AM202_0280 [Actinobacillus minor 202] gi|223017536|gb|EEF15950.1| hypothetical protein AM202_0280 [Actinobacillus minor 202] Length = 234 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG+ IRL R G++ + + + KYEKG + L IS+ L+ + Sbjct: 3 INQEVGQLIRLARKKRGLTLNDFSKLIYKNPSTISKYEKGEIIIDIPTLYAISKALDVEM 62 Query: 71 S 71 Sbjct: 63 D 63 >gi|218133316|ref|ZP_03462120.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC 43243] gi|217992189|gb|EEC58193.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC 43243] Length = 217 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 K IR RR+ L MSQ+ L E G + K EKG + S+++ ++ L+ Sbjct: 12 KNIRERRIELKMSQDTLAELTGYRDRSSIAKIEKGEVDISESKIREFAKALKVSPG 67 >gi|212223696|ref|YP_002306932.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212008653|gb|ACJ16035.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 190 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IP P+D K IR R LG++QE+L E G+T + K E G S I + L Sbjct: 4 IPRPIDP---KEIRRIRKELGITQEELAEKAGVTQAYIAKLEAGKVDPRLSTFNRILQAL 60 >gi|169829011|ref|YP_001699169.1| hypothetical protein Bsph_3551 [Lysinibacillus sphaericus C3-41] gi|168993499|gb|ACA41039.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 68 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 RIR R ++QE L + +G++ Q + E G +IS+ Sbjct: 3 NRIRELRKSRKITQEDLSKLVGVSRQSIIAIESGKFNPSLELAYNISKAFNC 54 >gi|160932614|ref|ZP_02080004.1| hypothetical protein CLOLEP_01456 [Clostridium leptum DSM 753] gi|156868573|gb|EDO61945.1| hypothetical protein CLOLEP_01456 [Clostridium leptum DSM 753] Length = 86 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +RIR R +SQ L + L ++ +YE G + ++ L ++ + + + Sbjct: 25 QRIRDLREDRDLSQAALAKLLNVSQSTYSRYESGYLDIPSNILIALARFYQVSVDY 80 >gi|125624656|ref|YP_001033139.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124493464|emb|CAL98438.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300071447|gb|ADJ60847.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 85 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R+ +G++Q +L E L + Q V +EKG L+ ++ + + Sbjct: 28 NIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNIETLKALATLFNISVD 81 >gi|21223466|ref|NP_629245.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256785428|ref|ZP_05523859.1| DNA-binding protein [Streptomyces lividans TK24] gi|5541920|emb|CAB51134.1| hypothetical protein [Streptomyces coelicolor A3(2)] gi|14717102|emb|CAC44208.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 190 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G++ L G++ + + E G R L ++ + + P+ Sbjct: 12 VGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDL 70 >gi|108804104|ref|YP_644041.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765347|gb|ABG04229.1| transcriptional regulator, XRE family with cupin sensor [Rubrobacter xylanophilus DSM 9941] Length = 203 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+R+R+ R G++ E L G++ + K E+G ++E L +S Sbjct: 15 RRVGERVRMLRRERGLTLEGLAGRSGVSRAMISKVERGEKVPTLVVAARLAEGLGVSLS 73 >gi|322516911|ref|ZP_08069808.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124534|gb|EFX96016.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 158 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|294499063|ref|YP_003562763.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294349000|gb|ADE69329.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 297 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+ I+ R I M+ +L + + T +++ ++E+G + L H+S+ L P+++ Sbjct: 5 KQVGQLIQDLRKIAEMTTVELSKGI-CTEEELHRFEQGEIHASSEVLYHLSKRLGVPMNY 63 Query: 73 FFDVSPTVCSDISSE 87 FF+ +D S E Sbjct: 64 FFEAGELTPNDYSKE 78 >gi|268611917|ref|ZP_06145644.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 102 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G S KL + G++ + EK +N+ LQ + + ++ FF+ Sbjct: 4 GTRLREIRKAKGFSMYKLHKESGLSQGHISDLEKCINQPTIETLQKLLTPMGVTLAEFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPD-----GLQLNRYFIQ 109 V +E+ V F + P+ LQ+ + + Sbjct: 64 EDGEVSILTDTEKELVAGFRTLPEDKADLALQMIKALNR 102 >gi|237751081|ref|ZP_04581561.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229373526|gb|EEO23917.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 222 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++R R+ LG+SQ+K E LG+T + YE N + + L +SE+ +F + Sbjct: 9 EKLRNLRLSLGLSQKKFAEKLGLTRSLIAAYETEKNPISNNVLLRVSEIFGIKNEYF-ES 67 Query: 77 SPTVCSDISSEENNVMDFI 95 T N D + Sbjct: 68 EMTPQEAFEKYSINPADIL 86 >gi|170736559|ref|YP_001777819.1| helix-turn-helix domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818747|gb|ACA93329.1| helix-turn-helix domain protein [Burkholderia cenocepacia MC0-3] Length = 130 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 12/109 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R L M+Q + GE G+ Q YE+G AS L ++E+ + + Sbjct: 14 RLKQERRRLQMNQAEFGEAGGVRKQAQSNYEQGSRIPDASYLTRLAEI-GVDVQYLLTGR 72 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+ ++ + + L F ++ + R+ ++ LV +I Sbjct: 73 PSDPGTLALTGDEEL----------LLAGFRELK-PRERRGVLALVAAI 110 >gi|163737289|ref|ZP_02144707.1| hypothetical protein RGBS107_04063 [Phaeobacter gallaeciensis BS107] gi|161389893|gb|EDQ14244.1| hypothetical protein RGBS107_04063 [Phaeobacter gallaeciensis BS107] Length = 140 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G R+ + R +G++Q + E +G++ + YEKG + L +S+ E ++ Sbjct: 10 IAMGARLAIARNEVGLTQTAMAEAIGVSHRAYHSYEKGQRGLPVEALVAMSDRFEVDAAW 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + TV +S + + I T LN I+I K R I+ Sbjct: 70 ILLGTQTVR---ASHDFEALKQIETSLDQHLNEENIKIKSEK-RGAIVA 114 >gi|118443353|ref|YP_878274.1| transcriptional regulator [Clostridium novyi NT] gi|118133809|gb|ABK60853.1| putative transcriptional regulator [Clostridium novyi NT] Length = 113 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 37/73 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ ++ +L E GI + K E G ++ A LQ +++ L ++ FFD Sbjct: 5 EKLKQLRISRNITTYELSELTGIPQSTISKMENGKRKIEAESLQKLADALNISVNEFFDS 64 Query: 77 SPTVCSDISSEEN 89 S + S +E+ Sbjct: 65 SFKDSTSESFDED 77 >gi|11995223|ref|NP_072081.1| PvuIIC [Proteus vulgaris] gi|455322|gb|AAA96335.1| PvuIIC [Proteus vulgaris] Length = 84 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N P + + K ++ R LG+SQE L + +GI + E+ + ++ Sbjct: 1 MSRNTN-PLSARLTLAKNVKKMRGELGLSQESLADLVGIHRTYIGSIERAERNISIDNIE 59 Query: 61 HISEVLESPIS 71 I+ L IS Sbjct: 60 RIANALNVSIS 70 >gi|56962032|ref|YP_173754.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56908266|dbj|BAD62793.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 145 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR+ R +SQE+L E + ++ Q V K+E + + +S++ + I Sbjct: 2 IGINIRVLRKKHKLSQEQLAEKVNVSRQTVAKWESEEAFPDIFKCKMLSDIFQVTID--- 58 Query: 75 DVSPTVCSDISSEENN 90 + D+S EE N Sbjct: 59 ----QLSRDMSEEEAN 70 >gi|16078316|ref|NP_389133.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221309100|ref|ZP_03590947.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221313427|ref|ZP_03595232.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318350|ref|ZP_03599644.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221322623|ref|ZP_03603917.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|321314993|ref|YP_004207280.1| Phage PBSX transcriptional regulator [Bacillus subtilis BSn5] gi|139821|sp|P23789|XRE_BACSU RecName: Full=HTH-type transcriptional regulator xre; AltName: Full=Putative pbsX repressor gi|143835|gb|AAA22894.1| PBSX repressor [Bacillus subtilis] gi|498812|emb|CAA84042.1| xre [Bacillus subtilis subsp. subtilis str. 168] gi|1225936|emb|CAA94052.1| PBSX repressor [Bacillus subtilis subsp. subtilis str. 168] gi|2633605|emb|CAB13108.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291483768|dbj|BAI84843.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|320021267|gb|ADV96253.1| Phage PBSX transcriptional regulator [Bacillus subtilis BSn5] Length = 113 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 16/120 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 2 IGGRLKSLRGKR--TQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLL 59 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEKK 132 D D S PD LQL + + D + +Q+ IE + + EK Sbjct: 60 TGKDKKSDD---------DMFSDPD-LQL--AYRDMQDFSPESKQQAIEFINYLKEKEKN 107 >gi|327193279|gb|EGE60185.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 220 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 41 VDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPIGL 98 Query: 73 --FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 99 AEFFAFEPERPKKAFYAAEELVEI 122 >gi|258513952|ref|YP_003190174.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257777657|gb|ACV61551.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 71 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R M+Q+ L + +G+ Q + EKG + I ++L + F Sbjct: 6 RIKAARAAKDMTQKDLADAVGVARQTMNAIEKGDYNPSINLCISICKILGKTLDQLF 62 >gi|229074136|ref|ZP_04207183.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18] gi|228709030|gb|EEL61156.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18] Length = 67 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE + LG++ + + E+G + +++ L+ I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSI 61 >gi|210622958|ref|ZP_03293463.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275] gi|210153924|gb|EEA84930.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275] Length = 141 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R G++Q+++ + +G T + +YE A L ++++ + I + Sbjct: 2 VTLGSRLKALRQEKGLTQKEVAKLIGTTDVSIGRYEMDARVPKADILNSLAKLYDVEIDY 61 Query: 73 FFDVSPTVCSDISSEENNVMD 93 ++ + ++ Sbjct: 62 LLTGKEETEQPLNDRDKKDIE 82 >gi|315230325|ref|YP_004070761.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus barophilus MP] gi|315183353|gb|ADT83538.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus barophilus MP] Length = 186 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P P+D + IR R LG++QE+L + G+T + K E G S I E L Sbjct: 5 PRPIDP---REIRRIRKELGITQEELAKRAGVTQAYIAKLESGKVDPRLSTFNRILEAL 60 >gi|62178909|ref|YP_215326.1| regulatory protein Cro (antirepressor) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168239077|ref|ZP_02664135.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734385|ref|YP_002113584.1| hypothetical protein SeSA_A0617 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|224583087|ref|YP_002636885.1| regulatory protein cro (Antirepressor) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126542|gb|AAX64245.1| regulatory protein cro (Antirepressor) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194709887|gb|ACF89108.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288184|gb|EDY27569.1| conserved domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|224467614|gb|ACN45444.1| regulatory protein cro (Antirepressor) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713364|gb|EFZ04935.1| Regulatory protein cro [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 71 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ +R L M+Q +L E G+ Q +Q+ E G + L ++ L+ S+ Sbjct: 4 ISQRLKQKRTELKMTQAQLAEKAGMKQQSIQQIESGETK-RPRFLLELATALQCDPSWL 61 >gi|86134485|ref|ZP_01053067.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85821348|gb|EAQ42495.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 258 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I+ R + ++QE L E L +T ++ YE+ + L S+ + PI Sbjct: 4 LSKNIKHLRNLKKLTQEALAEELSVTRSRISSYEENRSSPTIEFLIDFSKYFKIPIDIII 63 Query: 75 DVSPTVCSDIS 85 T +D+S Sbjct: 64 KNDLTKANDVS 74 >gi|257871213|ref|ZP_05650866.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805377|gb|EEV34199.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 67 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R + +SQ L + +G+ Q + E +++VL++ ++ F Sbjct: 2 NRVREFRQKMNLSQNALAKEIGVARQTINLIENNKYNPSLDLCIKLAKVLQTDLNSLF 59 >gi|237711046|ref|ZP_04541527.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229454890|gb|EEO60611.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 77 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ I R M+Q +L E +G + + E G S I+ L + Sbjct: 17 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASALGLNV 71 >gi|226310383|ref|YP_002770277.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226093331|dbj|BAH41773.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 189 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P V + VG ++ R +S E L E G++ + E+G L Sbjct: 1 MNPETDDPKQVVLQVGGVLKKIRKEKHLSLEDLSELSGVSKLTLGNIERGETNPTIGVLW 60 Query: 61 HISEVLESPISFFFDVSPTV 80 IS+ L P+ F +V Sbjct: 61 KISKCLSIPLLALFSTENSV 80 >gi|220934873|ref|YP_002513772.1| transcriptional regulator, XRE family [Thioalkalivibrio sp. HL-EbGR7] gi|219996183|gb|ACL72785.1| transcriptional regulator, XRE family [Thioalkalivibrio sp. HL-EbGR7] Length = 218 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++G +R +R ++ + + G++ + K E G L+ +S VL + Sbjct: 31 LDQHIGHVLREKRQAQSLTIADVADLAGVSRGMLSKIENGQVSTSLETLRKLSGVLGMTL 90 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + F + + +GL++ R Sbjct: 91 AQLFKNFDVPEGGAQH--------VKSGEGLEVVR 117 >gi|194016262|ref|ZP_03054876.1| transcriptional regulator, Cro/CI family [Bacillus pumilus ATCC 7061] gi|194011735|gb|EDW21303.1| transcriptional regulator, Cro/CI family [Bacillus pumilus ATCC 7061] Length = 79 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ MSQ++L E +G++ Q + EKG I+ + ++ F Sbjct: 9 ISNKVYEYRVLARMSQQELAEKVGVSKQTIFVMEKGNYVPTLLLAFRIANFFKVDVNDIF 68 >gi|168187847|ref|ZP_02622482.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] gi|169294280|gb|EDS76413.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] Length = 64 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G +++++R+ G+ Q+ L + +GI+ + E G N ++ ISE+LE + F Sbjct: 2 GLKLKIKRIEKGIKQKDLAKEIGISRYYLSALENGRANNPSIPVMKKISEILEVTVQELF 61 >gi|190015098|ref|YP_001966668.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|190015364|ref|YP_001966993.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|218848302|ref|YP_002455035.1| transcriptional regulator [Bacillus cereus AH820] gi|116584774|gb|ABK00889.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|116585045|gb|ABK01154.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|218540353|gb|ACK92749.1| transcriptional regulator [Bacillus cereus AH820] Length = 64 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ GM+Q +L + ++ Q + EKG I + L ++ F Sbjct: 4 KVKRIRLEKGMTQGELAKITNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLF 60 >gi|116515960|ref|YP_816408.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148988506|ref|ZP_01819953.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|168491942|ref|ZP_02716085.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|225858871|ref|YP_002740381.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|289167945|ref|YP_003446214.1| transcriptional regulator [Streptococcus mitis B6] gi|116076536|gb|ABJ54256.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147926187|gb|EDK77261.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|183217352|gb|ACC59271.1| antitoxin PezA [Streptococcus pneumoniae] gi|183573821|gb|EDT94349.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|213031122|emb|CAR31459.1| hypothetical protein [Streptococcus pneumoniae] gi|225721666|gb|ACO17520.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|288907512|emb|CBJ22349.1| transcriptional regulator [Streptococcus mitis B6] gi|319412015|emb|CBY91948.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|15599695|ref|NP_253189.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099916|ref|ZP_01363834.1| hypothetical protein PaerPA_01000937 [Pseudomonas aeruginosa PACS2] gi|116052530|ref|YP_792844.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254238841|ref|ZP_04932164.1| hypothetical protein PACG_05007 [Pseudomonas aeruginosa C3719] gi|254244690|ref|ZP_04938012.1| hypothetical protein PA2G_05559 [Pseudomonas aeruginosa 2192] gi|296391210|ref|ZP_06880685.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313107088|ref|ZP_07793288.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9950738|gb|AAG07887.1|AE004863_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587751|gb|ABJ13766.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170772|gb|EAZ56283.1| hypothetical protein PACG_05007 [Pseudomonas aeruginosa C3719] gi|126198068|gb|EAZ62131.1| hypothetical protein PA2G_05559 [Pseudomonas aeruginosa 2192] gi|310879790|gb|EFQ38384.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 187 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 2/99 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+R+R R + ++ G+T + + E+ + V S L +I++ L P+ Sbjct: 3 VDR-IGERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFI 108 + FD D E P + L+ F Sbjct: 62 NALFDQPAQPQPDSHEGERVRYTIEGQPLAYERLSSSFP 100 >gi|328955766|ref|YP_004373099.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456090|gb|AEB07284.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 72 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 7 IPNPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + VD +G RIR R G+SQ +GI E+G + L IS+ Sbjct: 1 MSDSVDQQIGARIRCLRKKRTGLSQNGFACQIGIDRSYFATIEQGKHSATLQMLARISQG 60 Query: 66 LESPISFFFDV 76 L + F+ Sbjct: 61 LGVSLQELFEG 71 >gi|319776281|ref|YP_004138769.1| hypothetical protein HICON_17530 [Haemophilus influenzae F3047] gi|329123426|ref|ZP_08251990.1| DNA-binding protein [Haemophilus aegyptius ATCC 11116] gi|317450872|emb|CBY87097.1| conserved hypothetical protein [Haemophilus influenzae F3047] gi|327471008|gb|EGF16463.1| DNA-binding protein [Haemophilus aegyptius ATCC 11116] Length = 127 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR+ R + +SQE + E + ++ K E+G R+ +L I+++ +S D Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLVDND 65 Query: 78 PTV 80 V Sbjct: 66 KGV 68 >gi|302064024|ref|ZP_07255565.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 120 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +SQ L E +G V +YE+G G +L I+ V Sbjct: 11 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELL 70 Query: 75 DVSPTVCS----DISSEENNVMDFISTPDGLQLNRYFI 108 V + E + + +P+ L+ FI Sbjct: 71 PGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEMLNFI 108 >gi|256617058|ref|ZP_05473904.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256596585|gb|EEU15761.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] Length = 87 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 78 >gi|229821739|ref|YP_002883265.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567652|gb|ACQ81503.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 513 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G IR R G++Q +L E LG + + + E+G + L I+ LE+ + Sbjct: 14 IGALIRGARQNKGLTQAQLAERLGTSQSAIARIEQGSQNLSVELLTRINRALEADL 69 >gi|229815595|ref|ZP_04445922.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM 13280] gi|229808825|gb|EEP44600.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM 13280] Length = 312 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R M+QE L LG+T Q V K+E G + +L + E+ E + Sbjct: 9 YLRDSRNMTQEHLAMLLGVTRQAVSKWEAGASTPDMDKLVRLCEIFEVDLD 59 >gi|183600505|ref|ZP_02961998.1| hypothetical protein PROSTU_04084 [Providencia stuartii ATCC 25827] gi|188019992|gb|EDU58032.1| hypothetical protein PROSTU_04084 [Providencia stuartii ATCC 25827] Length = 89 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R ++ +LG+ L I+ QQ+ +YE+G + L + + L+ S FF Sbjct: 12 IGDFLRAARRGKSLTGLQLGKMLHISQQQISRYERGETSISIETLDVLLKGLDMDWSDFF 71 >gi|38257088|ref|NP_940750.1| hypothetical protein pPI-1p01 [Staphylococcus warneri] gi|38142381|dbj|BAD00985.1| hypothetical protein [Staphylococcus warneri] Length = 203 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +I R ++QE L E +T + +Q+ E G V + L++IS VL+ I+ F+ Sbjct: 4 SKIAKLRKDKSLTQENLAEKACVTVRTIQRIEAGE-EVSSETLKNISNVLDVTINELFE 61 >gi|47568826|ref|ZP_00239520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228983895|ref|ZP_04144089.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154395|ref|ZP_04282515.1| Transcriptional regulator [Bacillus cereus ATCC 4342] gi|229159774|ref|ZP_04287782.1| Transcriptional regulator [Bacillus cereus R309803] gi|229171478|ref|ZP_04299062.1| Transcriptional regulator [Bacillus cereus MM3] gi|47554502|gb|EAL12859.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228612016|gb|EEK69254.1| Transcriptional regulator [Bacillus cereus MM3] gi|228623711|gb|EEK80529.1| Transcriptional regulator [Bacillus cereus R309803] gi|228629219|gb|EEK85926.1| Transcriptional regulator [Bacillus cereus ATCC 4342] gi|228775874|gb|EEM24246.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324324735|gb|ADY19995.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 66 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|325971067|ref|YP_004247258.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324026305|gb|ADY13064.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 107 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 + ++ RR L ++Q +L E +G++ V + E + ++ IS L+ P FF + Sbjct: 13 RNLKERRRKLSLTQAQLAEKIGVSTSFVTEIETSRKAPSFATIEKISAALDVPCWTFFCE 72 Query: 76 VSPTVCSDIS 85 + +D++ Sbjct: 73 DGDKLPNDVT 82 >gi|323975381|gb|EGB70482.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 154 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ G+SQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 60 Query: 67 ESPISFFFDVSPTVCSD 83 P+ +D Sbjct: 61 SVEPWQLLAPGPSEDND 77 >gi|315920969|ref|ZP_07917209.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694844|gb|EFS31679.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 105 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+ I+ R ++QE+LGE +G+ Q+ K E G + + S + + + Sbjct: 37 IGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS-ISFSTIVRAFKAMGV 89 >gi|307710471|ref|ZP_07646908.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307618734|gb|EFN97873.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 158 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R ++Q + + +GI+ + +YE G++ V + I + Sbjct: 2 IGENIKTLRKTHDLTQPEFAKIIGISRNSLSRYENGISSVSTELVDRICKKFNVS 56 >gi|295096872|emb|CBK85962.1| Predicted transcriptional regulator with C-terminal CBS domains [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 70 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR-LQHISEVLESPIS 71 + + R++ RR L M+Q L E G++ Q + + E GV + R L +S L+ + Sbjct: 1 MTLATRLKERRKELKMTQVTLAELTGVSQQAINRIESGV--ISRPRYLLELSVALDCDPN 58 Query: 72 FFFDVS 77 + S Sbjct: 59 WLLHGS 64 >gi|291513608|emb|CBK62818.1| Predicted transcriptional regulator [Alistipes shahii WAL 8301] Length = 223 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++L R LGM+QE+L + LGI + E G + A + + L + Sbjct: 3 ERVKLIRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDWL--- 59 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 T ++ + E ++ ++ D Sbjct: 60 -ETGKGNMFNAEPDLTAYMHRTD 81 >gi|217971592|ref|YP_002356343.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217496727|gb|ACK44920.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 129 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 34/79 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G + +R G+ Q + +C+G++ + E G + +L ++ L P + F Sbjct: 12 LGVVVANKRKEFGIEQSVMADCMGLSQASYSRLESGKSTFSVDQLFECAQALNIPAAELF 71 Query: 75 DVSPTVCSDISSEENNVMD 93 + ++ S + V+ Sbjct: 72 NSVVNTVGNLQSSNDVVVQ 90 >gi|253700937|ref|YP_003022126.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251775787|gb|ACT18368.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 188 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G RI+ R+ ++ + + G + + + E + L I++ + ++ F Sbjct: 6 NIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQF 65 Query: 74 F--DVSPTVCSDISSEENNVMDFISTPDG 100 F D + +++ ++ + + +G Sbjct: 66 FSEDEDNRKFEVVRADQRTIVPRVISKEG 94 >gi|168216107|ref|ZP_02641732.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|182381810|gb|EDT79289.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 348 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 7 IKEKRNAQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKIDLN 59 >gi|75910258|ref|YP_324554.1| molybdate metabolism transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703983|gb|ABA23659.1| transcriptional regulator of molybdate metabolism, XRE family [Anabaena variabilis ATCC 29413] Length = 377 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R LGMSQ+ L +T Q + E G + I++ L + F Sbjct: 9 NNLKAIRTRLGMSQQDLANIASVTRQTISGVESGQYAPSVAIALRIAKALGCQVEDLF 66 >gi|15614006|ref|NP_242309.1| transcriptional regulator [Bacillus halodurans C-125] gi|10174060|dbj|BAB05162.1| transcriptional regulator [Bacillus halodurans C-125] Length = 107 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 +R+R R G++ ++LG+ + + + YE G + L ++E S + Sbjct: 4 ERLRYLRKKHGLTMKELGKKINVAESTISGYENGNRKPDMDTLVKMAEYFNSSTDYLLGR 63 Query: 76 -VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P E+ + T + ++ R Sbjct: 64 TEEPAPYQKQPPEKQFLYSETVTDEEVEFLR 94 >gi|324995252|gb|EGC27164.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] Length = 225 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RRM L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|324990700|gb|EGC22636.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] gi|327458798|gb|EGF05146.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 225 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RRM L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|323126297|gb|ADX23594.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 303 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++R R+ G+S+E+L G+ ++ +Q+ + E G + +++ I++ LE + + Sbjct: 4 HFGEKVRGLRLEKGISREELCGDEAELSVRQLARIELGQSIPSLAKVIFIAKALEVSVGY 63 Query: 73 FFDVS 77 D + Sbjct: 64 LTDGA 68 >gi|307127275|ref|YP_003879306.1| helix-turn-helix domain-containing protein [Streptococcus pneumoniae 670-6B] gi|295980949|emb|CBJ57197.1| putative transcriptional regulator [Streptococcus pneumoniae] gi|306484337|gb|ADM91206.1| helix-turn-helix domain protein [Streptococcus pneumoniae 670-6B] Length = 158 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|262283472|ref|ZP_06061238.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260963|gb|EEY79663.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 170 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDIS-SEENNVMDFISTPDGLQLNRYFIQIDD 112 F S + + S E N D +S ++ + I+D Sbjct: 67 FGTSKEIELEKSVLESNEYSDKVS-----EILKAVKYIED 101 >gi|225406864|ref|ZP_03761053.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] gi|225042620|gb|EEG52866.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR +R G+SQE+L + G++ Q V E + H++ L++ + F Sbjct: 5 IRDKRKQQGLSQEELAKRCGVSRQTVNAIENDKYDPTLALAFHLARELDTRVDELF 60 >gi|218893591|ref|YP_002442460.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218773819|emb|CAW29633.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 187 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 2/99 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+R+R R + ++ G+T + + E+ + V S L +I++ L P+ Sbjct: 3 VDR-IGERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFI 108 + FD D E P + L+ F Sbjct: 62 NALFDQPAQPQPDSHEGERVRYTIEGQPLAYERLSSSFP 100 >gi|210615547|ref|ZP_03290645.1| hypothetical protein CLONEX_02863 [Clostridium nexile DSM 1787] gi|210150214|gb|EEA81223.1| hypothetical protein CLONEX_02863 [Clostridium nexile DSM 1787] Length = 74 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R MSQ++L + +G++ Q + + E+ I++V + I FD Sbjct: 10 SKIHIYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVAIEDLFDF 69 Query: 77 SPTV 80 Sbjct: 70 EEAE 73 >gi|154252274|ref|YP_001413098.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156224|gb|ABS63441.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 117 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 5/86 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + RR LG +Q L +G++ V E G V + +++ L+ F Sbjct: 11 GRAVATRRKELGFTQADLAGRVGMSRASVANIESGRQNVLLHHVYNLASALQ-----FSK 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 VS + + + +D I + + L Sbjct: 66 VSDLLPTQLKPATQEDLDMILSDETL 91 >gi|154500312|ref|ZP_02038350.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] gi|150271044|gb|EDM98318.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] Length = 111 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+R+R RR LG+++EK+ E I + E G +++ L +S + P+ + Sbjct: 7 IDIGQRLRQRRQDLGLTREKMAELADIGTGYYGQLEVGTSQMSIDTLIKLSHSMHLPMEY 66 Query: 73 --FFDVSPTVCSDISSEENNVMDFIS--TPDGLQLNR 105 F D I + + V+D + TP L+L Sbjct: 67 ILFGDGY------IPGDPSAVIDLLHRCTPRELKLAE 97 >gi|104784313|ref|YP_610811.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95113300|emb|CAK18028.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 182 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + P+S Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLS--GIPMSM 58 Query: 73 --FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF +++P + I + + ++D ++L Sbjct: 59 VEFFSVELAPESPTQIVYKAHELIDISDGAVTMKLV 94 >gi|152985673|ref|YP_001350449.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960831|gb|ABR82856.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 187 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 2/99 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+R+R R + ++ G+T + + E+ + V S L +I++ L P+ Sbjct: 3 VDR-IGERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFI 108 + FD D E P + L+ F Sbjct: 62 NALFDQPAQPQPDSHEGERVRYTIEGQPLAYERLSSSFP 100 >gi|126698959|ref|YP_001087856.1| putative phage repressor [Clostridium difficile 630] gi|254974905|ref|ZP_05271377.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255314032|ref|ZP_05355615.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255516712|ref|ZP_05384388.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|260682969|ref|YP_003214254.1| putative phage repressor [Clostridium difficile CD196] gi|260686567|ref|YP_003217700.1| putative phage repressor [Clostridium difficile R20291] gi|306519912|ref|ZP_07406259.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|115250396|emb|CAJ68218.1| Transcriptional regulator, Phage-type [Clostridium difficile] gi|260209132|emb|CBA62325.1| putative phage repressor [Clostridium difficile CD196] gi|260212583|emb|CBE03577.1| putative phage repressor [Clostridium difficile R20291] Length = 106 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFF 73 KR+R R G++Q +LGE +G++ + + YE NR + +++V + + Sbjct: 4 KRLRELRKEFGLTQRELGEKVGVSQRVLGYYET-ENRFPDEHILNKLADVFNVSVDYL 60 >gi|75758833|ref|ZP_00738946.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493674|gb|EAO56777.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 130 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 3/99 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+ +R+ R + G++ ++LG+ LG+ + +E LQ IS Sbjct: 5 YFGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFETLQKISIYFNVSTDRL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + +++E+ + I L + + D Sbjct: 65 LNHKIGDSEALTTEDRKI---IVERLAQDLYESYKNVPD 100 >gi|320334222|ref|YP_004170933.1| XRE family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755511|gb|ADV67268.1| transcriptional regulator, XRE family [Deinococcus maricopensis DSM 21211] Length = 64 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR+ R G +Q L L ++ Q V E G I+ P+ F Sbjct: 3 NRIRVLRTERGWTQADLANHLDVSRQTVNALETGRYDPSLPLAFRIARTFALPLEAIF 60 >gi|313890139|ref|ZP_07823774.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121500|gb|EFR44604.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 168 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ + G++Q +L + + Q KYE G + + +S+ ++ Sbjct: 3 NRLKELQKEKGLTQAELAQVINTNQSQYGKYENGKTNLSLENAKILSDYFGVSPAYL 59 Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--FDVSP 78 +S ++ E GI + + Y +G A +++ + + ++ P Sbjct: 81 KDRKLSLREISEDTGINYSTIGNYNQGTRIPNARNAAILADYFRVSVGYLLGYEKEP 137 >gi|262370916|ref|ZP_06064240.1| DNA methyltransferase [Acinetobacter johnsonii SH046] gi|262314278|gb|EEY95321.1| DNA methyltransferase [Acinetobacter johnsonii SH046] Length = 68 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G ++R +R + +SQE+L I + + E+G V ++ +++ L+ P+ Sbjct: 6 VSFGLKVREQRKLKKLSQERLALLCNIDRSYMGRIERGEVNVTIEKVYELAKALDIPV 63 >gi|237713948|ref|ZP_04544429.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237722888|ref|ZP_04553369.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262409143|ref|ZP_06085687.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647467|ref|ZP_06725050.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294808929|ref|ZP_06767654.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229446104|gb|EEO51895.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229447410|gb|EEO53201.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262352890|gb|EEZ01986.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637177|gb|EFF55612.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294443864|gb|EFG12606.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|295085268|emb|CBK66791.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 157 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 14/140 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ IR R+ M+QE L E + ++ V KYEK + LQ + L P + Sbjct: 11 VHHGRNIRRTRIEKNMNQEGLSELVHLSQPAVSKYEKMKV-IDDEMLQRFARALNVPFDY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ------IDDVKVRQ-----KIIE 121 + E N V + + G ++ ++ I+D +V KI E Sbjct: 70 L-KTLEEDAQTVVFENNTVNNSEQSAGGANISMGIVKSDTEDSINDSRVNNFNPIDKITE 128 Query: 122 LVRSIVSS-EKKYRTIEEEC 140 L ++ ++KY +E Sbjct: 129 LYERLLKEKDEKYAALERRL 148 >gi|160942794|ref|ZP_02090035.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii M21/2] gi|158445959|gb|EDP22962.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii M21/2] Length = 134 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R M+QE + E +G++ Q V K+E G + S L ++ + P Sbjct: 67 LKENRTRCKMTQEFVAETIGVSRQAVSKWENGTSEPNTSNLMALARLYGIPAEDLLKGVE 126 Query: 79 TVCS 82 + Sbjct: 127 SALE 130 >gi|42779243|ref|NP_976490.1| hypothetical protein BCE_0162 [Bacillus cereus ATCC 10987] gi|42735158|gb|AAS39098.1| Unknown-related protein [Bacillus cereus ATCC 10987] Length = 64 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ GM+Q +L + ++ Q + E+G + I + L ++ F Sbjct: 4 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEQGAYNPSLNLCIKICQTLGVTLNDLF 60 >gi|78048175|ref|YP_364350.1| hypothetical protein XCV2619 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036605|emb|CAJ24296.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 91 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 ++ K +P + G R+ R G+SQE+L G+ + E+G + + Sbjct: 7 LMPEKSMPTDPRVLFGLRLAEVRKTKGLSQERLALESGLARSYLGGVERGQRNIALLNIY 66 Query: 61 HISEVLESPISFFFDVSPT 79 ++E L + + Sbjct: 67 RLAEALGVHPTLLLEPPSA 85 >gi|317484462|ref|ZP_07943374.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924286|gb|EFV45460.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 78 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ +R + G+SQ L G + + +Q E G S L I+ L+ + + Sbjct: 8 GDMLKEKRKLRGLSQMGLAMKSGRSLRCIQYLEAGTQEPTLSTLYAIAHALDLRVMDLIE 67 Query: 76 VSPTVCSDI 84 P +D+ Sbjct: 68 ALPEELNDM 76 >gi|312867912|ref|ZP_07728116.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096316|gb|EFQ54556.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 170 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDISSEENN 90 F S + + S E+N Sbjct: 67 FGTSKEIELEKSVLESN 83 >gi|298292090|ref|YP_003694029.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296928601|gb|ADH89410.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 206 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 9/91 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R +S +L E G+ + + E+ + + +S+ L+ I F Sbjct: 23 QLGRTIQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATVWRLSQALDVSIDRF 82 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++++ ++ ++ D L Sbjct: 83 M---------AATDDEPFVEHLTRADTPILL 104 >gi|322418240|ref|YP_004197463.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320124627|gb|ADW12187.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 206 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++ + L + G++ + + E + L I++ L+ I + Sbjct: 19 MKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLKIAKGLKVGIHY 78 Query: 73 FFDVS 77 FF+ + Sbjct: 79 FFEEA 83 >gi|225389143|ref|ZP_03758867.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme DSM 15981] gi|225044801|gb|EEG55047.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme DSM 15981] Length = 73 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R L +SQE+L E +G+T Q + E G + I +VL + F Sbjct: 14 KLKSARAALDLSQEELAEKVGVTRQTIGMIEAGKYNPTLNLCVAICKVLGKTLDDLF 70 >gi|254418818|ref|ZP_05032542.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] gi|196184995|gb|EDX79971.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] Length = 69 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G R++ R G +Q+ L + G++ + + E GV ++ L + + Sbjct: 3 DPRLGSRLKELRTAAGFTQQGLADKAGVSRKTINTVENGVFIPSTIVALDLARALNTTVE 62 Query: 72 FFF 74 F Sbjct: 63 AIF 65 >gi|169333644|ref|ZP_02860837.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis DSM 17244] gi|169259638|gb|EDS73604.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis DSM 17244] Length = 126 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R+ MSQE L E L ++ + K+E ++ I+ + + I Sbjct: 5 EKLKKLRIDNEMSQENLAELLNVSRSAIAKWESSKGMPDLENIKMIAPIFDVTID 59 >gi|160934669|ref|ZP_02082055.1| hypothetical protein CLOLEP_03542 [Clostridium leptum DSM 753] gi|156866122|gb|EDO59494.1| hypothetical protein CLOLEP_03542 [Clostridium leptum DSM 753] Length = 99 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR R G +Q+K+ E LG+ YE G L+ ++ V + D+S Sbjct: 13 KIRQLREKYGYTQKKMSELLGVERSTYTYYETGKTEPSLRVLRKMAVVFHVSTDYLVDMS 72 Query: 78 PTVCSDIS 85 T S Sbjct: 73 DTGNSTTG 80 >gi|148262951|ref|YP_001229657.1| cupin 2 domain-containing protein [Geobacter uraniireducens Rf4] gi|146396451|gb|ABQ25084.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 196 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++ R R ++ ++L E G++ + + E + L I++ L+ I +FF Sbjct: 13 LGEKARKLRQERRLTLQELAELTGLSKPLLSQIENDQVTPPIATLLKIAKGLKVGIHYFF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 + EE + F+ T G Sbjct: 73 E-----------EEGDRQKFVLTRGG 87 >gi|326797649|ref|YP_004315468.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326548413|gb|ADZ76798.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 193 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + I +G +I+ RR G++ ++L + ++ + + E L I + L Sbjct: 1 MKDDILIQIGNQIKERRKNKGITVQELADRASVSKGLISQIENNRVIPSLMVLIEIIKSL 60 Query: 67 ESPISFFF 74 + ++ FF Sbjct: 61 DVDLNIFF 68 >gi|323934035|gb|EGB30492.1| helix-turn-helix protein [Escherichia coli E1520] Length = 154 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ G+SQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 60 Query: 67 ESPISFFFDVSPTVCSD 83 P+ +D Sbjct: 61 SVEPWQLLAPGPSEDND 77 >gi|304440440|ref|ZP_07400329.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371192|gb|EFM24809.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 132 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 6/104 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R +SQ++L + L I+ + +YE V I++ + + Sbjct: 10 NLGSNIKYLREKNNLSQKELAKILNISNSTLSQYESNVRVPSDDIKILIADYFNVSLDYL 69 Query: 74 FD--VSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFIQIDDVK 114 +P + + + DF P+G+ L R ++ + Sbjct: 70 LGRSSNPHKNNKKTKVDELEEDF---PEGISVLYRANQKLTPEQ 110 >gi|295134629|ref|YP_003585305.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294982644|gb|ADF53109.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 144 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL Sbjct: 15 HIGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSEH-IEDEKLEKVAKVLGVS 69 >gi|293373775|ref|ZP_06620121.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298482606|ref|ZP_07000791.1| prophage L54a [Bacteroides sp. D22] gi|292631265|gb|EFF49897.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298271313|gb|EFI12889.1| prophage L54a [Bacteroides sp. D22] Length = 131 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG R+++ RM ++QE++GE L ++ K E G + +RL I+EVL Sbjct: 1 METDLKKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVL 60 Query: 67 ESPISFFFD 75 F+ Sbjct: 61 NMSALELFN 69 >gi|260430343|ref|ZP_05784316.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260418372|gb|EEX11629.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 303 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+R+R R+ GMS E++ +GI+ V ++EKG V L ++E+L + Sbjct: 8 IGQRLRAFRLGSGMSAEEVANRIGISRTAVYRFEKGEV-VKIETLIGLAELLNVSL 62 >gi|254773353|ref|ZP_05214869.1| hypothetical protein MaviaA2_01546 [Mycobacterium avium subsp. avium ATCC 25291] Length = 477 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 5/109 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + L ++E + P +F Sbjct: 10 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYFAP 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDD--VKVRQKIIE 121 S I+ + + +TP + +L I V + +++ + Sbjct: 70 DSDARL--IADLREVLAETPATPGQVEELVARMPAIGQTLVNLHRRLHD 116 >gi|238917692|ref|YP_002931209.1| hypothetical protein EUBELI_01772 [Eubacterium eligens ATCC 27750] gi|238873052|gb|ACR72762.1| Hypothetical protein EUBELI_01772 [Eubacterium eligens ATCC 27750] Length = 98 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNR-VGASRLQHISE 64 N D+ +G I+ R ++Q +L E I+ + K E G ++ + S L I+ Sbjct: 23 NDTDLYRVIGANIKNYREQAKLTQVQLAEQAKISISYLSKIEAAGCDKSLSISVLNQIAN 82 Query: 65 VLESPISFFF 74 VL IS FF Sbjct: 83 VLGVEISEFF 92 >gi|229188198|ref|ZP_04315276.1| hypothetical protein bcere0004_57020 [Bacillus cereus BGSC 6E1] gi|228595274|gb|EEK53016.1| hypothetical protein bcere0004_57020 [Bacillus cereus BGSC 6E1] Length = 68 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R G+SQ KL E ++ Q + E I+ +L+S + F Sbjct: 3 NQIKKFREHKGISQGKLAEMCNVSRQTINAIENNKYDPSLELAFSIAFILDSTVDTLF 60 >gi|193782634|ref|NP_435827.2| hypothetical protein SMa1076 [Sinorhizobium meliloti 1021] gi|193073090|gb|AAK65239.2| conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 194 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ + +L G++ + K E+G L I+ V + FF Sbjct: 15 IGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHFF 74 Query: 75 DVSPTV 80 + Sbjct: 75 NADKEE 80 >gi|170782465|ref|YP_001710798.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157034|emb|CAQ02207.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 107 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R+R +R +G+SQE L E GI + + K E+G + I+ L+ Sbjct: 13 GSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDVDAGLLVT 72 Query: 75 ----DVSPTVCSDISSE 87 D+ P D +E Sbjct: 73 GLTADMLPQDDGDSPAE 89 >gi|167917954|ref|ZP_02505045.1| helix-turn-helix protein [Burkholderia pseudomallei BCC215] Length = 107 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G ++R R G++ EKL E G++ V + E + R A +L +++VL S+F Sbjct: 5 LGAKLRELRKEKGLTLEKLAELAGMSKSYVWELENRESQRPSAEKLTKLADVLGVAASYF 64 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + + +E ++ Sbjct: 65 IEEDVRKPEERHRDEAFFRNY 85 >gi|15678727|ref|NP_275843.1| hypothetical protein MTH700 [Methanothermobacter thermautotrophicus str. Delta H] gi|2621786|gb|AAB85205.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 182 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R + +++E++ + L I + ++YE G + + AS L I+ L + Sbjct: 6 KEIGSRVRELRELSEITEEEMADYLKIDVETYRRYETGEDDIPASILFEIAHRLGVDMGL 65 Query: 73 FFDVSPT 79 T Sbjct: 66 LLTGEET 72 >gi|50121835|ref|YP_051002.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] gi|49612361|emb|CAG75811.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 370 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG--VNRVGASRLQHISEVLESPISFFF 74 +R+ + R G++Q L E G+T + + YEK + + + ++ IS VLE PI FF Sbjct: 5 ERLCIARERRGLTQRALAEAAGLTSKTISNYEKAGIFDAIASDSMERISAVLEYPIEFFL 64 Query: 75 D 75 D Sbjct: 65 D 65 >gi|329728856|gb|EGG65277.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 62 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|319757761|gb|ADV69703.1| transcriptional regulator [Streptococcus suis JS14] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 56 >gi|289168327|ref|YP_003446596.1| hypothetical protein smi_1494 [Streptococcus mitis B6] gi|288907894|emb|CBJ22734.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 71 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ L ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 8 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 64 >gi|229018185|ref|ZP_04175058.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1273] gi|229024368|ref|ZP_04180821.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1272] gi|228736935|gb|EEL87477.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1272] gi|228743110|gb|EEL93237.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1273] Length = 433 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S L+ +S+ L+ + Sbjct: 11 MEIGERIRQVRMHKGLTQGELVSEI-CSVTYLSRIESGKIKPSSSFLKKVSKKLDVDGDY 69 Query: 73 FFDVSPTV 80 + + Sbjct: 70 LIEGNHEE 77 >gi|195937299|ref|ZP_03082681.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4024] Length = 152 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 8 GQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 60 >gi|219847677|ref|YP_002462110.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541936|gb|ACL23674.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 181 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G++ +++ E G+T + + E+ + + L+ +++ ++ Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVKMTH 60 Query: 73 FFDVSP 78 FF+ Sbjct: 61 FFEGED 66 >gi|111220424|ref|YP_711218.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111147956|emb|CAJ59622.1| Putative DNA-binding protein (partial match) [Frankia alni ACN14a] Length = 328 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G IR +R +S +L + G++ + + E+G+ R A LQ I++ L Sbjct: 7 RDLGDFIRDQRRAAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEV 66 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + V + + E+ + ++ Sbjct: 67 LY-VQAGILEERHGGEDVMAAILAD 90 >gi|134294052|ref|YP_001117788.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137209|gb|ABO58323.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 185 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 26/140 (18%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD----VKVRQKIIELVRSIV------- 127 + +++ PD + Y I D +R + L + Sbjct: 74 PRS----------VPWVTRPDERRTVYYAAGITDILVSPNMRSRFSVLESHLAPGANSGE 123 Query: 128 -----SSEKKYRTIEEECMV 142 S E+ +E E + Sbjct: 124 RPVDDSDEQGGFVLEGELTI 143 >gi|145638927|ref|ZP_01794535.1| possible transcriptional regulator [Haemophilus influenzae PittII] gi|145271899|gb|EDK11808.1| possible transcriptional regulator [Haemophilus influenzae PittII] gi|309750896|gb|ADO80880.1| Putative DNA-binding protein [Haemophilus influenzae R2866] Length = 127 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR+ R + +SQE + E + ++ K E+G R+ +L I+++ +S D Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLVDND 65 Query: 78 PTV 80 V Sbjct: 66 KGV 68 >gi|324992265|gb|EGC24187.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] Length = 169 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + Sbjct: 7 NFGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQL 66 Query: 74 FDVSPTVCSDISSEENN 90 F S + + S E+N Sbjct: 67 FGTSKEIELEKSVLESN 83 >gi|308179156|ref|YP_003918562.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307746619|emb|CBT77591.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 163 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI R + G +QE+L GIT + VQ+ E G N + +++ L+ + F Sbjct: 4 SRIAELRRVKGWTQERLATESGITVRTVQRLEAG-NDASLETISLVAKALDVQVGDLF 60 >gi|312913769|dbj|BAJ37743.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 104 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL 66 + I +GKR+++ R+ ++Q +LG G+ ++ YEK V+ + ++ L Sbjct: 6 IAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAAL 65 Query: 67 ESPISFFFDVSPTVCS 82 + P ++F+ V + Sbjct: 66 DVPEAYFYAVDDELAE 81 >gi|167746452|ref|ZP_02418579.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] gi|167653412|gb|EDR97541.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] Length = 171 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I L R G++Q +LGE +G+T + V ++E G + + + E E I+ Sbjct: 21 IGAFIALLRRERGITQAELGERIGVTNKTVSRWENGNYMPDIATMLSLCEEFEISINELL 80 Query: 75 DVSPTVCSDISSEEN-NVMDFI 95 + + + NV+D + Sbjct: 81 SGQRLGSDEFRKKADENVVDSL 102 >gi|167590249|ref|ZP_02382637.1| putative transcription regulator protein [Burkholderia ubonensis Bu] Length = 217 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 4 NKKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P D+N + +R+R R G + + L G++ + E+G A L Sbjct: 6 STDAPADSDVNERIARRVRALRATRGHTLDALAARSGVSRSMISLIERGAASPTAVVLDK 65 Query: 62 ISEVLESPISFFFDVSPTVCS 82 ++ L ++ FD +P Sbjct: 66 LAAGLGVSLASLFDGAPDDAP 86 >gi|163737915|ref|ZP_02145331.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter gallaeciensis BS107] gi|161388531|gb|EDQ12884.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter gallaeciensis BS107] Length = 188 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S E + G++ V + E+G + + L +++ L+ + D Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLDS 73 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 + S + +V + +G Sbjct: 74 NEAQDSIEILRDGDVPSIENMGEG 97 >gi|281356298|ref|ZP_06242790.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281316990|gb|EFB01012.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 193 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G RI++ R M+ + L + G+T + K E L I+ LE+ ++ Sbjct: 6 IALGTRIKMARKERKMTLQTLADRTGLTAGLLSKIENFRTIPSLPVLVDIAAALETDLAE 65 Query: 73 FF 74 FF Sbjct: 66 FF 67 >gi|73663641|ref|YP_302422.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496156|dbj|BAE19477.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 117 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G + + +R SQ++L E L I+ Q + K+E L +S++ + + Sbjct: 1 MEIGSKTKEKREQKHWSQDELAEILNISRQSISKWELNKVYPSIDMLIKMSDLFDISLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 I + + + G+ Sbjct: 61 LIKGDKQFKKTIIETYQDPVSYHHQKRGM 89 >gi|11499382|ref|NP_070621.1| repressor protein [Archaeoglobus fulgidus DSM 4304] gi|3219980|sp|O28481|Y1793_ARCFU RecName: Full=Uncharacterized HTH-type transcriptional regulator AF_1793 gi|2648767|gb|AAB89470.1| repressor protein [Archaeoglobus fulgidus DSM 4304] Length = 70 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R GM+QE+L + +G+ + + EKG I+ V + I F Sbjct: 4 RIREFRAKYGMTQEELAKKVGVRRETIVFLEKGKYNPSLRLAYKIARVFNARIEDLFIFD 63 Query: 78 PTV 80 Sbjct: 64 DEE 66 >gi|53716572|ref|YP_105616.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53722368|ref|YP_111353.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642241|ref|ZP_00441000.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|76818883|ref|YP_335523.1| transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121597603|ref|YP_990060.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381912|ref|YP_001024022.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126445750|ref|YP_001078595.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|126456449|ref|YP_001075854.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|166999565|ref|ZP_02265402.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167742899|ref|ZP_02415673.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 14] gi|167828452|ref|ZP_02459923.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 9] gi|167849906|ref|ZP_02475414.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] gi|167898508|ref|ZP_02485909.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 7894] gi|167906857|ref|ZP_02494062.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei NCTC 13177] gi|167915218|ref|ZP_02502309.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] gi|167923046|ref|ZP_02510137.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] gi|217418478|ref|ZP_03449985.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226198499|ref|ZP_03794066.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|242312902|ref|ZP_04811919.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254173994|ref|ZP_04880657.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254183723|ref|ZP_04890315.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254191201|ref|ZP_04897706.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254193556|ref|ZP_04899990.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254200408|ref|ZP_04906773.1| DNA-binding protein [Burkholderia mallei FMH] gi|254204434|ref|ZP_04910787.1| DNA-binding protein [Burkholderia mallei JHU] gi|254265606|ref|ZP_04956471.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|254356660|ref|ZP_04972935.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52212782|emb|CAH38814.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422542|gb|AAU46112.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|76583356|gb|ABA52830.1| possible transcriptional regulator, XRE family, CUPIN domain [Burkholderia pseudomallei 1710b] gi|121225401|gb|ABM48932.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124289932|gb|ABM99201.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126230217|gb|ABN93630.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|126238604|gb|ABO01716.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147748020|gb|EDK55095.1| DNA-binding protein [Burkholderia mallei FMH] gi|147754020|gb|EDK61084.1| DNA-binding protein [Burkholderia mallei JHU] gi|148025687|gb|EDK83810.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157938874|gb|EDO94544.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160695041|gb|EDP85011.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169650309|gb|EDS83002.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184214256|gb|EDU11299.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217397782|gb|EEC37797.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225929422|gb|EEH25442.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|238523345|gb|EEP86784.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242136141|gb|EES22544.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|243064397|gb|EES46583.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254216608|gb|EET05993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 94 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIA 64 >gi|329917226|ref|ZP_08276450.1| Transcriptional regulator, MerR family [Oxalobacteraceae bacterium IMCC9480] gi|327544593|gb|EGF30073.1| Transcriptional regulator, MerR family [Oxalobacteraceae bacterium IMCC9480] Length = 198 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R++ G++ +L + G + + K E+ + + L ++ L++ I Sbjct: 23 LGLRLRHARLVAGLTLLQLAQKAGCSESLISKIERSLATPSLTMLHRLAVALDTNIGILT 82 Query: 75 DVS-PTVCSDISSEENNVMDFISTPDGLQLNR 105 P I +E V+ G+ L R Sbjct: 83 STDGPPDSPIIRHDERPVL----KAGGIALER 110 >gi|323963980|gb|EGB59472.1| helix-turn-helix protein [Escherichia coli M863] gi|327254078|gb|EGE65707.1| helix-turn-helix family protein [Escherichia coli STEC_7v] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|323490759|ref|ZP_08095961.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323395641|gb|EGA88485.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 172 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R ++ ++L E ++ + + E+G + V L+ I++ L S FF Sbjct: 6 IGVTLKSLRKERKLTLKELAEQTNVSISFLSQVERGKSSVTLESLRKIADALNVDPSLFF 65 >gi|322714235|gb|EFZ05806.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 231 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M +L E +G+ + + E G + L +++ L I+ Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIA 60 Query: 72 FFFDVSPTVC-----SDISSEENNVMDFIS 96 F SD+ + NV D Sbjct: 61 ELFTSDSKGNTVCKHSDMRKDSANVKDLFR 90 >gi|313677569|ref|YP_004055565.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944267|gb|ADR23457.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 171 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS----FFFD 75 R+ G+SQ+KL + LGI+ QQVQ+ E N ++ A +LQ IS+ L I F Sbjct: 81 KARIASGVSQKKLADQLGISPQQVQRNETNDNQQLSAKKLQGISDALGLEIEISKIVFLK 140 Query: 76 VSPTVCSDISSEENNVMD 93 P+ + E N+ + Sbjct: 141 NQPSFLAPDELGEANIQE 158 >gi|309701701|emb|CBJ01009.1| putative transcriptional regulator [Escherichia coli ETEC H10407] gi|323937517|gb|EGB33787.1| helix-turn-helix protein [Escherichia coli E1520] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|306813594|ref|ZP_07447777.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|305853041|gb|EFM53485.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|300939145|ref|ZP_07153832.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300455960|gb|EFK19453.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|301017870|ref|ZP_07182512.1| helix-turn-helix protein [Escherichia coli MS 69-1] gi|300399967|gb|EFJ83505.1| helix-turn-helix protein [Escherichia coli MS 69-1] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|295132275|ref|YP_003582951.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294980290|gb|ADF50755.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 140 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL Sbjct: 15 HIGRKISRIRELRGMKQEALAAELGISRQSVSSLEQSEH-IEDEKLEKVAKVLGVS 69 >gi|293409776|ref|ZP_06653352.1| conserved hypothetical protein [Escherichia coli B354] gi|291470244|gb|EFF12728.1| conserved hypothetical protein [Escherichia coli B354] gi|323976926|gb|EGB72013.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|284921317|emb|CBG34385.1| putative transcriptional regulator [Escherichia coli 042] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|270157680|ref|ZP_06186337.1| putative phage repressor [Legionella longbeachae D-4968] gi|269989705|gb|EEZ95959.1| putative phage repressor [Legionella longbeachae D-4968] Length = 228 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R G++++ L E + ++ YE+G G + ++ ++E LE +F Sbjct: 9 IGNRIKNERTAKGLTRKALAELTESLKVSRINNYERGERTPGPNEIKQLAEALEVSPAFL 68 Query: 74 FDVSPTVCSDISSEEN 89 +S + Sbjct: 69 MCLSDDRQGKLKQAPG 84 >gi|269838045|ref|YP_003320273.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787308|gb|ACZ39451.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 131 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 33/90 (36%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + V +G IR R G+S L E GI+ + + EKG + + L Sbjct: 6 SERRPTSSEVRQRIGPAIRRLRQQQGLSLSDLAERTGISVSYLSRLEKGRSVPSFTLLSR 65 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNV 91 + L I FF + + E + Sbjct: 66 LGNELGVDIGFFVETEREAQDVDRALEEEL 95 >gi|227551856|ref|ZP_03981905.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257895552|ref|ZP_05675205.1| repressor protein [Enterococcus faecium Com12] gi|293568950|ref|ZP_06680263.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|294619352|ref|ZP_06698816.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] gi|227179028|gb|EEI60000.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257832117|gb|EEV58538.1| repressor protein [Enterococcus faecium Com12] gi|291588383|gb|EFF20218.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|291594401|gb|EFF25814.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] Length = 123 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R G +Q +L + + ++ Q + +E G + L ++ + + Sbjct: 5 RIKELRKQHGWTQAELAKKMSVSQQTIGSWEVGRAEPNSEALTKLAHLFNVSTDYL 60 >gi|220930159|ref|YP_002507068.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000487|gb|ACL77088.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 133 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +RI+ R + G SQ+++ E LG + + + KYE G + S+ + Sbjct: 6 ERIKSLRNVKGQSQKEVAEALGKSREAISKYELGEREPDPDVIVQFSQHFNVSSDY 61 >gi|219853774|ref|YP_002470896.1| hypothetical protein CKR_0431 [Clostridium kluyveri NBRC 12016] gi|219567498|dbj|BAH05482.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 69 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R QE L LG+T Q + E ++ +L + + F+ Sbjct: 9 IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLFEPD 67 >gi|218553960|ref|YP_002386873.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|256018347|ref|ZP_05432212.1| putative DNA-binding transcriptional regulator [Shigella sp. D9] gi|300901847|ref|ZP_07119882.1| helix-turn-helix protein [Escherichia coli MS 84-1] gi|301306843|ref|ZP_07212892.1| helix-turn-helix protein [Escherichia coli MS 124-1] gi|332279399|ref|ZP_08391812.1| conserved hypothetical protein [Shigella sp. D9] gi|218360728|emb|CAQ98289.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|300406059|gb|EFJ89597.1| helix-turn-helix protein [Escherichia coli MS 84-1] gi|300837928|gb|EFK65688.1| helix-turn-helix protein [Escherichia coli MS 124-1] gi|315253499|gb|EFU33467.1| helix-turn-helix protein [Escherichia coli MS 85-1] gi|332101751|gb|EGJ05097.1| conserved hypothetical protein [Shigella sp. D9] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|210614614|ref|ZP_03290233.1| hypothetical protein CLONEX_02447 [Clostridium nexile DSM 1787] gi|210150661|gb|EEA81670.1| hypothetical protein CLONEX_02447 [Clostridium nexile DSM 1787] gi|295108107|emb|CBL22060.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 74 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R MSQ++L + +G++ Q + + E+ I++V + I FD Sbjct: 10 SKIHIYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVAIEDLFDF 69 Query: 77 SPTV 80 Sbjct: 70 EEAQ 73 >gi|209918706|ref|YP_002292790.1| hypothetical protein ECSE_1515 [Escherichia coli SE11] gi|209911965|dbj|BAG77039.1| conserved hypothetical protein [Escherichia coli SE11] gi|324021052|gb|EGB90271.1| helix-turn-helix protein [Escherichia coli MS 117-3] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|170680755|ref|YP_001743794.1| DNA-binding protein [Escherichia coli SMS-3-5] gi|170518473|gb|ACB16651.1| DNA-binding protein [Escherichia coli SMS-3-5] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|160944191|ref|ZP_02091420.1| hypothetical protein FAEPRAM212_01700 [Faecalibacterium prausnitzii M21/2] gi|158444373|gb|EDP21377.1| hypothetical protein FAEPRAM212_01700 [Faecalibacterium prausnitzii M21/2] Length = 219 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 ++ R + G+SQ +L ++ + +Q+YE K +N+ A L ++ L + Sbjct: 151 NLKAMRTLAGLSQSELAGQADVSVRTIQQYEQRQKNINKAQAETLLRLARALNCNVEDLM 210 Query: 75 DVSPT 79 + P Sbjct: 211 EKVPP 215 >gi|15804867|ref|NP_290908.1| hypothetical protein Z5888 [Escherichia coli O157:H7 EDL933] gi|15834506|ref|NP_313279.1| transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187775901|ref|ZP_02799013.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188024876|ref|ZP_02774577.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|189010535|ref|ZP_02807807.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189402054|ref|ZP_02779862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189402821|ref|ZP_02791571.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189403845|ref|ZP_02785537.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189405572|ref|ZP_02822862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208808264|ref|ZP_03250601.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208813993|ref|ZP_03255322.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208819818|ref|ZP_03260138.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396646|ref|YP_002273817.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217326404|ref|ZP_03442488.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254796292|ref|YP_003081129.1| hypothetical protein ECSP_5374 [Escherichia coli O157:H7 str. TW14359] gi|12519290|gb|AAG59474.1|AE005659_9 hypothetical protein Z5888 [Escherichia coli O157:H7 str. EDL933] gi|13364730|dbj|BAB38675.1| putative transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187770260|gb|EDU34104.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188016183|gb|EDU54305.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|188999764|gb|EDU68750.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189357829|gb|EDU76248.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189364128|gb|EDU82547.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189368948|gb|EDU87364.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189379428|gb|EDU97844.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208728065|gb|EDZ77666.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208735270|gb|EDZ83957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208739941|gb|EDZ87623.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158046|gb|ACI35479.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217322625|gb|EEC31049.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254595692|gb|ACT75053.1| predicted protein [Escherichia coli O157:H7 str. TW14359] gi|320190592|gb|EFW65242.1| putative transcription regulator [Escherichia coli O157:H7 str. EC1212] gi|326345394|gb|EGD69137.1| putative transcription regulator [Escherichia coli O157:H7 str. 1125] gi|326346751|gb|EGD70485.1| putative transcription regulator [Escherichia coli O157:H7 str. 1044] Length = 154 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 10 GQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 62 >gi|194431949|ref|ZP_03064239.1| DNA-binding protein [Shigella dysenteriae 1012] gi|331682878|ref|ZP_08383497.1| putative oxidoreductase/putative repressor [Escherichia coli H299] gi|194419857|gb|EDX35936.1| DNA-binding protein [Shigella dysenteriae 1012] gi|320182531|gb|EFW57422.1| Transcriptional regulator yidN, Cro/CI family [Shigella boydii ATCC 9905] gi|331080509|gb|EGI51688.1| putative oxidoreductase/putative repressor [Escherichia coli H299] gi|332094663|gb|EGI99708.1| helix-turn-helix family protein [Shigella dysenteriae 155-74] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|188494052|ref|ZP_03001322.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|331652693|ref|ZP_08353704.1| putative oxidoreductase/putative repressor [Escherichia coli M718] gi|331662905|ref|ZP_08363815.1| putative oxidoreductase/putative repressor [Escherichia coli TA143] gi|188489251|gb|EDU64354.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|331049799|gb|EGI21865.1| putative oxidoreductase/putative repressor [Escherichia coli M718] gi|331058704|gb|EGI30681.1| putative oxidoreductase/putative repressor [Escherichia coli TA143] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|16129393|ref|NP_415951.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|89108277|ref|AP_002057.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|157157044|ref|YP_001462706.1| DNA-binding protein [Escherichia coli E24377A] gi|157160911|ref|YP_001458229.1| DNA-binding protein [Escherichia coli HS] gi|170020236|ref|YP_001725190.1| XRE family transcriptional regulator [Escherichia coli ATCC 8739] gi|170081108|ref|YP_001730428.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|191164983|ref|ZP_03026827.1| DNA-binding protein [Escherichia coli B7A] gi|193066983|ref|ZP_03047952.1| DNA-binding protein [Escherichia coli E110019] gi|194436585|ref|ZP_03068686.1| DNA-binding protein [Escherichia coli 101-1] gi|238900660|ref|YP_002926456.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253773591|ref|YP_003036422.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161493|ref|YP_003044601.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|256022888|ref|ZP_05436753.1| predicted DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|260855159|ref|YP_003229050.1| putative DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|260867878|ref|YP_003234280.1| putative DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|293433816|ref|ZP_06662244.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088] gi|297521909|ref|ZP_06940295.1| putative DNA-binding transcriptional regulator [Escherichia coli OP50] gi|300921799|ref|ZP_07137960.1| helix-turn-helix protein [Escherichia coli MS 182-1] gi|300928985|ref|ZP_07144486.1| helix-turn-helix protein [Escherichia coli MS 187-1] gi|300948113|ref|ZP_07162247.1| helix-turn-helix protein [Escherichia coli MS 116-1] gi|300958230|ref|ZP_07170381.1| helix-turn-helix protein [Escherichia coli MS 175-1] gi|301020147|ref|ZP_07184274.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|301326006|ref|ZP_07219420.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|301645375|ref|ZP_07245319.1| helix-turn-helix protein [Escherichia coli MS 146-1] gi|307138086|ref|ZP_07497442.1| putative DNA-binding transcriptional regulator [Escherichia coli H736] gi|307309783|ref|ZP_07589433.1| transcriptional regulator, XRE family [Escherichia coli W] gi|309794168|ref|ZP_07688592.1| helix-turn-helix protein [Escherichia coli MS 145-7] gi|312971601|ref|ZP_07785776.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|331642010|ref|ZP_08343145.1| putative oxidoreductase/putative repressor [Escherichia coli H736] gi|2829660|sp|P77626|YDCN_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator ydcN gi|1742340|dbj|BAA15062.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|1787704|gb|AAC74516.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|157066591|gb|ABV05846.1| DNA-binding protein [Escherichia coli HS] gi|157079074|gb|ABV18782.1| DNA-binding protein [Escherichia coli E24377A] gi|169755164|gb|ACA77863.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169888943|gb|ACB02650.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|190904755|gb|EDV64460.1| DNA-binding protein [Escherichia coli B7A] gi|192959573|gb|EDV90007.1| DNA-binding protein [Escherichia coli E110019] gi|194424617|gb|EDX40603.1| DNA-binding protein [Escherichia coli 101-1] gi|238862307|gb|ACR64305.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242377187|emb|CAQ31919.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|253324635|gb|ACT29237.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973394|gb|ACT39065.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977605|gb|ACT43275.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|257753808|dbj|BAI25310.1| predicted DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|257764234|dbj|BAI35729.1| predicted DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|260449440|gb|ACX39862.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|291324635|gb|EFE64057.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088] gi|299881904|gb|EFI90115.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|300315108|gb|EFJ64892.1| helix-turn-helix protein [Escherichia coli MS 175-1] gi|300421824|gb|EFK05135.1| helix-turn-helix protein [Escherichia coli MS 182-1] gi|300452356|gb|EFK15976.1| helix-turn-helix protein [Escherichia coli MS 116-1] gi|300463050|gb|EFK26543.1| helix-turn-helix protein [Escherichia coli MS 187-1] gi|300847223|gb|EFK74983.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|301076329|gb|EFK91135.1| helix-turn-helix protein [Escherichia coli MS 146-1] gi|306909501|gb|EFN39995.1| transcriptional regulator, XRE family [Escherichia coli W] gi|308122073|gb|EFO59335.1| helix-turn-helix protein [Escherichia coli MS 145-7] gi|310336198|gb|EFQ01398.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|315060712|gb|ADT75039.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|315136074|dbj|BAJ43233.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] gi|315619613|gb|EFV00138.1| helix-turn-helix family protein [Escherichia coli 3431] gi|320187371|gb|EFW62064.1| Transcriptional regulator yidN, Cro/CI family [Shigella flexneri CDC 796-83] gi|320199440|gb|EFW74031.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli EC4100B] gi|323157392|gb|EFZ43506.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|323178085|gb|EFZ63664.1| helix-turn-helix family protein [Escherichia coli 1180] gi|323185431|gb|EFZ70792.1| helix-turn-helix family protein [Escherichia coli 1357] gi|323378722|gb|ADX50990.1| transcriptional regulator, XRE family [Escherichia coli KO11] gi|323942192|gb|EGB38365.1| helix-turn-helix protein [Escherichia coli E482] gi|323947787|gb|EGB43789.1| helix-turn-helix protein [Escherichia coli H120] gi|323962367|gb|EGB57953.1| helix-turn-helix protein [Escherichia coli H489] gi|323973651|gb|EGB68830.1| helix-turn-helix protein [Escherichia coli TA007] gi|324117665|gb|EGC11569.1| helix-turn-helix protein [Escherichia coli E1167] gi|331038808|gb|EGI11028.1| putative oxidoreductase/putative repressor [Escherichia coli H736] gi|332343099|gb|AEE56433.1| helix-turn-helix family protein YdcN [Escherichia coli UMNK88] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|317488770|ref|ZP_07947304.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] gi|316912140|gb|EFV33715.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] Length = 124 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 7/92 (7%) Query: 5 KKIPNPVDINV-------GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 K P D V G+ +R R G++QE+LG +G ++ E+G Sbjct: 7 KNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVP 66 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEEN 89 + + LE+ D + SD + Sbjct: 67 DMIKLCRALEADPVELVDTAAFKLSDFPERQQ 98 >gi|307324538|ref|ZP_07603745.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889782|gb|EFN20761.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 410 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLES 68 D++VGKR+ R I ++QE+L + G++ +++ E+G R + Q ++ L+ Sbjct: 3 DLSVGKRLARLRDIRDLTQEQLADRAGVSVDTIRRLEQGTQRGARIATYQKLAGALDI 60 >gi|291556294|emb|CBL33411.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 380 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+ ++ R+ ++QE+L + L ++ Q V ++E G + L I+ E + Sbjct: 16 LGENLKKFRLQRELTQEQLADVLSVSAQAVSRWENGTTYPDITLLPTIASYFEITLD 72 >gi|268610992|ref|ZP_06144719.1| putative transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 120 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 + G++++ R+ MSQE+L + G+ + + +YE G +++ +SE ++ I Sbjct: 1 MEFGEKLKQIRIASHMSQEQLADITGLERKTIARYEMGETVPRYNKVYEKLSEFFKTSID 60 Query: 72 FFFDVSPTVCSDISS 86 F+ + +P ++ Sbjct: 61 FWKNDNPDDFQQTAA 75 >gi|291087267|ref|ZP_06345889.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075621|gb|EFE12985.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 159 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFFFD 75 +R++ +R ++Q +L E G+T + +Q YE G + +Q I++ L + + Sbjct: 26 ERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTEYLLG 85 Query: 76 VSPTVCSDI 84 S T + Sbjct: 86 SSGTYVVEA 94 >gi|225378523|ref|ZP_03755744.1| hypothetical protein ROSEINA2194_04191 [Roseburia inulinivorans DSM 16841] gi|257438006|ref|ZP_05613761.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|225209626|gb|EEG91980.1| hypothetical protein ROSEINA2194_04191 [Roseburia inulinivorans DSM 16841] gi|257199666|gb|EEU97950.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 159 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFFFD 75 +R++ +R ++Q +L E G+T + +Q YE G + +Q I++ L + + Sbjct: 26 ERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTEYLLG 85 Query: 76 VSPTVCSDI 84 S T + Sbjct: 86 SSGTYVVEA 94 >gi|219852278|ref|YP_002466710.1| XRE family transcriptional regulator [Methanosphaerula palustris E1-9c] gi|219546537|gb|ACL16987.1| transcriptional regulator, XRE family [Methanosphaerula palustris E1-9c] Length = 72 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R + ++QE LG +G+ Q + EKG I+ I F Sbjct: 3 NKIKVFRAMNDLTQENLGVAIGVNRQTILAIEKGKYVPSLDLAFKIARYFGVNIEDMFIY 62 Query: 77 SPTVCSDISS 86 +++ Sbjct: 63 EEENSINLAH 72 >gi|167747596|ref|ZP_02419723.1| hypothetical protein ANACAC_02317 [Anaerostipes caccae DSM 14662] gi|239625078|ref|ZP_04668109.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652958|gb|EDR97087.1| hypothetical protein ANACAC_02317 [Anaerostipes caccae DSM 14662] gi|239521464|gb|EEQ61330.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 113 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 10 PVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VD G ++R +R +S ++L E + +++ E G S L I +VL + Sbjct: 5 DVDPKEFGAKLRGKRKECKLSYQELAERCHVNHGYIRQLEAGNKLPSVSLLFIICDVLGT 64 Query: 69 PISFFF 74 ++ F Sbjct: 65 SPNYLF 70 >gi|167036306|ref|YP_001671537.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166862794|gb|ABZ01202.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 182 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + P+S Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLS--GIPMSM 58 Query: 73 --FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ P + I + + ++D ++L Sbjct: 59 VEFFSVELEPESPTQIVYKAHELIDISDGAVTMKLV 94 >gi|88855827|ref|ZP_01130490.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] gi|88815151|gb|EAR25010.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] Length = 201 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 13/104 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R++ R ++ ++L E G++ + V E+G L +SE L + Sbjct: 10 RTIGARVKNERQARKLTLDQLAENAGVSRRMVINVEQGAANPSVGTLLRLSEALGVSLPA 69 Query: 73 FFDVSPTVCSDIS----------SEENNVMDFIST---PDGLQL 103 + + ++ E +S+ P+ L+L Sbjct: 70 LVEPPTAQKAKVTRAGAGAALWAGENGGRGILMSSSNIPEALEL 113 >gi|150389852|ref|YP_001319901.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949714|gb|ABR48242.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 64 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R+ +QE L +G+T Q + E G I++ L ++ F Sbjct: 4 SRMKVARVEKDFTQEDLANIVGVTRQTISLIEGGKYNPSIKLCIEIAKALNKTLNDLF 61 >gi|302527873|ref|ZP_07280215.1| DNA-binding protein [Streptomyces sp. AA4] gi|302436768|gb|EFL08584.1| DNA-binding protein [Streptomyces sp. AA4] Length = 226 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 1 MVGNKKIPN-----PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 ++ ++PN P+DI + +R R G+S ++ G+ + + E G Sbjct: 34 LMERTQMPNESTGAPLDI-IAASLRRERARAGLSLTEVARRAGLAKSTLSQLESGAGNPS 92 Query: 56 ASRLQHISEVLESPISFFFD 75 L + L+ P S + Sbjct: 93 VETLWALGVALDVPFSRLVE 112 >gi|295107365|emb|CBL04908.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 289 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R + MSQ L + +G++ Q V K+E + +L I ++ + Sbjct: 22 NLQHLRDLQDMSQADLAQRIGVSRQSVAKWEAEKSYPEMDKLIKICDLFGCSLDDLVRGD 81 Query: 78 PTVCSDISSEENNV 91 S+E ++ Sbjct: 82 LAGREAASAEPSSA 95 >gi|257877340|ref|ZP_05656993.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811506|gb|EEV40326.1| predicted protein [Enterococcus casseliflavus EC20] Length = 263 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R ++QE+L + +T Q + K+E G + ++ +S E + + Sbjct: 1 MDIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSSYFELTLDY 60 Query: 73 FFDVSPTVCSDI 84 + ++ Sbjct: 61 LLKEDQQMVQEL 72 >gi|255524793|ref|ZP_05391744.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185021|ref|ZP_06853432.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255511566|gb|EET87855.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296050803|gb|EFG90226.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPI 70 +G++I+ R++ G SQ +L LG++ +Q ++ YE ++++ Sbjct: 33 IGEKIKYHRLLNGWSQFQLASKLGLSKKQGRYLIKDYETRRLCPPPELSLKLAKIFRIDT 92 Query: 71 SFFFD 75 +F+D Sbjct: 93 KYFYD 97 >gi|227509901|ref|ZP_03939950.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512835|ref|ZP_03942884.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227083835|gb|EEI19147.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227190621|gb|EEI70688.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 78 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ L E +G+ Q + E + I++VL + ++ F Sbjct: 13 NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLF 70 >gi|145594859|ref|YP_001159156.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145304196|gb|ABP54778.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 203 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 4 NKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N K+ + + VG + R GMS L I+ + E+G S L + Sbjct: 17 NTKVVHMDLARTVGSNVHRLRNTAGMSLADLATAGDISKTTLHGIEQGHGNPTLSTLWAL 76 Query: 63 SEVLESPISFFFDVSPTVCSDISSEEN 89 + L P+ + PT +D+ ++ Sbjct: 77 ATALRVPLGELLET-PTPRTDVVRADD 102 >gi|83944721|ref|ZP_00957087.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83851503|gb|EAP89358.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 75 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+SQ L + +G+ + E+G V L H++E L+ + D Sbjct: 8 GANLQYFREKAGLSQAALADRMGVDRAHISAMERGQQNVTIITLWHVAEALDVKPAELLD 67 Query: 76 V 76 Sbjct: 68 D 68 >gi|312864220|ref|ZP_07724454.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100221|gb|EFQ58430.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 187 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RI+ R+ LG S E+ G + V +EKG N L+ I+ + +P+S Sbjct: 7 KQVGARIKDIRLSLGESMEQFGARFNTSKGTVNNWEKGRNIPNRKNLKEIALISGTPVSV 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 S + + +++D +S PD Sbjct: 67 LLKGS---TAHMPFRFPDLVDILSNPD 90 >gi|312867547|ref|ZP_07727755.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096953|gb|EFQ55189.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 73 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ RR L +SQ +L E GI Q Q+ + E G GA L +++ L+ + +F Sbjct: 8 RLKNRRKELKLSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSMDYF 62 >gi|300825194|ref|ZP_07105283.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|300522313|gb|EFK43382.1| helix-turn-helix protein [Escherichia coli MS 119-7] Length = 367 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++L RM +G+S E+L E +G T Q V K EKG R L+ I+ L F F Sbjct: 13 GDKLKLARMAVGLSCEELAEKIGKTKQFVSKLEKGF-RPSEQCLELIASALMIKSDFLF 70 >gi|299144948|ref|ZP_07038016.1| putative prophage L54a, repressor protein [Bacteroides sp. 3_1_23] gi|298515439|gb|EFI39320.1| putative prophage L54a, repressor protein [Bacteroides sp. 3_1_23] Length = 131 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG R+++ RM ++QE++GE L ++ K E G + +RL I+EVL Sbjct: 1 METDLKKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVL 60 Query: 67 ESPISFFFD 75 F+ Sbjct: 61 NMSALELFN 69 >gi|295103062|emb|CBL00606.1| Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3] Length = 219 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 ++ R + G+SQ +L ++ + +Q+YE K +N+ A L ++ L + Sbjct: 151 NLKAMRTLAGLSQSELAGQADVSVRTIQQYEQRQKDINKAQAETLLRLARALNCNVEDLM 210 Query: 75 DVSPT 79 + P Sbjct: 211 EKVPP 215 >gi|257790696|ref|YP_003181302.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474593|gb|ACV54913.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 141 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 19/98 (19%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R + G++Q +L E +T ++ YE G G +++ I+ L Sbjct: 4 GELIRKYRKMRGLTQSELAEKCSLTDSAIRNYELGNRTPGEDQVKGIASALHV------- 56 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +P SD+ + + L+L +ID+ Sbjct: 57 -APESLSDVPVA--------TAREALELI---FRIDEE 82 >gi|239630752|ref|ZP_04673783.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527035|gb|EEQ66036.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 190 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 11/137 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G + +L + G+ + YE+G A L+ ++++ E+ ++ + Sbjct: 6 NRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGTRTPSAEVLKKLADIFETNTAYLMGL 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ-LNRYFIQI----------DDVKVRQKIIELVRS 125 + +++ ++F Q L + I D + I+ S Sbjct: 66 TDAPAETLTNSNLKNIEFEVRSGAFQRLANIVLSIGSEYGGNIDEDSENIVSHILRFYIS 125 Query: 126 IVSSEKKYRTIEEECMV 142 SE + IEE +V Sbjct: 126 SSRSEHLHENIEELQIV 142 >gi|229095345|ref|ZP_04226337.1| Transcriptional regulator [Bacillus cereus Rock3-29] gi|229101455|ref|ZP_04232196.1| Transcriptional regulator [Bacillus cereus Rock3-28] gi|229114294|ref|ZP_04243715.1| Transcriptional regulator [Bacillus cereus Rock1-3] gi|228669314|gb|EEL24735.1| Transcriptional regulator [Bacillus cereus Rock1-3] gi|228681943|gb|EEL36079.1| Transcriptional regulator [Bacillus cereus Rock3-28] gi|228688204|gb|EEL42090.1| Transcriptional regulator [Bacillus cereus Rock3-29] Length = 66 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q+KL E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|256825390|ref|YP_003149350.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus sedentarius DSM 20547] gi|256688783|gb|ACV06585.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus sedentarius DSM 20547] Length = 507 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G IR R+ GM+Q ++ + L + V + E+G + + +SE L+ I Sbjct: 9 IGNLIRDARLHRGMTQTQVADILNTSQSAVARMEQGKQNLSLETVAKVSEALDHDI 64 >gi|226952353|ref|ZP_03822817.1| possible transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226836905|gb|EEH69288.1| possible transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 72 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +G+ IR +R+ L ++QE L GI V + E+G + +L I+E+L+ Sbjct: 4 LSIAIGQLIRNKRLELKITQESLALQCGIDRSYVGRIERGEVNITVEKLYEIAEILKINP 63 >gi|253702047|ref|YP_003023236.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251776897|gb|ACT19478.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 199 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++ + L + G++ + + E + L I++ L+ I + Sbjct: 12 MKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLKIAKGLKVGIHY 71 Query: 73 FFDVS 77 FF+ + Sbjct: 72 FFEEA 76 >gi|197118272|ref|YP_002138699.1| transcriptional regulator with cupin-like beta-barrel domain [Geobacter bemidjiensis Bem] gi|197087632|gb|ACH38903.1| transcriptional regulator with cupin-like beta-barrel domain, putative [Geobacter bemidjiensis Bem] Length = 188 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G RI+ R+ ++ + + G + + + E + L I++ + ++ F Sbjct: 6 NIGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQF 65 Query: 74 F--DVSPTVCSDISSEENNVMDFISTPDG 100 F D + +++ ++ + + +G Sbjct: 66 FSEDEDNRRFEVVRADQRTIVPRVISKEG 94 >gi|134102747|ref|YP_001108408.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915370|emb|CAM05483.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 187 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 13/112 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + L + GI + + E G R L I++ + P+ Sbjct: 5 VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDELV 64 Query: 75 DVSPTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQI-----DDVKVR 116 P I + V+ P GLQ F I + R Sbjct: 65 GAPPVGDPRVRLKPIRRGDMTVVPLTQQPGGLQ---AFKMIMGAGRSEPDPR 113 >gi|311748183|ref|ZP_07721968.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1] gi|126576672|gb|EAZ80920.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1] Length = 63 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R GM+QE L E +G++ Q + EK +S++ E PI F Sbjct: 3 NRVRDFRTAKGMTQEDLAEIIGVSRQTINAIEKEKFDPSLPTAFKMSKLFEKPIEDIFQF 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|33152220|ref|NP_873573.1| hypothetical protein HD1096 [Haemophilus ducreyi 35000HP] gi|33148442|gb|AAP95962.1| hypothetical protein HD_1096 [Haemophilus ducreyi 35000HP] Length = 129 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++IR R +SQE++ + + ++ +K E G +R+ RL+ I+E LE Sbjct: 5 EKIRSLRKNHNLSQEEIADKINLSVSGYRKIENGKSRINHKRLEQIAEALEVSP 58 >gi|325688189|gb|EGD30208.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] gi|327469056|gb|EGF14528.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 225 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|282883282|ref|ZP_06291880.1| transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|281296912|gb|EFA89410.1| transcriptional regulator [Peptoniphilus lacrimalis 315-B] Length = 67 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I R G++Q+++ +G T Q + K E G++ ++ IS LE + + Sbjct: 4 NNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEISRFLECGVEELYSF 63 Query: 77 SPT 79 Sbjct: 64 EDD 66 >gi|257867254|ref|ZP_05646907.1| predicted protein [Enterococcus casseliflavus EC30] gi|257873587|ref|ZP_05653240.1| predicted protein [Enterococcus casseliflavus EC10] gi|257801310|gb|EEV30240.1| predicted protein [Enterococcus casseliflavus EC30] gi|257807751|gb|EEV36573.1| predicted protein [Enterococcus casseliflavus EC10] Length = 263 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R ++QE+L + +T Q + K+E G + ++ +S E + + Sbjct: 1 MDIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSSYFELTLDY 60 Query: 73 FFDVSPTVCSDI 84 + ++ Sbjct: 61 LLKEDQQMVQEL 72 >gi|225856822|ref|YP_002738333.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|225725104|gb|ACO20956.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQHDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|221066672|ref|ZP_03542777.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220711695|gb|EED67063.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 97 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+ +R RR G SQE G+ GI + E+G + + + I L S Sbjct: 16 VRFGEAVRARRKACGYSQEAFGDACGIDRSYIGGIERGEHNLALINILKIIATLNLQPSE 75 Query: 73 FFDVSPTVCSDISSE 87 FF+ +E Sbjct: 76 FFEALDGPTPAALAE 90 >gi|221231799|ref|YP_002510951.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|220674259|emb|CAR68796.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|166030732|ref|ZP_02233561.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] gi|166029524|gb|EDR48281.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] Length = 222 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G++Q+ LGE L +T + V K+E G + + L+ + + L +S Sbjct: 8 GTFIAECRKEKGLTQKALGEKLNVTDRAVSKWETGRSFPDVAILEDLCQELGISVSELLA 67 Query: 76 VSPTVCSDISSEENNVM 92 E ++ Sbjct: 68 GKKIEAEHYQEETEKIL 84 >gi|325277349|ref|ZP_08142974.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097539|gb|EGB95760.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 184 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ +L + +G + + + E+GV+R + L ISE L ++F+ ++ Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLAK 73 Query: 79 TVC 81 Sbjct: 74 PRE 76 >gi|313635327|gb|EFS01613.1| transcriptional regulator, putative [Listeria seeligeri FSL N1-067] gi|313640009|gb|EFS04664.1| transcriptional regulator, putative [Listeria seeligeri FSL S4-171] Length = 170 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 4/97 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+GK ++ R+ LG +Q++ + L I Q K E+G+ +L I L + Sbjct: 10 NIGKNLKAYRLELGATQKEFADELNINHQNYSKMERGIYTPSLEKLLEICNSLRITPNDL 69 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + + +++D + ++ R Sbjct: 70 LLDNREYDEYKQEIFRELDEDILDLMREMKVVEEIRA 106 >gi|296116502|ref|ZP_06835113.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295976968|gb|EFG83735.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 120 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 14/118 (11%) Query: 15 VGKRIRLRRMIL------GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + R+ R L +S +++ + +GI+ + YE+G +R G L ++ Sbjct: 5 IASRLTALRRALAEKLGRKVSAQEVADAVGISRSTLSGYERGHDRPGRETLLALATYYSV 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + N + L + D R+ + L+RS+ Sbjct: 65 SVDYLASGEMPAVQHPDNVAQNGEE--------ALLLALWRRMDEDQRRSWLGLLRSM 114 >gi|291531602|emb|CBK97187.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 355 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS-PTVCSDISS 86 M+QE+L E L I+ Q V ++E + S L ++ + F +V + +I S Sbjct: 1 MTQEQLAEVLSISAQAVSRWETNIALPDISLLPILANFFDVTTDFLLEVDASSREKEIES 60 Query: 87 EENNVMDFIST---PDGLQLNR-YFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEEE 139 ++ + G+++ R + EL ++ S ++ TI +E Sbjct: 61 LSEAAREYTTNGQWSKGVEILRKAIRKYPSAYKLSH--ELASALYCSPQETDTISDE 115 >gi|227511235|ref|ZP_03941284.1| XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085530|gb|EEI20842.1| XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 244 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 ++ G+++++RR L ++Q +L + L +T Q V ++E L +S+ Sbjct: 1 MDFGEQLQIRRKQLNLTQAQLAQKLHVTRQTVSRWETNATYPNLDILVEMSDF 53 >gi|225874194|ref|YP_002755653.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793366|gb|ACO33456.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] Length = 260 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R+ M +LG G++ + + E G L I+ V +S+FF Sbjct: 28 IGERIKRLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLARIAMVFSKDLSYFF 87 Query: 75 DVSPTV 80 + P Sbjct: 88 ETEPHT 93 >gi|206973491|ref|ZP_03234411.1| conserved domain protein [Bacillus cereus AH1134] gi|229181778|ref|ZP_04309089.1| Transcriptional regulator [Bacillus cereus 172560W] gi|206731581|gb|EDZ48783.1| conserved domain protein [Bacillus cereus AH1134] gi|228601695|gb|EEK59205.1| Transcriptional regulator [Bacillus cereus 172560W] Length = 65 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ G++Q++L + + +T Q + E HI++ L+ + F Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLF 61 >gi|150388588|ref|YP_001318637.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948450|gb|ABR46978.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 122 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 10 PVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D +G +IR R++L ++ E+L E L ++ + E+G V L +S L Sbjct: 2 SIDLKLIGNKIRKERILLDLTLEELAEILDLSPSYMGLIERGQRGVSIETLYKLSTTLNV 61 Query: 69 PISFFFDVSPTVCSDI 84 + + D Sbjct: 62 TTDYLLSPADEKACDT 77 >gi|315644612|ref|ZP_07897744.1| transcription regulator [Paenibacillus vortex V453] gi|315280119|gb|EFU43416.1| transcription regulator [Paenibacillus vortex V453] Length = 378 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KR+R R++ G++ L E + ++ Q + ++E G + + + L P SFF+ Sbjct: 12 KRLREARLVRGLTISDLAERISVSKQAISQFELGEHAPRPETVMLLINTLHFPKSFFY 69 >gi|266621149|ref|ZP_06114084.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288867198|gb|EFC99496.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 66 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KR+++ R+ +SQE+LGE +G+T Q + E G + I + L + F Sbjct: 4 KRLKIARIEHDLSQEQLGERVGVTRQTISMIESGNYNPTLNLCIAICKELGKTLDELF 61 >gi|258543801|ref|ZP_05704035.1| XRE family transcriptional regulator [Cardiobacterium hominis ATCC 15826] gi|258520953|gb|EEV89812.1| XRE family transcriptional regulator [Cardiobacterium hominis ATCC 15826] Length = 179 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 30/52 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +++ R++ ++Q ++ E +G++ Q++E G N V ++ ++++L Sbjct: 10 SKLKKYRLLARLTQTEVAEAVGVSQPTYQRWESGTNSVPKTKAAKLAKILGI 61 >gi|229827273|ref|ZP_04453342.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC 49176] gi|229788891|gb|EEP25005.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC 49176] Length = 115 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIR R ++Q KL E L + + K EKG + + ++ +S + + + Sbjct: 7 VEIGKRIRSLRYESKLTQTKLSEYLSLDQSMIAKIEKGERNITSDVIEKLSALFCCTVDY 66 Query: 73 F 73 Sbjct: 67 L 67 >gi|30263168|ref|NP_845545.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528533|ref|YP_019882.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186017|ref|YP_029269.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|52142313|ref|YP_084521.1| helix-turn-helix family DNA-binding protein [Bacillus cereus E33L] gi|65320496|ref|ZP_00393455.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|229012438|ref|ZP_04169613.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] gi|30257802|gb|AAP27031.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503681|gb|AAT32357.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179944|gb|AAT55320.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|51975782|gb|AAU17332.1| DNA-binding protein, helix-turn-helix family [Bacillus cereus E33L] gi|228748797|gb|EEL98647.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] Length = 69 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R G +QE+L +G++ Q + EK I+ E P++ FD Sbjct: 7 NKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVFDY 66 Query: 77 SPT 79 Sbjct: 67 LEE 69 >gi|317473499|ref|ZP_07932791.1| hypothetical protein HMPREF1011_03141 [Anaerostipes sp. 3_2_56FAA] gi|316899010|gb|EFV21032.1| hypothetical protein HMPREF1011_03141 [Anaerostipes sp. 3_2_56FAA] Length = 172 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ G +Q+ LG+ LG + Q + +YEKG L ++++ E Sbjct: 3 MAIGERIHYFRLLRGFTQKYLGKLLGFSDSQADVRIAQYEKGARSPKEKYLNALAQIFEV 62 Query: 69 PI 70 Sbjct: 63 SP 64 >gi|299139477|ref|ZP_07032651.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298598405|gb|EFI54569.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 188 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +R R + +SQ +L + + + K E G S L ++ L+ IS Sbjct: 73 LQVASAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALQVDISA 132 Query: 73 FFDVSPTVCSDISS 86 +PT D ++ Sbjct: 133 LLRDAPTRHQDETA 146 >gi|302388002|ref|YP_003823824.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198630|gb|ADL06201.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 138 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFFFD 75 +R++ +R ++Q +L E G+T + +Q YE G + +Q I++ L + + Sbjct: 5 ERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTEYLLG 64 Query: 76 VSPTVCSDI 84 S T + Sbjct: 65 SSGTYVVEA 73 >gi|283768986|ref|ZP_06341892.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104343|gb|EFC05720.1| DNA-binding protein [Bulleidia extructa W1219] Length = 180 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G RI+ R+ ++ E+L +T + + E+ L ++E L +S Sbjct: 2 INIGARIKQLRLKNDLTLEELASRTELTKGFLSQLERNRTSPSIQSLADVAEALGVNLSG 61 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF E+ V + Sbjct: 62 FFQEDVEEQIVFQEEDAFVDE 82 >gi|228968306|ref|ZP_04129303.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791383|gb|EEM38988.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 40/81 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R +SQ++LGE G++ + V +EKG+ +Q I++ + S Sbjct: 1 MSIGKNIKKLRSKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGAIQKIADHFKILKSD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + I + + + Sbjct: 61 IIEDQDSKITHIRPNQPKIEN 81 >gi|227555817|ref|ZP_03985864.1| transcriptional regulator [Enterococcus faecalis HH22] gi|227174984|gb|EEI55956.1| transcriptional regulator [Enterococcus faecalis HH22] gi|315573616|gb|EFU85807.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315582036|gb|EFU94227.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] Length = 75 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R +SQEKL L I +YE G + S L ++E + + + +++ Sbjct: 7 RIRNLREDADLSQEKLARLLHINQATYSRYETGDLEIPVSSLIKLAEFYSTSVDYLVNLT 66 Query: 78 PTVCS 82 ++ Sbjct: 67 DSMEP 71 >gi|221068872|ref|ZP_03544977.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220713895|gb|EED69263.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 131 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+PN V +G ++R R + SQE+L + ++ K E G L + Sbjct: 18 KLPNAVTKALGTKLRSYRELAQKSQEQLAHEAEVERSRISKLENGHINPSLLTLATLCHC 77 Query: 66 LESPISFFFDVSPTVCSDISS 86 L + F+ S Sbjct: 78 LGITPAELFEGVTATLPPASQ 98 >gi|183220520|ref|YP_001838516.1| putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910629|ref|YP_001962184.1| transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775305|gb|ABZ93606.1| Transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778942|gb|ABZ97240.1| Putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 207 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V + ++L R G S +KL G++ + + E+G + S L I+ L P S Sbjct: 27 VKENLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSELL 86 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 I EN+ + + ++ Sbjct: 87 KEKNQDGIHILKAENSKVLYSNSK 110 >gi|148272464|ref|YP_001222025.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830394|emb|CAN01329.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 107 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R+R +R +G+SQE L E GI + + K E+G + I+ L+ Sbjct: 13 GSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDVDAGLLVT 72 Query: 75 ----DVSPTVCSDISSE 87 D+ P D +E Sbjct: 73 GLTADMLPQDDGDSPAE 89 >gi|120401475|ref|YP_951304.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954293|gb|ABM11298.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 180 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R GM+ + L G+T + K E+G + + IS LE ++ F P Sbjct: 5 LRAVRQERGMTLDDLAADTGLTKSYLSKVERGQSVPSIAAALKISRALEVDVAQLFSDDP 64 Query: 79 TVCS 82 V + Sbjct: 65 EVST 68 >gi|74312212|ref|YP_310631.1| hypothetical protein SSON_1704 [Shigella sonnei Ss046] gi|73855689|gb|AAZ88396.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323169618|gb|EFZ55286.1| helix-turn-helix family protein [Shigella sonnei 53G] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SAMPSVYDPQQQAM 85 >gi|238792829|ref|ZP_04636460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] gi|238727937|gb|EEQ19460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] Length = 154 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 7 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNV 62 >gi|331702111|ref|YP_004399070.1| XRE family transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129454|gb|AEB74007.1| transcriptional regulator, XRE family [Lactobacillus buchneri NRRL B-30929] Length = 66 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +G+SQ L E +G+ Q + E ++E L + ++ F Sbjct: 2 NRVREYRKQVGISQFALAEKVGVARQTINLIENDKYNPSLKLCISLAEELGTDLNTLF 59 >gi|260655665|ref|ZP_05861138.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260629582|gb|EEX47776.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 247 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G IR R G+S L E + I+ V E G L I++ + Sbjct: 6 ITMGANIRELRKKRGISARVLAEAVNISTPFVYDIENGRTLPSVPVLNAIAQYFGVTTDY 65 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + ++ D Sbjct: 66 LMGLDEPGAPSSADKQTAASD 86 >gi|322421967|ref|YP_004201190.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320128354|gb|ADW15914.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 305 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 11/90 (12%) Query: 4 NKKIPNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR---VGAS 57 N+K+P P +D G RIR R ++Q + +G+T + ++E NR + Sbjct: 8 NEKVPLPSVAID---GIRIRTIRETKKLTQLYVANVVGVTTDTISRWEN--NRYPSIKRD 62 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSE 87 Q +++ LE + P + + E Sbjct: 63 NAQKLADALEVTLEEILQPEPPETPEAAQE 92 >gi|256851112|ref|ZP_05556501.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260660536|ref|ZP_05861451.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|282932249|ref|ZP_06337693.1| XRE family transcriptional regulator [Lactobacillus jensenii 208-1] gi|297205977|ref|ZP_06923372.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] gi|256616174|gb|EEU21362.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260548258|gb|EEX24233.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|281303644|gb|EFA95802.1| XRE family transcriptional regulator [Lactobacillus jensenii 208-1] gi|297149103|gb|EFH29401.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] Length = 122 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESP 69 +D+ +G IR RR + ++QE L E G++ + + E+ G + ++ I++ L Sbjct: 1 MDMCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMD 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + DISS + D +L R KV + I+ LV+ I Sbjct: 61 TPSLIAAAYGKV-DISSYKLKGDDIFIQKIVTEL-RKLSTFRAEKVCKAILSLVKEI 115 >gi|148985005|ref|ZP_01818248.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|147922703|gb|EDK73820.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|301800013|emb|CBW32605.1| putative epsilon antitoxin [Streptococcus pneumoniae OXC141] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQHEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|149007308|ref|ZP_01830966.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae SP18-BS74] gi|225859187|ref|YP_002740697.1| hypothetical protein SP70585_1461 [Streptococcus pneumoniae 70585] gi|307127009|ref|YP_003879040.1| hypothetical protein SP670_0875 [Streptococcus pneumoniae 670-6B] gi|147761112|gb|EDK68080.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae SP18-BS74] gi|225720333|gb|ACO16187.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|306484071|gb|ADM90940.1| conserved domain protein [Streptococcus pneumoniae 670-6B] gi|332074745|gb|EGI85219.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 69 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ L ++Q +L + +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGQLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|197119757|ref|YP_002140184.1| helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197089117|gb|ACH40388.1| helix-turn-helix transcriptional regulator with cupin domain [Geobacter bemidjiensis Bem] Length = 199 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++ + L + G++ + + E + L I++ L+ I + Sbjct: 12 MKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLKIAKGLKVGIHY 71 Query: 73 FFDVS 77 FF+ + Sbjct: 72 FFEEA 76 >gi|57237282|ref|YP_178295.1| transcriptional regulator, putative [Campylobacter jejuni RM1221] gi|57166086|gb|AAW34865.1| transcriptional regulator, putative [Campylobacter jejuni RM1221] Length = 210 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 18/114 (15%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE------------VLE 67 + R LG++QE+LG L +T QQ+ EKG + +IS+ L Sbjct: 7 KQIREKLGLTQEQLGNKLNLTRQQIINIEKGKTPISKKYFDNISKLSKKFYIDKEENALN 66 Query: 68 SPISF----FFDVSPTVCSDISSEENNVMDFI--STPDGLQLNRYFIQIDDVKV 115 + F+ + S + N ++ T + L+L++ F + V Sbjct: 67 KDRNKQEINFYSIPKLNISASAGGGNELIGLEEYETGEMLELSKAFFKTTPKNV 120 >gi|69245870|ref|ZP_00603687.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256853747|ref|ZP_05559112.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257879179|ref|ZP_05658832.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257882002|ref|ZP_05661655.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|68195572|gb|EAN10014.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256710690|gb|EEU25733.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257813407|gb|EEV42165.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817660|gb|EEV44988.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] Length = 87 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 78 >gi|325126457|gb|ADY85787.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 119 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK +R R GMSQ++L LG++ Q + +E G + I+ + + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVSRNSIL 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 P + E+ V+D Sbjct: 66 AGLPVEM--LEQEDRRVVDL 83 >gi|291545572|emb|CBL18680.1| Helix-turn-helix [Ruminococcus sp. SR1/5] Length = 97 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 6 VGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADTLL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 DV + +++E ++ + + Sbjct: 66 IDVVAHSVTGVTNELTEKIEKLPIKE 91 >gi|253751715|ref|YP_003024856.1| antidote epsilon protein [Streptococcus suis SC84] gi|253755571|ref|YP_003028711.1| antidote epsilon protein [Streptococcus suis BM407] gi|251816004|emb|CAZ51621.1| antidote epsilon protein [Streptococcus suis SC84] gi|251818035|emb|CAZ55824.1| antidote epsilon protein [Streptococcus suis BM407] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 56 >gi|241894930|ref|ZP_04782226.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] gi|241871938|gb|EER75689.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] Length = 171 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 10/86 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R G++Q +L +G++ + EK N + I++ + + Sbjct: 3 NKIKELRKSNGLTQAQLASKIGVSQPTLSLLEKDGN--SLEDMLPIAQYFGVSLDYLVSG 60 Query: 77 --------SPTVCSDISSEENNVMDF 94 +D S+ NN ++F Sbjct: 61 HLKVIAKQDYKTLTDARSQANNALEF 86 >gi|229824149|ref|ZP_04450218.1| hypothetical protein GCWU000282_01453 [Catonella morbi ATCC 51271] gi|229786503|gb|EEP22617.1| hypothetical protein GCWU000282_01453 [Catonella morbi ATCC 51271] Length = 70 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +VG IR R LG+S+ L E +GI V K E G ++ L+ + L + Sbjct: 5 DHSVGSNIRDIREQLGISKVGLAERIGIHRNAVAKIESGERKLNQKGLKVFARALGVTV 63 >gi|227889182|ref|ZP_04006987.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] gi|227850411|gb|EEJ60497.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] Length = 161 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++I+ R ++QE++ + L +T Q + +EK N + I++ + Sbjct: 5 EQIKRLRKESNLTQEEMAKKLNVTRQAIFNWEKNRNPPDFEMIILIAKTFGVSLD 59 >gi|170770018|ref|ZP_02904471.1| helix-turn-helix domain protein [Escherichia albertii TW07627] gi|170770180|ref|ZP_02904633.1| helix-turn-helix domain protein [Escherichia albertii TW07627] gi|291283193|ref|YP_003500011.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|301021345|ref|ZP_07185372.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|170120955|gb|EDS89886.1| helix-turn-helix domain protein [Escherichia albertii TW07627] gi|170121084|gb|EDS90015.1| helix-turn-helix domain protein [Escherichia albertii TW07627] gi|290763066|gb|ADD57027.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|299881567|gb|EFI89778.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|320657713|gb|EFX25502.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663395|gb|EFX30692.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. USDA 5905] gi|323956985|gb|EGB52712.1| helix-turn-helix protein [Escherichia coli H263] Length = 363 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++L RM +G+S E+L E +G T Q V K EKG R L+ IS L SF F Sbjct: 9 GDKLKLARMAVGLSCEELAEKIGKTKQFVSKLEKG-CRPSEQCLELISSALMIKSSFLF 66 >gi|167632540|ref|ZP_02390867.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|254685775|ref|ZP_05149634.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723182|ref|ZP_05184970.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. A1055] gi|254738245|ref|ZP_05195948.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742587|ref|ZP_05200272.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752560|ref|ZP_05204596.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761076|ref|ZP_05213100.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Australia 94] gi|167532838|gb|EDR95474.1| DNA-binding protein [Bacillus anthracis str. A0442] Length = 66 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R G +QE+L +G++ Q + EK I+ E P++ FD Sbjct: 4 NKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVFDY 63 Query: 77 SPT 79 Sbjct: 64 LEE 66 >gi|20091735|ref|NP_617810.1| transcriptional regulator [Methanosarcina acetivorans C2A] gi|19916914|gb|AAM06290.1| transcriptional regulator, Hth-3 family [Methanosarcina acetivorans C2A] Length = 184 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S EK+ E L ++ + +KYE G + AS L I+ L+ ++ Sbjct: 6 KEIAARVRELRELSEISVEKMAEYLQVSPETYEKYESGTEDIPASILFEIAHRLQVDMAT 65 Query: 73 FFDVSPTVCS 82 + Sbjct: 66 LLTGEEPRMN 75 >gi|297195428|ref|ZP_06912826.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152779|gb|EDY63104.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 206 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ + Sbjct: 17 LDSLVRKRIRALRVAQGWSLEELAARGRLSQSTLSRIENGHRRLALDQLVTLARALDTSL 76 Query: 71 SFFFDVS 77 + + Sbjct: 77 DQLVETA 83 >gi|284045488|ref|YP_003395828.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949709|gb|ADB52453.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 84 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R +SQE L G+ + + + E+G AS + +++ L I + Sbjct: 17 IRQLRRDRELSQEALANAAGVHPKHLSEIERGNKDPRASTVARLADALGVSIGELYGQPG 76 Query: 79 TVCSDISS 86 S Sbjct: 77 GDEPGASG 84 >gi|260433144|ref|ZP_05787115.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416972|gb|EEX10231.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 129 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R+ R GM+Q +L LG+ V +E ++ A++L ++ +L I + Sbjct: 16 GDRLAGAREAAGMTQAQLARRLGVKKATVVGWENDMSEPRANKLSMMAGMLNVSIMWLLT 75 Query: 75 -DVSPTVCSDISSEENNVMDFIS 96 + D+ + + ++ Sbjct: 76 GEGEGAGVPDLVEGDAELAPLVA 98 >gi|302540449|ref|ZP_07292791.1| cro/CI family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458067|gb|EFL21160.1| cro/CI family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 196 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 2/84 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ +++ L I+ D Sbjct: 19 RNLKRWRNERGYTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 78 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 + E V + + + Sbjct: 79 EQEARVRLVPPEQAVR--MWSTEA 100 >gi|228962123|ref|ZP_04123603.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797559|gb|EEM44692.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 66 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R R G++Q +L L + + KYE G++ L + + + I F Sbjct: 8 LREIRKEKGLTQNQLANLLDLDKTSISKYESGIHSPSLRVLVLYANIFGTQIENF 62 >gi|228962984|ref|ZP_04124195.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796705|gb|EEM44103.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 136 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R + GMS++ L L I + + +E G + +L I+ +S + Sbjct: 5 GQNLKKLRGMRGMSRKDLANELDIPYVTLTTWESGSRIPNSDKLIPIANFFGVSVSDLVE 64 >gi|196035367|ref|ZP_03102772.1| transcriptional regulator SinR [Bacillus cereus W] gi|195992044|gb|EDX56007.1| transcriptional regulator SinR [Bacillus cereus W] Length = 107 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDETTKEANLDSE 75 >gi|165869157|ref|ZP_02213817.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167637409|ref|ZP_02395689.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170684835|ref|ZP_02876060.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704913|ref|ZP_02895378.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649881|ref|ZP_02932882.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565074|ref|ZP_03017995.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813967|ref|YP_002813976.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602589|ref|YP_002867433.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|164715883|gb|EDR21400.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514916|gb|EDR90282.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170129768|gb|EDS98630.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671095|gb|EDT21833.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083833|gb|EDT68892.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564391|gb|EDV18355.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227007141|gb|ACP16884.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229266997|gb|ACQ48634.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 65 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R G +QE+L +G++ Q + EK I+ E P++ FD Sbjct: 3 NKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVFDY 62 Query: 77 SPT 79 Sbjct: 63 LEE 65 >gi|154504675|ref|ZP_02041413.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC 29149] gi|153795157|gb|EDN77577.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC 29149] Length = 130 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 10/123 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R +G++Q++L + LG+ + YE G + + + Sbjct: 3 ERIKELRKTIGITQQELADKLGLKRNTIATYEIGKAIPSDRVISDLCNKYSVNEEWLRSG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + S E + ++ + DG+ F I IIE+++ ++K + + Sbjct: 63 NGEMFKQPSDEVGHYVEDLLEYDGV--GNPFYDI--------IIEMMKKYQEMDEKSKLV 112 Query: 137 EEE 139 E Sbjct: 113 IRE 115 >gi|94968151|ref|YP_590199.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550201|gb|ABF40125.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 338 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 12/105 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG---ASRLQHISEVLESPIS 71 VG RIR R+ G+S L + +G+T Q +Q E+ V+ + + L+ I+ L++ ++ Sbjct: 222 VGSRIRELRLEAGLSLGDLAKRVGLTEQGLQNIEENVDTISNPGLTVLRWIATALKTTVA 281 Query: 72 FFFD---------VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 D + ++ +S IS D L R + Sbjct: 282 ELVDPDYAENVIAGIRSTFNERASAIAARFSGISQKDKRALLRRY 326 >gi|48697282|ref|YP_025049.1| putative repressor protein [Lactobacillus phage phiAT3] gi|47607173|gb|AAT36509.1| putative repressor protein [Lactobacillus phage phiAT3] Length = 257 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +NVG+R++ R G+S + L +G++ V +YEKG + +V + ++ L Sbjct: 1 MNVGERMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVPIEVVAKVANALNIKPE 60 Query: 72 FFFDVSPTVCSDISSE 87 + D + Sbjct: 61 VLMGLKADTVVDKIHD 76 >gi|95930238|ref|ZP_01312976.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95133701|gb|EAT15362.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 191 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+++ R+ M+ E L ++ + + E+G+ L ++ IS+F Sbjct: 6 IGKKLKKMRLNNDMTIEGLANKSQVSSNMISRIERGLTTPSVEILMKLAGAFGMSISYFV 65 Query: 75 DVSPTVCS--DISSEENNVMDFISTPDGL 101 + + + + + F + Sbjct: 66 EEAEKGSTVVHTPNGSGEPIFFFEDKHQI 94 >gi|328945610|gb|EGG39761.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 225 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RRM L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|325697038|gb|EGD38925.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] Length = 225 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RRM L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|312889751|ref|ZP_07749297.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297677|gb|EFQ74800.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 133 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + ++G++I R + G+ QE L LG++ Q V + E+ + L+ ++++L Sbjct: 7 PSNNHIGRKIGRIRELRGIKQEVLAAELGVSQQTVSRMEQSET-IEDDVLEKVAKILGVS 65 >gi|301166893|emb|CBW26471.1| putative helix-turn-helix DNA-binding protein [Bacteriovorax marinus SJ] Length = 189 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+ N + + I+ R +Q++L E GI + E G S + Sbjct: 3 MSQNELDINAFNSYISHNIKFLRAKRNYTQKQLSEVSGIPRTTLTNIESGEGNPSLSNII 62 Query: 61 HISEVLESPIS 71 +++ L I Sbjct: 63 KLAKALNVSID 73 >gi|298482236|ref|ZP_07000423.1| DNA-binding protein [Bacteroides sp. D22] gi|298271523|gb|EFI13097.1| DNA-binding protein [Bacteroides sp. D22] Length = 159 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 16/140 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ IR R+ M+QE L E + ++ V KYEK + LQ + L P + Sbjct: 11 VHHGRNIRRTRIEKNMNQEGLSELVHLSQPAVSKYEKMKV-IDDEMLQRFARALNVPFDY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN----RYFI---------QIDDVKVRQKI 119 + E N V D G ++N + + ++++ KI Sbjct: 70 L-KTLEEDAQTVVFENNTVNDSEQNTGGAKINIGTVKSYTEDTDSSNDNRVNNFNPIDKI 128 Query: 120 IELVRSIVSS-EKKYRTIEE 138 EL ++ ++KY +E Sbjct: 129 TELYERLLKEKDEKYAALER 148 >gi|297623546|ref|YP_003704980.1| XRE family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164726|gb|ADI14437.1| transcriptional regulator, XRE family [Truepera radiovictrix DSM 17093] Length = 187 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G R+R R+ G + +++ E G++ + E G V A RLQ ++ V +S Sbjct: 5 HLGHRLRALRLAHGYTLQQVAERSGLSRSFLSMLENGRTNVSAVRLQKLAGVFGLGLS-- 62 Query: 74 FDVSPTVCSDIS 85 D+ P Sbjct: 63 -DLLPNEGGQSG 73 >gi|257068924|ref|YP_003155179.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Brachybacterium faecium DSM 4810] gi|256559742|gb|ACU85589.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Brachybacterium faecium DSM 4810] Length = 517 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 1 MVGNKKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M + D +G IR R G++Q +L LG + V + EKG + Sbjct: 1 MSYGHDMTENEDYLSRIGTLIRDARQHSGLTQAQLASELGTSQSAVNRIEKGQQNLTLET 60 Query: 59 LQHISEVLE 67 L I L+ Sbjct: 61 LSKIGSALD 69 >gi|228910327|ref|ZP_04074143.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] gi|228849279|gb|EEM94117.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] Length = 194 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 5 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 64 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 I++ L P+S V V E V + F T + G++++R Sbjct: 65 WKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDEGQAWHLETMFRYTKETGMEMHRA 121 >gi|228989826|ref|ZP_04149806.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228996017|ref|ZP_04155672.1| Transcriptional regulator [Bacillus mycoides Rock3-17] gi|229003633|ref|ZP_04161448.1| Transcriptional regulator [Bacillus mycoides Rock1-4] gi|228757599|gb|EEM06829.1| Transcriptional regulator [Bacillus mycoides Rock1-4] gi|228763713|gb|EEM12605.1| Transcriptional regulator [Bacillus mycoides Rock3-17] gi|228769973|gb|EEM18556.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 72 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q++L E +G+T Q + EKG I + ++ F Sbjct: 10 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNQTLNDLF 67 >gi|254557574|ref|YP_003063991.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300767504|ref|ZP_07077415.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181654|ref|YP_003925782.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254046501|gb|ACT63294.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300494883|gb|EFK30040.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047145|gb|ADN99688.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 273 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RI R+ G+S KL +G+ + +EKG A RL ++ + Sbjct: 3 IDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYFDV 62 Query: 69 PISFF 73 ++ Sbjct: 63 STNYL 67 >gi|297204985|ref|ZP_06922381.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16] gi|297149563|gb|EFH29860.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16] Length = 136 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R +SQE++ L I+ Q + K+E G + +L +S++ + + Sbjct: 6 ERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYL 62 >gi|197117030|ref|YP_002137457.1| LexA-like helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197086390|gb|ACH37661.1| helix-turn-helix transcriptional regulator, LexA-related protein [Geobacter bemidjiensis Bem] Length = 209 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R+ LG++Q++ LGI + E G R + L +S + D Sbjct: 11 GVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGINAQWLSD 70 Query: 76 VSPTV-CSDISSEENNV 91 S + +E+ NV Sbjct: 71 GSGESFKNQPGAEQPNV 87 >gi|126348447|emb|CAJ90170.1| putative regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 191 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 11/109 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R ++ L E GI+ + + E G+ R L I++ + P+ Sbjct: 11 VGPRLRQVRKEREVTLAALSETTGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 70 Query: 75 DVSPTVCSDISSEENNVMD-----FISTPDGLQLNRYFIQIDDVKVRQK 118 P + ++ P GLQ F ++ R+K Sbjct: 71 GAPPVGDPRVRAKPIERHGRTHWPLTRQPGGLQ---AFKVLEP---RRK 113 >gi|86739175|ref|YP_479575.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566037|gb|ABD09846.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 325 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G IR +R +S +L + G++ + + E+G+ R A LQ I++ L Sbjct: 70 RDLGDFIRDQRHSAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEV 129 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + V + + EEN + ++ Sbjct: 130 LY-VQAGILEERQGEENVMAAVLAD 153 >gi|206563935|ref|YP_002234698.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198039975|emb|CAR55953.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 185 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 79 T 79 Sbjct: 74 P 74 >gi|323702873|ref|ZP_08114531.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532131|gb|EGB22012.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 132 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RIR R LG+S+E+ E +G++ V + E+G ++ L I L + Sbjct: 9 NKTIGQRIREEREKLGLSREEFAEIIGLSNYYVGQLERGERQMSLPVLVKIVNCLHVSLD 68 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 + + +E V + Sbjct: 69 YLIFGKDYQNAGNVNESQIVYE 90 >gi|323693267|ref|ZP_08107485.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14673] gi|323502750|gb|EGB18594.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14673] Length = 115 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK +D +G R++ R ++ E+L E G++ + +++ E N +L Sbjct: 1 MARKKK----IDKEMGFRLKQARTEQKLTYEELAEKSGVSSRYIKEIENHGNVPSLEKLG 56 Query: 61 HISEVLESPIS-FFFDVSPTVCSD 83 + L FF+ P D Sbjct: 57 QLIRALHISADPFFYPTVPADNLD 80 >gi|299537075|ref|ZP_07050378.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298727316|gb|EFI67888.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 183 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 11 VDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D+ VG +R R MS E+L + ++ + K E+G + L I L Sbjct: 6 IDLSGQVGGNLREIRKSKRMSLEELAKVSNVSKLTLGKIERGETNPTVNILWKICRGLNI 65 Query: 69 PI 70 P+ Sbjct: 66 PL 67 >gi|291009445|ref|ZP_06567418.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 190 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 13/112 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + L + GI + + E G R L I++ + P+ Sbjct: 8 VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDELV 67 Query: 75 DVSPTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQI-----DDVKVR 116 P I + V+ P GLQ F I + R Sbjct: 68 GAPPVGDPRVRLKPIRRGDMTVVPLTQQPGGLQ---AFKMIMGAGRSEPDPR 116 >gi|261822660|ref|YP_003260766.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261606673|gb|ACX89159.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 154 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 60 Query: 67 ES 68 Sbjct: 61 SV 62 >gi|228954773|ref|ZP_04116794.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072008|ref|ZP_04205218.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|229081756|ref|ZP_04214249.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|229111966|ref|ZP_04241510.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|229152697|ref|ZP_04280884.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|229180769|ref|ZP_04308107.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|229192702|ref|ZP_04319661.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228590792|gb|EEK48652.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228602747|gb|EEK60230.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|228630760|gb|EEK87402.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|228671530|gb|EEL26830.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|228701601|gb|EEL54094.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228711167|gb|EEL63132.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|228804893|gb|EEM51491.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 194 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 5 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 64 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 I++ L P+S V V E V + F T + G++++R Sbjct: 65 WKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDEGQAWHLETMFRYTKETGMEMHRA 121 >gi|228955292|ref|ZP_04117300.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961271|ref|ZP_04122890.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229049716|ref|ZP_04194273.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676] gi|229072514|ref|ZP_04205716.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185] gi|229082273|ref|ZP_04214736.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2] gi|229112472|ref|ZP_04242009.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15] gi|229130284|ref|ZP_04259243.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4] gi|229142358|ref|ZP_04270877.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26] gi|229147576|ref|ZP_04275921.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24] gi|229153219|ref|ZP_04281398.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550] gi|229181321|ref|ZP_04308651.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W] gi|229193309|ref|ZP_04320259.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876] gi|228590110|gb|EEK47979.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876] gi|228602214|gb|EEK59705.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W] gi|228630318|gb|EEK86968.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550] gi|228635866|gb|EEK92351.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24] gi|228641128|gb|EEK97440.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26] gi|228653217|gb|EEL09096.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4] gi|228670852|gb|EEL26159.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15] gi|228700705|gb|EEL53228.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2] gi|228710490|gb|EEL62463.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185] gi|228722629|gb|EEL74017.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676] gi|228798392|gb|EEM45386.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804425|gb|EEM51036.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 79 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFFDVSPTVCSD 83 F + D Sbjct: 66 EIFTLVEGEEDD 77 >gi|222112401|ref|YP_002554665.1| XRE family transcriptional regulator [Acidovorax ebreus TPSY] gi|221731845|gb|ACM34665.1| transcriptional regulator, XRE family [Acidovorax ebreus TPSY] Length = 113 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 16/108 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFFF 74 G R+R R ++ +++ + +G T + + E K R A R+Q I++VL ++ Sbjct: 6 GVRLRRLREAKKLTLQQVADAVGCTKAYIWELEMKDGQRPSAERIQAIAKVLGVTMA--- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKI 119 DV ++ ++P+ + R + + D + RQ + Sbjct: 63 DVMGEPIKEVPQ---------ASPEDVAFFREYAGMTDEEKDRYRQAL 101 >gi|194447862|ref|YP_002046706.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359443|ref|ZP_02670069.2| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194406166|gb|ACF66385.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336086|gb|EDZ22850.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 96 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+++ R+ ++Q +LG G+ ++ YEK V+ + ++ L+ P Sbjct: 2 IGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPE 61 Query: 71 SFFFDVSPTVCS 82 ++F+ V + Sbjct: 62 AYFYAVDDELAE 73 >gi|29171513|ref|NP_808697.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856006|gb|AAO59063.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] Length = 111 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 4/98 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +SQ L E +G V +YE+G G +L I+ V Sbjct: 2 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELL 61 Query: 75 DVSPTVCS----DISSEENNVMDFISTPDGLQLNRYFI 108 V + E + + +P+ L+ FI Sbjct: 62 PGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEMLNFI 99 >gi|78186413|ref|YP_374456.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166315|gb|ABB23413.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 205 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 32/80 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+RI+ R G+SQE+L + + V K E G V L +E L + Sbjct: 5 NIGQRIKELRGQKGLSQEELARRIAMPRTAVTKIESGSQEVRFRELAKFAEALGISLGTL 64 Query: 74 FDVSPTVCSDISSEENNVMD 93 + V + V D Sbjct: 65 LEERRPVRESVEDAFLRVSD 84 >gi|58337201|ref|YP_193786.1| transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227903784|ref|ZP_04021589.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796] gi|58254518|gb|AAV42755.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227868671|gb|EEJ76092.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796] Length = 112 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I R M+Q +L + GI + K EKG +V + L+ I+ L D+ Sbjct: 9 QKITNYREAQDMTQAELADKSGIERTALNKIEKGTRKVSSDELKAIALALNISADTLLDL 68 Query: 77 SPTVCS 82 + + + Sbjct: 69 NGSELT 74 >gi|37528296|ref|NP_931641.1| hypothetical protein plu4475 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787734|emb|CAE16847.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 87 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G+SQE+LG GI ++ +YE+G++ ++ VL P +F Sbjct: 5 RLKAARLKAGLSQERLGILAGIDEATASARMNQYERGIHTPDFELACRLASVLHVPACYF 64 Query: 74 FDVSPTVCS 82 + V + Sbjct: 65 YAVEDDLAE 73 >gi|107027170|ref|YP_624681.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691438|ref|YP_836971.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896544|gb|ABF79708.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116649438|gb|ABK10078.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 123 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 12/109 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R L M+Q + GE G+ Q YE+G AS L ++E+ + + Sbjct: 7 RLKQERRRLQMNQAEFGEAGGVRKQAQSNYEQGSRIPDASYLTRLAEI-GVDVQYLLTGR 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+ ++ + + L F ++ + R+ ++ LV +I Sbjct: 66 PSDPGTLALTGDEEL----------LLAGFRELK-PRERRGVLALVAAI 103 >gi|325956739|ref|YP_004292151.1| Cro/CI family transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325333304|gb|ADZ07212.1| Cro/CI family transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 187 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 3/105 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ + E + E +GI Q +KYE G + ++ P+++ V Sbjct: 2 NRLKKVRLERNYTLEDIEEKIGIDRAQYEKYENGDEKPTLGMWLKLAVYFNVPVAYLQGV 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 S +I + + PD FI I +++ +++ Sbjct: 62 SKIKDINILMDSQKFAKAVGVPDVDP---RFINIPKNEMKAAVLQ 103 >gi|319938878|ref|ZP_08013242.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811928|gb|EFW08194.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGDNIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVS 56 >gi|257874864|ref|ZP_05654517.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257809030|gb|EEV37850.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 86 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ ++Q++L + +G++ Q + EKG ++ V + I+ F Sbjct: 16 IANKVYEYRVLARLTQQELADKVGVSKQTIFVMEKGNYTPTLLLAYRLANVFQVDITDLF 75 >gi|224536634|ref|ZP_03677173.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus DSM 14838] gi|224521725|gb|EEF90830.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus DSM 14838] Length = 130 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 10/110 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG+R++L RM ++QE++GE L ++ K E G + +RL I+EV+ Sbjct: 1 METDLKKIVGQRLQLLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVM 60 Query: 67 ESP-ISFF--------FDVSPTVCSDISSEEN-NVMDFISTPDGLQLNRY 106 I F F+ S T+ + I + + + ++ D +L + Sbjct: 61 NMSAIDLFRKIDGNSYFNNSSTIGTSIGIARDCSTIKIEASEDLRELIKA 110 >gi|182418405|ref|ZP_02949699.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237666621|ref|ZP_04526606.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377787|gb|EDT75331.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237657820|gb|EEP55375.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 435 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L + IT Q+ E G + L++++ L + + + Sbjct: 6 LGEKIKRRRKQLNMTLKDLAKD-RITPGQISLVESGRSNPSVDLLEYLASTLNTTVEYLM 64 Query: 75 DVSPTVCSDIS 85 + + IS Sbjct: 65 ESEESQAEKIS 75 >gi|160883371|ref|ZP_02064374.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483] gi|260172676|ref|ZP_05759088.1| hypothetical protein BacD2_12486 [Bacteroides sp. D2] gi|156111091|gb|EDO12836.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483] Length = 116 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+ I+ R ++QE+LGE +G+ Q+ K E G + + S + + + Sbjct: 48 IGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS-ISFSTIVRAFKAMGV 100 >gi|145641622|ref|ZP_01797199.1| possible transcriptional regulator [Haemophilus influenzae R3021] gi|145273669|gb|EDK13538.1| possible transcriptional regulator [Haemophilus influenzae 22.4-21] Length = 127 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR+ R + +SQE + E + ++ K E+G R+ +L I+++ +S D Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLVDND 65 Query: 78 PTV 80 V Sbjct: 66 KGV 68 >gi|327441857|dbj|BAK18222.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 368 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 RR L ++QE++ +G++ V K+EKG + + L ++ I P + Sbjct: 12 ERRKQLQVTQEEIARHVGVSRAAVSKWEKGQSYPDIALLPKLATFFNISIDALLGYEPQL 71 Query: 81 CSD 83 ++ Sbjct: 72 TNE 74 >gi|323481376|gb|ADX80815.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 71 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G SQ +L + + +T Q + ++ G +++ +SE+L PI+ F Sbjct: 5 SNLSRYRKEKGFSQTELAKKMNVTQQCISSWQTGRTIPKPYQMKMLSEILSVPINELF 62 >gi|319936268|ref|ZP_08010686.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] gi|319808644|gb|EFW05188.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] Length = 212 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K++ R +Q+ L + LGI+ + + ++E + L I+++ I + Sbjct: 8 KKLISLRKKYNFTQQDLADKLGISNKTISRWETSESYPDIDLLPKIADIFHVSIDYL 64 >gi|315925034|ref|ZP_07921251.1| LexA repressor 1 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621933|gb|EFV01897.1| LexA repressor 1 [Pseudoramibacter alactolyticus ATCC 23263] Length = 219 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLES 68 +D+ K I+ RR L +SQ KL E +G T + K E G + S++ I+E L + Sbjct: 2 IDLY--KNIKKRRQELKISQSKLAELVGYTNRSSIAKIEAGKIDLPQSKIVEIAEALRT 58 >gi|311105237|ref|YP_003978090.1| hypothetical protein AXYL_02046 [Achromobacter xylosoxidans A8] gi|310759926|gb|ADP15375.1| helix-turn-helix family protein 5 [Achromobacter xylosoxidans A8] Length = 245 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G IR RR LG + L +G V + E+G L I+ L P+ Sbjct: 29 MSLGDNIRQRRKALGWTILDLANRIGSDVGNVSRLERGKQGYSDEILAKIAAALGCPVGE 88 Query: 73 FF 74 F Sbjct: 89 LF 90 >gi|265764159|ref|ZP_06092727.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256767|gb|EEZ28113.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163497|emb|CBW23048.1| putative DNA binding protein [Bacteroides fragilis 638R] Length = 103 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+ +R RR L ++Q++L E +G + + EKG + S I+ L Sbjct: 44 GEILRDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARALGI 96 >gi|226322382|ref|ZP_03797900.1| hypothetical protein COPCOM_00150 [Coprococcus comes ATCC 27758] gi|225209240|gb|EEG91594.1| hypothetical protein COPCOM_00150 [Coprococcus comes ATCC 27758] gi|295108685|emb|CBL22638.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 209 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I Sbjct: 8 KLIGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIE 67 Query: 72 FFFDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 68 WLRGETNEYETDITDKKE 85 >gi|239626675|ref|ZP_04669706.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516821|gb|EEQ56687.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 194 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +GK I R M+Q +L + I+ + V K+E+G+ S L +S++ + Sbjct: 3 NVKIGKLIYQLRKENRMTQLQLANQMNISDKAVSKWERGLGCPELSLLPELSKIFNVDL 61 >gi|94968170|ref|YP_590218.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550220|gb|ABF40144.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 74 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + VGKRIR R+ G +Q + L I + E+G G LQ I+ L++ Sbjct: 6 HALLLAVGKRIRALRIQKGWTQTDMAVYLDINRGHISDIERGKREAGLITLQIIARGLDT 65 Query: 69 PIS 71 ++ Sbjct: 66 TMA 68 >gi|322385349|ref|ZP_08058994.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270608|gb|EFX53523.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|317494163|ref|ZP_07952579.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917936|gb|EFV39279.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 154 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 7 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNV 62 >gi|294632875|ref|ZP_06711434.1| DNA-binding protein [Streptomyces sp. e14] gi|292830656|gb|EFF89006.1| DNA-binding protein [Streptomyces sp. e14] Length = 190 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P + VG IR R LG+ +L G++ + + E+G+ + + I++ L Sbjct: 6 PSPEALAVGSVIRGHRRRLGVPMAELAARSGLSQPFLSQLERGLTTPSLASIYKIADALS 65 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 P F + P+ SD + E + I +G Sbjct: 66 LPPGIF--LRPSSTSDTVAHEEDP-QVIRVTEG 95 >gi|257890009|ref|ZP_05669662.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260560174|ref|ZP_05832351.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|257826369|gb|EEV52995.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073741|gb|EEW62066.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] Length = 87 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 78 >gi|239626415|ref|ZP_04669446.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516561|gb|EEQ56427.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 146 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R+ ++Q+++ E L +T Q V ++E G + L+ IS + I+ Sbjct: 7 LKNIRVKNKLTQDEMAERLSVTRQAVSRWENGDSTPNIETLKQISIAFDVSIN 59 >gi|189405314|ref|ZP_02814730.2| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|261223695|ref|ZP_05937976.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK2000] gi|261255895|ref|ZP_05948428.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK966] gi|300817229|ref|ZP_07097447.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|331680492|ref|ZP_08381151.1| regulatory protein [Escherichia coli H591] gi|331681931|ref|ZP_08382564.1| regulatory protein [Escherichia coli H299] gi|189370740|gb|EDU89156.1| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|300530205|gb|EFK51267.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|309700480|emb|CBI99774.1| putative cI regulatory protein [Escherichia coli ETEC H10407] gi|331071955|gb|EGI43291.1| regulatory protein [Escherichia coli H591] gi|331081133|gb|EGI52298.1| regulatory protein [Escherichia coli H299] Length = 230 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + L +I++ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIA 60 Query: 72 FFF 74 F Sbjct: 61 DLF 63 >gi|163856318|ref|YP_001630616.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163260046|emb|CAP42347.1| predicted transcriptional regulator [Bordetella petrii] Length = 219 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 32/76 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G+++R R G+S ++ + GI+ + + E+G++ + ++ + Sbjct: 28 IDFWLGQQLRQLRKQHGLSLMQVAKACGISVGLLSQVERGLSSPSVKIVTLLAGQFGVSV 87 Query: 71 SFFFDVSPTVCSDISS 86 + + + Sbjct: 88 DSLLRGTGQGGGEAAG 103 >gi|127514555|ref|YP_001095752.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126639850|gb|ABO25493.1| transcriptional regulator, XRE family [Shewanella loihica PV-4] Length = 65 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +Q L L ++ Q + EKG I+ + + PI F+ Sbjct: 3 NRLKPLRAERNWTQADLAGLLDVSRQTINAIEKGKYDPSLPLAFKIARLFQLPIEAIFEE 62 Query: 77 SPT 79 Sbjct: 63 DEA 65 >gi|330890890|gb|EGH23551.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 199 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 5 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 64 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 65 VLGMPMSKLFSQYDQQGSSAL--------LVRADEGLEVVR 97 >gi|330467774|ref|YP_004405517.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810745|gb|AEB44917.1| transcriptional regulator, XRE family protein [Verrucosispora maris AB-18-032] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R M+ +L ++ + + E G S L+ +++V ++ I+ F Sbjct: 2 LGDRLRDLRQQHSMTLRQLATAADVSPALLSQIENGATDPSLSTLRKLAQVFDTSIAELF 61 Query: 75 DVSPTVCSDIS 85 +S Sbjct: 62 SEPEAPAVHLS 72 >gi|313898840|ref|ZP_07832374.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956422|gb|EFR38056.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 150 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE++ E +G++ Q + K+E + + ++++ + Sbjct: 1 MNLGNSLFHARKKSGLSQEEVAEKIGVSRQTISKWETNETVPDIYQSKKMAKLYRISLDE 60 Query: 73 F--FDVSPTVCSDISSEENNVMD 93 FD+ ++ + + ++ Sbjct: 61 LIEFDIDLQEIEEMIDKSDEKLN 83 >gi|307708405|ref|ZP_07644871.1| conserved domain protein [Streptococcus mitis NCTC 12261] gi|307615504|gb|EFN94711.1| conserved domain protein [Streptococcus mitis NCTC 12261] Length = 69 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ L ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|302532682|ref|ZP_07285024.1| transcriptional regulator [Streptomyces sp. C] gi|302441577|gb|EFL13393.1| transcriptional regulator [Streptomyces sp. C] Length = 191 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P I VG+ IR R +S L G++ + + E+G+ S + I+E L+ Sbjct: 6 PTPEAIEVGRAIRECRTARRVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRIAEALD 65 Query: 68 SPISFFFDVSPTVCSDISSEENN 90 F P +S E + Sbjct: 66 VAPGTFLR-PPGRPGVVSHESDP 87 >gi|295703244|ref|YP_003596319.1| HTH-type transcriptional regulator SinR [Bacillus megaterium DSM 319] gi|294800903|gb|ADF37969.1| HTH-type transcriptional regulator sinR [Bacillus megaterium DSM 319] Length = 120 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R+ S +L E I+ + + EKG N L I+ L + I + Sbjct: 2 IGERIKEIRLRKHYSITRLAEEAQISKSYLSQIEKGANTNPSLQMLYKIAASLGTTIDYL 61 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 D ++ S +++S Sbjct: 62 IDEKTDGVTNKESAPYITEEWLS 84 >gi|260664469|ref|ZP_05865321.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|260561534|gb|EEX27506.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] Length = 76 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESP 69 +D+ +G IR RR + ++QE L E G++ + + E+ G + ++ I++ L Sbjct: 1 MDMCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMD 60 >gi|291298297|ref|YP_003509575.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567517|gb|ADD40482.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 262 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ IR R ++Q++L G++ + + E G +R AS + + E L+ P+ Sbjct: 14 GELIRHWRGQRHLTQQQLSIRCGVSTRHLSFIETGRSRPTASMILRVCEELDVPL 68 >gi|229016024|ref|ZP_04172980.1| Transcriptional regulator [Bacillus cereus AH1273] gi|229022243|ref|ZP_04178788.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228739046|gb|EEL89497.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228745257|gb|EEL95303.1| Transcriptional regulator [Bacillus cereus AH1273] Length = 66 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q++L E +G+T Q + EKG I + ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNKTLNDLF 61 >gi|296125780|ref|YP_003633032.1| XRE family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296017596|gb|ADG70833.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM 12563] Length = 139 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK IR R + ++ E GI+ + +Q E G + + L I++ L PI+ F Sbjct: 39 VGKNIRAIRKSQMKTISEIAEVSGISSKYLQSVEVGKRNISITNLNKIAKTLNVPIAVLF 98 >gi|183598576|ref|ZP_02960069.1| hypothetical protein PROSTU_01973 [Providencia stuartii ATCC 25827] gi|188020752|gb|EDU58792.1| hypothetical protein PROSTU_01973 [Providencia stuartii ATCC 25827] Length = 110 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R +S +L + ++ QQ+ +YE GV + L I + + FF Sbjct: 25 VGIELRKLRKSYSLSGRELAGIMNVSQQQISRYECGVCAIPTDVLIIILGFFKITLFEFF 84 Query: 75 DV 76 Sbjct: 85 KG 86 >gi|167590295|ref|ZP_02382683.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 185 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ +L + +G + + + E+G++R + L I E L P ++F+ + Sbjct: 14 IRDLRKHRKVTLNELADRIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLDK 73 Query: 79 T 79 Sbjct: 74 P 74 >gi|149004216|ref|ZP_01829008.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|149012995|ref|ZP_01833884.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|149019646|ref|ZP_01834965.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225856698|ref|YP_002738209.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|303255604|ref|ZP_07341655.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|303260497|ref|ZP_07346465.1| hypothetical protein CGSSp9vBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|303262854|ref|ZP_07348791.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|303265324|ref|ZP_07351234.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] gi|303266531|ref|ZP_07352418.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|303268350|ref|ZP_07354146.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|147757811|gb|EDK64823.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147763148|gb|EDK70089.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|147931021|gb|EDK82001.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225726271|gb|ACO22123.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|301801880|emb|CBW34601.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302597460|gb|EFL64555.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|302636052|gb|EFL66550.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|302638409|gb|EFL68876.1| hypothetical protein CGSSpBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|302642071|gb|EFL72422.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|302643982|gb|EFL74242.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|302645189|gb|EFL75426.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|126654396|ref|ZP_01726142.1| predicted transcription regulator, containing DNA-binding HTH domain [Bacillus sp. B14905] gi|126589164|gb|EAZ83345.1| predicted transcription regulator, containing DNA-binding HTH domain [Bacillus sp. B14905] Length = 68 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 RIR R ++QE L + +G++ Q + E G +IS+ Sbjct: 3 NRIRELRKSKKITQEDLSKVVGVSRQSIIAIESGKFNPSLELAYNISKAFNC 54 >gi|186472983|ref|YP_001860325.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195315|gb|ACC73279.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 204 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 27/77 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 27 VGEQIQRLRNERKMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 86 Query: 75 DVSPTVCSDISSEENNV 91 S + + Sbjct: 87 APQKAPDPIAVSGPHEI 103 >gi|28379435|ref|NP_786327.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28272274|emb|CAD65187.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 273 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RI R+ G+S KL +G+ + +EKG A RL ++ + Sbjct: 3 IDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYFDV 62 Query: 69 PISFF 73 ++ Sbjct: 63 STNYL 67 >gi|327473429|gb|EGF18849.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 225 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LG++ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQASIYQELGVSRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|312899714|ref|ZP_07759037.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0470] gi|311293146|gb|EFQ71702.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0470] Length = 76 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFF 74 RI+ R+ G++QE+ LG + + K+E G ++ GA L +E++ ++ FF Sbjct: 6 RIKAERIASGLTQEEAANKLGWSRAKYAKFENGKSKTGADDLADFAEIVGVTDMNIFF 63 >gi|332654336|ref|ZP_08420080.1| conserved domain protein [Ruminococcaceae bacterium D16] gi|332517422|gb|EGJ47027.1| conserved domain protein [Ruminococcaceae bacterium D16] Length = 87 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R G++QE+LGE +G + Q + E IS+V E I F F Sbjct: 3 NRIKELREQRGLTQEQLGELVGASRQAINAIETEKFEPSIWLAYDISKVFECAIEEVFLF 62 Query: 75 DVS 77 DVS Sbjct: 63 DVS 65 >gi|302672233|ref|YP_003832193.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396706|gb|ADL35611.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 364 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R M+Q +L + ++ Q + ++E G + L I++ I Sbjct: 6 ENIKRYRQQKCMTQSQLADVFNVSEQAISRWENGNTYPDITLLPAIADYFHVTID 60 >gi|290511290|ref|ZP_06550659.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] gi|289776283|gb|EFD84282.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] Length = 154 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 10 GQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 62 >gi|302381785|ref|YP_003817608.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192413|gb|ADK99984.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 67 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L LG++ Q V E G I+ V E PI F Sbjct: 3 NRLKVLRAERNWSQADLAAALGVSRQTVNALETGRYDPSLPLAFKIARVFEQPIESIFSD 62 Query: 77 SPTVC 81 + Sbjct: 63 AGASA 67 >gi|229105641|ref|ZP_04236274.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28] gi|229118501|ref|ZP_04247855.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3] gi|228665071|gb|EEL20559.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3] gi|228677777|gb|EEL32021.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28] Length = 79 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVPVE 65 Query: 72 FFFDVSPTVCSD 83 F + D Sbjct: 66 EIFTLVEGEEDD 77 >gi|170699072|ref|ZP_02890128.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170136030|gb|EDT04302.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 185 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 14/129 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD----VKVRQKIIELVRSIVSSEKKYR 134 + +++ PD + Y I D +R + L + Sbjct: 74 PRS----------VPWVTRPDERRTVYYAAGITDILVSPNMRSRFSILESHLAPGASSGE 123 Query: 135 TIEEECMVE 143 ++ + Sbjct: 124 RSVDDSDEQ 132 >gi|91772690|ref|YP_565382.1| MerR family transcriptional regulator [Methanococcoides burtonii DSM 6242] gi|91711705|gb|ABE51632.1| HTH-type transcriptional regulator [Methanococcoides burtonii DSM 6242] Length = 192 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR R M+ E+L + ++K EKG + L I+ L + F Sbjct: 7 VGENIRQFREDRSMTVEELANESQSNVELIEKLEKGELIPSLTPLLKIARALGVRLGTFL 66 Query: 75 DVSPTVCS--DISSEENNVMDF 94 D +P + S E NV+ F Sbjct: 67 DDTPQKGPIVNRSGEAKNVVRF 88 >gi|29377033|ref|NP_816187.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344499|gb|AAO82257.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 126 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R G+ Q +L E L + + YE + ++ I+E ++ D+ Sbjct: 6 KLKQLRTKKGIKQSELAEILHLRQSSISDYENNRSTPNPETIKKIAEYFNVSANYLLDIP 65 Query: 78 PTVCSDISSEENNVMDFISTPDGL 101 + + S ++ + D L Sbjct: 66 DKNDTKLDSTIKETIEELKNEDTL 89 >gi|148252332|ref|YP_001236917.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404505|gb|ABQ33011.1| transcriptional regulator, XRE family with shikimate kinase activity [Bradyrhizobium sp. BTAi1] Length = 306 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 10/113 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R + GMS++ L + GI+ + + + E G V L+ I+ + +P+ Sbjct: 23 QLGQRVRRMRGLAGMSRKVLAQVSGISERYIAQLESGKGNVSIVLLRRIANAINAPLDDI 82 Query: 74 FDVSPTVCS----------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 S S+ V D ++ L R F I + +R Sbjct: 83 IPGSEPSPDWPVIRDLLKKASPSQIAEVKDLLAGGASAPLRRSFSGIALIGLR 135 >gi|328544415|ref|YP_004304524.1| transcription regulator protein [polymorphum gilvum SL003B-26A1] gi|326414157|gb|ADZ71220.1| Putative transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 131 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI L R G+S +L LG+ +Q +E ++RL ++ VL ++ Sbjct: 19 RTLGERICLARDAAGLSTAQLARRLGVRTATLQAWESDRAEPRSNRLVLLAGVLGVSPTW 78 Query: 73 F 73 Sbjct: 79 L 79 >gi|306823918|ref|ZP_07457292.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309802457|ref|ZP_07696564.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium JCVIHMP022] gi|304552916|gb|EFM40829.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221057|gb|EFO77362.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium JCVIHMP022] Length = 408 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDDL 61 >gi|284921095|emb|CBG34160.1| putative phage DNA-binding protein [Escherichia coli 042] Length = 368 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++L RM +G+S E+L E +G T Q V K EKG R L+ IS L SF F Sbjct: 14 GDKLKLARMAVGLSCEELAEKIGKTKQFVSKLEKG-CRPSEQCLELISSALMIKSSFLF 71 >gi|282601374|ref|ZP_05981505.2| conserved domain protein [Subdoligranulum variabile DSM 15176] gi|282569350|gb|EFB74885.1| conserved domain protein [Subdoligranulum variabile DSM 15176] Length = 211 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 M+QE L E L +T Q V +E NR+ A L ++E L + + Sbjct: 1 MTQEDLAERLHVTRQAVSAWETEKNRLDAETLVALAEALGADV 43 >gi|228960769|ref|ZP_04122407.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048209|ref|ZP_04193778.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|229129788|ref|ZP_04258755.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|229147062|ref|ZP_04275422.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228636450|gb|EEK92920.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228653704|gb|EEL09575.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|228723196|gb|EEL74572.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|228798904|gb|EEM45880.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] Length = 194 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 11/117 (9%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 5 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 64 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 I++ L P+S V E V + F T + G++++R Sbjct: 65 WKITKGLSIPLSRLMVAGEPVAVARCGEGFAVDEGQAWHLETMFRYTKETGMEMHRA 121 >gi|212383451|ref|YP_002302334.1| hypothetical protein pRJ6_005 [Staphylococcus aureus] gi|211907413|gb|AAK73548.2|AF241888_1 unknown [Staphylococcus aureus] Length = 82 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R + SQ++L + +T Q + E G I++ L+ ++ F Sbjct: 16 NNIKHYRKEMNFSQQELANKVEVTRQTISLIELGKYNPTIKLCISIAKALQVDLNKLF 73 >gi|171741654|ref|ZP_02917461.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC 27678] gi|283455032|ref|YP_003359596.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1] gi|171277268|gb|EDT44929.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC 27678] gi|283101666|gb|ADB08772.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1] Length = 408 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDDL 61 >gi|126700771|ref|YP_001089668.1| putative phage DNA-binding protein [Clostridium difficile 630] gi|115252208|emb|CAJ70047.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 253 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R ++Q +L E GI+ + YE L +++ L+ + Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEKTI 60 Query: 73 F-FDVSPTVCSD 83 F FD+ V ++ Sbjct: 61 FYFDIENEVMTN 72 >gi|146302279|ref|YP_001196870.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156697|gb|ABQ07551.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 76 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G IR R G+SQ+ L + GI Q+ + E+ G L I+ L+ ++ Sbjct: 10 INLGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIANALDIELAD 69 Query: 73 F 73 Sbjct: 70 L 70 >gi|94309910|ref|YP_583120.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353762|gb|ABF07851.1| conserved hypothetical protein with lambda repressor-like DNA-binding domains [Cupriavidus metallidurans CH34] Length = 131 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 1/120 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + R G SQE L G+ + E+G V + +++ L S D Sbjct: 13 GRHLTWLRKQRGWSQEALSLESGLARSYLSGIERGTRNVALYNICTLADTLGVAPSVMLD 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + +P RY ++ D R + + R++ + + Sbjct: 73 FSSHCADAPVEPARAPFNPEISPAVQATLRYMTELSDTD-RDVVAGVARALARKQLRKIA 131 >gi|324009966|gb|EGB79185.1| helix-turn-helix protein [Escherichia coli MS 57-2] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQRQAM 85 >gi|317472844|ref|ZP_07932154.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] gi|316899686|gb|EFV21690.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] Length = 302 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R MSQEK+ E L ++ Q V K+E G ++ I+ + + I + Sbjct: 5 KLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDELLESE 64 Query: 78 PTV 80 Sbjct: 65 ERS 67 >gi|307610924|emb|CBX00541.1| phage repressor [Legionella pneumophila 130b] Length = 229 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 3/102 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI R G++++ L E G + ++ YE+G G + ++ +++ LE S+ Sbjct: 9 IGQRIMNERKAKGLTRKALAELTGELKTSRINNYERGDRTPGPTEIKLLADALEVSASYL 68 Query: 74 FDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ ++ ++ + Y +I D Sbjct: 69 MCLTDNREGKMTKSLGMGALIPVLDYKQAADPVTYIQKIKDD 110 >gi|296875924|ref|ZP_06899984.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296433086|gb|EFH18873.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 77 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 2 VGNKKIPNPVDINVGK--RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + NK I + +V K ++++ R+ M+Q L + +G+T Q + E G S Sbjct: 1 MYNKVIKTRKEKHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLC 60 Query: 60 QHISEVLESPISFFF 74 I + L+ + F Sbjct: 61 LAICKTLDKTLDQLF 75 >gi|281178569|dbj|BAI54899.1| conserved hypothetical protein [Escherichia coli SE15] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQRQAM 85 >gi|257877872|ref|ZP_05657525.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257812038|gb|EEV40858.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 110 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R+ +Q+++ + LGIT +E N + ++E+ + F Sbjct: 2 LGERLRTLRLRTNQTQQQIADQLGITRAAYSHFENDRNEPDGETIVKLAEIFQVSTDFL 60 >gi|227888084|ref|ZP_04005889.1| helix-turn-helix domain protein [Escherichia coli 83972] gi|227834930|gb|EEJ45396.1| helix-turn-helix domain protein [Escherichia coli 83972] gi|315295536|gb|EFU54862.1| helix-turn-helix protein [Escherichia coli MS 153-1] Length = 367 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +++L RM +G+S E+L E +G T Q V K EKG R L+ IS L SF F Sbjct: 13 GDKLKLARMAVGLSCEELAEKIGKTKQFVSKLEKG-CRPSEQCLELISSALMIKSSFLF 70 >gi|225619797|ref|YP_002721054.1| putative transcriptional regulator [Brachyspira hyodysenteriae WA1] gi|225214616|gb|ACN83350.1| putative transcriptional regulator [Brachyspira hyodysenteriae WA1] Length = 139 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R + ++ E GI+ + +Q E G + + L I+ L PI F Sbjct: 39 VGNNIRAIRKSQTKTISEIAEMSGISAKYLQSVEVGKRNISITNLNKIANALNVPIGILF 98 >gi|225574085|ref|ZP_03782696.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM 10507] gi|225038685|gb|EEG48931.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM 10507] Length = 153 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE + E LG++ Q + K+E + + ++ + + Sbjct: 1 MNLGNSLFHARKKRGLSQEDVAEKLGVSRQTISKWETNETVPDIYQSKRMAMLYNMSLDE 60 Query: 73 F--FDVSPTVCSDISSEENNVMD 93 FD+ ++ + N + Sbjct: 61 LIDFDIDIREIQEVIDKTNEKTE 83 >gi|218704902|ref|YP_002412421.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|293404913|ref|ZP_06648905.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412] gi|298380556|ref|ZP_06990155.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302] gi|300900069|ref|ZP_07118264.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|331646712|ref|ZP_08347815.1| putative oxidoreductase/putative repressor [Escherichia coli M605] gi|218431999|emb|CAR12884.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|291427121|gb|EFF00148.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412] gi|298277998|gb|EFI19512.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302] gi|300356415|gb|EFJ72285.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|323187286|gb|EFZ72597.1| helix-turn-helix family protein [Escherichia coli RN587/1] gi|330911245|gb|EGH39755.1| transcriptional regulator yidN, Cro/CI family [Escherichia coli AA86] gi|331045464|gb|EGI17591.1| putative oxidoreductase/putative repressor [Escherichia coli M605] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQRQAM 85 >gi|215486671|ref|YP_002329102.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312969257|ref|ZP_07783462.1| helix-turn-helix family protein [Escherichia coli 2362-75] gi|215264743|emb|CAS09124.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312286144|gb|EFR14059.1| helix-turn-helix family protein [Escherichia coli 2362-75] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQRQAM 85 >gi|206560147|ref|YP_002230911.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036188|emb|CAR52084.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 240 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 60 VAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTM 119 Query: 71 SFFFDVSPTVCS 82 +F D S Sbjct: 120 QYFIDTPTEARS 131 >gi|167745559|ref|ZP_02417686.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] gi|167654871|gb|EDR99000.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] Length = 323 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R MSQEK+ E L ++ Q V K+E G ++ I+ + + I + Sbjct: 26 KLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDELLESE 85 Query: 78 PTV 80 Sbjct: 86 ERS 88 >gi|164687004|ref|ZP_02211032.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM 16795] gi|164603889|gb|EDQ97354.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM 16795] Length = 71 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 31/67 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R + ++Q ++G +G++ Q + + E+G + I++VL + F Sbjct: 5 NRLKEYRAKIKVNQTEMGNLVGVSRQTISQIERGDYSPSVTLALKIAKVLNVSVEEIFSY 64 Query: 77 SPTVCSD 83 ++ Sbjct: 65 EEGEENE 71 >gi|153954623|ref|YP_001395388.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855101|ref|YP_002472223.1| hypothetical protein CKR_1758 [Clostridium kluyveri NBRC 12016] gi|146347481|gb|EDK34017.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568825|dbj|BAH06809.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 171 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 14/107 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R GM+Q++LG+ ++ + + E G + L+ I + L++P +F Sbjct: 2 IGTAIKEAREEKGMTQQELGQMSFLSDKTISAIETGRRNLTKDNLRIICKELDNPFIYF- 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 S+++ + N+ + L+R VR+K++E Sbjct: 61 ----QAASEVTGDVFNIN--WLDGEAADLHRA-------AVREKVVE 94 >gi|91210676|ref|YP_540662.1| hypothetical protein UTI89_C1653 [Escherichia coli UTI89] gi|117623680|ref|YP_852593.1| hypothetical protein APECO1_579 [Escherichia coli APEC O1] gi|218558366|ref|YP_002391279.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|237705412|ref|ZP_04535893.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91072250|gb|ABE07131.1| hypothetical protein YdcN [Escherichia coli UTI89] gi|115512804|gb|ABJ00879.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218365135|emb|CAR02845.1| putative DNA-binding transcriptional regulator [Escherichia coli S88] gi|222033183|emb|CAP75923.1| Uncharacterized HTH-type transcriptional regulator [Escherichia coli LF82] gi|226900169|gb|EEH86428.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294493300|gb|ADE92056.1| DNA-binding protein [Escherichia coli IHE3034] gi|307627046|gb|ADN71350.1| putative DNA-binding transcriptional regulator [Escherichia coli UM146] gi|312946016|gb|ADR26843.1| putative DNA-binding transcriptional regulator [Escherichia coli O83:H1 str. NRG 857C] gi|315289769|gb|EFU49159.1| helix-turn-helix protein [Escherichia coli MS 110-3] gi|323952682|gb|EGB48551.1| helix-turn-helix protein [Escherichia coli H252] gi|323956844|gb|EGB52577.1| helix-turn-helix protein [Escherichia coli H263] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQRQAM 85 >gi|54310635|ref|YP_131655.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46915078|emb|CAG21853.1| Hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 121 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FDV 76 +IR R ++Q + + LG+ Q E G S L I+++ P+ +F ++ Sbjct: 11 KIREARERKDITQVAMAKALGLARQTYLDLESGKTEPRISTLVSIADITGRPLIWFIYED 70 Query: 77 SPTVCSDISSEENNVMDFIS 96 + S+ ++ ++D + Sbjct: 71 EGLISSEDKNDIQVLLDLFA 90 >gi|83952999|ref|ZP_00961721.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] gi|83841967|gb|EAP81135.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] Length = 183 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+R+R R G+SQ +L G+T + EK + L+ + + + ++ Sbjct: 1 MDIGQRLRSIREERGLSQRELATKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAE 60 Query: 73 FFDVSPTVCS 82 FF S Sbjct: 61 FFSTLEDTQS 70 >gi|330810189|ref|YP_004354651.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378297|gb|AEA69647.1| putative Transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 187 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V + +R R +SQ L E G++ + + E G V + L ++E L+ S Sbjct: 14 HVSQNVRRLRHAAELSQTALAELSGVSRRMLVAIEAGEKNVSLTTLDRVAEALDVAFSDL 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +E + + L + Sbjct: 74 IQAPDARDPSRINELAWAGTIAGSK-AVLLAKA 105 >gi|296877340|ref|ZP_06901380.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431860|gb|EFH17667.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 113 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q +L + LGI +E+G L ++++L + + Sbjct: 5 ERLKELRKQAHLTQVELAKQLGIGQSSYADWERGKKNPTQENLIRLAQILNVSVDYLVGN 64 Query: 77 SPTVCSDISSEE 88 S ++ + E Sbjct: 65 SEAKSEELDNIE 76 >gi|227523447|ref|ZP_03953496.1| possible DNA-binding protein [Lactobacillus hilgardii ATCC 8290] gi|227089374|gb|EEI24686.1| possible DNA-binding protein [Lactobacillus hilgardii ATCC 8290] Length = 117 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ G SQ+K+ + L +T Q + +E G +R L +S+V + P+ F + Sbjct: 7 QLKKARIKKGYSQQKVADELQVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVKDN 66 Query: 78 PTVCSDISSEENNVMDFI 95 + I S+ + F Sbjct: 67 HSFDLQIESDREEFLRFF 84 >gi|213031130|emb|CAR31467.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|195977452|ref|YP_002122696.1| transcriptional regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974157|gb|ACG61683.1| transcriptional regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 389 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ S ++ E L ++ Q V KYEKG L + + L+ P FFF Sbjct: 9 GERLKEARLFNKKSITQIAEFLNVSKQMVSKYEKGRATPSEESLGILEKELQFPRDFFFG 68 Query: 76 VSPTVCSDISS 86 S + Sbjct: 69 NDNFSLSSTGT 79 >gi|254383920|ref|ZP_04999267.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194342812|gb|EDX23778.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 76 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 17 KRIRLRR-MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR+ R M+Q L E +G+T Q V EKG I+ V P+ F Sbjct: 8 NRIRVLRFEHAEMTQADLAERIGVTRQTVIAIEKGRYSPSLETAFRIARVFAVPLEQVFQ 67 Query: 76 VSPTVCS 82 S + Sbjct: 68 YSDEEGT 74 >gi|170696008|ref|ZP_02887146.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] gi|170139088|gb|EDT07278.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] Length = 330 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 17/131 (12%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 32 GEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQI 91 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY-------FIQIDD 112 + L P++ V D ++ + + + D L R F Q Sbjct: 92 AATLNCPLA-------EVIGDETTASAEWLLIRELLHGRDQAALQRARIALAEMFAQAPR 144 Query: 113 VKVRQKIIELV 123 R+ I L+ Sbjct: 145 DPHRKDRIALI 155 >gi|110633833|ref|YP_674041.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284817|gb|ABG62876.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 198 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 IR R G++ L LG + + + E+G++ + L+ ++ + P+SFF Sbjct: 24 IRRLRKARGLTLAGLASQLGRSVGWLSQVERGISLPSVADLRALANHFKVPVSFF 78 >gi|270208634|ref|YP_003329405.1| predicted transcriptional regulator [Sinorhizobium meliloti] gi|76880908|gb|ABA56078.1| predicted transcriptional regulator [Sinorhizobium meliloti] Length = 194 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ + +L G++ + K E+G L I+ V + FF Sbjct: 15 IGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHFF 74 Query: 75 DVSPTV 80 + Sbjct: 75 NADKEE 80 >gi|28869772|ref|NP_792391.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853017|gb|AAO56086.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 209 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 11/103 (10%) Query: 6 KIPNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 P+P ++ +G +I+ +R + + GI+ + K E L + Sbjct: 13 NEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRL 72 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +VL P+S F S + +GL++ R Sbjct: 73 CDVLGMPMSKLFSQYDQQGSSAL--------LVRADEGLEVVR 107 >gi|15679328|ref|NP_276445.1| hypothetical protein MTH1328 [Methanothermobacter thermautotrophicus str. Delta H] gi|3219928|sp|O27383|Y1328_METTH RecName: Full=Uncharacterized HTH-type transcriptional regulator MTH_1328 gi|2622434|gb|AAB85806.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 69 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 24/49 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 IR R LG++QE+L E +G+T Q + EKG I+ L Sbjct: 5 IREHRKELGLTQEELAERVGVTRQTIIALEKGRYSPSLILAHRIARALG 53 >gi|86137152|ref|ZP_01055730.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85826476|gb|EAQ46673.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 187 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G+S K + G++ + + E+G + + L I++ P++ Sbjct: 6 IGANLRKIRNAAGLSLSKAADLTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALI 65 Query: 75 DVSPTVCSDIS 85 D + Sbjct: 66 GAPDADQPDPA 76 >gi|332366115|gb|EGJ43871.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 225 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|332363975|gb|EGJ41754.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 225 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|331091802|ref|ZP_08340634.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402701|gb|EGG82268.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium 2_1_46FAA] Length = 106 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+++R+ R+ ++QE + + + E +V S L I L + + + Sbjct: 9 IGEKLRIIRLSKNLTQEYIANVADVNTSHISNIENNRVKVSLSTLVQICNALNTTVDY 66 >gi|309779373|ref|ZP_07674135.1| DNA binding protein [Ralstonia sp. 5_7_47FAA] gi|308921931|gb|EFP67566.1| DNA binding protein [Ralstonia sp. 5_7_47FAA] Length = 198 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 17 VGAKLQTLRQARKLSLDELSRRAGVSKSMLSQVERNLANPTVAVLWRLATALGVGLADF- 75 Query: 75 DVSPTVCSDISSE 87 +SP +D + Sbjct: 76 -LSPEGAADAAPA 87 >gi|294678852|ref|YP_003579467.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477672|gb|ADE87060.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 478 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 10/109 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+++ R LG++Q ++ LG++ + E L ++EV + IS Sbjct: 10 IGQRLKVLRQSLGLTQAQMAAELGVSASYITLIEADQRPASVKLLMRLAEVYDLNIS--- 66 Query: 75 DVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++SP + ++S+ D + + + + +I VR Sbjct: 67 ELSPAADAQLASDFAAALKTPAAGADAVPRAEIEAVLQASPRIAAAFVR 115 >gi|262282768|ref|ZP_06060536.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262262059|gb|EEY80757.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 225 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|251778290|ref|ZP_04821210.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082605|gb|EES48495.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 183 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + +G RI+ RR L ++ +++G+ +G+ +Q+YEKG + ++ ++ I++ + Sbjct: 13 LEIGNRIQERRKELKLTLQEVGDIVGVASSTIQRYEKGLIAKMKLPVIESIAKAINVNPV 72 Query: 72 FFFDVSPTVCSDISSEE 88 + ++++ E Sbjct: 73 WLIRKDAKKETELADFE 89 >gi|229170545|ref|ZP_04298193.1| Transcriptional regulator [Bacillus cereus AH621] gi|228612894|gb|EEK70071.1| Transcriptional regulator [Bacillus cereus AH621] Length = 65 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ G++Q++L + + +T Q + E HI++ L+ + F Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLF 61 >gi|282933777|ref|ZP_06339130.1| XRE family transcriptional regulator [Lactobacillus jensenii 208-1] gi|313472134|ref|ZP_07812626.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 1153] gi|239529503|gb|EEQ68504.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 1153] gi|281302079|gb|EFA94328.1| XRE family transcriptional regulator [Lactobacillus jensenii 208-1] Length = 122 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESP 69 +D+ +G IR RR + ++QE L E G++ + + E+ G + ++ I++ L Sbjct: 1 MDMCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMD 60 >gi|218694976|ref|YP_002402643.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|300823240|ref|ZP_07103372.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|331667806|ref|ZP_08368670.1| putative oxidoreductase/putative repressor [Escherichia coli TA271] gi|331677280|ref|ZP_08377962.1| putative oxidoreductase/putative repressor [Escherichia coli H591] gi|218351708|emb|CAU97423.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|300524204|gb|EFK45273.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|323170076|gb|EFZ55731.1| helix-turn-helix family protein [Escherichia coli LT-68] gi|331065391|gb|EGI37286.1| putative oxidoreductase/putative repressor [Escherichia coli TA271] gi|331075131|gb|EGI46444.1| putative oxidoreductase/putative repressor [Escherichia coli H591] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 PATPSVYDPQQHAM 85 >gi|188026565|ref|ZP_02962597.2| hypothetical protein PROSTU_04732 [Providencia stuartii ATCC 25827] gi|188019447|gb|EDU57487.1| hypothetical protein PROSTU_04732 [Providencia stuartii ATCC 25827] Length = 119 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 IR +R+ LG++ LG L ++ QQ+ +YE+G+ + +L+ L F Sbjct: 39 IRQKRIELGLNGSDLGRLLNVSQQQISRYERGITSLTLHQLEQFLRALAVSWESF 93 >gi|157149913|ref|YP_001449951.1| putative transcriptional repressor [Streptococcus gordonii str. Challis substr. CH1] gi|157074707|gb|ABV09390.1| putative transcriptional repressor [Streptococcus gordonii str. Challis substr. CH1] Length = 225 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|156936528|ref|YP_001440443.1| hypothetical protein ESA_pESA2p06574 [Cronobacter sakazakii ATCC BAA-894] gi|260585153|ref|YP_003212727.1| hypothetical protein Ctu_2p00150 [Cronobacter turicensis z3032] gi|156534782|gb|ABU79607.1| hypothetical protein ESA_pESA2p06574 [Cronobacter sakazakii ATCC BAA-894] gi|260219335|emb|CBA34688.1| hypothetical protein Ctu_2p00150 [Cronobacter turicensis z3032] Length = 118 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V KR++ R G+SQEKL + + + + ++ YE G + +++ L P Sbjct: 2 VPKRLKEAREAAGISQEKLAQLVDLESVNSRSKISNYEAGRFAPSFEFVCRVAKALGYPE 61 Query: 71 SFFFDVSPTVCS 82 +F+ VS Sbjct: 62 YYFYTVSDATAQ 73 >gi|134045852|ref|YP_001097338.1| XRE family transcriptional regulator [Methanococcus maripaludis C5] gi|132663477|gb|ABO35123.1| transcriptional regulator, XRE family [Methanococcus maripaludis C5] Length = 66 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 RI+ R M+QE+LG+ +G+ + + EKG IS+ L++ I F F+ Sbjct: 4 RIKEYRAKYDMTQEELGKIVGVRRETISFLEKGKYNPSLKLAHSISKALDTTIDELFIFE 63 Query: 76 VSP 78 Sbjct: 64 DDE 66 >gi|116049312|ref|YP_791886.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584533|gb|ABJ10548.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 216 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V +R R+ G+SQE L ++ + + E G V S L I+ L F Sbjct: 44 HVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRIAAALGV---LF 100 Query: 74 FDVSPTVCSDIS 85 D+ +D S Sbjct: 101 PDLVQAPATDRS 112 >gi|193062540|ref|ZP_03043634.1| DNA-binding protein [Escherichia coli E22] gi|260843745|ref|YP_003221523.1| putative DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|192931662|gb|EDV84262.1| DNA-binding protein [Escherichia coli E22] gi|257758892|dbj|BAI30389.1| predicted DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|323163586|gb|EFZ49411.1| helix-turn-helix family protein [Escherichia coli E128010] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 PATPSVYDPQQHAM 85 >gi|194336961|ref|YP_002018755.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] gi|194309438|gb|ACF44138.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] Length = 104 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ I+ R ++QE LG+ +G+ Q+ + E + V L + L++ + F Sbjct: 34 IGQAIKQTRQERNLTQEALGKLIGVQKSQISRIESNASNVTIDTLMRVFNALQAKVKF 91 >gi|331014513|gb|EGH94569.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 201 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 11/103 (10%) Query: 6 KIPNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 P+P ++ +G +I+ +R + + GI+ + K E L + Sbjct: 5 NEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRL 64 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +VL P+S F S + +GL++ R Sbjct: 65 CDVLGMPMSKLFSQYDQQGSSAL--------LVRADEGLEVVR 99 >gi|322410846|gb|EFY01754.1| Transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 303 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++R R+ G+S+E+L G+ ++ +Q+ + E G + +++ I++ LE + + Sbjct: 4 HFGEKVRGLRLEKGISREELCGDEAELSVRQLARIELGQSIPSLAKVIFIAKALEVSVGY 63 Query: 73 FFDVS 77 D + Sbjct: 64 LTDGA 68 >gi|297201607|ref|ZP_06919004.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|297147931|gb|EDY55056.2| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 202 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 15/127 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P+D + +R R G+S +L + GI + + E L Sbjct: 15 MSDSPPPRLPLD-WIAASLRRERTRAGLSLSELAKRAGIAKSTLSQLEAAGGNPSVETLW 73 Query: 61 HISEVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + L P S + S + ++++T L Sbjct: 74 ALGVALGVPFSALVEPPAPSVRVIRAGQGPSVASEKAEYMAT-----LLSA----SPPGA 124 Query: 116 RQKIIEL 122 R+ I L Sbjct: 125 RRDIYHL 131 >gi|262197484|ref|YP_003268693.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080831|gb|ACY16800.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 131 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G+ +R R G++QE+ E +G++ + + E+G + QHI+ L Sbjct: 1 MNHELAATMGREMRRARTAQGLTQERAAEAIGVSVEFYARVERGKSHPSVETFQHIASTL 60 Query: 67 ESPISFFFDVSPTVCS 82 E + + Sbjct: 61 EVSADVLLGLDGERGA 76 >gi|227549950|ref|ZP_03979999.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227077966|gb|EEI15929.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] Length = 143 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPI 70 +R+R R + G+SQ +L E G++ + E+ S + I+ L P Sbjct: 19 ERLRALREMRGLSQRRLAELAGVSRSLISNLERNQYNTARSADPTLSTVYRIAHALHVPP 78 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 S +V +E+ + Sbjct: 79 VALLPASDSVVKARCAEDAAAV 100 >gi|254976735|ref|ZP_05273207.1| putative phage DNA-binding protein [Clostridium difficile QCD-66c26] gi|255094119|ref|ZP_05323597.1| putative phage DNA-binding protein [Clostridium difficile CIP 107932] gi|255315870|ref|ZP_05357453.1| putative phage DNA-binding protein [Clostridium difficile QCD-76w55] gi|255518531|ref|ZP_05386207.1| putative phage DNA-binding protein [Clostridium difficile QCD-97b34] gi|255651650|ref|ZP_05398552.1| putative phage DNA-binding protein [Clostridium difficile QCD-37x79] Length = 254 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R ++Q +L E GI+ + YE L +++ L+ + Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEKTI 60 Query: 73 F-FDVSPTVCSD 83 F FD+ V ++ Sbjct: 61 FYFDIENEVMTN 72 >gi|225571494|ref|ZP_03780490.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM 15053] gi|225159571|gb|EEG72190.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM 15053] Length = 73 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K+++L R+ + MSQE L + +T Q + E G I L ++ F Sbjct: 4 KKMKLARINMDMSQEDLARHVDVTRQTIGMIEAGKFNPSLRLCLAICRALGVTLNDLF 61 >gi|154484823|ref|ZP_02027271.1| hypothetical protein EUBVEN_02541 [Eubacterium ventriosum ATCC 27560] gi|149733776|gb|EDM49895.1| hypothetical protein EUBVEN_02541 [Eubacterium ventriosum ATCC 27560] Length = 40 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 25/37 (67%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 +G I++ R +G++QE+L +G+T Q V ++E GV Sbjct: 4 IGNNIKIIRKQIGLTQEELALHIGVTPQAVSRWENGV 40 >gi|116871710|ref|YP_848491.1| transcriptional repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740588|emb|CAK19708.1| transcriptional repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 68 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 + IR R ++Q+++ + L ++ +YE G A+ L I++ + + + D Sbjct: 4 RNIRSIREDNDITQQQMAKLLNVSQNTYSQYETGKIEWTATALIKIADYFDVSVDYLLD 62 >gi|52842273|ref|YP_096072.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629384|gb|AAU28125.1| hypothetical phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 207 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 2/93 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +G RI+ R + +L E G + Q++ +E+G + + L Sbjct: 10 DIKLKIGLRIKESRKNKKFTAVQLAEVTGFSAQRISNWERGTRTPRFKDAEILGSALGVS 69 Query: 70 ISF--FFDVSPTVCSDISSEENNVMDFISTPDG 100 ++ F D+ D + +++ S +G Sbjct: 70 PTWLLFLDIDHKPMKDHPFQTIPIINASSKIEG 102 >gi|71281165|ref|YP_268401.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71146905|gb|AAZ27378.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 185 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 60/131 (45%), Gaps = 14/131 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++L R G S + + ++ + + E+G + +RL I+ P+S+FF Sbjct: 9 IGSQLKLARTNKGWSLDIASKNTNVSKAMLGQIERGESSPTVARLWDIATGFHLPLSYFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPD-GLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 ++ E+++V + + G+ ++ F DV+ + ++ L ++ S ++ Sbjct: 69 ---------LAIEDDDVSKNMLNSEAGISISTLFP--FDVETKSEVFSL--TLASLHQQI 115 Query: 134 RTIEEECMVEQ 144 + ++E Sbjct: 116 SAPHNDGVIEH 126 >gi|313905588|ref|ZP_07838950.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469535|gb|EFR64875.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 58 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 25/45 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++++L R GM+QE L E LG++ Q V K+E G S L Sbjct: 5 EKLQLIRKSKGMTQEDLAEKLGVSRQAVAKWESGQVYPDISNLIQ 49 >gi|302386036|ref|YP_003821858.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196664|gb|ADL04235.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 204 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ V K+E G L+ IS+V I Sbjct: 5 EKLQQLRKQNNLTQEQLAEQLYVSRTAVSKWESGKGYPNIESLKCISKVFAVSIDELLSG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + S +N+ S G+ F I Sbjct: 65 NELITLAQSENRSNISKLYSLMYGILDVMAFAFI 98 >gi|291557516|emb|CBL34633.1| Helix-turn-helix [Eubacterium siraeum V10Sc8a] Length = 221 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + L R G++Q+++ LGI + YEKG + G L ++ + SP Sbjct: 9 LSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRKCGLEFLVKAADYYNVSTDYLLGRSP 68 Query: 79 TVCSDISSEEN 89 I +E + Sbjct: 69 VSNGGIITESD 79 >gi|293400092|ref|ZP_06644238.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306492|gb|EFE47735.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 247 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG I R ++Q+ L + L ++ + V K+E+GV+ L ++ + + ++ Sbjct: 9 VGSYISELRKAKKLTQKDLADKLYVSDKTVSKWERGVSMPSIPLLMPLANLFDITVT 65 >gi|307729113|ref|YP_003906337.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583648|gb|ADN57046.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1003] Length = 330 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 17/131 (12%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 32 GEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQI 91 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY-------FIQIDD 112 + L P++ V D ++ + + + D L R F Q Sbjct: 92 AATLNCPLA-------EVIGDETTASAEWLLIRELLHGRDQAALQRARMTLAEMFAQAPR 144 Query: 113 VKVRQKIIELV 123 R+ I L+ Sbjct: 145 DPHRKDRIALI 155 >gi|288560691|ref|YP_003424177.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543401|gb|ADC47285.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 186 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ ++G RIR R + ++ E + L + + YE G+ + AS L I+ + + Sbjct: 6 DVNKDIGMRIRELRELSDITTEDMANELDVDEETYISYEDGIIDIPASFLYQIAHIFKVD 65 Query: 70 IS 71 ++ Sbjct: 66 LA 67 >gi|218704103|ref|YP_002411622.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|218431200|emb|CAR12076.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|323976890|gb|EGB71978.1| peptidase S24 [Escherichia coli TW10509] Length = 230 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + L +I++ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIA 60 Query: 72 FFF 74 F Sbjct: 61 DLF 63 >gi|220908355|ref|YP_002483666.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864966|gb|ACL45305.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 224 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R SQ L LGI+ Q V +E G I+ + I F Sbjct: 3 NRLKELRQRRSWSQADLARSLGISRQAVNGFESGKFDPSLEMAFKIARLFNVAIEDVF 60 >gi|170017663|ref|YP_001728582.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169804520|gb|ACA83138.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 76 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 RI+ R M+Q L E L +T Q + EKG I+ I F F+ Sbjct: 4 RIQELRKARQMTQADLAEALAVTRQTIISLEKGKYNASLFLAYDIAHFFGLSIEEVFIFE 63 Query: 76 VSPTVCSDISSEE 88 T + + Sbjct: 64 NGETDDKKNTHQS 76 >gi|116491838|ref|YP_803573.1| XRE family transcriptional regulator [Pediococcus pentosaceus ATCC 25745] gi|116101988|gb|ABJ67131.1| Transcriptional regulator, xre family [Pediococcus pentosaceus ATCC 25745] Length = 190 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 9/84 (10%), Positives = 40/84 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R ++Q+++ + +T Q + ++E+G L+ ++++ + Sbjct: 1 MSIGTTLQKIRQARDLTQQEVATQMYVTRQTISRWEQGKTMPNIYALKDLAQLYNVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 P+ + + + +++++ Sbjct: 61 LVARHPSNSKEEAGHKMKKINWLA 84 >gi|325290665|ref|YP_004266846.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966066|gb|ADY56845.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 213 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG---ASRLQHISEVLESPISFFF 74 + R G+SQ++L + G+ + +Q YE+ N + AS LQ +++ L I F Sbjct: 153 NLSRLRKARGLSQKELAKTSGVALRMIQLYEQKQNDINKAQASSLQSLAQALGCKIEDLF 212 Query: 75 D 75 + Sbjct: 213 E 213 >gi|323126868|gb|ADX24165.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 113 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R++L R ++Q ++ + LG++ Q +E+GV + L +S + + Sbjct: 5 ERLKLLRTQAKLTQSQIAKKLGVSQQAYGDWERGVKKPTQDNLVKLSNIFNVSVD 59 >gi|319744698|gb|EFV97043.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 168 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 12 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 66 >gi|296271002|ref|YP_003653634.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093789|gb|ADG89741.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 406 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFFF 74 G ++R R LG SQE+L G++ ++K E G R+ L+ ++ L +F Sbjct: 8 GAQLRALRQQLGWSQEELANRAGLSTGVIKKIEGGGTARM--ETLRALARALGVHTVWFV 65 Query: 75 DVSPTVCSDISSEENNVMD 93 + + + + D Sbjct: 66 RPGSPAPTVDNGNDAVLAD 84 >gi|254444938|ref|ZP_05058414.1| Helix-turn-helix domain protein [Verrucomicrobiae bacterium DG1235] gi|198259246|gb|EDY83554.1| Helix-turn-helix domain protein [Verrucomicrobiae bacterium DG1235] Length = 369 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 18 RIRLRRMILGMSQEKL----GEC-LGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R+ R +LG+S + L E L IT Q + KYEKG + L +S+VL+ PI F Sbjct: 12 RLNQARRLLGLSLDDLVASLAEAGLSITKQSLSKYEKGEIAPSSQSLAALSKVLKKPIDF 71 Query: 73 FFDVSPTVCSDIS 85 FF DI Sbjct: 72 FFQKGAIKLVDID 84 >gi|168178699|ref|ZP_02613363.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC 2916] gi|182670340|gb|EDT82314.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC 2916] Length = 67 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++IR+ R ++Q +L + +T QV K EKG R+ L+ I++ L I Sbjct: 1 MYTGEKIRILREKYKITQYELSKKTNLTQSQVSKIEKGKRRITDVDLKEIAKALHVTIQE 60 Query: 73 FFD 75 + Sbjct: 61 LLE 63 >gi|197120409|ref|YP_002140836.1| helix-turn-helix domain-containing protein [Geobacter bemidjiensis Bem] gi|197089769|gb|ACH41040.1| helix-turn-helix domain protein [Geobacter bemidjiensis Bem] Length = 307 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR---VGASRLQHISEVLESPISF 72 G RIR R ++Q + +G+T + ++E NR + Q +++ LE P+ Sbjct: 20 GVRIRTVREAKRLTQLYVANVVGVTTDTISRWEN--NRYPSIKRENAQKLADALEVPLGD 77 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 V D E T Sbjct: 78 ILRDEAPVPEDEPGTEFPPPSPRRTK 103 >gi|124008859|ref|ZP_01693546.1| repressor [Microscilla marina ATCC 23134] gi|123985547|gb|EAY25439.1| repressor [Microscilla marina ATCC 23134] Length = 120 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 6/114 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R +SQ+++ +GI Q ++E G + ++ I++ L +S F Sbjct: 5 KKLKDIRSKKSLSQKEVALSVGIDRGQYSRFENGKAEPSLATIKKIAQALNVKLSDLFAE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR---YFIQIDDVKVRQKIIE-LVRSI 126 + + DI S + +++ I + L + + ID +++ + L +I Sbjct: 65 NDEL--DIDSYDKTLVEKIQLIEELDEAQKQSLYTMIDTAVAHKRLKDTLANAI 116 >gi|110802950|ref|YP_698753.1| helix-turn-helix domain-containing protein [Clostridium perfringens SM101] gi|110683451|gb|ABG86821.1| DNA-binding protein [Clostridium perfringens SM101] Length = 433 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ ++L IT Q+ E G + L++I+ L + + + Sbjct: 6 LGEKIKRRRKELNMTLKELAGE-RITPGQISLVESGRSNPSMDLLEYIAITLNTSVEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF--IQIDDVKVRQKIIELVRSIVSSEKK 132 + T I + + D ++ F I I +++ + Sbjct: 65 ETEKTQAEKICLYYEQIAESAILNDDIKKGEKFIEYAIYYANKYDLIYRKAKNLALKAEM 124 Query: 133 YRTIEEECMVEQ 144 Y EE + +Q Sbjct: 125 YLKSEEYLLAQQ 136 >gi|21229281|ref|NP_635203.1| transcriptional regulator [Methanosarcina mazei Go1] gi|20907859|gb|AAM32875.1| transcriptional regulator [Methanosarcina mazei Go1] Length = 186 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ +KI + R+R R + +S EK+ E L ++ + +KYE G + AS L Sbjct: 1 MIMQEKI-----KEIASRVRELRELSEISVEKMAEYLQVSKEIYEKYENGTEDIPASILF 55 Query: 61 HISEVLESPISFFFDVSPTVCS 82 I+ L+ ++ + Sbjct: 56 EIAHRLQVDMATLLTGEEPRMN 77 >gi|152968233|ref|YP_001364017.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362750|gb|ABS05753.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 70 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R G +Q L + L ++ Q V E G ++ +LE PI F Sbjct: 3 NRIRALRTERGWTQAALADLLDVSRQTVNALETGRYDPSLPLAFRLARLLERPIEEIF 60 >gi|317057144|ref|YP_004105611.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449413|gb|ADU22977.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 258 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I R G+SQ +L E LG + E G + S + ++E + P+ Sbjct: 12 EKIVALRTERGLSQNQLAEALGASRTHYNGIEHGKATITNSYINMLAEFYDVPV 65 >gi|281492427|ref|YP_003354407.1| phage XRE family regulator [Lactococcus lactis subsp. lactis KF147] gi|281376091|gb|ADA65582.1| Phage protein, regulator, Xre family [Lactococcus lactis subsp. lactis KF147] Length = 228 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFFD 75 RI+ R+ G++Q + + +GI+ + YE G ++ +++ + S+ Sbjct: 10 NRIKELRIEKGVTQSTVAKAIGISQGMLTNYETGKRSPRDFKVWQDLADYFDVTTSYIMG 69 Query: 76 VSP 78 S Sbjct: 70 TSD 72 >gi|255009477|ref|ZP_05281603.1| hypothetical protein Bfra3_10082 [Bacteroides fragilis 3_1_12] gi|313147247|ref|ZP_07809440.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136014|gb|EFR53374.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 103 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+ +R RR L ++Q++L E +G + + EKG + S I+ L Sbjct: 44 GEILRDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARALGI 96 >gi|81427908|ref|YP_394907.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609549|emb|CAI54595.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 103 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 18/106 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 + + IR R LG++ E+L E G ++ + + E+G V+ + +L I+E L + F Sbjct: 5 ISQMIREHRKQLGLTIEELAEKSGSSYSFISRIERGEVDNLKIKKLNDIAEALGIELIDF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 F +S L+L Y Q+ + K R+++ Sbjct: 65 FGDP----------------ALSGAQTLKLVHYLTQLPEDK-REEV 93 >gi|328954922|ref|YP_004372255.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328455246|gb|AEB06440.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 67 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 27/52 (51%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ R G++Q+ + + LGI+ Q YE +R+ + + + +L+ I Sbjct: 4 LKEVRKARGLTQKDVADHLGISRQTYSGYENEQDRMTIGQAKSVCAMLKCEI 55 >gi|310826476|ref|YP_003958833.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] gi|308738210|gb|ADO35870.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] Length = 148 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G + R G+SQE++ E LG++ Q + K+E + + ++++ + Sbjct: 1 MTLGNSLYKARKRTGLSQEEVAEKLGVSRQTISKWETNETLPDIRQSKQMAQLYHLSLDE 60 Query: 73 F--FDVSPTVCSDISSEENN 90 FDV ++ N Sbjct: 61 LIDFDVDVKEIEEMIEHANE 80 >gi|260655689|ref|ZP_05861162.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260629606|gb|EEX47800.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 123 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G R+R R ++Q++L E ++ +Q E L +++ LE + Sbjct: 1 MSFGLRLRSLRKAHQLTQQQLAEVTEVSRIYIQALESNRRSPSMKLLHKLADALEVDPAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + P+ S E + P+ L+ Sbjct: 61 LLEEFPSERSGRLQLE----ELFQRPEELE 86 >gi|290894051|ref|ZP_06557025.1| phage protein [Listeria monocytogenes FSL J2-071] gi|290556395|gb|EFD89935.1| phage protein [Listeria monocytogenes FSL J2-071] Length = 73 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 +L+R+ G++Q++L +G+ ++K E GV + I ++L + I F Sbjct: 9 KLKRIENGLTQKQLANKVGLAEISIRKIENGVRNPSINTAVRICKILNTKIEVIFPDIFL 68 Query: 80 VCSDI 84 + +D Sbjct: 69 LTNDT 73 >gi|251789116|ref|YP_003003837.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537737|gb|ACT06358.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 81 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 32/66 (48%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V K P +G+ IR RR +LG+SQE L GI + + E+G V L Sbjct: 4 VSGKNDPAHALPLLGQTIRQRRELLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLR 63 Query: 62 ISEVLE 67 I++ LE Sbjct: 64 IADALE 69 >gi|251778963|ref|ZP_04821883.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083278|gb|EES49168.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 148 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R G+S+++L + LG+T + +YE L+ IS L+ I+ Sbjct: 3 IGANIKRERERKGLSRKQLADSLGVTDVSISRYENEKRTPSIKILESISLRLDVSINDL 61 >gi|256827925|ref|YP_003156653.1| XRE family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256577101|gb|ACU88237.1| transcriptional regulator, XRE family [Desulfomicrobium baculatum DSM 4028] Length = 186 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R + +S+E + LG+T V YE G + + S L ++++ + ++ Sbjct: 14 RLRGLRDAMDLSEEDMAAQLGVTAADVLGYESGEHEIPVSYLFNVAQAFQVDLTVLMSGK 73 Query: 78 PTVCSDIS 85 S Sbjct: 74 EAHLHTAS 81 >gi|227553220|ref|ZP_03983269.1| transcriptional regulator [Enterococcus faecalis HH22] gi|307291409|ref|ZP_07571293.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|312904166|ref|ZP_07763334.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|227177586|gb|EEI58558.1| transcriptional regulator [Enterococcus faecalis HH22] gi|306497640|gb|EFM67173.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|310632642|gb|EFQ15925.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|315029956|gb|EFT41888.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4000] Length = 107 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 6/89 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G R+ R ++Q + LG+ YE+G I++ + + Sbjct: 3 GTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYLHG 62 Query: 74 ---FDVSPTVCSDISSEENNVMDFISTPD 99 F+ + ++ + + D +S + Sbjct: 63 RESFEDTSLSKKQLTVAAH-IDDDVSDTE 90 >gi|218689364|ref|YP_002397576.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218426928|emb|CAR07787.2| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|315298577|gb|EFU57832.1| helix-turn-helix protein [Escherichia coli MS 16-3] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTF 66 >gi|190894990|ref|YP_001985283.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700651|gb|ACE94733.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 203 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 22 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPI 79 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 80 GLAEFFAFEPERPKKAFYAAEELVEI 105 >gi|163796221|ref|ZP_02190182.1| transcriptional regulator, XRE-family protein [alpha proteobacterium BAL199] gi|159178363|gb|EDP62905.1| transcriptional regulator, XRE-family protein [alpha proteobacterium BAL199] Length = 195 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 37/99 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G+S ++L G++ + + E+ + + I LE FF Sbjct: 18 GGEILRARKDAGLSLDELARRSGVSKSILSQIERDSTNPTIATVWRICAALERTPESFFR 77 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 S ++ +N I + DG R I+ V+ Sbjct: 78 SGDEERSGVALLSSNATPEIQSEDGRCRLRILGAIETVE 116 >gi|154500872|ref|ZP_02038910.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] gi|150270372|gb|EDM97698.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] Length = 157 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV----LES 68 +++G + R G+SQE + E LG++ Q + K+E + + ++ + L+ Sbjct: 9 MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYNMTLDE 68 Query: 69 PISFFFDVSPTVC--SDISSEENNVMDF--ISTPDGLQLNRYFI--QIDD--VKVRQKII 120 I + FD +S E +D+ + + L Y +IDD +R+ + Sbjct: 69 LIEYDFDEQQAQQMIESVSEEAQARIDWNKVWSKKYPVLATYHRTVRIDDYAPTLREMLT 128 Query: 121 EL 122 +L Sbjct: 129 QL 130 >gi|161598530|ref|YP_001573911.1| hypothetical protein pEDINA_p39 [Staphylococcus aureus] gi|27531763|dbj|BAC54531.1| unnamed protein product [Staphylococcus aureus] gi|282166102|gb|ADA80122.1| hypothetical protein SAP099B_021 [Staphylococcus aureus] Length = 64 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 I+ +R + G SQE+L L ++ Q V K+E N L +S++ + Sbjct: 7 IKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHL 61 >gi|114770344|ref|ZP_01447882.1| transcriptional regulator, putative [alpha proteobacterium HTCC2255] gi|114549181|gb|EAU52064.1| transcriptional regulator, putative [alpha proteobacterium HTCC2255] Length = 432 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R L ++Q+ L + GI+ + E + L I+ L S Sbjct: 6 LGTRIRENRKALRLTQKDLAKVAGISASYLNLIEHNRRGIAGKTLNTIARALSVEPSELS 65 Query: 75 DVSPTVCSD 83 D D Sbjct: 66 DGMNQALVD 74 >gi|66395676|ref|YP_240035.1| ORF020 [Staphylococcus phage 47] gi|209363558|ref|YP_002267976.1| probable transcriptional repressor [Staphylococcus phage phi2958PVL] gi|257428267|ref|ZP_05604665.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 65-1322] gi|282905891|ref|ZP_06313746.1| transcriptional repressor [Staphylococcus aureus subsp. aureus Btn1260] gi|282919258|ref|ZP_06326993.1| transcriptional repressor [Staphylococcus aureus subsp. aureus C427] gi|284024543|ref|ZP_06378941.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 132] gi|62636100|gb|AAX91211.1| ORF020 [Staphylococcus phage 47] gi|208973059|dbj|BAG74375.1| probable transcriptional repressor [Staphylococcus phage phi2958PVL] gi|257275108|gb|EEV06595.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 65-1322] gi|282317068|gb|EFB47442.1| transcriptional repressor [Staphylococcus aureus subsp. aureus C427] gi|282331183|gb|EFB60697.1| transcriptional repressor [Staphylococcus aureus subsp. aureus Btn1260] Length = 204 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFDVS 77 I+ RR L ++ E++G+ +G+ V+K+E G + + ++ +++ L S+ + Sbjct: 5 IKSRRKELNLTLEQVGDLVGVGKSTVRKWETGDIENMKRDKIVKLAKALRVSPSYIMGIE 64 Query: 78 PT 79 Sbjct: 65 DE 66 >gi|77462199|ref|YP_351703.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1] gi|77386617|gb|ABA77802.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1] Length = 120 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 4/89 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G +QE L G++ Q+ E+ RL I+ L F+ + Sbjct: 27 RIKQLREARGWTQEVLAARSGMSRSQLAMIERETRPANTIRLNAIAGALGVSTEDLFESN 86 Query: 78 PTVCSDIS----SEENNVMDFISTPDGLQ 102 P + + +V I +GL Sbjct: 87 PRERALLELIRLLPSEDVEALIRVAEGLA 115 >gi|26247719|ref|NP_753759.1| hypothetical protein c1858 [Escherichia coli CFT073] gi|110641615|ref|YP_669345.1| hypothetical protein ECP_1437 [Escherichia coli 536] gi|191172851|ref|ZP_03034387.1| DNA-binding protein [Escherichia coli F11] gi|227886179|ref|ZP_04003984.1| possible transcriptional regulator [Escherichia coli 83972] gi|300975406|ref|ZP_07172980.1| helix-turn-helix protein [Escherichia coli MS 200-1] gi|300976462|ref|ZP_07173445.1| helix-turn-helix protein [Escherichia coli MS 45-1] gi|301046759|ref|ZP_07193881.1| helix-turn-helix protein [Escherichia coli MS 185-1] gi|331657437|ref|ZP_08358399.1| putative oxidoreductase/putative repressor [Escherichia coli TA206] gi|26108121|gb|AAN80321.1|AE016760_180 Hypothetical protein ydcN [Escherichia coli CFT073] gi|47600733|emb|CAE55854.1| hypothetical protein YdcN [Escherichia coli Nissle 1917] gi|110343207|gb|ABG69444.1| hypothetical protein YdcN (putative DNA-binding protein) [Escherichia coli 536] gi|190906857|gb|EDV66460.1| DNA-binding protein [Escherichia coli F11] gi|227836844|gb|EEJ47310.1| possible transcriptional regulator [Escherichia coli 83972] gi|300301320|gb|EFJ57705.1| helix-turn-helix protein [Escherichia coli MS 185-1] gi|300308732|gb|EFJ63252.1| helix-turn-helix protein [Escherichia coli MS 200-1] gi|300410034|gb|EFJ93572.1| helix-turn-helix protein [Escherichia coli MS 45-1] gi|307553442|gb|ADN46217.1| putative HTH-type transcriptional regulator YdcN [Escherichia coli ABU 83972] gi|315290641|gb|EFU50013.1| helix-turn-helix protein [Escherichia coli MS 153-1] gi|320195607|gb|EFW70232.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli WV_060327] gi|324015156|gb|EGB84375.1| helix-turn-helix protein [Escherichia coli MS 60-1] gi|331055685|gb|EGI27694.1| putative oxidoreductase/putative repressor [Escherichia coli TA206] Length = 178 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R G S +L E G++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTF 66 >gi|332364291|gb|EGJ42066.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 99 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ ++Q+++ E L ++ Q +E G + G L + I + Sbjct: 4 ERLKSLRLEANLTQKQVAEKLNMSQPAYQSWESGKRKPGEETLNKFANFFSVSIDYLLGK 63 Query: 77 SPTVCSD 83 + SD Sbjct: 64 TDNRKSD 70 >gi|319782930|ref|YP_004142406.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168818|gb|ADV12356.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 187 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 2/94 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I N + +G+RI R++ S +L E G++ + E+G A+ L IS Sbjct: 4 IANEISSTIGRRIHAERVMRDWSLAELAEHSGVSKAMLSTIERGKTSPTAALLVRISSAF 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 +S + + E + + PD Sbjct: 64 GMTLSTLIARAELQGGRLLREADQPV--WRDPDT 95 >gi|294615154|ref|ZP_06695038.1| transcription regulator [Enterococcus faecium E1636] gi|312905108|ref|ZP_07764229.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|291591974|gb|EFF23599.1| transcription regulator [Enterococcus faecium E1636] gi|310631498|gb|EFQ14781.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579064|gb|EFU91255.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 71 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ +L + + +T Q V ++ G +++ +SE+L P++ F Sbjct: 5 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 62 >gi|289175228|emb|CBJ82031.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 401 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ R G+S+ LG+ + + V K+E G + A L +S VL P+ +F Sbjct: 11 ARLTQMREARGLSKISLGKLVERSPSTVTKWENGNHSPDAEILHSLSRVLNCPVGWF 67 >gi|238853357|ref|ZP_04643737.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282852340|ref|ZP_06261682.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311111561|ref|ZP_07712958.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] gi|238834045|gb|EEQ26302.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282556082|gb|EFB61702.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311066715|gb|EFQ47055.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] Length = 64 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ L + + + Q + E ++ L++ ++ F Sbjct: 2 NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLF 59 >gi|191174537|ref|ZP_03036034.1| regulatory protein [Escherichia coli F11] gi|300992733|ref|ZP_07180010.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|190905183|gb|EDV64825.1| regulatory protein [Escherichia coli F11] gi|300305229|gb|EFJ59749.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|324015072|gb|EGB84291.1| peptidase S24-like domain protein [Escherichia coli MS 60-1] Length = 230 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + L +I++ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIA 60 Query: 72 FFF 74 F Sbjct: 61 DLF 63 >gi|52079187|ref|YP_077978.1| putative HTH-type transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52784554|ref|YP_090383.1| hypothetical protein BLi00755 [Bacillus licheniformis ATCC 14580] gi|319647032|ref|ZP_08001258.1| hypothetical protein HMPREF1012_02296 [Bacillus sp. BT1B_CT2] gi|52002398|gb|AAU22340.1| Putative HTH-type transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52347056|gb|AAU39690.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317390856|gb|EFV71657.1| hypothetical protein HMPREF1012_02296 [Bacillus sp. BT1B_CT2] Length = 69 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ +R L M+QE+L + L ++ Q V EKG + ++++ E I F Sbjct: 5 IKEKRTSLNMTQEELAKRLNVSRQTVISLEKGKYKPSLVLAHKLAQIFECLIEDLF 60 >gi|327401729|ref|YP_004342568.1| XRE family transcriptional regulator [Archaeoglobus veneficus SNP6] gi|327317237|gb|AEA47853.1| transcriptional regulator, XRE family [Archaeoglobus veneficus SNP6] Length = 68 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R I ++QE+L + LG+T Q + EKG I+ + I F Sbjct: 3 NKLKVYRAIHDLTQEELAKKLGVTRQTIIAIEKGKYDPSLELAFKIARFFKVKIEDIF 60 >gi|300783917|ref|YP_003764208.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793431|gb|ADJ43806.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 211 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G++ +L G++ + + E+G R L I++ L + Sbjct: 29 VGTRIRELRRSRGLTLVQLAGRTGLSHPFLSQLERGHTRPSMVSLDRIAKALGTTQ---V 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 ++ + + D + +G Sbjct: 86 ELIAAGAPGLPDADIGRADVLRAGEG 111 >gi|229114819|ref|ZP_04244233.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] gi|228668884|gb|EEL24312.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] Length = 107 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 + + SE Sbjct: 62 LHDETEKEAHLDSE 75 >gi|227485924|ref|ZP_03916240.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227236157|gb|EEI86172.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 207 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 3/115 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R LG++ E+ G+ LG+T + E G + + I V + + Sbjct: 3 ENIKKLRQELGLTMEEFGKNLGVTRSAISNIENGYRNLTEQMILAICNVYNVNEQWLRNG 62 Query: 77 SPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + E + D+ + + +I++ D K R+ +++ I S Sbjct: 63 TGDMFVEDTDSLIEKIISDYPLDKLSQTILKTYIEL-DPKKREIFNYVMKQIADS 116 >gi|225377291|ref|ZP_03754512.1| hypothetical protein ROSEINA2194_02938 [Roseburia inulinivorans DSM 16841] gi|225210822|gb|EEG93176.1| hypothetical protein ROSEINA2194_02938 [Roseburia inulinivorans DSM 16841] Length = 118 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 11/106 (10%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +G+ I+ +R G +QE L + + T + + +E + I +L+ Sbjct: 8 LDFHALGREIKRKREAKGWTQEYLAQLVDRTPRSIMYFENRGQHPSLNTFYQIVTLLDIS 67 Query: 70 IS-FFFDVSPTVCSD---------ISSEENNVMDFISTPDGLQLNR 105 + FF+ SD S +E + +T +GLQ R Sbjct: 68 VDQFFYPDRQNSESDCRQHIDRLLNSMDEKELTVMEATAEGLQKAR 113 >gi|239629817|ref|ZP_04672848.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066939|ref|YP_003788962.1| putative transcriptional regulator [Lactobacillus casei str. Zhang] gi|239527429|gb|EEQ66430.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439346|gb|ADK19112.1| Predicted transcriptional regulator [Lactobacillus casei str. Zhang] Length = 67 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R MSQ L E +G+ Q + E G + ++ L++ ++ F Sbjct: 2 NRVRDYRRAKKMSQLALAEKIGVARQTINLIENGKYNPSLALCLKLAWTLKTDLNSLF 59 >gi|209558928|ref|YP_002285400.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus phage NZ131.1] gi|209540129|gb|ACI60705.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus phage NZ131.1] Length = 222 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFF 73 R++ R ++Q++L E +G+ ++ +Q +EK ++ + + +++ + + + Sbjct: 2 NRLKELRENNSITQQELAEKIGVHYRTIQNWEKDTKTQIKPEKAKMLADYFDVSVGYL 59 >gi|162457008|ref|YP_001619375.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161167590|emb|CAN98895.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 476 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 13/132 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R M+Q L E LG++ + E + A L ++++ + + F Sbjct: 7 LGAKVRALRRREHMTQVDLAERLGVSASYLNLIENNRRPLTAPLLIRLAQIFQLDLQNFA 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL------QLNRYFIQIDDVKVRQKIIELVRSIVS 128 + E D I GL +L V + ++ L R+ + Sbjct: 67 SEEDVRLTADLHE--VFGDPIFESHGLTNADLRELVAA-----SPNVARAVLTLYRTYAT 119 Query: 129 SEKKYRTIEEEC 140 + + T+ E Sbjct: 120 TRESLDTLGERL 131 >gi|24378729|ref|NP_720684.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24376595|gb|AAN57990.1|AE014871_15 putative transcriptional regulator [Streptococcus mutans UA159] Length = 117 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+++ E L I Q ++E G + ++ L ++ + Sbjct: 4 ERLKSLRLEAGLTQKQIAEKLEIKQQSYAQWESGRTKPRSATLNKFADFFGVTTDYLLGK 63 Query: 77 SPTVCSDISSEE 88 + EE Sbjct: 64 TNIKKEIPEGEE 75 >gi|24380321|ref|NP_722276.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24378337|gb|AAN59582.1|AE015021_3 putative transcriptional regulator [Streptococcus mutans UA159] Length = 81 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R I +SQ +L + L +T Q + EKG I++ + I F Sbjct: 4 RIQELRKINKLSQSELADALSVTRQTIISLEKGRYNASLELAYKIAKYFGTTIEDVFIFE 63 Query: 78 PTVCSD 83 D Sbjct: 64 DENRGD 69 >gi|261885677|ref|ZP_06009716.1| hypothetical protein CfetvA_11379 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 242 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K+I+ R+ G +Q L + G++ +++YE + + L+ I+ + IS Sbjct: 9 MRLSKKIKEYRLEKGWTQYDLAKFSGVSLGSIKRYETDNGNITYANLEKIANAFQKDISN 68 Query: 73 F 73 F Sbjct: 69 F 69 >gi|260684687|ref|YP_003215972.1| putative phage DNA-binding protein [Clostridium difficile CD196] gi|260688345|ref|YP_003219479.1| putative phage DNA-binding protein [Clostridium difficile R20291] gi|260210850|emb|CBA65947.1| putative phage DNA-binding protein [Clostridium difficile CD196] gi|260214362|emb|CBE06743.1| putative phage DNA-binding protein [Clostridium difficile R20291] Length = 280 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R ++Q +L E GI+ + YE L +++ L+ + Sbjct: 27 LQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEKTI 86 Query: 73 F-FDVSPTVCSD 83 F FD+ V ++ Sbjct: 87 FYFDIENEVMTN 98 >gi|290579706|ref|YP_003484098.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254996605|dbj|BAH87206.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 82 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R I +SQ +L + L +T Q + EKG I++ + I F Sbjct: 5 RIQELRKINKLSQSELADALSVTRQTIISLEKGRYNASLELAYKIAKYFGTTIEDVFIFE 64 Query: 78 PTVCSDISSEENNVMDF 94 D +NNV F Sbjct: 65 DENRGD----DNNVSKF 77 >gi|227549722|ref|ZP_03979771.1| MerR family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078218|gb|EEI16181.1| MerR family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 467 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L L ++ V + E V + L+ I+E +FF Sbjct: 5 YVGSRLRQLRRERNLSQASLAATLELSASYVNQIEHDVRPLTVPVLKRITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D S + D ++ + Sbjct: 65 ------SRDDDSRLLAELKDVVADQE 84 >gi|162457184|ref|YP_001619551.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161167766|emb|CAN99071.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 79 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 19 IRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 IR R G M+Q +L E +G+T Q + E+G I+ P+ F Sbjct: 12 IRTLRFHAGEMTQAELAEKVGVTRQTIVAIEQGRYSPSLEVAFRIAAAFGVPLEHVFQWK 71 Query: 78 PTVCSD 83 V + Sbjct: 72 GDVSGE 77 >gi|134298756|ref|YP_001112252.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051456|gb|ABO49427.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 106 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 16/119 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +I R +G S+ KL + G++ + + E G + L I L ++ Sbjct: 4 MNISFKITKLRKSVGWSKNKLAKESGLSQAYISQLEAGQKQPTIDSLDRICSSLGLTLAE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF SEEN + +PD QL + ++ ++ R+ I ++R + + Sbjct: 64 FF-----------SEENKPL----SPDIAQLVNHASKLTPIQ-RELISSVMREMAKDNE 106 >gi|49081996|gb|AAT50398.1| PA0906 [synthetic construct] Length = 238 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R +SQ +L + +G+T + E+G +R S + I+ + + Sbjct: 6 RIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSR-ATSFVAQIAGACGVNPLWLAEGR 64 Query: 78 PTVCSDISSE 87 + ++ Sbjct: 65 GEMLAERGQA 74 >gi|115359028|ref|YP_776166.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284316|gb|ABI89832.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 185 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 79 T 79 Sbjct: 74 P 74 >gi|223932178|ref|ZP_03624182.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223899159|gb|EEF65516.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 158 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 56 >gi|325660971|ref|ZP_08149598.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472478|gb|EGC75689.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium 4_1_37FAA] Length = 181 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 47/111 (42%), Gaps = 20/111 (18%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R ++Q++L + L ++ Q V ++EKG + ++ L+ + Sbjct: 37 NIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVD------ 90 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK----VRQKIIELVR 124 + SD ++ V I + +I D K ++++I++ ++ Sbjct: 91 -ELISDEDVKDLQVNYGIWKSE---------RIKDKKHLQVLQKRILDFIQ 131 >gi|325957661|ref|YP_004293073.1| XRE family transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325334226|gb|ADZ08134.1| XRE family transcriptional regulator [Lactobacillus acidophilus 30SC] gi|327184304|gb|AEA32751.1| XRE family transcriptional regulator [Lactobacillus amylovorus GRL 1118] Length = 272 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 13/132 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG++Q ++ + IT K E+ + + A L I + Sbjct: 1 MTIGEALKKERKDLGLTQAEMAAGV-ITTAHYSKIERDKHDISAYDLFEILTKNNINLVD 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII--ELVRSIVSSE 130 F + N+ L+L F Q D VR I+ E+ S + E Sbjct: 60 FIKEIEDTYQSTPENQINLN--------LRLIHAFYQSDQKSVR--ILNKEIQESAATKE 109 Query: 131 KKYRTIEEECMV 142 +K R I E V Sbjct: 110 EKLRAILIEANV 121 >gi|322804952|emb|CBZ02511.1| transcriptional regulator [Clostridium botulinum H04402 065] Length = 183 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFD 75 + + Sbjct: 63 TLLLE 67 >gi|330399475|ref|YP_004030573.1| Cro/CI family transcriptional regulator [Burkholderia rhizoxinica HKI 454] gi|312170212|emb|CBW77251.1| Transcriptional regulator, Cro/CI family [Burkholderia rhizoxinica HKI 454] Length = 130 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + +G+ I +R + G++QE+L E G+ + + E+G G RL Sbjct: 1 MAQENESRSKLARTIGQAIARQRRLRGLTQEQLSEAAGLAQASLSQIERGRVLPGLDRLA 60 Query: 61 HISEVLES 68 ++++L+ Sbjct: 61 QLAQLLDC 68 >gi|259417133|ref|ZP_05741052.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259346039|gb|EEW57853.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 188 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S E + G++ V + E+G + + L +++ L+ + + Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLEA 73 Query: 77 SPTV 80 S TV Sbjct: 74 SETV 77 >gi|227522962|ref|ZP_03953011.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227089780|gb|EEI25092.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 67 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ L E +G+ Q + E + I++VL + ++ F Sbjct: 2 NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLF 59 >gi|255652577|ref|ZP_05399479.1| putative phage DNA-binding protein [Clostridium difficile QCD-37x79] Length = 278 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R M+QE+L E GI+ + YE+ L+ ++ L++ Sbjct: 3 IGENIKTFRKDRRMTQEQLAEKAGISRVALGNYEREERVPNLDILEKLATALDTS 57 >gi|255092519|ref|ZP_05321997.1| transcriptional regulator [Clostridium difficile CIP 107932] Length = 126 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 16/113 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RIR R +SQ GE LG++ + E + ++ +V + Sbjct: 6 ISTRIRKIRKDANLSQPAFGEKLGVSKDVISNIEYNRVEPKPLFINYMCDVFNVNKEWLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID---DVKVRQKIIELVR 124 + + +IST D + L F I + K+++ +I L + Sbjct: 66 NGVGNM-------------YISTEDDILLGEAFAYITTCENEKLKKIVINLCK 105 >gi|218709441|ref|YP_002417062.1| hypothetical protein VS_1450 [Vibrio splendidus LGP32] gi|218322460|emb|CAV18613.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 142 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 29/56 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G ++ R + +SQ ++ +G+T Q K+E A+++ +++VL Sbjct: 19 MMIGSVLKEARALKNLSQPEVARLVGVTKQTYLKWENDTTEPKATQISKLAKVLGI 74 >gi|218133013|ref|ZP_03461817.1| hypothetical protein BACPEC_00874 [Bacteroides pectinophilus ATCC 43243] gi|217991886|gb|EEC57890.1| hypothetical protein BACPEC_00874 [Bacteroides pectinophilus ATCC 43243] Length = 69 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 IR R+ MSQ++L + +G + Q + + E V L +I+++ + + + Sbjct: 5 IRKLRLERNMSQKQLAKVVGTSQQTISRIENDVMSSPVDLLVNIADLFDVSVDYL 59 >gi|254489092|ref|ZP_05102296.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214042100|gb|EEB82739.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 204 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Query: 1 MVGNKKIPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M K P P D +G+ R R G+S +L E G++ + + E+ + Sbjct: 1 MSDPDK-PTPEDTPGAIGETFRQMRQNQGISLRELSEKSGVSVGTISQIERDLANPSMRV 59 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVM 92 L I L P+ F +D ++ + Sbjct: 60 LTAIRRALNVPMQVMFGDDSGTTADSDADGDPPF 93 >gi|170755017|ref|YP_001780261.1| cupin domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120229|gb|ACA44065.1| cupin domain protein [Clostridium botulinum B1 str. Okra] Length = 183 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFD 75 + + Sbjct: 63 TLLLE 67 >gi|168483951|ref|ZP_02708903.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|172042755|gb|EDT50801.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|332201874|gb|EGJ15944.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 69 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ L ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|168183318|ref|ZP_02617982.1| cupin domain protein [Clostridium botulinum Bf] gi|237793956|ref|YP_002861508.1| cupin domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182673516|gb|EDT85477.1| cupin domain protein [Clostridium botulinum Bf] gi|229263990|gb|ACQ55023.1| cupin domain protein [Clostridium botulinum Ba4 str. 657] Length = 183 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFD 75 + + Sbjct: 63 TLLLE 67 >gi|160893069|ref|ZP_02073857.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50] gi|156865152|gb|EDO58583.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50] Length = 222 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+ I R G +Q++L E L I+ + V K+E G S L + + L+ ++ Sbjct: 17 ISIGRFIAAERKRKGCTQKQLAEKLNISDKTVSKWECGKGFPEVSLLLPLCKELDITVNE 76 Query: 73 FFDVSPTVCSDIS-SEENNVMDFISTPD 99 + + E N+++ I + Sbjct: 77 LLSGARVSEEEYQKKAEENMVNMIKERE 104 >gi|153940779|ref|YP_001389988.1| cupin domain-containing protein [Clostridium botulinum F str. Langeland] gi|152936675|gb|ABS42173.1| cupin domain protein [Clostridium botulinum F str. Langeland] gi|295318072|gb|ADF98449.1| cupin domain protein [Clostridium botulinum F str. 230613] Length = 183 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFD 75 + + Sbjct: 63 TLLLE 67 >gi|148378625|ref|YP_001253166.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934328|ref|YP_001383012.1| DNA-binding cupin domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153935310|ref|YP_001386559.1| helix-turn-helix domain-containing protein [Clostridium botulinum A str. Hall] gi|168177994|ref|ZP_02612658.1| cupin domain protein [Clostridium botulinum NCTC 2916] gi|226947877|ref|YP_002802968.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] gi|148288109|emb|CAL82177.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152930372|gb|ABS35872.1| DNA-binding/cupin domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931224|gb|ABS36723.1| helix-turn-helix domain protein [Clostridium botulinum A str. Hall] gi|182671201|gb|EDT83175.1| cupin domain protein [Clostridium botulinum NCTC 2916] gi|226840881|gb|ACO83547.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] Length = 183 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFD 75 + + Sbjct: 63 TLLLE 67 >gi|150398683|ref|YP_001329150.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030198|gb|ABR62315.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 263 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G R++ R MSQ L GI+ + + E G ++ + ++ VL+ P Sbjct: 1 MEFGSRLKEWRGHRRMSQLDLANAAGISARHLSFLETGRSKPTEGMILRLASVLDVP 57 >gi|89055144|ref|YP_510595.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864693|gb|ABD55570.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 133 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+SQ +L + LG+ + ++ +E+ + A++L ++ +L + + Sbjct: 20 GDRVTGAREAAGLSQPELAKRLGVRVKTIRAWEQDQSEPRANKLGTLAGILGVSMMWLLA 79 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E ++ +D + L ++RQ+ + L + EK+ R Sbjct: 80 GQGEGLD--SPELSDPLDGDIEKILIDL---------RQMRQEQVSLAERMGLIEKRLRA 128 Query: 136 IE 137 Sbjct: 129 AL 130 >gi|315121942|ref|YP_004062431.1| hypothetical protein CKC_00960 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495344|gb|ADR51943.1| hypothetical protein CKC_00960 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 193 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI NP +G R++ R+ +G++Q++ G +G++ V E G I Sbjct: 88 KKIFNP--RAIGARLKAIRLKMGLTQKEFGLLIGLSSVGVGNIENGHRTPEIKTALKIKR 145 Query: 65 VLESPISFFFDVSPTV 80 L P+ + + + Sbjct: 146 ALGKPLDWIYFGDEPI 161 >gi|303243062|ref|ZP_07329512.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302589397|gb|EFL59195.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 114 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR +R+ + ++QE+L E + +++ V + E+G + L ++ L + + Sbjct: 6 LGERIRKQRLKVNLTQEQLAEKIDMSYSFVGQIERGDRVLSLETLVRLANELSISVDYLI 65 Query: 75 DVS 77 S Sbjct: 66 QDS 68 >gi|291530055|emb|CBK95640.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Eubacterium siraeum 70/3] Length = 115 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R+ G+SQEKL E G + + E+G ++ I+ + ++ F+ Sbjct: 14 GQRVRNYRIDKGLSQEKLAELSGCHPTYIGQVERGEKNATLESIEKIASAMNISLAQLFE 73 Query: 76 VSPTVCSD 83 +D Sbjct: 74 KIGESSTD 81 >gi|288905287|ref|YP_003430509.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306831364|ref|ZP_07464524.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978272|ref|YP_004287988.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732013|emb|CBI13578.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304426600|gb|EFM29712.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178200|emb|CBZ48244.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 226 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 8/101 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G++++ R G SQ ++ + L I+ +E G + L +S++L ++F Sbjct: 4 GEKLKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSQLLGVEETYFVS 63 Query: 74 -FDVSPT----VCSDISSEENNVMDFISTPD-GLQLNRYFI 108 +D+ T + EN D + + +QL +Y+ Sbjct: 64 EYDIVDTYFKLNKDNRHKLENYADDLLKEQEKIVQLPKYYA 104 >gi|254487954|ref|ZP_05101159.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214044823|gb|EEB85461.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 183 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS- 71 +++G R+R R G+SQ +L G+T + EK + L+ + + PIS Sbjct: 1 MDIGHRLRTIREERGLSQRELAAKAGLTNGTISLIEKNKTSPSVASLKSLLDA--IPISM 58 Query: 72 --FFFDVSPTVCSDISSEENNVMDFISTPDG 100 FF + + ++ ++ + +G Sbjct: 59 AEFFSPLEDAETPKVFYRQSEFIEISPSSEG 89 >gi|212709629|ref|ZP_03317757.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] gi|212687733|gb|EEB47261.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] Length = 236 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ LG+SQE LG+ +G+ V + GVN + ++E LE + F Sbjct: 23 AKKKELGLSQESLGDAIGMGQSAVAQLLNGVNAINVENAVKLAEALEVSVDDF 75 >gi|172063826|ref|YP_001811477.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996343|gb|ACB67261.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 185 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 14/129 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD----VKVRQKIIELVRSIVSSEKKYR 134 + +++ PD + Y I D +R + L + Sbjct: 74 PRS----------VPWVTRPDERRTVYYAAGITDILVSPNMRSRFSILESHLAPGASSGE 123 Query: 135 TIEEECMVE 143 ++ + Sbjct: 124 RSVDDSDEQ 132 >gi|160935693|ref|ZP_02083068.1| hypothetical protein CLOBOL_00583 [Clostridium bolteae ATCC BAA-613] gi|158441437|gb|EDP19147.1| hypothetical protein CLOBOL_00583 [Clostridium bolteae ATCC BAA-613] Length = 129 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 44/117 (37%), Gaps = 23/117 (19%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G +Q+ L + +G++ + EK A + + ++L + Sbjct: 18 LGERLNYARKQKGYTQDSLAQTIGVSRGVIFNLEKNKTEPQAIVINAVCQILNINKEWLT 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D + + S N+ F K+ +++ ++ + + E+ Sbjct: 78 DGTGDMESG--------------------NQAF---QSAKLLEELYDIAKELSEDEQ 111 >gi|160893910|ref|ZP_02074689.1| hypothetical protein CLOL250_01465 [Clostridium sp. L2-50] gi|156864288|gb|EDO57719.1| hypothetical protein CLOL250_01465 [Clostridium sp. L2-50] Length = 91 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RI+ R+ ++ +LG CLGI QV + E GV R +L I + + Sbjct: 3 MEVGQRIQDIRIENEVTGAQLGACLGINGNQVSRIETGVARCSIYQLVLICQEFGCSADY 62 Query: 73 F 73 Sbjct: 63 L 63 >gi|187922166|ref|YP_001893808.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713360|gb|ACD14584.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 119 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ ++QE+LG GI ++ +YE+G + Q ++ L P SF Sbjct: 13 KRLKEARVRSCLTQEQLGINAGIDEFSASARINQYERGKHLPHLGMGQRLARALHVPTSF 72 Query: 73 FFDVSPTVCSDISSEENNVMD----FISTPDGL 101 ++ + + + + ++ + L Sbjct: 73 LYEEDDLLAALLVAAARLTRSRKKVLLANAETL 105 >gi|33326774|gb|AAQ08805.1| BzdR [Azoarcus sp. CIB] Length = 298 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G RIR R GM+++ L + G++ + + + E G + L+ I++ L PI Sbjct: 26 LGDRIRDLRAQRGMTRKMLAQQSGVSERYLAQLETGHGNISIILLRQIAQGLGFPI 81 >gi|71065283|ref|YP_264010.1| bifunctional HTH-domain containing protein/aminotransferase [Psychrobacter arcticus 273-4] gi|71038268|gb|AAZ18576.1| aminotransferase [Psychrobacter arcticus 273-4] Length = 546 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Query: 17 KRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R+ R GM+ E+L + + ++ + +E+G N + +S+L ++ +L Sbjct: 13 ERLVQLRRDKGMTAEQLAQAMTAAGAKVSRGAISNWERGTNGIVSSKLPTLARILGCSEG 72 Query: 72 FFF--DVSPTVCSDIS 85 + ++ SD+ Sbjct: 73 YLLRGELESDSKSDVD 88 >gi|320189877|gb|EFW64529.1| hypothetical protein ECoD_03358 [Escherichia coli O157:H7 str. EC1212] Length = 373 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++L R G++ E+L LG+T Q + K E+G + L +++ L+ SFFF Sbjct: 12 GDCLKLARQAKGVTGEELATALGVTRQFINKLERGY-PPSSQMLTALADYLDVKESFFFT 70 Query: 76 V 76 Sbjct: 71 G 71 >gi|260597676|ref|YP_003210247.1| DNA-binding transcriptional repressor PuuR [Cronobacter turicensis z3032] gi|260216853|emb|CBA30375.1| HTH-type transcriptional regulator puuR [Cronobacter turicensis z3032] Length = 185 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 75 DVSPTVCSDISSEENNVMDF 94 + + ++ +++ Sbjct: 69 EPEKPDEPQVVINQDELIEI 88 >gi|323342462|ref|ZP_08082694.1| cro/CI family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463574|gb|EFY08768.1| cro/CI family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 177 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKR++ R G++ E+L +T + + E + + L I E L + +S Sbjct: 1 MEIGKRLKQLRTKNGLTLEELASRSELTKGFLSQLENDLTSPSIATLNDIVEALGTNLSV 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF ++++ + + Sbjct: 61 FFKEESAEQVVFTADDYFIDE 81 >gi|304316012|ref|YP_003851157.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777514|gb|ADL68073.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 129 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 13 INVGKRIRLRRMILGMSQ----EKLGEC-LGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 I++G +I+ R G+SQ E+L E + I+ + + K E G V A L + +VL Sbjct: 5 ISIGLKIKAIREARGLSQIEVVERLAEKDINISRETLSKIENGNRTVSAVELNALCKVLN 64 Query: 68 SPISFFFDVSPT 79 I+ F+ Sbjct: 65 IDINILFEDEED 76 >gi|218234511|ref|YP_002369300.1| DNA-binding protein [Bacillus cereus B4264] gi|228923247|ref|ZP_04086537.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|218162468|gb|ACK62460.1| DNA-binding protein [Bacillus cereus B4264] gi|228836453|gb|EEM81804.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 190 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 I++ L P+S V V E V + F T + G++++R Sbjct: 61 WKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDEGQAWHLETMFRYTKETGMEMHRA 117 >gi|167856042|ref|ZP_02478786.1| helix-turn-helix domain protein [Haemophilus parasuis 29755] gi|219870567|ref|YP_002474942.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167852837|gb|EDS24107.1| helix-turn-helix domain protein [Haemophilus parasuis 29755] gi|219690771|gb|ACL31994.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 114 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R G++Q +L E LGI+ V + E+G RL +SE+ ++ Sbjct: 12 IGQAIAKYRQASGLTQAQLAEILGISNDAVSRMERGKTIPTVLRLLELSEIFHCEVADLV 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S +D + ++ + + +L Sbjct: 72 TESSNRSTDQAKVIEKLLQQLDSQQRSELL 101 >gi|145629763|ref|ZP_01785558.1| helix-turn-helix domain protein [Haemophilus influenzae 22.1-21] gi|145638505|ref|ZP_01794114.1| helix-turn-helix domain protein [Haemophilus influenzae PittII] gi|144978002|gb|EDJ87786.1| helix-turn-helix domain protein [Haemophilus influenzae 22.1-21] gi|145272100|gb|EDK12008.1| helix-turn-helix domain protein [Haemophilus influenzae PittII] gi|309751804|gb|ADO81788.1| Conserved hypothetical protein [Haemophilus influenzae R2866] Length = 113 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 17/123 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + NVG I R G+SQ K+ E L ++ + + E+G RL +E+ + Sbjct: 8 IAKNVGMMIAKYRKQAGLSQAKVAELLDLSIDSISRIERGNIVPNVPRLFEFAELFDCEP 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F D S + + ++ ++T D R K++ V +IV + Sbjct: 68 SDFLK-RSHRLQDQSRQFDELLAQLNTKD----------------RAKLLNFVEAIVEWK 110 Query: 131 KKY 133 ++ Sbjct: 111 QEK 113 >gi|15596103|ref|NP_249597.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100364|ref|ZP_01364282.1| hypothetical protein PaerPA_01001389 [Pseudomonas aeruginosa PACS2] gi|116048830|ref|YP_792370.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218893125|ref|YP_002441994.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254239258|ref|ZP_04932581.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719] gi|296390740|ref|ZP_06880215.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313105790|ref|ZP_07792053.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9946808|gb|AAG04295.1|AE004525_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115584051|gb|ABJ10066.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126171189|gb|EAZ56700.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719] gi|218773353|emb|CAW29165.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310878555|gb|EFQ37149.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 237 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R +SQ +L + +G+T + E+G +R S + I+ + + Sbjct: 6 RIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSR-ATSFVAQIAGACGVNPLWLAEGR 64 Query: 78 PTVCSDISSE 87 + ++ Sbjct: 65 GEMLAERGQA 74 >gi|326385820|ref|ZP_08207449.1| hypothetical protein Y88_2877 [Novosphingobium nitrogenifigens DSM 19370] gi|326209799|gb|EGD60587.1| hypothetical protein Y88_2877 [Novosphingobium nitrogenifigens DSM 19370] Length = 129 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R R G+ Q + E +GI+ + YEKG AS + S+V ++ Sbjct: 1 MSIGARFLEIRKAKGLKQTDVAEAIGISHGALVNYEKGR-EPPASAILAFSQVYGVSANW 59 Query: 73 FF--DVSPTVCS 82 + P S Sbjct: 60 LLTGEGRPDAES 71 >gi|320532299|ref|ZP_08033153.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135486|gb|EFW27580.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 62 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q +LG LG++ Q + EKG I+ E+ + F Sbjct: 5 VRGLREARGLTQAQLGAALGVSRQSINSIEKGKYDPSLPLAIAIARYFETTVEEIF 60 >gi|305662466|ref|YP_003858754.1| transcriptional regulator, XRE family [Ignisphaera aggregans DSM 17230] gi|304377035|gb|ADM26874.1| transcriptional regulator, XRE family [Ignisphaera aggregans DSM 17230] Length = 335 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R+ S +L + +G++ + +QKYE+ + + E+ F D Sbjct: 140 GEKLRKIRLERRYSLNELAKHVGVSVKALQKYEENEIDMSVEKAYRFLEI-------FGD 192 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 V SDI + + +G+ L R Sbjct: 193 DFEEVLSDIDIFSDRITKAEGHEEGIVLRR 222 >gi|294666246|ref|ZP_06731497.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603955|gb|EFF47355.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 149 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 17/128 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R G++Q +LG + + Q+ +YE G L +++ + Sbjct: 13 RLRNARERAGLTQRELGAEADVNYSQISRYEHGTAFPRPGVLLRLAKATGVSPEYLRSGG 72 Query: 78 PTVCSDISSEEN----------NVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVR 124 V +++ E + + G+ ++ F +++ VR ++ R Sbjct: 73 VPVADEVAYYEQLRPQLPKAAVEAFEAQAVKSGMPVDALFARLEALWIKTVRDEL----R 128 Query: 125 SIVSSEKK 132 ++ + ++ Sbjct: 129 AMAAESER 136 >gi|315497496|ref|YP_004086300.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315415508|gb|ADU12149.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 470 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 16/125 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R L ++Q ++ E LG++ + E+ V A L ++ + + Sbjct: 8 LFLGGRVKRLRHDLNLTQTRMAEDLGVSPSYLNHLERNQRPVTAQVLLKLASTYDLDMRT 67 Query: 73 F-FDVSPTVCSDISS------------EENNVMDFISTPDGL--QLNRYFIQIDDVKVRQ 117 F + P+ +D++ + D ++ + + R + + KVR+ Sbjct: 68 FTAEADPSGEADLAEVLSDPLFKDLHAPRREIADLVAASPTVAEAMLRLYRAYKERKVRE 127 Query: 118 KIIEL 122 +I+L Sbjct: 128 -VIDL 131 >gi|319650130|ref|ZP_08004279.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] gi|317398311|gb|EFV79000.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] Length = 183 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++G+ +R R G S + E G++ + + E+G + + L I+ L+ Sbjct: 4 IQKSIGENLRNIRKTRGYSLDAAAEITGVSKAMLGQIERGESNPTVTTLWKIASGLQVSF 63 Query: 71 SFFFDVSPTVCS 82 S P+ Sbjct: 64 SSLIHEEPSDVQ 75 >gi|312977554|ref|ZP_07789302.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|310895985|gb|EFQ45051.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 76 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 KI N V+ G+R++ R +QE+LG + ++ + +YE G++ + +++V Sbjct: 2 KIMNDVEKF-GRRLKRFRKNKHYTQERLGREVYVSDTTIGRYEHGISMPDKRMVYELAQV 60 Query: 66 LESPIS 71 L Sbjct: 61 LGVTPD 66 >gi|283785313|ref|YP_003365178.1| transcriptional regulator [Citrobacter rodentium ICC168] gi|282948767|emb|CBG88362.1| putative transcriptional regulator [Citrobacter rodentium ICC168] Length = 178 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E G++ + + E+ + + L I+ L P S F ++P Sbjct: 12 LKTLRSQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTF--IAP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + + + TP Sbjct: 70 PESTRLPTFDPQQQAMVVTP 89 >gi|197302684|ref|ZP_03167738.1| hypothetical protein RUMLAC_01414 [Ruminococcus lactaris ATCC 29176] gi|197298266|gb|EDY32812.1| hypothetical protein RUMLAC_01414 [Ruminococcus lactaris ATCC 29176] Length = 149 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ G +Q+ LG+ LG + Q + +YEKG + L ++++ E Sbjct: 1 MAIGERIHHFRLLRGFTQKYLGQQLGFSESQADVRIAQYEKGARSPKENYLNALADIFEI 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|228975724|ref|ZP_04136261.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784000|gb|EEM32042.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 142 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 2 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60 >gi|218660254|ref|ZP_03516184.1| hypothetical protein RetlI_11854 [Rhizobium etli IE4771] Length = 280 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ + +L G++ + K E+G L I+ V + FF Sbjct: 101 IGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHFF 160 Query: 75 DVSPTV 80 Sbjct: 161 KADKEE 166 >gi|146318591|ref|YP_001198303.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320791|ref|YP_001200502.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145689397|gb|ABP89903.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145691597|gb|ABP92102.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] Length = 168 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 12 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 66 >gi|90415002|ref|ZP_01222963.1| hypothetical helix-turn-helix XRE-family like protein [Photobacterium profundum 3TCK] gi|90323872|gb|EAS40475.1| hypothetical helix-turn-helix XRE-family like protein [Photobacterium profundum 3TCK] Length = 115 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR+ R ++Q K+ + LG+ Q E G A L I+++L++ F Sbjct: 24 QRIRVARECRELTQVKIAKYLGLARQTYLDIETGKTEPKAGTLLAIAQILKTDYRFLLTG 83 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 + ++ F + L Sbjct: 84 EKYNGGIPLTADDVNQYFARNCGDIHL 110 >gi|126699634|ref|YP_001088531.1| putative phage regulatory protein [Clostridium difficile 630] gi|254975609|ref|ZP_05272081.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092997|ref|ZP_05322475.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255101147|ref|ZP_05330124.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255307021|ref|ZP_05351192.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|255314738|ref|ZP_05356321.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255517412|ref|ZP_05385088.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255650522|ref|ZP_05397424.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|260683623|ref|YP_003214908.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260687283|ref|YP_003218417.1| putative phage regulatory protein [Clostridium difficile R20291] gi|306520479|ref|ZP_07406826.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] gi|115251071|emb|CAJ68902.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209786|emb|CBA63606.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260213300|emb|CBE04858.1| putative phage regulatory protein [Clostridium difficile R20291] Length = 123 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R L ++Q++L +GIT + +YE + + + +++ LE+ + Sbjct: 4 LGDRIANLRKELDINQKELATKVGITEASLSRYENNLREPKSEIIVRLAKALETSTDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 V+ IS E+ +++ +S + Sbjct: 64 GVNDNTK--ISKEDKLIIENLSVSE 86 >gi|20065987|ref|NP_612853.1| putative CI-like transcriptional repressor [Clostridium phage phi3626] gi|168211659|ref|ZP_02637284.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|19908318|gb|AAL96794.1| putative CI-like transcriptional repressor [Clostridium phage phi3626] gi|170710397|gb|EDT22579.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] Length = 240 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 50/101 (49%), Gaps = 5/101 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPIS 71 +N+G+RI+ +R +G++ +++ + L V +YE + + S L+ ++E+L++ S Sbjct: 1 MNIGQRIKEKRKSMGLTVDEVAKKLNKNRATVYRYESNDIENLPISILEPLAEILQTTPS 60 Query: 72 FFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + + + ++ + + I + R F +I Sbjct: 61 YLMGWEDNELNSYENLNKSKKLKELILSR--YNSIREFSKI 99 >gi|54302995|ref|YP_132988.1| transcriptional regulator [Photobacterium profundum SS9] gi|46916423|emb|CAG23188.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 120 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 6/103 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR+ R ++Q L + LG+ Q E G A L I+++L + F + Sbjct: 13 QRIRVARECRELTQTSLAKYLGVARQTYLDIETGKTEPKAGILLAIAQILR--ADYLFLL 70 Query: 77 SPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQ-IDDVKV 115 + T D + N + + + R + I+D KV Sbjct: 71 TGTAKPDQYTTDAAANKLHSLMGGKVEIDDIRMIVSFINDHKV 113 >gi|317120864|ref|YP_004100867.1| hypothetical protein Tmar_0015 [Thermaerobacter marianensis DSM 12885] gi|315590844|gb|ADU50140.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 73 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R G +Q + LGI+ + +YE G+ ++++ PI F S Sbjct: 8 QLRKARGWTQYDVARMLGISRARYSQYELGLRNPPIDVAIRLADLFGVPIQELFPTSQPG 67 Query: 81 CSDISS 86 + +S Sbjct: 68 HARQAS 73 >gi|308187448|ref|YP_003931579.1| hypothetical protein Pvag_1947 [Pantoea vagans C9-1] gi|308057958|gb|ADO10130.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 185 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 7/111 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R+ R +G+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLAQIRQTMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + P + +++++ S L+L ID+ + ++ + L+ + Sbjct: 69 EPKPHAEPKVIVRASDLLEIGSQGVSLKL------IDNGRAQRTLGMLLET 113 >gi|300853815|ref|YP_003778799.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433930|gb|ADK13697.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 435 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++ L + I + Sbjct: 7 LGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAGELNTSIEYLM 65 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I + N+ + Sbjct: 66 ESEETQAQKICTYFENIAE 84 >gi|326789828|ref|YP_004307649.1| hypothetical protein Clole_0718 [Clostridium lentocellum DSM 5427] gi|326540592|gb|ADZ82451.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 122 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R L ++QE GE LG+ + K E G N + + I + Sbjct: 3 ERIKSVRKALNLTQENFGEKLGVRKTAISKLENGENNLTEQMQKLICNEFNVNEEWLRTG 62 Query: 77 SPTVCSDISSEEN 89 + + + + +E Sbjct: 63 NGEMFNQMDRDEE 75 >gi|291536229|emb|CBL09341.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 98 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 11/98 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +I+ R ++Q +L + L IT V +E G++ + L ++ + F Sbjct: 2 IADKIKRLREASHLTQTELAKKLNITRSSVNAWEMGISVPSTTYLIELALLFHVSTDFLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL---QLNRYFIQ 109 + DIS+ +S + + +L YF Sbjct: 62 GLEQNNTIDIST--------LSEREAILVYELVDYFTS 91 >gi|238925877|ref|YP_002939395.1| hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656] gi|238877554|gb|ACR77261.1| Hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656] Length = 105 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 6 VGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADTLL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 DV + +++E ++ + + Sbjct: 66 IDVVAHSVTGVTNELTEKIEKLPIKE 91 >gi|282600828|ref|ZP_05979816.2| conserved domain protein [Subdoligranulum variabile DSM 15176] gi|282571049|gb|EFB76584.1| conserved domain protein [Subdoligranulum variabile DSM 15176] Length = 82 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R M+Q L E +G++ Q + EKG + + I + L+ + F Sbjct: 23 KLKAARAEKDMTQGALAEAVGVSRQTINAIEKGEYNPTINLCKSICKALDKTLDDLF 79 >gi|222152419|ref|YP_002561594.1| DNA-binding phage protein [Streptococcus uberis 0140J] gi|222113230|emb|CAR40725.1| putative DNA-binding phage protein [Streptococcus uberis 0140J] Length = 204 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + +G RI+ R+ GM+ E+ G+ + V +EKG N RL+ I+++ Sbjct: 7 NKLIGSRIKNIRLEKGMTLEEFGKLFNASKSSVYGWEKGRNLPNKERLKQIAKI 60 >gi|196251088|ref|ZP_03149768.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196209382|gb|EDY04161.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 46 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 25/45 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 + +G++I+ R G+SQE+L E LG++ V K+E G Sbjct: 1 MTLGEKIKKARTEAGLSQEQLSEKLGVSRSAVAKWESGKGLPDID 45 >gi|160892204|ref|ZP_02073207.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC 8492] gi|270296185|ref|ZP_06202385.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156858682|gb|EDO52113.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC 8492] gi|270273589|gb|EFA19451.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 161 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G R+ + R M+QE+L G+ + K EKG V L ++ L Sbjct: 19 IGNRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYNVSIDILSKVTSALG 71 >gi|258516791|ref|YP_003193013.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780496|gb|ACV64390.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 109 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R ++ +L + I+ + + E ++ I + LE + Sbjct: 7 MDIGKRIKELRKTRKLTTRQLADLSDISQPVISRLENNERSADVELIKRICKALEITLQD 66 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + E + V+D Sbjct: 67 FFTTQEPEQEPLPPEAHRVID 87 >gi|257438000|ref|ZP_05613755.1| putative toxin-antitoxin system, toxin component [Faecalibacterium prausnitzii A2-165] gi|257199660|gb|EEU97944.1| putative toxin-antitoxin system, toxin component [Faecalibacterium prausnitzii A2-165] Length = 96 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+ R G++QE+L LG+ + Q V + E G L +S +L Sbjct: 6 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + S + ++ +++ +ST Sbjct: 66 YLLMGSEPSKEKVKNDLLSIISELST 91 >gi|228937919|ref|ZP_04100546.1| Transcription regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228962246|ref|ZP_04123679.1| Transcription regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228970800|ref|ZP_04131440.1| Transcription regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977375|ref|ZP_04137770.1| Transcription regulator [Bacillus thuringiensis Bt407] gi|228782352|gb|EEM30535.1| Transcription regulator [Bacillus thuringiensis Bt407] gi|228788925|gb|EEM36864.1| Transcription regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228797415|gb|EEM44595.1| Transcription regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228821710|gb|EEM67711.1| Transcription regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938399|gb|AEA14295.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 114 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R +QE LG+ +G + + + YE + +S+ LE F Sbjct: 3 IGARIKKLRKQRNWTQEILGKKVGASSRVIGYYESEERFPSPDTIAKLSDTLEVTTDFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + ++ +M+ + T Sbjct: 63 GRGNELDIKKHTKFKEIMERLDT 85 >gi|228936772|ref|ZP_04099562.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229199177|ref|ZP_04325858.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293] gi|228584283|gb|EEK42420.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293] gi|228822891|gb|EEM68733.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 79 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFF 74 F Sbjct: 66 EIF 68 >gi|227357896|ref|ZP_03842243.1| hypothetical protein HMPREF0693_3134 [Proteus mirabilis ATCC 29906] gi|227161901|gb|EEI46923.1| hypothetical protein HMPREF0693_3134 [Proteus mirabilis ATCC 29906] Length = 102 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N ++ +G IR R +GMS LGE L ++ QQ+ + E G + + + L Sbjct: 6 NELNSRIGAYIRKTRKEMGMSALVLGEKLNMSQQQISRCENGKTNLTFEFINKVLVALN 64 >gi|212694682|ref|ZP_03302810.1| hypothetical protein BACDOR_04213 [Bacteroides dorei DSM 17855] gi|212663183|gb|EEB23757.1| hypothetical protein BACDOR_04213 [Bacteroides dorei DSM 17855] Length = 67 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 21/55 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ I R M+Q KL E +G + + E G S I+ L + Sbjct: 7 GQIIEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPKVSTFYRIASALGLNV 61 >gi|167839985|ref|ZP_02466669.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 95 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 25/71 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLLT 68 Query: 76 VSPTVCSDISS 86 S V Sbjct: 69 PSGEVSESAPH 79 >gi|167463790|ref|ZP_02328879.1| Transcriptional regulator, xre family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 112 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG RI+ R+ ++Q + + +G E + LQ I++ L+ + Sbjct: 1 MNVGDRIKDLRIKKKLTQSDMAKKIGTGRANYAHMENNRVEIKHEFLQAIAKELDVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 S + SD + + + DG+ L Sbjct: 61 LLGNSNSTVSDAHDLKKFLDQNMILFDGIPLTE 93 >gi|124010294|ref|ZP_01694946.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla marina ATCC 23134] gi|123983628|gb|EAY24073.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla marina ATCC 23134] Length = 121 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R +SQ+++ L + Q K EKG + L+ I + L ++ Sbjct: 1 MEIGDKIKKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNIEVAE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F VS + ++ S + ++++ + + L Sbjct: 61 LF-VSDQLFKNVDSLDKSLVEKVHLLEQLD 89 >gi|118472941|ref|YP_890853.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118174228|gb|ABK75124.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 472 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G++Q L LG++ + + E V L +SE + P +F Sbjct: 5 FIGPRLRRLREEHGLTQVALARALGLSTSYINQLENDQRPVTVPVLLSLSERFDLPTHYF 64 Query: 74 FDVSPT 79 S Sbjct: 65 TPDSDA 70 >gi|291525638|emb|CBK91225.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291540997|emb|CBL14108.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 116 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 12 DIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 DI VG +R R G +Q + E L +++ + E+G +R+ + I Sbjct: 4 DIYAVGNTLRSIRNKYGYTQNDMAESLDVSYIHYSQIEQGRHRMSLELMLKIVTKYGVDP 63 Query: 71 SFFFDVSPTVCSD 83 + F + + Sbjct: 64 NTLFGIESREKHE 76 >gi|256852137|ref|ZP_05557524.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260661294|ref|ZP_05862207.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282931547|ref|ZP_06337045.1| DNA-binding protein [Lactobacillus jensenii 208-1] gi|256615549|gb|EEU20739.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260547749|gb|EEX23726.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281304321|gb|EFA96425.1| DNA-binding protein [Lactobacillus jensenii 208-1] Length = 136 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R +SQE++ L I+ Q + K+E G + +L +S++ + + Sbjct: 6 ERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYL 62 >gi|251788780|ref|YP_003003501.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537401|gb|ACT06022.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 72 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + G+R++ R+ G+SQE + G+ + E+GV + I++ Sbjct: 2 KNTKDITARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADG 61 Query: 66 LESPISFFFD 75 LE + FD Sbjct: 62 LEIQLQSLFD 71 >gi|239627346|ref|ZP_04670377.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517492|gb|EEQ57358.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 17/115 (14%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ V K IR R +S ++L + G++ + + E+G S L +S ++ Sbjct: 2 DSMNLIVAKNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGNPTISTLWKLSNGMKV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL------NRYFIQIDDVKVRQ 117 P FD ++ + + + T + L + + D + R+ Sbjct: 62 P----FDA-------LTVRPKSPYEIVDTAELQPLLEDGGKVKNYSIFPDDENRR 105 >gi|167588868|ref|ZP_02381256.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 177 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 28/87 (32%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R L ++ + GI+ + + E+G + L I+ L I F Sbjct: 2 GNRIRTLRRQLKLTLDVTAASAGISKPFLSQIERGRAMPSIASLVGIARALGVTIDHFVG 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + E + L Sbjct: 62 APGDAPTACRCEAPPQPGAEAIAHALA 88 >gi|90581156|ref|ZP_01236955.1| Hypothetical transcriptional regulator [Vibrio angustum S14] gi|90437677|gb|EAS62869.1| Hypothetical transcriptional regulator [Vibrio angustum S14] Length = 125 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKEAREWKGLTQVHMAQQLKVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 ---DVSPTVCSDISSEENNVMDFIS 96 + + S+ E + ++ F S Sbjct: 68 YGDEGIEILESEYKEEIDRLLQFFS 92 >gi|23100594|ref|NP_694061.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778827|dbj|BAC15095.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 66 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++L RM ++Q++L GIT Q V EKG I++ LE ++ F Sbjct: 3 NRVKLTRMEKNLTQQQLAARTGITRQTVGLIEKGQYNPSLQLCIKIAKELEVTLNDLF 60 >gi|320201133|gb|EFW75716.1| putative transcription regulator [Escherichia coli EC4100B] Length = 150 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 3 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSV 58 >gi|313638392|gb|EFS03596.1| helix-turn-helix XRE-family like protein [Listeria seeligeri FSL S4-171] Length = 167 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++VG RIR R M+Q++LG LG ++ +YE G L ++EVL Sbjct: 1 MSVGSRIRRVRKFRDMTQKELGIALGYDEKSADVRITQYETGTRTPKIDVLNAMAEVLNV 60 Query: 69 PI 70 + Sbjct: 61 NV 62 >gi|309792250|ref|ZP_07686722.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] gi|308225791|gb|EFO79547.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] Length = 181 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 36/71 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G++ +++ + G+T + + E+ + + L+ +++ ++ Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSDGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60 Query: 73 FFDVSPTVCSD 83 FF+ + + Sbjct: 61 FFEGEDSQQAG 71 >gi|258447185|ref|ZP_05695335.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A6300] gi|257854198|gb|EEV77151.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A6300] Length = 173 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KR++ R GM+ +LG +G T VQ+YE G + + ++ I+ L ++ Sbjct: 74 KRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAYLMG 133 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 ++ ++ ++ + Sbjct: 134 WVEENDDEVQHRAAHLEGELTDDE 157 >gi|218752098|ref|ZP_03530894.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] Length = 93 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPT 79 T Sbjct: 65 ASQDDT 70 >gi|206969718|ref|ZP_03230672.1| DNA-binding protein [Bacillus cereus AH1134] gi|206735406|gb|EDZ52574.1| DNA-binding protein [Bacillus cereus AH1134] Length = 190 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 I++ L P+S V V E V + F T + G++++R Sbjct: 61 WKITKGLSIPLSRLMVVGEPVAVARCGEGFAVDEGQAWHLETMFRYTKETGMEMHRA 117 >gi|152983209|ref|YP_001352574.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151283286|gb|ABR91696.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 207 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I +G RI R G +Q+KL G T + K E L I++VL++ Sbjct: 14 SIEIQLGGRISKLRTSRGFTQDKLALETGFTKGYLSKIENSKVIPPIGTLVKIAQVLDTD 73 Query: 70 ISFFFD 75 +S + Sbjct: 74 LSALLE 79 >gi|149202477|ref|ZP_01879449.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143759|gb|EDM31793.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 215 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 35/84 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L ++ + K E G + LQ ++ L P+ Sbjct: 27 LEVAIGREVRAYRKKQNITVAELSNMTELSIGMLSKIENGNTSPSLTTLQTLAHALSVPL 86 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + ++ ++ Sbjct: 87 TAFFKEYEERREAVHTKAGQGVEI 110 >gi|120555195|ref|YP_959546.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325044|gb|ABM19359.1| putative transcriptional regulator, XRE family [Marinobacter aquaeolei VT8] Length = 74 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ +R R G SQE+L GI V K E+G + ++ +E+LE Sbjct: 10 GRNLRAIRKSKGFSQERLAHDAGIDRSYVGKIERGEVNITLEKIYVFAELLECSPKDLM 68 >gi|325527860|gb|EGD05122.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 185 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 79 T 79 Sbjct: 74 P 74 >gi|323463421|gb|ADX75574.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 182 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V + ++ R +S +K+ + GI+ + + EKGV + L I+ L P+ Sbjct: 4 INTVVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLRIPL 63 Query: 71 SFFFDVSPTVCSDISSEE 88 + I + Sbjct: 64 TSLISEENEAIQKIDRSD 81 >gi|319412023|emb|CBY91956.1| putative transcriptional regulator [Streptococcus pneumoniae] Length = 158 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|317488433|ref|ZP_07946986.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325832081|ref|ZP_08165178.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316912477|gb|EFV34033.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325486402|gb|EGC88854.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 254 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 14/114 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R +SQ +L LG++ Q V K+E + +L + ++ E + Sbjct: 6 NLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDDLVRGD 65 Query: 78 ----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 T I E DG D +R++ ++ S+ Sbjct: 66 LTGCATASEAIVEAEPASAAMPVDKDGY----------DEHMRRRAWDVAASVA 109 >gi|183217341|gb|ACC59260.1| antitoxin PezA [Streptococcus pneumoniae] Length = 158 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|296102221|ref|YP_003612367.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056680|gb|ADF61418.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 191 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ + RIRL R G S +L + G++ + K E+G + A+ L +S Sbjct: 4 ITDTMNQRISARIRLERESRGWSLSELADRAGVSRAMIHKIERGDSSPTATLLARLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|291618017|ref|YP_003520759.1| PuuR [Pantoea ananatis LMG 20103] gi|291153047|gb|ADD77631.1| PuuR [Pantoea ananatis LMG 20103] Length = 185 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R+ R +G+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ++ ++++ S L+L ID+ ++ + L+ + Sbjct: 69 EPHSQDAPNVVVRPEDLLEIGSRGVSLKL------IDNGTPKRALGMLLET 113 >gi|225352439|ref|ZP_03743462.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156946|gb|EEG70315.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 167 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R M+QE+L LG++ Q + K+E +L + ++ + V Sbjct: 5 ENLQYLRGSRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMLCDMFGVTLDDL--V 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 V + +D + DG+ Sbjct: 63 MGDVRASAGCGGAGRVDLAADTDGVA 88 >gi|218290563|ref|ZP_03494672.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239466|gb|EED06662.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 205 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 5/123 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPISFFFD 75 R++ R G+SQE+L E LGI + YE N RL+ I++ + Sbjct: 6 RLKTLREQRGISQERLAEILGIPRSSIAHYESPENDRLPRPERLKKIADFFGVTTDYLIG 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELVRSIVSSEKKY 133 + + + I T + +L ++ K ++ + +RS + Sbjct: 66 RTNDPHGHAIVNFAD-SEPIVTAEERRLLETVRELPPEKKQELMDFADFLRSRAVENSRK 124 Query: 134 RTI 136 I Sbjct: 125 EQI 127 >gi|194018000|ref|ZP_03056607.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194010337|gb|EDW19912.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 77 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE + LGI+ + + E+G + I++ L + Sbjct: 7 GRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVDQIADALNITV 61 >gi|196038315|ref|ZP_03105624.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225865525|ref|YP_002750903.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228916172|ref|ZP_04079742.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930568|ref|ZP_04093562.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229185777|ref|ZP_04312953.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|196030723|gb|EDX69321.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225790340|gb|ACO30557.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228597689|gb|EEK55333.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|228829089|gb|EEM74732.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843370|gb|EEM88448.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 2 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60 >gi|163745989|ref|ZP_02153348.1| helix-turn-helix domain protein, putative [Oceanibulbus indolifex HEL-45] gi|161380734|gb|EDQ05144.1| helix-turn-helix domain protein, putative [Oceanibulbus indolifex HEL-45] Length = 133 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 16/139 (11%) Query: 7 IPNPVD------INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + + +D G R+ R GM+Q L + LG+ ++ +E+ ++ A+RL Sbjct: 1 MTDEIDWYGPEAATFGDRVAAAREQTGMTQAMLAKRLGVRLATLRGWEEDLSEPRANRLS 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ +L + + + + + + + L R +R ++ Sbjct: 61 MLAGLLNVSMMWLINGEGEGVD--APDAGETARRVDLEEVLADMRA--------LRTDLL 110 Query: 121 ELVRSIVSSEKKYRTIEEE 139 + ++ EK+ R + E Sbjct: 111 KKAETVGKLEKRIRRLMTE 129 >gi|160902864|ref|YP_001568445.1| XRE family transcriptional regulator [Petrotoga mobilis SJ95] gi|160360508|gb|ABX32122.1| transcriptional regulator, XRE family [Petrotoga mobilis SJ95] Length = 178 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 37/79 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R++ M+QE+L +T + + E+ + L+ I L + + Sbjct: 1 MQIGEKIKSLRIMRNMTQEELATRSDLTRGFISQVERDLASPTVENLEMILRALGTDLKD 60 Query: 73 FFDVSPTVCSDISSEENNV 91 FF + ++E+ + Sbjct: 61 FFSNLENKEKIVFTKEDRI 79 >gi|116619051|ref|YP_819422.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097898|gb|ABJ63049.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 183 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 14/92 (15%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R + ++Q +L L ++ + + +E G + IS+ L + F Sbjct: 7 IKEKRQKMSLTQMELANKLLVSNKTISNWETGKTLPDIENIILISKYLNISLDDLFLGDE 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 T+ + + R F +I Sbjct: 67 TMVGKLRENQQE--------------RKFYRI 84 >gi|88801551|ref|ZP_01117079.1| transcriptional regulator, PBSX family protein [Polaribacter irgensii 23-P] gi|88782209|gb|EAR13386.1| transcriptional regulator, PBSX family protein [Polaribacter irgensii 23-P] Length = 64 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR+ R ++Q L E +G++ Q + E + ++ E + + FD Sbjct: 5 IRVERARHRLTQGDLAEKVGVSRQTIYAIENNKFNPSVTLAIKMARYFEVTVEYLFDSEE 64 >gi|322411791|gb|EFY02699.1| transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 158 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGDNIKSLRHTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 56 >gi|311894823|dbj|BAJ27231.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 191 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R+ G + + L G++ V + E+ + +++ L I+ D Sbjct: 13 RNLKRLRLERGHTLDALAARSGVSRGMVVQIEQARTNPSVGTVVRLADALGVSIARLLDY 72 Query: 77 SPTVCSDISSEENNV 91 + I+ E+ V Sbjct: 73 DASSEVRITPVEDAV 87 >gi|302545536|ref|ZP_07297878.1| HTH_3 family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463154|gb|EFL26247.1| HTH_3 family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 81 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+ + R +S++ L E +G+ +Q + E+G ++E + P+ Sbjct: 4 QVHNRLAMVRAERKVSRQALAEAVGVHYQTIGYIERGQYNPSLDLALRVAEFFDLPVEAL 63 Query: 74 FDVSP 78 F + P Sbjct: 64 FSLRP 68 >gi|227484868|ref|ZP_03915184.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227237228|gb|EEI87243.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 145 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R L +S K E LG++ + E+G N + ++ I + ++ Sbjct: 32 NRLKQLRTTLKLSGAKFAEPLGVSRSAISDIERGRNNLSEQMIKLICTTYKVNENWLRLG 91 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKIIE 121 + I+S++ + D D L+L + + + D +R K ++ Sbjct: 92 EGDMF--IASDKIPLDDLTKDADPLELAILKAYFSL-DKDLRSKALQ 135 >gi|148994210|ref|ZP_01823503.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] gi|147927351|gb|EDK78382.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] Length = 158 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|153955450|ref|YP_001396215.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855863|ref|YP_002472985.1| hypothetical protein CKR_2520 [Clostridium kluyveri NBRC 12016] gi|146348308|gb|EDK34844.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569587|dbj|BAH07571.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 12/127 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-- 75 R++ R + Q+++ + L IT YE+G L I+E I + Sbjct: 5 RLKKLRNEKNLLQKEIAKKLKITTSAYGFYEQGKRTPDTEILNKIAEFYNVSIDYLLGRT 64 Query: 76 ---VSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIV 127 S ++ + + +F + + LQL F Q D K +II ++++I Sbjct: 65 NIRDSADKITNSLNSNPELSEFWNSLRNREDLQLL--FKQTKDLSPKNINQIIRIIKAIK 122 Query: 128 SSEKKYR 134 E + + Sbjct: 123 DDEGRTK 129 >gi|148977326|ref|ZP_01813940.1| transcriptional regulator, XRE family protein [Vibrionales bacterium SWAT-3] gi|145963439|gb|EDK28703.1| transcriptional regulator, XRE family protein [Vibrionales bacterium SWAT-3] Length = 186 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG ++ R G S +K + G++ + + E G + ++L I+ E S Sbjct: 5 IKVGTNLKRLRQEKGWSLDKAAKATGVSKAMLGQIELGESSPTVAKLWQIASGFEVSFSS 64 Query: 73 FFDVSP--------TVCSDISSEENNVMDFIS 96 F S +++ EE NV F+S Sbjct: 65 FITESSNNELTSLFRDANELRREEYNVGFFVS 96 >gi|6010627|gb|AAF01192.1|AF179401_1 putative epoxidase [Sinorhizobium meliloti] Length = 176 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ + +L G++ + K E+G L I+ V + FF Sbjct: 15 IGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHFF 74 Query: 75 DVSPTV 80 + Sbjct: 75 NADKEE 80 >gi|86134426|ref|ZP_01053008.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85821289|gb|EAQ42436.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 198 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 NVGK I+ +R+ G S E+L G++ + +Q+ E + LQ I++ L+ I Sbjct: 4 NVGKIIKAKRISKGYSIEELSHRSGVSAKTIQRLENDLTNPRGFTLQKIADALDIDI 60 >gi|186681347|ref|YP_001864543.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186686686|ref|YP_001869880.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186686753|ref|YP_001869946.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186687045|ref|YP_001870434.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186687122|ref|YP_001870265.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463799|gb|ACC79600.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] gi|186469105|gb|ACC84905.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] gi|186469425|gb|ACC85224.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] gi|186469571|gb|ACC85369.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] gi|186469669|gb|ACC85466.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 155 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQ 60 + K PN D ++ + R L ++Q +L + GI + V K E+G+ ++ LQ Sbjct: 1 MDTFKTPNS-DESLASYVSRVRKKLNLTQSELADAAGIHGRSVGKIERGLTLKINRRTLQ 59 Query: 61 HISEVLESPISFF 73 ++ L P +F Sbjct: 60 GLAIALGVPQEYF 72 >gi|325282101|ref|YP_004254643.1| helix-turn-helix domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324313910|gb|ADY34463.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM 20712] Length = 110 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VG+ I+ R+ ++QE+LGE +G+ Q+ K E G + S ++ + + L Sbjct: 40 FVGEAIKNARLKQHLTQEELGERIGVKRSQICKLENGNCSITLSTMRRVFKALGI 94 >gi|288870587|ref|ZP_06114632.2| putative transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288866654|gb|EFC98952.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 260 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR R + +L LG+ ++ YE G + +L+ I++ L P+ D Sbjct: 47 GTKIRRIRSQKDTTVVELANALGVNEAAIRNYEIGYRQASRDKLELIAQRLGVPVETLID 106 Query: 76 VSPTVCSDI 84 +D Sbjct: 107 RQIDSYNDA 115 >gi|239932677|ref|ZP_04689630.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 181 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 11/109 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R ++ L E GI+ + + E G+ R L I++ + P+ Sbjct: 2 GPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELVG 61 Query: 76 VSPTVCSDISSEENNVMD-----FISTPDGLQLNRYFIQIDDVKVRQKI 119 P + S+ P GLQ + ++ R+K+ Sbjct: 62 APPVGDPRVRSKPIERYGRTHWPLTRQPGGLQ---AYKVLEP---RRKL 104 >gi|229014833|ref|ZP_04171932.1| hypothetical protein bmyco0001_52230 [Bacillus mycoides DSM 2048] gi|228746463|gb|EEL96367.1| hypothetical protein bmyco0001_52230 [Bacillus mycoides DSM 2048] Length = 51 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQE L +G+ + + E G I++VL++PI F Sbjct: 1 MSQEDLANKVGVRRETIGNLENGKYNPSLKLAYDIAQVLKAPIEVLF 47 >gi|198244633|ref|YP_002215542.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939149|gb|ACH76482.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 185 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R+ R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 19 LRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 76 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 77 PQAEFPPTFDPQQQAMVITP 96 >gi|170016676|ref|YP_001727595.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803533|gb|ACA82151.1| Transcriptional regulator [Leuconostoc citreum KM20] Length = 123 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+L R ++Q +L + + + YE N L I+E L + + + Sbjct: 7 RIKLLRKQKQLTQSELANIISASRMAIANYETNRNTPSLGMLSLIAEALNTTTDYLQGKT 66 Query: 78 PTVCSDISSEE 88 + ++S E Sbjct: 67 DSPVRNLSQEA 77 >gi|168819389|ref|ZP_02831389.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343670|gb|EDZ30434.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085906|emb|CBY95680.1| Uncharacterized HTH-type transcriptional regulator ydcN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 178 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R+ R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|168260202|ref|ZP_02682175.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350640|gb|EDZ37271.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|326623288|gb|EGE29633.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 178 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R+ R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|151220478|ref|YP_001331300.1| hypothetical protein NWMN_0266 [Staphylococcus aureus subsp. aureus str. Newman] gi|150373278|dbj|BAF66538.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] Length = 173 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KR++ R GM+ +LG +G T VQ+YE G + + ++ I+ L ++ Sbjct: 74 KRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAYLMG 133 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 ++ ++ ++ + Sbjct: 134 WVEENDDEVQHRAAHLEGELTDDE 157 >gi|83590551|ref|YP_430560.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573465|gb|ABC20017.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 152 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 33/78 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+R+ R +SQ ++ + L + + YEK R L+ +++ + I + Sbjct: 2 KSLGERLAFLRKERALSQAEMAKLLNMGQSTIAMYEKNKRRPDPETLERLADFFDVSIDY 61 Query: 73 FFDVSPTVCSDISSEENN 90 + + + ++ Sbjct: 62 LLGRADSRQKETYPLQDE 79 >gi|16079688|ref|NP_390512.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221310566|ref|ZP_03592413.1| hypothetical protein Bsubs1_14416 [Bacillus subtilis subsp. subtilis str. 168] gi|221314890|ref|ZP_03596695.1| hypothetical protein BsubsN3_14337 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319812|ref|ZP_03601106.1| hypothetical protein BsubsJ_14253 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324091|ref|ZP_03605385.1| hypothetical protein BsubsS_14387 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312135|ref|YP_004204422.1| putative Xre family transcriptional regulator [Bacillus subtilis BSn5] gi|1176724|sp|P45902|YQAE_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yqaE gi|1217833|dbj|BAA06918.1| ORF7 [Bacillus subtilis] gi|1303723|dbj|BAA12379.1| YqaE [Bacillus subtilis] gi|2635080|emb|CAB14576.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis subsp. subtilis str. 168] gi|320018409|gb|ADV93395.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis BSn5] Length = 116 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R ++Q+ + + LGIT YE G L +IS +L+ + + Sbjct: 4 ENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYLLKG 63 Query: 77 SPTV---CSDISSEENNVMDFISTPDG---LQLNRYFIQIDDVKVRQK 118 + N+ F++ DG ++ + ++I +++++ Sbjct: 64 ESNEKVFQDEAKKVLNDPETFLAAKDGEVTDEILQAALEIITEQLKER 111 >gi|260062047|ref|YP_003195127.1| hypothetical protein RB2501_10657 [Robiginitalea biformata HTCC2501] gi|88783609|gb|EAR14780.1| hypothetical protein RB2501_10657 [Robiginitalea biformata HTCC2501] Length = 605 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 33/75 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ + +R G+SQE+L +T + +Q+ EKG ++ ++ L + Sbjct: 1 MTLGENLIYQRKKQGLSQEELAGKTQVTVRTIQRIEKGDVNPHLQTVKLLAAALSVEVED 60 Query: 73 FFDVSPTVCSDISSE 87 + I ++ Sbjct: 61 LMPIDNPREETIQAK 75 >gi|84502833|ref|ZP_01000946.1| acetolactate synthase II large subunit [Oceanicola batsensis HTCC2597] gi|84388816|gb|EAQ01686.1| acetolactate synthase II large subunit [Oceanicola batsensis HTCC2597] Length = 129 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 12/110 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ + R +G SQ + E +G++ + YEKG + L + E E + + Sbjct: 2 GARLTIARNEIGFSQAAMAEAIGVSPRAYHSYEKGERGMPVEALVAMGERFEVDVPWLLL 61 Query: 76 VSPTVCS----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + ++ + D + +D T +G+ +I K R I+ Sbjct: 62 GTKSIRAGHDFDALKHIESSLDKHLTDEGI-------KIKSEK-RGAIVA 103 >gi|332361797|gb|EGJ39601.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 225 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRVELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|322391296|ref|ZP_08064766.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145722|gb|EFX41113.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 150 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 25/61 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ ++ R ++Q +L LGI+ + +E + ++ + + + Sbjct: 2 AFLGENLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTEPTLENVVKLANIFNTTTDY 61 Query: 73 F 73 F Sbjct: 62 F 62 >gi|310780515|ref|YP_003968847.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309749838|gb|ADO84499.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 178 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N+G++I+ R G++ +KL + G++ + E+ N S LQ I L Sbjct: 3 NLGEKIKFCRKEKGLTLKKLSDMTGLSVGFISNIERNQNSPSVSNLQQICAALSI 57 >gi|251781503|ref|YP_002995804.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390131|dbj|BAH80590.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 303 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++R R+ G+S+E+L G+ ++ +Q+ + E G + +++ I++ LE + + Sbjct: 4 HFGEKVRGLRLEKGISREELCGDEAELSVRQLARIELGQSIPSLAKVIFIAKALEVSVGY 63 Query: 73 FFDVS 77 D + Sbjct: 64 LTDGA 68 >gi|291295432|ref|YP_003506830.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470391|gb|ADD27810.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 186 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 10/107 (9%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P + +G R+R R+ G++ E++ + G+ + + E+ + L + L+ Sbjct: 6 PSP-SVPIGPRLRAARLAKGLTLEQVAQRSGLDKSFISRLERNATAASVASLLKVCAALD 64 Query: 68 SPISFFFDVSPTVCSDISSEENN------VMDFIST---PDGLQLNR 105 FD T + V DFI + L L R Sbjct: 65 IQPGSLFDPPSTNLVRSGEAPSAHFGGWGVRDFILSRGLRGELMLLR 111 >gi|223983720|ref|ZP_03633892.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM 12042] gi|223964312|gb|EEF68652.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM 12042] Length = 119 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FFF 74 G+ I+ R G+S+ +L + + I + + E + +L+ + FFF Sbjct: 14 GQAIKAARKAKGISRNQLADKMNIAPRYIASIENSGQHPSLQIFYELVTLLDVSVDQFFF 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 T S + ++D + D + I +VK Sbjct: 74 PDKETDKSTQRRQLETLLDSMDNKDLTVITATAKAIQEVK 113 >gi|168699329|ref|ZP_02731606.1| DNA-binding protein, putative [Gemmata obscuriglobus UQM 2246] Length = 89 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR+R R+ ++Q +LGE G+ +Q V K E+G + + +++ L F Sbjct: 16 GKRLRELRIDKNLTQSQLGERAGMMYQDVAKLERGEREPMWATVIRLADALGVRADDF 73 >gi|118471236|ref|YP_885533.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] gi|118172523|gb|ABK73419.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] Length = 189 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R GMS + +T + E+G+ V L I + L I F+ Sbjct: 5 GARLRQFRRERGMSLTDVAAKAEVTKGFLSLAERGMTNVSVPVLMRICDALGIGIGDLFE 64 >gi|30022584|ref|NP_834215.1| transcriptional regulator [Bacillus cereus ATCC 14579] gi|29898142|gb|AAP11416.1| Transcriptional regulator [Bacillus cereus ATCC 14579] Length = 190 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 11/117 (9%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 I++ L P+S V E V + F T + G++++R Sbjct: 61 WKITKGLSIPLSRLMVAGEPVAVARCGEGFAVDEGQAWHLETMFRYTKETGMEMHRA 117 >gi|50123201|ref|YP_052368.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|50123210|ref|YP_052377.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613727|emb|CAG77178.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613736|emb|CAG77187.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 132 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R+RL R +SQ +L E LG+ + ++EKGV+ + +I++VL+ + Sbjct: 18 ERLRLLREARNLSQVRLAELLGVDPRVYNRWEKGVSAPHLETVVNIADVLQVSMD 72 >gi|319794332|ref|YP_004155972.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315596795|gb|ADU37861.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 199 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + P +D + R+ R G+S +L E G++ + K E+ + A L ++ Sbjct: 10 EAPGHLDALIATRLLALRQAKGLSLAELAELSGVSKAMISKVERAQSSPTAVLLGRLAAG 69 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 L ++ + + + P+ Sbjct: 70 LGVSLAQLLTEEKEKEAPQRLRTKAMQEVWRDPEA 104 >gi|315650099|ref|ZP_07903175.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315487591|gb|EFU77898.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G IR R ++ E+L E + + + KYEKG + L IS+ L Sbjct: 6 RKIGSLIRQFRQSKALTIEELAERINKSRATLSKYEKGDIVLDVDTLYDISDALGI 61 >gi|300857320|ref|YP_003782304.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437435|gb|ADK17202.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 222 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 36/57 (63%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG++I+L R +G+SQ++L + LG++ + + + E G V + + +S++L I+ Sbjct: 4 VGQKIKLARTEMGISQKQLAKKLGVSEKFINEAESGKRIVNQNIIDKLSKILGKSIN 60 >gi|296283569|ref|ZP_06861567.1| helix-turn-helix domain protein [Citromicrobium bathyomarinum JL354] Length = 354 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+++++ R G+S L E + ++ Q + KYE+ G+ L +++ L + + Sbjct: 2 IGRKLKVARSAAGLSLRGLAEAIEGRVSAQAIGKYERDEAMPGSGVLIALADALGVSVDY 61 >gi|295110215|emb|CBL24168.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 372 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G+ + R G++Q++L LG++ V K+E G + L ++ + I Sbjct: 4 INIGRVLIKNRHKRGITQDELATHLGVSKGAVSKWETGSSLPDILLLPQLASYFDISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LIGYQPQMEQE 74 >gi|283782136|ref|YP_003372891.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440589|gb|ADB19031.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068] Length = 202 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 30/86 (34%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ V R+R R G + E+L G++ + + E+G I++ Sbjct: 13 PLQQLVCDRVRSMRKAKGWTLEQLASLSGVSRSMLSEIERGSANPTLGVAFRIAQAFGMT 72 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFI 95 + D I ++ F+ Sbjct: 73 LGDLVDSPEPPKPRIDVIRSDDRSFM 98 >gi|229170243|ref|ZP_04297926.1| Transcriptional regulator, XRE [Bacillus cereus AH621] gi|228613239|gb|EEK70381.1| Transcriptional regulator, XRE [Bacillus cereus AH621] Length = 166 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 26 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 84 >gi|153831210|ref|ZP_01983877.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] gi|148873308|gb|EDL71443.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] Length = 181 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ E+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNV 91 F P + S S ++ Sbjct: 69 FANDPQLLSSERSFPDDP 86 >gi|86361163|ref|YP_473050.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86285265|gb|ABC94323.1| putative transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 203 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 22 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPI 79 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 80 GLAEFFAFEPERPKKAFYAAQELVEI 105 >gi|50084796|ref|YP_046306.1| putative transcription regulator protein [Acinetobacter sp. ADP1] gi|49530772|emb|CAG68484.1| putative transcription regulator protein [Acinetobacter sp. ADP1] Length = 190 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 31/67 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ ++ +RI+ R+ G + ++L ++ + E+ A L+ ++ L+ Sbjct: 3 DINQHLSQRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALDIT 62 Query: 70 ISFFFDV 76 + F++ Sbjct: 63 LVSLFNI 69 >gi|331092438|ref|ZP_08341263.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401281|gb|EGG80870.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium 2_1_46FAA] Length = 190 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R + + L E G++ + + E+G+ + L IS+VL+ +S FF Sbjct: 7 IGLRIKNLRTEKKYTLKYLSENTGLSIGFLSQLERGMTSIAIDSLDKISKVLDVELSSFF 66 >gi|229172431|ref|ZP_04299990.1| Transcriptional regulator, Xre [Bacillus cereus MM3] gi|228610902|gb|EEK68165.1| Transcriptional regulator, Xre [Bacillus cereus MM3] Length = 404 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I++ L ISF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIADKLGCEISFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|212697019|ref|ZP_03305147.1| hypothetical protein ANHYDRO_01584 [Anaerococcus hydrogenalis DSM 7454] gi|212675989|gb|EEB35596.1| hypothetical protein ANHYDRO_01584 [Anaerococcus hydrogenalis DSM 7454] Length = 67 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + +I+ R G+SQ KL + +G+ + + YE I +VL+ I Sbjct: 1 MEVEIENKIKEFRKEKGLSQHKLAKMVGLKRRSIMAYENKTISPSLETAYKICKVLDKDI 60 Query: 71 SFFF 74 F Sbjct: 61 KEVF 64 >gi|183598905|ref|ZP_02960398.1| hypothetical protein PROSTU_02342 [Providencia stuartii ATCC 25827] gi|188021114|gb|EDU59154.1| hypothetical protein PROSTU_02342 [Providencia stuartii ATCC 25827] Length = 82 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN I +G IR R G+S E + L I+ + +YE+G + L +S + Sbjct: 2 KQPNFRGIALGNYIRKLRTSRGISTEAMAAALKISERNYIQYEEGSVSIYVEHLMIVSSI 61 Query: 66 LESPISFFFDV 76 L+ I +V Sbjct: 62 LDVDIKHLLEV 72 >gi|166032956|ref|ZP_02235785.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC 27755] gi|166027313|gb|EDR46070.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC 27755] Length = 104 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 17/115 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 6 VGQRIKAAREAKNLTQEELAGLVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADTLL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 DV S +++E + +++ + + +Q+II VR++V Sbjct: 66 IDVVTHSVSGVTNELSEMIEKL----------------PKEKQQRIINAVRALVE 104 >gi|124514630|gb|EAY56142.1| putative transcriptional regulator, XRE family [Leptospirillum rubarum] Length = 164 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 8/84 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLE-------SP 69 +IR R G++Q L LG V + E G + L ++ L+ P Sbjct: 33 QIRELREQRGLTQTDLANLLGKRQSVVSRLESSGEKGLSLKTLLELASALDTALVLKFVP 92 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 S F V + E+ ++D Sbjct: 93 FSRFLREYEDVSPEAMKVESYIVD 116 >gi|148554640|ref|YP_001262222.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499830|gb|ABQ68084.1| transcriptional regulator, XRE family with cupin sensor [Sphingomonas wittichii RW1] Length = 201 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ IR RR L ++ ++ ++ + E+G L +++ L+ IS+ Sbjct: 15 MSFGELIRDRRKRLKLTLNEVALRSDLSVSFISLAERGKATPSIVSLLRLAQALDVDISY 74 Query: 73 FFDVSPTVCSDISSEENNV 91 F ++P ++I + Sbjct: 75 F--LAPPQTNNILHRAADP 91 >gi|15967045|ref|NP_387398.1| putative aldehyde dehydrogenase protein [Sinorhizobium meliloti 1021] gi|307302508|ref|ZP_07582265.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307316162|ref|ZP_07595606.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|17646727|gb|AAL41014.1|AF448466_4 putative aldehyde dehydrogenase [Sinorhizobium meliloti] gi|15076318|emb|CAC47871.1| Putative aldehyde dehydrogenase [Sinorhizobium meliloti 1021] gi|306898002|gb|EFN28744.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903178|gb|EFN33768.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 182 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSVDIGSRLRQVRLRHKLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 59 GLAEFFSFEPEKSRRAFYAAEELVEI 84 >gi|300717478|ref|YP_003742281.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299063314|emb|CAX60434.1| Transcriptional regulator [Erwinia billingiae Eb661] Length = 185 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R+ R +GMSQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLSEIRQQMGMSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + ++D S L+L Sbjct: 69 EPVKDEAPKVVIDAHELIDIGSQGVSLKLI 98 >gi|282911119|ref|ZP_06318921.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282324814|gb|EFB55124.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] Length = 173 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KR++ R GM+ +LG +G T VQ+YE G + + ++ I+ L ++ Sbjct: 74 KRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAYLMG 133 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 ++ ++ ++ + Sbjct: 134 WVEENDDEVQHRAAHLEGELTDDE 157 >gi|270261258|ref|ZP_06189531.1| putative DNA-binding protein [Serratia odorifera 4Rx13] gi|270044742|gb|EFA17833.1| putative DNA-binding protein [Serratia odorifera 4Rx13] Length = 154 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 12/105 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R+ G SQE+L G++ + VQ+ E G L I+ L +S D+S Sbjct: 5 RIRQLRLEKGWSQEQLATIAGLSTRTVQRIENGEQ-ASLDTLTAIAAALGLLVS---DLS 60 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D ++ + +G ++ + VR I+ L Sbjct: 61 QAAPPDNDNQSEQAIRRQVEAEG--------KLLSMAVRFAIVGL 97 >gi|268610943|ref|ZP_06144670.1| DNA-binding phage protein [Ruminococcus flavefaciens FD-1] Length = 91 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R LG++Q + + +G+T Q V +E G + L I++ + + Sbjct: 4 ERVKELRNSLGINQVEFSKKIGVTKQCVSNWENGYIQPSIDMLIKIAKTFSVSTDYLLGI 63 Query: 77 SPTVCSDISSEENN 90 + ++ N Sbjct: 64 NDNPNLNVEGLTNE 77 >gi|160879107|ref|YP_001558075.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427773|gb|ABX41336.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 63 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ + +SQ++L + +G++ Q + EKG + I +VL + F Sbjct: 5 KLKSARVAMDLSQQQLADLVGVSRQTISLIEKGDYNPTINLCIAICKVLHKTLDELF 61 >gi|332827339|gb|EGK00099.1| hypothetical protein HMPREF9455_03565 [Dysgonomonas gadei ATCC BAA-286] Length = 131 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 11/129 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R ILG+ QE+L E +G++ Q V ++E ++ L I+ L + D Sbjct: 13 GYNAKRLREILGVKQEELAERIGVSQQTVSRFES-TPQLDDETLDKIAAALNISV----D 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 D + N V + + + Q K+IEL ++ +E++ Sbjct: 68 AIKNFSEDAA--INFVANTFHDS---TVANTYHQ-CSFNPLDKVIELYERMLKTEQEKVQ 121 Query: 136 IEEECMVEQ 144 + +E + ++ Sbjct: 122 LLQEVLKDK 130 >gi|319946413|ref|ZP_08020650.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747381|gb|EFV99637.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 88 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 1 MVGNKKIPNPVDINVGK--RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 +V N+ I + +V K ++++ R+ M+Q L + +G+T Q + E G S Sbjct: 11 IVYNRVIKTRKEKHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSL 70 Query: 59 LQHISEVLESPISFFF 74 I + L+ + F Sbjct: 71 CLAICKTLDKTLDQLF 86 >gi|302562689|ref|ZP_07315031.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302480307|gb|EFL43400.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 277 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ +R R +SQ L ++ + V E G +R A + +++ L+ P+ Sbjct: 6 VGELLRQWRHRRRLSQLDLAIAADVSARHVSLVETGKSRPSADMVLRLADQLDVPL 61 >gi|229169229|ref|ZP_04296943.1| Transcriptional regulator, Xre [Bacillus cereus AH621] gi|228614295|gb|EEK71406.1| Transcriptional regulator, Xre [Bacillus cereus AH621] Length = 190 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E L + G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEDLAQKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPIS 71 I++ L P+S Sbjct: 61 WKITKGLSIPLS 72 >gi|210610561|ref|ZP_03288487.1| hypothetical protein CLONEX_00677 [Clostridium nexile DSM 1787] gi|210152420|gb|EEA83426.1| hypothetical protein CLONEX_00677 [Clostridium nexile DSM 1787] Length = 101 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ + V + +G+RI+ R+ ++ L L I Q+ + E G +L IS+ Sbjct: 7 KEYSSDVQLQIGQRIQKLRIDKKIAAVDLAAVLDIQSNQMSRIENGRANCTVPQLYVISQ 66 Query: 65 VLESPISFF 73 +L + + Sbjct: 67 ILGCSVDYL 75 >gi|118463045|ref|YP_882635.1| transcriptional regulator [Mycobacterium avium 104] gi|254775896|ref|ZP_05217412.1| transcriptional regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|118164332|gb|ABK65229.1| transcriptional regulator, XRE family protein with cupin sensor domain [Mycobacterium avium 104] Length = 178 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L G+T + K E+G + + ++ L+ + F Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDEA 64 Query: 79 TVC 81 Sbjct: 65 ARE 67 >gi|21223966|ref|NP_629745.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|3192004|emb|CAA19403.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 71 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R R G++Q KL LG+ + YE G R L I++VL + + F Sbjct: 11 LRQIRRQRGVTQYKLAASLGVHNTAISHYENGHRRPDVETLATIADVLGARMDDF 65 >gi|302871197|ref|YP_003839833.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302574056|gb|ADL41847.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 140 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I + R +SQ++L + L I+ Q + YEKG G + L +SE L+ I F Sbjct: 13 LGLKIGILREEKRISQKELAKRLEISPQALANYEKGKRMPGINILVRLSEELDVSIDFLL 72 Query: 75 DVSP--TVCSDISSEENNVMDFISTPDGL 101 ++ S + E+ +++ I + + Sbjct: 73 GLTDIRKPRSRMVKEQLEMLESIQEKEEI 101 >gi|297560527|ref|YP_003679501.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844975|gb|ADH66995.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 202 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 3/81 (3%) Query: 7 IPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + +D VG R+R R + L GI+ + + E G R L ++ Sbjct: 1 MEHDLDQALDAVGPRLRALRKQKETTLTDLSAATGISVSTLSRLESGSRRPTLELLFPLA 60 Query: 64 EVLESPISFFFDVSPTVCSDI 84 + D PT I Sbjct: 61 RAYGVTLDELVDAPPTGDPRI 81 >gi|225028236|ref|ZP_03717428.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] gi|224954415|gb|EEG35624.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] Length = 490 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R ++Q +L E GI + + E +LQ I+EVL + F+ Sbjct: 13 IIAKRKEQKLTQAQLAEMTGINRGMISRLESCDYTPSIDQLQSIAEVLNFEVVDLFEDDK 72 Query: 79 TVCS 82 S Sbjct: 73 VTSS 76 >gi|224535292|ref|ZP_03675831.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus DSM 14838] gi|224523100|gb|EEF92205.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus DSM 14838] Length = 103 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+ +R RR L ++Q++L E +G + + EKG + S I+ L Sbjct: 44 GEILRDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARALGI 96 >gi|221213709|ref|ZP_03586683.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221166498|gb|EED98970.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 81 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 25/56 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+ R G SQEKL G+ V E+G + + ++E L P S Sbjct: 10 GKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVPPS 65 >gi|218133061|ref|ZP_03461865.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] gi|217991934|gb|EEC57938.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] Length = 225 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R GM+Q++L +GI+ + + K+E G + + L+ + + L ++ Sbjct: 6 IGRFIAETRNQAGMTQKELAGKIGISDKTISKWECGKSMPDITYLETLCDSLAISMNEL- 64 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 +S SD + + +S Sbjct: 65 -ISGERLSDTAYSPKAEENIMS 85 >gi|110800265|ref|YP_696047.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110674912|gb|ABG83899.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 114 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R ++Q +L L + + YE+ LQ +S + + Sbjct: 3 GNRLKTLRKEKDLTQAQLANILKTSASAIGMYEQNRRTPDTETLQTLSNYFNVSVDYLIG 62 Query: 76 -VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ E+ +V + +G+ Sbjct: 63 KTEIRESAEQLLEDKSVTIALHNKNGID 90 >gi|66396062|ref|YP_240415.1| ORF022 [Staphylococcus phage 71] gi|62636481|gb|AAX91592.1| ORF022 [Staphylococcus phage 71] Length = 190 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KR++ R GM+ +LG +G T VQ+YE G + + ++ I+ L ++ Sbjct: 91 KRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAYLMG 150 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 ++ ++ ++ + Sbjct: 151 WVEENDDEVQHRAAHLEGELTDDE 174 >gi|152975865|ref|YP_001375382.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024617|gb|ABS22387.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 66 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + +G+ + + EKG I++ L++ I F FD Sbjct: 6 KIKEARARLHMTQEDLAKRVGVRRETISHLEKGKYNPSLQLAHDIAKTLQTTIDEIFIFD 65 >gi|332519788|ref|ZP_08396252.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044347|gb|EGI80541.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] Length = 258 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I+ R + +SQE L E L +T ++ YE+ + L S+ + PI Sbjct: 3 YISKNIKHLRNLKKLSQEGLAEELNVTRSRIGSYEENRSSPTIEFLIAFSDYFKIPIDIL 62 Query: 74 FDVSPTVCSDIS 85 T D S Sbjct: 63 LRNDLTKAKDFS 74 >gi|319893529|ref|YP_004150404.1| DNA-binding protein [Staphylococcus pseudintermedius HKU10-03] gi|317163225|gb|ADV06768.1| DNA-binding protein [Staphylococcus pseudintermedius HKU10-03] Length = 182 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V + ++ R +S +K+ + GI+ + + EKGV + L I+ L P+ Sbjct: 4 INTVVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLRIPL 63 Query: 71 SFFFDVSPTVCSDISSEE 88 + I + Sbjct: 64 TSLISEENEAIQKIDRSD 81 >gi|306833460|ref|ZP_07466587.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424230|gb|EFM27369.1| transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 226 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G++++ R G SQ ++ + L I+ +E G + L +S +L ++F Sbjct: 4 GEKLKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSRLLGVEETYF 61 >gi|270289916|ref|ZP_06196142.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|270281453|gb|EFA27285.1| transcriptional regulator [Pediococcus acidilactici 7_4] Length = 69 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I RR L +SQ ++ + G+T Q + E S ++ +L + + F Sbjct: 5 ITRRRKHLKLSQAEVAQLAGVTRQTINAIENNKYDPSLSLAFELAHILNTTVDQLF 60 >gi|257868622|ref|ZP_05648275.1| DNA binding protein [Enterococcus gallinarum EG2] gi|257802786|gb|EEV31608.1| DNA binding protein [Enterococcus gallinarum EG2] Length = 172 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++L R G+SQ + E L I+ Q + K+E G L +S++ + I Sbjct: 5 EQLKLYREKSGLSQASVAEELKISRQSISKWENGRGYPDIDNLVLLSKLYQVSIDELLQE 64 Query: 77 SPTVCSDISSEENNVMD 93 + + I + D Sbjct: 65 NEQLKEQIQKNNVEIED 81 >gi|300770302|ref|ZP_07080181.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762778|gb|EFK59595.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 220 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 29/124 (23%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R + G+SQ+ E +T + YE+ I+ P+S Sbjct: 3 NIGYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF---IQIDDVK--------VRQKIIEL 122 D +S + L N YF I K R+++ L Sbjct: 63 IDKK-----------------LSVNEILNFNDYFEANTSIAPPKNLAGIPFLSRERVF-L 104 Query: 123 VRSI 126 + + Sbjct: 105 AKEL 108 >gi|257062841|ref|YP_003142513.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790494|gb|ACV21164.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 369 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I++G I R ++Q+ L LG+T V K+E G + L I+ + I Sbjct: 5 ISIGTTIYRLRKEARLTQDGLAMHLGVTKASVSKWENGQSYPDIELLPKIAAYFDITID 63 >gi|26991944|ref|NP_747369.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24987072|gb|AAN70833.1|AE016728_2 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313501243|gb|ADR62609.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 182 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + P+S Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLS--GIPMSM 58 Query: 73 --FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ P + I + + ++D ++L Sbjct: 59 VEFFSVELEPQSPTQIVYKAHELIDISDGAVTMKLV 94 >gi|15895220|ref|NP_348569.1| phage related transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024927|gb|AAK79909.1|AE007699_19 Phage related transcriptional regulator (Xre family) [Clostridium acetobutylicum ATCC 824] gi|325509365|gb|ADZ21001.1| Phage related transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 123 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R G++Q +L G++ + K E+G LQ +S + Sbjct: 2 LGENLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTGSIETLQTLSNYFNVTVD--- 58 Query: 75 DVSPTVCSDISSEENNVMDFI 95 ++S ++I +E V + + Sbjct: 59 ELSENKSANIDKKEYAVDELL 79 >gi|317490340|ref|ZP_07948825.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA] gi|325833363|ref|ZP_08165812.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1] gi|316910554|gb|EFV32178.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA] gi|325485287|gb|EGC87756.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1] Length = 394 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R G++QE L E L ++ Q V K++ G N +L + ++ + + S V Sbjct: 9 YLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDDLMRGSVHV 68 Query: 81 CSDISSE 87 + +E Sbjct: 69 VKENDTE 75 >gi|317470678|ref|ZP_07930063.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp. 3_2_56FAA] gi|316901813|gb|EFV23742.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp. 3_2_56FAA] Length = 191 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + K+I+ R+ +SQ++L E + +T Q + +E G N L +S + + Sbjct: 1 MEFSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDT 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMREQIKAED 77 >gi|310778575|ref|YP_003966908.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309747898|gb|ADO82560.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 190 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK ++ R +S ++ G++ + + E+G + S L I+ L+ P S F Sbjct: 8 IGKNLKEIRKKQNLSLDETSRLTGVSKPMLGQIERGQSNPTVSTLWKIATGLKVPFSEFM 67 >gi|228474268|ref|ZP_04059003.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|314936712|ref|ZP_07844059.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] gi|228271627|gb|EEK12974.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|313655331|gb|EFS19076.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] Length = 179 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R ++QE+L E ++ + + E I EVL + S Sbjct: 1 MQIGYKLKNLRRQKNLTQEELAERTDLSKGYISQIESEYASPSMETFLSILEVLGTTPSD 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|257792471|ref|YP_003183077.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476368|gb|ACV56688.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 395 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R G++QE L E L ++ Q V K++ G N +L + ++ + + S V Sbjct: 9 YLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDDLMRGSVHV 68 Query: 81 CSDISSE 87 + +E Sbjct: 69 VKENDTE 75 >gi|261856939|ref|YP_003264222.1| XRE family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261837408|gb|ACX97175.1| transcriptional regulator, XRE family [Halothiobacillus neapolitanus c2] Length = 184 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 10/103 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--- 71 VG R+RL R+ +SQ L + G+ + E G S L+ I P++ Sbjct: 5 VGFRLRLVRLRHQLSQRALAKRTGVAHATISLIESGRTSPSVSALKRILA--GIPMTLGE 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 FF D P S+I + + IS +G+ + QI + Sbjct: 63 FFSDELPPAESEIFYRAGELTE-ISGGEGI----SYRQIGSAR 100 >gi|218463407|ref|ZP_03503498.1| MerR family transcriptional regulator [Rhizobium etli Kim 5] gi|218663344|ref|ZP_03519274.1| MerR family transcriptional regulator [Rhizobium etli IE4771] Length = 182 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 1 MSVDIGSRLRHLRLAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 59 GLAEFFAFEPERPKKAFYAAEELVEI 84 >gi|210624072|ref|ZP_03294172.1| hypothetical protein CLOHIR_02124 [Clostridium hiranonis DSM 13275] gi|210153205|gb|EEA84211.1| hypothetical protein CLOHIR_02124 [Clostridium hiranonis DSM 13275] Length = 189 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R ++ ++L + G++ + + E+ + S L+ IS+ L+ P Sbjct: 2 LGERIRNFRKNKSITLQQLSDETGLSIGYISQIERNLVDPSLSSLRKISKSLDIPTYLLM 61 Query: 75 DVSPTVCSDISSEENNVM 92 + D++++ +V+ Sbjct: 62 ETEK-YSDDLTTKSGDVI 78 >gi|163942236|ref|YP_001647120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013704|ref|ZP_04170833.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] gi|229135335|ref|ZP_04264127.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|163864433|gb|ABY45492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228648124|gb|EEL04167.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|228747626|gb|EEL97500.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] Length = 190 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L + G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPIS 71 I++ L P+S Sbjct: 61 WKITKGLSIPLS 72 >gi|322390117|ref|ZP_08063652.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321143244|gb|EFX38687.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 77 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 2 VGNKKIPNPVDINVGK--RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + NK I + +V K ++++ R+ M+Q L + +G+T Q + E G S Sbjct: 1 MYNKAIKTRKENHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLC 60 Query: 60 QHISEVLESPISFFF 74 I + L+ + F Sbjct: 61 LAICKTLDKTLDQLF 75 >gi|307327218|ref|ZP_07606406.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306887109|gb|EFN18107.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 200 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 15/127 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + R R R G S + + +GI+ + K E + L ++ L P+ Sbjct: 12 LERIIAVRAREYRQAAGASVGGMAQRVGISKAMLSKIENAQTACSLTTLSRLARGLGVPV 71 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + F + F+ G ++ R +I L+ ++ S Sbjct: 72 TALFRGMDDEREAV---------FVPAGHGARIVRRGTRIGHE------YALLGALRGSN 116 Query: 131 KKYRTIE 137 K+ +E Sbjct: 117 KRMEALE 123 >gi|307277180|ref|ZP_07558284.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506110|gb|EFM75276.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 71 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 5 SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 62 >gi|304404381|ref|ZP_07386042.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346188|gb|EFM12021.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 109 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 11/118 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+R R+ +SQE++ + +GIT YE + L +S E + + Sbjct: 3 MTMGDRLRELRLRKNLSQEEVAKQIGITRSAYSHYEINNRQPVYDTLIKLSSYFEVSLDY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + S E + +P+ +++ R +D K +Q I +++ I S+ Sbjct: 63 ------IIGGEFSKSEAGL-----SPETVEIFRLLNTMDQDKRKQSITKMMDVIRQSD 109 >gi|257879403|ref|ZP_05659056.1| predicted protein [Enterococcus faecium 1,230,933] gi|323142551|ref|ZP_08077367.1| toxin-antitoxin system, antitoxin component, Xre domain protein [Phascolarctobacterium sp. YIT 12067] gi|257813631|gb|EEV42389.1| predicted protein [Enterococcus faecium 1,230,933] gi|295100959|emb|CBK98504.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] gi|322412984|gb|EFY03887.1| toxin-antitoxin system, antitoxin component, Xre domain protein [Phascolarctobacterium sp. YIT 12067] Length = 130 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLE 67 D ++G+R++ R ++Q++LG +G + + ++ +YEK A ++EVL+ Sbjct: 7 DTSIGQRLKFVRRFRRLTQKELGLLMGYSEKTADVRIAQYEKNARTPNAETTAKLAEVLK 66 Query: 68 SPISFF 73 F Sbjct: 67 VSPVVF 72 >gi|228935113|ref|ZP_04097940.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824478|gb|EEM70283.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 145 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I R +SQ L + LG + ++ YE+G L+ I++ E + Sbjct: 2 LGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 >gi|229145898|ref|ZP_04274277.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296503830|ref|YP_003665530.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|228637506|gb|EEK93957.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296324882|gb|ADH07810.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 374 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 +P + + Sbjct: 64 LISYTPQMEQE 74 >gi|218281836|ref|ZP_03488175.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989] gi|218217125|gb|EEC90663.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989] Length = 104 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 17/115 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 6 VGQRIKAAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADTLL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 DV S +++E + +++ + + +Q+II VR++V Sbjct: 66 IDVVTHSVSGVTNELSEMIEKL----------------PKEKQQRIINAVRALVE 104 >gi|169627870|ref|YP_001701519.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239837|emb|CAM60865.1| Hypothetical transcriptional regulator [Mycobacterium abscessus] Length = 185 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G+S +L G+ + + E G L +++ L +P+S Sbjct: 11 VGARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPLSAAV 70 Query: 75 DVSPTVCS 82 VSP Sbjct: 71 GVSPPADG 78 >gi|163119252|ref|YP_077808.2| hypothetical protein BL02691 [Bacillus licheniformis ATCC 14580] gi|145902758|gb|AAU22170.2| hypothetical protein BL02691 [Bacillus licheniformis ATCC 14580] Length = 79 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ MSQ++L E +G++ Q + EKG I+E ++ F Sbjct: 9 ISNKVYEYRVLARMSQQELAEKVGVSKQTIFVMEKGNYVPTLLLAFRIAEFFNVDVNEIF 68 >gi|5852826|gb|AAD54225.1|AF143443_4 MesF [Leuconostoc mesenteroides] gi|30909074|gb|AAP37399.1| MesF [Leuconostoc mesenteroides subsp. mesenteroides] Length = 87 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G ++ R + +SQ KLG+ L + V YE G L IS++L+ I Sbjct: 26 IGPNLKKYRKLANISQFKLGQLLNVNQVTVSHYESGQRVPDIDSLIKISDILDVDI 81 >gi|86139426|ref|ZP_01057995.1| DNA binding protein, putative [Roseobacter sp. MED193] gi|85823929|gb|EAQ44135.1| DNA binding protein, putative [Roseobacter sp. MED193] Length = 188 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + P+ + + R++ R G+S E + G++ V + E+G + + L +++ Sbjct: 2 TENPDDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTR 61 Query: 65 VLESPISFFFDVSP 78 L+ + + Sbjct: 62 ALQVDFAGLLEAGD 75 >gi|323352770|ref|ZP_08087740.1| transcriptional repressor [Streptococcus sanguinis VMC66] gi|322121806|gb|EFX93552.1| transcriptional repressor [Streptococcus sanguinis VMC66] Length = 225 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDK 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|295693657|ref|YP_003602267.1| transcriptional regulator [Lactobacillus crispatus ST1] gi|295031763|emb|CBL51242.1| Transcriptional regulator [Lactobacillus crispatus ST1] Length = 65 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ M+QE L + + ++ Q + EKG + I +VL+ + F Sbjct: 5 KMKAARVGKDMTQEDLAQQVDVSRQTISAIEKGNYNPSVNLCIKICQVLDKTLDDLF 61 >gi|262282933|ref|ZP_06060700.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261185|gb|EEY79884.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 96 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N I + VG I+ R ++Q + +GI+ + +YE G + + + Sbjct: 1 MCYNGDIKSKERAMVGDNIKSLRKTNDLTQPEFARIVGISRNSLSRYENGTSPISTELID 60 Query: 61 HISEVLESP 69 I + Sbjct: 61 TICQKFNVS 69 >gi|237795609|ref|YP_002863161.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229263162|gb|ACQ54195.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 148 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q V K+E ++ + +S++ + Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQMVPELNKAKLLSQLYNVSYDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|228956421|ref|ZP_04118232.1| Transcription regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803254|gb|EEM50062.1| Transcription regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 114 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R +QE LG+ +G + + + YE + +S+ LE F Sbjct: 3 IGARIKKLRKQRNWTQEILGKKVGASSRVIGYYESEERFPSPDTIAKLSDTLEVTTDFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + ++ +M+ + T Sbjct: 63 GRGNELDIKKHTKFKEIMERLDT 85 >gi|268593047|ref|ZP_06127268.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311313|gb|EFE51766.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 79 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +G+++++ R+ + + L + QQV + E GVN++ + ++L I Sbjct: 7 ISIYIGRQLKVLRVNENYTLSEFARLLKKSEQQVYRMESGVNKMDIDTMVMYFKLLHVDI 66 Query: 71 SFFFD 75 FF+ Sbjct: 67 PSFFN 71 >gi|254516541|ref|ZP_05128600.1| transcriptional regulator, XRE family [gamma proteobacterium NOR5-3] gi|219674964|gb|EED31331.1| transcriptional regulator, XRE family [gamma proteobacterium NOR5-3] Length = 186 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G+R+ R + M+ E+L G++ + + E+ + Q I++ Sbjct: 1 MTDSTSRLLGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERCKANPTLAVTQRIAQTF 60 Query: 67 ESPISFFFDVSPTVCS-DISSEENNVMDFISTPD 99 I D S D+ ++ F + + Sbjct: 61 GISIGELVDDPNASASIDVVRGDDPGTVFRADSE 94 >gi|254475536|ref|ZP_05088922.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214029779|gb|EEB70614.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 131 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L LG+ + +E+ ++ A++L ++ +L + + Sbjct: 17 GDRVAAAREAAGMTQAQLARRLGVKKTTLTGWEQDLSEPRANKLTMMAGLLNVSMGWLLT 76 Query: 76 VSPTVCSDISSEE 88 + E+ Sbjct: 77 GEGEGMDAPAGEQ 89 >gi|160878433|ref|YP_001557401.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427099|gb|ABX40662.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 276 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 I +R I ++Q++L LG+T + V K+E+G++ S L +S++L Sbjct: 10 IADQRKIKKLTQKELAAKLGVTDKAVSKWERGLSCPDISLLSTLSDILGV 59 >gi|7523594|gb|AAF63096.1|AF158601_24 putative DNA binding protein [Streptococcus phage SFi18] Length = 166 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ L R +++ +L E +G+T + +E G + + S + ++E + + Sbjct: 2 NRLYLLRESRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSVPYL 58 >gi|15612908|ref|NP_241211.1| transcriptional regulator (phage-related) [Bacillus halodurans C-125] gi|10172958|dbj|BAB04064.1| transcriptional regulator (phage-related) [Bacillus halodurans C-125] Length = 116 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R ++Q+++ L IT YE+G N +L+ +++ I+F Sbjct: 7 RLRELRNAHNLTQQEVASFLNITESAYGFYEQGRNEPSIGKLKQLAQKYNVSIAFL 62 >gi|332292122|ref|YP_004430731.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170208|gb|AEE19463.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 115 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G I+ R +SQE+L + ++ V E G ++ + I+ VLE I+ Sbjct: 10 YLGGNIKNLRKSRKLSQEELASFISLSRSSVANIESGYHQPSIHVIYQIAVVLECKIT 67 >gi|313610053|gb|EFR85399.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 89 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+ +S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETSVS 58 >gi|302391440|ref|YP_003827260.1| XRE family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203517|gb|ADL12195.1| transcriptional regulator, XRE family [Acetohalobium arabaticum DSM 5501] Length = 131 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N +R++ R G++ EKL + + YE + ++E I + Sbjct: 1 MNFSQRLKQLRKEKGLTLEKLADEFDRSKTTFSNYENNHRKPDIDLTIELAEYFNVSIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + T + E V+ + +L + + I D K Q +++ V+ Sbjct: 61 L--LGNTEEKRTADEIKEVI-----SENQELFKLWEIISDRKDLQLLLQQVK 105 >gi|296134181|ref|YP_003641428.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296032759|gb|ADG83527.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 182 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +V RI+ R++ G S+E++ L I+ +YE G + + S + I+ + ++ Sbjct: 6 KDVANRIKGLRLLAGFSEEQMAAWLNISKDSYIRYENGEDDIPISIIYEIANIHGVDLT 64 >gi|295133194|ref|YP_003583870.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294981209|gb|ADF51674.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 152 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL Sbjct: 21 HIGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSEH-IEDEKLERVAKVLGVS 75 >gi|259501179|ref|ZP_05744081.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|302190374|ref|ZP_07266628.1| toxin-antitoxin system, antitoxin component, Xre family protein [Lactobacillus iners AB-1] gi|309804322|ref|ZP_07698398.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|309807442|ref|ZP_07701404.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|309809814|ref|ZP_07703666.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|312870953|ref|ZP_07731056.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312875431|ref|ZP_07735435.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315653780|ref|ZP_07906696.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] gi|325911542|ref|ZP_08173951.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|329920971|ref|ZP_08277503.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] gi|259167873|gb|EEW52368.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|308163534|gb|EFO65805.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|308169315|gb|EFO71371.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|308169856|gb|EFO71897.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|311089094|gb|EFQ47534.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|311093448|gb|EFQ51789.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|315488476|gb|EFU78122.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] gi|325476672|gb|EGC79829.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|328935406|gb|EGG31880.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] Length = 73 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +I R LG+SQ KL + +G+ + + YE I +VL I Sbjct: 4 LEVDNKICEYRKALGLSQHKLAKAVGLKRRSIMAYENKTISPTVETAYKICKVLGKDIKE 63 Query: 73 FF 74 F Sbjct: 64 VF 65 >gi|256832506|ref|YP_003161233.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] gi|256686037|gb|ACV08930.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] Length = 212 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+ +R RRM LG+SQ +L +G T Q + ++E+ N V + + L+ I Sbjct: 9 LGRLVRARRMELGLSQSELAARVGSTRQWLSRFEQATNDVSLTHALAVLHALDLSI 64 >gi|196035713|ref|ZP_03103116.1| DNA-binding protein [Bacillus cereus W] gi|228913383|ref|ZP_04077016.1| Transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925881|ref|ZP_04088965.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932124|ref|ZP_04095015.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|195991680|gb|EDX55645.1| DNA-binding protein [Bacillus cereus W] gi|228827552|gb|EEM73295.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833896|gb|EEM79449.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846292|gb|EEM91311.1| Transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 66 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q++L +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAAKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|134282471|ref|ZP_01769175.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167723927|ref|ZP_02407163.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|237508582|ref|ZP_04521297.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|134246028|gb|EBA46118.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|235000787|gb|EEP50211.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 94 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIA 64 >gi|150389675|ref|YP_001319724.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949537|gb|ABR48065.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 197 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I R ++Q+ + + LGI + V K+E G+ S +S + + I Sbjct: 4 VKIGKLIAKLRKEKKLTQKNIADALGIQNKTVSKWECGLGCPDLSLWPELSAIFDIDIKQ 63 Query: 73 FFDVSPTVCSDISSEENNV 91 + T + + Sbjct: 64 MMEGEITPNKPDGGNIDKI 82 >gi|332981863|ref|YP_004463304.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332699541|gb|AEE96482.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 132 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 54/124 (43%), Gaps = 4/124 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R +Q+ GIT + YE+G A L+ I+E+ + I + Sbjct: 5 LGDRLRRLREKKEWTQKYAATVFGITSGALSNYERGERTPDAEMLKRIAEIYDVSIDYLI 64 Query: 75 DVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 S E+++ D+I + + + + ++ D R+ +I ++ + + K Sbjct: 65 GKRSLRESSQYLNESSLDDYIEEIIGREAVLMLQSMDRL-DEHERELLIIFLQGLKARRK 123 Query: 132 KYRT 135 +++ Sbjct: 124 HFQS 127 >gi|296284051|ref|ZP_06862049.1| XRE family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 65 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R SQ +L L ++ Q V E G + IS V + PI F Sbjct: 3 NRLKVLRAERDWSQAELAGRLDVSRQAVNAIETGKHDPSLGLAFKISRVFDMPIETIF 60 >gi|259501794|ref|ZP_05744696.1| DNA-binding protein [Lactobacillus antri DSM 16041] gi|259170218|gb|EEW54713.1| DNA-binding protein [Lactobacillus antri DSM 16041] Length = 175 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I+ R +SQE+L E ++ + +Q+ E G + S L ++ L+ + F Sbjct: 2 VNNQIKQLRTARHLSQEQLAEKAKVSVRTIQRLEAG-DDASISTLNLVAGALDVQVGDLF 60 >gi|258423476|ref|ZP_05686367.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257846537|gb|EEV70560.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 173 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KR++ R GM+ +LG +G T VQ+YE G + + ++ I+ L ++ Sbjct: 74 KRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAYLMG 133 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 ++ ++ ++ + Sbjct: 134 WVEENDDEVQHRAAHLEGELTDDE 157 >gi|228915212|ref|ZP_04078807.1| transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844443|gb|EEM89499.1| transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 117 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 7/120 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ G++Q++L + +G++ V Y +G G LQ I+ L+ + Sbjct: 5 ERLKSLIEKKGITQQQLADVIGVSHVSVYNYVEGKKAPGTRTLQKIANYLKVTTDY---- 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + S + D T + ++ + + + + R+K +E + V+ EK + Sbjct: 61 --LLLLSDSPDLTAGQDLQLTKEAHEILQIINDLPEEQ-RKKALEQLEMFVNYEKSKGNM 117 >gi|227538776|ref|ZP_03968825.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241285|gb|EEI91300.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 220 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 29/124 (23%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R + G+SQ+ E +T + YE+ I+ P+S Sbjct: 3 NIGYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF---IQIDDVK--------VRQKIIEL 122 D +S + L N YF I K R+++ L Sbjct: 63 IDKK-----------------LSVNEILNFNDYFEANTSIAPPKNLAGIPFLSRERVF-L 104 Query: 123 VRSI 126 + + Sbjct: 105 AKEL 108 >gi|227505364|ref|ZP_03935413.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198066|gb|EEI78114.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length = 116 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVN---RVGASRLQHISEVLESPI 70 R+R R GMSQ+ L E G++ Q+ E K +N S L ++ LE P Sbjct: 17 SRLRETRERRGMSQKALAEISGVSRSQISNLERTDKALNLRADPQLSTLFKLAYALEVPP 76 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 S + V ++ + ++V F ++ Sbjct: 77 SLL--LPGGVGDEVVAALDDVAAFSAS 101 >gi|225569172|ref|ZP_03778197.1| hypothetical protein CLOHYLEM_05253 [Clostridium hylemonae DSM 15053] gi|225161971|gb|EEG74590.1| hypothetical protein CLOHYLEM_05253 [Clostridium hylemonae DSM 15053] Length = 79 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 5 KKIPNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV--NRVGASRLQ 60 + N D + G I R + G++Q +L E + I+ + E V L Sbjct: 2 RNNINHADDYIKLGLNIAYYRKLGGLTQLQLAEAVKISRTHLSNIEAPNMPTSVSLDTLF 61 Query: 61 HISEVLESPI 70 I++VL+ P+ Sbjct: 62 EIAKVLDIPV 71 >gi|210630507|ref|ZP_03296490.1| hypothetical protein COLSTE_00375 [Collinsella stercoris DSM 13279] gi|210160441|gb|EEA91412.1| hypothetical protein COLSTE_00375 [Collinsella stercoris DSM 13279] Length = 234 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 28/153 (18%) Query: 1 MVGNKKIPNP--VDIN--VG---KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 M G + +D + VG RIR R M+Q +L + ++ Q V +EKG Sbjct: 12 MDGGSDTIHATGLDAHTSVGPLASRIRGLRENASMTQGELASRVFVSRQTVINWEKGRTL 71 Query: 54 VGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDF------ISTPDGLQLN--- 104 A L+ +S VL + D E + + + + L Sbjct: 72 PDAESLKRLSSVLGITLDALLDERSEERLRQIEGERKIFKLAILFECLWSLEKLIGVIVV 131 Query: 105 ---------RYFIQIDDVKVRQKIIELVRSIVS 128 QI DV+ +II L S+ + Sbjct: 132 TIAHKFLDPSAAYQIADVE---RIIGLAISLAA 161 >gi|158423451|ref|YP_001524743.1| hypothetical protein AZC_1827 [Azorhizobium caulinodans ORS 571] gi|158330340|dbj|BAF87825.1| hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +GK I+ R +S L E G+ + + E+ + + +S+ L+ Sbjct: 43 HAITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDV 102 Query: 69 PI 70 + Sbjct: 103 TV 104 >gi|153812213|ref|ZP_01964881.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] gi|149831620|gb|EDM86707.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] Length = 112 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI RR LG+ Q ++ E G+ + + E+ ++ + ++ VL + F Sbjct: 12 IGKRIARRRKALGLKQSEVEEKAGLGQKYLSNIERSISIPSIEVIMKLAYVLNTTPDEFL 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + + + ++ +++ L L F Sbjct: 72 IGTLNSNDEEWKKSAELLRPLNSKQ-LNLVHNF 103 >gi|126464104|ref|YP_001045217.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332557508|ref|ZP_08411830.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|126105915|gb|ABN78445.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] gi|332275220|gb|EGJ20535.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 115 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++QE+L E +G + + + E G L+ + +E P+ + Sbjct: 4 RLKELRKAKNLTQEQLAEMVGSSKSYISEIESGKKFPSGRLLKAFAHTMEVPVQALIEDD 63 Query: 78 PTVCSDISSEE 88 ++ E Sbjct: 64 QAGTDLMAHLE 74 >gi|78188883|ref|YP_379221.1| XRE family transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78171082|gb|ABB28178.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii CaD3] Length = 108 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK I+ R ++QE+LG+ +G+ Q+ K E + + + + L++ I F Sbjct: 39 LGKMIKTARQERNLTQEQLGKLVGVQKSQISKLESNTHSATIDTILKVFKALKADIHF 96 >gi|330447297|ref|ZP_08310947.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491488|dbj|GAA05444.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 125 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKEAREWKGLTQVHMAQQLKVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 ---DVSPTVCSDISSEENNVMDFIS 96 + + S+ E + ++ F S Sbjct: 68 YGDEGIEILESEYKEEIDRLLQFFS 92 >gi|332653727|ref|ZP_08419471.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332516813|gb|EGJ46418.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 310 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 2/84 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ ++ R G++QE+L E L ++ Q V K+E + +L + + ++ + Sbjct: 1 MSFGENLQFYRAREGLTQEELAERLEVSRQSVSKWESNTSFPEMEKLMTLCSLFQTDLDT 60 Query: 73 FF--DVSPTVCSDISSEENNVMDF 94 D D + ++ F Sbjct: 61 LVRGDAQAACQEDAVGYDRHMNAF 84 >gi|294629300|ref|ZP_06707860.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292832633|gb|EFF90982.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 406 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLES 68 G+R+++ R G++Q +L + +GI+ ++K E G + G + I+E L Sbjct: 7 GQRVQILRERRGLTQAQLADFVGISPHTMRKIENGQQKAPGLDMVLRIAEALRV 60 >gi|255655392|ref|ZP_05400801.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|296451380|ref|ZP_06893118.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296880270|ref|ZP_06904235.1| probable phage regulatory protein [Clostridium difficile NAP07] gi|296259796|gb|EFH06653.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296428713|gb|EFH14595.1| probable phage regulatory protein [Clostridium difficile NAP07] Length = 132 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 19/130 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R ++Q KL + L F+ + KYE G + + I++ + Sbjct: 4 LGKRIAYLRNSKKLTQRKLMDIL--KFENLGKYETGDRKPNCDIVMSIADYFNVTTDWLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V S+ S +E + ++ I++ ++ I+ L R + +K Sbjct: 62 YGKEKVNSNNSVKE--------DKED------YLHINNDEM--TILNLYRQLNERDKIKI 105 Query: 135 T-IEEECMVE 143 I E + E Sbjct: 106 EGILELKISE 115 >gi|168210271|ref|ZP_02635896.1| cI2009 [Clostridium perfringens B str. ATCC 3626] gi|170711658|gb|EDT23840.1| cI2009 [Clostridium perfringens B str. ATCC 3626] Length = 78 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N+G I+ RR+I G S ++L + G+ + + E G+N+ + L +S I Sbjct: 15 NIGTNIKRRRLIKGWSLKQLSKKSGVGIKTINDIELGINKPSKNTLYKLSRGFGVTID 72 >gi|241113139|ref|YP_002972974.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861347|gb|ACS59013.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 182 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 1 MSVDIGNRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 59 GLAEFFAFEPERPRKAFYAAEELVEI 84 >gi|150398353|ref|YP_001328820.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029868|gb|ABR61985.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 182 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 16/108 (14%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSVDIGNRLRRVRLRHNLSQRELAKRAGVTNSTISLIESNSSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR---YFIQIDDV 113 FF P E F + + +++ + + QI D Sbjct: 59 GLAEFFSFEP---------EKPRKAFYAAEELVEIGKGPISYRQIGDN 97 >gi|52786374|ref|YP_092203.1| SinR [Bacillus licheniformis ATCC 14580] gi|319645045|ref|ZP_07999278.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] gi|52348876|gb|AAU41510.1| SinR [Bacillus licheniformis ATCC 14580] gi|317392854|gb|EFV73648.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] Length = 113 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 74 FDVSPTVCSDISSE---ENNVMDFIST 97 D D + EN V D +++ Sbjct: 64 LDEKDETEYDGQLDSEWENLVRDAMAS 90 >gi|41407155|ref|NP_959991.1| hypothetical protein MAP1057c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395506|gb|AAS03374.1| hypothetical protein MAP_1057c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 178 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R G++ E L G+T + K E+G + + ++ L+ + F Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDE 63 >gi|49482914|ref|YP_040138.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|258422580|ref|ZP_05685487.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282903282|ref|ZP_06311173.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|282905066|ref|ZP_06312924.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908042|ref|ZP_06315873.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282921517|ref|ZP_06329235.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|283957486|ref|ZP_06374939.1| DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295427234|ref|ZP_06819869.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590417|ref|ZP_06949056.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|49241043|emb|CAG39718.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257847232|gb|EEV71239.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|270055331|gb|ACZ58824.1| hypothetical protein SAP033A_008 [Staphylococcus aureus] gi|270300061|gb|ACZ68867.1| hypothetical protein SAP076A_042 [Staphylococcus aureus] gi|270300067|gb|ACZ68873.1| hypothetical protein SAP077A_006 [Staphylococcus aureus] gi|270300132|gb|ACZ68938.1| hypothetical protein SAP078A_013 [Staphylococcus aureus] gi|270300177|gb|ACZ68983.1| hypothetical protein SAP054A_013 [Staphylococcus aureus] gi|270300380|gb|ACZ69186.1| hypothetical protein SAP067A_013 [Staphylococcus aureus] gi|270300493|gb|ACZ69299.1| hypothetical protein SAP075A_013 [Staphylococcus aureus] gi|281334480|gb|ADA61564.1| hypothetical protein SAP019A_018 [Staphylococcus aureus] gi|282166762|gb|ADA80778.1| hypothetical protein SAP102A_031 [Staphylococcus aureus] gi|282315932|gb|EFB46316.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282327707|gb|EFB57989.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331891|gb|EFB61402.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596237|gb|EFC01198.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|283790937|gb|EFC29752.1| DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295128622|gb|EFG58253.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576716|gb|EFH95431.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|315192996|gb|EFU23400.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 113 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ +R + SQE+L L ++ Q V K+E N L +S++ + Sbjct: 7 IKEQRELKRWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLIKGD 65 >gi|125973071|ref|YP_001036981.1| transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004574|ref|ZP_05429552.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417266|ref|ZP_06248286.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713296|gb|ABN51788.1| transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|255991446|gb|EEU01550.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408668|gb|EFB38926.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940708|gb|ADU74742.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum DSM 1313] Length = 183 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + KRI+ R I G+S E L LGI + +YE G + S L I+ +S Sbjct: 6 KQISKRIKELREISGISAETLARELGIDSKTYTEYESGNVDIPVSLLFKIAGRFNVELS 64 >gi|324328969|gb|ADY24229.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 69 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ LG+ +G + Q + E+G I+++ P+ F++ Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFEL 64 Query: 77 SPTVC 81 Sbjct: 65 VEGEE 69 >gi|325971877|ref|YP_004248068.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027115|gb|ADY13874.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 197 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G++QE+LGE + ++ + K+E G LQ ++ + + D Sbjct: 5 EKLKAYRSSYGLTQEQLGEKVFVSRVTISKWETGRGLPNLGSLQQLASLFGISV----DE 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 ++ + V + + L Sbjct: 61 LLGSNELVALAQTEVKNTVRQSHTLM 86 >gi|308229525|gb|ADO24176.1| C.AflIIIP [Anabaena flos-aquae CCAP 1403/13F] Length = 78 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R L +SQ++L E + + E+G + + +++ L+ FD Sbjct: 9 GIRVRYFRKSLKLSQDELAEKSDLHRTYIGAVERGERNISLMNIFRLADALQVTAKDLFD 68 Query: 76 VSPTVCSDI 84 + Sbjct: 69 NPIENGENT 77 >gi|293402420|ref|ZP_06646556.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304083|gb|EFE45336.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 72 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ RM L MSQE+L + +G T Q + E G +I L + F Sbjct: 5 KIKMARMELDMSQEELAKKVGATRQTIGLIEAGRYNPSIKLCINICIALHKHLDDLF 61 >gi|257453048|ref|ZP_05618347.1| phage-like protein [Fusobacterium sp. 3_1_5R] gi|317059586|ref|ZP_07924071.1| predicted protein [Fusobacterium sp. 3_1_5R] gi|313685262|gb|EFS22097.1| predicted protein [Fusobacterium sp. 3_1_5R] Length = 135 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G R++ +R L +SQE+L E +G + + K E+ + + S+++ +S+VL S Sbjct: 1 MTLGDRVKRKREELKLSQEELAEKMGYKSKTSIHKIEQNITDLPLSKVEELSKVLRVSTS 60 Query: 72 FFFDVSPTVCSDISSEENNVM 92 + I + Sbjct: 61 YLMGWEEEPKKPIDPIIDEYH 81 >gi|254000130|ref|YP_003052193.1| XRE family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313202093|ref|YP_004040751.1| XRE family transcriptional regulator [Methylovorus sp. MP688] gi|253986809|gb|ACT51666.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] gi|312441409|gb|ADQ85515.1| transcriptional regulator, XRE family [Methylovorus sp. MP688] Length = 215 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G IR R+ G++ + E I+ + K E G+ L+ I+ L +S Sbjct: 26 RHLGNVIRQIRLQHGLTIADISERASISRGMLSKIENGLVSTSLETLEQIANALGVTLSR 85 Query: 73 FF 74 F Sbjct: 86 LF 87 >gi|189353554|ref|YP_001949181.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189337576|dbj|BAG46645.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 185 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ +L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 14 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 79 T 79 Sbjct: 74 P 74 >gi|15671987|ref|NP_266161.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490504|ref|YP_003352484.1| transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722841|gb|AAK04103.1|AE006240_1 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374322|gb|ADA63855.1| Transcriptional regulator [Lactococcus lactis subsp. lactis KF147] Length = 185 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R+ ++QE++ + L + Q + ++E L ++E+ ES +S F Sbjct: 2 LGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALAELYESDLSAF 60 >gi|83746380|ref|ZP_00943432.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|207744667|ref|YP_002261059.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] gi|83726921|gb|EAP74047.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|206596074|emb|CAQ63001.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] Length = 209 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 31/89 (34%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ + +R+R R G + + L G++ + E+G A+ L ++ L + Sbjct: 16 VNERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLAAGLGVSL 75 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 + F S P+ Sbjct: 76 ASLFGGEREGVSAQPLMRRAQQTQWRDPE 104 >gi|317480761|ref|ZP_07939847.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] gi|316903102|gb|EFV24970.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] Length = 161 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G R+ + R M+QE+L G+ + K EKG V L ++ L Sbjct: 19 IGSRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYNVSIDILSKVTSALG 71 >gi|315924082|ref|ZP_07920308.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622484|gb|EFV02439.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 67 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R +SQ++L + +G++ Q + EKG I L + F Sbjct: 5 RMKAARAARDLSQQQLADLVGVSRQTISAVEKGNYNPTIKLCVAICRALGKTLDELF 61 >gi|313124538|ref|YP_004034797.1| transcriptional regulator (xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281101|gb|ADQ61820.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 122 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 10/115 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK +R R GMSQ++L LG++ Q + +E G ++ I+ + + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVSRNSVL 65 Query: 75 DVSP-TVCSDISSEENNVMDFISTPDGLQLN-------RYFIQIDDVKVRQKIIE 121 P + E+ V+D T ++L R +I I + +R I E Sbjct: 66 AGLPVEMLVQEGQEDRRVVDL--TDHDIRLTYLGQQVPREYIDIIEKLMRCDIAE 118 >gi|291544455|emb|CBL17564.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 239 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I L+R +SQ++ LGI+ + YEKG+ G L I++ + +P Sbjct: 9 ITLQRKERKISQKQAASDLGISQALLSHYEKGIRECGLGFLVKIADYYNVSCDYLLGRTP 68 Query: 79 TVCSDISSEENNVM----DFISTPDGLQLNR 105 I + ++ + + +P+ + NR Sbjct: 69 EPEGKIITIDDIPDDDGNNVMPSPEVITFNR 99 >gi|260431708|ref|ZP_05785679.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter lacuscaerulensis ITI-1157] gi|260415536|gb|EEX08795.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter lacuscaerulensis ITI-1157] Length = 188 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S E + G++ V + E+G + S L +++ L+ + + Sbjct: 14 ARLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLLEE 73 Query: 77 SPTVCS 82 S T Sbjct: 74 SETTDQ 79 >gi|237733365|ref|ZP_04563846.1| predicted protein [Mollicutes bacterium D7] gi|229383577|gb|EEO33668.1| predicted protein [Coprobacillus sp. D7] Length = 79 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 36/79 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GKR+R R+ ++Q ++ GI + YE +L ++ + + + + Sbjct: 1 MNIGKRLRKLRIEHNLTQNEVSILTGIKRSSIASYELNEQLPPVDKLIQLANLYKVSLDY 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + + +E++ + Sbjct: 61 LCGLDNSEIRNTRNEKSKI 79 >gi|228943343|ref|ZP_04105795.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228816323|gb|EEM62496.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 157 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 17 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 75 >gi|167566021|ref|ZP_02358937.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis EO147] gi|167573100|ref|ZP_02365974.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis C6786] Length = 95 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 6/87 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRELREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLLP 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + E F ++P + Sbjct: 69 PASD------PSEPPPPGFGASPAAIA 89 >gi|167462393|ref|ZP_02327482.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R G++QE+L E L + V YE G + + L++++++ Sbjct: 7 KQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVSAD 66 Query: 72 FFFDVSPTVCSDISSEEN 89 + E+N Sbjct: 67 YLLGRGGNDEFVTPPEDN 84 Score = 41.3 bits (96), Expect = 0.045, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 4/97 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+L R M+Q++LG+ +G +Q+ YE + V L I EV F Sbjct: 92 IGWAIKLERQSQDMTQKELGKQVGENQRQISSYELDLKPVPEHTLDKIMEVFGLSFPEFL 151 Query: 75 DV----SPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 ++ + N + F + LN + Sbjct: 152 AKYNMWDESIHPHFDGDANKQIAFEKAQERDALNDSY 188 >gi|153812486|ref|ZP_01965154.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174] gi|149831411|gb|EDM86499.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174] Length = 70 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q+KLGE + ++ Q + E G I+++ I F+ Sbjct: 5 NRVKELREKEGLTQKKLGEKVNVSRQAINAIETGKYDPSLWLAYDIAQLFNMSIEEVFNF 64 Query: 77 SPTV 80 + Sbjct: 65 KESE 68 >gi|307273981|ref|ZP_07555191.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0855] gi|306509289|gb|EFM78349.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0855] Length = 71 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 5 SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKTLSEILSVPINELF 62 >gi|291447444|ref|ZP_06586834.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291350391|gb|EFE77295.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 386 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 7/95 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ L R + G+ + L + + V YE R + + + L SFF Sbjct: 14 GRRLTLARQLAGLRKNALAAQIDKSPTAVAAYESNSKRPAPATVAQLCLTLGVDPSFFLP 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR--YFI 108 + + ++V F S QL R F Sbjct: 74 GAQRPEAG-----SSVPHFRSLRSTSQLVRDQAFA 103 >gi|257875583|ref|ZP_05655236.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809749|gb|EEV38569.1| predicted protein [Enterococcus casseliflavus EC20] Length = 293 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + K+++ R ++Q++L L ++ + + K+E+G L ++++L +P+ Sbjct: 5 LSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPV 60 >gi|257865956|ref|ZP_05645609.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872289|ref|ZP_05651942.1| predicted protein [Enterococcus casseliflavus EC10] gi|257799890|gb|EEV28942.1| predicted protein [Enterococcus casseliflavus EC30] gi|257806453|gb|EEV35275.1| predicted protein [Enterococcus casseliflavus EC10] Length = 293 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + K+++ R ++Q++L L ++ + + K+E+G L ++++L +P+ Sbjct: 5 LSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPV 60 >gi|257440174|ref|ZP_05615929.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197526|gb|EEU95810.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 220 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 7/112 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G++Q +L + L +T + V ++E+GV + L+ +++ L ++ Sbjct: 7 GAFLARMRKSQGLTQAELAQQLHVTDKAVSRWERGVGLPDINTLEPLADALGLTLADLMH 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +DI+ E + DF + L R ID VR + L ++ Sbjct: 67 CRDPQEADIA-PEVPLEDFFT------LLRRQQSIDWRSVRAVLFWLSAALA 111 >gi|228988281|ref|ZP_04148376.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158633|ref|ZP_04286691.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342] gi|229169747|ref|ZP_04297447.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621] gi|229175726|ref|ZP_04303232.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3] gi|228607677|gb|EEK64993.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3] gi|228613786|gb|EEK70911.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621] gi|228624617|gb|EEK81386.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342] gi|228771453|gb|EEM19924.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 79 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+ + P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVE 65 Query: 72 FFFDVSPTVCSD 83 F + D Sbjct: 66 EIFTLVEGEEDD 77 >gi|119962079|ref|YP_946843.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119948938|gb|ABM07849.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 191 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ + + +G RIR R ++ E++ + G+T + + E+ + + L + +VL Sbjct: 8 PSNIPVAIGSRIRAARQAQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLS 67 Query: 68 SPISFFFDVSPT 79 + F T Sbjct: 68 VSVGDLFAAPET 79 >gi|50954710|ref|YP_061998.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951192|gb|AAT88893.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 184 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R+ G S L G++ + + E+G++ L+ ++ V + +S F Sbjct: 8 IGERLHQLRVERGRSVRALARETGVSATLLSQIERGLSDPSLRTLRALAGVFGTSVSTLF 67 Query: 75 DVSPTVCSDIS 85 D V + +S Sbjct: 68 DDLVPVVAQVS 78 >gi|148550378|ref|YP_001270480.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148514436|gb|ABQ81296.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 199 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 8/95 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPISF- 72 VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 20 VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLSGIPMSMV 76 Query: 73 -FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ P + I + + ++D ++L Sbjct: 77 EFFSVELEPQSPTQIVYKAHELIDISDGAVTMKLV 111 >gi|107025820|ref|YP_623331.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692996|ref|YP_838529.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895194|gb|ABF78358.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116650996|gb|ABK11636.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 185 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 79 T 79 Sbjct: 74 P 74 >gi|332882325|ref|ZP_08449953.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679709|gb|EGJ52678.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 77 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV--GASRLQHISE 64 + + VD+ V ++R +R LG+SQ L L + + + E + ++ I++ Sbjct: 1 MKSKVDLFVINKVREKRKELGISQRGLAAILECSPSFIGQVESDKFDIKYSVHQVFLIAQ 60 Query: 65 VLESPISFFF 74 + + FF Sbjct: 61 FFDCSPADFF 70 >gi|328948101|ref|YP_004365438.1| hypothetical protein Tresu_1233 [Treponema succinifaciens DSM 2489] gi|328448425|gb|AEB14141.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 114 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFF 73 +G IR R+ L M+QE+L E GIT + K E G ++ E+LE P F Sbjct: 11 LGANIRCYRIKLKMTQEELAEKAGITSVGISKIETGKTWPKKETIEKFLEILEVKPFQLF 70 Query: 74 FDVSPT 79 + Sbjct: 71 TETKED 76 >gi|325289439|ref|YP_004265620.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324964840|gb|ADY55619.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 65 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++++ R+ MSQE L +G+T Q + E G I + L ++ F Sbjct: 4 KKLKIARIECDMSQEDLANIVGVTRQTIGLIESGNYNPTLKLCIAICKALHKNLNDLFWE 63 Query: 77 SP 78 P Sbjct: 64 EP 65 >gi|322383375|ref|ZP_08057160.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152334|gb|EFX45155.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R G++QE+L E L + V YE G + + L++++++ Sbjct: 10 KQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVSAD 69 Query: 72 FFFDVSPTVCSDISSEEN 89 + E+N Sbjct: 70 YLLGRGGNDEFVTPPEDN 87 Score = 41.3 bits (96), Expect = 0.045, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 4/97 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+L R M+Q++LG+ +G +Q+ YE + V L I EV F Sbjct: 95 IGWAIKLERQSQDMTQKELGKQVGENQRQISSYELDLKPVPEHTLDKIMEVFGLSFPEFL 154 Query: 75 DV----SPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 ++ + N + F + LN + Sbjct: 155 AKYNMWDESIHPHFDGDANKQIAFEKAQERDALNDSY 191 >gi|296119241|ref|ZP_06837810.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] gi|295967762|gb|EFG81018.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] Length = 72 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 ++ R G+SQ+KL + LG++ Q + EKG ++ E I F Sbjct: 3 NNLKAFRDKAGLSQQKLADALGVSRQTIISIEKGRYDPSLPLAFQLAAKFECLIEDLFIP 62 Query: 76 VSPTVCSDIS 85 PT D Sbjct: 63 ELPTADEDGE 72 >gi|294500289|ref|YP_003563989.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350226|gb|ADE70555.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 66 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI+ R MSQ++L + G++ Q + E + ++ L + + F Sbjct: 2 VENRIKELRKSKRMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAAELGATVDELF 61 >gi|261820980|ref|YP_003259086.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604993|gb|ACX87479.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 104 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GKR+RL R+ G+ Q +LG G+ +V +YE+ V+ + + VL+ P Sbjct: 11 IGKRLRLARVNTGLKQVELGCLAGLDEETASSRVSQYEREVSSPDFGLVCRFAAVLDVPE 70 Query: 71 SFFFDVSPTVCS 82 ++F+ V + + Sbjct: 71 AYFYAVDEDLAT 82 >gi|238922270|ref|YP_002935784.1| hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] gi|238873942|gb|ACR73650.1| Hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] Length = 115 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 V RIR R ++Q +L LG+ + + YE+G + S L +S +L++ + + Sbjct: 4 VHNRIRELREEKHITQIRLSTELGVAQETISAYEQGRHMPSVSTLIKLSSILDASMDY 61 >gi|227878168|ref|ZP_03996142.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256850532|ref|ZP_05555959.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047426|ref|ZP_06020382.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|227862199|gb|EEJ69744.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256712737|gb|EEU27731.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260572196|gb|EEX28760.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] Length = 65 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ ++QE L + + ++ Q + EKG + I + L+ + F Sbjct: 5 KMKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSINLCIKICQALDKTLDDLF 61 >gi|221209564|ref|ZP_03582545.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221170252|gb|EEE02718.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 200 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ +L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 29 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 88 Query: 79 T 79 Sbjct: 89 P 89 >gi|167772763|ref|ZP_02444816.1| hypothetical protein ANACOL_04145 [Anaerotruncus colihominis DSM 17241] gi|167665241|gb|EDS09371.1| hypothetical protein ANACOL_04145 [Anaerotruncus colihominis DSM 17241] Length = 149 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R G+SQ++L E + +T Q V ++E G L+ +S++ + I+ Sbjct: 9 KLRTTNGLSQDQLAEKVHVTRQAVSRWETGETVPNTETLKLLSKLFDVSIN 59 >gi|110637230|ref|YP_677437.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279911|gb|ABG58097.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 79 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +G R+ R G SQ L Q ++K E G L I+ L + Sbjct: 14 VQKRIGLRVIELREHKGWSQSDLARACNKDRQAIEKIESGKVNPTIFSLYEIAIALGVSL 73 Query: 71 S 71 S Sbjct: 74 S 74 >gi|322616176|gb|EFY13092.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620883|gb|EFY17742.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623026|gb|EFY19868.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322634721|gb|EFY31452.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638712|gb|EFY35407.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322649122|gb|EFY45563.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654501|gb|EFY50823.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660780|gb|EFY57013.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665118|gb|EFY61306.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667862|gb|EFY64022.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671726|gb|EFY67847.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677228|gb|EFY73292.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680109|gb|EFY76148.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685462|gb|EFY81458.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193671|gb|EFZ78875.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199978|gb|EFZ85066.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204709|gb|EFZ89706.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205725|gb|EFZ90688.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323216770|gb|EGA01494.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223035|gb|EGA07379.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225164|gb|EGA09411.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231914|gb|EGA16021.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234441|gb|EGA18528.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237892|gb|EGA21951.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243507|gb|EGA27526.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249504|gb|EGA33418.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254252|gb|EGA38070.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255077|gb|EGA38863.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261261|gb|EGA44849.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266626|gb|EGA50113.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271352|gb|EGA54778.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 110 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 11/96 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R G+SQ LG +G ++ YEKG + L+ ++ L P+++ Sbjct: 9 ERLKEARCRAGLSQRSLGLLVGFDPASASSRMNHYEKGRHVPDIDTLRRMAAELNVPLNY 68 Query: 73 FF-------DVSPTVCSDISSEENNVMDFISTPDGL 101 FF +++ + E +N+++ + T G+ Sbjct: 69 FFCDDQTTAELALLISRMTEEERSNLIEALKTSSGV 104 >gi|317492341|ref|ZP_07950770.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919680|gb|EFV41010.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 186 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +++G+ +R R G S +K + G++ + + E+G + L IS L+ Sbjct: 3 DLSLHIGQTLRDLRQQRGWSLDKTAQATGVSKAMLGQIERGESSPTVVTLWRISSGLQ-- 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + F + P +D + D T L Sbjct: 61 -ASFSEFLPKQLTDAEPASLHHEDEAITAQTL 91 >gi|315648648|ref|ZP_07901744.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275850|gb|EFU39201.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 189 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+ ++ R G+S + + E G++ + + E+G + S L I L Sbjct: 3 PIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGIS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 F + ++++ + ++ +G Sbjct: 63 ---FTTLIEETETEVTVVSPDDLEPFHEAEG 90 >gi|291544357|emb|CBL17466.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 112 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R + M+QE+L E ++ + E+G L I+++L + Sbjct: 10 IGDRIRRYRELSRMTQEQLSELCSLSTGYIGHLERGTRSPSLETLAKIAQLLRVSLDDL 68 >gi|312109227|ref|YP_003987543.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|311214328|gb|ADP72932.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 72 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE+L + LGI+ + + E+G +Q I+E L + Sbjct: 7 GRRIRAFRKLKGYTQERLAKELGISVSILGEIERGNRLPTEELVQQIAERLNISV 61 >gi|228905139|ref|ZP_04069146.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] gi|228854461|gb|EEM99112.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] Length = 145 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I R +SQ L + LG + ++ YE+G L+ I++ E + Sbjct: 2 LGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 >gi|227539972|ref|ZP_03970021.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240250|gb|EEI90265.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 195 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +R G++Q+KL E G+T + +Q+ EKG LQ I+E L+ I Sbjct: 9 NLSQKRSDKGLTQQKLAELAGLTTRTIQRIEKGEVIPQGYTLQRIAEALDISI 61 >gi|119503754|ref|ZP_01625836.1| transcriptional regulator, Cro/CI family protein [marine gamma proteobacterium HTCC2080] gi|119460262|gb|EAW41355.1| transcriptional regulator, Cro/CI family protein [marine gamma proteobacterium HTCC2080] Length = 66 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R +Q L L +T Q V EKG I+ V + PI F Sbjct: 3 NRLKVLRAEHDWTQADLAAQLNVTRQTVNAIEKGKYDPSLPLAFKIAGVFQMPIDHIF 60 >gi|150018309|ref|YP_001310563.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904774|gb|ABR35607.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 78 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R +G++QE+LG +G++ Q + E IS++ I F F Sbjct: 3 NKLKEFREAVGLTQEQLGALVGVSRQAINSIETEKYEPSIWLAYDISQIFHCAIEEVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EQSE 66 >gi|323356598|ref|YP_004222994.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323272969|dbj|BAJ73114.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 197 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R LG+S + L E G++F V + E+G+ LQ ++ L P++ Sbjct: 16 LGAAVRDARKRLGLSVQALSEKAGVSFGLVSQLERGLGNPSLQSLQRLAGALGIPVAQLL 75 Query: 75 DVS 77 D Sbjct: 76 DEP 78 >gi|319893630|ref|YP_004150505.1| Zn peptidase with DNA binding domain [Staphylococcus pseudintermedius HKU10-03] gi|317163326|gb|ADV06869.1| Zn peptidase with DNA binding domain [Staphylococcus pseudintermedius HKU10-03] Length = 395 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 38/77 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ RMI G S++ L + L ++ Q V +YE+ +++ +++ FFF Sbjct: 4 GENLKALRMIEGYSRKSLADVLQVSEQAVWQYEEQNMMPEINKIYTLAQKFNVKTKFFFS 63 Query: 76 VSPTVCSDISSEENNVM 92 + S + + +++ Sbjct: 64 PKQELFSITAVDTHSIA 80 >gi|315446756|ref|YP_004079635.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] gi|315265059|gb|ADU01801.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] Length = 83 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG IR R+ M+QE L G+T + E G + RL I++ L+ ++ Sbjct: 21 RLVGAMIRELRIARNMTQEALALRSGVTRNVLIDVEHGRRGLLYERLFDIADALDVNVA 79 >gi|308270112|emb|CBX26724.1| hypothetical protein N47_A07530 [uncultured Desulfobacterium sp.] Length = 510 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G I+ R MSQ+KL E + I+ +++Q +E +R L +SE P+ Sbjct: 20 LGHTIKEYRQWRKMSQQKLSESIQISVRELQNWEADRHRARIENLHDLSEFTGIPM 75 >gi|300692596|ref|YP_003753591.1| hypothetical protein RPSI07_2974 [Ralstonia solanacearum PSI07] gi|299079656|emb|CBJ52333.1| conserved hypothethical protein, DNA binding protein domain, putative regulator [Ralstonia solanacearum PSI07] Length = 75 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 27/55 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R RR+ LG+SQE L E G+ V E+ V +Q I++ L+ S Sbjct: 16 ANVRRRRLELGLSQEDLAEKAGVHRTYVGMLERAEKNVTIYNIQRIADALDVEPS 70 >gi|261823778|ref|YP_003261884.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607791|gb|ACX90277.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 188 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 9/140 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G ++ R G S + E G++ + + E+G + + L I+ L Sbjct: 1 MSDELTRRIGDTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIE-LVR 124 S F + PT+ + + + S + + R D K+R + LV Sbjct: 61 NVAFSTFIE--PTLADEGVTYRSGAGSTFS--ESVAGMRAVPLFPYDEKLR---FDMLVI 113 Query: 125 SIVSSEKKYRTIEEECMVEQ 144 + + + E ++E Sbjct: 114 ELAAGAGSTSSPHENGVIEH 133 >gi|291298169|ref|YP_003509447.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567389|gb|ADD40354.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 806 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 39/78 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R+ G+SQE+L + ++ + +++ E G ++ AS L+ ++E L + + Sbjct: 12 GRLLRAHRLQAGLSQERLAQKAALSPRTIRQIESGRSQPRASTLKLLAEALGLSEADWTA 71 Query: 76 VSPTVCSDISSEENNVMD 93 + T D V + Sbjct: 72 LLETALPDSQPSTPVVDE 89 >gi|229062186|ref|ZP_04199510.1| Transcriptional regulator, Xre [Bacillus cereus AH603] gi|228717169|gb|EEL68845.1| Transcriptional regulator, Xre [Bacillus cereus AH603] Length = 190 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L + G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPIS 71 I++ L P+S Sbjct: 61 WKITKGLSIPLS 72 >gi|228924686|ref|ZP_04087872.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229180805|ref|ZP_04308142.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|229191815|ref|ZP_04318789.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228591689|gb|EEK49534.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228602642|gb|EEK60126.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228834985|gb|EEM80438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 157 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 17 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 75 >gi|167746263|ref|ZP_02418390.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662] gi|167654256|gb|EDR98385.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662] Length = 191 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + K+I+ R+ +SQ++L E + +T Q + +E G N L +S + + Sbjct: 1 MEFSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDT 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMREQIKAED 77 >gi|196032329|ref|ZP_03099743.1| DNA-binding protein [Bacillus cereus W] gi|218904481|ref|YP_002452315.1| DNA-binding protein [Bacillus cereus AH820] gi|195995080|gb|EDX59034.1| DNA-binding protein [Bacillus cereus W] gi|218535775|gb|ACK88173.1| DNA-binding protein [Bacillus cereus AH820] Length = 67 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R+ L M+QE L + + + + + EKG I+ L S I F F+ Sbjct: 6 KIKEYRIKLNMTQEDLAKQVSVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 76 VS 77 Sbjct: 66 DE 67 >gi|164516364|emb|CAP48298.1| putative integron gene cassette protein [uncultured bacterium] Length = 101 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 40/87 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ I+ RR+ LG S + + LGIT Q V +E+ + L I+++L + Sbjct: 2 KDIGELIKARRLELGYSSATVAKHLGITAQAVSNWERQGKSPAKALLPKIADLLGIRVEE 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 + S ++ N +S P+ Sbjct: 62 LLGSTEVRLSIEETQLLNSFRSLSAPE 88 >gi|163732391|ref|ZP_02139837.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161394689|gb|EDQ19012.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 71 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ ++ R G SQE L G+ V E+GV L+ I+E L+ P + Sbjct: 7 VGRNLKKYRKQAGFSQEGLALECGLHRTYVSGVERGVRNPTVVVLERIAEALKVPAARLL 66 Query: 75 DVSPT 79 D S + Sbjct: 67 DDSES 71 >gi|153005820|ref|YP_001380145.1| hypothetical protein Anae109_2962 [Anaeromyxobacter sp. Fw109-5] gi|152029393|gb|ABS27161.1| protein of unknown function DUF955 [Anaeromyxobacter sp. Fw109-5] Length = 476 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 ++G ++R R G++Q L E LGI+ + E + A L ++++L+ Sbjct: 5 AHLGAKVRSLRRQRGLTQAHLAERLGISASYLNLIEHNRRSLSAPLLIKLADILD 59 >gi|148266749|ref|YP_001245692.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392790|ref|YP_001315465.1| hypothetical protein SaurJH1_0316 [Staphylococcus aureus subsp. aureus JH1] gi|258419674|ref|ZP_05682641.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258448642|ref|ZP_05696755.1| transcriptional regulator [Staphylococcus aureus A6224] gi|269203649|ref|YP_003282918.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282925315|ref|ZP_06332972.1| XRE family transcriptional regulator [Staphylococcus aureus A9765] gi|283771021|ref|ZP_06343912.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|284024165|ref|ZP_06378563.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|295407180|ref|ZP_06816981.1| XRE family transcriptional regulator [Staphylococcus aureus A8819] gi|297245933|ref|ZP_06929792.1| XRE family transcriptional regulator [Staphylococcus aureus A8796] gi|147739818|gb|ABQ48116.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149945242|gb|ABR51178.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257844259|gb|EEV68641.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257858273|gb|EEV81161.1| transcriptional regulator [Staphylococcus aureus A6224] gi|262075939|gb|ACY11912.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282592591|gb|EFB97601.1| XRE family transcriptional regulator [Staphylococcus aureus A9765] gi|283459615|gb|EFC06706.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|294968033|gb|EFG44061.1| XRE family transcriptional regulator [Staphylococcus aureus A8819] gi|297177097|gb|EFH36351.1| XRE family transcriptional regulator [Staphylococcus aureus A8796] gi|315130281|gb|EFT86268.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus CGS03] Length = 107 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 10/85 (11%), Positives = 33/85 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R ++ +G+ + +YE G ++ + I+ L+ + Sbjct: 7 IGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYLL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + +++ ++ ++ + Sbjct: 67 LKNRQTENEVQHRAAHLEGELTDDE 91 >gi|78063471|ref|YP_373379.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971356|gb|ABB12735.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 73 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G +R R SQE+L E G+ V + E+G I+ + IS Sbjct: 7 HFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSIS 64 >gi|326692276|ref|ZP_08229281.1| Cro/CI family transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 122 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 18/125 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++Q+ L + + + V KYE + L I++ L++ + + Sbjct: 6 NRIKELRTQKKLTQQGLADIINSSRGTVAKYEGDERNPSYAMLSLIADALDTTVDYLQGK 65 Query: 77 SPTV------CSDISSEENNV----MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + SD + +V + I + +G +L+ + I+ V+ + Sbjct: 66 TDNALKTSHNGSDDGDHKKHVDLADDELIMSFEGKELSEDYK--------NSILAFVKML 117 Query: 127 VSSEK 131 K Sbjct: 118 REERK 122 >gi|323488389|ref|ZP_08093636.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323397896|gb|EGA90695.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 67 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R G +QE+L E LG++ Q + E G + I+ + + I F Sbjct: 4 RIKELRTSFGYTQEQLSEKLGVSRQTIISIENGRYKPSLELAYKIATLFQLRIEDVF 60 >gi|320108135|ref|YP_004183725.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926656|gb|ADV83731.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 178 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +R R++ +SQ +L +G+ + K E G L+ ++ L+ IS Sbjct: 64 LQVASAVRDLRLVRNLSQRQLAGRMGVPRTYISKIENGKAMPTIGSLERLARALQVDISD 123 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + S + + P ++ ++ Q+ D R + VR + + Sbjct: 124 LLRDAK------SRHQGETAVLTADPFLAEIAQFVGQL-DPVQRSIFLNQVRELAA 172 >gi|319936560|ref|ZP_08010974.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] gi|319808358|gb|EFW04918.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] Length = 110 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ R G+SQ++L E L ++ Q V K+E + + +SE+ + Sbjct: 5 EKLLQLRKERGLSQQQLAEQLDVSRQSVSKWELNESIPDIQNIVAMSELFHVSTDYL 61 >gi|307566125|ref|ZP_07628583.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella amnii CRIS 21A-A] gi|307345313|gb|EFN90692.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella amnii CRIS 21A-A] Length = 101 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R+ ++QE+LGE +G+ Q+ + EKG + + + + + L Sbjct: 32 QIGEIIKKARIEQNLTQEELGERIGVKRAQISRLEKGYS-ISIPTMSRVFKALGVS 86 >gi|239943979|ref|ZP_04695916.1| hypothetical protein SrosN15_23471 [Streptomyces roseosporus NRRL 15998] gi|239990435|ref|ZP_04711099.1| hypothetical protein SrosN1_24213 [Streptomyces roseosporus NRRL 11379] Length = 392 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 7/95 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ L R + G+ + L + + V YE R + + + L SFF Sbjct: 20 GRRLTLARQLAGLRKNALAAQIDKSPTAVAAYESNSKRPAPATVAQLCLTLGVDPSFFLP 79 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR--YFI 108 + + ++V F S QL R F Sbjct: 80 GAQRPEAG-----SSVPHFRSLRSTSQLVRDQAFA 109 >gi|160883666|ref|ZP_02064669.1| hypothetical protein BACOVA_01638 [Bacteroides ovatus ATCC 8483] gi|293373412|ref|ZP_06619767.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|299147543|ref|ZP_07040607.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|156111079|gb|EDO12824.1| hypothetical protein BACOVA_01638 [Bacteroides ovatus ATCC 8483] gi|292631550|gb|EFF50173.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298514330|gb|EFI38215.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 157 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 14/140 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ IR R+ M+QE L E + ++ V KYEK + LQ + L P + Sbjct: 11 VHHGRNIRRTRIEKDMNQEGLSELVHLSQPAVSKYEKMKV-IDDEMLQRFARALNVPFDY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ------IDDVKVRQ-----KIIE 121 + E N V + + G ++ ++ I+D +V KI E Sbjct: 70 L-KTLEEDAQTVVFENNTVNNSEQSAGGANISMGIVKSDTEDSINDSRVNNFNPIDKITE 128 Query: 122 LVRSIVSS-EKKYRTIEEEC 140 L ++ ++KY +E Sbjct: 129 LYERLLKEKDEKYAALERRL 148 >gi|54026486|ref|YP_120728.1| hypothetical protein nfa45130 [Nocardia farcinica IFM 10152] gi|54017994|dbj|BAD59364.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 201 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 8/108 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R + +L GI+ + + E G R L ++ + Sbjct: 8 VGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHGVTLDELV 67 Query: 75 DVSPTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 D PT ++ ++ P G+Q + I R+ Sbjct: 68 DAPPTGDPRVHLRPVTRNGMTMLPLTRRPGGIQ---AYKLIIPPDTRR 112 >gi|163941382|ref|YP_001646266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863579|gb|ABY44638.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 142 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 2 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYL 60 >gi|117924665|ref|YP_865282.1| helix-turn-helix domain-containing protein [Magnetococcus sp. MC-1] gi|117608421|gb|ABK43876.1| helix-turn-helix domain protein [Magnetococcus sp. MC-1] Length = 352 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 16/107 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R++L R G+S L + ++ Q + KYE+G ++ +S+ L +S+ Sbjct: 4 ERLKLARKREGLSLRDLASRIDGTVSAQAIGKYERGEMMPSSTVSIALSKALGVSVSYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTP-------DGLQL--NRYFIQIDD 112 SDIS E+ ST +G L ++QI++ Sbjct: 64 -----SPSDISLEKVEFRKLASTKARERAMVEGAVLDHVDRYLQIEE 105 >gi|323487530|ref|ZP_08092823.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum WAL-14163] gi|323399131|gb|EGA91536.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum WAL-14163] Length = 375 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 38/92 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ ++I +R G++Q L +G++ V K+E G + + L ++ I Sbjct: 4 LNIARQIIRKRRERGITQAALAAHMGVSKASVSKWETGQSYPDITLLPGLASYFNMSIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + + E + + + + +L Sbjct: 64 LMGCSMQMTEEEIQELFSRLAREFSQENAELL 95 >gi|306833652|ref|ZP_07466779.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424422|gb|EFM27561.1| transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 168 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 12 IGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVS 66 >gi|302537873|ref|ZP_07290215.1| DNA-binding protein [Streptomyces sp. C] gi|302446768|gb|EFL18584.1| DNA-binding protein [Streptomyces sp. C] Length = 282 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R G+SQ +L + + + E G +R + +++ L+ P+ Sbjct: 26 VGALLRTWRERRGISQLELAGRADSSSRHISFIETGRSRPSEEMVLRLADRLDVPV 81 >gi|302869035|ref|YP_003837672.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504494|ref|YP_004083381.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302571894|gb|ADL48096.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315411113|gb|ADU09230.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 186 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 4/113 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P + +R R G+S +L GI + + E G L + L+ Sbjct: 5 PAPPLATIAAALRRERERAGLSLTELARRAGIAKSTLSQLESGSGNPSVETLWALGVALD 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 P S + + + + + L R+ + Sbjct: 65 VPFSRLVEPPTAAVRVVRAGQGPRIRSEHADFSATLLAA----GAPHARRDVY 113 >gi|270299969|gb|ACZ68775.1| hypothetical protein SAP073A_008 [Staphylococcus aureus] Length = 72 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ +R + G SQE+L L ++ Q V K+E N L +S++ + Sbjct: 7 IKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLIKGD 65 >gi|257877770|ref|ZP_05657423.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811936|gb|EEV40756.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 72 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R ++QE+L + L I+ +YE G + L +++ + + + +++ Sbjct: 4 RIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLDIPTQSLIKLADFYSTSVDYLLNLT 63 Query: 78 PTV 80 Sbjct: 64 DHQ 66 >gi|224541898|ref|ZP_03682437.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] gi|224525132|gb|EEF94237.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ Q++LGE +G++ + V +E +Q +++ + Sbjct: 6 GTNVKQLREKRGIDQKELGEIVGVSDKTVSSWEINRTEPKMGIVQQLADYFGVSTDYLIK 65 Query: 76 VSPTVCSDISSEENNVMDFISTP 98 + D + EN +D+ P Sbjct: 66 GN----HDDAIYENVNIDYTRVP 84 >gi|218132385|ref|ZP_03461189.1| hypothetical protein BACPEC_00244 [Bacteroides pectinophilus ATCC 43243] gi|217992723|gb|EEC58725.1| hypothetical protein BACPEC_00244 [Bacteroides pectinophilus ATCC 43243] Length = 121 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R + G++Q+++ + LGI V+K E+G + +E S I + Sbjct: 25 GKRLSELRKMKGLTQQQVADELGIDVDTVRKNEQGRRGLSIDTASMYAEYYHSTIDYITH 84 Query: 76 VSPTVCSDISSEENNVMDFISTP 98 + ++++ + + Sbjct: 85 GKESSNDEVTAMLAEYPEEVRNK 107 >gi|217960732|ref|YP_002339296.1| DNA-binding protein [Bacillus cereus AH187] gi|229139935|ref|ZP_04268500.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26] gi|217067257|gb|ACJ81507.1| DNA-binding protein [Bacillus cereus AH187] gi|228643600|gb|EEK99866.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26] Length = 374 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 +P + + Sbjct: 64 LISYTPQMEQE 74 >gi|89095877|ref|ZP_01168771.1| DNA-binding protein [Bacillus sp. NRRL B-14911] gi|89089623|gb|EAR68730.1| DNA-binding protein [Bacillus sp. NRRL B-14911] Length = 68 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +I + R M+Q++L + +G++ Q + EK I++ ++ PI FD Sbjct: 6 NKISVYRAEKKMTQQELADAVGVSRQTILSIEKNRYNPSLILAIKIAKAVDKPIMDVFD 64 >gi|85707731|ref|ZP_01038797.1| putative DNA binding protein [Erythrobacter sp. NAP1] gi|85689265|gb|EAQ29268.1| putative DNA binding protein [Erythrobacter sp. NAP1] Length = 68 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G SQ +L LG++ Q + E ++++ + F Sbjct: 3 NRLKYHREAEGWSQGELARRLGVSRQTINAVETDKYDPSLPLALRMAKLFGVSVPDLF 60 >gi|75764075|ref|ZP_00743675.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903022|ref|ZP_04067161.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|74488436|gb|EAO52052.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856615|gb|EEN01136.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 194 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ +R R +S E+L G++ + K E+G + + I++ L P+S Sbjct: 19 QVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRL 78 Query: 74 FDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 V V E V + F T + G++++R Sbjct: 79 MVVGEPVAVARCGEGFAVDEGQAWHLETMFRYTKETGMEMHRA 121 >gi|327466843|gb|EGF12361.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 131 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R++ GM++++L L IT Q V ++EK AS Q ++ + +FF Sbjct: 4 GDILKQLRLLYGMTRKELATKLDITEQAVWQFEKNETSPKASVKQKMTNLFGVRSDYFFQ 63 Query: 76 VSPTVCSDISS 86 ++ D++S Sbjct: 64 MNSISNFDMTS 74 >gi|323700205|ref|ZP_08112117.1| helix-turn-helix domain protein [Desulfovibrio sp. ND132] gi|323460137|gb|EGB16002.1| helix-turn-helix domain protein [Desulfovibrio desulfuricans ND132] Length = 294 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+R+R R+ ++ E + + GI+ + +YE G + L I+++L+ + Sbjct: 9 AHLGERLRAYRIGKNLTPENVAQRTGISRAAIYRYESG-QPIRVDVLGKIADLLQVSLES 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 V CS + + T + L Sbjct: 68 LLGVGVEYCSSALAFFERMRQLEETAEQL 96 >gi|322375562|ref|ZP_08050074.1| putative transcriptional repressor [Streptococcus sp. C300] gi|321279270|gb|EFX56311.1| putative transcriptional repressor [Streptococcus sp. C300] Length = 69 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ L ++Q L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|313900623|ref|ZP_07834116.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312954685|gb|EFR36360.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 367 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 7/104 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK++ R M+QE+L +G++ V K+E L ++ + + Sbjct: 4 IRLGKKLIALRRDANMTQEELAAYMGVSKSSVSKWETETTLPDILLLPQLATLFNVSVDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL-------QLNRYFIQ 109 P + + ++ + + D +L R + Sbjct: 64 LIGYEPQLSMEAVNKLYLQLSAEWSRDSANAYAHSEELIRKYYS 107 >gi|229099483|ref|ZP_04230412.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29] gi|228683979|gb|EEL37928.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29] Length = 79 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVPVE 65 Query: 72 FFF 74 F Sbjct: 66 EIF 68 >gi|255103138|ref|ZP_05332115.1| XRE family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255308330|ref|ZP_05352501.1| XRE family transcriptional regulator [Clostridium difficile ATCC 43255] Length = 121 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 7/119 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++Q++L LG+T + + YEK + +S+ + Sbjct: 2 IGYRIKELRKEKDITQKELATFLGLTPKMISFYEKEERFPPHDIILKLSDFFNVSTDYLL 61 Query: 75 DVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 D SE + + + + L+L ++K+ ++ + + E Sbjct: 62 GKVNVKNIDNLSELELIENLNFSDDIKEALKLISEL----SPSSQEKMFKIAKVFLEEE 116 >gi|157150600|ref|YP_001449787.1| DNA-binding protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075394|gb|ABV10077.1| DNA-binding protein [Streptococcus gordonii str. Challis substr. CH1] Length = 70 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ M+Q L + +G+T Q + E G S I + L + F Sbjct: 12 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 68 >gi|160934259|ref|ZP_02081646.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753] gi|156866932|gb|EDO60304.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753] Length = 162 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 + + + + R I SQE++ E +G++ Q V K+E G ++E+ + Sbjct: 11 ISRNLTVLRQIHKYSQEEVAEKIGVSRQAVAKWESGETAPDLINCDALAELYNVSVDDLI 70 Query: 74 -FDVSPTVCS 82 FD S Sbjct: 71 HFDQSKEKIE 80 >gi|323693104|ref|ZP_08107323.1| hypothetical protein HMPREF9475_02186 [Clostridium symbiosum WAL-14673] gi|323502858|gb|EGB18701.1| hypothetical protein HMPREF9475_02186 [Clostridium symbiosum WAL-14673] Length = 225 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 VG+RIR RR L +S +LG+ LG+ +Q+YE + + ++ L + Sbjct: 10 KQVGERIRERRTELKLSMPELGKRLGVNKSTIQRYEADGVDPKRTMIIDGLAHALLTTPE 69 Query: 72 FFFDVSPTVCSD 83 + +S + Sbjct: 70 WLTGLSEDKEYN 81 >gi|315221518|ref|ZP_07863438.1| conserved hypothetical protein [Streptococcus anginosus F0211] gi|315189352|gb|EFU23047.1| conserved hypothetical protein [Streptococcus anginosus F0211] Length = 66 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +I+ R +LG+SQE+LG+ LGI+ Q E G N S Sbjct: 3 NKIKGYRNMLGLSQEQLGKQLGISKQAYYNKESGKNSFSDS 43 >gi|312865953|ref|ZP_07726174.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098357|gb|EFQ56580.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 158 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G ++ R ++Q + +GI+ + +YE G + V L I + Sbjct: 2 IGDNLKALRKSHHLTQPEFAAMIGISRNSLSRYENGTSSVSTELLDRICQKFNVS 56 >gi|311279701|ref|YP_003941932.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748896|gb|ADO48648.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 180 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 33/82 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S +L E G++ + + E+ + + L I+ L P Sbjct: 3 IAQHLAVTLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPF 62 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 S F + + ++ ++ Sbjct: 63 SLFITPPESEAAAYDPQQQAMV 84 >gi|309811507|ref|ZP_07705289.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] gi|308434558|gb|EFP58408.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] Length = 512 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 3/129 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R + + +G++ + E G S L ++EVL+ P++ Sbjct: 43 IGRRLRHVRQGAERTLGDVAAAVGMSPSALSLIENGKREPRLSVLTSLAEVLDVPLADLL 102 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +P L L R ++ + + ++ + ++ S + + Sbjct: 103 ATAPPSRRAALEIRLERAQRAEQYSALGLPTVRVGPRLPTEAL-EALVGMHEALASMQSE 161 Query: 133 YRTIEEECM 141 E Sbjct: 162 RAATPEHAR 170 >gi|309803453|ref|ZP_07697547.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|309805571|ref|ZP_07699615.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|312870937|ref|ZP_07731042.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312872150|ref|ZP_07732223.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325913375|ref|ZP_08175742.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|308164462|gb|EFO66715.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|308165110|gb|EFO67349.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|311092234|gb|EFQ50605.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311093627|gb|EFQ51966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477301|gb|EGC80446.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 105 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R ++Q +L G + +E G + + ++ L FF Sbjct: 5 LGSVIKEIRKDKKITQSELARLTGFKQNTISNHENGKRSLDECDIYTYAKALNVSPQTFF 64 Query: 75 DVSPTVCSDISSEENNVMD 93 D DI S N + D Sbjct: 65 DKYTNQDKDILSIYNQLHD 83 >gi|260072652|gb|ACX30550.1| hypothetical protein SUP05_FGYC49P140033 [uncultured SUP05 cluster bacterium] Length = 131 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV---NRVGASRLQHISEVLESPISFF 73 RI+ R G SQ++L E +G++ + +YE + L +++VL+ + Sbjct: 7 RIKQSRQAKGFSQKQLAEEIGVSSSAISQYESTSYFHSEPSIKNLTKLTKVLDVSFEWL 65 >gi|226322725|ref|ZP_03798243.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] gi|225208886|gb|EEG91240.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] Length = 194 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+RIR R M+ LGE G++ + E+ L I E L+ I + Sbjct: 5 AHIGERIRECRKKKMMTIRVLGEYTGLSAGYLSMLEQNKTSPNVDSLARICEALDIDIQY 64 Query: 73 FFDVSPTVCSDISSEE 88 + + I EE Sbjct: 65 ALEGEMPGKTVIHREE 80 >gi|209546895|ref|YP_002278813.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538139|gb|ACI58073.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 182 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 1 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 59 GLAEFFAFEPERPRKAFYAAEELVEI 84 >gi|126699832|ref|YP_001088729.1| putative regulatory protein [Clostridium difficile 630] gi|254975815|ref|ZP_05272287.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255101355|ref|ZP_05330332.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255307231|ref|ZP_05351402.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|255314944|ref|ZP_05356527.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255517618|ref|ZP_05385294.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255650729|ref|ZP_05397631.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|260683815|ref|YP_003215100.1| putative regulatory protein [Clostridium difficile CD196] gi|260687475|ref|YP_003218609.1| putative regulatory protein [Clostridium difficile R20291] gi|306520644|ref|ZP_07406991.1| putative regulatory protein [Clostridium difficile QCD-32g58] gi|115251269|emb|CAJ69100.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209978|emb|CBA63987.1| putative regulatory protein [Clostridium difficile CD196] gi|260213492|emb|CBE05196.1| putative regulatory protein [Clostridium difficile R20291] Length = 105 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR++ R ++ ++ +G++ + + E G +L Sbjct: 3 YIGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVL 62 Query: 74 F-DVSPTVCSDISSEENNVMDFISTPD 99 D++ T + + ++ N + +++ + Sbjct: 63 IKDITSTGKTYLENDINEELKDLNSRE 89 >gi|66391801|ref|YP_238525.1| DNA binding protein [Streptococcus phage 2972] gi|168229317|ref|YP_001686838.1| orf44 [Streptococcus phage 858] gi|56718458|gb|AAW27964.1| DNA binding protein [Streptococcus phage 2972] gi|155241712|gb|ABT18032.1| orf44 [Streptococcus phage 858] Length = 170 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R ++ +L E +G+T + +E G + S + ++E I + Sbjct: 2 NRLKELRKQKKLTIVELAEKIGVTKLTILNWEHGTREIKGSNAKKLAEYFNVSIPYL 58 >gi|49482390|ref|YP_039614.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|221140693|ref|ZP_03565186.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424286|ref|ZP_05600715.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257426962|ref|ZP_05603364.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429600|ref|ZP_05605987.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257432247|ref|ZP_05608610.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257435206|ref|ZP_05611257.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282902738|ref|ZP_06310631.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|282907140|ref|ZP_06314988.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282907482|ref|ZP_06315324.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912385|ref|ZP_06320181.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282913004|ref|ZP_06320796.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282921420|ref|ZP_06329138.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282922631|ref|ZP_06330321.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|283959595|ref|ZP_06377036.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293498058|ref|ZP_06665912.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293511647|ref|ZP_06670341.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M809] gi|293550257|ref|ZP_06672929.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|295426693|ref|ZP_06819332.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589106|ref|ZP_06947747.1| transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|304380109|ref|ZP_07362829.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|49240519|emb|CAG39176.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257273304|gb|EEV05406.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257276593|gb|EEV08044.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257280081|gb|EEV10668.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257283126|gb|EEV13258.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257285802|gb|EEV15918.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|269939674|emb|CBI48042.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282314852|gb|EFB45238.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282315835|gb|EFB46219.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282323104|gb|EFB53423.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282324081|gb|EFB54397.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282328387|gb|EFB58658.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330039|gb|EFB59560.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282597197|gb|EFC02156.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|283789187|gb|EFC28014.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290919304|gb|EFD96380.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|291096989|gb|EFE27247.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291465605|gb|EFF08137.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M809] gi|295129145|gb|EFG58772.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577617|gb|EFH96330.1| transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|302750028|gb|ADL64205.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341090|gb|EFM07009.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436742|gb|ADQ75813.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315194604|gb|EFU24993.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 391 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE +++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEINKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|114567544|ref|YP_754698.1| hypothetical protein Swol_2033 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338479|gb|ABI69327.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 64 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R LG QE L CLG+T Q + E ++++L + + F Sbjct: 3 NNIKELRKALGYRQEDLAACLGVTRQTINAIENQKYNPTLELAMKLAKLLGTNVEELF 60 >gi|126442387|ref|YP_001062902.1| XRE family transcriptional regulator [Burkholderia pseudomallei 668] gi|126221878|gb|ABN85383.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 668] Length = 94 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHPGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIA 64 >gi|325265475|ref|ZP_08132198.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029333|gb|EGB90625.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 206 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R ++QE+L E L ++ V K+E G L+ IS++ E I Sbjct: 5 EKLQQLRKKKNLTQEQLAEQLYVSRTAVSKWESGRGYPNIESLKCISKLFEVTID 59 >gi|325970254|ref|YP_004246445.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025492|gb|ADY12251.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 95 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +R R + M+Q +LG LGI+ Q V E G+ + + + + + P F Sbjct: 37 GGNLRFYRRLAHMNQTELGSKLGISKQFVSNMENGIKPISRAMALKLGSLFDVPAGRF 94 >gi|323439707|gb|EGA97425.1| putative transcriptional regulator [Staphylococcus aureus O11] gi|323443280|gb|EGB00897.1| putative transcriptional regulator [Staphylococcus aureus O46] Length = 189 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|319651012|ref|ZP_08005147.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] gi|317397368|gb|EFV78071.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] Length = 149 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G SQE L E L ++ Q V K+E G N + +S++ I Sbjct: 15 GWSQEDLAEKLFVSRQSVSKWENGQNYPSIEIIIKLSDLFGVTID 59 >gi|302334320|gb|ADL24513.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus JKD6159] Length = 189 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|283471920|emb|CAQ51131.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ST398] Length = 189 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|282902623|ref|ZP_06310516.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|282918060|ref|ZP_06325810.1| hypothetical protein SATG_00962 [Staphylococcus aureus subsp. aureus D139] gi|282921282|ref|ZP_06329000.1| hypothetical protein SASG_01463 [Staphylococcus aureus subsp. aureus C427] gi|283767782|ref|ZP_06340697.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|282315697|gb|EFB46081.1| hypothetical protein SASG_01463 [Staphylococcus aureus subsp. aureus C427] gi|282318345|gb|EFB48705.1| hypothetical protein SATG_00962 [Staphylococcus aureus subsp. aureus D139] gi|282597082|gb|EFC02041.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|283461661|gb|EFC08745.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] Length = 189 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|254292729|ref|YP_003058752.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041260|gb|ACT58055.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 72 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I++ R +SQ L + L ++ Q + E G I+ + E PI F+ Sbjct: 5 IKVFRAHRKISQAALADLLDVSRQSINAIETGKYDPSLPLAFKIARLFEVPIEEIFE 61 >gi|253730391|ref|ZP_04864556.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733848|ref|ZP_04868013.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|253725871|gb|EES94600.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728151|gb|EES96880.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|329732444|gb|EGG68794.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 189 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|238917513|ref|YP_002931030.1| hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC 27750] gi|238872873|gb|ACR72583.1| Hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC 27750] Length = 107 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++G +++ R+ G++QE + + L +T + E G N + L + +E+ + Sbjct: 1 MDSDLGAKVKKLRIAHGLTQEDVAKALEVTPGYISNVENGRNLMTLRMLSYYAELTGVSL 60 Query: 71 SFF 73 + Sbjct: 61 DYL 63 >gi|268593024|ref|ZP_06127245.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291311288|gb|EFE51741.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 93 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK++R R+ + + GI + QQ+ +YE+G+N++ L L+ I FF Sbjct: 12 GKKLRELRLEQKYTAAEFARLAGIKSEQQLYRYERGMNKITIDTLIFALSCLQVDIPQFF 71 Query: 75 D 75 + Sbjct: 72 E 72 >gi|197103228|ref|YP_002128606.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] gi|196480504|gb|ACG80031.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] Length = 73 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R G+SQE L E +G+ V E G L H + L+ S Sbjct: 7 VGTNVRRYRGEAGLSQEGLAELMGVDRAYVSGLELGRRNPTILTLWHTAMALKIRPSELL 66 Query: 75 DVS 77 + Sbjct: 67 EFE 69 >gi|187932677|ref|YP_001886786.1| hypothetical protein CLL_A2598 [Clostridium botulinum B str. Eklund 17B] gi|187720830|gb|ACD22051.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 66 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R + ++QE+L E +G+ + + + E G IS V+E+PI F Sbjct: 7 NLKKYRQMKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAVDISRVVETPIEKLF 63 >gi|182435435|ref|YP_001823154.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463951|dbj|BAG18471.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 468 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R R GMSQ +L L I+ + + E + L ++E FF Sbjct: 7 GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDARPLTVPVLLRLTEAFGVDPGFF 64 >gi|163854504|ref|YP_001628802.1| putative DNA-binding protein [Bordetella petrii DSM 12804] gi|163258232|emb|CAP40531.1| putative DNA-binding protein [Bordetella petrii] Length = 136 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 G+R+R R+ G +Q++L G+T + YE G ++ L +++ L+ + Sbjct: 11 GQRVRGARLRFGWTQKELASVSGLTQSAIGNYESGQRTEPTSAALIKLAQALDVTPEWL 69 >gi|39995190|ref|NP_951141.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39981952|gb|AAR33414.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298504194|gb|ADI82917.1| helix-turn-helix transcriptional regulator with cupin domain [Geobacter sulfurreducens KN400] Length = 196 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R ++ ++L E G++ + + E + L IS+ L+ I +FF Sbjct: 13 LGAKIRKLRQDRRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHYFF 72 Query: 75 DVSPTV 80 + Sbjct: 73 EEEEDQ 78 >gi|82752284|ref|YP_418025.1| hypothetical protein SAB2582c [Staphylococcus aureus RF122] gi|82657815|emb|CAI82270.1| probable membrane protein [Staphylococcus aureus RF122] Length = 189 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|21284353|ref|NP_647441.1| hypothetical protein MW2624 [Staphylococcus aureus subsp. aureus MW2] gi|49487483|ref|YP_044704.1| hypothetical protein SAS2588 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651100|ref|YP_187518.1| transcriptional regulator, putative [Staphylococcus aureus subsp. aureus COL] gi|87161562|ref|YP_495274.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196661|ref|YP_501492.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222818|ref|YP_001333640.1| hypothetical protein NWMN_2606 [Staphylococcus aureus subsp. aureus str. Newman] gi|258451376|ref|ZP_05699407.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262050429|ref|ZP_06023259.1| hypothetical protein SAD30_1606 [Staphylococcus aureus D30] gi|262053275|ref|ZP_06025407.1| hypothetical protein SA930_0618 [Staphylococcus aureus 930918-3] gi|282920710|ref|ZP_06328429.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|284023029|ref|ZP_06377427.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294849819|ref|ZP_06790559.1| hypothetical protein SKAG_01908 [Staphylococcus aureus A9754] gi|297209460|ref|ZP_06925858.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911484|ref|ZP_07128933.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21205797|dbj|BAB96489.1| MW2624 [Staphylococcus aureus subsp. aureus MW2] gi|49245926|emb|CAG44407.1| putative membrane protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285286|gb|AAW37380.1| transcriptional regulator, putative [Staphylococcus aureus subsp. aureus COL] gi|87127536|gb|ABD22050.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87204219|gb|ABD32029.1| Helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375618|dbj|BAF68878.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|257860906|gb|EEV83723.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259158829|gb|EEW43941.1| hypothetical protein SA930_0618 [Staphylococcus aureus 930918-3] gi|259161476|gb|EEW46088.1| hypothetical protein SAD30_1606 [Staphylococcus aureus D30] gi|282594118|gb|EFB99106.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|294823367|gb|EFG39796.1| hypothetical protein SKAG_01908 [Staphylococcus aureus A9754] gi|296885921|gb|EFH24856.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887663|gb|EFK82859.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|315197909|gb|EFU28242.1| hypothetical protein CGSSa01_15080 [Staphylococcus aureus subsp. aureus CGS01] gi|320141409|gb|EFW33252.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144391|gb|EFW36156.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329731810|gb|EGG68170.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 189 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|116514765|ref|YP_813671.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116094080|gb|ABJ59233.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 119 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK +R R GMSQ++L LG++ Q + +E G + I+ + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60 >gi|15925695|ref|NP_373229.1| hypothetical protein SAV2705 [Staphylococcus aureus subsp. aureus Mu50] gi|15928290|ref|NP_375823.1| hypothetical protein SA2495 [Staphylococcus aureus subsp. aureus N315] gi|148269137|ref|YP_001248080.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150395219|ref|YP_001317894.1| hypothetical protein SaurJH1_2785 [Staphylococcus aureus subsp. aureus JH1] gi|156981020|ref|YP_001443279.1| hypothetical protein SAHV_2689 [Staphylococcus aureus subsp. aureus Mu3] gi|253316707|ref|ZP_04839920.1| hypothetical protein SauraC_11280 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007477|ref|ZP_05146078.2| hypothetical protein SauraM_13430 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793530|ref|ZP_05642509.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258411164|ref|ZP_05681443.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258420931|ref|ZP_05683865.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|258438571|ref|ZP_05689794.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258443973|ref|ZP_05692311.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446210|ref|ZP_05694370.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258449131|ref|ZP_05697237.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258454391|ref|ZP_05702359.1| transcriptional regulator [Staphylococcus aureus A5937] gi|269204343|ref|YP_003283612.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282894270|ref|ZP_06302500.1| hypothetical protein SGAG_01620 [Staphylococcus aureus A8117] gi|282927741|ref|ZP_06335355.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295406854|ref|ZP_06816658.1| hypothetical protein SMAG_02027 [Staphylococcus aureus A8819] gi|297245889|ref|ZP_06929751.1| hypothetical protein SLAG_01983 [Staphylococcus aureus A8796] gi|13702662|dbj|BAB43802.1| SA2495 [Staphylococcus aureus subsp. aureus N315] gi|14248480|dbj|BAB58867.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147742206|gb|ABQ50504.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149947671|gb|ABR53607.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|156723155|dbj|BAF79572.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257787502|gb|EEV25842.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840049|gb|EEV64514.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257843121|gb|EEV67536.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|257848130|gb|EEV72122.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850857|gb|EEV74801.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257855036|gb|EEV77979.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257857564|gb|EEV80459.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257863485|gb|EEV86245.1| transcriptional regulator [Staphylococcus aureus A5937] gi|262076633|gb|ACY12606.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282590501|gb|EFB95579.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282763315|gb|EFC03445.1| hypothetical protein SGAG_01620 [Staphylococcus aureus A8117] gi|285818368|gb|ADC38855.1| Transcriptional regulator [Staphylococcus aureus 04-02981] gi|294968319|gb|EFG44344.1| hypothetical protein SMAG_02027 [Staphylococcus aureus A8819] gi|297177254|gb|EFH36507.1| hypothetical protein SLAG_01983 [Staphylococcus aureus A8796] gi|312831044|emb|CBX35886.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129534|gb|EFT85526.1| hypothetical protein CGSSa03_11146 [Staphylococcus aureus subsp. aureus CGS03] gi|329725645|gb|EGG62124.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 189 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|313499638|gb|ADR61004.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 185 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R M+ ++L E G+ + K E V +L + L I+ F Sbjct: 2 GQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNVDIAQLFR 61 Query: 76 VSPTVCSDIS 85 S TV + + Sbjct: 62 ASGTVSAPVP 71 >gi|207722560|ref|YP_002252996.1| phage regulatory protein [Ralstonia solanacearum MolK2] gi|206587742|emb|CAQ18324.1| putative phage regulatory protein [Ralstonia solanacearum MolK2] Length = 136 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +G+R+ R G++Q++L E LGI Q + YE G R+ AS Sbjct: 28 KELGERVAEARKAHGLTQQQLAEALGIAQQTLAHYEVGRARLPAS 72 >gi|167759110|ref|ZP_02431237.1| hypothetical protein CLOSCI_01457 [Clostridium scindens ATCC 35704] gi|167663228|gb|EDS07358.1| hypothetical protein CLOSCI_01457 [Clostridium scindens ATCC 35704] Length = 126 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R LG++ EK G+ LGI V K EKG N + + ++ I + Sbjct: 5 ERVKEVRKTLGLTLEKFGDRLGIKKAAVSKIEKGENSLTDANIKSICREFSVDYMWLTTG 64 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + + + +D I + Sbjct: 65 EGEMFVETDDDFFERIDRIMAGE 87 >gi|153955322|ref|YP_001396087.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348180|gb|EDK34716.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 434 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++ L++ I + Sbjct: 6 LGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAFELKTSIEYLM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I + N+ + Sbjct: 65 ESEETQAEKICTYFENIAE 83 >gi|47570199|ref|ZP_00240853.1| cI-like repressor [Bacillus cereus G9241] gi|228983330|ref|ZP_04143544.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229153853|ref|ZP_04281984.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342] gi|47553143|gb|EAL11540.1| cI-like repressor [Bacillus cereus G9241] gi|228629657|gb|EEK86353.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342] gi|228776444|gb|EEM24796.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 67 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+RIR R + G +QE + LG++ + + E+G + +++ L+ I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKISID 62 >gi|30263299|ref|NP_845676.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528673|ref|YP_020022.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186148|ref|YP_029400.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|52142204|ref|YP_084624.1| transcriptional regulator [Bacillus cereus E33L] gi|65320628|ref|ZP_00393587.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|167632351|ref|ZP_02390678.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637490|ref|ZP_02395770.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170684933|ref|ZP_02876158.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170705136|ref|ZP_02895601.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650155|ref|ZP_02933156.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564790|ref|ZP_03017711.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813831|ref|YP_002813840.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602863|ref|YP_002867558.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685913|ref|ZP_05149772.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723316|ref|ZP_05185104.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254738383|ref|ZP_05196086.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742450|ref|ZP_05200135.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752699|ref|ZP_05204735.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761214|ref|ZP_05213238.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257933|gb|AAP27162.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503821|gb|AAT32497.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180075|gb|AAT55451.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|51975673|gb|AAU17223.1| transcriptional regulator [Bacillus cereus E33L] gi|167514997|gb|EDR90363.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532649|gb|EDR95285.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170129991|gb|EDS98853.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671193|gb|EDT21931.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084107|gb|EDT69166.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564107|gb|EDV18071.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227004328|gb|ACP14071.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229267271|gb|ACQ48908.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 67 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + + + + + EKG I+ L S I F F+ Sbjct: 6 KIKEYRTKLNMTQEDLAKQVSVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 76 VS 77 Sbjct: 66 DE 67 >gi|329312845|gb|AEB87258.1| Transcriptional regulator [Staphylococcus aureus subsp. aureus T0131] Length = 381 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE +++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEINKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|325066629|ref|ZP_08125302.1| transcriptional regulator [Actinomyces oris K20] Length = 62 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q +LG LG++ Q V EKG I+ E+ + F Sbjct: 5 VRGLREARGLTQAQLGAALGVSRQSVNSIEKGKYDPSLPLAIAIARYFETTVEEIF 60 >gi|285018010|ref|YP_003375721.1| hypothetical protein XALc_1223 [Xanthomonas albilineans GPE PC73] gi|283473228|emb|CBA15733.1| hypothetical protein XALc_1223 [Xanthomonas albilineans] Length = 125 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + +RIRL R G+SQ +L LG+ V +E G + L +S VLE I Sbjct: 68 IAERIRLARNDRGLSQTELSRLLGVNRATVGHWESGESFAPNLQHLHSLSLVLEVTID 125 >gi|270262620|ref|ZP_06190891.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043304|gb|EFA16397.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 462 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 22/128 (17%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K+ N ++ +G RIR+ R S L E G++ V K E+G + A L +S Sbjct: 275 NNKLDN-INQRIGARIRIEREARHWSLSDLAERAGVSRAMVHKIERGDSSPTAMLLARLS 333 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI---- 119 +S + T + E+ + P+ VR+ + Sbjct: 334 GAFGLSMSKLIARAETQEGRLLRREDQPV--WVDPE------------SGYVRRHVSPRS 379 Query: 120 ---IELVR 124 ++LVR Sbjct: 380 DIPLDLVR 387 >gi|253699290|ref|YP_003020479.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774140|gb|ACT16721.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 209 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R+ LG++Q++ LGI + E G R + L +S + D Sbjct: 11 GVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGINAQWLHD 70 Query: 76 VSPTV-CSDISSEENNV 91 S +++++++ V Sbjct: 71 GSGESFKNELAADQPKV 87 >gi|239623815|ref|ZP_04666846.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521846|gb|EEQ61712.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 186 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ VG+ IR R ++ + G++ + + EKG S L I+ + Sbjct: 5 INLEVGRNIRRLREAKKLTLDGAAAATGVSRSMLAQIEKGDVNPTISVLWKIANGYKVSF 64 Query: 71 SFFFDVS 77 + + Sbjct: 65 TSLVETG 71 >gi|197121330|ref|YP_002133281.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171179|gb|ACG72152.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 192 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R +S EKL + G++ + + E G + + L IS L P S Sbjct: 12 VGGNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSALI 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 T + E+ +S+ DG +R D+ + R + EL Sbjct: 72 TARSTGGLHVLRAEH--AKVLSSHDGSYSSRALFPFDEPR-RVEFYEL 116 >gi|121609687|ref|YP_997494.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554327|gb|ABM58476.1| transcriptional regulator [Verminephrobacter eiseniae EF01-2] Length = 178 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR+ R+ GMS L + G++ + + E+GV S L+ +S V ++ F Sbjct: 2 LGKRLHELRLTRGMSLRALAQAAGVSPTLLSQIERGVTEPSLSTLRALSAVFGESMAALF 61 >gi|91780911|ref|YP_556118.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia xenovorans LB400] gi|91693571|gb|ABE36768.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia xenovorans LB400] Length = 315 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 17/131 (12%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 17 ATRAERDPFLTAMGERVRLLRARRGMTRKTLATETGLSERHLANLESGVGNASVLVLRQI 76 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY-------FIQIDD 112 + L P++ V D ++ + + + D L R F Q Sbjct: 77 ASTLNCPLA-------EVIGDETTASAEWLLIRELLHGRDQAALQRARVALAEMFAQAPR 129 Query: 113 VKVRQKIIELV 123 R+ I L+ Sbjct: 130 DPHRKDRIALI 140 >gi|82749860|ref|YP_415601.1| transcriptional regulator [Staphylococcus aureus RF122] gi|82655391|emb|CAI79776.1| probable transcriptional regulator [Staphylococcus aureus RF122] Length = 391 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE +++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEINKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|311031695|ref|ZP_07709785.1| Predicted transcriptional regulator, xre family protein [Bacillus sp. m3-13] Length = 120 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G+ IR R M+ +L + + ++KYE G+ + IS VL+ P S Sbjct: 2 RNIGENIRFYRERAKMTAAELALKIRVGTGTIEKYEAGLQTPDMQTILKISTVLDVPASE 61 Query: 73 FFDVSPTVCSDISSEE 88 + + S E Sbjct: 62 LLESFTSKNSTGLDPE 77 >gi|289522774|ref|ZP_06439628.1| toxin-antitoxin system, antitoxin component, Xre family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504610|gb|EFD25774.1| toxin-antitoxin system, antitoxin component, Xre family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 137 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R G++Q +L +G++ +Q E L+ I+E L S Sbjct: 25 MSLGLKIKRIRQQRGLTQGELASIVGVSSGYIQALESNRRNGSLKILKKIAEALAVDTSE 84 Query: 73 FFDVSPTVCS 82 + + Sbjct: 85 LLEEMQEKAN 94 >gi|297560986|ref|YP_003679960.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845434|gb|ADH67454.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 194 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R G++ L E GI + + E G R G L +++ P+ Sbjct: 12 VGPRLRALRHRHGITLTALSETTGIAVSTLSRLESGQRRPGLELLLPLAKAYNVPLD 68 >gi|254486796|ref|ZP_05100001.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214043665|gb|EEB84303.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 132 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 6/112 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+ P G R+ R M+Q L + LG+ ++ +E ++ A+RL Sbjct: 1 MAENEDWYGPDVATFGDRVAAAREHAQMTQAALAKRLGVKQATLRAWEDDLSEPRANRLS 60 Query: 61 HISEVLESPISFFFDVS------PTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++ +L + + + P S +V+ + L R Sbjct: 61 MLAGILGVSMMWLINGEGEGLDAPDDGQSSSETAMDVLTELRDLRADMLKRA 112 >gi|297544917|ref|YP_003677219.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842692|gb|ADH61208.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 65 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R + ++QE+L LG+T + E G I+ + I F Sbjct: 3 NRLKVYRAMHDLTQEELATKLGVTRATINAIENGRYDPSLKLAFQIARFFKISIEDVF 60 >gi|257481782|ref|ZP_05635823.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 199 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 8/99 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESP 69 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P Sbjct: 16 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIP 72 Query: 70 ISF--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +S FF + P + + + + ++D ++L Sbjct: 73 MSMVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLV 111 >gi|254823297|ref|ZP_05228298.1| transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 174 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L + G+T + K E+ + + +++ L+ + F Sbjct: 5 LRAVRKQRGLTLEALAQQTGLTKSYLSKIERRRSTPSIAVALKVAKALDVDVGRLF---- 60 Query: 79 TVCSDISSEENNVMDFISTPDG 100 S+ ++ E ++ ++ +G Sbjct: 61 ---SEEAAHEKITVERAASAEG 79 >gi|228957650|ref|ZP_04119398.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802035|gb|EEM48904.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 107 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T ++ SE Sbjct: 62 LHDETTKEINLDSE 75 >gi|224148667|ref|XP_002336695.1| predicted protein [Populus trichocarpa] gi|222836536|gb|EEE74943.1| predicted protein [Populus trichocarpa] Length = 63 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 23/56 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R G SQ L + LG++ Q V E G I+ V E+ I F Sbjct: 5 IRELRAERGWSQAALADLLGVSRQTVNAIETGRYDPSLPLAFAIARVFETRIEAIF 60 >gi|149203444|ref|ZP_01880414.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143277|gb|EDM31316.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 465 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 55/142 (38%), Gaps = 25/142 (17%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R LG++Q+ LG++ + + E V + + +++ Sbjct: 6 LYAGAKLRETRQRLGLTQKDFAGKLGVSLPYLNQMENNNRPVSTTVVLALAQEFG----- 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP-----------------DGLQLNRYFIQIDDV-- 113 FDV+ D +++ + ++ P + L R F+++ Sbjct: 61 -FDVTELSTGDAERMVSDMREALADPVFGDDPPPLADLRLTASNAPALARAFLELHSAYR 119 Query: 114 KVRQKIIELVRSIVSSEKKYRT 135 + +++ L ++ + + ++ Sbjct: 120 QTHERLASLDEALGREDARNQS 141 >gi|148998521|ref|ZP_01825962.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|168576609|ref|ZP_02722475.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|307068599|ref|YP_003877565.1| transposase-like protein, IS1515 [Streptococcus pneumoniae AP200] gi|147755714|gb|EDK62760.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|183577671|gb|EDT98199.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|306410136|gb|ADM85563.1| Transposase-like protein, IS1515 [Streptococcus pneumoniae AP200] Length = 415 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|153816198|ref|ZP_01968866.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|317500518|ref|ZP_07958741.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089382|ref|ZP_08338281.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846533|gb|EDK23451.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|316898107|gb|EFV20155.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|330404750|gb|EGG84288.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] Length = 95 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ IR RM + Q L + L I+ Q + YE+G+ L I++ + Sbjct: 30 VGENIRRLRMRNQLKQADLAQKLNISRQSLSAYERGITLPDIYLLIEIADFFRISLD 86 >gi|116251937|ref|YP_767775.1| helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256585|emb|CAK07672.1| putative helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 108 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 17/118 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFFF 74 GKRI+ R GM+ + L G + + + E K R A +L I+ VLE + Sbjct: 7 GKRIKELRTKKGMTLDDLAGATGSSKSYIWELENKNPPRPSAEKLSEIAAVLEVTTDYL- 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + E F R + + R+KI + R + S K+ Sbjct: 66 -----IGRETTLETAEDKAFF---------REYSNMPQAT-REKIRAMARLLGSDAKE 108 >gi|293399884|ref|ZP_06644030.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306284|gb|EFE47527.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 168 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R G++QE+ E + ++ + V ++E G N L IS+ E + Sbjct: 6 IGEFLKELRKQKGLTQEQFAEIVNVSNRTVSRWENGNNLPDLDILIEISDYYEIDLRELL 65 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + E V+ ++ Sbjct: 66 NGEKKGEKMHKEVEETVLKAVA 87 >gi|237739262|ref|ZP_04569743.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229422870|gb|EEO37917.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 106 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K IR RR L ++QE+ + G++F ++++E + L I+ Sbjct: 19 NMKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFEN-TGEISLFSLIKIA 77 Query: 64 EVLES 68 VL Sbjct: 78 IVLGC 82 >gi|225571452|ref|ZP_03780448.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM 15053] gi|225159928|gb|EEG72547.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM 15053] Length = 377 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 27/79 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R GMSQE L + I+ + + E S I L + F Sbjct: 2 NRVKEIRKERGMSQETLARYIEISRKYLSMIECQNATPSISIAMRIGGALGVSVDKIFLD 61 Query: 77 SPTVCSDISSEENNVMDFI 95 +V + + +D Sbjct: 62 LSSVETIAYPKPIRYIDLF 80 >gi|218677789|ref|ZP_03525686.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 182 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 1 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 59 GLAEFFAFEPERPRKAFYAAEELVEI 84 >gi|167749863|ref|ZP_02421990.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702] gi|167657175|gb|EDS01305.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702] gi|291531021|emb|CBK96606.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 221 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + L R G++Q+++ LGI + YEKG G L ++ + SP Sbjct: 9 LSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRECGLEFLVKAADYYNVSTDYLLGRSP 68 Query: 79 TVCSDISSEEN 89 I +E + Sbjct: 69 VSNGGIITESD 79 >gi|152966423|ref|YP_001362207.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151360940|gb|ABS03943.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 109 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ R+ + R G+++ +L E +G+ Q + E+G ++ P+ Sbjct: 11 KHLHNRLAVLRAERGITRRQLAEAVGVNVQTIGFLERGDYGPSVELALRLAGHFGLPVEA 70 Query: 73 FFDVSP 78 F ++P Sbjct: 71 LFSLTP 76 >gi|325068074|ref|ZP_08126747.1| Cro/CI family transcriptional regulator putative [Actinomyces oris K20] Length = 146 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 23/63 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + I R +QE L +G++ Q + K+E S +++ + I Sbjct: 2 ISSNIAALRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCIRLAQAFDVAIDDLV 61 Query: 75 DVS 77 + Sbjct: 62 NGD 64 >gi|313633852|gb|EFS00575.1| putative transcriptional regulator [Listeria seeligeri FSL N1-067] Length = 167 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++VG RIR R M+Q++LG LG ++ +YE G L ++EVL Sbjct: 1 MSVGSRIRRVRKFRDMTQKELGIALGYDEKSADVRITQYETGTRTPKIDVLNAMAEVLNV 60 Query: 69 PI 70 + Sbjct: 61 NV 62 >gi|291530187|emb|CBK95772.1| transcriptional regulator, XRE family [Eubacterium siraeum 70/3] Length = 72 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 RIR R ++Q + + LG++ KYE G N V + L ++E ++ + + Sbjct: 3 SRIRNLREDSDLNQTTVAKMLGMSQTGYSKYETGENDVPTAILIKLAEYYKTNVDY 58 >gi|293399779|ref|ZP_06643925.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306179|gb|EFE47422.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 65 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R M+Q++L EC+G+T Q + EKG I + L+ ++ F Sbjct: 6 RIKAARAAKDMTQKELAECVGVTRQTMNAIEKGDYNSSIRLCIAICKALDKTLNDLF 62 >gi|225405316|ref|ZP_03760505.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme DSM 15981] gi|225043159|gb|EEG53405.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme DSM 15981] Length = 130 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G I R GM+Q +L E + +T + V K+E+ ++ L +++ +L I Sbjct: 1 MEKTLGMIIAEHRKEKGMTQLELAEKMRVTDKAVSKWERDLSCPDIHSLPNLAAILGISI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + V S VMD + L + Sbjct: 61 DDLMQIKREVPVS-SKNPKEVMDILFKAVALAM 92 >gi|225017295|ref|ZP_03706487.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum DSM 5476] gi|224949912|gb|EEG31121.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum DSM 5476] Length = 81 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVL 66 DI +GK IR R ++Q + L G T K E G+ + AS L I+E+L Sbjct: 8 DIPLGKNIRSIRKQKKLTQMDVVRELELAGLGTTRSSYAKIEAGIQHIYASELIAIAEIL 67 Query: 67 ESPISFFFDVSPT 79 + P++ F +PT Sbjct: 68 DVPLTELFRSNPT 80 >gi|163743903|ref|ZP_02151274.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161382844|gb|EDQ07242.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 188 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S E + G++ V + E+G + + L +++ L+ + D Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLDS 73 Query: 77 SPTVCS 82 + S Sbjct: 74 NEAQDS 79 >gi|75762636|ref|ZP_00742481.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895748|ref|YP_002444159.1| DNA-binding protein [Bacillus cereus G9842] gi|228899378|ref|ZP_04063640.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] gi|228963794|ref|ZP_04124935.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|74489883|gb|EAO53254.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542527|gb|ACK94921.1| DNA-binding protein [Bacillus cereus G9842] gi|228795939|gb|EEM43406.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228860284|gb|EEN04682.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] Length = 66 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNELF 61 >gi|89893443|ref|YP_516930.1| hypothetical protein DSY0697 [Desulfitobacterium hafniense Y51] gi|219666722|ref|YP_002457157.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332891|dbj|BAE82486.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536982|gb|ACL18721.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 71 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+R R ++Q+ L + L ++ +YE G + ++ L ++ ++ + + Sbjct: 4 QRLRDLREDRDLTQQDLADLLKVSQATYSRYESGALDIPSTSLIKLARFYKTSVDYL 60 >gi|327393585|dbj|BAK11007.1| putative transcriptional regulator [Pantoea ananatis AJ13355] Length = 194 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 30/64 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD ++ + + R ++ +L + G++ + K E+G + A+ L ++ + + Sbjct: 10 VDSDIARLLLKHRKARNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANAMNITL 69 Query: 71 SFFF 74 S F Sbjct: 70 SKLF 73 >gi|309804463|ref|ZP_07698530.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|312873160|ref|ZP_07733219.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|312873421|ref|ZP_07733472.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|325913317|ref|ZP_08175685.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|308166216|gb|EFO68432.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|311091105|gb|EFQ49498.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311091393|gb|EFQ49778.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325477420|gb|EGC80564.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 74 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +I R LG+SQ KL + +G+ + + YE I +VL I Sbjct: 4 LEVDNKICEYRKALGLSQHKLAKAVGLKRRSIMAYENKTISPTVETAYKICKVLGKDIKE 63 Query: 73 FF 74 F Sbjct: 64 VF 65 >gi|297539577|ref|YP_003675346.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297258924|gb|ADI30769.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 536 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 38/77 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G IR RR L ++ + L +G + + E+G + + L+ ++E L ++ Sbjct: 1 MSIGHSIRFRRKSLNITLQSLANQVGADAGNLSRIERGELGINENTLRKVAEALNCTPAY 60 Query: 73 FFDVSPTVCSDISSEEN 89 + S + +S +E+ Sbjct: 61 LYAQSDMPKTALSVQEH 77 >gi|293400017|ref|ZP_06644163.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306417|gb|EFE47660.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 183 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFDVS 77 ++ RR+ LG++ E++G +G++ VQ++E G + V ++ ++ L++ ++ Sbjct: 7 VKSRRVQLGLTMEQVGRKVGVSKATVQRWESGEICNVRRDKIAKLANALQTTPAYLMGWD 66 Query: 78 PTVCS 82 S Sbjct: 67 ENEIS 71 >gi|218132726|ref|ZP_03461530.1| hypothetical protein BACPEC_00587 [Bacteroides pectinophilus ATCC 43243] gi|217992452|gb|EEC58455.1| hypothetical protein BACPEC_00587 [Bacteroides pectinophilus ATCC 43243] Length = 123 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R ++Q +L L +T + + YE V+ + L +S++ + + + Sbjct: 11 NRIRELRQEKKITQLQLSSQLEVTQETISAYENNVHMPSLAALMKMSKIFNASMDYIM-G 69 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 V + EE + D + L + ++ + R +++ + +V +E++ Sbjct: 70 QSNVRNIPKEEEPSAADIVQRN---SLMTCYQKLGAMN-RARLLSYAQGLVDAERR 121 >gi|149185124|ref|ZP_01863441.1| transcriptional regulator, XRE family protein [Erythrobacter sp. SD-21] gi|148831235|gb|EDL49669.1| transcriptional regulator, XRE family protein [Erythrobacter sp. SD-21] Length = 67 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V R+++ R + SQ++L + L ++ Q V E G I++V E PI F Sbjct: 5 VKNRLKVLRAMRDWSQQELADRLEVSRQSVNAIETGRYDPSLPLAFKIADVFEMPIEDIF 64 Query: 75 D 75 + Sbjct: 65 E 65 >gi|328885617|emb|CCA58856.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712] Length = 468 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R R GMSQ +L L I+ + + E + L ++E FF Sbjct: 7 GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDARPLTVPVLLRLTEAFGVDPGFF 64 >gi|325685380|gb|EGD27486.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 122 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK +R R GMSQ++L LG++ Q + +E G ++ I+ + + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVSRNSIL 65 Query: 75 DVSP-TVCSDISSEENNVMDF 94 P + E+ V+D Sbjct: 66 AGLPVEMLVQEGQEDRGVVDL 86 >gi|322378129|ref|ZP_08052615.1| DNA-binding protein [Streptococcus sp. M334] gi|321280966|gb|EFX57980.1| DNA-binding protein [Streptococcus sp. M334] Length = 307 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGE-CLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + I VGKRIR+ R + +++E L + IT +Q+ + E G + S++++I+ L Sbjct: 2 DIKIEVGKRIRMLREMKHITRETLCDDETEITVRQLARIESGQSSPSLSKVEYIAYKLGC 61 Query: 69 PISFFFDVS 77 PIS D+ Sbjct: 62 PISHIVDMD 70 >gi|255280876|ref|ZP_05345431.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268813|gb|EET62018.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 359 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR RR LG++QE++ E LG++ V K+EKG + ++ +L+ ++ F Sbjct: 7 IRERRKALGLTQEQVAERLGVSAPAVNKWEKGNTYPDITLAAALARLLKVDLNTLF 62 >gi|205352715|ref|YP_002226516.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856901|ref|YP_002243552.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272496|emb|CAR37385.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708704|emb|CAR33030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627783|gb|EGE34126.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 178 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R+ R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|200390330|ref|ZP_03216941.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602775|gb|EDZ01321.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 178 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R+ R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|157690862|ref|YP_001485324.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157679620|gb|ABV60764.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 77 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R + G +QE + LGI+ + + E+G + I++ L + + Sbjct: 7 GRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVGQIADALNITVE---E 63 Query: 76 VSPTVCSD 83 +SP + + Sbjct: 64 LSPNLEEE 71 >gi|89897034|ref|YP_520521.1| hypothetical protein DSY4288 [Desulfitobacterium hafniense Y51] gi|89336482|dbj|BAE86077.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 215 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G IR R +S + + E +T + + E+ + L+ I+ L PIS Sbjct: 38 ANLGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISS 97 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 FF + I +E + Sbjct: 98 FFVNPQFTSTHIPAEAQRTIQI 119 >gi|325473869|gb|EGC77057.1| helix-turn-helix domain-containing protein [Treponema denticola F0402] Length = 120 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R R + ++Q +L E LG+T Q + E G + +S++ F Sbjct: 65 LRFYRTLNKLTQLQLAEKLGVTKQFISNMETGQKPISRKTAYLLSDIFGIDAGRF 119 >gi|315656316|ref|ZP_07909207.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493318|gb|EFU82918.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 185 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VG +I+ R GM+Q++LG +G ++ +YE L ++E L Sbjct: 1 MTVGDKIKKIRTFRGMTQKELGLAIGFEEKGADNRIAQYETNYRVPKRELLDKMAEALRV 60 Query: 69 PISFFFDVSPTVCSDI 84 F+ ++P D Sbjct: 61 DRQNFYTIAPGSAEDF 76 >gi|291616463|ref|YP_003519205.1| RstR1 [Pantoea ananatis LMG 20103] gi|291151493|gb|ADD76077.1| RstR1 [Pantoea ananatis LMG 20103] Length = 122 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FDVSPTV 80 R G++Q ++ + +GI QV++YE + L+HI+ + F+ Sbjct: 24 LRKEHGLTQPQMADKVGIHLTQVRRYESREAQPSLDILKHIAVTFNVSADWLIFEGGERE 83 Query: 81 CSD 83 D Sbjct: 84 PQD 86 >gi|284097787|ref|ZP_06385776.1| prophage repressor [Candidatus Poribacteria sp. WGA-A3] gi|283830687|gb|EFC34808.1| prophage repressor [Candidatus Poribacteria sp. WGA-A3] Length = 130 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 +RIR R G+SQ + + L I+ V ++E+G + + ++ +L + Sbjct: 6 ERIRSAREEAGLSQADVAKALRISASAVNQWEQGLTKNMKLNNFFALANLLGQDPRWLAT 65 Query: 76 V--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 V + +++ + L ++++ VK+R+ +++ +R + + Sbjct: 66 GKMLSRVQEPAVISPKSEYSTLTSEEKALL--HYVRRLPVKLRKTLLKFIRGLGDA 119 >gi|225575186|ref|ZP_03783796.1| hypothetical protein RUMHYD_03275 [Blautia hydrogenotrophica DSM 10507] gi|225037594|gb|EEG47840.1| hypothetical protein RUMHYD_03275 [Blautia hydrogenotrophica DSM 10507] Length = 89 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G + R + GM+QE LG +G+ + E G + ++ L+ + Sbjct: 17 GNNLSHYRRLCGMTQEALGRAVGMNRTYISALEHGRANPTLKLMSTLAIALKVDVG 72 >gi|211907951|gb|ACJ12471.1| DNA binding regulatory protein [Rhodococcus sp. T104] Length = 197 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V + +R R G+S +L G++ Q + K E+GV L + L+ P Sbjct: 12 VARNVRRYRQERGLSLAELARRSGLSKQTLSKVEQGVGNPTVETLALLGAALDMP 66 >gi|170016495|ref|YP_001727414.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803352|gb|ACA81970.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 131 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FDV 76 +++ R G+SQE + L ++ Q + ++E G + L ++E+LE+ + Sbjct: 8 QLKRMRTERGLSQEDIANQLFVSRQAISRWESGDATPDLTNLVKLAEILETSLDSLVLGT 67 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + + ++ + +F+ P Sbjct: 68 VQQEETAVDVDKIDKHEFMFDP 89 >gi|161520269|ref|YP_001583696.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344319|gb|ABX17404.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 200 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++ +L E +G + + + E+G++R + L I E L P ++F+ +S Sbjct: 29 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 88 Query: 79 T 79 Sbjct: 89 P 89 >gi|153955364|ref|YP_001396129.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855783|ref|YP_002472905.1| hypothetical protein CKR_2440 [Clostridium kluyveri NBRC 12016] gi|146348222|gb|EDK34758.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569507|dbj|BAH07491.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 78 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 R++ R LG++QE+LG+ +G++ Q + E IS + Sbjct: 3 NRLKELRESLGLTQEQLGKLVGVSRQAINAIETEKFEPSIWLAYDISNIFNC 54 >gi|118588465|ref|ZP_01545874.1| hypothetical protein SIAM614_24327 [Stappia aggregata IAM 12614] gi|118439171|gb|EAV45803.1| hypothetical protein SIAM614_24327 [Stappia aggregata IAM 12614] Length = 479 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 11/116 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G +R R G+SQ + + +G++ V + E V AS L I+ + +S F Sbjct: 8 GHTLRQIRSDFGLSQVEFAKKIGLSTAYVNQIENNNRPVTASVLLTINRIFGVDLSAFEQ 67 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLN-RYFIQIDDVKVRQKIIELVRSI 126 D +I ++ + + + +L R V + I++L ++ Sbjct: 68 NDLDRVVQDLQEIFADTQFLTASVGRQEVHELVSRA------PGVTKAIMDLYGAL 117 >gi|147921238|ref|YP_684949.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] gi|110620345|emb|CAJ35623.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] Length = 68 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R M+QE L + +G++ Q + EK S ++ I F+ Sbjct: 5 LKELRARHNMTQEDLAQKVGVSRQTIVAIEKQKYDPSLSLAFRLARCFGVKIEDIFEEDT 64 Query: 79 TVCS 82 V + Sbjct: 65 DVQN 68 >gi|52141788|ref|YP_085042.1| transcriptional regulator [Bacillus cereus E33L] gi|51975257|gb|AAU16807.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 145 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 5 IGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYL 63 >gi|49484901|ref|YP_042125.1| hypothetical protein SAR2791 [Staphylococcus aureus subsp. aureus MRSA252] gi|221142464|ref|ZP_03566957.1| hypothetical protein SauraJ_12647 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424188|ref|ZP_05600617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426865|ref|ZP_05603267.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429501|ref|ZP_05605888.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432148|ref|ZP_05608511.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435109|ref|ZP_05611160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282907039|ref|ZP_06314887.1| hypothetical protein SDAG_00526 [Staphylococcus aureus subsp. aureus Btn1260] gi|282910017|ref|ZP_06317825.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912265|ref|ZP_06320061.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282912905|ref|ZP_06320697.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282922533|ref|ZP_06330223.1| hypothetical protein SARG_00185 [Staphylococcus aureus subsp. aureus C101] gi|283959476|ref|ZP_06376917.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|293497958|ref|ZP_06665812.1| hypothetical protein SCAG_00531 [Staphylococcus aureus subsp. aureus 58-424] gi|293511548|ref|ZP_06670242.1| hypothetical protein SAZG_00185 [Staphylococcus aureus subsp. aureus M809] gi|293550157|ref|ZP_06672829.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|295429288|ref|ZP_06821910.1| hypothetical protein SIAG_01497 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589210|ref|ZP_06947851.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|304379939|ref|ZP_07362668.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|49243030|emb|CAG41764.1| putative membrane protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257273206|gb|EEV05308.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276496|gb|EEV07947.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279982|gb|EEV10569.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283027|gb|EEV13159.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285705|gb|EEV15821.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|269942291|emb|CBI50706.1| putative membrane protein [Staphylococcus aureus subsp. aureus TW20] gi|282314754|gb|EFB45140.1| hypothetical protein SARG_00185 [Staphylococcus aureus subsp. aureus C101] gi|282323005|gb|EFB53324.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282323961|gb|EFB54277.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282326083|gb|EFB56388.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329938|gb|EFB59459.1| hypothetical protein SDAG_00526 [Staphylococcus aureus subsp. aureus Btn1260] gi|283789068|gb|EFC27895.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|290919204|gb|EFD96280.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|291096889|gb|EFE27147.1| hypothetical protein SCAG_00531 [Staphylococcus aureus subsp. aureus 58-424] gi|291465506|gb|EFF08038.1| hypothetical protein SAZG_00185 [Staphylococcus aureus subsp. aureus M809] gi|295127047|gb|EFG56691.1| hypothetical protein SIAG_01497 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577721|gb|EFH96434.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|302752583|gb|ADL66760.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341519|gb|EFM07429.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436868|gb|ADQ75939.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195216|gb|EFU25604.1| hypothetical protein CGSSa00_04112 [Staphylococcus aureus subsp. aureus CGS00] gi|329315426|gb|AEB89839.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus T0131] Length = 189 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + ++ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCDLFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFAPDI 72 >gi|322382691|ref|ZP_08056546.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153337|gb|EFX45770.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 110 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ R G++Q++L E LG+ + YE G + L+ ++++ + Sbjct: 7 KQMGLRIKKLREEKGLTQDELAEMLGMKRTNIANYEAGRVIPPGNVLRDLADIFAVSTDY 66 Query: 73 F 73 Sbjct: 67 L 67 >gi|293371781|ref|ZP_06618191.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|292633233|gb|EFF51804.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] Length = 70 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G R+R +R+ L +SQEKL I + E G V + + I++ L P+ Sbjct: 3 INELFGIRVREQRIALNLSQEKLANIADIDRTYLPDIENGKRNVSLAVAEKIAKALNVPL 62 Query: 71 SFFFDV 76 + + Sbjct: 63 TKLLET 68 >gi|255037817|ref|YP_003088438.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254950573|gb|ACT95273.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 109 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G R R G+SQE LG L ++ + + E R+ LQ+++ L+ ++ Sbjct: 28 GSNFRKLREWAGLSQEALGASLNVSASVINRIENNKRRLDIQILQNLANALQLDVA 83 >gi|147920208|ref|YP_686025.1| transcription regulator [uncultured methanogenic archaeon RC-I] gi|121683053|sp|Q0W4J4|Y1526_UNCMA RecName: Full=Putative HTH-type transcriptional regulatory protein UNCMA_15260 gi|110621421|emb|CAJ36699.1| predicted transcription regulator [uncultured methanogenic archaeon RC-I] Length = 324 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+ +R R +S +L LG++ + + KYE G+N + E+L++PI+ Sbjct: 129 GETLRSLREAKNISLGELAMALGVSRRTISKYESGMN-ATIEAALKLEEILDAPIA 183 >gi|313899270|ref|ZP_07832786.1| cupin domain protein [Clostridium sp. HGF2] gi|312955950|gb|EFR37602.1| cupin domain protein [Clostridium sp. HGF2] Length = 195 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 37/75 (49%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ N+G+ I+ RR M+ + + E ++ + + E+G+ + L+ +++ L Sbjct: 4 YMNKNIGELIKQRRTENKMTLKDISEATELSIGYLSQLERGLTSIAHDTLKKVAKALGVE 63 Query: 70 ISFFFDVSPTVCSDI 84 +++F + T + Sbjct: 64 MTYFMEQPKTKEKAV 78 >gi|313207294|ref|YP_004046471.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312446610|gb|ADQ82965.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315023411|gb|EFT36420.1| XRE family transcriptional regulator [Riemerella anatipestifer RA-YM] gi|325335232|gb|ADZ11506.1| transcriptional regulator, XRE family [Riemerella anatipestifer RA-GD] Length = 108 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK I+ R ++QE+LG+ +G+ Q+ K E N + + + L++ I+F Sbjct: 39 LGKMIKTARQERNLTQEQLGQIVGVQKSQISKLESSANSATIDTIIKVFKALKAEINF 96 >gi|291550352|emb|CBL26614.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus torques L2-14] Length = 119 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FFF 74 G+ I+ R G+S+ +L + L I + + E L + +L+ + FFF Sbjct: 14 GQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYELVTLLDVSVDQFFF 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S + + ++D +S D Sbjct: 74 PEREQEKSTRRRQLDTMLDGMSEKD 98 >gi|300774128|ref|ZP_07083997.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|300760299|gb|EFK57126.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 195 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +R G++Q+KL E G+T + +Q+ EKG LQ I+E L+ I Sbjct: 6 ISFNLSQKRSDKGLTQQKLAEIAGLTTRTIQRIEKGEVIPQGYTLQRIAEALDISI 61 >gi|256397793|ref|YP_003119357.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364019|gb|ACU77516.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 200 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 5/100 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG R+R R G++ L E GI + + E G + L ++EV Sbjct: 15 RRHVLDA-VGPRLRELRHRRGLTLADLAERTGINESTLSRLEGGARKPTLELLLPLAEVY 73 Query: 67 ESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQ 102 P+ P + + +S P G+Q Sbjct: 74 AVPLDDLVGAPRTGDPRIHLRPVNRHGMTHIPLSQPGGVQ 113 >gi|268590685|ref|ZP_06124906.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291314079|gb|EFE54532.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 84 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R G+++ +L L I+ QQV +YE G ++ R+ E+ ++F Sbjct: 16 LKKLRKQNGITEGELAILLKISQQQVSRYENGKTQLTIGRVNQYLEIFGLDWNYF 70 >gi|254455584|ref|ZP_05069013.1| transcriptional regulator, XRE family [Candidatus Pelagibacter sp. HTCC7211] gi|207082586|gb|EDZ60012.1| transcriptional regulator, XRE family [Candidatus Pelagibacter sp. HTCC7211] Length = 477 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 6/111 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G +I+ R LG+ KL E L I+ + E G ++ L + E L + Sbjct: 4 LDLKIGPKIKAFRRQLGLQANKLAEDLSISPSYLNLIESGKRKIDGDLLLKVCEKLNIEL 63 Query: 71 SFFFDVSPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQIDDVKVR 116 S + + SE +D + P+ L +I VR Sbjct: 64 SHLTSKTDINLQNTISEILDDKLFEDLDILG-PEVKDLVSTNPKIGKAIVR 113 >gi|172064645|ref|YP_001812295.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171998130|gb|ACB69046.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 140 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +G+R+ R G++Q +L LG++ Q Q YE G R+ S L Sbjct: 15 VALGERMAQFRKARGITQVQLATTLGVSQQTYQSYEVGRRRIQVSALAD 63 >gi|66396007|ref|YP_240340.1| ORF046 [Staphylococcus phage ROSA] gi|62636427|gb|AAX91538.1| ORF046 [Staphylococcus phage ROSA] Length = 107 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 10/85 (11%), Positives = 33/85 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R ++ +G+ + +YE G ++ + I+ L+ + Sbjct: 7 IGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSGKIPMEDIAEIANALKVTPEYLL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + +++ ++ ++ + Sbjct: 67 LKNRQTENEVQHRAAHLEGELTDDE 91 >gi|54023278|ref|YP_117520.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54014786|dbj|BAD56156.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 187 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 4/106 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R R G+S ++ GI + + E G L + L+ P S Sbjct: 13 IAASLRRERTRAGLSLSEVAARAGIAKSTLSQLESGSGNPSLETLWALCVALDMPFSRLL 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 D V I + E + + L R+ + Sbjct: 73 DPPRPVVHVIRAGEGPAVAAERSDYHATLLAA----GPSNTRRDLF 114 >gi|296277306|ref|ZP_06859813.1| phage repressor [Staphylococcus aureus subsp. aureus MR1] Length = 107 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 10/85 (11%), Positives = 33/85 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R ++ +G+ + +YE G ++ + I+ L+ + Sbjct: 7 IGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYLL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + +++ ++ ++ + Sbjct: 67 LKNRQPENEVQHRAAHLEGELTDDE 91 >gi|255658093|ref|ZP_05403502.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849858|gb|EEX69865.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 143 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+SQ ++ LGIT KYE G + +L+ ++++ + Sbjct: 6 QRLRALRKREGLSQTEVARILGITRTAYNKYESGASAPS-RKLRELAQLYHVSTDYILGE 64 Query: 77 SPTVCSDISSEENNVMDFIS 96 + + + + Sbjct: 65 EDALAEKLREADARTSSHLR 84 >gi|255655401|ref|ZP_05400810.1| MerR family transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451389|ref|ZP_06893127.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296880261|ref|ZP_06904226.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259805|gb|EFH06662.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296428704|gb|EFH14586.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 188 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 38/80 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R + + + ++ + + E+ S L+ I+EVL++P+ F Sbjct: 2 LGEKMRNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLYMFM 61 Query: 75 DVSPTVCSDISSEENNVMDF 94 D + T I E+ +M F Sbjct: 62 DDNNTDDLVIRKEDRVMMKF 81 >gi|255519172|ref|ZP_05386848.1| hypothetical protein CdifQCD-_18829 [Clostridium difficile QCD-97b34] Length = 124 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 42/112 (37%), Gaps = 13/112 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ + Q+ G+ LG++ Q+ YE G ++ + I + Sbjct: 13 QRLKDIRLSKKLKQKDFGKKLGLSLSQISSYETGHRKIPQRTINDICREFNVNEQWLLHG 72 Query: 77 SPTVCSDISSEENNVMDFIS-----------TPDGLQLN--RYFIQIDDVKV 115 + DI+ + + + + ++ +++I + ++ Sbjct: 73 EGEMFVDITEDLETSEEIKTMIKKIFALEDEDREAIEKIIDNAYLKIKNEEL 124 >gi|254418301|ref|ZP_05032025.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3] gi|196184478|gb|EDX79454.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3] Length = 67 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L E LG++ Q V E G I+ + + PI F Sbjct: 3 NRLKVLRAERDWSQAHLAELLGVSRQTVNALETGRYDPSLPLAFKIARIFDQPIESIFSE 62 Query: 77 SPTVC 81 Sbjct: 63 EENNG 67 >gi|187777637|ref|ZP_02994110.1| hypothetical protein CLOSPO_01229 [Clostridium sporogenes ATCC 15579] gi|187774565|gb|EDU38367.1| hypothetical protein CLOSPO_01229 [Clostridium sporogenes ATCC 15579] Length = 78 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R + G++QE+LG+ +G++ Q + E I ++ I F F Sbjct: 3 NRIKEFREVFGLTQEQLGKLVGVSRQAINAIETEKFEPSIWLAYDICKIFHRSIEEVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESE 66 >gi|146298229|ref|YP_001192820.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152647|gb|ABQ03501.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 138 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++G+ I R + M QE L + LG + Q + E + ++L+ +++ L Sbjct: 8 KHIGRNISRIRELRDMKQEALAQALGTSQQTISAIENSET-IDDAKLEEVAKALGV 62 >gi|52080997|ref|YP_079788.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52004208|gb|AAU24150.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] Length = 111 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 74 FDVSPTVCSDISSE---ENNVMDFIST 97 D D + EN V D +++ Sbjct: 62 LDEKDETEYDGQLDSEWENLVRDAMAS 88 >gi|60682937|ref|YP_213081.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|60494371|emb|CAH09167.1| putative DNa-binding protein [Bacteroides fragilis NCTC 9343] Length = 140 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G+ ++ R + G +QE++ + + I YE G + + L+ IS + Sbjct: 27 VNQIIGENLKKIRELSGFTQEQVAQSIKIERSTYSNYEGGTREIPYTILEDISNLFGCEP 86 Query: 71 SFFFDVSPTVCSDI 84 F+ + ++I Sbjct: 87 FILFEDNIQTNNEI 100 >gi|315268235|gb|ADT95088.1| transcriptional regulator, XRE family [Shewanella baltica OS678] Length = 204 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R++ R LGM+Q +L + + +QK E+G + ++ +++ L++ F Sbjct: 1 MDIAERVKRLRKALGMTQYELADLVSTAQTSIQKLERGDTK-NPRNIEALAKALQTTPEF 59 Query: 73 F-FDVSPTVCSDISSEENNVMDFIS 96 F V + + + N + IS Sbjct: 60 LRFGVGELDNATVVASAGNYLPLIS 84 >gi|294664260|ref|ZP_06729632.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605970|gb|EFF49249.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 113 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R+R R ++QE LG G + ++ +YEKGVN + +++ L P++ Sbjct: 12 NRLRHARQKAELTQEALGVAAGLAPEVARTRINRYEKGVNECDLRTAKRLADALGMPLAA 71 Query: 73 FFDVSPTVCSDISS 86 FF + V I + Sbjct: 72 FFAETDEVADAIQA 85 >gi|282880753|ref|ZP_06289450.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] gi|281305374|gb|EFA97437.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] Length = 112 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ I+ R+ ++QE+LGE +G+ Q+ + EKG + + + + + L Sbjct: 44 IGEAIKKARVEQNLTQEELGERIGVKRAQISRLEKGYS-ISIPTMSKVFKALGVS 97 >gi|226325982|ref|ZP_03801500.1| hypothetical protein COPCOM_03796 [Coprococcus comes ATCC 27758] gi|225205524|gb|EEG87878.1| hypothetical protein COPCOM_03796 [Coprococcus comes ATCC 27758] Length = 219 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 13/108 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK VG+R++ RR L ++ +LG+ +G+ +Q+YE + V R Sbjct: 1 MKTLKKEITFTAKQVGERVKERRTELNLTMPELGKRIGVNKSTIQRYE--ADGVDPKRTM 58 Query: 61 HI---SEVLESPISFF--------FDVSPTVCSDISSEENNVMDFIST 97 I +E L + + +D D+ +D +ST Sbjct: 59 IINGLAEALLTTPEWLTGLSEDKEYDSRTLCEKDLEEHIKKYIDIVST 106 >gi|255601036|ref|XP_002537591.1| conserved hypothetical protein [Ricinus communis] gi|223515814|gb|EEF24793.1| conserved hypothetical protein [Ricinus communis] Length = 109 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + P P+ + +GKR++ R SQE L G+ + E+G+ L I Sbjct: 11 RSPTPISVALGKRLKECRHAAEKSQETLAFEAGVDRVYISSIERGLANPSVETLATICYS 70 Query: 66 LESPISFFF 74 L + F Sbjct: 71 LGVTLGELF 79 >gi|254420279|ref|ZP_05034003.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196186456|gb|EDX81432.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 371 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G+++RL R+ G S E +GE + T Q + + E G ++ +++VL +F Sbjct: 6 RFAGEQLRLARLAHGYSLEDVGERISATRQFIHQLETGSRSPSDEVMEALADVLGVTPAF 65 Query: 73 FFDVSPTV 80 P+ Sbjct: 66 LAAAIPST 73 >gi|118479657|ref|YP_896808.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|118418882|gb|ABK87301.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] Length = 190 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRL 74 Query: 74 FDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 V V E V F T + G++++R Sbjct: 75 MVVGEPVAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRA 117 >gi|325068599|ref|ZP_08127272.1| transcriptional regulator, XRE family protein [Actinomyces oris K20] Length = 76 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V RI + R +S+ +L E LG+ +Q V E+G I+ + P+ Sbjct: 5 DDFVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFDVPVE 64 Query: 72 FFFDVSP 78 F + Sbjct: 65 SVFSLEE 71 >gi|300857155|ref|YP_003782139.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437270|gb|ADK17037.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 371 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K + +R ++Q+KL E +G++ V K+E G + + L ++ I Sbjct: 4 INIAKTLVAKRKEKAITQDKLAEYIGVSKASVSKWETGQSYPDITFLPQLAAYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + D Sbjct: 64 LIGYEPQMTKD 74 >gi|212703137|ref|ZP_03311265.1| hypothetical protein DESPIG_01176 [Desulfovibrio piger ATCC 29098] gi|212673403|gb|EEB33886.1| hypothetical protein DESPIG_01176 [Desulfovibrio piger ATCC 29098] Length = 117 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG I RR +LG +Q E LG+ + + E+G+ RL+ I+E+LE ++ Sbjct: 15 VIVGANITARRKLLGWNQAAFAERLGMGADSLSRIERGLVAPRFQRLEEIAEILECSVAE 74 Query: 73 FF---DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F + + SS + + ++ + + L Sbjct: 75 LFMTQEDLEKYRINFSSPKQEELPTVTRSEIIFLAE 110 >gi|210610920|ref|ZP_03288645.1| hypothetical protein CLONEX_00835 [Clostridium nexile DSM 1787] gi|210152220|gb|EEA83227.1| hypothetical protein CLONEX_00835 [Clostridium nexile DSM 1787] Length = 192 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI+ R G++Q +LG LG ++ +YE L I+++L Sbjct: 1 MVLGERIKRIRTFRGLTQRELGLKLGYEERNADVRIAQYESSYRVPKKDTLMEIAKILNI 60 Query: 69 PISFFFDVSPTVCSDI 84 F +P DI Sbjct: 61 NYINFVTEAPGCAEDI 76 >gi|188590232|ref|YP_001921142.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] gi|188500513|gb|ACD53649.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] Length = 134 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++Q LG LG+ + YE G + I+ + + + S Sbjct: 7 RIKDLRKSKKLTQTDLGRILGVGKTTISMYENGNSTPNDEIKFKIAAFFDVTLDYLLGKS 66 Query: 78 PTVCSD 83 D Sbjct: 67 DIKKYD 72 >gi|196048466|ref|ZP_03115641.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] gi|196020723|gb|EDX59455.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] Length = 114 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I G+ ++ R ++Q +L E L ++ Q++ +E G + L I+ + Sbjct: 2 IIFGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLD 60 >gi|146339002|ref|YP_001204050.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191808|emb|CAL75813.1| putative transcriptional regulator, XRE family [Bradyrhizobium sp. ORS278] Length = 481 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 15/112 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ +L E LGI+ V E+ V A L ++EV + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAEVYD----- 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D+ +D + + S P F QI+ K Q++ +L Sbjct: 64 -LDLRDLATADEDRFFAELNEIFSDP-------LFRQIELPK--QELRDLAE 105 >gi|332828460|gb|EGK01165.1| hypothetical protein HMPREF9455_00205 [Dysgonomonas gadei ATCC BAA-286] Length = 184 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +DI +G+R++ R L M+QE+ I ++ KYE G + S L+ I+ Sbjct: 3 IDIKEIGQRLKGLREALDMTQEQFAASCNIPLEEYVKYESGEKDLTISVLKGIASAHNVD 62 Query: 70 ISFF-FDVSPTVCS 82 +S F P + S Sbjct: 63 VSVLMFADEPRMSS 76 >gi|319789030|ref|YP_004150663.1| transcriptional regulator, XRE family [Thermovibrio ammonificans HB-1] gi|317113532|gb|ADU96022.1| transcriptional regulator, XRE family [Thermovibrio ammonificans HB-1] Length = 222 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++V +R+R R LG+SQ K+ + LG++ + Q+YE+ + L+ I + Sbjct: 1 MSVNERLRKLREHLGLSQSKMAKELGVSLKTYQRYEQVGYDIPERALRQIEATFNVNPEW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 + + + I+TP+ Sbjct: 61 LRQGKGEMFRPKTEAQ-----IIATPE 82 >gi|253566069|ref|ZP_04843523.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945173|gb|EES85611.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 117 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G+ ++ R + G +QE++ + + I YE G + + L+ IS + Sbjct: 4 VNQIIGENLKKIRELSGFTQEQVAQSIKIERSTYSNYEGGTREIPYTILEDISNLFGCEP 63 Query: 71 SFFFDVSPTVCSDI 84 F+ + ++I Sbjct: 64 FILFEDNIQTNNEI 77 >gi|227432664|ref|ZP_03914637.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351546|gb|EEJ41799.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 68 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R ++Q +L L +T Q V EKG I+E + PI F F Sbjct: 3 NRIQELRKSRKLTQAELAAELEVTRQTVLSLEKGKYNASLFLAHRIAEFFDLPIEDVFIF 62 Query: 75 DVSP 78 + Sbjct: 63 EGGK 66 >gi|218899660|ref|YP_002448071.1| DNA-binding protein [Bacillus cereus G9842] gi|218541106|gb|ACK93500.1| DNA-binding protein [Bacillus cereus G9842] Length = 190 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ +R R +S E+L G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRL 74 Query: 74 FDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 V V E V + F T + G++++R Sbjct: 75 MVVGEPVAVARCGEGFAVDEGQAWHLETMFRYTKETGMEMHRA 117 >gi|196032247|ref|ZP_03099661.1| DNA-binding protein [Bacillus cereus W] gi|228915928|ref|ZP_04079503.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|195994998|gb|EDX58952.1| DNA-binding protein [Bacillus cereus W] gi|228843746|gb|EEM88820.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 374 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|160916078|ref|ZP_02078285.1| hypothetical protein EUBDOL_02105 [Eubacterium dolichum DSM 3991] gi|158431802|gb|EDP10091.1| hypothetical protein EUBDOL_02105 [Eubacterium dolichum DSM 3991] Length = 129 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 12/96 (12%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G +QE+L L + Q V K+EKG++ A L I+++L++ +S + + Sbjct: 2 RKAKGYTQEELAIKLNVVRQTVSKWEKGLSVPDAHILSKIADILDTKVSILLGSTISDEI 61 Query: 83 DISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQ 117 D EN V + ++ + L I + + R+ Sbjct: 62 D----ENAVAEQLAKISEQL-------AIKNRRNRK 86 >gi|149915319|ref|ZP_01903846.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149810608|gb|EDM70449.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 466 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 54/141 (38%), Gaps = 25/141 (17%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R LG++Q+ LG++ + + E V + + +++ Sbjct: 6 LYAGAKLRETRQRLGLTQKDFATKLGVSLPYLNQMENNNRPVSTTVVLALAQEFG----- 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP-----------------DGLQLNRYFIQIDDV-- 113 FDV+ D +++ + ++ P + L R F+++ Sbjct: 61 -FDVTELSTGDAERMVSDMREALADPVFADDPPPLADLRLTASNAPALARAFLELHRAYR 119 Query: 114 KVRQKIIELVRSIVSSEKKYR 134 + +++ L ++ + + + Sbjct: 120 QTHERLASLDEALGREDSRTQ 140 >gi|118593092|ref|ZP_01550479.1| Transcriptional repressor [Stappia aggregata IAM 12614] gi|118434399|gb|EAV41053.1| Transcriptional repressor [Stappia aggregata IAM 12614] Length = 313 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R + SQ +L + L T Q V ++E G G L+ ++ + + + Sbjct: 2 KIKELREKMNWSQGELAKLLSRTQQTVSRWESGATEPGIEALRDMAMIFGCSVDDILGLE 61 Query: 78 PTVCSDISSEENNVMDFIS 96 S+ + + D ++ Sbjct: 62 GISPSNKLTVSISHADALA 80 >gi|104781316|ref|YP_607814.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95110303|emb|CAK15010.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 186 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G + + L + + + + E+G++R + L ISE L+ P ++F+ P Sbjct: 15 VRDLRKHRGFTLDDLATRMNRSVGFLSQVERGLSRPTVADLTAISEALQVPTTYFYQAVP 74 Query: 79 TVCSD 83 D Sbjct: 75 PREID 79 >gi|94967258|ref|YP_589306.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549308|gb|ABF39232.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 119 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P V+ G R+ R +SQ +LG +G++ + E+G V ++ +++ L+ Sbjct: 19 PAIVNTLFGHRLGSARRARRISQTELGRRIGVSRVTIANIERGGQNVQIAQAFVLAKALD 78 Query: 68 SPISFFFDVSPTVCS-DISSEENNVMDFIS 96 ++ PT + + + N F+ Sbjct: 79 IHP---MELIPTEHDVEEAHQPTNEDRFVR 105 >gi|20092778|ref|NP_618853.1| helix-turn-helix family protein [Methanosarcina acetivorans C2A] gi|19918074|gb|AAM07333.1| helix-turn-helix family protein [Methanosarcina acetivorans C2A] Length = 67 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I++ R I ++QE L E +G+T Q + EKG +S + ++ + F Sbjct: 3 NNIKVYRAIHDLTQENLAEKVGVTRQTINAIEKGKYDPSLDLAFKLSRLFKASVEDIF 60 >gi|148259560|ref|YP_001233687.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402766|ref|YP_004282847.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401241|gb|ABQ29768.1| putative transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325049627|dbj|BAJ79965.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 203 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D VG R+R R I G++Q +L G+T + E+G S L+ I + + ++ Sbjct: 22 DAGVGARLRRMRQIFGLTQRELARRAGVTNGAISLIEQGRVSPSISSLKKILDGIPMSLA 81 Query: 72 FFFDVSPTVCSDISSEENNVMDF 94 FF + T D+ ++ + Sbjct: 82 EFFTLDLTAPEDVFFTAADLTEI 104 >gi|329948033|ref|ZP_08294934.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523172|gb|EGF50273.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 62 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q +LG LG++ Q + EKG I+ E+ + F Sbjct: 5 VRSLREARGLTQAQLGAALGVSRQSINSIEKGKYDPSLPLAIAIARYFETAVEEIF 60 >gi|319785314|ref|YP_004144790.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171202|gb|ADV14740.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 132 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IRL RM ++ ++L E +G++ +Q+ EKG +V + + ++ FD Sbjct: 41 GKTIRLGRMQHRLTGQELAERIGVSRSTLQRIEKGDPKVEIGLMFEAAAIVGV---KLFD 97 Query: 76 VSPTVCSDISSEENNVMDFI 95 + ++ ++ + + Sbjct: 98 ADGKAITALTGRMDDRIALL 117 >gi|302872695|ref|YP_003841331.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575554|gb|ADL43345.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 100 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 12 DINVGK--RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 DI VG +I R+ +SQ++L LGI+ V K E G L I++ L Sbjct: 30 DILVGIAVKIIQYRIKNNLSQKELAAKLGISQAMVSKLESGDYNPTVKMLYEIAQNLG 87 >gi|300811797|ref|ZP_07092268.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497213|gb|EFK32264.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 136 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R G+SQ++L E L T +V +E G + S + ++ + + + Sbjct: 5 SKLRDLRKKNGLSQKELAEKLMTTQAKVASWENGDSVPNISYIAKLAVLYDVSADYLLKD 64 Query: 77 SPTVCSDISSEEN 89 + E + Sbjct: 65 DKQEGHEPGEEMD 77 >gi|239820585|ref|YP_002947770.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805438|gb|ACS22504.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R RM +S L + GI+ + + E+G+ L+ +S+ L FF Sbjct: 9 IGAQVRALRMAADVSGGALAKASGISASMLSRIERGLVSPSVETLERLSKGLGVSAPRFF 68 >gi|229056560|ref|ZP_04195967.1| Transcriptional regulator [Bacillus cereus AH603] gi|228720773|gb|EEL72330.1| Transcriptional regulator [Bacillus cereus AH603] Length = 134 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R+ +SQE+ G+ +G+T V K+E G G L+ +S+ I + Sbjct: 18 VEIKDRLKQIRIDSKLSQEQFGKEVGLTKGTVSKFENGKAFPGRETLEKVSKKFNVTIDY 77 Query: 73 FFDVSPTV 80 + S + Sbjct: 78 LYGKSKEI 85 >gi|288869818|ref|ZP_05976459.2| transcriptional regulator [Methanobrevibacter smithii DSM 2374] gi|288860382|gb|EFC92680.1| transcriptional regulator [Methanobrevibacter smithii DSM 2374] Length = 186 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + N+G R++ R + ++ + E L I ++YE G + AS L I+ + Sbjct: 5 NEYNKNIGNRVKELRELSDITIQDFAEELDIDETMYKQYENGEVDIPASFLCEIANKFQV 64 Query: 69 PISFFFDVSPTVCS 82 + T + Sbjct: 65 DLGLLLTGEETRMN 78 >gi|254510250|ref|ZP_05122317.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221533961|gb|EEE36949.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 155 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R+ R GM+Q +L LG+ + +E ++ A++L ++ +L I + Sbjct: 41 GDRVAGAREAAGMTQTQLARRLGVKKATIVAWEDDLSEPRANKLSMMAGMLNVSIMWLLT 100 Query: 75 -DVSPTVCSDISSEENNVMDFI 95 + TV + ++ + + ++ + Sbjct: 101 GEGDGTVATALAGDTDVELNQL 122 >gi|254381609|ref|ZP_04996973.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194340518|gb|EDX21484.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 231 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 9/99 (9%) Query: 1 MVGNKKIP--NPVDI-------NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 M K P NP D+ ++G+RI RR LG+S+E+LG G + E+ Sbjct: 1 MSAMKSTPSTNPQDVSETAGRTDLGRRIAARRTALGLSREELGRKCGADGNYIAYLEEHA 60 Query: 52 NRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENN 90 L +++ L + S S+ + Sbjct: 61 ASPAIGTLVRMADALGVTVDDLTGASAGRVRGRSTARRD 99 >gi|190894243|ref|YP_001984537.1| hypothetical protein RHECIAT_PB0000280 [Rhizobium etli CIAT 652] gi|190699904|gb|ACE93987.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 259 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +R R + + KL LGIT Q +YE GV+R+ SRL H+ EVL+ Sbjct: 136 LREARDKRKLPRSKLAPLLGITKQVYGRYENGVSRLTVSRLIHLCEVLD 184 >gi|206974503|ref|ZP_03235419.1| DNA-binding protein [Bacillus cereus H3081.97] gi|206747146|gb|EDZ58537.1| DNA-binding protein [Bacillus cereus H3081.97] Length = 374 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|113460765|ref|YP_718832.1| transcriptional regulator [Haemophilus somnus 129PT] gi|112822808|gb|ABI24897.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 128 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI------- 70 +IR+ R I SQE + E L ++ K E G + +L+ I+++ + Sbjct: 12 KIRVMREINQWSQEDMAEKLDMSPTGYAKIEHGKTNLTIEKLKQIAQIFNIDVVELIASQ 71 Query: 71 --SFFFDVSPTVCSD 83 SFFF + + Sbjct: 72 DKSFFFSIGDNTNNH 86 >gi|254974937|ref|ZP_05271409.1| MerR family transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092326|ref|ZP_05321804.1| MerR family transcriptional regulator [Clostridium difficile CIP 107932] gi|255100407|ref|ZP_05329384.1| MerR family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306352|ref|ZP_05350523.1| MerR family transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314064|ref|ZP_05355647.1| MerR family transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516744|ref|ZP_05384420.1| MerR family transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649843|ref|ZP_05396745.1| MerR family transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683001|ref|YP_003214286.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686599|ref|YP_003217732.1| hypothetical protein CDR20291_1234 [Clostridium difficile R20291] gi|306519941|ref|ZP_07406288.1| hypothetical protein CdifQ_07697 [Clostridium difficile QCD-32g58] gi|260209164|emb|CBA62385.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212615|emb|CBE03634.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 188 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 38/80 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R + + + ++ + + E+ S L+ I+EVL++P+ F Sbjct: 2 LGEKMRNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLYMFM 61 Query: 75 DVSPTVCSDISSEENNVMDF 94 D + T I E+ +M F Sbjct: 62 DDNNTDDLVIRKEDRVMMKF 81 >gi|62180230|ref|YP_216647.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127863|gb|AAX65566.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714702|gb|EFZ06273.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 200 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 35/90 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +RI+ R MS ++L G++ + + E + L I+ + + Sbjct: 18 INEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSV 77 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + F +V+ + + + + G Sbjct: 78 ADFVNVASEPMVHLIDRDATPVLWRGEKGG 107 >gi|86141620|ref|ZP_01060166.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis MED217] gi|85832179|gb|EAQ50634.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis MED217] Length = 193 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R G++ + ++ + + E G L +I L++ ++ FF Sbjct: 8 IGKRIREIRKEKGLTINTVASSAEVSNGLISRVENGRTIPSLPVLLNIIAALDTEVASFF 67 Query: 75 DVSPTVC 81 + P Sbjct: 68 NSLPQGG 74 >gi|269122272|ref|YP_003310449.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268616150|gb|ACZ10518.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 180 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R ++Q +L + ++ + + E+ + S L+ I EVL + I Sbjct: 1 MKIGEKLKSLRQEKLLTQNELADRCELSKGFISQLERDLTSPSLSTLEDILEVLGTNIRD 60 Query: 73 FFD 75 FF+ Sbjct: 61 FFN 63 >gi|225866477|ref|YP_002751855.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225788695|gb|ACO28912.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 190 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSRL 74 Query: 74 FDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 V V E V F T + G++++R Sbjct: 75 MVVGEPVAVARCGEGFAVDAGQAWHLETMFRYTKETGMEMHRA 117 >gi|118480114|ref|YP_897265.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228917662|ref|ZP_04081203.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229094144|ref|ZP_04225224.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42] gi|229187275|ref|ZP_04314420.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1] gi|118419339|gb|ABK87758.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228596285|gb|EEK53960.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1] gi|228689247|gb|EEL43068.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42] gi|228841899|gb|EEM87005.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 79 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFF 74 F Sbjct: 66 EIF 68 >gi|329769730|ref|ZP_08261131.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325] gi|328838092|gb|EGF87710.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325] Length = 218 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ + E LG+T +EKG L+ +++ S+F Sbjct: 6 RLQALRKKHNISQTAIAEHLGVTRSAYNGWEKGKFIPNKKNLEELADYFNVETSYF 61 >gi|319787830|ref|YP_004147305.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466342|gb|ADV28074.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 73 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V IR R G M+Q+ L + G+T Q + E G I+ + Sbjct: 8 VANEIRRLRFERGEMTQQALADACGVTRQTIIALEAGRYAPSLELAFRIARAFGVGVEDV 67 Query: 74 F 74 F Sbjct: 68 F 68 >gi|291279358|ref|YP_003496193.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754060|dbj|BAI80437.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 186 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R G S +L + +G T + E G + L+ I+ IS Sbjct: 8 LGEKLRNLRKSQGYSLNQLAKAVGKTKSYISMIENGKAVPSMATLKSITNFFNVTISDLL 67 Query: 75 DVSP 78 + + Sbjct: 68 EENE 71 >gi|302866395|ref|YP_003835032.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302569254|gb|ADL45456.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] Length = 255 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ +R R G+SQ L ++ + V E G ++ + + +++ L P+ Sbjct: 6 VGELLRQWRQHRGLSQLDLAIAADVSARHVSLVETGKSKPSSDMILRLADQLHVPL 61 >gi|260461769|ref|ZP_05810015.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259032410|gb|EEW33675.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 138 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IRL RM ++ ++L E +G++ +Q+ EKG +V + + ++ FD Sbjct: 47 GKTIRLGRMQHRLTGQELAERIGVSRSTLQRIEKGDPKVEIGLMFEAAAIVGV---KLFD 103 Query: 76 VSPTVCSDISSEENNVMDFI 95 + ++ ++ + + Sbjct: 104 ADGKAITALTGRMDDRIALL 123 >gi|227535738|ref|ZP_03965787.1| transcription regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186627|gb|EEI66694.1| transcription regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 389 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ RM+ G+S+++L L +T Q + YE + + +S++ + +FFF Sbjct: 4 GENLKNLRMLYGVSRKELANKLKLTEQSIGNYENESFSPEINTVIEMSKIFDVKSTFFFK 63 Query: 76 VSPTVC 81 P Sbjct: 64 KFPRNG 69 >gi|99082865|ref|YP_615019.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99039145|gb|ABF65757.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 188 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S E + G++ V + E+G + + L +++ L+ + + Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLEA 73 Query: 77 SPTV 80 Sbjct: 74 GEAA 77 >gi|6249458|emb|CAB60047.1| hypothetical protein [Legionella pneumophila] Length = 244 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ RM ++ + L E + ++ YE+G G ++ ++ LE SF Sbjct: 25 IGLRIKQERMSKKLTMKALAELTDNLNISRINNYERGERTPGPEEIKQLARALEVSPSFL 84 Query: 74 FDVSPTVCSDISSE 87 +S + Sbjct: 85 MCLSDDRQGSFKTP 98 >gi|52784388|ref|YP_090217.1| hypothetical protein BLi00575 [Bacillus licheniformis ATCC 14580] gi|319648680|ref|ZP_08002891.1| hypothetical protein HMPREF1012_03930 [Bacillus sp. BT1B_CT2] gi|52346890|gb|AAU39524.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317389099|gb|EFV69915.1| hypothetical protein HMPREF1012_03930 [Bacillus sp. BT1B_CT2] Length = 86 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ MSQ++L E +G++ Q + EKG I+E ++ F Sbjct: 16 ISNKVYEYRVLARMSQQELAEKVGVSKQTIFVMEKGNYVPTLLLAFRIAEFFNVDVNEIF 75 >gi|329577865|gb|EGG59286.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 131 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|310642951|ref|YP_003947709.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309247901|gb|ADO57468.1| Predicted transcriptional regulator [Paenibacillus polymyxa SC2] Length = 112 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R++ ++ E + LGIT Q YE G V + L ++++LE + S Sbjct: 6 RLKKERILKKLTHEDMATKLGITRQAYGNYESGKRDVDSQTLSKLADILEVSGDYLLGRS 65 Query: 78 PTVCSDISSE 87 + Sbjct: 66 ISKGPSEGHA 75 >gi|307354949|ref|YP_003896000.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307158182|gb|ADN37562.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 64 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R M+Q +L E +G+ + + EKG +++ L++ I F Sbjct: 4 RIREFRAKKDMTQAQLAEAVGVRRETIVFLEKGKYNPSLKLAHDVAKALDTTIEELF 60 >gi|304407873|ref|ZP_07389524.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304343356|gb|EFM09199.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 95 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G RI R G++Q++L + LGI + + E A ++ +S+ + PI F Sbjct: 8 IGNRISRIRKHRGITQQQLADALGIDRASLSQIETCRYSPRAETIRKLSDFFQLPIGDIF 67 Query: 74 FDVSPTVCSD 83 F+ D Sbjct: 68 FNPLLEADRD 77 >gi|289178728|gb|ADC85974.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 348 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 12 DINVGKR--IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 D +G + ++ R M+QE+L +G++ Q V K+E +L + ++ Sbjct: 11 DRTMGFKDNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKAYPEMDKLLMLCDMFGVS 70 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFI 95 + V V + I+ N+V D + Sbjct: 71 LDDL--VMGDVRNGIAMSANHVEDGL 94 >gi|228944445|ref|ZP_04106818.1| Transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815347|gb|EEM61595.1| Transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 66 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKVKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|220916034|ref|YP_002491338.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953888|gb|ACL64272.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 260 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R +S EKL + G++ + + E G + + L IS L P S Sbjct: 80 VGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSALI 139 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 T + E+ +S+ DG +R D+ + R + EL Sbjct: 140 TARSTGGLHVLRAEH--AKVLSSHDGSYSSRALFPFDEPR-RVEFYEL 184 >gi|146341324|ref|YP_001206372.1| putative HTH-type transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194130|emb|CAL78149.1| putative HTH-type transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 184 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G R+R R+ GM L + +G + K E G L + L+ ++ Sbjct: 1 MNIGPRLRRARLSKGMRMRDLAQIVGCDESMISKIEAGKVMPSLPMLDKMVHALDRDMAS 60 Query: 73 FFDVSPTVCSDISSEENNV 91 FF + + E+ + Sbjct: 61 FFGLRVDDYKQVQKPEDRM 79 >gi|111222160|ref|YP_712954.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111149692|emb|CAJ61384.1| Putative transcriptional regulator [Frankia alni ACN14a] Length = 100 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFD 75 +R+R R + G++Q+++ + G+T V E G R + + I+ L+ + D Sbjct: 29 ERLRAIRQLRGLTQQQVADRCGLTRTAVTDLESGRRRDISLGQALIIASALDVDLGRLLD 88 Query: 76 VSP 78 P Sbjct: 89 PEP 91 >gi|83956173|ref|ZP_00964626.1| subunit S of type I restriction-modification system [Sulfitobacter sp. NAS-14.1] gi|83839559|gb|EAP78739.1| subunit S of type I restriction-modification system [Sulfitobacter sp. NAS-14.1] Length = 164 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG I+ R G+SQE L + + K E N ++ I+ L S+ Sbjct: 6 QVGLNIQKLRRERGISQEDLALMAKVNRGYMGKLENAKNSASLDMVERIATALNVVPSWL 65 >gi|34763122|ref|ZP_00144092.1| Transcriptional regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887220|gb|EAA24321.1| Transcriptional regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 94 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K IR RR L ++QE+ + G++F ++++E + L I+ Sbjct: 7 NIKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFEN-TGEISLFSLIKIA 65 Query: 64 EVLES 68 +L+ Sbjct: 66 IILDC 70 >gi|300788896|ref|YP_003769187.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299798410|gb|ADJ48785.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 77 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R +S+ +L E LG+ +Q + E+G I+E E + F Sbjct: 7 NRIAMLRAERSISRRQLAEALGVHYQTIGYLERGEYSPSLFLALRIAEFFEVSVEVLFST 66 Query: 77 SP 78 P Sbjct: 67 KP 68 >gi|323343170|ref|ZP_08083401.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463234|gb|EFY08429.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 127 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+IRL+R ++Q +L + + + Q V K+E G++ S L I E L + Sbjct: 7 KKIRLKRK---LTQRELAKRVNYSQQAVAKWEVGISNPDISNLVKICEELNISVECLLCQ 63 Query: 77 SPTVCSDISS 86 P + Sbjct: 64 KPKHMQEFDE 73 >gi|256111164|ref|ZP_05452200.1| hypothetical protein Bmelb3E_01001 [Brucella melitensis bv. 3 str. Ether] gi|265992675|ref|ZP_06105232.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262763545|gb|EEZ09577.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] Length = 182 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF + P + E +++ Sbjct: 59 GMAEFFALEPDAPHRVFYEAEELVEI 84 >gi|238063738|ref|ZP_04608447.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885549|gb|EEP74377.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 403 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFF 73 VG+R+ R+ M+Q++ + LG + V K E+GV R+ S L+ ++E L + Sbjct: 17 VGRRVAHWRVRRNMTQQQFADRLGKSKSWVDKVERGVRRLERVSNLREVAEALRIDLEML 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKI 119 P S+ + ++ + D +VR ++ Sbjct: 77 LADRPGPADPASAGVEGIRAALARYH----VVAPARPPDVAQVRARL 119 >gi|168206352|ref|ZP_02632357.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168210038|ref|ZP_02635663.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168214461|ref|ZP_02640086.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|168216835|ref|ZP_02642460.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|182627149|ref|ZP_02954863.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|170662199|gb|EDT14882.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170711833|gb|EDT24015.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170714083|gb|EDT26265.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|177907467|gb|EDT70136.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182381078|gb|EDT78557.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 433 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ ++L IT Q+ E G + L++I+ L + + + Sbjct: 6 LGEKIKRRRKELNMTLKELAGE-RITPGQISLVESGRSNPSMDLLEYIAITLNTSVEYLM 64 Query: 75 DVSPTVCSDI 84 + T I Sbjct: 65 ETEKTQAEKI 74 >gi|169347272|ref|ZP_02866211.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169296668|gb|EDS78799.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 433 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ ++L IT Q+ E G + L++I+ L + + + Sbjct: 6 LGEKIKRRRKELNMTLKELAGE-RITPGQISLVESGRSNPSMDLLEYIAITLNTSVEYLM 64 Query: 75 DVSPTVCSDI 84 + T I Sbjct: 65 ETEKTQAEKI 74 >gi|170289284|ref|YP_001739522.1| XRE family transcriptional regulator [Thermotoga sp. RQ2] gi|170176787|gb|ACB09839.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2] Length = 110 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G ++ R + ++Q+ L + LG++ V K E G + L I L Sbjct: 34 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 87 >gi|94990537|ref|YP_598637.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] gi|94544045|gb|ABF34093.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] Length = 232 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ G++Q +LG L + + +EKG N L + + +F Sbjct: 4 GHQLKTARLSRGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYF 61 >gi|329119145|ref|ZP_08247836.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464776|gb|EGF11070.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC BAA-1200] Length = 119 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 42/89 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +GK I R G++QE++ E L I + V + E+G+ RL ++E+ + Sbjct: 8 INKRIGKAIAKYRQERGLTQEQVAEILQIGNEAVSRMERGLIMPNVVRLVELAEIFQCTA 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 + S D + + + ++ ++ D Sbjct: 68 ADLLAESSPRLFDKTHKIHLLISDLAKTD 96 >gi|319760985|ref|YP_004124922.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317115546|gb|ADU98034.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 102 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I+L R +SQ L + GI+ + E+G S LQ I+ L P+ Sbjct: 1 MNIGQAIQLARSKRKLSQAALAKRAGISVSYLSLLERGRRDPPLSTLQRIAAALVMPVEI 60 Query: 73 FF 74 F Sbjct: 61 LF 62 >gi|307276550|ref|ZP_07557668.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506660|gb|EFM75812.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 418 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 9 NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N V+ + +G+ IR+ R G +Q L E +GI+ + K EKG ++ +L I + L+ Sbjct: 2 NQVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRQLSEEKLNLILDSLQ 61 Query: 68 ---SPIS 71 P++ Sbjct: 62 EAVIPVN 68 >gi|257437945|ref|ZP_05613700.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199605|gb|EEU97889.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 231 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 I+L R G++Q++ E LG++ + YEKG+ G + +++ + Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYL 61 >gi|255523840|ref|ZP_05390804.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255512402|gb|EET88678.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 190 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK+I+ R ++ ++L ++ + + E+G+ V L +I++ L+ +S+F Sbjct: 5 VGKKIKELRTNKNLTLKELSTKTNLSIGFLSQLERGLTAVAIDSLNNIAKALDVNLSYF 63 >gi|227484864|ref|ZP_03915180.1| helix-turn-helix domain protein [Anaerococcus lactolyticus ATCC 51172] gi|227237224|gb|EEI87239.1| helix-turn-helix domain protein [Anaerococcus lactolyticus ATCC 51172] Length = 115 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 3/111 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R LG+S EK GE +G+ + + E G N ++ I ++ + Sbjct: 4 RIKKIRKTLGLSGEKFGENIGLKRSSISQLETGTNNPTDQVIKSICLAYNVNENWLRTGN 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQKIIELVRSI 126 + + + + + L + +I + K RQ I + ++S+ Sbjct: 64 GEMFIETKDSFLDSISKQFNLEELDVKILESYIDLPPEK-RQVIKDYLKSL 113 >gi|255693490|ref|ZP_05417165.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|260620682|gb|EEX43553.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] Length = 181 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N+G +R +R + G SQE + +G++ + K E G + + +I + L+ Sbjct: 76 NIGTMLRKQRELKGFSQEYVAGLVGVSTSVISKIETGKTKARFDVISNICKALD 129 >gi|255305198|ref|ZP_05349370.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 121 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++L R L +Q++LGE L I+ + + YE L ++++ + + Sbjct: 3 GKRLKLLRKELNYTQKELGEKLNISGRIIGYYESEERFPDKEILSKLADLFNVSVDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ S+E + + D + R ++ ++K++++ + + E + Sbjct: 63 RTNIRNAEHSAELELIEKLNFSDDIKEALRMISEL-SPASQEKMMKIAKVFLEEEMDKK 120 >gi|218290714|ref|ZP_03494796.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239252|gb|EED06451.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 72 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + R+ G++QE++ G+ K E G + Q IS V+ P FF+ Sbjct: 6 LAKWRIEHGLTQEEMAARCGLKRVTYAKVEYGKT-ISVETAQKISRVVGVPWPQFFEDDC 64 Query: 79 TVCSDISS 86 + + Sbjct: 65 PLGGQEGA 72 >gi|254476881|ref|ZP_05090267.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] gi|214031124|gb|EEB71959.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] Length = 188 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S E + G++ V + E+G + + L +++ L+ + D Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLDS 73 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 + +++V + +G Sbjct: 74 NEAQDRIEVLRDSDVPSIENMGEG 97 >gi|169344519|ref|ZP_02865488.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] gi|169297439|gb|EDS79548.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] Length = 141 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R +SQE+L + L I+ Q + K E G L + ++ + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKLESGKAYPDIDNLILLRKIFGVSLD 59 >gi|149276668|ref|ZP_01882811.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39] gi|149232337|gb|EDM37713.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39] Length = 105 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P V IR R +QE + L I+ K E G +++ RL I+E Sbjct: 12 KQNPERRPKIVADNIRKIREFRNYTQEYIAMKLNISQNAYSKLELGYSKISIDRLFQIAE 71 Query: 65 VLESP 69 +LE Sbjct: 72 LLEVD 76 >gi|119871924|ref|YP_929931.1| XRE family transcriptional regulator [Pyrobaculum islandicum DSM 4184] gi|119673332|gb|ABL87588.1| transcriptional regulator, XRE family [Pyrobaculum islandicum DSM 4184] Length = 516 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G R+ R G+S +L G++ + + E + L I+ L P Sbjct: 5 LGNRLSELRRRKGLSLSRLARLAGVSKSTLWEIENDKISPSINTLWAIANALGVP 59 >gi|118464968|ref|YP_879634.1| XRE family transcriptional regulator [Mycobacterium avium 104] gi|118166255|gb|ABK67152.1| transcriptional regulator, XRE family protein [Mycobacterium avium 104] Length = 474 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 5/109 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + L ++E + P +F Sbjct: 7 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYFAP 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDD--VKVRQKIIE 121 S I+ + + +TP + +L I V + +++ + Sbjct: 67 DSDARL--IADLREVLAETPATPGQVEELVARMPAIGQTLVNLHRRLHD 113 >gi|301382068|ref|ZP_07230486.1| RstR1 [Pseudomonas syringae pv. tomato Max13] gi|302058949|ref|ZP_07250490.1| RstR1 [Pseudomonas syringae pv. tomato K40] gi|302130444|ref|ZP_07256434.1| RstR1 [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 203 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R ++Q++L + +GIT Q+ +YE G + L +++ L + ++ Sbjct: 42 KLISLRSAQNLTQQQLADAVGITPSQISRYESGQAKPRKIILLRLADALGVSST---ELL 98 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + E +D S L + F +D ++R Sbjct: 99 QSPVQRVVVGERRSIDPPSQLRERML-KEFSSMDSEEIR 136 >gi|300115617|ref|YP_003762191.1| XRE family transcriptional regulator [Nitrosococcus watsoni C-113] gi|299541559|gb|ADJ29870.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 76 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 VGK I+ R+ G++Q +L + I + K E+G N V L+ I++ L+ + Sbjct: 3 VGKNIKGLRIAAGLTQTQLAKKAHIDQSGLSKIERGENESVTLPMLRKIAKALDCSVVAL 62 Query: 74 FDVSP 78 + Sbjct: 63 LEDED 67 >gi|296533794|ref|ZP_06896337.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265880|gb|EFH11962.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 468 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 15/130 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R G++Q+ L LGI+ + E V A+ L + L+ Sbjct: 6 IGRTIRRLRQEQGLTQQALASRLGISASYLNLIEHDQRGVTAALLIKLGHTLQV------ 59 Query: 75 DVSPTVCSDISSEENNVMDFISTP-----DGL-QLNRYFIQIDDVKVRQKIIELVRSI-- 126 D++ + E+++ + ++ P + + R R ++ L R++ Sbjct: 60 DLAALSGREEQQLESSLREVLADPLLGLDETPEEEIRALAGSAPNAAR-AMLALYRALRV 118 Query: 127 VSSEKKYRTI 136 + + Sbjct: 119 AREDASGIAL 128 >gi|253580260|ref|ZP_04857526.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848353|gb|EES76317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 70 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I++ R M+Q+ L E +G++ Q + EKG + I VL+ + F Sbjct: 7 IKVARAEKDMTQKVLAEAVGVSRQTINAIEKGEYNPTIKLCRKICRVLDKSLDDLFWEDE 66 Query: 79 TVCS 82 + Sbjct: 67 EDEN 70 >gi|255280060|ref|ZP_05344615.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255269151|gb|EET62356.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 74 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KRIR R ++Q K+ E L I+ + +YE + + L I+++ I + + Sbjct: 5 KRIRDLREDSDITQTKMAEKLNISQRTYSRYENADSLMPLDILVQIADIHGVSIDYLLE 63 >gi|209883861|ref|YP_002287718.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209872057|gb|ACI91853.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 208 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 12/92 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R + + + L +G+T + K E G L +++ L + ++ Sbjct: 20 LGRRIRQLRKMQERTLDSLATEIGLTKGYLSKVETGRQTPPLGTLSKLAKALGTDLAGLV 79 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + P ++ DF +G+ + R Sbjct: 80 EHGPVEPAE--------QDF----EGVSVVRA 99 >gi|150402162|ref|YP_001329456.1| XRE family transcriptional regulator [Methanococcus maripaludis C7] gi|150033192|gb|ABR65305.1| transcriptional regulator, XRE family [Methanococcus maripaludis C7] Length = 66 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R M+QE+LG+ +G+ + + EKG IS+ L + I F Sbjct: 4 RIKEYRAKYDMTQEELGKLVGVRRETISFLEKGKYNPSLKLAHLISKALNATIDELF 60 >gi|126011086|ref|YP_001039911.1| putative immunity repressor protein [Streptococcus phage phi3396] gi|124389355|gb|ABN10797.1| putative immunity repressor protein [Streptococcus phage phi3396] Length = 112 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 21/56 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R LG++Q + + YE + +++ I+ ++ Sbjct: 4 RIKYLRQALGLTQSAFAAKAHVNKNMIANYESQNSNPSLKQIEKIALAFNVEPAWL 59 >gi|119484521|ref|ZP_01619138.1| hypothetical protein L8106_02347 [Lyngbya sp. PCC 8106] gi|119457995|gb|EAW39118.1| hypothetical protein L8106_02347 [Lyngbya sp. PCC 8106] Length = 92 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I R LG+SQEKL LG++FQ V ++E+G + LQ I + L Sbjct: 16 ILTLRKRLGLSQEKLATQLGVSFQTVNRWERGRTQPSHLALQAIKQKL 63 >gi|157370471|ref|YP_001478460.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157322235|gb|ABV41332.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 187 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ + +R R G S + E G++ + + E+G + + L I+ S F Sbjct: 7 HLAQTLRSLRSQRGWSLAQAAENTGVSKAMLGQIERGESSPTVATLWKIATGFNVAFSAF 66 Query: 74 FDVSPTVCSDISS 86 ++SP Sbjct: 67 LEISPLQQQATLH 79 >gi|256544578|ref|ZP_05471950.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] gi|256399467|gb|EEU13072.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] Length = 132 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFFD 75 ++R R ++QE+L + +G++ + + +YE G ++ ++ ++EVL++ + Sbjct: 5 SKLRKLRENKNLTQEELAKLVGVSLKTISRYEMGESKPRYRKIYDKLAEVLDTSHDYLVT 64 Query: 76 VSPTVCSDISSE 87 D+ + Sbjct: 65 DEENFILDVREK 76 >gi|228950524|ref|ZP_04112674.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809160|gb|EEM55631.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 114 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I G+ ++ R ++Q +L E L ++ Q++ +E G + L I+ + Sbjct: 2 IIFGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLD 60 >gi|229003088|ref|ZP_04160940.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4] gi|228758171|gb|EEM07364.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4] Length = 67 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRTPSQDFVVEVAKTLNISID 62 >gi|225378702|ref|ZP_03755923.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans DSM 16841] gi|225209539|gb|EEG91893.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans DSM 16841] Length = 69 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 24/67 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R +SQ +L + +G T Q + E G I+ I FD Sbjct: 3 NRIKELRKANKLSQGELADIVGTTRQTITSIEVGKYTASLGLAYKIAHYFNLTIEEVFDF 62 Query: 77 SPTVCSD 83 S + Sbjct: 63 SDLESEE 69 >gi|222100228|ref|YP_002534796.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359] gi|221572618|gb|ACM23430.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359] Length = 113 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G ++ R + ++Q+ L + LG++ V K E G + L I L Sbjct: 37 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 90 >gi|222096786|ref|YP_002530843.1| transcriptional regulator [Bacillus cereus Q1] gi|221240844|gb|ACM13554.1| transcriptional regulator [Bacillus cereus Q1] Length = 374 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|218235252|ref|YP_002368031.1| DNA-binding protein [Bacillus cereus B4264] gi|218163209|gb|ACK63201.1| DNA-binding protein [Bacillus cereus B4264] Length = 374 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNVSID 62 >gi|148642389|ref|YP_001272902.1| xenobiotic response element family DNA binding protein [Methanobrevibacter smithii ATCC 35061] gi|222444408|ref|ZP_03606923.1| hypothetical protein METSMIALI_00019 [Methanobrevibacter smithii DSM 2375] gi|148551406|gb|ABQ86534.1| DNA binding protein (regulator), xenobiotic response element family [Methanobrevibacter smithii ATCC 35061] gi|222433973|gb|EEE41138.1| hypothetical protein METSMIALI_00019 [Methanobrevibacter smithii DSM 2375] Length = 186 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + N+G R++ R + ++ + E L I ++YE G + AS L I+ + Sbjct: 5 NEYNKNIGNRVKELRELSDITIQDFAEELDIDETMYKQYENGEVDIPASFLCEIANKFQV 64 Query: 69 PISFFFDVSPTVCS 82 + T + Sbjct: 65 DLGLLLTGEETRMN 78 >gi|39998387|ref|NP_954338.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39985333|gb|AAR36688.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298507328|gb|ADI86051.1| transcriptional regulator with cupin-like beta-barrel domain, putative [Geobacter sulfurreducens KN400] Length = 187 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G +I+ R+ ++ + + G + + + E + L I++ + IS F Sbjct: 5 NIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLF 64 Query: 74 FDVSPTV 80 F Sbjct: 65 FSEDEEE 71 >gi|15789706|ref|NP_279530.1| hypothetical protein VNG0471C [Halobacterium sp. NRC-1] gi|169235420|ref|YP_001688620.1| transcription regulator-like protein [Halobacterium salinarum R1] gi|10580078|gb|AAG19010.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167726486|emb|CAP13271.1| transcription regulator homolog [Halobacterium salinarum R1] Length = 66 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R RR +SQ L +G+T Q + E+ +++ + I FD Sbjct: 5 VRERRGEADLSQADLAAAVGVTRQTINAIERDRYDPSIELAFKLADFFDCRIEDLFD 61 >gi|229170554|ref|ZP_04298202.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621] gi|228612903|gb|EEK70080.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621] Length = 69 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R G +QE+L + +G++ Q + EK I+ + E I+ FD Sbjct: 7 NKIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANIFEKSITDVFDY 66 Query: 77 SPT 79 Sbjct: 67 QEE 69 >gi|300768444|ref|ZP_07078344.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493962|gb|EFK29130.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 68 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R LG +Q KL + G++ V E A L +++ + + Sbjct: 2 IGSEIKKIRSKLGWTQAKLADAAGVSQSTVNTLENRTKHPDAVTLNLLAKAMGVTVDDLL 61 Query: 75 D 75 + Sbjct: 62 E 62 >gi|167761064|ref|ZP_02433191.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC 35704] gi|167661298|gb|EDS05428.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC 35704] Length = 71 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K++++ R+ L MSQE L + +T Q + E G I +VL + F Sbjct: 4 KKMKMARLSLDMSQEMLAAKVDVTRQTIGMIEAGKFNPSLKLCIAICKVLHVTLDDLF 61 >gi|94990047|ref|YP_598147.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] gi|94543555|gb|ABF33603.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] Length = 249 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDVS 77 ++ R+ ++ E+L E LG T + K+EKG ++ I++ P F + Sbjct: 11 VKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMMFGDN 70 Query: 78 PTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 PT + + + + ST L+ +R QI +++ +++ +K+ + Sbjct: 71 PTSINPQVELIPSTLQKINSTSSQLEHSR---QI-------IVLDTAETLLEQQKEIKNN 120 Query: 137 EE 138 E+ Sbjct: 121 ED 122 >gi|94988166|ref|YP_596267.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94993958|ref|YP_602056.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] gi|94541674|gb|ABF31723.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94547466|gb|ABF37512.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] Length = 249 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDVS 77 ++ R+ ++ E+L E LG T + K+EKG ++ I++ P F + Sbjct: 11 VKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMMFGDN 70 Query: 78 PTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 PT + + + + ST L+ +R QI +++ +++ +K+ + Sbjct: 71 PTSINPQVELIPSTLQKINSTSSQLEHSR---QI-------IVLDTAETLLEQQKEIKNN 120 Query: 137 EE 138 E+ Sbjct: 121 ED 122 >gi|194467588|ref|ZP_03073575.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454624|gb|EDX43521.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 122 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEV 65 + N VD +G+ IR R + G++QEKL E ++ + + E K + RL+ I++ Sbjct: 1 MANNVD--IGENIRRYRKLRGLTQEKLAEFSDLSVKFISMVESKKSQNISIQRLEKIADA 58 Query: 66 LESPIS 71 L+ ++ Sbjct: 59 LDISLA 64 >gi|77462165|ref|YP_351669.1| putative DNA-binding protein [Rhodobacter sphaeroides 2.4.1] gi|77386583|gb|ABA77768.1| Putative DNA-binding protein [Rhodobacter sphaeroides 2.4.1] Length = 352 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RL R + G++Q+K E LG+ + E + V ++ S P FF Sbjct: 2 LRLARHLRGLTQKKTAEQLGVAQAVYSRMENDLVEVDDECIRVASRAFNLPPGFF 56 >gi|67459679|ref|YP_247303.1| Phage-related transcriptional regulator [Rickettsia felis URRWXCal2] gi|67005212|gb|AAY62138.1| Phage-related transcriptional regulator [Rickettsia felis URRWXCal2] Length = 119 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I++ R G+SQE+L +G T Q + EKG+ + L+ +S VL + Sbjct: 65 IKVYREYRGLSQEQLAIKIGKTKQYISFIEKGLRKGTIDTLKKLSTVLNVDLD 117 >gi|78224628|ref|YP_386375.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195883|gb|ABB33650.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 198 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R ++ ++L E G++ + + E + L IS+ L+ I +FF Sbjct: 15 LGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHYFF 74 Query: 75 DVSPTV 80 + Sbjct: 75 EEEEDQ 80 >gi|70727667|ref|YP_254583.1| hypothetical protein SH2668 [Staphylococcus haemolyticus JCSC1435] gi|68448393|dbj|BAE05977.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 190 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R SQE L E L ++ Q + +E + L + + + Sbjct: 1 MEIGQQIRKYREKEKYSQEYLAEKLYVSRQTISNWENERSYPDIHNLLMMCTLFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|73748675|ref|YP_307914.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|147669434|ref|YP_001214252.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432701|ref|YP_003462574.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660391|emb|CAI82998.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|146270382|gb|ABQ17374.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288946421|gb|ADC74118.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 214 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 5/92 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +++G++IR R G + E LG G++ Q ++K EKG + + + +S + Sbjct: 2 MSIGEKIREFRKARGWTPEYLGTRSGLSGQYIRKLEKGERQSITLATANKLSNAFGIEPA 61 Query: 72 FFF----DVSPTVCSDISSEENNVMDFISTPD 99 + SP DI +E ++ + T + Sbjct: 62 KLISENDNSSPRQIEDILAEVRSIFKRLETVE 93 >gi|332653867|ref|ZP_08419611.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516953|gb|EGJ46558.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 87 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 24/92 (26%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR---LQHISEVLESPISFFFD 75 ++ R G+SQ +L + GI Q +Q+YE+G + ++ L I LE Sbjct: 14 LQKLRKAAGLSQSQLADLAGIKVQVLQQYERGARDINGAKLPTLLKICNALEC------- 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + D I+ + L+L + + Sbjct: 67 --------------RLADIITDEETLELLKKY 84 >gi|317054764|ref|YP_004103231.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447033|gb|ADU20597.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 198 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 10/94 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K I+ R G SQE L E ++ Q + +E N L +S++ + Sbjct: 1 MELSKTIKRLRTEKGWSQETLAEKSYVSRQTISNWENEKNYPDVHSLLILSDLFGVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + I D L R Sbjct: 61 LIKGDVETMKNT----------IHNKDAYALKRA 84 >gi|301164403|emb|CBW23961.1| putative DNa-binding protein [Bacteroides fragilis 638R] Length = 140 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G+ ++ R + G +QE++ + + I YE G + + L+ IS + Sbjct: 27 VNQIIGENLKKIRELSGFTQEQVAQSIKIERSTYSNYEGGTREIPYTILEDISNLFGCEP 86 Query: 71 SFFFDVSPTVCSDI 84 F+ + ++I Sbjct: 87 FILFEDNIQTNNEI 100 >gi|325680396|ref|ZP_08159949.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107919|gb|EGC02182.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 76 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNR-VGASRLQHISEVLES 68 ++G +I R + G++QE+L E + + E VNR V L I++ L Sbjct: 10 KHIGLKISYYRKLRGLTQEQLAEMIDKNLAFIGAVEAPNVNRTVSLDTLFDIADALNV 67 >gi|269838163|ref|YP_003320391.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787426|gb|ACZ39569.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR R GM+ + L GI+ + + E+ + L I+EVL I F Sbjct: 9 IGPAIRRLRQERGMTLDALAAQAGISASHLSRLERSQTLPSFTVLAKIAEVLGVGIDEF 67 >gi|258515643|ref|YP_003191865.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779348|gb|ACV63242.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 73 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G RIR R G++ + + LG++ E+G ++ A R++ I+++LE I F Sbjct: 8 GNRIRKIRKAKGITSCYVAKKLGMSPGGYSDIERGRRKLSAERVEKIAKILEIDIGEIF 66 >gi|228959512|ref|ZP_04121199.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800192|gb|EEM47122.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 373 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKTIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISID 62 >gi|229117990|ref|ZP_04247350.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228665439|gb|EEL20921.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] Length = 190 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|73663694|ref|YP_302475.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496209|dbj|BAE19530.1| putative truncated transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 187 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 4/100 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K I+ R+ LGM+QE L E L T + K+E + + L ++++ + Sbjct: 2 IQISKTIKKERLRLGMTQEALSEYLNTTKTTISKWESEILYPDITMLPKLAKLFNISVDD 61 Query: 73 FFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFI 108 + S + + IS + +++ S + L R + Sbjct: 62 LLNYSIAMTDEEIKKISISLSKMVNHTSYSEYLFSVRDYY 101 >gi|284097788|ref|ZP_06385777.1| lambda repressor [Candidatus Poribacteria sp. WGA-A3] gi|283830688|gb|EFC34809.1| lambda repressor [Candidatus Poribacteria sp. WGA-A3] Length = 128 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 3/114 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFD 75 +RI+ R G+SQ + + L I+ V ++E+G ++ + ++ +L + Sbjct: 6 ERIQTARKQAGLSQADVAKALRISASAVNQWEQGFSKNIKLEHFFALASLLRQDPQWLAT 65 Query: 76 VSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + + D T + L Q+ ++R+ ++ +R + Sbjct: 66 GTVFPYVRHTQATPPKLDDPPLTSEEKALLHQVRQMPS-RLRKVLLRFLRGLSD 118 >gi|169349492|ref|ZP_02866430.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM 1552] gi|169293567|gb|EDS75700.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM 1552] Length = 77 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRIR R ++Q+ L L ++ + +YE+G + L I+ ++ + + + Sbjct: 5 KRIRDLREDKDLTQKDLANYLNVSQKSYSRYERGERTIAPEILSKIATFHDTTVDYLLNR 64 Query: 77 SPTVCS 82 + + Sbjct: 65 TDDKTN 70 >gi|167621833|ref|YP_001676618.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167351574|gb|ABZ74304.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 1330 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 26/126 (20%) Query: 7 IPNPVDINVGKRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P P +G I +R M Q L + LG+ Q V ++E G +R G +L ++ V Sbjct: 2 KPIPTYRELGLLIAQQRFKQKMPKQADLADRLGVKQQSVSRWEAGTHRPGVDQLPALATV 61 Query: 66 L--------------ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 L + P+S + P D + E V F + Sbjct: 62 LGEDLSELRRLARYDDLPVSPILEPFPIDRLDPVTFEAFVAYF---------AKALY--P 110 Query: 112 DVKVRQ 117 D VR+ Sbjct: 111 DDDVRR 116 >gi|160914483|ref|ZP_02076698.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991] gi|158433641|gb|EDP11930.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991] Length = 251 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R M Q++LG+ L ++ + + K+E G++ L ++E+L+ ++ Sbjct: 9 IGHFISEMRKAKNMKQKELGDQLFVSDKTISKWENGISMPNIVLLAPLAELLDISVNELL 68 Query: 75 DVSPTVCSDISSEENNVM 92 ++ + Sbjct: 69 KGEKLTQESVAKTREEAL 86 >gi|52142223|ref|YP_084606.1| DNA-binding protein; transcriptional regulator [Bacillus cereus E33L] gi|51975692|gb|AAU17242.1| DNA-binding protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 374 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|10957144|ref|NP_047318.1| hypothetical protein pMRC01_034 [Lactococcus lactis] gi|3582214|gb|AAC56010.1| conserved hypothetical protein [Lactococcus lactis] Length = 79 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + R++ +SQ+ L + +G++ Q + EKG I+ + I+ F Sbjct: 9 ISNSVYKYRVLSRLSQQDLADKVGVSKQTIFVMEKGNYTPSLLLALRIANFFDVEITKIF 68 Query: 75 DVSPT 79 P Sbjct: 69 TYEPG 73 >gi|17545878|ref|NP_519280.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428173|emb|CAD14861.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 182 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G + E L E G+T + K E+G++ + ++ L P F Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLF-GE 62 Query: 78 PTVCSDIS 85 P S I+ Sbjct: 63 PAAASAIT 70 >gi|329577286|gb|EGG58747.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 377 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K++ R+ G++ ++L E G++ Q + YE G A L + VL P SFF Sbjct: 10 KQLTSARISRGLTMKELAEKSGLSRQMISNYESGKTIQKAESLLKLLSVLNFPRSFF 66 >gi|320638697|gb|EFX08362.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. G5101] Length = 230 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + L +I+ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQALSNIARSLGVDIA 60 Query: 72 FFF 74 F Sbjct: 61 DLF 63 >gi|310659749|ref|YP_003937470.1| hypothetical protein CLOST_2450 [Clostridium sticklandii DSM 519] gi|308826527|emb|CBH22565.1| conserved protein of unknown function [Clostridium sticklandii] Length = 199 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I R G++Q+++ + L I+ + V K+E G+ + +SEVL + I Sbjct: 6 VGQLILKLRNEKGLTQKQVADSLNISNKTVSKWECGMGCPDVTLWTELSEVLGADILKLL 65 Query: 75 DVS 77 + Sbjct: 66 EGE 68 >gi|307131678|ref|YP_003883694.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] gi|306529207|gb|ADM99137.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] Length = 81 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V K P +G+ IR RR LG+SQE L GI + + E+G V L Sbjct: 4 VSGKNDPAHALPLLGQTIRQRREFLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLR 63 Query: 62 ISEVLE 67 I++ LE Sbjct: 64 IADALE 69 >gi|303246535|ref|ZP_07332814.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492245|gb|EFL52120.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 186 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + G + E+L E G++ QV YE G + S L +++ ++ Sbjct: 9 REIAMRLRGIREVTGFTMEQLAEATGVSADQVLLYETGEEEIPVSYLYEVAKAAGVDLTA 68 Query: 73 FFDVSPT 79 Sbjct: 69 LLTGGEA 75 >gi|292486897|ref|YP_003529767.1| putative transcriptional regulator [Erwinia amylovora CFBP1430] gi|292900708|ref|YP_003540077.1| DNA-binding protein [Erwinia amylovora ATCC 49946] gi|291200556|emb|CBJ47685.1| putative DNA-binding protein [Erwinia amylovora ATCC 49946] gi|291552314|emb|CBA19353.1| putative transcriptional regulator [Erwinia amylovora CFBP1430] gi|312170967|emb|CBX79226.1| putative transcriptional regulator [Erwinia amylovora ATCC BAA-2158] Length = 85 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G+SQ+KLG GI ++ +YE+G++ + ++ VL+ P + Sbjct: 5 RLKEARLKKGLSQQKLGVLAGIDEATASARMNQYERGIHVPDFELVCRLAAVLDVPSCYL 64 Query: 74 FDVSPTVCS 82 + + + + Sbjct: 65 YTLEDDLAA 73 >gi|229137167|ref|ZP_04265786.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] gi|228646339|gb|EEL02554.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] Length = 70 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R ++QE+L + LG + + E G ++ A ++ ++E L I F Sbjct: 2 RIRHIRKAKKITQEELAKNLGFSGSSAISYIENGQRKLNADKIPKLAECLGVTIEEIF 59 >gi|226308038|ref|YP_002767998.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187155|dbj|BAH35259.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 195 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 9/107 (8%) Query: 4 NKKIPNPVDI---NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 N P+ +D +G R++ R ++ L E GI+ + + E G R L Sbjct: 2 NVNGPH-IDAAISQIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLL 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN-----VMDFISTPDGLQ 102 I+ + P+ I S + V+ P GLQ Sbjct: 61 PIALAHQVPLDQLVAAPQVADPRIQSAPRSVSGRTVLPLTRQPGGLQ 107 >gi|168487127|ref|ZP_02711635.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] gi|183569965|gb|EDT90493.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] Length = 303 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|156934250|ref|YP_001438166.1| DNA-binding transcriptional repressor PuuR [Cronobacter sakazakii ATCC BAA-894] gi|156532504|gb|ABU77330.1| hypothetical protein ESA_02080 [Cronobacter sakazakii ATCC BAA-894] Length = 185 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKR+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|148557504|ref|YP_001265086.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502694|gb|ABQ70948.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 252 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R+ G+S +L G+ F + K E G + RL +++ L I F Sbjct: 40 GPALRAARLDKGLSLRELAARTGLPFSTLSKLENGKMGMTYDRLVLLAQALGVEIGKLFS 99 Query: 76 VSPTVCSDISS 86 + + Sbjct: 100 TAAPDEPARGA 110 >gi|146313164|ref|YP_001178238.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145320040|gb|ABP62187.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 200 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + V + V RIR R +S ++L ++ + + EKG + L Sbjct: 8 MTESGADIAQVSLAVASRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE 87 ++ L ++ +VS + E Sbjct: 68 KLAAALGVSVADIVNVSSEPLVHVIEE 94 >gi|110800946|ref|YP_695377.1| Cro/CI family transcriptional regulator [Clostridium perfringens ATCC 13124] gi|110675593|gb|ABG84580.1| transcriptional regulator, Cro/CI family [Clostridium perfringens ATCC 13124] Length = 167 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 RI+ RR+ L +S + L ++ +Q+YE G + + +L I+ L+ + Sbjct: 15 NRIQSRRLELKLSYQDLASKTNMSKSTLQRYETGSIKNMPVDKLGVIAAALDVSPIWLLG 74 Query: 76 VSPTVCSDISSEENN 90 + + + ++ Sbjct: 75 LDEVGENSNNLSKDE 89 >gi|153822286|ref|ZP_01974953.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae B33] gi|16197752|gb|AAK95990.1| unknown [Vibrio cholerae O1 biovar El Tor] gi|126520182|gb|EAZ77405.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae B33] gi|223972392|dbj|BAH23423.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae O1 biovar El tor] gi|259156102|gb|ACV96050.1| membrane associated protein containing xre-family DNA-binding HTH domain [Providencia alcalifaciens Ban1] gi|259156265|gb|ACV96212.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae Ban5] gi|259156445|gb|ACV96390.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae Ind5] Length = 136 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R SQE+L G++ + +Q+ E G N+ L+ ++ V E IS + Sbjct: 2 IKKLRERKNWSQEQLATMSGLSVRTIQRIESG-NKASIESLKSLASVFEVDISKLLEEIT 60 Query: 79 TVCSD 83 + D Sbjct: 61 VIDKD 65 >gi|329116195|ref|ZP_08244912.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906600|gb|EGE53514.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 128 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 12/104 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 +++ R SQ++L E L I+ Q + K+E+G ++++ I EV F Sbjct: 7 QQLVKLRKEKHFSQDELAEKLFISRQAISKWERGEVTPDLAKIEQIGEVFGVTTEFLLFG 66 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDG-----LQLNRYFIQI 110 F+ + V S E N+ D + L L R + + Sbjct: 67 KNFEDTWGVESFKYEEFQNIAD--EKKEERFDKLLDLFRSYWWL 108 >gi|332161374|ref|YP_004297951.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665604|gb|ADZ42248.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859495|emb|CBX69838.1| hypothetical protein YEW_DX16660 [Yersinia enterocolitica W22703] Length = 160 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R SQE+L E + + +Q+ E G L I+ V+E +S + Sbjct: 5 RIRELRQARAWSQEQLAELCSLNVRTIQRIENGEQ-ASLETLSAIAAVMELKVSELYSPD 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + S E + + + ++ F++ ++ + +I Sbjct: 64 SSQPPETSGEAVD-QRVVDAREAVENEMSFLR----RLLRAVI 101 >gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314942330|ref|ZP_07849178.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951464|ref|ZP_07854514.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314993125|ref|ZP_07858511.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996008|ref|ZP_07861086.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313589762|gb|EFR68607.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313592365|gb|EFR71210.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596421|gb|EFR75266.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598947|gb|EFR77792.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642303|gb|EFS06883.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 95 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ +L + + +T Q V ++ G +++ +SE+L P++ F Sbjct: 29 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 86 >gi|302129811|ref|ZP_07255801.1| putative phage repressor [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 259 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +RI+L R ++Q +L E +GI + + E G + +S L I++ + Sbjct: 1 MNLSERIKLARKEAHLTQSELAEKVGIAQTAISQLESGKT-LRSSYLLQIAQECGVNSLW 59 Query: 73 F--FDVSPTVCSDISSEENNVMDFISTPD---GLQLNRYFIQIDDVKVRQKIIEL 122 + D ++ + + + LN VR++I L Sbjct: 60 LQTGEGDIHTLEDPKDLWAAALEELVSGEHEDDAPLNNA--------VRKRIEAL 106 >gi|284036062|ref|YP_003385992.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283815355|gb|ADB37193.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 141 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 14/130 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++IRL+R+ G+SQE + + L ++ E+G + SRL I+ VL Sbjct: 11 EKIRLQRLQRGLSQENMADLLNLSTTAYGDIERGKTDLTLSRLSQIANVLAISPLALLTD 70 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR------------QKIIELVR 124 + + V + L+L Q++ K+R + +E++R Sbjct: 71 EAIPAQVVEEKSEEVAS--HELETLRLVVEKQQLELDKLRLEADYWKRKYDDRIAMEVLR 128 Query: 125 SIVSSEKKYR 134 S+ +K+ R Sbjct: 129 SMGVEQKRER 138 >gi|220905587|ref|YP_002480899.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869886|gb|ACL50221.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 189 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 25/67 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G RIR R + E L + G+ +QK E LQ ++ L Sbjct: 2 PAARTIGSRIRAFREEREVDLETLAQNTGLDQCYLQKLESDTIYPSIGPLQKVARALGVR 61 Query: 70 ISFFFDV 76 + F D Sbjct: 62 LGTFLDD 68 >gi|154504949|ref|ZP_02041687.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] gi|153794832|gb|EDN77252.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] Length = 248 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G +Q++L E L ++ + + K+E+G++ + L+ ++++L ++ + Sbjct: 13 GGFVAALRKEKGYTQKELAEKLFLSNKAISKWERGLSLPDIALLEPLADILGVTVA---E 69 Query: 76 VSPTVCSDISSEENNVMDFIS 96 + + E + + + Sbjct: 70 LLKGERIHAALEPQEMDELLG 90 >gi|66043508|ref|YP_233349.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63254215|gb|AAY35311.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 199 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 12/113 (10%) Query: 1 MVGNKKIPNP----VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M P+ + ++VG+R++ R + G+SQ +L + G+T + EK Sbjct: 2 MAFTSTRPDKTWGNIALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSI 61 Query: 57 SRLQHISEVL-ESPISF--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S L+ +VL P+S FF + P + + + + ++D ++L Sbjct: 62 SSLR---KVLGGIPMSMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLV 111 >gi|313667112|gb|ADR73004.1| C.BspHIP [Bacillus sp. H(2010)] Length = 71 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G +I++ R G+SQE L + IT + + E G +++ ISE L + Sbjct: 9 LGSKIKILRKSRGVSQEDLAKQSEITRTYLTQIENGKVNPSIGKIKKISENLNISL 64 >gi|313887816|ref|ZP_07821496.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846159|gb|EFR33540.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 70 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ + +I R LG+SQ KL + +G+ + + YE I +VL I Sbjct: 5 NVVIENKIAEYRKELGLSQHKLAKAVGLKRRSIMAYENNTISPTLETAYKICKVLGKDIK 64 Query: 72 FFF 74 F Sbjct: 65 EVF 67 >gi|261820696|ref|YP_003258802.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604709|gb|ACX87195.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 96 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I+L R G+SQ L + + E S L I+ L+ P+S Sbjct: 1 MNIGQAIKLCRTRRGISQTDLANKAECSVSYLSMLENNKRDPTLSTLTKIATALKLPVSI 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F ++ ++ + T L+L Sbjct: 61 IFFIAAETGDLNGMDKGLQGELART--ALELL 90 >gi|256397327|ref|YP_003118891.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363553|gb|ACU77050.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 165 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 20/129 (15%) Query: 8 PNPVDIN----VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 PNP+ +G+ IR +R S +L + G++ + + E+G+ + A LQ ++ Sbjct: 3 PNPLGALPIGPLGEYIREQRRNAEYSVRQLAQAAGVSNPYLSQIERGLRKPSAEILQQLA 62 Query: 64 EVLESPISFFF------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + L + D V D +++ + V ++ L + + ++ Sbjct: 63 KALRISAETLYVRAGLLDGGADVDEDAATDGHGVRSAVADDPWL----------NARQKR 112 Query: 118 KIIELVRSI 126 ++++ + Sbjct: 113 ALLDIYEAF 121 >gi|255533832|ref|YP_003094204.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346816|gb|ACU06142.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 113 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 15/113 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I+ R G SQ ++ E L I+ K E G+ + RL I+ +LE+ I Sbjct: 4 ISKNIKRFRQKKGWSQREVAEQLNISIPAFSKIENGITDINLKRLGQIATLLEASIMDLM 63 Query: 75 DVSPTVCSDISSEENNVMDF-ISTP--DGLQLNRYFIQIDDVKVRQKIIELVR 124 S N++ ++ + + L ++++IEL Sbjct: 64 ATDGENPQSKHSMHVNMLKIKLAKKEEEVIDL------------QRRVIELYE 104 >gi|256823032|ref|YP_003146995.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796571|gb|ACV27227.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 70 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR+ R MSQ +L E +G++ + + E G I+E + P+ F Sbjct: 7 NRIRVFRAEHRMSQGELAEAIGVSRKTISTIEVGKFVPSTIIALKIAEYFKVPVEEVF 64 >gi|261368648|ref|ZP_05981531.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569235|gb|EFB74770.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 232 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + L R G++Q++ + LGI+ Q+ YEKG+ G + + +++ + S Sbjct: 9 LTLLRKERGITQKQAAQDLGISQAQLSHYEKGIRECGLAFVVQVADYYGVSCDYLLGRSA 68 Query: 79 TVCSDISSEENNVMDFISTPDGL 101 E+ +T + Sbjct: 69 ERSGQTIRVEDLPDANAATSGSV 91 >gi|222109211|ref|YP_002551476.1| hypothetical protein Avi_9645 [Agrobacterium vitis S4] gi|221738485|gb|ACM39350.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 163 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVS 77 +R R G+++ + LG++ +YE+ +++ +RL H+ E+L SP+ ++ + Sbjct: 52 LRKMREQAGLTRAEFAPLLGLSVPVYSRYERAFSKIHVTRLLHVCELLGLSPVEMLYEAA 111 Query: 78 PTVCSDISSEENNVMDFIS 96 P + E + ++ Sbjct: 112 PHLWGSTDEEAEDRFRLVA 130 >gi|182684266|ref|YP_001836013.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|221232045|ref|YP_002511197.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|182629600|gb|ACB90548.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|220674505|emb|CAR69066.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|104774634|ref|YP_619614.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423715|emb|CAI98696.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 119 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK +R R GMSQ++L LG++ Q + +E G + I+ + Sbjct: 6 IGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60 >gi|52841492|ref|YP_095291.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628603|gb|AAU27344.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 246 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ RM ++ + L E + ++ YE+G G ++ ++ LE SF Sbjct: 27 IGLRIKQERMSKKLTMKALAELTDNLNISRINNYERGERTPGPEEIKQLARALEVSPSFL 86 Query: 74 FDVSPTVCSDISSE 87 +S + Sbjct: 87 MCLSDDRQGSFKTP 100 >gi|28210370|ref|NP_781314.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28202807|gb|AAO35251.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 343 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 46/98 (46%), Gaps = 10/98 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF---- 74 IR R ++QE++ L I+ V K+E G++ + L ++ VL+ ++ Sbjct: 7 IRNYRKKENLTQEQVANYLNISAPAVNKWENGISYPDITLLAPLARVLKIDVNTLLAFNE 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +++ ++ + E + ++ + DG + + F + D Sbjct: 67 ELTDAEVNNFTKEISEII----SKDGYE--KAFKKGSD 98 >gi|150018771|ref|YP_001311025.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905236|gb|ABR36069.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 117 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++L R ++Q+KL E +G++ + E L ++ L + + + Sbjct: 2 LGDKVKLLRKERKITQQKLAEAIGVSQSTIGMIEGNRQGASNDTLIKLANTLNTTVDYLL 61 Query: 75 DVSPTVCS 82 + Sbjct: 62 SDNIEELD 69 >gi|269976760|ref|ZP_06183735.1| transcriptional regulator [Mobiluncus mulieris 28-1] gi|306818115|ref|ZP_07451846.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|269934957|gb|EEZ91516.1| transcriptional regulator [Mobiluncus mulieris 28-1] gi|304649079|gb|EFM46373.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] Length = 65 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 22/58 (37%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 R G SQEKL E LG++ Q V EKG I++ I F Sbjct: 8 LRKQAGWSQEKLAELLGVSRQTVISIEKGRFDPSLPLAFTIAKTFNCKIEDIFTPDDA 65 >gi|317048764|ref|YP_004116412.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316950381|gb|ADU69856.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 185 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 >gi|225867621|ref|YP_002743569.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225700897|emb|CAW97557.1| putative DNA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 120 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ +SQ+ L E L I+ Q + K+E G L ++ VLE + Sbjct: 6 EQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLDELVTG 65 Query: 77 SPTVCSDISSEEN--NVMDFIS 96 I E NV +F++ Sbjct: 66 KEPAIKVIKKTEKPMNVWEFLT 87 >gi|225375839|ref|ZP_03753060.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans DSM 16841] gi|225212274|gb|EEG94628.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans DSM 16841] Length = 142 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 22/129 (17%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R + +Q+ + E LG+ Q YE G A ++ + + + Sbjct: 8 QKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNISVDDLLHL 67 Query: 77 ----------SPTVCSDISSEENNVMDFISTPD-----------GLQLNRYFIQIDDVKV 115 + S++ + ++F + P +L YF +I D Sbjct: 68 TIDIDREESYDAPAPTQASTDLSEFLEFFNDPSNKKKYMFNTNLERELLFYFDKISDED- 126 Query: 116 RQKIIELVR 124 +++IIE + Sbjct: 127 KKEIIEFTK 135 >gi|149007465|ref|ZP_01831108.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|168484288|ref|ZP_02709240.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|168492034|ref|ZP_02716177.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|147761037|gb|EDK68006.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|172042463|gb|EDT50509.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|183573657|gb|EDT94185.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|332071967|gb|EGI82455.1| transcriptional activator [Streptococcus pneumoniae GA17545] gi|332199415|gb|EGJ13492.1| transcriptional activator [Streptococcus pneumoniae GA47368] Length = 303 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|42784215|ref|NP_981462.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42740146|gb|AAS44070.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 79 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFF 74 F Sbjct: 66 EIF 68 >gi|25011386|ref|NP_735781.1| hypothetical protein gbs1344 [Streptococcus agalactiae NEM316] gi|24412924|emb|CAD47003.1| unknown [Streptococcus agalactiae NEM316] Length = 158 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 2 IGDNIKSLRRTHDLTQPEFAKIIGISRNSLSRYENGTSSVSTELIDRICQKFNVS 56 >gi|125972885|ref|YP_001036795.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256006006|ref|ZP_05430945.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417085|ref|ZP_06248105.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713110|gb|ABN51602.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] gi|255990029|gb|EEU00172.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408487|gb|EFB38745.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940876|gb|ADU74910.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 231 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R +SQ+ + + LGIT Q V YE L+ +++ + I + Sbjct: 7 LKQLREEKRLSQKDIADYLGITRQAVASYELAKREPDYEVLKKLADYFDVSIDYL 61 >gi|326331111|ref|ZP_08197409.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325951152|gb|EGD43194.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 181 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G R+R R GM+ +L E ++ + + E+G+ R S L I++ L + Sbjct: 4 LGSRVRELRKAQGMTLVQLAEATDLSHPFLSQIERGMARPSMSSLFRIAQTLGT 57 >gi|323481312|gb|ADX80751.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 306 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G ++ R ++Q+KL E GI+ + KYE G + + +S+ L Sbjct: 10 GNILKSLRKEQKLTQKKLSELTGISQSALVKYENGTRGISKNVDIALSKALNVD 63 Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 10 PVDINV-GKRIRLRRMILGMSQEKLGECLGI--TFQQVQKYEKGVNRVGASRLQHIS 63 +D N+ G RI+ R G S EK G+ + ++E GVN RL +++ Sbjct: 149 SIDKNLMGNRIKTIRKNRGESLEKFGQNFTCPARKNVINRWENGVNIPDVERLMNVA 205 Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 RI R + +S + L +GI+ + G ++ + I+ L Sbjct: 78 NRIIEYRDLNNLSNKNLANKIGISEALLSYILNGRRKLSKEIQRKIALFL 127 Score = 33.6 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R R R + + G+ IT + KYE G + R+ + + + + F Sbjct: 242 LGVRFRKIRSDYRLERINFGKLFSPSITKWSIDKYENGKDVPNTERIIQYAYIGKVSLEF 301 Query: 73 F 73 Sbjct: 302 L 302 >gi|315645386|ref|ZP_07898510.1| XRE family transcriptional regulator [Paenibacillus vortex V453] gi|315278864|gb|EFU42174.1| XRE family transcriptional regulator [Paenibacillus vortex V453] Length = 106 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V I +G IR R ++QE+L E +G +F + + E+G L+ I+ L Sbjct: 4 SVAITLGIAIREIRKNQNLTQEELAEKIGSSFSYIGRLERGEGNFTVQTLEKITTALNID 63 Query: 70 ISFFFDVSPTVCSD 83 FFD D Sbjct: 64 ---FFDFMSLGKKD 74 >gi|326774009|ref|ZP_08233291.1| transcriptional regulator [Actinomyces viscosus C505] gi|326636148|gb|EGE37052.1| transcriptional regulator [Actinomyces viscosus C505] Length = 146 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + I R +QE L +G++ Q + K+E S ++ V + I Sbjct: 2 INSNIATLRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCVRLAHVFDVSIDDLV 61 Query: 75 DVS 77 + Sbjct: 62 NGD 64 >gi|295106009|emb|CBL03552.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 153 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ + R ++QE + L +T Q V ++E G G + I+ + P+ Sbjct: 1 MAIGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETEPGVDMCKLIAATFDMPLME 60 Query: 73 FFDVSP 78 ++ Sbjct: 61 LLEMPD 66 >gi|288905901|ref|YP_003431123.1| transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] gi|288732627|emb|CBI14199.1| putative transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] Length = 117 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R ++Q++L + L ++ Q + +E+G + + +I++ + Sbjct: 4 KRLKKLRKEANLTQQELAKNLNVSQQIIGLWERGERKPKIEAINNIAKYFNVSTEYL--Q 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 T +I +E + + + +LN Sbjct: 62 GKTDNKEIEEDELELANTLFRTTVKELN 89 >gi|288947755|ref|YP_003445138.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898271|gb|ADC64106.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 79 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G R+++RR LG++Q +L E +G+T + ++E G + + +++ L + + Sbjct: 8 KELGHRLKVRRTELGLNQTELAERIGLTQAYISQWELGTRAMRIEQAVVLTQALNTTLG 66 >gi|237732671|ref|ZP_04563152.1| DNA-binding protein [Mollicutes bacterium D7] gi|229384247|gb|EEO34338.1| DNA-binding protein [Coprobacillus sp. D7] Length = 344 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 34/53 (64%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ +R+ LG +QE+L + L +T V K+E+G++ + L ++ +L++ ++ Sbjct: 7 IKEKRLALGYTQEQLAKFLNLTTPAVNKWERGISYPDITILPALARILKTDLN 59 >gi|237735295|ref|ZP_04565776.1| predicted protein [Mollicutes bacterium D7] gi|229381040|gb|EEO31131.1| predicted protein [Coprobacillus sp. D7] Length = 70 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ G RI+ R+ +SQE+L G++ + E+G V ++ I+ Sbjct: 2 DKIEVKFGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFAV 61 Query: 69 PISFFFD 75 + FD Sbjct: 62 NLKELFD 68 >gi|226322523|ref|ZP_03798041.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] gi|225209017|gb|EEG91371.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] Length = 197 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 5/101 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G++ +++ E G T + + E+ + L+ I+ L+ + Sbjct: 3 GSRIREMRKKRGLTLKEVAEATGYTIGHISQIERDLKSPSLVALRKIAVCLDCSEVWLIM 62 Query: 76 VSPTVCSDISSEENNVMD-FISTPDGLQLNRYFIQIDDVKV 115 + + E + ++ + NR ++I ++ V Sbjct: 63 GDSELSAKSPEEGKKSKESYLVRKE----NRIPMKIPEIDV 99 >gi|160939992|ref|ZP_02087337.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC BAA-613] gi|158436572|gb|EDP14339.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC BAA-613] Length = 74 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + I VG RIR R L +SQE L G+ + E G + L+ I L+ Sbjct: 6 DIRIKVGNRIRQLRKELLLSQESLAFKAGLDRTYIASVENGKRNLSIMSLEKIIVALDCS 65 Query: 70 ISFFFDV 76 ++ FF+ Sbjct: 66 MAEFFET 72 >gi|114769621|ref|ZP_01447231.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] gi|114549326|gb|EAU52208.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 36/71 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ +L E +G + + + E+ ++ + L+ +++ + P+S FF Sbjct: 12 LGVDLRALRKSRGITLTELSEKMGRSVGWLSQVERDISSPTINELRQLAKEFQVPLSLFF 71 Query: 75 DVSPTVCSDIS 85 + +++ Sbjct: 72 GSTEAKANEVG 82 >gi|297581782|ref|ZP_06943703.1| DNA methyltransferase [Vibrio cholerae RC385] gi|297533876|gb|EFH72716.1| DNA methyltransferase [Vibrio cholerae RC385] Length = 69 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VGKRI R G+SQ+KL I V + E+G + +L +++ L Sbjct: 7 VIVGKRIAKIRKSKGLSQDKLALLSEIDRSYVGRIERGEVNITLEKLYELADTLGCD 63 >gi|47567072|ref|ZP_00237789.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|206970262|ref|ZP_03231215.1| DNA-binding protein [Bacillus cereus AH1134] gi|206978226|ref|ZP_03239106.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217962506|ref|YP_002341078.1| DNA-binding protein [Bacillus cereus AH187] gi|218234825|ref|YP_002369834.1| DNA-binding protein [Bacillus cereus B4264] gi|222098481|ref|YP_002532539.1| DNA-binding protein [Bacillus cereus Q1] gi|296505465|ref|YP_003667165.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|47556390|gb|EAL14724.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|206734839|gb|EDZ52008.1| DNA-binding protein [Bacillus cereus AH1134] gi|206743585|gb|EDZ55012.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065545|gb|ACJ79795.1| DNA-binding protein [Bacillus cereus AH187] gi|218162782|gb|ACK62774.1| DNA-binding protein [Bacillus cereus B4264] gi|221242540|gb|ACM15250.1| DNA-binding protein [Bacillus cereus Q1] gi|296326517|gb|ADH09445.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 73 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ LG+ +G + Q + E+G I+++ P+ F + Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFTL 64 Query: 77 SPTVCSD 83 D Sbjct: 65 VEGEEDD 71 >gi|15900920|ref|NP_345524.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|111657887|ref|ZP_01408599.1| hypothetical protein SpneT_02000929 [Streptococcus pneumoniae TIGR4] gi|149242896|pdb|2P5T|A Chain A, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242898|pdb|2P5T|C Chain C, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242900|pdb|2P5T|E Chain E, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242902|pdb|2P5T|G Chain G, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|14972524|gb|AAK75164.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] Length = 158 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 56 >gi|330821963|ref|YP_004350825.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327373958|gb|AEA65313.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 193 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N + N + +G +IR R L + ++ GI+ + + E+G+ + L Sbjct: 5 TENTQAQNAA-VELGGKIRALRQRLKRTLDETAGAAGISKPFLSQVERGLASPSITSLAG 63 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + +F + S ++ F + F ++ +V +++ Sbjct: 64 IAHALGVNVQYFVETPSEERSVCRGDQLRFFSFADS------ANLFARLTNVSAGRQLEA 117 Query: 122 -LVR 124 LVR Sbjct: 118 ILVR 121 >gi|325840355|ref|ZP_08167002.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1] gi|325490340|gb|EGC92667.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1] Length = 143 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +R R I +QE + E L ++ Q + K+E G L S++ + Sbjct: 2 ISMNLRRLRKIHQYTQENVAEKLNVSRQSIAKWESGETTPDLEHLLKFSKLYNVSLD 58 >gi|307244718|ref|ZP_07526820.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306491895|gb|EFM63946.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 71 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 31/67 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G++Q++LG+ + ++ Q + E+G + ++++ + + F Sbjct: 5 NKLKEYRAQKGINQQELGKLVDVSRQTISLIERGDYNPSITLCLKLAKLFDVNVEDIFIY 64 Query: 77 SPTVCSD 83 +D Sbjct: 65 EEDEEND 71 >gi|306833435|ref|ZP_07466562.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424205|gb|EFM27344.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 202 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RI++ R + MSQ++ L I + YE N L +I++ + Sbjct: 3 NVTLGERIQVLRKNMKMSQKEFAVFLEIPQPSLSAYENNRNSPTIEVLINIAKKCHISLD 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + + S ++V DF+ + Sbjct: 63 WL--CGISTYQHQLSSLSDVGDFLYS 86 >gi|302188150|ref|ZP_07264823.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 201 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 7 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 66 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 67 VLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 99 >gi|289825657|ref|ZP_06544828.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 185 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 19 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 76 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 77 PQAEFPPTFDPQQQAMVITP 96 >gi|256377105|ref|YP_003100765.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921408|gb|ACU36919.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 200 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G++ +L G++ + + E G R L ++ + P+ Sbjct: 12 VGPRLRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLLLARAYDVPLDDL 70 >gi|322614855|gb|EFY11780.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619297|gb|EFY16177.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623108|gb|EFY19950.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628399|gb|EFY25187.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322638630|gb|EFY35325.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640981|gb|EFY37628.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645436|gb|EFY41964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651679|gb|EFY48051.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654419|gb|EFY50741.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661261|gb|EFY57487.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665035|gb|EFY61223.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667779|gb|EFY63939.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671809|gb|EFY67930.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677145|gb|EFY73209.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680191|gb|EFY76230.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685379|gb|EFY81375.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194734|gb|EFZ79923.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199893|gb|EFZ84981.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204415|gb|EFZ89423.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205808|gb|EFZ90771.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213863|gb|EFZ98638.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218217|gb|EGA02928.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219101|gb|EGA03605.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223909|gb|EGA08207.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231997|gb|EGA16104.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234524|gb|EGA18611.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237976|gb|EGA22035.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323246445|gb|EGA30427.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253730|gb|EGA37557.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259005|gb|EGA42655.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260789|gb|EGA44393.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266543|gb|EGA50030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271267|gb|EGA54694.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 178 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|213857689|ref|ZP_03384660.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 178 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|204927953|ref|ZP_03219154.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323295|gb|EDZ08491.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322634804|gb|EFY31535.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|323243422|gb|EGA27441.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 185 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 19 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 76 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 77 PQAEFPPTFDPQQQAMVITP 96 >gi|195873244|ref|ZP_02696881.2| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197264542|ref|ZP_03164616.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|195634360|gb|EDX52712.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197242797|gb|EDY25417.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 185 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 19 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 76 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 77 PQAEFPPTFDPQQQAMVITP 96 >gi|194735253|ref|YP_002114629.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300747|ref|ZP_02660781.2| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194710755|gb|ACF89976.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291093|gb|EDY30446.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 185 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 19 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 76 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 77 PQAEFPPTFDPQQQAMVITP 96 >gi|194471472|ref|ZP_03077456.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358313|ref|ZP_02655078.2| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457836|gb|EDX46675.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335557|gb|EDZ22321.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 185 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 19 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 76 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 77 PQAEFPPTFDPQQQAMVITP 96 >gi|194445981|ref|YP_002040851.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404644|gb|ACF64866.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 178 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|197251173|ref|YP_002146431.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|238911841|ref|ZP_04655678.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197214876|gb|ACH52273.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 178 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|167549918|ref|ZP_02343676.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325107|gb|EDZ12946.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 178 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|161613938|ref|YP_001587903.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363302|gb|ABX67070.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 178 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|160934341|ref|ZP_02081728.1| hypothetical protein CLOLEP_03212 [Clostridium leptum DSM 753] gi|156867014|gb|EDO60386.1| hypothetical protein CLOLEP_03212 [Clostridium leptum DSM 753] Length = 177 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ GM+Q+ LG +G + ++ +YE G + A +++VL+ Sbjct: 1 MAIGERIHFFRLLRGMTQKYLGTAVGFPERSADVRLAQYETGSRKPKADLTAALAQVLDV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|16760275|ref|NP_455892.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141958|ref|NP_805300.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213021706|ref|ZP_03336153.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052213|ref|ZP_03345091.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416599|ref|ZP_03349743.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426252|ref|ZP_03359002.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582138|ref|ZP_03363964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|25512933|pir||AG0668 probable DNA-binding protein STY1459 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502570|emb|CAD01720.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137587|gb|AAO69149.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 178 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|89896019|ref|YP_519506.1| hypothetical protein DSY3273 [Desulfitobacterium hafniense Y51] gi|219670447|ref|YP_002460882.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335467|dbj|BAE85062.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540707|gb|ACL22446.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 123 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + +GK++R R +S +L + G+ + + E G + + +++ L ++ Sbjct: 2 LELGKQLRKIRKDKKLSAAELSQISGVARSLISQLESGKRQSTSIDTVYRLAKALNVSVA 61 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPD 99 P I+ ++N+ + + Sbjct: 62 SLLIEEPGTPPAIAYKQNDKKSPLYLKE 89 >gi|319764265|ref|YP_004128202.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317118826|gb|ADV01315.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 118 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G I+ +R G SQ+ + E LGIT + +YE+G + +L I+E + Sbjct: 11 IGASIKRKREESGYSQKLVAEHLGITEKTCSEYERGKTQPPLLKLIAIAEFFQC 64 >gi|269794969|ref|YP_003314424.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269097154|gb|ACZ21590.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 204 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 21/120 (17%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R L +S + L + G++ V + E+G+ +Q ++ L ++ Sbjct: 23 LGATVRAARKQLDLSVQALAQRAGVSLGLVSQLERGLGNPSLHSIQRLASALGVSVTRLL 82 Query: 75 DVSPTV--------------CSDISSEENNVMDFISTPD--GLQLNR-----YFIQIDDV 113 + + V + +S +QL R F ++ Sbjct: 83 EPPAEELVVVRAGRPHVLPLAPGTPDDGQAVRELLSPRGETAIQLIRTTLPPAFTNVERP 142 >gi|222528145|ref|YP_002572027.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222454992|gb|ACM59254.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 81 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I + ++L + +G+T Q + KY +G + + +L I+E P+ +F Sbjct: 7 IGNNIHALMKKQNVKIKQLADLIGVTRQTMTKYLEGEVIIDSEKLFKIAEFFGKPLDYFL 66 Query: 75 D 75 + Sbjct: 67 E 67 >gi|212633085|ref|YP_002309610.1| Cro/CI family transcriptional regulator [Shewanella piezotolerans WP3] gi|212554569|gb|ACJ27023.1| Transcriptional regulator, Cro/CI family [Shewanella piezotolerans WP3] Length = 69 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L + L ++ Q + EKG ++ + + PI F+ Sbjct: 3 NRLKILRAERDWTQADLADKLEVSRQTINAIEKGKYDPSLPLAFKVARLFQIPIEAIFED 62 Query: 77 SPTVC 81 V Sbjct: 63 EAEVE 67 >gi|209547110|ref|YP_002279028.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538354|gb|ACI58288.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 207 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V V + +++ R G S ++L G++ + + EKG + L + L + Sbjct: 18 VSATVSQNLKIFRRDSGFSLDELSRRSGVSKGMLVEIEKGTANPSIATLCRAATALGVSV 77 Query: 71 SFFFDVSPTVCSDISSEEN 89 + F V+ +V I E+ Sbjct: 78 ADFVGVASSVPVRIVPPED 96 >gi|21910272|ref|NP_664540.1| hypothetical protein SpyM3_0736 [Streptococcus pyogenes MGAS315] gi|28876201|ref|NP_795428.1| hypothetical protein SpyM3_0736 [Streptococcus pyogenes phage 315.1] gi|28895849|ref|NP_802199.1| repressor C1 [Streptococcus pyogenes SSI-1] gi|21904467|gb|AAM79343.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes phage 315.1] gi|28811098|dbj|BAC64032.1| putative repressor C1 [Streptococcus pyogenes SSI-1] Length = 69 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG++IR +R + ++Q +L E L Q + E G R L + ++ + F Sbjct: 6 FVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQDLVKLRKIFNVSVDDF 65 >gi|148543259|ref|YP_001270629.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152670|ref|YP_001841011.1| hypothetical protein LAR_0015 [Lactobacillus reuteri JCM 1112] gi|227364322|ref|ZP_03848415.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683521|ref|ZP_08163037.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148530293|gb|ABQ82292.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|183224014|dbj|BAG24531.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227070635|gb|EEI08965.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977871|gb|EGC14822.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 185 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ G++I R LG++Q+ + + L IT Q + K+E + L +SE+ + Sbjct: 1 MSFGEQILSRCKELGLTQQNVADELHITRQTLSKWENNKSYPDLKLLLALSEIYHVSVD 59 >gi|326330980|ref|ZP_08197279.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] gi|325951191|gb|EGD43232.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] Length = 268 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG +R R + +SQ L ++ + V E G R + ++EVL P++ Sbjct: 18 VGSELRRWRELRSLSQLALATQAEVSTRHVSYVENGRARPTPEMIVRLAEVLRVPMA 74 >gi|282165400|ref|YP_003357785.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] gi|282157714|dbj|BAI62802.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] Length = 63 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R M+QE L +G++ Q + E G ++ E+ I F Sbjct: 3 NRLKELRARFNMTQEDLAVKVGVSRQTINAIETGKYDPSLPLAFKLARCFETNIEHLF 60 >gi|259047642|ref|ZP_05738043.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035833|gb|EEW37088.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 70 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L L ++ Q V E G I+ E I F Sbjct: 3 NRLEEIRKAKGITQEELANALEVSRQTVGSLENGRYNPSIILAFKIARFFEVSIEEVFIY 62 Query: 77 SPTVCSD 83 D Sbjct: 63 EEDQNED 69 >gi|255280255|ref|ZP_05344810.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255269346|gb|EET62551.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 106 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++Q +L L ++ + + YEKG A L ++++ I + + Sbjct: 2 NRIKELREEKHITQIRLSIDLEVSQETISAYEKGKYYPSAKSLIKLADIFGVSIDYLLGI 61 Query: 77 SP 78 S Sbjct: 62 SD 63 >gi|167756456|ref|ZP_02428583.1| hypothetical protein CLORAM_01989 [Clostridium ramosum DSM 1402] gi|167703864|gb|EDS18443.1| hypothetical protein CLORAM_01989 [Clostridium ramosum DSM 1402] Length = 344 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 34/53 (64%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ +R+ LG +QE+L + L +T V K+E+G++ + L ++ +L++ ++ Sbjct: 7 IKEKRLALGYTQEQLAKFLNLTTPAVNKWERGISYPDITILPALARILKTDLN 59 >gi|162447309|ref|YP_001620441.1| membrane-anchored DNA-binding protein [Acholeplasma laidlawii PG-8A] gi|161985416|gb|ABX81065.1| membrane-anchored DNA-binding protein, putative [Acholeplasma laidlawii PG-8A] Length = 269 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 30/53 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I RR L ++Q++L + L ++ + + K+E G + + + ++E+L +S Sbjct: 8 ILERRKTLRLTQKELAQKLNVSDKVISKWETGSSLPDITLINPLAELLGITVS 60 >gi|159038038|ref|YP_001537291.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916873|gb|ABV98300.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 175 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G+S L GI+ + E+G S L ++ L P+ + Sbjct: 2 GSHVHRLRTAAGISLADLAAAGGISRTTLHGIEQGHGNPTLSTLWALATALRVPLGELLE 61 Query: 76 VSPTVCSDISSEEN 89 + + ++++ Sbjct: 62 TPNSTTDVVRADDD 75 >gi|148360856|ref|YP_001252063.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby] gi|296106080|ref|YP_003617780.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99 Alcoy] gi|148282629|gb|ABQ56717.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby] gi|295647981|gb|ADG23828.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99 Alcoy] Length = 224 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 12/111 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-----SPI 70 G+RI+ RM+ G+S++ L E GI+ +Q +E G N + ++ + +L I Sbjct: 15 GQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNKAKAASLVGILNQYDVSCSI 74 Query: 71 SFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + S I +E + V + +++ +Q F + ++ Sbjct: 75 DWLLEGIGKGPSVIENEFQNYPFLADTVGNLLASEQAIQKEIDFFKTNNPN 125 >gi|111657106|ref|ZP_01407894.1| hypothetical protein SpneT_02001666 [Streptococcus pneumoniae TIGR4] gi|116517019|ref|YP_816720.1| transcriptional repressor, putative [Streptococcus pneumoniae D39] gi|148985331|ref|ZP_01818554.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae SP3-BS71] gi|148989546|ref|ZP_01820905.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae SP6-BS73] gi|148990563|ref|ZP_01821689.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae SP6-BS73] gi|148993017|ref|ZP_01822611.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae SP9-BS68] gi|148997524|ref|ZP_01825129.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae SP11-BS70] gi|149002814|ref|ZP_01827740.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae SP14-BS69] gi|149011664|ref|ZP_01832860.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae SP19-BS75] gi|168486119|ref|ZP_02710627.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|168489588|ref|ZP_02713787.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|168491326|ref|ZP_02715469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168493326|ref|ZP_02717469.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|168575882|ref|ZP_02721797.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|169834092|ref|YP_001694857.1| hypothetical protein SPH_1553 [Streptococcus pneumoniae Hungary19A-6] gi|194398183|ref|YP_002038070.1| hypothetical protein SPG_1363 [Streptococcus pneumoniae G54] gi|221232161|ref|YP_002511314.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225854869|ref|YP_002736381.1| hypothetical protein SPJ_1321 [Streptococcus pneumoniae JJA] gi|225857057|ref|YP_002738568.1| hypothetical protein SPP_1441 [Streptococcus pneumoniae P1031] gi|225860797|ref|YP_002742306.1| hypothetical protein SPT_0851 [Streptococcus pneumoniae Taiwan19F-14] gi|237650477|ref|ZP_04524729.1| transcriptional repressor, putative [Streptococcus pneumoniae CCRI 1974] gi|237821792|ref|ZP_04597637.1| transcriptional repressor, putative [Streptococcus pneumoniae CCRI 1974M2] gi|298229247|ref|ZP_06962928.1| transcriptional repressor, putative [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255692|ref|ZP_06979278.1| transcriptional repressor, putative [Streptococcus pneumoniae str. Canada MDR_19A] gi|303254577|ref|ZP_07340681.1| transcriptional repressor, putative [Streptococcus pneumoniae BS455] gi|303259019|ref|ZP_07344998.1| hypothetical protein CGSSp9vBS293_11153 [Streptococcus pneumoniae SP-BS293] gi|303261703|ref|ZP_07347650.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae SP14-BS292] gi|303264372|ref|ZP_07350292.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae BS397] gi|303265829|ref|ZP_07351726.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae BS457] gi|303268162|ref|ZP_07353961.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae BS458] gi|307068076|ref|YP_003877042.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|116077595|gb|ABJ55315.1| transcriptional repressor, putative [Streptococcus pneumoniae D39] gi|147756579|gb|EDK63620.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae SP11-BS70] gi|147759108|gb|EDK66102.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae SP14-BS69] gi|147764095|gb|EDK71027.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae SP19-BS75] gi|147922529|gb|EDK73648.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae SP3-BS71] gi|147924201|gb|EDK75301.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae SP6-BS73] gi|147925089|gb|EDK76170.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae SP6-BS73] gi|147928218|gb|EDK79235.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae SP9-BS68] gi|168996594|gb|ACA37206.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|183570815|gb|EDT91343.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|183571900|gb|EDT92428.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|183574439|gb|EDT94967.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183576644|gb|EDT97172.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|183578217|gb|EDT98745.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194357850|gb|ACF56298.1| conserved domain protein [Streptococcus pneumoniae G54] gi|220674622|emb|CAR69186.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225723584|gb|ACO19437.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|225724319|gb|ACO20171.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|225727030|gb|ACO22881.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|301794461|emb|CBW36896.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|301800287|emb|CBW32907.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] gi|301802162|emb|CBW34900.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302598545|gb|EFL65587.1| transcriptional repressor, putative [Streptococcus pneumoniae BS455] gi|302637283|gb|EFL67771.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae SP14-BS292] gi|302639962|gb|EFL70418.1| hypothetical protein CGSSpBS293_11153 [Streptococcus pneumoniae SP-BS293] gi|302642241|gb|EFL72589.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae BS458] gi|302644564|gb|EFL74814.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae BS457] gi|302646184|gb|EFL76411.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae BS397] gi|306409613|gb|ADM85040.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|327389609|gb|EGE87954.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332073729|gb|EGI84208.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332075003|gb|EGI85475.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332200864|gb|EGJ14936.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] gi|332203252|gb|EGJ17320.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 69 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|110638280|ref|YP_678489.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110280961|gb|ABG59147.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 259 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + ++ R LG +QE+L + +GI + YE+G G L ++ + E+ + Sbjct: 4 ISENVKYFRKQLGFTQEQLAQRIGIKRSLLGAYEEGRAEPGLETLTILARLFETTVD 60 >gi|330987826|gb|EGH85929.1| repressor protein cI [Pseudomonas syringae pv. lachrymans str. M301315] Length = 250 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R LG++QEK E LG+ Y G N + ++ +L+ P+ F Sbjct: 23 EKRKALGLTQEKAAEALGMNQGSFSHYLNGRNALNTPFAVQVAHLLQVPVEAF 75 >gi|319947513|ref|ZP_08021745.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319746453|gb|EFV98714.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 227 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ RR+ LG++Q ++ E L I+ + +E G+ L+ +++ L +F D Sbjct: 7 KKLKDRRLELGLTQAQVYESLEISRKTYSSWENGLAEPHDKNLRRLAKHLSVKEDYFVDK 66 Query: 77 SPTVCSD--ISSEENNVMDFIST 97 S + + ++ +D +++ Sbjct: 67 SSALFTYPLLTPPHQKKVDLLAS 89 >gi|297184311|gb|ADI20428.1| predicted transcriptional regulators [uncultured alpha proteobacterium EB080_L43F08] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 36/71 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ +L E +G + + + E+ ++ + L+ +++ + P+S FF Sbjct: 12 LGVDLRALRKSRGITLTELSEKMGRSVGWLSQVERDISSPTINELRQLAKEFQVPLSLFF 71 Query: 75 DVSPTVCSDIS 85 + +++ Sbjct: 72 GSTEAKANEVG 82 >gi|291521015|emb|CBK79308.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 253 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 13 VTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVSVT 65 >gi|261209042|ref|ZP_05923446.1| predicted protein [Enterococcus faecium TC 6] gi|289566563|ref|ZP_06446985.1| predicted protein [Enterococcus faecium D344SRF] gi|294615927|ref|ZP_06695763.1| repressor [Enterococcus faecium E1636] gi|260076954|gb|EEW64677.1| predicted protein [Enterococcus faecium TC 6] gi|289161662|gb|EFD09540.1| predicted protein [Enterococcus faecium D344SRF] gi|291591214|gb|EFF22887.1| repressor [Enterococcus faecium E1636] Length = 250 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R G++ E+L + +G T + +YE G + ++ + +S+ Sbjct: 8 QRLKELRAEKGITLEELAKKIGTTKTTLSRYENGERSPKLQLVGLLANYFQVEMSWL 64 >gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 198 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R G++ ++L ++ + + E+ + S L ++ L+ PI+ F Sbjct: 136 IGRNIRELRKTRGLTLKQLSRRTNLSVSLLSQIERAESSASVSSLFKVATALDVPITELF 195 >gi|226325766|ref|ZP_03801284.1| hypothetical protein COPCOM_03579 [Coprococcus comes ATCC 27758] gi|225205890|gb|EEG88244.1| hypothetical protein COPCOM_03579 [Coprococcus comes ATCC 27758] Length = 177 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +GKRIR R GM+Q++LGE LG + ++ +YE ++ ++ + + Sbjct: 1 MAIGKRIRFFRNRKGMTQKQLGEILGFLGKTSDVRMAQYESEARTPKQDLVKEMAHIFDV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|222097971|ref|YP_002532028.1| DNA-binding protein [Bacillus cereus Q1] gi|221242029|gb|ACM14739.1| DNA-binding protein [Bacillus cereus Q1] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|170697248|ref|ZP_02888342.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170137868|gb|EDT06102.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 73 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G +R R SQE+L E G+ V + E+G I+ + IS Sbjct: 7 HFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSIS 64 >gi|34558590|gb|AAQ75063.1| putative CI-like repressor [Lactobacillus phage JCL1032] Length = 120 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+ R LG+S+ ++ L + +E G+ + +++ + + Sbjct: 5 LGSRLTQLRESLGLSKAEVARRLHVGNTSYSNWEYGLREPNVDMIVTLADFFDVSTDYLL 64 Query: 75 D--------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 P V D+ +E + PD L Y+ + + +R++ Sbjct: 65 GRDSGIWEVKEPAVHYDLGEDEPLSYRGVELPD--DLKSYYRSMAETYIRKR 114 >gi|220930677|ref|YP_002507586.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220001005|gb|ACL77606.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 281 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 3/86 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R G++ E L + L ++ + YE + L +E + + Sbjct: 1 MTLGENIRELRKKKGLTIEALADELNSSYSTIGMYELDKRKPDYDMLCKFAEYFNVTVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 V I S + +FI Sbjct: 61 LLGVKKKS---ILSASDLYKEFIEQK 83 >gi|186471664|ref|YP_001862982.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197973|gb|ACC75936.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 110 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQ 60 KK P V G+R+R R+ + Q+KLG +G+ +V +YE GV+ Sbjct: 3 KKEPATV---FGRRLRAARLQADIPQDKLGVKIGLDEGTASVRVSRYETGVHEPPFGIAV 59 Query: 61 HISEVLESPISFFF 74 ++ L P ++F+ Sbjct: 60 KLAAALRIPAAYFY 73 >gi|110681030|ref|YP_684037.1| helix-turn-helix domain-containing protein [Roseobacter denitrificans OCh 114] gi|109457146|gb|ABG33351.1| helix-turn-helix domain protein, putative [Roseobacter denitrificans OCh 114] Length = 135 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R M+Q +L LG+ ++ +E ++ A+RL ++ +L + + + Sbjct: 16 GDRLAAARETSEMTQAELARRLGVRVATLRSWENDLSEPRANRLSMMAGLLNVSMMWLIN 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E S + L R ++R +I V + EKK R Sbjct: 76 GQGEGLDAPMEERALPA---SASEVLNEMR--------ELRTDMIARVEQMGRLEKKLRV 124 Query: 136 IEEE 139 + Sbjct: 125 ALRD 128 >gi|86143509|ref|ZP_01061894.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis MED217] gi|85829956|gb|EAQ48417.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis MED217] Length = 71 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G RI R G +Q L G Q ++K E G A L IS+ L+ Sbjct: 10 IGNRIVKLREQKGWTQSDLARECGKDRQAIEKLENGKVNPTAYSLFEISKALKI 63 >gi|330880055|gb|EGH14204.1| RtrR protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 76 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RIR +R +SQ+ L I V + E+G + +L I+ VL S Sbjct: 8 LGRRIRTQRKACQISQDALALACNIDRSYVGRIERGEVNITVEKLYRIAGVLACDPS 64 >gi|329298836|ref|ZP_08256172.1| DNA-binding transcriptional repressor PuuR [Plautia stali symbiont] Length = 186 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 76 VSPTVCS 82 + Sbjct: 69 EPKVNAT 75 >gi|262283318|ref|ZP_06061084.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260809|gb|EEY79509.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 120 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ ++Q + + L I+ ++E G + + L+ ++ + Sbjct: 4 ERLKALRLEANLTQNDIAKSLNISQPSYAQWENGRRKPSSETLEKFAQFYNVSTDYLLGK 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S SD + + + + L+ +I + +R+ ++E ++I + K+ + Sbjct: 64 SDYKNSD--EIDLSTFEVLYRKTSKNLSDEEKKILEEDLREFLLEREKAIKAMNKEKK 119 >gi|237742940|ref|ZP_04573421.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|229430588|gb|EEO40800.1| transcriptional regulator [Fusobacterium sp. 4_1_13] Length = 94 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K IR RR L ++QE+ + G++F ++++E + L I+ Sbjct: 7 NIKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFEN-TGEISLFSLIKIA 65 Query: 64 EVLES 68 +L+ Sbjct: 66 IILDC 70 >gi|228964769|ref|ZP_04125876.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228795019|gb|EEM42518.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 167 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L + +T + + E G LQ+I+E L SF Sbjct: 4 LGAKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVS 77 + Sbjct: 63 EED 65 >gi|227509610|ref|ZP_03939659.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190972|gb|EEI71039.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 125 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 32/72 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R +SQ+ L + L ++ Q + K+E+G + L ++E+ + Sbjct: 8 KQLKKYRAANNLSQDDLAKKLFVSRQAISKWEQGDATPDLNNLVKLAEIFNISLDTLVLG 67 Query: 77 SPTVCSDISSEE 88 + S + + Sbjct: 68 ASETKSTVDQNQ 79 >gi|218557450|ref|YP_002390363.1| repressor protein CI [Escherichia coli S88] gi|218364219|emb|CAR01884.1| putative repressor protein CI [Escherichia coli S88] Length = 230 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + L +I+ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQALSNIARSLGVDIA 60 Query: 72 FFF 74 F Sbjct: 61 DLF 63 >gi|218781551|ref|YP_002432869.1| helix-turn-helix domain protein [Desulfatibacillum alkenivorans AK-01] gi|218762935|gb|ACL05401.1| helix-turn-helix domain protein [Desulfatibacillum alkenivorans AK-01] Length = 376 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRL 59 M ++KI + ++G R++ R G +Q+ L LG+ Q V E G + L Sbjct: 1 MASSEKI---LQKSIGCRVKSARDAKGWTQDDLARGLGLKDRQSVSDIENGKRALKPEEL 57 Query: 60 QHISEVLESPISFFFDVSPTVCSDI 84 +S++L+ + FF D Sbjct: 58 VALSDILDREVEFFIDPFSVAGEAA 82 >gi|157159776|ref|YP_001457094.1| helix-turn-helix/peptidase S24-like domain-containing protein [Escherichia coli HS] gi|157065456|gb|ABV04711.1| helix-turn-helix/peptidase S24-like domain protein [Escherichia coli HS] Length = 213 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ L R GM+Q +L + G+ +Q+ YE G + LQ ++ L + + Sbjct: 9 SRVSLARQSRGMTQAQLSKLAGVVQRQIAAYEGGEAKPRLRVLQALANALGTTAEWL 65 >gi|150396246|ref|YP_001326713.1| helix-turn-helix domain-containing protein [Sinorhizobium medicae WSM419] gi|150027761|gb|ABR59878.1| helix-turn-helix domain protein [Sinorhizobium medicae WSM419] Length = 130 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R G+S ++L LG+ + +E+ A+RL ++ VL ++ Sbjct: 21 LGGRIWRARDATGLSTKELASKLGVRNDTIASWERDRAEPRANRLFMLAGVLGVSPAWLM 80 Query: 75 DVSPTVCSDISS 86 D + Sbjct: 81 AGIGRAPDDTAG 92 >gi|91214040|ref|YP_544026.1| putative regulatory protein [Escherichia coli UTI89] gi|117626694|ref|YP_860017.1| putative regulatory protein [Escherichia coli APEC O1] gi|218561557|ref|YP_002394470.1| transcriptional regulator from phage origin [Escherichia coli S88] gi|300925249|ref|ZP_07141146.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] gi|307139345|ref|ZP_07498701.1| putative transcriptional regulator from phage origin [Escherichia coli H736] gi|331643341|ref|ZP_08344472.1| regulatory protein [Escherichia coli H736] gi|91075614|gb|ABE10495.1| putative regulatory protein [Escherichia coli UTI89] gi|115515818|gb|ABJ03893.1| putative regulatory protein [Escherichia coli APEC O1] gi|218368326|emb|CAR06145.1| putative transcriptional regulator from phage origin [Escherichia coli S88] gi|300418618|gb|EFK01929.1| peptidase S24-like domain protein [Escherichia coli MS 182-1] gi|331036812|gb|EGI09036.1| regulatory protein [Escherichia coli H736] Length = 230 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + L +I+ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQALSNIARSLGVDIA 60 Query: 72 FFF 74 F Sbjct: 61 DLF 63 >gi|28867345|ref|NP_789964.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|302133575|ref|ZP_07259565.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850579|gb|AAO53659.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331018535|gb|EGH98591.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 199 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 8/99 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESP 69 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P Sbjct: 16 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIP 72 Query: 70 ISF--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +S FF + P + + + + ++D ++L Sbjct: 73 MSMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLV 111 >gi|328886831|emb|CCA60070.1| transcription regulator [Streptomyces venezuelae ATCC 10712] Length = 202 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R+ G+S ++ +T + + E+G+ V L + EVL + F Sbjct: 24 GARLRKFRLDRGLSLTEVAHRAEVTKGFLSQLERGLTSVSVPTLLRVCEVLRIGVGELFA 83 Query: 76 VSPTVCSDISSEENN----VMDFISTPDG 100 D S V +++ TP G Sbjct: 84 YPDEHVVDGGSRIGMGGEGVAEYLLTPAG 112 >gi|228918433|ref|ZP_04081881.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841238|gb|EEM86432.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 2 IGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60 >gi|229098961|ref|ZP_04229896.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] gi|229105128|ref|ZP_04235779.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|228678309|gb|EEL32535.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|228684459|gb|EEL38402.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|227894126|ref|ZP_04011931.1| transcription regulator [Lactobacillus ultunensis DSM 16047] gi|227864071|gb|EEJ71492.1| transcription regulator [Lactobacillus ultunensis DSM 16047] Length = 393 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+++R R + G S+ +L + L ++ Q + +YE ++ + E+ + FF Sbjct: 4 GEKLRQLRELHGFSRNELAQKLNVSEQTIGQYENNQITPRLDIMRKLPEMFSVNMHFF 61 >gi|213970668|ref|ZP_03398793.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|213924502|gb|EEB58072.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 198 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 8/99 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESP 69 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P Sbjct: 15 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIP 71 Query: 70 ISF--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +S FF + P + + + + ++D ++L Sbjct: 72 MSMVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLV 110 >gi|163791646|ref|ZP_02186042.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7] gi|159873068|gb|EDP67176.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7] Length = 66 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ SQ + E L I+ Q + K+E ++ L +S + I Sbjct: 1 MLLGKKLKSSRVKKKYSQNDVAEQLHISRQSISKWENDISYPELDNLVKLSTYYQVSIDH 60 Query: 73 FFDVSP 78 P Sbjct: 61 LLKEKP 66 >gi|158339379|ref|YP_001520556.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] gi|158309620|gb|ABW31237.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] Length = 216 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R + SQ L LG++ Q V +E G ++++ + I F Sbjct: 3 NRLKELRKLHHKSQAALARDLGVSRQAVNGFESGKFDPSLEMAFKLAKLFKVSIEDVF 60 >gi|154496755|ref|ZP_02035451.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC 29799] gi|150274007|gb|EDN01107.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC 29799] Length = 82 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R G++Q ++ + LG+T QK E G + L +++ + Sbjct: 15 ANLKYLRQKKGLTQGEMAKLLGVTTNHYQKIEYGKVNIPVLTLCFLADYFGVTTDYL 71 >gi|124267559|ref|YP_001021563.1| XRE family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124260334|gb|ABM95328.1| transcriptional regulator, XRE family [Methylibium petroleiphilum PM1] Length = 107 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 18/96 (18%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G+++R R ++ EKL + G++ + + E + R A +L +++ L S+F Sbjct: 5 LGEKLRELRKERKLTLEKLADAAGLSKSYLWELENRESQRPSAEKLTALADALGVAASYF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + P+ L+ F + Sbjct: 65 IEED-----------------VRAPEERHLDEAFFR 83 >gi|332668877|ref|YP_004451885.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337915|gb|AEE44498.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC 484] Length = 74 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V RIR R M+Q +L +G+T Q V E+G I+ VL P+ Sbjct: 7 VTNRIRALRFAADEMTQAELARRIGVTRQTVIAIEQGRYSPTLEMAFQIARVLGVPLDEV 66 Query: 74 FDVSPTVC 81 F Sbjct: 67 FQYPDDDG 74 >gi|332523977|ref|ZP_08400229.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332315241|gb|EGJ28226.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 194 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 30/77 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK++ R G SQE L E + ++ Q + +E + L ++ + + Sbjct: 1 MELGKKLSSCRKKAGFSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFNLSLDQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + ++ Sbjct: 61 LVEGDIDEMKKLVQSDD 77 >gi|323463315|gb|ADX75468.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 395 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ ++ RMI G S++ L + L ++ Q V +YE+ +++ +++ FFF Sbjct: 4 GENLKALRMIEGYSRKSLADVLQVSEQAVWQYEEQNMMPEINKIYTLAQKFNVKTKFFF 62 >gi|325104086|ref|YP_004273740.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324972934|gb|ADY51918.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 113 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK+IRL R G SQE + + L I+ K E G+ V SRL+ IS + + + Sbjct: 2 KLLGKKIRLLRHQRGWSQEDVSKQLDISIPAFSKIETGITDVNLSRLEQISALFDMSV 59 >gi|300902558|ref|ZP_07120535.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|301301996|ref|ZP_07208129.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|300405371|gb|EFJ88909.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300842548|gb|EFK70308.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|315253734|gb|EFU33702.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] Length = 230 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + L +I+ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQALSNIARSLGVDIA 60 Query: 72 FFF 74 F Sbjct: 61 DLF 63 >gi|298717602|ref|YP_003730244.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361791|gb|ADI78572.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 200 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V V RI+ R +S ++L G++ + + EKG + L I+ L + Sbjct: 18 VSQAVSDRIKSWRKSQKLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKIAAALGVSV 77 Query: 71 S 71 + Sbjct: 78 A 78 >gi|291526790|emb|CBK92376.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 109 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG I+ R+ +++E L LGI+ ++KYE G + + L I + + + Sbjct: 7 QVGIVIKSLRIQRNLTKEALAAELGISVSTIKKYENGERALSITNLFKIIDYFKVDANTI 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 +V+ + +MD+ YF +I Sbjct: 67 LNVAEGKKENSIDSRLELMDYSRKA-------YFQKI 96 >gi|228935813|ref|ZP_04098625.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823870|gb|EEM69690.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|229197431|ref|ZP_04324158.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] gi|228586055|gb|EEK44146.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] Length = 374 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISID 62 >gi|225569026|ref|ZP_03778051.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] gi|225161825|gb|EEG74444.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] Length = 323 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G +QE++ E L ++ Q V K+E G + +L +SE+ + + Sbjct: 11 ENLQFLRQKKGYTQEQIAEQLQVSRQSVSKWESGGSFPEMDKLLQLSEMFQCGMDVLVQG 70 Query: 77 SPTVCSDISSEE 88 +E Sbjct: 71 DARNSYVEEHDE 82 >gi|224542577|ref|ZP_03683116.1| hypothetical protein CATMIT_01761 [Catenibacterium mitsuokai DSM 15897] gi|224524502|gb|EEF93607.1| hypothetical protein CATMIT_01761 [Catenibacterium mitsuokai DSM 15897] Length = 119 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 47/113 (41%), Gaps = 4/113 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFFFDV 76 R+R R+ +SQ++L +G+ V ++EK G N + L I+ + + Sbjct: 4 RMRRARLHAKLSQQELATKIGVQRSAVAQWEKTGGNLPSMNHLIDIALATGVTLEWLGTG 63 Query: 77 SPTVCSDIS--SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + +D + +D+ Q + ++ ++R+ ++ ++ + Sbjct: 64 RGPIKADEETWTPAVESLDYAQDETEYQCLQDLRRLP-HQLRENLVGIIAQLA 115 >gi|251794117|ref|YP_003008848.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247541743|gb|ACS98761.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 69 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R + G +Q++L + LG++ + E+G + A + +I+ L D Sbjct: 8 QRVRAFRKLKGYTQQELAKVLGVSVAVLGSLERGTRKPDARLMMNIANTLGISYEELMDT 67 Query: 77 SP 78 Sbjct: 68 ES 69 >gi|196034409|ref|ZP_03101818.1| DNA-binding protein [Bacillus cereus W] gi|195992951|gb|EDX56910.1| DNA-binding protein [Bacillus cereus W] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|49478671|ref|YP_038556.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140999|ref|YP_085831.1| DNA-binding protein [Bacillus cereus E33L] gi|229093600|ref|ZP_04224701.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] gi|49330227|gb|AAT60873.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974468|gb|AAU16018.1| DNA-binding protein [Bacillus cereus E33L] gi|228689809|gb|EEL43615.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|47091893|ref|ZP_00229687.1| Helix-turn-helix domain protein [Listeria monocytogenes str. 4b H7858] gi|47019609|gb|EAL10348.1| Helix-turn-helix domain protein [Listeria monocytogenes str. 4b H7858] gi|328466754|gb|EGF37875.1| helix-turn-helix domain protein [Listeria monocytogenes 1816] Length = 159 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G IR R + GM+Q++LG LG + ++ +YE G + + +S++ + Sbjct: 1 MAIGDNIRKFRKLKGMTQKELGLALGFDKKTADIRIAQYESGTRKPKEDMINDLSKIFDI 60 >gi|30264572|ref|NP_846949.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47530039|ref|YP_021388.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187395|ref|YP_030647.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65321870|ref|ZP_00394829.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165871491|ref|ZP_02216138.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635596|ref|ZP_02393908.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641686|ref|ZP_02399931.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170688288|ref|ZP_02879498.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170708374|ref|ZP_02898818.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177653168|ref|ZP_02935455.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567021|ref|ZP_03019937.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196039163|ref|ZP_03106469.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218905729|ref|YP_002453563.1| DNA-binding protein [Bacillus cereus AH820] gi|227817285|ref|YP_002817294.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228929551|ref|ZP_04092570.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948227|ref|ZP_04110511.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124068|ref|ZP_04253260.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|229600477|ref|YP_002868785.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254687007|ref|ZP_05150865.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724570|ref|ZP_05186353.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254736607|ref|ZP_05194313.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741645|ref|ZP_05199332.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254754757|ref|ZP_05206792.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254757589|ref|ZP_05209616.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|301056014|ref|YP_003794225.1| DNA-binding protein [Bacillus anthracis CI] gi|30259230|gb|AAP28435.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47505187|gb|AAT33863.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181322|gb|AAT56698.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164712788|gb|EDR18318.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510393|gb|EDR85794.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529016|gb|EDR91771.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126749|gb|EDS95632.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170667794|gb|EDT18547.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081692|gb|EDT66763.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562012|gb|EDV15981.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196029790|gb|EDX68391.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218537131|gb|ACK89529.1| DNA-binding protein [Bacillus cereus AH820] gi|227005980|gb|ACP15723.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228659370|gb|EEL15018.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|228811585|gb|EEM57922.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830130|gb|EEM75748.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229264885|gb|ACQ46522.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300378183|gb|ADK07087.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|329120702|ref|ZP_08249364.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327460499|gb|EGF06835.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 82 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P+ + + IR R + +SQE+L I+ + + E+G V + Sbjct: 1 MDETQNSPHAYRMIFAQNIRQIRRMKEISQEELAFAANISRVYIGEVERGSRNVTIDVMG 60 Query: 61 HISEVLESPIS 71 IS+ LE P+ Sbjct: 61 RISDALEVPLD 71 >gi|326943618|gb|AEA19511.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar chinensis CT-43] Length = 131 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R + G+S KLG LG+T + +E G ++ I+ + F+ Sbjct: 7 GQNLRNLRTLKGISLHKLGIELGVTGSAISSWELGNKEPNFDMVKKIAIYFLVSTDYLFN 66 >gi|270264896|ref|ZP_06193160.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041194|gb|EFA14294.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 152 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 8 GQRVKELRVATGMSQEAFADRCGFACSYMSRIERGGSNASLDAIEVLANALSV 60 >gi|262282100|ref|ZP_06059869.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA] gi|262262554|gb|EEY81251.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA] Length = 70 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ M+Q L + +G+T Q + E G S I + L + F Sbjct: 12 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCIAICKCLNKTLDQLF 68 >gi|228924835|ref|ZP_04087992.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834844|gb|EEM80326.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 131 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R + G+S KLG LG+T + +E G ++ I+ + F+ Sbjct: 7 GQNLRNLRTLKGISLHKLGIELGVTGSAISSWELGNKEPNFDMVKKIAIYFLVSTDYLFN 66 >gi|228941681|ref|ZP_04104228.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974608|ref|ZP_04135174.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981203|ref|ZP_04141503.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228778403|gb|EEM26670.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228785011|gb|EEM33024.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817893|gb|EEM63971.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 194 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 5 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 64 Query: 60 QHISEVLESPIS 71 I++ L P+S Sbjct: 65 WKITKGLSIPLS 76 >gi|197301908|ref|ZP_03166972.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC 29176] gi|197298976|gb|EDY33512.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC 29176] Length = 111 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 13/105 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ ++ RR+ LG +QE E GI++ K E+G +++ + + Sbjct: 7 KSIGRTLKERRLQLGYTQELAAEKSGISYSYYTKIERGEQLPSIEICVQLAQTFHLSLDY 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + D + + + L +ID +R+ Sbjct: 67 WLLGTSS-------------DAEISSELIDLAYSLREIDLNSLRK 98 >gi|169333754|ref|ZP_02860947.1| hypothetical protein ANASTE_00138 [Anaerofustis stercorihominis DSM 17244] gi|169259603|gb|EDS73569.1| hypothetical protein ANASTE_00138 [Anaerofustis stercorihominis DSM 17244] Length = 118 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GKR++ +R G++QEKL E + ++ + E G + + +++ +L Sbjct: 6 RKLGKRLKEQRKKQGLTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNLANILNIS 62 >gi|241554132|ref|YP_002979345.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863438|gb|ACS61100.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 283 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + V +G ++R R G SQ L GI+ +Q+ E G + G L Sbjct: 1 MSSTHSPSSAVPNELGIQLRAWRDTRGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLL 60 Query: 61 HISEVLESPI 70 H+++ L+ P+ Sbjct: 61 HLADALDVPL 70 >gi|42783677|ref|NP_980924.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206975999|ref|ZP_03236909.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217961988|ref|YP_002340558.1| DNA-binding protein [Bacillus cereus AH187] gi|228987754|ref|ZP_04147865.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229141235|ref|ZP_04269774.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26] gi|229158112|ref|ZP_04286181.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|229198653|ref|ZP_04325354.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|42739606|gb|AAS43532.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206745751|gb|EDZ57148.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066549|gb|ACJ80799.1| DNA-binding protein [Bacillus cereus AH187] gi|228584812|gb|EEK42929.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|228625341|gb|EEK82099.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|228642276|gb|EEK98568.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26] gi|228772028|gb|EEM20483.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324328397|gb|ADY23657.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|21223122|ref|NP_628901.1| hypothetical protein SCO4743 [Streptomyces coelicolor A3(2)] gi|3449255|emb|CAA20399.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 201 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G R+R R G++ +L GI+ + + E G G L ++ P+ Sbjct: 14 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLD 70 >gi|15600494|ref|NP_253988.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116053448|ref|YP_793775.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894404|ref|YP_002443274.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238004|ref|ZP_04931327.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|254243812|ref|ZP_04937134.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|296392160|ref|ZP_06881635.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313106725|ref|ZP_07792942.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951617|gb|AAG08686.1|AE004943_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588669|gb|ABJ14684.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169935|gb|EAZ55446.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|126197190|gb|EAZ61253.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|218774633|emb|CAW30450.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310879444|gb|EFQ38038.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 182 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLK---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF D+ + + + + ++D S ++L Sbjct: 58 LVEFFSLDLEQDSHTQVVYKADELIDISSGAVSMRLV 94 >gi|326383144|ref|ZP_08204833.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL B-59395] gi|326198280|gb|EGD55465.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL B-59395] Length = 469 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 12/129 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG RIR R +SQ+ L LGI+ + + E + L I+E+ I F Sbjct: 1 MFVGGRIRGLRADRALSQQALAAMLGISASYLNQIEHDNRPLTGPVLAKITEMFGLDIDF 60 Query: 73 FFDVSP----TVCSDISSEENNVMDFISTP--DGLQLNRYFIQIDDVKV----RQKII-- 120 F + +E+ D ++ + + I + V R +++ Sbjct: 61 FDPQDDVRLVAELREALLDEDLDFDPAASDAGEVASMVGSHRAIAEALVGMYQRYRVVSE 120 Query: 121 ELVRSIVSS 129 +L + Sbjct: 121 QLAAATAGR 129 >gi|325919786|ref|ZP_08181781.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] gi|325549742|gb|EGD20601.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] Length = 113 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R+R R ++QE LG G + ++ +YEKGVN + +++ L P++ Sbjct: 12 NRLRHARQKAELTQEALGVAAGLATEVARTRINRYEKGVNECDLRTAKRLADALGMPLAA 71 Query: 73 FFDVSPTVCSDISS 86 FF + V I + Sbjct: 72 FFAETDEVADAIQA 85 >gi|315651586|ref|ZP_07904603.1| transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486145|gb|EFU76510.1| transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 75 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R +SQ++L + +G++ Q + EKG I L+ + F Sbjct: 7 RLKSARAAKDLSQQQLADMVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELF 63 >gi|312131969|ref|YP_003999309.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311908515|gb|ADQ18956.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 109 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G + R G+SQ L LGI + +YE+ + I+++LE + + Sbjct: 1 MDFGTTVADLRKEKGISQTDLAAQLGIHKNVLGRYERNEVFPSIDIARKIADILEVSLDY 60 Query: 73 FFDVSPTVCSDISSE 87 I+S+ Sbjct: 61 LTGKEDVQIDKITSQ 75 >gi|312868590|ref|ZP_07728785.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095887|gb|EFQ54136.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 238 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ RM +Q L + + +T + + +EKG + +++ +S+ Sbjct: 23 NRIKELRMAQHKTQLDLAKKMNVTDRTISNWEKGKREPKIEAWKKMAQYFGVSVSYL 79 >gi|288956863|ref|YP_003447204.1| transcriptional regulator [Azospirillum sp. B510] gi|288909171|dbj|BAI70660.1| transcriptional regulator [Azospirillum sp. B510] Length = 221 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + N +D + R+R R G++ + L E G++ + E+G + AS L ++ Sbjct: 22 ENAANDIDSRLATRLRALRADRGLTLDSLSERSGVSRSMISLVERGESSPTASVLDRLAA 81 Query: 65 VLESPISFFF 74 L ++ F Sbjct: 82 GLGVTLATLF 91 >gi|322419229|ref|YP_004198452.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320125616|gb|ADW13176.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 187 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G R++ R+ ++ + + G + + + E + L I++ + ++ F Sbjct: 5 NIGPRLKKLRLARKLTLQAVATETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQF 64 Query: 74 F--DVSPTVCSDISSEENNVMDFISTPDG 100 F D + + E +++ + + +G Sbjct: 65 FSEDEDDRKFEVVRAGERHIVPRVISKEG 93 >gi|239905667|ref|YP_002952406.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239795531|dbj|BAH74520.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 108 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+R R M+QE+L E G++ Q V + E+G ++ +S LE ++ FD Sbjct: 9 GKRVRSLRRAKDMTQEQLAERAGLSLQSVGEIERGRGNPTLVNIERLSAALEEDLASLFD 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + D+ V + L+L + +VR I+ + R + Sbjct: 69 L-----GDVGMTREQVQ-----KELLELL---AGASEEQVR-AILTMARVL 105 >gi|228995250|ref|ZP_04154964.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] gi|229085911|ref|ZP_04218136.1| Transcriptional regulator, Cro/CI [Bacillus cereus Rock3-44] gi|228697435|gb|EEL50195.1| Transcriptional regulator, Cro/CI [Bacillus cereus Rock3-44] gi|228764488|gb|EEM13323.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] Length = 78 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R++ MSQ+ L + +G++ Q + EK I+ E I+ F Sbjct: 11 NKVYEYRVLKRMSQKDLADAVGVSKQTIFVMEKNNYSPSLVLAYRIANYFEVDINEIF 68 >gi|167754979|ref|ZP_02427106.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402] gi|167705029|gb|EDS19608.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402] Length = 73 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ G RI+ R+ +SQE+L G++ + E+G V ++ I+ Sbjct: 5 DKIEVKFGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFAV 64 Query: 69 PISFFFD 75 + FD Sbjct: 65 NLKELFD 71 >gi|166032267|ref|ZP_02235096.1| hypothetical protein DORFOR_01970 [Dorea formicigenerans ATCC 27755] gi|166027990|gb|EDR46747.1| hypothetical protein DORFOR_01970 [Dorea formicigenerans ATCC 27755] Length = 80 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNR-VGASRLQHISE 64 N D+ +G I+ R ++Q +L E I+ + K E G ++ + S L I+ Sbjct: 5 NDTDLYRVIGANIKHYREQAKLTQVQLAERAKISISYLSKIEAAGCDKSLSISVLNQIAN 64 Query: 65 VLESPISFFF 74 VL I+ FF Sbjct: 65 VLSVDINEFF 74 >gi|81330301|ref|YP_398693.1| hypothetical protein pHTbeta_51 [Enterococcus faecium] gi|80751063|dbj|BAE48135.1| hypothetical protein [Enterococcus faecium] Length = 135 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEV 65 PNP GKRI+ R+ G + E+LG + + + +E+G N +L+ +S + Sbjct: 2 KPNP--SEAGKRIKQLRLSCGFTMEELGRKIDNSPRATISNWERGTNLPNPQKLKLLSTI 59 Query: 66 LESPISF 72 S I + Sbjct: 60 TNSTIDW 66 >gi|15964249|ref|NP_384602.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073425|emb|CAC41933.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] Length = 89 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +RL R+ G+SQE+L I V + E+G+ V S ++ ++ LE P++ F Sbjct: 8 GWNLRLLRVERGLSQERLAFEARIDRAYVGRVERGMENVTISTIEALARALEVPVAALFS 67 Query: 76 VSPTVCSD 83 S Sbjct: 68 QPDRNASQ 75 >gi|134295270|ref|YP_001119005.1| putative phage repressor [Burkholderia vietnamiensis G4] gi|134138427|gb|ABO54170.1| putative phage repressor [Burkholderia vietnamiensis G4] Length = 238 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEK----GVNRVGASRLQHISEVL 66 DI+ KRI+ +R+ G+S ++L +G+ Q VQ++EK G +LQ +++ L Sbjct: 11 DIH--KRIKAKRLEKGLSMQQLATAVGLKGWQSVQQWEKPDDEGGTAPRRDKLQKVADAL 68 Query: 67 ESPISFFFDVSPTVCS 82 + +P + Sbjct: 69 GVTAEWLQFGAPAPEN 84 >gi|261208044|ref|ZP_05922719.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565525|ref|ZP_06445973.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|260077628|gb|EEW65344.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162723|gb|EFD10575.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] Length = 87 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ +L + + +T Q V ++ G +++ +SE+L P++ F Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 78 >gi|315498461|ref|YP_004087265.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315416473|gb|ADU13114.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 70 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R G++Q L L ++ Q V E + I+ + + + F+ Sbjct: 3 NRLKDLRTEAGLTQADLAARLNVSRQAVIAIESDKHDPSLDLAYRIAAIFDLAVEAIFE 61 >gi|255281979|ref|ZP_05346534.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255267652|gb|EET60857.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 215 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 ++L R G++Q +L E GI + +Q+YE K +NR A L +++VL + Sbjct: 151 NLKLLRKRAGLTQRELAEYAGIPLRTIQQYEQRQKNINRAQAEYLVKLAKVLCCSVENLI 210 Query: 75 DVSPT 79 + P Sbjct: 211 EYVPE 215 >gi|298530359|ref|ZP_07017761.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira thiodismutans ASO3-1] gi|298509733|gb|EFI33637.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira thiodismutans ASO3-1] Length = 915 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+RL R + ++Q +L + L I+ + E+G + ++ + +L+ + F Sbjct: 7 GERVRLFRALKNLTQGQLADMLDISRHHMGCLERGESGPSFGLIRKLCTLLQVHPASLF- 65 Query: 76 VSPTVCSDISSEEN 89 +S + E Sbjct: 66 LSSDQEPEYPEESQ 79 >gi|171056856|ref|YP_001789205.1| XRE family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774301|gb|ACB32440.1| transcriptional regulator, XRE family [Leptothrix cholodnii SP-6] Length = 200 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I+ +R G++ ++ E I+ + K E G G L I+ L +S F Sbjct: 16 VGAAIKEQRQRHGLTIAQVSEQASISRGMLSKIENGQTSAGMDTLARIARALGVSMSMLF 75 Query: 75 DVSPTVCSDISS 86 S Sbjct: 76 SKYDVTASSAQH 87 >gi|89255371|ref|NP_659804.2| hypothetical protein RHE_PD00235 [Rhizobium etli CFN 42] gi|89213325|gb|AAM54817.2| hypothetical protein RHE_PD00235 [Rhizobium etli CFN 42] Length = 259 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +R R + + KL LGIT Q +YE GV+R+ SRL H+ EVL+ Sbjct: 136 LREARDKRKLPRSKLAPLLGITKQVYGRYENGVSRLTVSRLIHLCEVLD 184 >gi|71737818|ref|YP_272531.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558371|gb|AAZ37582.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|330873076|gb|EGH07225.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330986843|gb|EGH84946.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009416|gb|EGH89472.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 182 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 58 MVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|28377509|ref|NP_784401.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1] gi|308181218|ref|YP_003925346.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270341|emb|CAD63242.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1] gi|308046709|gb|ADN99252.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 RIR R LG+SQ L + G+ + E G N + + ++ L Sbjct: 6 RIRELRQKLGLSQSALADKSGVPQTTISAIESGTN-LTYETAKKLARALGVS 56 >gi|23014107|ref|ZP_00053943.1| COG3800: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 480 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 7/138 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV NKK + +G ++R R +SQ L L ++ + + E + L Sbjct: 1 MVMNKK------LFLGYKLRRLREGKKLSQAALAALLEVSPSYLNQIENNQRPLTVPVLL 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I++VL+ ++ + + E N F S GL R ++ ++++ Sbjct: 55 RIAKVLDVDLATLVEDEESRLVADLREALNDPVFGSGSIGLSELRNAAS-ASPELAKRVL 113 Query: 121 ELVRSIVSSEKKYRTIEE 138 L ++ +++ +++ E Sbjct: 114 TLYQTFRQLDERMQSLTE 131 >gi|330951980|gb|EGH52240.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] Length = 199 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 5 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 64 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 65 VLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 97 >gi|326791869|ref|YP_004309690.1| hypothetical protein Clole_2793 [Clostridium lentocellum DSM 5427] gi|326542633|gb|ADZ84492.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 73 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I R G++Q+KL E +G T ++KYE G+ S + I + L ++ ++ Sbjct: 7 NINAFRKARGITQKKLAEMIGRTESSIRKYENGMVEPPISVVIDIYKALGIKLTLTYEAI 66 Query: 78 PTVCSD 83 D Sbjct: 67 SEDGDD 72 >gi|238764873|ref|ZP_04625813.1| hypothetical protein ykris0001_37880 [Yersinia kristensenii ATCC 33638] gi|238696892|gb|EEP89669.1| hypothetical protein ykris0001_37880 [Yersinia kristensenii ATCC 33638] Length = 187 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R SQE+L E ++ + +Q+ E G L I+ V+E +S + + Sbjct: 5 RIRELRQARAWSQEQLAELCSLSVRTIQRIENGEQ-ASLETLSAIAAVMELKVSELYSLD 63 Query: 78 PTVCSDISSEE 88 D E Sbjct: 64 ANQPQDGPGEA 74 >gi|169628144|ref|YP_001701793.1| putative transcription regulator protein [Mycobacterium abscessus ATCC 19977] gi|169240111|emb|CAM61139.1| Putative transcription regulator protein [Mycobacterium abscessus] Length = 173 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++ E+LG G+T + K E+ + S I+ L+ +S F Sbjct: 5 VRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLF 60 >gi|150009363|ref|YP_001304106.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|255016216|ref|ZP_05288342.1| transcriptional regulator [Bacteroides sp. 2_1_7] gi|256842368|ref|ZP_05547871.1| transcriptional regulator [Parabacteroides sp. D13] gi|262384722|ref|ZP_06077855.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|298377851|ref|ZP_06987801.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|301312270|ref|ZP_07218187.1| DNA-binding protein [Bacteroides sp. 20_3] gi|149937787|gb|ABR44484.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256735975|gb|EEU49306.1| transcriptional regulator [Parabacteroides sp. D13] gi|262293703|gb|EEY81638.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|298265297|gb|EFI06960.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|300829692|gb|EFK60345.1| DNA-binding protein [Bacteroides sp. 20_3] Length = 193 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 39/82 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G +I+ R +S E++ E G+ +Q+++ E ++ + L I+ VL + Sbjct: 4 NKIIGAKIKNIRESKQLSIEEVAERSGLGIEQIERIEGNLDFPSLAPLIKIARVLGVRLG 63 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 F D + + ++++ D Sbjct: 64 TFLDDQAELGPVVCRKKDSEAD 85 >gi|86360646|ref|YP_472534.1| hypothetical protein RHE_PE00372 [Rhizobium etli CFN 42] gi|86284748|gb|ABC93807.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 194 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ + +L G++ + K E+G L I+ V + FF Sbjct: 15 IGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHFF 74 Query: 75 DVSPTV 80 Sbjct: 75 KADKEE 80 >gi|15672114|ref|NP_266288.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12722980|gb|AAK04230.1|AE006251_6 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] Length = 106 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R +R I G++Q++LG+ L + Q V +E G +Q ++ V + I Sbjct: 42 SNLRQKRAIAGLTQKELGKLLYSSKQAVCNWEHGRREPSLEVVQEMANVFKCSIDDLLKD 101 Query: 77 SP 78 S Sbjct: 102 SE 103 >gi|21283165|ref|NP_646253.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|300911879|ref|ZP_07129322.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21204605|dbj|BAB95301.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|300886125|gb|EFK81327.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 107 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 10/85 (11%), Positives = 33/85 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R ++ +G+ + +YE G ++ + I+ L+ + Sbjct: 7 IGKLIKQLRKENNVNLTDFAIKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYLL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + +++ ++ ++ + Sbjct: 67 LKNRQPENEVQHRAAHLEGELTDDE 91 >gi|12719398|ref|NP_075469.1| repressor [Staphylococcus phage phiSLT] gi|148267459|ref|YP_001246402.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393512|ref|YP_001316187.1| hypothetical protein SaurJH1_1044 [Staphylococcus aureus subsp. aureus JH1] gi|162290111|ref|YP_001604094.1| putative repressor protein [Staphylococcus phage phiMR11] gi|12697828|dbj|BAB21700.1| repressor [Staphylococcus phage phiSLT] gi|104641922|gb|ABF73230.1| repressor [Staphylococcus aureus phage phiNM4] gi|147740528|gb|ABQ48826.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149945964|gb|ABR51900.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|161958541|dbj|BAF95096.1| putative repressor protein [Staphylococcus phage phiMR11] gi|283469566|emb|CAQ48777.1| repressor [Staphylococcus aureus subsp. aureus ST398] gi|312438049|gb|ADQ77120.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 104 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KR++ R GM+ +LG +G T VQ+YE G + + ++ I+ L ++ Sbjct: 5 KRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAYLMG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 ++ ++ ++ + Sbjct: 65 WVEENDDEVQHRAAHLEGELTDDE 88 >gi|317491564|ref|ZP_07950000.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921111|gb|EFV42434.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 230 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R M+ +L +G + + E+G+ + L+ I++ L IS F Sbjct: 4 IGNKIRQIRKAKKMTILELANAVGSDVGNISRLERGIQGYSDAMLRKIADGLSVHISELF 63 Query: 75 DVSPTVCS 82 + Sbjct: 64 STEDDGGT 71 >gi|311107907|ref|YP_003980760.1| hypothetical protein AXYL_04732 [Achromobacter xylosoxidans A8] gi|310762596|gb|ADP18045.1| helix-turn-helix family protein 10 [Achromobacter xylosoxidans A8] Length = 184 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R +S E+L + G+T + K E+G++ S + ++E +S Sbjct: 7 RLRALRRQQTLSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGLGVSELVGTD 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ 102 D + EE + ++ + LQ Sbjct: 67 -----DAAQEEVVSVVRVADREALQ 86 >gi|300855029|ref|YP_003780013.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435144|gb|ADK14911.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +IR R ++QE+L + +T Q + E G I+++ I F F Sbjct: 8 NKIRELRKERKITQEELADFCNVTRQTIISLENGKYNPSIFLAYKIAKIFNMTIEQVFIF 67 Query: 75 DVSP 78 + Sbjct: 68 EEEE 71 >gi|295102943|emb|CBL00487.1| Helix-turn-helix. [Faecalibacterium prausnitzii SL3/3] Length = 273 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR---VGASRLQHISEVLESPISFF 73 +R++ R+ G+ E+L E GI+ + YE NR + L +++ E I + Sbjct: 9 ERLKDLRVEKGLKLEELAEKTGISKSALASYENEENRNKEINHGNLIALADFYEVSIDYL 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F + + + T + + L + Sbjct: 69 F----CRTENREQINTPLSELHLTDEAVALLKS 97 >gi|237738629|ref|ZP_04569110.1| predicted protein [Fusobacterium sp. 2_1_31] gi|229424112|gb|EEO39159.1| predicted protein [Fusobacterium sp. 2_1_31] Length = 213 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV---GASRLQHIS--EVLE 67 +++G++I+ R+ +SQ++ E +G+T + E G + + I+ E + Sbjct: 2 LHIGRKIKKFRIENNLSQKEFAEKIGVTQGFLSYVENGRLNIESPSLEKKILIAIGEAPD 61 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + F+ + + SD + M + L+ ++ + +I +V+ +V Sbjct: 62 EDLRKDFEKNVELASDNVHSPKHYMIPGCNFECKDLSDAIVRNMPNPLGTRIWNVVKYLV 121 Query: 128 SSEKK 132 +EKK Sbjct: 122 RAEKK 126 >gi|297565166|ref|YP_003684138.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849615|gb|ADH62630.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 187 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R+ G + E++ + G+ + + E+ + L + L F Sbjct: 13 IGQRLRATRLAKGFTLEQVAKRSGLDKSFISRLERDATAASVASLLKVCGALGIQPGSLF 72 Query: 75 DVSPTVCSDISSEENNVMDF 94 D P + + +EE +F Sbjct: 73 D--PPKTNLVRAEEAPSANF 90 >gi|91217921|ref|ZP_01254874.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] gi|91183898|gb|EAS70288.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] Length = 247 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK I+ R I G+SQ+ E + + YE+G + + ++ I F Sbjct: 3 FFGKNIKKIRAIKGLSQQAFAELFSLKRATLGAYEEGRSEPKIDTIIKVANYFSISIDDF 62 >gi|49478178|ref|YP_037436.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329734|gb|AAT60380.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 374 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|229606284|ref|YP_002876932.1| hypothetical protein VCD_001187 [Vibrio cholerae MJ-1236] gi|229607600|ref|YP_002878248.1| hypothetical protein VCD_002512 [Vibrio cholerae MJ-1236] gi|229607707|ref|YP_002878355.1| hypothetical protein VCD_002619 [Vibrio cholerae MJ-1236] gi|229608129|ref|YP_002878777.1| hypothetical protein VCD_003047 [Vibrio cholerae MJ-1236] gi|229368939|gb|ACQ59362.1| hypothetical protein VCD_001187 [Vibrio cholerae MJ-1236] gi|229370255|gb|ACQ60678.1| hypothetical protein VCD_002512 [Vibrio cholerae MJ-1236] gi|229370362|gb|ACQ60785.1| hypothetical protein VCD_002619 [Vibrio cholerae MJ-1236] gi|229370784|gb|ACQ61207.1| hypothetical protein VCD_003047 [Vibrio cholerae MJ-1236] Length = 69 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VGKRI R G++Q+KL I V + E+G + +L I+E L Sbjct: 9 VGKRIAKMRKSKGLTQDKLALFAEIDRSYVGRIERGEVNITIEKLYEIAETLGCD 63 >gi|167772023|ref|ZP_02444076.1| hypothetical protein ANACOL_03397 [Anaerotruncus colihominis DSM 17241] gi|167665821|gb|EDS09951.1| hypothetical protein ANACOL_03397 [Anaerotruncus colihominis DSM 17241] Length = 75 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+R R SQ +G+ LG++ QQ YEKG + L ++++ + + + Sbjct: 7 RRLRELREDHDYSQADIGKRLGMSKQQYFLYEKGYRDIPTPVLIALADLYGTSVDYL 63 >gi|17228887|ref|NP_485435.1| hypothetical protein alr1392 [Nostoc sp. PCC 7120] gi|17130739|dbj|BAB73349.1| alr1392 [Nostoc sp. PCC 7120] Length = 290 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 15/125 (12%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + G ++ R SQ L ++ + + E G + + ++ VL+ P+ Sbjct: 8 DTSFGNLLKHWRNQRSFSQLDLAVASEVSQRHISFLESGRAKPSRDMILQLATVLDVPLR 67 Query: 72 F------------FFDVSPTVCSDISSEENNVMDFISTPD---GLQLNRYFIQIDDVKVR 116 + + S S+I + + + L ++RY+ I Sbjct: 68 YQNMMLTSAGFAPIYSESDLSASEIEPIRKALDFILRQQEPYPALVMDRYWNLIQSNTAA 127 Query: 117 QKIIE 121 Q++I Sbjct: 128 QRLIN 132 >gi|110634674|ref|YP_674882.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285658|gb|ABG63717.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 100 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFF 74 G +R R+ G+SQE + E +G V E+GV V L H ++ + P Sbjct: 8 GSNLRRYRLAAGLSQEAVAERIGADRAHVSAMERGVQNVTLLTLWHTAQAVGVKPADLLA 67 Query: 75 DVSPTVCSDISSEEN 89 + T + + + Sbjct: 68 ETDSTERASGIAAPS 82 >gi|330718310|ref|ZP_08312910.1| XRE-family DNA-binding domain-containing protein [Leuconostoc fallax KCTC 3537] Length = 302 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ R +SQ L + + +T Q V K+E G +L ++E+L ++ Sbjct: 7 EQLITLRQKKKLSQHALAQKIFVTRQSVSKWENGDAEPSIDKLISLAEILNVDLNHL 63 >gi|317470458|ref|ZP_07929846.1| hypothetical protein HMPREF1011_00193 [Anaerostipes sp. 3_2_56FAA] gi|316901973|gb|EFV23899.1| hypothetical protein HMPREF1011_00193 [Anaerostipes sp. 3_2_56FAA] Length = 216 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI-- 62 KK VG+R++ RR L ++ +LG+ +G+ +Q+YE + V R I Sbjct: 2 KKEITFTAKQVGERVKERRTELNLTMPELGKRIGVNKSTIQRYE--ADGVDPKRTMIING 59 Query: 63 -SEVLESPISFFFDVSPTVCSD 83 +E L + + +S D Sbjct: 60 LAEALLTTPEWLTGLSEDKEYD 81 >gi|307243566|ref|ZP_07525713.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306493066|gb|EFM65072.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 67 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ RR LG++ +++ + LG YE G + A+ + ++++L+ I FF Sbjct: 9 IKTRRKELGLTLQQMSDSLGFKKATTYSNYENGDRIMKANMMPTLAQILQCDIMDFF 65 >gi|300723214|ref|YP_003712514.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297629731|emb|CBJ90337.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061] Length = 180 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R LG++ + L E G+T + K E+G+++ + +S L + F V Sbjct: 5 LKILRKKLGLTLDSLAEKTGMTKSYLSKVERGLSKPSIATALKLSIALNVSVEELFSVDN 64 Query: 79 TVCSDISSEENNVMDFISTPD 99 S ++ ++ + Sbjct: 65 IRQGSYSLVRSDERQMLAGSE 85 >gi|293395281|ref|ZP_06639566.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422238|gb|EFE95482.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 185 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKR+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|257454464|ref|ZP_05619724.1| bifunctional HTH-domain containing protein/aminotransferase [Enhydrobacter aerosaccus SK60] gi|257448122|gb|EEV23105.1| bifunctional HTH-domain containing protein/aminotransferase [Enhydrobacter aerosaccus SK60] Length = 557 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+ R G++ +L + + ++ + +E+G N + +++L ++ +L Sbjct: 10 GQRLTQLRKSKGLTTAELADLMTQAGAKVSRAAISNWERGSNGIVSNKLPVLASLLGCSE 69 Query: 71 SFFFDVSPTVCSDISSEE 88 S+ + +++++ Sbjct: 70 SYLLSGTGVESHNVNTQA 87 >gi|229488922|ref|ZP_04382788.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229324426|gb|EEN90181.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 208 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 9/109 (8%) Query: 2 VGNKKIPNPVDI---NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 N P+ +D +G R++ R ++ L E GI+ + + E G R Sbjct: 13 TMNVNGPH-IDAAISQIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLEL 71 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENN-----VMDFISTPDGLQ 102 L I+ + P+ I S + V+ P GLQ Sbjct: 72 LLPIALAHQVPLDQLVAAPQVADPRIQSAPRSVSGRTVLPLTRQPGGLQ 120 >gi|229019722|ref|ZP_04176528.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] gi|229025948|ref|ZP_04182338.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228735349|gb|EEL85954.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228741567|gb|EEL91761.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|229173997|ref|ZP_04301534.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] gi|228609506|gb|EEK66791.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] Length = 374 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDK 63 Query: 73 FFDVSPTVCSDISSE 87 +P + + E Sbjct: 64 LICYTPQMEQEAIRE 78 >gi|225869491|ref|YP_002745438.1| DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|225698895|emb|CAW91878.1| putative DNA-binding protein [Streptococcus equi subsp. equi 4047] Length = 120 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ +SQ+ L E L I+ Q + K+E G L ++ VLE + Sbjct: 6 EQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLDELVTG 65 Query: 77 SPTVCSDISSEEN--NVMDFIS 96 I E NV +F++ Sbjct: 66 KEPAIKVIKKTEKPMNVWEFLT 87 >gi|225568758|ref|ZP_03777783.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM 15053] gi|225162257|gb|EEG74876.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM 15053] Length = 205 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 32/82 (39%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ N + G I+ R G +Q +L E + ++ + V K+E G + ++ Sbjct: 7 KERGNIMSYVTGSIIKELRERKGYTQRQLAESVCVSDKTVSKWETGKGLPDVGIITELAS 66 Query: 65 VLESPISFFFDVSPTVCSDISS 86 L ++ + + S Sbjct: 67 ALGVSLAELLNGEYAENRNRSG 88 >gi|218689855|ref|YP_002398067.1| putative repressor protein CI [Escherichia coli ED1a] gi|260870771|ref|YP_003237173.1| putative repressor protein CI [Escherichia coli O111:H- str. 11128] gi|218427419|emb|CAR08317.2| putative repressor protein CI [Escherichia coli ED1a] gi|257767127|dbj|BAI38622.1| putative repressor protein CI [Escherichia coli O111:H- str. 11128] gi|323177632|gb|EFZ63217.1| helix-turn-helix family protein [Escherichia coli 1180] Length = 230 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + L +I+ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQALSNIARSLGVDIA 60 Query: 72 FFF 74 F Sbjct: 61 DLF 63 >gi|149178990|ref|ZP_01857565.1| DNA-binding protein [Planctomyces maris DSM 8797] gi|148842189|gb|EDL56577.1| DNA-binding protein [Planctomyces maris DSM 8797] Length = 205 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G++ P+ + + +R+R R G S + L G++ + + E+G + Sbjct: 14 TGSELSPDEISGQLSQRVRELRKERGWSLDSLSAACGVSRSMLSQIERGEANPTLAVTVR 73 Query: 62 ISEVLESPISFFFDVS-PTVCSDISSEENNVMDFISTPD 99 IS+ + + T ++ E+ + S + Sbjct: 74 ISQAFGIALGELVEAPVSTSAIEVIRAEDRTFHYRSDDE 112 >gi|116617966|ref|YP_818337.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096813|gb|ABJ61964.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 275 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFFDVS 77 I+ +R + MSQ +LG+ +G + V + E G A + + LE + +F+ + Sbjct: 9 IKEKRKLRNMSQAQLGDIVG-SQAMVSRIENGQILPNAQTIFILCNKLEITVEEYFYSIF 67 Query: 78 PTVCSDIS 85 + + Sbjct: 68 GPDQNTTT 75 >gi|260461784|ref|ZP_05810030.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|319785325|ref|YP_004144801.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032425|gb|EEW33690.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|317171213|gb|ADV14751.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 72 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ ++ R ++QE+L + G + Q + EKG + ++ L Sbjct: 5 KLIGRNVQRIRQRKRLTQEQLADISGFSQQYISGLEKGRRNPTIITIYELALALGVS 61 >gi|229163492|ref|ZP_04291443.1| Transcriptional regulator, Xre [Bacillus cereus R309803] gi|228620061|gb|EEK76936.1| Transcriptional regulator, Xre [Bacillus cereus R309803] Length = 190 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|255093201|ref|ZP_05322679.1| putative regulatory protein [Clostridium difficile CIP 107932] Length = 103 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR++ R ++ ++ +G++ + + E G +L Sbjct: 3 YIGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVL 62 Query: 74 F-DVSPTVCSDISSEENNVMDFISTPD 99 D++ T + + ++ N + +++ + Sbjct: 63 IKDITSTGKTYLENDINEELKDLNSRE 89 >gi|254410170|ref|ZP_05023950.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC 7420] gi|196183206|gb|EDX78190.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC 7420] Length = 75 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R RR LG SQE+L E G+ V E+G + + + E L+ S Sbjct: 8 GADVRARREELGFSQEQLAELAGMHRTYVGSIERGERNISLENIVKLCEALQIKPSSLMG 67 Query: 76 VSPTVCS 82 + Sbjct: 68 SLDEFVN 74 >gi|182625365|ref|ZP_02953138.1| putative helix-turn-helix domain protein [Clostridium perfringens D str. JGS1721] gi|177909362|gb|EDT71814.1| putative helix-turn-helix domain protein [Clostridium perfringens D str. JGS1721] Length = 224 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 ++I R G+S+ +L +G++ + K E G I+ LE P++ F + Sbjct: 5 EKITFYREKKGISKSQLAREIGVSPAYITKLENGEKTNPSLELKVKIANALEQPLTVFLE 64 Query: 76 VSPT 79 +PT Sbjct: 65 NNPT 68 Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP + N+G +I+ +++ + +L E GI Q++ + G L+ IS+ L+ Sbjct: 66 NPTN-NIGSKIKSAKILNNLDDNQLSEITGIDKLQLRSIQDGQVNPTKMELEIISKALKL 124 Query: 69 PISFFFDVSPTVCSDISSEEN 89 P ++F S ++ + E+ Sbjct: 125 PTNYFTKDSTININETGNIED 145 >gi|162148576|ref|YP_001603037.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787153|emb|CAP56745.1| putative transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 77 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+SQE L E +G+ + E G L H S+ L + D Sbjct: 8 GANVRRLRRAAGLSQEVLAERMGVDRAYISWIETGRQNATLLSLWHASQALNVRPAALLD 67 Query: 76 VSPTVCSD 83 + D Sbjct: 68 ENQVPADD 75 >gi|148380241|ref|YP_001254782.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|148289725|emb|CAL83830.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] Length = 79 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E I++V I F F Sbjct: 4 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVFLF 63 Query: 75 DVSP 78 + S Sbjct: 64 EESE 67 >gi|313585026|gb|ADR70745.1| hypothetical transcriptional repressor [Xanthomonas citri subsp. citri] Length = 108 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ++LG G + +V +YE+G + + +++ L P +F Sbjct: 13 RRLQQARLHTGLSQKELGIRAGLDPYVASPRVNQYERGKHEPKLETAERLAQALGIPAAF 72 Query: 73 FF 74 + Sbjct: 73 LY 74 >gi|254293850|ref|YP_003059873.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042381|gb|ACT59176.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 474 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 11/109 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-- 70 + +G +IR R+ M+Q+ E L ++ + + E V A L +++ + Sbjct: 11 LFIGHKIREARLKNQMTQKAFAEALNVSTSYLNQLENNQRHVTAGILLALAQTFGLDLKT 70 Query: 71 ------SFFFDVSPTVCSDISSEENNVMD---FISTPDGLQLNRYFIQI 110 F+ D S + + + ++ Q + Q+ Sbjct: 71 LGGRESDILFNELKEASKDELSHLSEITERELALAVKHAPQFAAAYSQL 119 >gi|160875086|ref|YP_001554402.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160860608|gb|ABX49142.1| transcriptional regulator, XRE family [Shewanella baltica OS195] Length = 105 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES--PISFFF 74 +++ R + +Q+ +G+ +G++ + +YE G+ ++ S+ + L F Sbjct: 11 NKLKHYRNAINATQKDVGDIVGVSQSSIDRYESGIRKLNTSKAWEMVNALNRLGSSCSFT 70 Query: 75 DVSPTVCSDISSEENNVMD 93 DV P + N D Sbjct: 71 DVFPDPLECVPHAVNQSND 89 >gi|149203901|ref|ZP_01880869.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142343|gb|EDM30388.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 133 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R+ R GMSQ L + LG+ + ++ +E ++ A++L ++ +L + + Sbjct: 18 GDRVTGARERSGMSQSDLAKRLGVKLKTLKAWENDLSEPRANKLSMMAGMLNVSLLWLLS 77 Query: 75 -DVSPTVCSDISSEENNVMDFIS 96 + ++ +VMD ++ Sbjct: 78 GEGEGPGAPEMGELSRDVMDMLT 100 >gi|91783413|ref|YP_558619.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687367|gb|ABE30567.1| Predicted transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 152 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G I RR LGM+QE+L E + I + + E+G RL I+E LE ++ Sbjct: 31 RSIGAAIAARRKALGMTQERLSELIQIEQSSLSRIERGTLIPSLERLASIAEELECGLAD 90 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 F V D ++ + + ++ Sbjct: 91 LFYVGGVNSHDRAARVHEKLSHLT 114 >gi|332199304|gb|EGJ13382.1| transcriptional activator [Streptococcus pneumoniae GA41317] Length = 303 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|330964277|gb|EGH64537.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 182 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 58 MVEFFSEETVPENSAQVVYKASELIDISDGAMTMKLV 94 >gi|325917947|ref|ZP_08180117.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] gi|325535849|gb|EGD07675.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] Length = 113 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R+R R ++QE LG G + ++ +YEKGVN + +++ L P++ Sbjct: 12 NRLRHARQKAELTQEALGVAAGLATEVARTRINRYEKGVNECDLRTAKRLADALGMPLAA 71 Query: 73 FFDVSPTVCSDISS 86 FF + V I + Sbjct: 72 FFAETDEVADAIQA 85 >gi|325264311|ref|ZP_08131042.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030382|gb|EGB91666.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 139 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++VG I+ R G++Q++L E G +++YE +L I+ +L Sbjct: 1 MSVGDNIKKARKNAGLTQKELAEKCGAAEITIRQYESSKREPRNEQLMKIARLLNV 56 >gi|258591600|emb|CBE67901.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 352 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 R G++Q +L +G + ++ K E G+ + L+ +S L+ P FFF Sbjct: 14 RESRGLTQSELATKVGASQARISKIEAGLLPLSDEMLKTLSSALDYPEHFFFQDED 69 >gi|284920570|emb|CBG33632.1| regulatory protein cro (antirepressor) [Escherichia coli 042] Length = 71 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ RR+ L M+Q +L G+ Q +Q E GV + L I+ L + Sbjct: 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK-RPRFLFEIAMALNCDPVWL 61 >gi|257888764|ref|ZP_05668417.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257824818|gb|EEV51750.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 72 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 26/57 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RIR R ++Q+++ + L ++ +YE G + + ++ + + + Sbjct: 3 QRIRDLREDNDLTQQQIAKLLNVSQSTYSRYENGELDIPMKTVIKLAHYYNTSVDYL 59 >gi|239943369|ref|ZP_04695306.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989822|ref|ZP_04710486.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291446837|ref|ZP_06586227.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349784|gb|EFE76688.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 213 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 8/110 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R GM+ +L E GI + + E G + L ++EV P+ Sbjct: 24 VGPRLRELRRRHGMTLAELAERTGINESTLSRLEGGTRKPTLELLLPLAEVHAVPLDELV 83 Query: 75 D----VSPTVCSDISSEENNVMDFISTPDGLQ----LNRYFIQIDDVKVR 116 P + + + +S P G+Q L R + +R Sbjct: 84 GAPRTGDPRIHLRPVTRDGLTYVPLSRPGGVQAHKLLIRPSPAGTEPTLR 133 >gi|226310396|ref|YP_002770290.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226093344|dbj|BAH41786.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 419 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VG + R +S +L E + I+ + K E G R G S+ + I+ L P Sbjct: 3 MEVGDLLHAYRQRRNISLSELAERIDISKAALSKIESGETKRPGFSQWKKIASALNIP-- 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + E V + + L+LN Sbjct: 61 ----HVDVITAYLDTTERPVTLQLLLKEALELN 89 >gi|222101967|ref|YP_002546557.1| transcriptional regulator, HTH_3 family [Agrobacterium radiobacter K84] gi|221728084|gb|ACM31093.1| transcriptional regulator, HTH_3 family [Agrobacterium radiobacter K84] Length = 359 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ + R G++ ++L +GI + V YE G + +S +L+ P+SFF Sbjct: 5 SRLTVARQRAGLTMKELASKVGIEPRAVTGYEAGEYLPSEETARKLSRILQFPLSFFM 62 >gi|209808838|ref|YP_002274409.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880761|ref|ZP_05660414.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257892131|ref|ZP_05671784.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257895013|ref|ZP_05674666.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562585|ref|ZP_05833093.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528675|dbj|BAG74976.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814989|gb|EEV43747.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257828491|gb|EEV55117.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257831392|gb|EEV57999.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073095|gb|EEW61442.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 260 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEV 65 PNP GKRI+ R+ G + E+LG + + + +E+G N +L+ +S + Sbjct: 2 KPNP--SEAGKRIKQLRLSCGFTMEELGRKIDNSPRATISNWERGTNLPNPQKLKLLSTI 59 Query: 66 LESPISF 72 S I + Sbjct: 60 TNSTIDW 66 Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEV 65 P+P VG++IR R LG++ ++ G + + V +E G N ++L+ I+++ Sbjct: 145 KPDP--KKVGRKIRSIRKKLGLTMQEFGYEVSNSPRSTVSTWEHGGNLPNKAKLKKIADI 202 Query: 66 LESPI-SFFFD 75 + FD Sbjct: 203 ANCSVEDLLFD 213 >gi|170017857|ref|YP_001728776.1| Cro/CI family transcriptional regulator [Leuconostoc citreum KM20] gi|169804714|gb|ACA83332.1| Transcriptional regulator, Cro/CI family [Leuconostoc citreum KM20] Length = 84 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR +SQ+ L + +T Q + E + ++ +LE+ + F S Sbjct: 21 IRKRRKERHLSQDMLAQKANVTRQTINAIENAKYDPSLALAFKLATILETTVDQLFTKSE 80 Query: 79 TV 80 Sbjct: 81 DE 82 >gi|149019378|ref|ZP_01834740.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae SP23-BS72] gi|147931248|gb|EDK82227.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae SP23-BS72] Length = 69 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRYLGKTLDQLF 62 >gi|124008127|ref|ZP_01692825.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] gi|123986375|gb|EAY26188.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] Length = 269 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 7/128 (5%) Query: 13 INVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + K ++ R G +QE L LGIT + YE G + I++ + Sbjct: 1 MFLSKNLKHLRERNGKQTQENLANALGITRSAISSYEDGRAEPKLVVMNRIAQYFNITLD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV--RSIVSS 129 +V D+ ++ + ++ + L++ I + + IELV ++ Sbjct: 61 QLLNVELATLGDVDLQQQKEVKKYASAENLRIL----TITTDRENNENIELVPEKAAAGY 116 Query: 130 EKKYRTIE 137 K Y E Sbjct: 117 TKGYADAE 124 >gi|117623603|ref|YP_852516.1| putative regulator [Escherichia coli APEC O1] gi|115512727|gb|ABJ00802.1| putative regulator [Escherichia coli APEC O1] Length = 139 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFF 73 + R++ RR LG+SQ KL E G T ++ YE G VG + + L P Sbjct: 17 IAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 F + ++ + +++ Sbjct: 77 FGEKDSSELWLNESQRKLLELF 98 >gi|66045512|ref|YP_235353.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63256219|gb|AAY37315.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] gi|330943855|gb|EGH46095.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 201 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 7 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 66 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 67 VLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 99 >gi|56478434|ref|YP_160023.1| anaerobic benzoate catabolism transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56314477|emb|CAI09122.1| Putaive regulator of anaerobic benzoate metabolic operon consisting of shikimate kinase-like domain and a Helix-turn-helix domain [Aromatoleum aromaticum EbN1] Length = 285 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R GM+++ L + G++ + + + E G + L+ I+ + P+ Sbjct: 12 LGERIRELRARRGMTRKALAQQSGVSERYLAQLETGHGNISIILLRQIALGMGLPLVDLV 71 Query: 75 DVSPTVCSDISSEENNVMDF 94 P +++ + F Sbjct: 72 REEPEQPPELTLLMQYLSRF 91 >gi|330947178|gb|EGH47918.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 75 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + P PV +V + +R R +SQ L E G++ + + E G V + L + Sbjct: 8 ENSQRP-PVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRV 66 Query: 63 SEVLES 68 +E LE Sbjct: 67 AEALEV 72 >gi|312864376|ref|ZP_07724609.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100097|gb|EFQ58308.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 135 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 36/79 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++++ R++ ++QE++ + LG++ Q V +E+G L +S + + Sbjct: 2 MAVGQQLQSARLLSDLTQEEVADSLGVSRQTVSNWERGKTYPDIVSLIALSNLYHLSLDQ 61 Query: 73 FFDVSPTVCSDISSEENNV 91 + + + V Sbjct: 62 LVKGDEAMVKHLEKTTDLV 80 >gi|296110909|ref|YP_003621290.1| transcriptional regulator, Cro/CI family [Leuconostoc kimchii IMSNU 11154] gi|295832440|gb|ADG40321.1| transcriptional regulator, Cro/CI family [Leuconostoc kimchii IMSNU 11154] Length = 192 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 10/113 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYE----KGVNRVGASRLQHISEVLESPISF 72 RI R SQ +L E LG+T Q + YE KG + +++ I + Sbjct: 2 NRISELRKETNTSQTELAELLGVTRQAISLYEKWPDKGGREPKLETWKKLADHFGVYIGY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 VS +D + ++ D + L + + +D + +K++E ++S Sbjct: 62 IQGVSDIRKNDYTGLASSDNDVL-----LNIIDELYK-NDNRADKKLVEYIKS 108 >gi|294086041|ref|YP_003552801.1| putative XRE family transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665616|gb|ADE40717.1| putative transcriptional regulator, XRE family [Candidatus Puniceispirillum marinum IMCC1322] Length = 486 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 29/160 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG ++R R +G+SQ + E L I+ + E + + L + + + Sbjct: 5 ILVGHKLRRFRQSIGLSQTAMSEALDISPSYLNLLEHNQRPLTVTLLLKLGNSFDIDLKS 64 Query: 73 FFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV---------KVRQKI 119 F + S+I ++ + +S + L KVR ++ Sbjct: 65 FAEDDSQSLIADMSEIFTDPLFTGEAVSRRELQDLISAAPGAARSVIKLFHAYRKVRDEL 124 Query: 120 ----------------IELVRSIVSSEKKYRTIEEECMVE 143 IELVR ++ SE Y E+ E Sbjct: 125 QSSDHVAGREARLSSPIELVRDVLQSENNYFASVEQAATE 164 >gi|291561595|emb|CBL40394.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 157 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 45/111 (40%), Gaps = 6/111 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G SQ +L + + ++ V +E ++ G + L ++ + E + ++ Sbjct: 6 LRTLRAEKGFSQGQLAKAINVSPGNVSDWETDKSKPGYNALAALARIFEVSADYLLELDV 65 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKIIELV 123 + + + + DG LN ++ + +++I +L+ Sbjct: 66 SPEKKGVDLSDYKNEQGLSCDGSPLNAMEADVVAMFRLLPERHQEEIFDLI 116 >gi|229826250|ref|ZP_04452319.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] gi|229789120|gb|EEP25234.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] Length = 220 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K I R +G++Q++L + +G++ + + K+E G + S + + L ++ Sbjct: 6 ISKFIATTRTKIGLTQKELADKIGVSDKTISKWETGKSLPDISYYESLCNALNIKVN 62 >gi|152995548|ref|YP_001340383.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150836472|gb|ABR70448.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 176 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ ++G+ I+ RM G+S +L G+ + + E+G + ++ L P Sbjct: 4 PILGSLGRNIQKMRMAKGLSLSQLALDAGLAKSNLSRIEQGEGNPTLETIWRLAVQLNVP 63 Query: 70 ISFFFDVSPTVCSDISS 86 F D+ TV S + Sbjct: 64 ---FGDLVATVESTLGE 77 >gi|78224438|ref|YP_386185.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195693|gb|ABB33460.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 187 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G +I+ R+ ++ + + G + + + E + L I++ + IS F Sbjct: 5 NIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLF 64 Query: 74 FDVSPTV 80 F Sbjct: 65 FSEDEEE 71 >gi|73661492|ref|YP_300273.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494007|dbj|BAE17328.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 181 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 11/90 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V K I R +S +K+ G++ + + EKG + + L I+ L +S Sbjct: 8 VAKNIADYRKKHQLSLDKVANATGVSKNMLSQIEKGQSNPTITTLWKIANGLHISLS--- 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++S N+ +DFI D + L Sbjct: 65 --------QLTSTSNDTIDFIDESDIIPLI 86 >gi|325000344|ref|ZP_08121456.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 196 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 8/101 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+ R GM+ L E GI+ + + E G R L ++ + P+ Sbjct: 12 VGPRLAGLRSERGMTLADLSEATGISVSTLSRLESGGRRPTLELLLPLATAHQVPLDELV 71 Query: 75 DVSP-----TVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P + V+ P GLQ F I Sbjct: 72 AAPPVGDPRVRLRPRRVHGSTVVPLTERPGGLQ---AFKMI 109 >gi|317500517|ref|ZP_07958740.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331089383|ref|ZP_08338282.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898106|gb|EFV20154.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330404751|gb|EGG84289.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium 3_1_46FAA] Length = 118 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R G+ Q L E + ++ Q + + E G N + + L H+S+ + Sbjct: 4 NRVKELRTERGLRQGDLAEKMNVSQQTISRIENGENVLPSDILIHLSKYFHVSTDY 59 >gi|312130063|ref|YP_003997403.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311906609|gb|ADQ17050.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 255 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V + I++ R +G++QEKL LGI + V YE+ +L ++ + + Sbjct: 3 YVNENIKVLRNRMGLTQEKLAALLGINRKAVGSYEENRATPPLDKLNRLASLFGVSMDQL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + S + E+ + + L Sbjct: 63 IHHRFSTESPLFEEQAPEVPTEVVKEAPALI 93 >gi|312881391|ref|ZP_07741188.1| transcriptional regulator, Cro/CI family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309371031|gb|EFP98486.1| transcriptional regulator, Cro/CI family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 176 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +DI +G+ ++ R+ G+S +L GI + + E+G L ++ L+ P Sbjct: 5 SLDI-LGRNLQSIRVSKGLSLSQLAHDAGIAKSNLSRIEQGSGNPTLDTLWRLAIQLDVP 63 Query: 70 ISFFFDVSPTVCSDIS 85 T Sbjct: 64 FGCLVASMNTAIGHDG 79 >gi|307709978|ref|ZP_07646425.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619349|gb|EFN98478.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 114 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGKRI+ R+ ++Q+K+ E L + + K EKG + + ++ +S + + + Sbjct: 9 VGKRIKELRISSNLTQDKIAEYLSLNQSMIAKMEKGERNITSDVIEKLSALFCCTVEYL 67 >gi|326793247|ref|YP_004311068.1| hypothetical protein Clole_4198 [Clostridium lentocellum DSM 5427] gi|326544011|gb|ADZ85870.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 143 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + ++ R G +QE++ L + Q + K+EKG++ A L I+ + + +S Sbjct: 4 ENLKALRKTKGFTQEEIAIRLNVVRQTISKWEKGLSIPDADILIKIAALFDVSVS 58 >gi|289624831|ref|ZP_06457785.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647732|ref|ZP_06479075.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 199 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 8/99 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESP 69 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P Sbjct: 16 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIP 72 Query: 70 ISF--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +S FF + P + + + + ++D ++L Sbjct: 73 MSMVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLV 111 >gi|261208780|ref|ZP_05923217.1| replication initiation factor [Enterococcus faecium TC 6] gi|289565535|ref|ZP_06445982.1| replication initiation factor [Enterococcus faecium D344SRF] gi|294614440|ref|ZP_06694356.1| replication initiation factor family [Enterococcus faecium E1636] gi|294617958|ref|ZP_06697563.1| putative phage replication protein [Enterococcus faecium E1679] gi|260077282|gb|EEW65002.1| replication initiation factor [Enterococcus faecium TC 6] gi|289162617|gb|EFD10470.1| replication initiation factor [Enterococcus faecium D344SRF] gi|291592748|gb|EFF24341.1| replication initiation factor family [Enterococcus faecium E1636] gi|291595767|gb|EFF27055.1| putative phage replication protein [Enterococcus faecium E1679] Length = 410 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 9 NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N V+ + +G+ IR+ R G +Q L E +GI+ + K EKG ++ +L + + L+ Sbjct: 2 NQVNQHDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRQLSEEKLNLVLDSLQ 61 Query: 68 ---SPIS 71 P++ Sbjct: 62 EEVVPVN 68 >gi|254723300|ref|ZP_05185088.1| DNA-binding protein [Bacillus anthracis str. A1055] Length = 374 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|229199676|ref|ZP_04326321.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] gi|228583822|gb|EEK41995.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] Length = 61 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R ++QE+L +GIT + E G ++ ISEVL S + F Sbjct: 2 NQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIF 59 >gi|227879298|ref|ZP_03997165.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256844478|ref|ZP_05549964.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|262047150|ref|ZP_06020108.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|227861093|gb|EEJ68745.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256613556|gb|EEU18759.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|260572395|gb|EEX28957.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 96 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 37/85 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R ++Q +L E +G+T + + EKG + + + E+ I Sbjct: 2 MIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIET 61 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 F ++ V ++ + N F + Sbjct: 62 LFCLNEYVKNEQAKGRNAYNSFCDS 86 >gi|227508605|ref|ZP_03938654.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191937|gb|EEI72004.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 184 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++++R SQ +L E L I+ Q + K+E+ V + + IS++ + + Sbjct: 1 MKIGKVLQVQREKRHWSQAELAEKLSISRQSISKWEQEVALPSFANVVAISDLFKISLDD 60 Query: 73 FFDVSPTVCSDIS 85 + +S Sbjct: 61 LIKGDDKLMDKLS 73 >gi|149203921|ref|ZP_01880889.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149142363|gb|EDM30408.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 207 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G P P+D +G R+R R G + E+ + G+ + K E G L+ Sbjct: 16 TGGAAAPEPLD--LGARVRSLRKARGWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKK 73 Query: 62 ISEVLESPISFFF 74 +++ LE + F Sbjct: 74 LAQGLEISVPQLF 86 >gi|89212744|gb|ABD63852.1| putative repressor [Lactococcus phage phismq86] gi|326407702|gb|ADZ64773.1| phage repressor [Lactococcus lactis subsp. lactis CV56] Length = 136 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 16/99 (16%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF----- 73 ++ R G++ ++L E +G T + ++E G N + +++ ++ Sbjct: 12 VKTLRQQAGLTMKQLAEKMGKTESAISRWESGDNSPKLEDINALADFFNVDMNTLVYGAG 71 Query: 74 -------FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 FD+S +D ++ V D + + G L Sbjct: 72 VVPKNEPFDISKLANTD----DDAVWDKLVSSGGRPLTE 106 >gi|119967867|ref|YP_950697.1| putative cI-like repressor [Staphylococcus phage PH15] gi|112790031|gb|ABI21751.1| putative cI-like repressor [Staphylococcus phage PH15] gi|329736005|gb|EGG72280.1| putative HTH-type transcriptional regulator AnsR [Staphylococcus epidermidis VCU045] Length = 107 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 11/85 (12%), Positives = 31/85 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R ++ +G+ + +YE G ++ + I+ L Sbjct: 7 IGKLIKQLRKENNINLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALNVTPESLL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 + ++I ++ ++ + Sbjct: 67 LKNKQPETEIQHRAAHLEAELTDDE 91 >gi|110799647|ref|YP_695478.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110803761|ref|YP_698224.1| transcriptional regulator [Clostridium perfringens SM101] gi|169346849|ref|ZP_02865797.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|110674294|gb|ABG83281.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110684262|gb|ABG87632.1| transcriptional regulator [Clostridium perfringens SM101] gi|169296908|gb|EDS79032.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 69 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R + MSQ +L + +G+ Q + E I++ L + ++ F V Sbjct: 2 NKIKEYRSLANMSQLELSKKVGVARQTINLIENQKYNPSLDLCIRIAKALGTDLNTLFWV 61 Query: 77 SPTVCSD 83 + D Sbjct: 62 NEEERED 68 >gi|42780878|ref|NP_978125.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42736799|gb|AAS40733.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 403 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDEGEVVEL 72 >gi|322375869|ref|ZP_08050380.1| putative toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] gi|321279137|gb|EFX56179.1| putative toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] Length = 111 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIRL R+ ++Q++L E + + K E + LQ I + L++ I F Sbjct: 9 YLGKRIRLLRLQKNLTQQQLEELADLPLKYTYKLENLEPNIKIKTLQKIMDALDTDIETF 68 Query: 74 FDVSPTVCSDI 84 FD+S T + + Sbjct: 69 FDISVTESNPL 79 >gi|300853248|ref|YP_003778232.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300433363|gb|ADK13130.1| putative DNA binding protein [Clostridium ljungdahlii DSM 13528] Length = 67 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPI-SFF 73 G +I+L+R+ G+ Q +L +GI+ +Q EKG + ++ IS+ L+ P+ F Sbjct: 2 GLKIKLKRIERGIKQYELANKVGISRYYMQLLEKGKAKNPSIAVMKAISKELDMPVQDLF 61 Query: 74 FDVSPT 79 F+ Sbjct: 62 FNDEEE 67 >gi|228934608|ref|ZP_04097442.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825001|gb|EEM70799.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 374 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R G++QE+L +GIT V K+E G + + L ++ I P Sbjct: 10 IADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELISYKP 69 Query: 79 TVCSD 83 + + Sbjct: 70 QMEQE 74 >gi|229092281|ref|ZP_04223456.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] gi|228691098|gb|EEL44864.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] Length = 374 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|300774465|ref|ZP_07084328.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300506280|gb|EFK37415.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 189 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 4/99 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ R ++ +L ++ V + E G L + + LE S+FF Sbjct: 8 IGKRLKDIRKKNNLTINELAFKANVSNGLVSRIENGRTIPSLPVLLDLIQSLEIDASYFF 67 Query: 75 DVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFIQ 109 + + + E V++ +G + F + Sbjct: 68 EGVEKKSNAKFIYVPKESQQVIEKEVEAEGFRYMHIFSK 106 >gi|224583844|ref|YP_002637642.1| hypothetical protein SPC_2069 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468371|gb|ACN46201.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 200 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +RI+ R MS ++L G++ + + E + L I+ + + Sbjct: 18 INEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSV 77 Query: 71 SFFFDVSPT 79 + F +V+ Sbjct: 78 ADFVNVASE 86 >gi|206601889|gb|EDZ38371.1| Putative transcriptional regulator, XRE family [Leptospirillum sp. Group II '5-way CG'] Length = 121 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ K I N D + +G RIR R MSQ E LGI +++ ++E G L Sbjct: 1 MIYQKGIDNNWDPLGLGARIRHLRG--NMSQTAFAELLGIRQEEISRFESGSRVPSVELL 58 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVM 92 +S + + + + + EE+ + Sbjct: 59 VRLSGIHKVTLDWLVMGGTSGGEGSVREEDTPL 91 >gi|153933321|ref|YP_001384546.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935529|ref|YP_001388062.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|152929365|gb|ABS34865.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931443|gb|ABS36942.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 78 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E I++V I F F Sbjct: 3 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESE 66 >gi|126698979|ref|YP_001087876.1| putative phage regulatory protein [Clostridium difficile 630] gi|254974925|ref|ZP_05271397.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092314|ref|ZP_05321792.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255100395|ref|ZP_05329372.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255306340|ref|ZP_05350511.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|255314052|ref|ZP_05355635.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255516732|ref|ZP_05384408.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255649831|ref|ZP_05396733.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|260682989|ref|YP_003214274.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260686587|ref|YP_003217720.1| putative phage regulatory protein [Clostridium difficile R20291] gi|306519931|ref|ZP_07406278.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] gi|115250416|emb|CAJ68238.1| Transcriptional regulator, Phage-type [Clostridium difficile] gi|260209152|emb|CBA62363.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260212603|emb|CBE03613.1| putative phage regulatory protein [Clostridium difficile R20291] Length = 139 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 6/101 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R + Q +L E LG + K+E+ + + L+ I+E+ + + Sbjct: 4 LGERIVYLRKAKNLKQYELEEMLGCDN--LSKFERNIRKPNYEILKSIAEIFNVSVDWLL 61 Query: 75 DVSPTVCSDI---SSEENNVMDFISTPDGLQLNRYFIQIDD 112 + S N ++ I++ + ++L F +++D Sbjct: 62 NGDNLSHKSDLICDSSSNYPLNSINSNE-IKLLNNFRKLND 101 >gi|56413411|ref|YP_150486.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362334|ref|YP_002141971.1| hypothetical protein SSPA1132 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127668|gb|AAV77174.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093811|emb|CAR59293.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 200 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +RI+ R MS ++L G++ + + E + L I+ + + Sbjct: 18 INEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSV 77 Query: 71 SFFFDVSPT 79 + F +V+ Sbjct: 78 ADFVNVASE 86 >gi|16760810|ref|NP_456427.1| regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25512966|pir||AG0738 probable regulator STY2066 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503107|emb|CAD05610.1| putative regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|323977012|gb|EGB72099.1| helix-turn-helix protein [Escherichia coli TW10509] gi|324012832|gb|EGB82051.1| helix-turn-helix protein [Escherichia coli MS 60-1] Length = 139 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 13/106 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFF 73 + R++ RR LG+SQ KL E G T ++ YE G VG + + L P Sbjct: 17 IAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 F E + +L F Q+ + ++ I Sbjct: 77 FG------------EQESSELWLNESQRKLLELFNQLPGSEQQRMI 110 >gi|331271170|ref|YP_004385879.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] gi|329127665|gb|AEB77607.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] Length = 121 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R +SQ++ G+ LGI + + ++E G + + L IS+V Sbjct: 5 QKIQKLRKAKKLSQKEFGKKLGIHDEIILQWESGTSYPSINELIKISDVFNITTDSLLKD 64 Query: 77 SPTVCSD 83 + D Sbjct: 65 NINEYED 71 >gi|326942288|gb|AEA18184.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 190 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPIS 71 I++ L P+S Sbjct: 61 WKITKGLSIPLS 72 >gi|313899139|ref|ZP_07832664.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956079|gb|EFR37722.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 65 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R + ++QE+L E + +T Q + EKG + I VL ++ F Sbjct: 6 KLKAARAAMDLTQEQLAEKVSVTRQTINAIEKGDYNPSINLCITICRVLGKTLNDLF 62 >gi|296504980|ref|YP_003666680.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|296326032|gb|ADH08960.1| transcriptional regulator [Bacillus thuringiensis BMB171] Length = 190 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 11/117 (9%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGEANPTLAVI 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD---------FISTPD-GLQLNRY 106 I++ L P+S V E V + F T + G++++R Sbjct: 61 WKITKGLSIPLSRLMVAGEPVAVARCGEGFAVDEGQAWHLETMFRYTKETGMEMHRA 117 >gi|260886811|ref|ZP_05898074.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330839382|ref|YP_004413962.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260863410|gb|EEX77910.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329747146|gb|AEC00503.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 82 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +G+RI R + G+SQE+ + +GI+ + K E+G + + + I+ LE+ ++ Sbjct: 15 RILGQRIAYYRKLQGLSQEEFSKDVGISKSYLSKIERGDIQGISFVTVMEIARSLEAKVT 74 Query: 72 FFFDVSPT 79 D Sbjct: 75 KLLDFDEA 82 >gi|302562106|ref|ZP_07314448.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302479724|gb|EFL42817.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 194 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+PVD+ +G R+ R+ G S +L E GI+ + + E+ AS L + V Sbjct: 9 APDPVDVRLGGRLAELRIEHGWSLGELAERSGISRSTLSRAERAETSPTASLLNRLCAVY 68 Query: 67 ESPIS 71 +S Sbjct: 69 GRTMS 73 >gi|238911950|ref|ZP_04655787.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 200 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +RI+ R MS ++L G++ + + E + L I+ + + Sbjct: 18 INEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSV 77 Query: 71 SFFFDVSPT 79 + F +V+ Sbjct: 78 ADFVNVASE 86 >gi|229829910|ref|ZP_04455979.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles DSM 14600] gi|229791208|gb|EEP27322.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles DSM 14600] Length = 367 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 5/101 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + I RR ++QE+L + + +T V K+E G + L ++ + Sbjct: 4 IAENIYQRRKEKNITQEELADFMMVTKASVSKWETGQSYPDILLLPKLATFFNVTVDELI 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P + + + T +G+ I D+K+ Sbjct: 64 GYEPQLSLEQIKKIYEDFSKDITKNGIDEV-----IRDIKL 99 >gi|228911728|ref|ZP_04075501.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] gi|228847886|gb|EEM92767.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] Length = 374 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R G++QE+L +GIT V K+E G + + L ++ I +P Sbjct: 10 IADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELISYTP 69 Query: 79 TVCSD 83 + + Sbjct: 70 QMKQE 74 >gi|229083181|ref|ZP_04215564.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] gi|228700099|gb|EEL52702.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] Length = 214 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ M+ E+L E L ++ V ++ G S++ I+++L ++F D Sbjct: 5 GLKLSQLMKKNNMTDEQLAELLSVSRTTVLRWRNGERSPKMSKISQIAKILNVSATYFID 64 Query: 76 VSPTVCSD 83 + + C + Sbjct: 65 ENESYCPE 72 >gi|229162203|ref|ZP_04290172.1| hypothetical protein bcere0009_29800 [Bacillus cereus R309803] gi|228621253|gb|EEK78110.1| hypothetical protein bcere0009_29800 [Bacillus cereus R309803] Length = 374 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R G++QE+LG +GIT V K+E G + + L ++ I +P Sbjct: 10 IADKRKEKGITQEELGAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELISYTP 69 Query: 79 TVCSD 83 + + Sbjct: 70 QMEQE 74 >gi|217966210|ref|YP_002351888.1| gp33 [Listeria monocytogenes HCC23] gi|217335480|gb|ACK41274.1| gp33 [Listeria monocytogenes HCC23] gi|307572181|emb|CAR85360.1| HTH-type transcriptional regulator, putative [Listeria monocytogenes L99] Length = 158 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 7/88 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G R++ R +QE + + LGI+ E G N + ++ + + Sbjct: 3 GNRLKQLRKNNNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFGVSTDYLLG 62 Query: 74 -----FDVSPTVCSDISSEENNVMDFIS 96 F + D ++ E + + ++ Sbjct: 63 RSNNGFIDTIAAHIDSNATEEEMEEILA 90 >gi|213616057|ref|ZP_03371883.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 156 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +RI+ R MS ++L G++ + + E + L I+ + + Sbjct: 18 INEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSV 77 Query: 71 SFFFDVSPT 79 + F +V+ Sbjct: 78 ADFVNVASE 86 >gi|207856821|ref|YP_002243472.1| hypothetical protein SEN1367 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708624|emb|CAR32946.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 200 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +RI+ R MS ++L G++ + + E + L I+ + + Sbjct: 18 INEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSV 77 Query: 71 SFFFDVSPT 79 + F +V+ Sbjct: 78 ADFVNVASE 86 >gi|167549848|ref|ZP_02343606.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168235794|ref|ZP_02660852.1| transcriptional regulator, Cro/CI family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168819468|ref|ZP_02831468.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194734886|ref|YP_002114693.1| transcriptional regulator, Cro/CI family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198246100|ref|YP_002215480.1| Cro/CI family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205352653|ref|YP_002226454.1| hypothetical protein SG1453 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|194710388|gb|ACF89609.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291185|gb|EDY30538.1| transcriptional regulator, Cro/CI family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940616|gb|ACH77949.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205272434|emb|CAR37321.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324984|gb|EDZ12823.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205343756|gb|EDZ30520.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085841|emb|CBY95617.1| Uncharacterized HTH-type transcriptional regulator ydcN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614917|gb|EFY11842.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619357|gb|EFY16237.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623169|gb|EFY20011.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628458|gb|EFY25246.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634866|gb|EFY31597.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638569|gb|EFY35264.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640896|gb|EFY37544.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645375|gb|EFY41903.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651740|gb|EFY48112.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654360|gb|EFY50682.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661201|gb|EFY57427.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662671|gb|EFY58878.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322671870|gb|EFY67991.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677085|gb|EFY73149.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680253|gb|EFY76292.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685318|gb|EFY81314.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194137|gb|EFZ79335.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199377|gb|EFZ84471.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203486|gb|EFZ88510.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205869|gb|EFZ90832.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217196|gb|EGA01917.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219108|gb|EGA03611.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227274|gb|EGA11444.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232058|gb|EGA16165.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234585|gb|EGA18672.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238038|gb|EGA22097.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243361|gb|EGA27380.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246168|gb|EGA30153.1| hypothetical protein SEEM9199_07956 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323259102|gb|EGA42748.1| hypothetical protein SEEM8283_04720 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260430|gb|EGA44043.1| hypothetical protein SEEM8284_18305 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266482|gb|EGA49969.1| hypothetical protein SEEM8285_00870 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271206|gb|EGA54633.1| hypothetical protein SEEM8287_05157 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326627719|gb|EGE34062.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 200 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +RI+ R MS ++L G++ + + E + L I+ + + Sbjct: 18 INEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSV 77 Query: 71 SFFFDVSPT 79 + F +V+ Sbjct: 78 ADFVNVASE 86 >gi|218904463|ref|YP_002452297.1| DNA-binding protein [Bacillus cereus AH820] gi|229122857|ref|ZP_04252066.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201] gi|218535175|gb|ACK87573.1| DNA-binding protein [Bacillus cereus AH820] gi|228660721|gb|EEL16352.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201] Length = 374 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R G++QE+L +GIT V K+E G + + L ++ I P Sbjct: 10 IADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELISYKP 69 Query: 79 TVCSD 83 + + Sbjct: 70 QMEQE 74 >gi|150402446|ref|YP_001329740.1| cupin 2 domain-containing protein [Methanococcus maripaludis C7] gi|150033476|gb|ABR65589.1| Cupin 2 conserved barrel domain protein [Methanococcus maripaludis C7] Length = 184 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S E++ + L ++ + Q YE+G + AS L I+ E + Sbjct: 6 KEIASRVRELRELSEISIEEMADHLNVSPEIYQHYEEGTCDIPASVLYEIAHKFEVDMGL 65 Query: 73 FFDVSPT 79 T Sbjct: 66 LLTGEET 72 >gi|119488949|ref|ZP_01621884.1| hypothetical protein L8106_19346 [Lyngbya sp. PCC 8106] gi|119454905|gb|EAW36048.1| hypothetical protein L8106_19346 [Lyngbya sp. PCC 8106] Length = 79 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +R R LG+SQEKL LG++FQ V ++E+G + L I + L Sbjct: 14 VRTLRERLGLSQEKLAASLGVSFQTVNRWERGRAKPSQLALNAIEQKL 61 >gi|42782397|ref|NP_979644.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42738322|gb|AAS42252.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 374 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISID 62 >gi|16077148|ref|NP_387961.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221307890|ref|ZP_03589737.1| hypothetical protein Bsubs1_00405 [Bacillus subtilis subsp. subtilis str. 168] gi|221312212|ref|ZP_03594017.1| hypothetical protein BsubsN3_00405 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317145|ref|ZP_03598439.1| hypothetical protein BsubsJ_00405 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321408|ref|ZP_03602702.1| hypothetical protein BsubsS_00405 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313750|ref|YP_004206037.1| putative transcriptional regulator [Bacillus subtilis BSn5] gi|90101610|sp|O31417|YAZB_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yazB gi|2632347|emb|CAB11856.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291482452|dbj|BAI83527.1| hypothetical protein BSNT_00137 [Bacillus subtilis subsp. natto BEST195] gi|320020024|gb|ADV95010.1| putative transcriptional regulator [Bacillus subtilis BSn5] Length = 69 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+RIR R + G +QE + LGI+ + + E+G A+ +Q ++VL Sbjct: 7 GRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQDAADVLNISAD 62 >gi|15965148|ref|NP_385501.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309160|ref|ZP_07588831.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307322243|ref|ZP_07601610.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15074328|emb|CAC45974.1| Transcription regulator [Sinorhizobium meliloti 1021] gi|306892094|gb|EFN22913.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306900306|gb|EFN30922.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 132 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R G+S ++L LG+ + +E+ A+RL ++ VL ++ Sbjct: 21 LGGRIWRARDATGLSTKELASKLGVRNDTISSWERDRAEPRANRLFMLAGVLGVTPAWLM 80 Query: 75 DVSPTVCSDISSEEN 89 D + + + Sbjct: 81 AGIGRAPDDSTGDAS 95 >gi|16760223|ref|NP_455840.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142008|ref|NP_805350.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161903|ref|ZP_03347613.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426582|ref|ZP_03359332.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586064|ref|ZP_03367890.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213645936|ref|ZP_03375989.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864716|ref|ZP_03386835.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25513334|pir||AI0661 conserved hypothetical DNA-binding protein STY1400 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502518|emb|CAD01666.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137637|gb|AAO69199.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 200 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +RI+ R MS ++L G++ + + E + L I+ + + Sbjct: 18 INEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSV 77 Query: 71 SFFFDVSPT 79 + F +V+ Sbjct: 78 ADFVNVASE 86 >gi|186685942|ref|YP_001869138.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468394|gb|ACC84195.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 377 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++ ++ R LGMSQ+ L +T Q + E G+ + +++ L + Sbjct: 4 DSDLRNNLKSIRTRLGMSQQDLANIASVTRQTISGVESGLYAPSVAITLRLAKALGCQVE 63 Query: 72 FFF 74 F Sbjct: 64 DLF 66 >gi|30263282|ref|NP_845659.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528657|ref|YP_020006.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186132|ref|YP_029384.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65320613|ref|ZP_00393572.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165869231|ref|ZP_02213891.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631940|ref|ZP_02390267.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637201|ref|ZP_02395481.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685020|ref|ZP_02876245.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170705153|ref|ZP_02895618.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650111|ref|ZP_02933112.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564884|ref|ZP_03017805.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813847|ref|YP_002813856.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602441|ref|YP_002867542.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685897|ref|ZP_05149756.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254738367|ref|ZP_05196070.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742466|ref|ZP_05200151.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752683|ref|ZP_05204719.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761198|ref|ZP_05213222.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257916|gb|AAP27145.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503805|gb|AAT32481.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180059|gb|AAT55435.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164715957|gb|EDR21474.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514708|gb|EDR90074.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532238|gb|EDR94874.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130008|gb|EDS98870.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671280|gb|EDT22018.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084063|gb|EDT69122.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564201|gb|EDV18165.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227004554|gb|ACP14297.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229266849|gb|ACQ48486.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 374 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|328545630|ref|YP_004305739.1| transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326415700|gb|ADZ72763.1| Transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 174 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 17/115 (14%) Query: 17 KRIRLRRMILGMSQE-KLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R+R R G Q +L LGI+ V YE+G AS L ++V +++ Sbjct: 14 QRLRELRRQHGDPQRGELAGKLGISVTAVATYERGEREPAASVLAAYADVFGVNLNWLLT 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + +D + R I D + +++ LV + E Sbjct: 74 GEGEMFADPAKAP---------------ARAMPSI-DPALFRQVGRLVTRVHKEE 112 >gi|304411730|ref|ZP_07393342.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|307306218|ref|ZP_07585963.1| helix-turn-helix domain protein [Shewanella baltica BA175] gi|304349918|gb|EFM14324.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|306911091|gb|EFN41518.1| helix-turn-helix domain protein [Shewanella baltica BA175] Length = 191 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F + +P + + + + +T L Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML 94 >gi|296451497|ref|ZP_06893233.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296880153|ref|ZP_06904120.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259672|gb|EFH06531.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296428878|gb|EFH14758.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 196 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 3 LNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62 Query: 71 SFFF 74 ++FF Sbjct: 63 TYFF 66 >gi|268610925|ref|ZP_06144652.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 68 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R M+Q++L L ++ + +YE G L I++ + I + + Sbjct: 2 RLKELRKKKHMTQQRLAIELNMSQNTISRYETGEREADYKTLILIADYFQVSIDYLLE 59 >gi|326201176|ref|ZP_08191048.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988744|gb|EGD49568.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 183 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ + R ++ +G+ +G++ KYEK + L +E+ + + Sbjct: 2 IGERLAMLRNEKKLTMRAIGKLVGVSDAAWVKYEKNRAEPSIATLCKAAELFNVSLDYLM 61 >gi|229136572|ref|ZP_04265260.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228646884|gb|EEL03031.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] Length = 65 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R+ G++Q++L + + +T Q + E HI++ L+ + F Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDESLDKLF 61 >gi|222152359|ref|YP_002561534.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113170|emb|CAR40616.1| DNA-binding protein [Streptococcus uberis 0140J] Length = 112 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KRIRL R+ G++QE+L E + V K E + + L+ + L+ F Sbjct: 9 YISKRIRLLRLEKGLTQEQLEEKADLGTNYVYKLENQSTNIKVNTLEKVMTALDVDFEEF 68 Query: 74 FDVSPTVCSDISSE 87 FD+S + S+ Sbjct: 69 FDISLVEQNSDLSD 82 >gi|221195127|ref|ZP_03568183.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] gi|221185030|gb|EEE17421.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] Length = 217 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ I+ R ++QE+L E + + V ++E G ++ +Q I+ VL +S Sbjct: 1 MSLASNIKYYRQRENLTQEELAEKVDVARSTVTQWETGWSQPRMGAIQRIASVLNVSVSD 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|206889754|ref|YP_002249639.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741692|gb|ACI20749.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 419 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G ++R R+ +SQ++L E + +T + + E I + L Sbjct: 247 IGNKLREIRISRNISQKELAEKVNLTPGFISQMENNQIAPSIVSFMQICDALGV 300 >gi|168211093|ref|ZP_02636718.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168216129|ref|ZP_02641754.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|170710849|gb|EDT23031.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|182381582|gb|EDT79061.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 65 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R + MSQ +L + +G+ Q + E I++ L + ++ F Sbjct: 2 NKIKEYRSLANMSQLELSKKVGVARQTINLIENQKYNPSLDLCIRIAKALGTDLNTLF 59 >gi|134288575|ref|YP_001110814.1| hypothetical protein SPSV3_gp14 [Salmonella phage SETP3] gi|125631940|gb|ABN47343.1| hypothetical protein [Salmonella phage SETP3] gi|126015308|gb|ABN70685.1| hypothetical protein [Salmonella phage SETP5] gi|126015310|gb|ABN70686.1| hypothetical protein [Salmonella phage SETP12] Length = 72 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI RR +GM Q +L G++ + G V +V ++ HI++ L + Sbjct: 6 LGARIERRRKEIGMGQTELAFKAGVSQSLITHLATGRVCKVDCFKIFHIADALGVDPRWL 65 >gi|126700569|ref|YP_001089466.1| putative phage repressor [Clostridium difficile 630] gi|209901281|ref|YP_002290920.1| putative phage repressor [Clostridium phage phiCD27] gi|115252006|emb|CAJ69842.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|199612162|gb|ACH91335.1| putative phage repressor [Clostridium phage phiCD27] Length = 151 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + + RI+ +R+ L MS + L G++ +Q+YE G + + +L+ ++ L+ + Sbjct: 10 LEITNRIKNKRLELNMSYQDLANKTGLSKSTLQRYETGAIKNIPLDKLEILAHALDESPA 69 Query: 72 F 72 F Sbjct: 70 F 70 >gi|126699098|ref|YP_001087995.1| putative transcriptional regulator [Clostridium difficile 630] Length = 197 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 4 LNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 63 Query: 71 SFFF 74 ++FF Sbjct: 64 TYFF 67 >gi|114765017|ref|ZP_01444164.1| DNA binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114542564|gb|EAU45589.1| DNA binding protein, putative [Roseovarius sp. HTCC2601] Length = 189 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 9 NPVDINVGK---RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + +G+ R++ R G+S + + + G++ V + E+G + + L +++ Sbjct: 4 HDAEAVLGRIPGRLKEARQARGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRA 63 Query: 66 LESPISFFFDVSPTVCS 82 L+ + ++ Sbjct: 64 LQVDFAGLLELGQPERG 80 >gi|260683110|ref|YP_003214395.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686708|ref|YP_003217841.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209273|emb|CBA62609.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212724|emb|CBE03830.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 196 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 3 LNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62 Query: 71 SFFF 74 ++FF Sbjct: 63 TYFF 66 >gi|326405603|gb|ADZ62674.1| transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 185 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R+ ++QE++ + L + Q + ++E L ++E+ ES +S F Sbjct: 2 LGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKAEPNFETLIALAELYESDLSAF 60 >gi|302385264|ref|YP_003821086.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302195892|gb|ADL03463.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 160 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 6/108 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+ I+ RR LG+SQE+L G + + K E + S++ I+ L++ + Sbjct: 1 MEIGQIIKRRREELGISQEELALKAGYKSRSSINKIEVDGRGLPQSKIIAIASALKTTPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + S S ++ ++ F ++++ ++ + Sbjct: 61 YLMGWESDNASAFSYVSGCFGEYAG-----EMLENFQRLNEKGQKEAL 103 >gi|258516790|ref|YP_003193012.1| helix-turn-helix domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780495|gb|ACV64389.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 66 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R M+Q++LG G Q+ K E G V + L + L I+ Sbjct: 2 IGNKIRIIRESKHMTQDELGNLTGYKQSQISKIESGSREVKSRELGKFAAALGVKITELL 61 Query: 75 D 75 + Sbjct: 62 E 62 >gi|228907416|ref|ZP_04071274.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] gi|228852277|gb|EEM97073.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] Length = 404 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L + +T + + E G LQ+I+E L SF Sbjct: 4 LGAKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|195977160|ref|YP_002122404.1| hypothetical protein Sez_0004 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973865|gb|ACG61391.1| hypothetical protein Sez_0004 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 121 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ +SQ+ L E L I+ Q + K+E G + L ++ VLE + Sbjct: 7 EQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATLDLENLVTLAAVLEVTLDELVTG 66 Query: 77 SPTVCSDISSEEN--NVMDFIS 96 + E NV +F++ Sbjct: 67 KESAIKVTKKTEKPMNVWEFLT 88 >gi|160932465|ref|ZP_02079855.1| hypothetical protein CLOLEP_01303 [Clostridium leptum DSM 753] gi|156868424|gb|EDO61796.1| hypothetical protein CLOLEP_01303 [Clostridium leptum DSM 753] Length = 100 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G SQ +L + LGI +YE G L+ +S + F D+ Sbjct: 12 QKLKAFRESRGYSQNQLADYLGIERSSYTRYETGETEPSLFALKKLSILYGVSADFLLDI 71 >gi|94994459|ref|YP_602557.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] gi|94547967|gb|ABF38013.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] Length = 232 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ G++Q +LG L + + +EKG N L + + +F Sbjct: 4 GHQLKTARLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYF 61 >gi|22124180|ref|NP_667603.1| transcriptional repressor [Yersinia pestis KIM 10] gi|45443665|ref|NP_995204.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|21956939|gb|AAM83854.1|AE013626_1 transcriptional repressor [Yersinia pestis KIM 10] gi|45438535|gb|AAS64081.1| putative transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] Length = 162 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +Q+++ +G+ Q KYE G++ A +L ++E+L + I + Sbjct: 46 GLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYLLL 105 Query: 76 VSPTVCSDI 84 S S I Sbjct: 106 GSSNETSSI 114 >gi|15675164|ref|NP_269338.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|21910376|ref|NP_664644.1| putative repressor protein [Streptococcus pyogenes MGAS315] gi|28895952|ref|NP_802302.1| repressor protein [Streptococcus pyogenes SSI-1] gi|71903551|ref|YP_280354.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180] gi|139473727|ref|YP_001128443.1| phage repressor-like protein [Streptococcus pyogenes str. Manfredo] gi|209559469|ref|YP_002285941.1| Putative repressor protein [Streptococcus pyogenes NZ131] gi|13622327|gb|AAK34059.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|21904573|gb|AAM79447.1| putative repressor protein [Streptococcus pyogenes MGAS315] gi|28811202|dbj|BAC64135.1| putative repressor protein [Streptococcus pyogenes SSI-1] gi|71802646|gb|AAX71999.1| phage transcriptional repressor [Streptococcus pyogenes MGAS6180] gi|134271974|emb|CAM30212.1| putative phage repressor-like protein [Streptococcus pyogenes str. Manfredo] gi|209540670|gb|ACI61246.1| Putative repressor protein [Streptococcus pyogenes NZ131] Length = 232 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ G++Q +LG L + + +EKG N L + + +F Sbjct: 4 GHQLKTARLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYF 61 >gi|88855996|ref|ZP_01130658.1| Transcription regulator [marine actinobacterium PHSC20C1] gi|88814863|gb|EAR24723.1| Transcription regulator [marine actinobacterium PHSC20C1] Length = 193 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R G + E++ G+T + + E+ + L + +VL I F Sbjct: 15 IGARIRSARKAQGFTLEQVAVSAGLTKGFLSRLERDETSPSVATLVQLCQVLSLEIGSLF 74 Query: 75 DVSPTVCSDISSEEN 89 V +++ + Sbjct: 75 AEPEAVKISLANAPH 89 >gi|330974504|gb|EGH74570.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 199 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 5 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 64 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 65 VLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 97 >gi|311069952|ref|YP_003974875.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|310870469|gb|ADP33944.1| transcriptional regulator [Bacillus atrophaeus 1942] Length = 151 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+ IRL R G S +L G++ + K E+GV+ L+ +SE LE ++ Sbjct: 2 IGRIIRLYRKRKGYSINQLAVEAGVSKSYLSKIERGVHTNPSIQFLKKVSETLEVELTEL 61 Query: 74 FDVSPTVCSDISSEEN 89 FD + EE Sbjct: 62 FDAETILHQKTGGEEE 77 >gi|307828919|gb|ADN95141.1| Str [Staphylococcus aureus] Length = 67 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R+ GMSQ+K LG+ +Q + +EK + + S++ + ++ P+ + F Sbjct: 9 LRAARINNGMSQKKAASLLGVHYQTLASWEKDSSDLSRSKMLLMEKIYSIPLEYIF 64 >gi|261819794|ref|YP_003257900.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603807|gb|ACX86293.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 78 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+ + I+ R G+SQE L + G+ + E+ + + Sbjct: 1 MERKINPSRARVIFSHNIKKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDR 60 Query: 62 ISEVLESPISFFFDVSP 78 I+ L S+ + Sbjct: 61 IASALCVSPSYLLESDD 77 >gi|260654737|ref|ZP_05860225.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260630452|gb|EEX48646.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 240 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK--GVNRVGASRLQHISEVLESPISFF- 73 KR+R R G++Q+ + E LGI+ + ++E N AS+L ++ + + ++ Sbjct: 8 KRLRAAREAAGVTQKTVSETLGISKMTIVRWESLDAPNEPTASQLVQLASLYGTSVAALT 67 Query: 74 FDVSPTVCSDISSEENNVM 92 + +P + + ++ + Sbjct: 68 AEATPADKKEAAPDDGTAL 86 >gi|260555242|ref|ZP_05827463.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260411784|gb|EEX05081.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 197 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 P++ F S N P+ Sbjct: 62 PLTQIFTNEAGNSSSQPLIRRNEQAEWRDPET 93 >gi|255036105|ref|YP_003086726.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254948861|gb|ACT93561.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 279 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 1/89 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + G IR R ++QE E LG+T ++ E G A L IS+ I Sbjct: 6 LFFGSNIRFLRERRRLTQEDFAEQLGVTRVKLAAIEAGRTENPSAVDLIKISDFFGLSID 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDG 100 F + ++ E + Sbjct: 66 NLFRIDLRGVGELPLRELEAGSPLYMKGT 94 >gi|255655505|ref|ZP_05400914.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] Length = 194 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 1 MNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 60 Query: 71 SFFF 74 ++FF Sbjct: 61 TYFF 64 >gi|254975050|ref|ZP_05271522.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092439|ref|ZP_05321917.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100520|ref|ZP_05329497.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306462|ref|ZP_05350633.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314177|ref|ZP_05355760.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516856|ref|ZP_05384532.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649957|ref|ZP_05396859.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|306520039|ref|ZP_07406386.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|328887610|emb|CAJ68359.2| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 194 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 1 MNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 60 Query: 71 SFFF 74 ++FF Sbjct: 61 TYFF 64 >gi|217971536|ref|YP_002356287.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217496671|gb|ACK44864.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 191 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F + +P + + + + +T L Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML 94 >gi|209885534|ref|YP_002289391.1| helix-turn-helix domain protein [Oligotropha carboxidovorans OM5] gi|209873730|gb|ACI93526.1| helix-turn-helix domain protein [Oligotropha carboxidovorans OM5] Length = 354 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 40/104 (38%), Gaps = 6/104 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G ++++ R G+S L + + ++ Q + KYE+ + + L ++ L + Sbjct: 2 IGHKLKVARSASGLSLRGLADAMDGIVSAQAIGKYERNEDMPSSRVLIALAAALHVTEDY 61 Query: 73 FFDVSPTVCSDIS----SEENNVMDFISTPDGLQLNRYFIQIDD 112 + + ++ + + + ++ I+D Sbjct: 62 LLSEDELALEGVEFRKKAGTSSREEAALEARAIHMLERYLAIED 105 >gi|169796192|ref|YP_001713985.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213157074|ref|YP_002319119.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215483646|ref|YP_002325867.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|301347624|ref|ZP_07228365.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056] gi|301510309|ref|ZP_07235546.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058] gi|301596869|ref|ZP_07241877.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059] gi|332850551|ref|ZP_08432827.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332865761|ref|ZP_08436556.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|169149119|emb|CAM86996.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213056234|gb|ACJ41136.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213985862|gb|ACJ56161.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|332730613|gb|EGJ61927.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332735102|gb|EGJ66186.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 197 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 P++ F S N P+ Sbjct: 62 PLTQIFTNEAGNSSSQPLIRRNEQAEWRDPET 93 >gi|15644083|ref|NP_229132.1| LacI family transcriptional regulator [Thermotoga maritima MSB8] gi|4981889|gb|AAD36402.1|AE001787_7 lacI family transcriptional regulator, putative [Thermotoga maritima MSB8] Length = 111 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G ++ R + ++Q+ L + LG++ V K E G + L I L Sbjct: 18 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 71 >gi|116628702|ref|YP_813874.1| transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300362660|ref|ZP_07058836.1| transcriptional regulator [Lactobacillus gasseri JV-V03] gi|116094284|gb|ABJ59436.1| Predicted transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300353651|gb|EFJ69523.1| transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 70 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ L + + + Q + E ++ L++ ++ F Sbjct: 8 NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLF 65 >gi|331085319|ref|ZP_08334405.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408102|gb|EGG87592.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 150 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 47/111 (42%), Gaps = 20/111 (18%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R ++Q++L + L ++ Q V ++EKG + ++ L+ + Sbjct: 6 NIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVD------ 59 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK----VRQKIIELVR 124 + SD ++ V I + +I D K ++++I++ ++ Sbjct: 60 -ELISDEDVKDLQVNYGIWKSE---------RIKDKKHLQVLQKRILDFIQ 100 >gi|310765756|gb|ADP10706.1| hypothetical protein EJP617_10250 [Erwinia sp. Ejp617] gi|310766559|gb|ADP11509.1| hypothetical protein EJP617_18280 [Erwinia sp. Ejp617] gi|310766566|gb|ADP11516.1| hypothetical protein EJP617_18350 [Erwinia sp. Ejp617] Length = 112 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 1/83 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFDV 76 R+ R +Q+++ + +G+ Q ++YE G ++ + I+ L F+ Sbjct: 6 RLTAFRKEQAFTQQQMADKIGMHVSQYKRYEAGASQPTIDVFRRIALALNVSADMLLFEP 65 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + + + + + Sbjct: 66 DERGPDERLKLQFEAVSNLDEKE 88 >gi|309774543|ref|ZP_07669569.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] gi|308917658|gb|EFP63372.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] Length = 71 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ RM L MSQE+L +G T Q + E G I L + F Sbjct: 5 KIKMARMELDMSQEELANKVGATRQTIGLIEAGRYNPSIKLCIKICIALHKHLDDLF 61 >gi|302184902|ref|ZP_07261575.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 182 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 58 MVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|297580368|ref|ZP_06942295.1| transcriptional regulator [Vibrio cholerae RC385] gi|297536014|gb|EFH74848.1| transcriptional regulator [Vibrio cholerae RC385] Length = 133 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 57/132 (43%), Gaps = 21/132 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R +SQ + + L IT Q K+E G+ AS++ ++++L Sbjct: 2 IGETLKEARAKTKLSQYDMADKLKITKQTYMKWENGITEPKASQISELAKILNI------ 55 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ--KIIELVRSIVSSEKK 132 +C ++ ++ DFI ++ + + ++++L I E+ Sbjct: 56 -TEAEICRGKLNKRYSLEDFI------------YRLSCQRPSREMQVLKLWEMISDHEEF 102 Query: 133 YRTIEEECMVEQ 144 ++++ E + E Sbjct: 103 FKSLSPESIEEH 114 >gi|326317279|ref|YP_004234951.1| XRE family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374115|gb|ADX46384.1| transcriptional regulator, XRE family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 469 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++R R G+SQ L + LG++ + + E+ + S L I VL + F Sbjct: 5 FMGVKLRKLRAERGLSQIALAQALGLSPSYLNQIEQNQRPLTVSVLLKIHRVLGVDVQEF 64 Query: 74 FDVSPT-VCSDISSEENNVMDFISTPD 99 + + + + + ++ P+ Sbjct: 65 SEDEEARLVAGLRQALAGAAEPVALPE 91 >gi|255012031|ref|ZP_05284157.1| DNA-binding protein [Bacteroides fragilis 3_1_12] gi|313149871|ref|ZP_07812064.1| predicted protein [Bacteroides fragilis 3_1_12] gi|313138638|gb|EFR55998.1| predicted protein [Bacteroides fragilis 3_1_12] Length = 72 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+R R G+SQEKL E G+ + E+ + I+ L ++ F Sbjct: 15 QRVRTLREAQGISQEKLAERAGLHRTYIGMVERLERNPSLVCIHKIANGLGVHVTELF 72 >gi|152985210|ref|YP_001351391.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960368|gb|ABR82393.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 182 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLK---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF D+ + + + + ++D S ++L Sbjct: 58 LVEFFSLDLEQDSHTQVVYKADELIDISSGAVSMRLV 94 >gi|152971476|ref|YP_001336585.1| putative transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956325|gb|ABR78355.1| putative transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 99 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 I +GKR+++ R+ ++Q +LG G+ ++ YEK V+ + ++ L+ Sbjct: 3 IVIGKRLKISRVRADLTQAELGVLAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDV 62 Query: 69 PISFFFDVSPTVCS 82 P ++F+ V + Sbjct: 63 PEAYFYAVDDDLAE 76 >gi|149012422|ref|ZP_01833453.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|147763478|gb|EDK70414.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] Length = 299 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|159898574|ref|YP_001544821.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891613|gb|ABX04693.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 84 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR R+ GM+Q+ L + +GIT Q V E+G I+ + +P+ F Sbjct: 8 NRIRHLRVEAHGMTQQALADHVGITRQTVIALEQGRYYPSLELAFRIALLFGTPLEQVFQ 67 Query: 76 VSPTVC 81 V T+ Sbjct: 68 VDRTIE 73 >gi|27376226|ref|NP_767755.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349366|dbj|BAC46380.1| blr1115 [Bradyrhizobium japonicum USDA 110] Length = 196 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G+R++ R GM+ +L G++ + + E+ + A+ L + L+ + Sbjct: 9 LDRAIGRRLKTLRTQAGMTLNELAGRSGVSRAMIGRVERAQSSATAALLNKLCAALDVTL 68 Query: 71 S 71 S Sbjct: 69 S 69 >gi|89069298|ref|ZP_01156661.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89045174|gb|EAR51242.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] Length = 202 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 3/102 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 D +G +R R GM+ + E G++ + + E+ + S L+ I++VL Sbjct: 11 STDSKIGAALRRYRKSQGMTLRDVAEGAGLSTGFISQAERDIAVPSLSSLRKIAQVLGVS 70 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + D+ P + + + S G + +I Sbjct: 71 LQ---DILPETVPAMEASRRSERRVYSAHPGSSAAMAYERIS 109 >gi|315650040|ref|ZP_07903120.1| LexA repressor [Eubacterium saburreum DSM 3986] gi|315487810|gb|EFU78113.1| LexA repressor [Eubacterium saburreum DSM 3986] Length = 213 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPIS 71 + +G+RI+ RR LG+S +++ + LG V +YE + L+ I+++LE+ + Sbjct: 1 MTIGERIKQRRRELGLSVDEVADRLGKNRATVYRYESNDIENFPVGTLEPIAKILETTPA 60 >gi|307137999|ref|ZP_07497355.1| putative regulator [Escherichia coli H736] gi|331641924|ref|ZP_08343059.1| putative regulator [Escherichia coli H736] gi|331038722|gb|EGI10942.1| putative regulator [Escherichia coli H736] Length = 140 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFF 73 + R++ RR LG+SQ KL E G T ++ YE G VG + + L P Sbjct: 17 IAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 F + ++ + +++ Sbjct: 77 FGEKDSSELWLNESQRKLLELF 98 >gi|296158619|ref|ZP_06841449.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295891187|gb|EFG70975.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 212 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 75 DVSPTVCSDISSEENNV 91 T + S + + Sbjct: 95 APQKTPEAIAVSGPHEI 111 >gi|257888763|ref|ZP_05668416.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257824817|gb|EEV51749.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 72 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R ++QE+L + L I+ +YE G + L +++ + I + +++ Sbjct: 4 RIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLDIPTQSLIKLADFYSTSIDYLLNLT 63 Query: 78 P 78 Sbjct: 64 D 64 >gi|228993234|ref|ZP_04153155.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] gi|228766560|gb|EEM15202.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] Length = 190 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|255656204|ref|ZP_05401613.1| putative regulatory protein [Clostridium difficile QCD-23m63] gi|296450362|ref|ZP_06892119.1| probable regulatory protein [Clostridium difficile NAP08] gi|296878774|ref|ZP_06902775.1| probable regulatory protein [Clostridium difficile NAP07] gi|296260772|gb|EFH07610.1| probable regulatory protein [Clostridium difficile NAP08] gi|296430202|gb|EFH16048.1| probable regulatory protein [Clostridium difficile NAP07] Length = 105 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR++ R ++ ++ +G++ + + E G +L Sbjct: 3 YIGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVSILNISADVL 62 Query: 74 F-DVSPTVCSDISSEENNVMDFISTPD 99 D++ T + + ++ N + +++ + Sbjct: 63 IKDITSTGKTYLENDINEELKDLNSRE 89 >gi|196044906|ref|ZP_03112140.1| DNA-binding protein [Bacillus cereus 03BB108] gi|229032148|ref|ZP_04188124.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] gi|229186737|ref|ZP_04313895.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|196024394|gb|EDX63067.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228596750|gb|EEK54412.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|228729154|gb|EEL80154.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] Length = 190 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|91710591|gb|ABE50519.1| N-acetylglutamate synthase / N-acetylglutamate kinase [Methylobacillus flagellatus KT] Length = 521 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR RR L M+ ++L + + + E+G V + L+ + L+ ++ Sbjct: 1 MALGNAIRKRRKALNMTLQELARKVNANSGNLSRIERGAQGVSETMLRKLCTALDCTAAY 60 Query: 73 FFDVSPTVCSDIS 85 + S + Sbjct: 61 LYAQSDAESGHST 73 >gi|330900500|gb|EGH31919.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 201 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 7 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 66 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 67 VLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 99 >gi|329117294|ref|ZP_08246011.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907699|gb|EGE54613.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 112 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KRIRL R+ GM+QE+L E + V K E + L+ + + LE F Sbjct: 9 YISKRIRLLRLERGMTQEQLEEKADLGTNYVYKLENQSTNIKVKTLEKVMKALEVDFEGF 68 Query: 74 FDVSPTVCSDISSE 87 FD+S + S+ Sbjct: 69 FDISLIEENSDLSD 82 >gi|295110625|emb|CBL24578.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 74 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 RIR R SQE + L I + YE+G R+ + ++E +++ Sbjct: 5 NRIRSLREDNDYSQEDIASYLHIGQRTYSDYERGKTRIPLDSMIMLAEFYNVDMNY 60 >gi|255262954|ref|ZP_05342296.1| DNA-binding protein [Thalassiobium sp. R2A62] gi|255105289|gb|EET47963.1| DNA-binding protein [Thalassiobium sp. R2A62] Length = 190 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +R R G++ L E L + + + E+G++ + L+H++ L+ +S Sbjct: 10 RTLGADLRALRKARGLTLVDLAETLDRSVGWLSQVERGMSEPSVTDLRHLAAALDVSVSS 69 Query: 73 FF 74 F Sbjct: 70 LF 71 >gi|254497907|ref|ZP_05110672.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352905|gb|EET11675.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 78 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P + +G +IR R G SQE G+ + E+G + A L I++ L Sbjct: 2 KKDPQLLKLGNKIREMRKAHGFSQEAFASESGVDRSYMGSVERGERNIAALNLIKIAQAL 61 Query: 67 ESPISFFF 74 + F Sbjct: 62 NVEVGELF 69 >gi|225376643|ref|ZP_03753864.1| hypothetical protein ROSEINA2194_02285 [Roseburia inulinivorans DSM 16841] gi|225211526|gb|EEG93880.1| hypothetical protein ROSEINA2194_02285 [Roseburia inulinivorans DSM 16841] Length = 101 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I R S KL GI+ ++ E G L +I E L + Sbjct: 1 MNIGEKITYYRKKKNYSVNKLANLAGISQSYLRDIELGNKNPTIEFLSYICEALNISLKD 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|254490244|ref|ZP_05103434.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490560|ref|ZP_05103746.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490688|ref|ZP_05103873.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490854|ref|ZP_05104037.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490891|ref|ZP_05104074.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490935|ref|ZP_05104117.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254491345|ref|ZP_05104525.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254491994|ref|ZP_05105172.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254492163|ref|ZP_05105338.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254492671|ref|ZP_05105842.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|224462192|gb|EEF78470.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224462715|gb|EEF78989.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224462809|gb|EEF79080.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224463474|gb|EEF79743.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224463844|gb|EEF80111.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464026|gb|EEF80292.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464063|gb|EEF80329.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464144|gb|EEF80408.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464304|gb|EEF80567.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464591|gb|EEF80850.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] Length = 272 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + +G RI R L ++Q+ + + +GIT Q KYEKG A L+ I Sbjct: 5 VYIGGRILEERKRLRLTQQDVADFVGITRQSQAKYEKGERSPDAIYLEKI 54 >gi|212709275|ref|ZP_03317403.1| hypothetical protein PROVALCAL_00310 [Providencia alcalifaciens DSM 30120] gi|212688187|gb|EEB47715.1| hypothetical protein PROVALCAL_00310 [Providencia alcalifaciens DSM 30120] Length = 377 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +RL R+ +S E++ E +G T Q +Q+ E G ++ VL FF++ Sbjct: 4 GSNLRLARLYHELSLEQVAERVGKTRQYIQRLESGYALPTKELTNELACVLFVLPDFFYN 63 Query: 76 VSPTVCSD 83 + ++ Sbjct: 64 NEQSPVNE 71 >gi|187921632|ref|YP_001890664.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187720070|gb|ACD21293.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 212 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 75 DVSPTVCSDISSEENNV 91 T + S + + Sbjct: 95 APQKTPEAIAVSGPHEI 111 >gi|110834231|ref|YP_693090.1| transcriptional regulator [Alcanivorax borkumensis SK2] gi|110647342|emb|CAL16818.1| transcriptional regulator, putative [Alcanivorax borkumensis SK2] Length = 71 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G ++R R G+SQE+L G+ + E+G + ++ IS+ L P + F Sbjct: 10 GAKVRAMRKQKGLSQEELASLAGLDRSYMGHIERGEKNITLLKIYQISDALSLPAAIF 67 >gi|322378078|ref|ZP_08052565.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] gi|321281060|gb|EFX58073.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] Length = 108 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + N+ +IR R ++Q++L E ++ + + E + I + LE Sbjct: 2 DDILENISNQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEV 61 Query: 69 PISFFF 74 +S FF Sbjct: 62 TLSDFF 67 >gi|319945801|ref|ZP_08020052.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|322387055|ref|ZP_08060666.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|319748161|gb|EFW00404.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|321142042|gb|EFX37536.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 148 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 47/121 (38%), Gaps = 13/121 (10%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +R++ R ++Q ++ E +G+ ++E G G + ++ + + Sbjct: 5 DYKFSERLKTLRKSKKLTQVQISELIGVQQGTYSRWENGTLEPGLEFVVKLANIFGTTTD 64 Query: 72 FFFDVSP-----------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + P ++I++ + D + + + R +I +++ ++I Sbjct: 65 YLLGQKPYSIISSLPLEQLDLTNIANFSKDEFDILKHSIAVSVARN--KIKATELKDRVI 122 Query: 121 E 121 E Sbjct: 123 E 123 >gi|300856445|ref|YP_003781429.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436560|gb|ADK16327.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L + L ++ Q + E G IS+ I F Sbjct: 3 NRLEKIRKQHGITQEELAQKLEVSRQTIGSLENGRYNPSILLAFKISKFFNVSIEEIFIY 62 Query: 77 SPTVCSD 83 + ++ Sbjct: 63 EESSENE 69 >gi|256849134|ref|ZP_05554567.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|312977969|ref|ZP_07789715.1| probable transcriptional regulator [Lactobacillus crispatus CTV-05] gi|256713910|gb|EEU28898.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|310895276|gb|EFQ44344.1| probable transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 95 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 37/85 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R ++Q +L E +G+T + + EKG + + + E+ I Sbjct: 1 MIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIET 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 F ++ V ++ + N F + Sbjct: 61 LFCLNEYVKNEQAKGRNAYNSFCDS 85 >gi|255524012|ref|ZP_05390974.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296186870|ref|ZP_06855271.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255512299|gb|EET88577.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296048584|gb|EFG88017.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 222 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 8/87 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 VG++I+ R +GM+Q++LG+ LG+ V + E G + + + IS+VL I+ Sbjct: 4 VGEKIKNIRNSIGMTQKQLGKKLGVNESFVNEVENGRKIINQNLIDRISKVLGKDINDIT 63 Query: 74 -------FDVSPTVCSDISSEENNVMD 93 F+ + ++ V D Sbjct: 64 MSFEEQVFEEEKDKKYSAAPKKEAVKD 90 >gi|228917142|ref|ZP_04080700.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842560|gb|EEM87650.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 190 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|228999282|ref|ZP_04158862.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] gi|229006837|ref|ZP_04164470.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] gi|228754459|gb|EEM03871.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] gi|228760479|gb|EEM09445.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] Length = 190 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|229074639|ref|ZP_04207662.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] gi|228708521|gb|EEL60671.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] Length = 107 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 + + SE Sbjct: 62 LHDETEKEARLDSE 75 >gi|284032140|ref|YP_003382071.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811433|gb|ADB33272.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 73 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V RIR R ++Q +L LG+T Q V E+G I+ V P++ Sbjct: 6 VTNRIRALRTDHAELTQAELARRLGVTRQTVIAIEQGRYSPSLELAFQIAHVFGVPLADV 65 Query: 74 F 74 F Sbjct: 66 F 66 >gi|217958091|ref|YP_002336635.1| hypothetical protein BCAH187_A0631 [Bacillus cereus AH187] gi|217068076|gb|ACJ82326.1| conserved domain protein [Bacillus cereus AH187] Length = 73 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I R ++QE+L +GIT + E G ++ ISEVL S + F Sbjct: 2 NQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFKT 61 Query: 77 SPTVCSDISSE 87 + ++E Sbjct: 62 KVRKTNSDNAE 72 >gi|160934569|ref|ZP_02081955.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753] gi|156866022|gb|EDO59394.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753] Length = 121 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FFF 74 G+ I+ R G+S+ +L + L I + + E L + +L+ + FFF Sbjct: 16 GQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILYELVTLLDVSVDQFFF 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S + + ++D +S D Sbjct: 76 PEREQEKSTRRRQLDTMLDGMSEKD 100 >gi|160899167|ref|YP_001564749.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364751|gb|ABX36364.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 63 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 23/56 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R G SQ L + LG++ Q V E G I+ V E+ I F Sbjct: 5 IRELRAQRGWSQAALADLLGVSRQTVNAIETGRYDPSLPLAFAIARVFETRIEAIF 60 >gi|54027463|ref|YP_121705.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018971|dbj|BAD60341.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 396 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPI 70 D ++G RIR R ++Q +L + G++ V+K E+ G + LQ I+ L+ I Sbjct: 3 DSSIGVRIRRFRGKA-LTQRQLADLAGVSVDLVRKLEQGGRQTASIASLQKIARALDVDI 61 Query: 71 SFF 73 + Sbjct: 62 ADL 64 >gi|89074742|ref|ZP_01161200.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89049506|gb|EAR55067.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 125 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKDAREWKGLTQVHMAQQLKVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 ---DVSPTVCSDISSEENNVMDFIS 96 + + S+ E + ++ F S Sbjct: 68 YGDEGIEILESEYKEEIDRLLQFFS 92 >gi|83749268|ref|ZP_00946267.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551] gi|207725182|ref|YP_002255578.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2] gi|207743555|ref|YP_002259947.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609] gi|83724049|gb|EAP71228.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551] gi|206590416|emb|CAQ37378.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2] gi|206594954|emb|CAQ61881.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609] Length = 113 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ + +GKR++ R SQE L + + E+G+ L +I L Sbjct: 17 PAPISVALGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPSVETLANICHCLG 76 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 +S F +P ++ + S P+ Sbjct: 77 VTLSELF--APLDGVSLAPTGKRRANAASPPE 106 >gi|219668525|ref|YP_002458960.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538785|gb|ACL20524.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 69 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R L MSQE+L +G+T Q + E G I + L ++ F Sbjct: 5 RLKAARAGLDMSQEQLAIAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDLF 61 >gi|302037010|ref|YP_003797332.1| hypothetical protein NIDE1672 [Candidatus Nitrospira defluvii] gi|300605074|emb|CBK41407.1| protein of unknown function, contains DNA binding helix-turn-helix motif [Candidatus Nitrospira defluvii] Length = 156 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN VG IR R+ S++ L E GI ++ E AS L+ ++ L Sbjct: 1 MPN-----VGTFIRAWRISQKCSEQALAERAGIAASALEALESEQADPQASTLEALAGAL 55 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFIST 97 + P+ + F + PT + E++ +ST Sbjct: 56 KIPLPWLF-IHPTDLDLLCKEDDEEPAPLST 85 >gi|291544080|emb|CBL17189.1| hypothetical protein RUM_10270 [Ruminococcus sp. 18P13] Length = 176 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 10/88 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RIR R + GM+Q+ LG +G + ++ +YE G A ++ VL+ Sbjct: 1 MAIGERIRFIRNLKGMTQKWLGIAVGFPEKTADIRMAQYESGSRTPKAVLTGALANVLDV 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIS 96 DI SE + F + Sbjct: 61 SP------LALSVPDIDSELGLMHTFFA 82 >gi|307726765|ref|YP_003909978.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307587290|gb|ADN60687.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 212 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 75 DVSPTVCSDISSEENNV 91 T + + + + Sbjct: 95 AAQKTPEAIAVAGPHEI 111 >gi|257792397|ref|YP_003183003.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317490265|ref|ZP_07948753.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA] gi|325833618|ref|ZP_08166067.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257476294|gb|ACV56614.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316910759|gb|EFV32380.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA] gi|325485542|gb|EGC88011.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 83 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ + R++ R G+SQ +L +G++ Q + E G+ A + L+ Sbjct: 15 NDGELELCNRLKAARAEAGLSQAELAGLVGVSRQTISSIETGLFNPTAKLALVLCIALDK 74 Query: 69 PISFFF 74 F Sbjct: 75 KFEDLF 80 >gi|154498504|ref|ZP_02036882.1| hypothetical protein BACCAP_02493 [Bacteroides capillosus ATCC 29799] gi|150272572|gb|EDM99757.1| hypothetical protein BACCAP_02493 [Bacteroides capillosus ATCC 29799] Length = 76 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNR-VGASRLQHISEVLESPI 70 I +G +I R G++QE L E +G + V + E G R V L I++VL+ P Sbjct: 10 ITLGLKIAYYRKKAGLTQEVLAERIGKSVNFVGQVEGTGTIRGVSLETLFKIAQVLKIPP 69 Query: 71 SFFFDVS 77 S + Sbjct: 70 SKLLEDD 76 >gi|149021940|ref|ZP_01835927.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] gi|147929978|gb|EDK80966.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] Length = 299 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|42526813|ref|NP_971911.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41817128|gb|AAS11822.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 72 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R R + ++Q +L E LG+T Q + E G + +SE+ F Sbjct: 17 LRFYRTLNKLTQVQLAEKLGVTKQFISNMETGQKPISRKTAYLLSEIFGIDAGRF 71 >gi|325262886|ref|ZP_08129622.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324031980|gb|EGB93259.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 81 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +IR R + ++QE++ + L +T Q + YE G L I+++ + + Sbjct: 6 IGCKIRALRKMNYLTQEQMAKKLNMTRQTLSNYELGKRIPDIFELIRIADLFQISLD 62 >gi|323691130|ref|ZP_08105410.1| hypothetical protein HMPREF9475_00271 [Clostridium symbiosum WAL-14673] gi|323504827|gb|EGB20609.1| hypothetical protein HMPREF9475_00271 [Clostridium symbiosum WAL-14673] Length = 130 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+RL R G +QE + + +G T Q +YE + L ++S + Sbjct: 4 LGERLRLLREKNGKTQEDISKVIGTTQQIYSRYETNKTELPVRHLLNLSSYYNVSTDYL 62 >gi|307128188|ref|YP_003880219.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|306485250|gb|ADM92119.1| transcriptional activator [Streptococcus pneumoniae 670-6B] Length = 299 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|307126394|ref|YP_003878425.1| XRE family transcriptional regulator [Streptococcus pneumoniae 670-6B] gi|306483456|gb|ADM90325.1| transcriptional regulator, xre family [Streptococcus pneumoniae 670-6B] Length = 271 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 28 MSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 MSQ +L E GI Q Q+ + E G GA L +++ L+ + +FFD + S Sbjct: 1 MSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSMDYFFDEQVVEKVEELS 58 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVK 114 E + T + +Y ++++VK Sbjct: 59 EFKKLAQTFITNRNYESLKYIYELENVK 86 >gi|295100758|emb|CBK98303.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 208 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G + RR LG++Q+++ E + ++ V ++E G + R+ ++ L++ SF Sbjct: 2 GNYLADRRKALGLTQKEIAELVDVSEATVSRWESGEIANMRRDRIAAYAKALKTTPSFIM 61 Query: 75 DVSPTVCS 82 Sbjct: 62 TGDSADKE 69 >gi|257464929|ref|ZP_05629300.1| transcriptional regulator/helix-turn-helix domain-containing protein [Actinobacillus minor 202] gi|257450589|gb|EEV24632.1| transcriptional regulator/helix-turn-helix domain-containing protein [Actinobacillus minor 202] Length = 129 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 33/58 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +NV ++I+ R SQE++ E + ++ + E+G ++ +L+ I+++L+ I Sbjct: 1 MNVNEKIKKLREAKEWSQEQMAEKMNMSLNGYARIERGETKLHLDKLEQIAQILDVDI 58 >gi|227540362|ref|ZP_03970411.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239686|gb|EEI89701.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 138 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G++I R I G+ Q+ L LG++ Q + K E+ V L+ I+ VL + Sbjct: 10 AHLGRKISRIREIRGIKQDYLAIELGVSQQTISKIEQSE-EVEDLTLEKIAAVLGVTV 66 >gi|191638074|ref|YP_001987240.1| Repressor (Gp132 protein) [Lactobacillus casei BL23] gi|190712376|emb|CAQ66382.1| Repressor (Gp132 protein) [Lactobacillus casei BL23] gi|327385302|gb|AEA56776.1| Transcriptional regulator, XRE family [Lactobacillus casei BD-II] Length = 112 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G+RI L R SQ +L + LGI V +E + + L+ +S + + I + Sbjct: 1 MNTGQRISLLREKKHQSQAELAKTLGIAASTVGMWETNKRKPSSKMLKKLSVLYDVSIDY 60 Query: 73 FF------DVSPTVCSDISSEENNVMDFIST---PDGLQLNR 105 D +P+ + + +M F P+ L++ + Sbjct: 61 LLGNDSTTDKTPSEVDIADPKNDTIMTFEGRPIPPEDLEIIK 102 >gi|319424700|gb|ADV52774.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 188 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F + +P + + + + +T L Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML 94 >gi|189426312|ref|YP_001953489.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189422571|gb|ACD96969.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 188 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G +I+ R+ ++ + + G + + + E + L I+ + I F Sbjct: 6 NIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIARFFDVKIGHF 65 Query: 74 F 74 F Sbjct: 66 F 66 >gi|86136966|ref|ZP_01055544.1| hypothetical protein MED193_14867 [Roseobacter sp. MED193] gi|85826290|gb|EAQ46487.1| hypothetical protein MED193_14867 [Roseobacter sp. MED193] Length = 140 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 4/106 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ + R +G SQ + E +G++ + YEKG + L + E E + + Sbjct: 13 GARLTIARNEIGFSQAAMAEAIGVSPRAYHSYEKGQRGMPVEALVAMGERFEVDVPWLLL 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + ++ + E ++ L I+I K R I+ Sbjct: 73 GTKSIRAGHDFEALKHIESSLDKH---LTDEGIKIKSEK-RGAIVA 114 >gi|291530080|emb|CBK95665.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 134 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFFFD 75 ++++ R G+ Q++ + +G++ + V YE G ++EVL+ +++ Sbjct: 5 EKVKEARTKAGLKQDEFAKAIGVSLRTVSNYEAGTRYPKKRETYYKMAEVLKVDVNYLLT 64 Query: 76 VSPTVCSDISSE 87 + S+ Sbjct: 65 DDEEFLLNAESK 76 >gi|258538334|ref|YP_003172833.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|257150010|emb|CAR88982.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 202 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N K+++ R+ M+Q L + L ++ V +E N + I+ + + Sbjct: 1 MNFSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLD 59 >gi|237797760|ref|ZP_04586221.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020610|gb|EGI00667.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 182 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 58 MVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|149925664|ref|ZP_01913928.1| transcriptional regulator, XRE family protein [Limnobacter sp. MED105] gi|149825781|gb|EDM84989.1| transcriptional regulator, XRE family protein [Limnobacter sp. MED105] Length = 93 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 IR RR LG++Q++LGE LGI + V EK + +RL + + L+ + Sbjct: 15 IRTRRRELGLTQKQLGERLGIDQRTVSSLEKNPGSISVNRLFAVLDALQVSL 66 >gi|148544879|ref|YP_001272249.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|184154216|ref|YP_001842557.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227364019|ref|ZP_03848119.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri MM2-3] gi|325683224|ref|ZP_08162740.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri MM4-1A] gi|148531913|gb|ABQ83912.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|183225560|dbj|BAG26077.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227070941|gb|EEI09264.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri MM2-3] gi|324977574|gb|EGC14525.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri MM4-1A] Length = 293 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R +SQ +L L ++ Q V K+E G +L +++V + Sbjct: 8 QLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLD 61 >gi|138895235|ref|YP_001125688.1| PbsX family transcriptional regulator [Geobacillus thermodenitrificans NG80-2] gi|196248177|ref|ZP_03146878.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134266748|gb|ABO66943.1| Transcriptional regulator PBSX family [Geobacillus thermodenitrificans NG80-2] gi|196211902|gb|EDY06660.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 67 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ ++Q++L E +G+T Q + EKG I L + F Sbjct: 3 NNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIF 60 >gi|126641560|ref|YP_001084544.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC 17978] gi|184157878|ref|YP_001846217.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|239502244|ref|ZP_04661554.1| transcriptional regulator [Acinetobacter baumannii AB900] gi|332872520|ref|ZP_08440490.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|126387444|gb|ABO11942.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC 17978] gi|183209472|gb|ACC56870.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|238685471|gb|ACR54771.1| predicted transcriptional regulator [Acinetobacter genomosp. 13TU] gi|255076973|gb|ACU00285.1| transcriptional regulator [Acinetobacter baumannii] gi|322508196|gb|ADX03650.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323517283|gb|ADX91664.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|323517795|gb|ADX92176.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332739326|gb|EGJ70183.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 197 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 P++ F S N P+ Sbjct: 62 PLTQIFTNEAGNSSSQPLIRRNEQAEWRDPET 93 >gi|159036046|ref|YP_001535299.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914881|gb|ABV96308.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +PN +G IR R +S +L E G++ + + E+G+ + A LQ Sbjct: 1 MATGKDLPN-----IGGFIRDLRRNAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQ 55 Query: 61 HISEVLESP 69 ++ L Sbjct: 56 QLASALRVS 64 >gi|78067667|ref|YP_370436.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968412|gb|ABB09792.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 104 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VGK IR+RR+ L +SQE L I + K E+G V L I+ L S Sbjct: 38 KEVGKAIRVRRLELDISQETLAHLANIDRSHMGKIERGERNVTLLNLLKIARALSCRPS 96 >gi|327402685|ref|YP_004343523.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318193|gb|AEA42685.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 86 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D G+ I+ +R L +Q L E + FQ + + E+G + +++ Sbjct: 4 NEFDSLFGEFIKQKRKSLNWTQNDLAEKINNDFQNISRLERGEVSPSIFWISELAKGFGC 63 Query: 69 PISFFFDVSPTVCSDI 84 + S+I Sbjct: 64 SLGELMTEFDAFVSNI 79 >gi|325527286|gb|EGD04653.1| helix-turn-helix domain-containing protein [Burkholderia sp. TJI49] Length = 84 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ + RIR+ R G+SQE E GI V E+G V S L+ + V+ P Sbjct: 13 PLKAILATRIRVYRQEHGLSQEDFAELCGIHRTYVGSVERGERNVTLSTLEVFASVMGIP 72 Query: 70 I 70 + Sbjct: 73 V 73 >gi|322412543|gb|EFY03451.1| prophage Sa05, DNA-binding protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 109 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+++ L + + Q++E G +++ + Q +++ E +++ Sbjct: 2 NRLKELRQEKKLSQKEIALELQVPPRTYQRWENGESQIKPDKAQDLADYFEVTVAYL 58 >gi|295110793|emb|CBL24746.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 104 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + N+ K + R +SQE+ E +G+T Q V ++E GV+ + L ISE P+ Sbjct: 8 NQNIAKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFAIPVD 67 >gi|262273102|ref|ZP_06050919.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] gi|262222858|gb|EEY74166.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] Length = 123 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 10/109 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 V KRI+ R G++Q K+ + L + Q E G L I+E+ E P+ + Sbjct: 6 AQVAKRIKEAREWKGITQVKMAKLLQVARQTYLDIETGKTEPRVRMLSEIAEITERPLVW 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 F + + D D +L +F ++ + R I+ Sbjct: 66 FV---------YGDADVELHDVQYKQDVNRLLEHFSKLP-HEARTAILN 104 >gi|257486009|ref|ZP_05640050.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625938|ref|ZP_06458892.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646848|ref|ZP_06478191.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|320323588|gb|EFW79672.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328221|gb|EFW84225.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330868810|gb|EGH03519.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986067|gb|EGH84170.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010372|gb|EGH90428.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 201 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 7 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 66 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 67 VLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 99 >gi|213971279|ref|ZP_03399395.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301385049|ref|ZP_07233467.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302059128|ref|ZP_07250669.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302131456|ref|ZP_07257446.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923924|gb|EEB57503.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|330876283|gb|EGH10432.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330958714|gb|EGH58974.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] gi|330966976|gb|EGH67236.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 201 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 11/103 (10%) Query: 6 KIPNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 P+P ++ +G +I+ +R + + GI+ + K E L + Sbjct: 5 NEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRL 64 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +VL P+S F S + +GL++ R Sbjct: 65 CDVLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 99 >gi|54308516|ref|YP_129536.1| hypothetical protein PBPRA1323 [Photobacterium profundum SS9] gi|46912945|emb|CAG19734.1| hypothetical protein PBPRA1323 [Photobacterium profundum SS9] Length = 401 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ R LG+++ L + ++ V +E G +LQ +S L P+ +F Sbjct: 11 NRLTQARESLGLTKVALATLVNVSGATVTNWENGKQNPQGDKLQALSIALGQPVHWF 67 >gi|41057317|ref|NP_958215.1| gene 40 protein [Enterobacteria phage Sf6] gi|191165481|ref|ZP_03027322.1| conserved domain protein [Escherichia coli B7A] gi|194429702|ref|ZP_03062219.1| conserved domain protein [Escherichia coli B171] gi|291281105|ref|YP_003497923.1| gene 40 protein [Escherichia coli O55:H7 str. CB9615] gi|300898213|ref|ZP_07116569.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|331678335|ref|ZP_08379010.1| repressor protein CI [Escherichia coli H591] gi|132193|sp|P03036|RCRO_BP434 RecName: Full=Regulatory protein cro; AltName: Full=Antirepressor gi|230833|pdb|3CRO|L Chain L, The Phage 434 CroOR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION gi|230834|pdb|3CRO|R Chain R, The Phage 434 CroOR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION gi|157834420|pdb|1ZUG|A Chain A, Structure Of Phage 434 Cro Protein, Nmr, 20 Structures gi|157834766|pdb|2CRO|A Chain A, Structure Of Phage 434 Cro Protein At 2.35 Angstroms Resolution gi|14989|emb|CAA23908.1| unnamed protein product [Phage 434] gi|215174|gb|AAA32245.1| cro [Enterobacteria phage lambda] gi|33334196|gb|AAQ12229.1| gene 40 protein [Shigella phage Sf6] gi|190904404|gb|EDV64112.1| conserved domain protein [Escherichia coli B7A] gi|194412261|gb|EDX28566.1| conserved domain protein [Escherichia coli B171] gi|290760978|gb|ADD54939.1| gene 40 protein [Escherichia coli O55:H7 str. CB9615] gi|300358090|gb|EFJ73960.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|324019901|gb|EGB89120.1| helix-turn-helix protein [Escherichia coli MS 117-3] gi|325497800|gb|EGC95659.1| gene 40 protein [Escherichia fergusonii ECD227] gi|331074795|gb|EGI46115.1| repressor protein CI [Escherichia coli H591] Length = 71 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ RR+ L M+Q +L G+ Q +Q E GV + L I+ L + Sbjct: 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTK-RPRFLFEIAMALNCDPVWL 61 >gi|322372760|ref|ZP_08047296.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] gi|321277802|gb|EFX54871.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] Length = 113 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R+ G++Q ++ E LG+ Q ++E G ++ ++E+L + F++ Sbjct: 5 NIKKARLDAGLTQLEVAEKLGVAQAQYARWENGGRNPKDDTVEKLAEILNTS----FEIL 60 Query: 78 PTVCSDISSEENNVMDFISTPD 99 + + + + T + Sbjct: 61 KGRDDGLEEIVSLLREHELTEE 82 >gi|291525427|emb|CBK91014.1| Helix-turn-helix [Eubacterium rectale DSM 17629] Length = 112 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 38/80 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++GK IR R+ ++QE+L E + + + E+G +++ S L I L+ + Sbjct: 8 KHIGKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKIDANE 67 Query: 73 FFDVSPTVCSDISSEENNVM 92 F + T S+ +N + Sbjct: 68 LFWGTDTHTSESQQLDNQIA 87 >gi|302524912|ref|ZP_07277254.1| DNA-binding protein [Streptomyces sp. AA4] gi|302433807|gb|EFL05623.1| DNA-binding protein [Streptomyces sp. AA4] Length = 474 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 15/109 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R MSQ L L I+ + + E + L I++ FF Sbjct: 7 GARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVDTEFF-- 64 Query: 76 VSPTVCSDISSEENNVMDFI---------STPDGLQLNRYFIQIDDVKV 115 +D S +V + + +T + +L I V Sbjct: 65 ----ANNDTSQLVADVKEALLDEAVGVEATTSELNELASNLPSIAQALV 109 >gi|229008865|ref|ZP_04166231.1| Transcriptional regulator, Cro/CI [Bacillus mycoides Rock1-4] gi|228752405|gb|EEM02067.1| Transcriptional regulator, Cro/CI [Bacillus mycoides Rock1-4] Length = 78 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R++ MSQ+ L + +G++ Q + EK I+ E I+ F Sbjct: 11 NKVYEHRVLRRMSQKDLADAVGVSKQTIFVMEKNNYSPSLVLAYRIANYFEVDINEIF 68 >gi|224583902|ref|YP_002637700.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468429|gb|ACN46259.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 185 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 19 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVF--ISP 76 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 77 PQAEFPPTFDPQQQAMVITP 96 >gi|188492926|ref|ZP_03000196.1| conserved hypothetical protein [Escherichia coli 53638] gi|188488125|gb|EDU63228.1| conserved hypothetical protein [Escherichia coli 53638] Length = 110 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 11/96 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R G+SQ LG +G ++ YEKG + L+ ++ L P+++ Sbjct: 9 ERLKEARCRAGLSQRSLGLLVGFDPASASSRMNHYEKGRHVPDIDTLRRMAAELNVPLNY 68 Query: 73 FF-------DVSPTVCSDISSEENNVMDFISTPDGL 101 FF +++ + E +N+++ + T G+ Sbjct: 69 FFCDDQTTAELALLISRMTEEERSNLIEALKTSSGV 104 >gi|168241154|ref|ZP_02666086.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450448|ref|YP_002045645.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408752|gb|ACF68971.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339362|gb|EDZ26126.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 178 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|206974896|ref|ZP_03235811.1| DNA-binding protein [Bacillus cereus H3081.97] gi|206746915|gb|EDZ58307.1| DNA-binding protein [Bacillus cereus H3081.97] Length = 403 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDEGKIVEL 72 >gi|116695851|ref|YP_841427.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha H16] gi|113530350|emb|CAJ96697.1| Transcriptional Regulator [Ralstonia eutropha H16] Length = 320 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N NP + +G+R+R R G++++ + G++ + + E G LQH Sbjct: 25 AANGTDKNPFLVALGERVRELRACRGLTRKAAAQAAGVSERHLANLEYGSGNASILVLQH 84 Query: 62 ISEVLESPIS 71 I++ L+ ++ Sbjct: 85 IADALQCSLA 94 >gi|87199050|ref|YP_496307.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134731|gb|ABD25473.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 464 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R LG++Q+ + E LGI+ + E+ + A L ++ + Sbjct: 6 LYLGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYK----- 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP----------DGLQLNRYFIQIDDVKVR 116 D++ + + D + P + + F + + +R Sbjct: 61 -LDMADLAADERDDYARRLSDALRDPIFSDIDLPALEVADVAASFPGVTEAMLR 113 >gi|62180172|ref|YP_216589.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127805|gb|AAX65508.1| putative oxidoreductase/putative repressor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714645|gb|EFZ06216.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 178 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|16764949|ref|NP_460564.1| repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992775|ref|ZP_02573871.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16420129|gb|AAL20523.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329040|gb|EDZ15804.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246798|emb|CBG24612.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993529|gb|ACY88414.1| putative repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158133|emb|CBW17630.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912593|dbj|BAJ36567.1| putative repressor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224229|gb|EFX49292.1| Transcriptional regulator yidN, Cro/CI family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129874|gb|ADX17304.1| putative repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988492|gb|AEF07475.1| putative repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 178 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PQAEFPPTFDPQQQAMVITP 89 >gi|54024251|ref|YP_118493.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54015759|dbj|BAD57129.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 287 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K P D VG +R R +SQ L + + + E G +R + + Sbjct: 1 MAATSKRP-VTDSRVGALLREWRQRRRLSQLDLALLADTSARHLSYVETGRSRPSRAMVL 59 Query: 61 HISEVLESPI 70 + L+ P+ Sbjct: 60 RLCAALDVPL 69 >gi|300312210|ref|YP_003776302.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074995|gb|ADJ64394.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 96 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS- 71 +N+G I+L R+ G+SQ L E + + E S ++ I+ L PI Sbjct: 1 MNLGSAIQLCRVKQGLSQSALAEKANCSVSYLSMLENSKRDPTLSTIKSIAGALGVPIEI 60 Query: 72 -FFFDVSPTVCSDISSE 87 FF + I+ + Sbjct: 61 LFFLGADEGELAGINKD 77 >gi|299534219|ref|ZP_07047570.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] gi|298717866|gb|EFI58872.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] Length = 490 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 14/123 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L + L ++ + + E+ + + L I VL I F Sbjct: 2 GVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQF-- 59 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ---KIIELVRSIVSSEKK 132 S + + ++ + + + P+G + ++R+ K+ +L + +++ ++ Sbjct: 60 -SEDEEARLLAQLRDAVAAMPQPEG--------SVPLPELREVAAKLPQLAQMLLAMHQR 110 Query: 133 YRT 135 + Sbjct: 111 HLA 113 >gi|295697360|ref|YP_003590598.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412962|gb|ADG07454.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 70 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GM+ +L E G++ + E G +L I+ LE ++ + Sbjct: 8 GERLKELRRERGMTVRELAEKAGVSQSYIYAVEAGTRGSRVGKLIKIARALEVDLAALVE 67 Query: 76 VSP 78 P Sbjct: 68 DEP 70 >gi|300774987|ref|ZP_07084850.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300506802|gb|EFK37937.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 123 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R SQ ++ L I+ K+E + +L I+EV E I Sbjct: 1 MSLGTKLKQLRQRNNWSQAEVAYKLDISQPAYNKWESDQGKPSLDKLGKIAEVFEIEIQD 60 Query: 73 FFDVSPTVCSDISSEENN 90 F+ V ++ EN+ Sbjct: 61 LFESEGNVIISNNTFENS 78 >gi|164686153|ref|ZP_02210183.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM 16795] gi|164601755|gb|EDQ95220.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM 16795] Length = 183 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ +R R LG+S ++ + G++ + + E+G + S L IS L+ + Sbjct: 8 VGQNLRRLRNSLGLSLDEASKLTGVSKAMLGQIERGESSPTISTLWKISSGLKVNFTSLL 67 Query: 75 DVS 77 D Sbjct: 68 DDE 70 >gi|160934666|ref|ZP_02082052.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753] gi|156866119|gb|EDO59491.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753] Length = 124 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G ++ R ++Q+ L + LG+T + + YE G + ++E + + + Sbjct: 6 GAILQELRKDHKITQKDLADILGVTSKTISNYETGSQFPDLLIIIKLAEYFDVNMDYL 63 >gi|323483371|ref|ZP_08088759.1| hypothetical protein HMPREF9474_00508 [Clostridium symbiosum WAL-14163] gi|323403225|gb|EGA95535.1| hypothetical protein HMPREF9474_00508 [Clostridium symbiosum WAL-14163] Length = 130 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+RL R G +QE + + +G T Q +YE + L ++S + Sbjct: 4 LGERLRLLREKNGKTQEDISKVIGTTQQIYSRYETNKTELPVRHLLNLSSYYNVSTDYL 62 >gi|331647421|ref|ZP_08348513.1| putative regulator [Escherichia coli M605] gi|331043145|gb|EGI15283.1| putative regulator [Escherichia coli M605] Length = 139 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 13/106 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFF 73 + R++ RR LG+SQ KL E G T ++ YE G VG + + L P Sbjct: 17 IAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 F E + +L F Q+ + ++ I Sbjct: 77 FG------------EQESSELWLNESQRKLLELFNQLPGSEQQRMI 110 >gi|269976764|ref|ZP_06183739.1| putative transcriptional regulator [Mobiluncus mulieris 28-1] gi|269934961|gb|EEZ91520.1| putative transcriptional regulator [Mobiluncus mulieris 28-1] Length = 69 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R +SQE+LG +G+T Q + E G I+ + I FD + Sbjct: 4 KIPQLRKERKLSQEELGTAVGVTRQTITSIETGKYVASLPLAYKIAHYFDRTIEDVFDFT 63 Query: 78 PTVCS 82 S Sbjct: 64 NLEES 68 >gi|182440037|ref|YP_001827756.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780706|ref|ZP_08239971.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] gi|178468553|dbj|BAG23073.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661039|gb|EGE45885.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] Length = 190 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 2/84 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ +++ L I+ D Sbjct: 13 RNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDH 72 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 + E V + + + Sbjct: 73 EEGAQVRLVPESRAVR--MWSTEA 94 >gi|164688731|ref|ZP_02212759.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM 16795] gi|164602207|gb|EDQ95672.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM 16795] Length = 115 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + ++G+ ++ R+ M+QE + E +G++ Q V K+E G + S L ++++ Sbjct: 48 IRKSLGEVLKENRIRCKMTQEFVSESIGVSRQAVSKWENGASDPSTSNLLALAKLYGIS 106 >gi|306821502|ref|ZP_07455104.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550460|gb|EFM38449.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 73 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ ++ R + G++QE+ + L ++ Q + E G I+ I Sbjct: 1 MHLKNKLDELRKLKGLTQEEFAKKLRVSRQTISAIENGKYNPSLDLAFEIAIYFNKTIEE 60 Query: 73 FF 74 F Sbjct: 61 IF 62 >gi|300690029|ref|YP_003751024.1| transcription regulator protein [Ralstonia solanacearum PSI07] gi|299077089|emb|CBJ49709.1| putative transcription regulator protein [Ralstonia solanacearum PSI07] Length = 113 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P P+ +G+RI+ R SQE L + + E+G+ L +I Sbjct: 13 STSRPAPILTALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANIC 72 Query: 64 EVLESPISFFFDVSPTVC 81 L ++ F V Sbjct: 73 YALNVTLAELFGPMDGVS 90 >gi|300118308|ref|ZP_07056055.1| transcriptional regulator [Bacillus cereus SJ1] gi|298724277|gb|EFI64972.1| transcriptional regulator [Bacillus cereus SJ1] Length = 373 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 10 IADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISID 62 >gi|297198022|ref|ZP_06915419.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|297146969|gb|EFH28433.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 190 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + V VG R+R R ++ L E GI+ + + E G+ + L I++ + Sbjct: 3 TDDVLAEVGPRLRRLRKDREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIAQAHQ 62 Query: 68 SPISFFFDVSPTVCSDISSEE 88 P+ P + S Sbjct: 63 VPLDELVGAPPVGDPRVRSAP 83 >gi|291544231|emb|CBL17340.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 162 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RIR R + GM+Q+ LG +G + + ++ +YE G A ++ +++ L+ Sbjct: 1 MAIGERIRFIRNLRGMTQKFLGLQVGFSERTADIRMAQYESGSRTPKADLVELLADALDV 60 Query: 69 P 69 Sbjct: 61 S 61 >gi|238894650|ref|YP_002919384.1| hypothetical protein KP1_2654 [Klebsiella pneumoniae NTUH-K2044] gi|238546966|dbj|BAH63317.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 190 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 18/100 (18%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ SQE+L E G++ + +Q+ E G R G L ++ V E ++ ++ Sbjct: 35 NQVKQLRLQRAWSQEQLAEMAGLSVRTIQRIENGE-RPGLETLSALAAVFEVTVA---EI 90 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + + +D +I++ K R Sbjct: 91 GGEARREDAPGQEASLDL--------------RIEEAKAR 116 >gi|207743919|ref|YP_002260311.1| helix-turn-helix domain transcription regulator protein [Ralstonia solanacearum IPO1609] gi|206595321|emb|CAQ62248.1| probable helix-turn-helix domain transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 118 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 18/118 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ + RR G++Q+++ E L I + V + E+G+ RL ++EV E I Sbjct: 13 KSIGRTLAQRREAKGLTQDQVAEALHIGTEAVSRMERGITMPTVQRLAELAEVYECGID- 71 Query: 73 FFDVSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 ++ + + + + T P+ R I+E+V+ I + Sbjct: 72 --ELLIASSTRTGDQAELISQILHTLPEA--------------DRAMIVEVVQRIAAR 113 >gi|168204638|ref|ZP_02630643.1| cI2009 [Clostridium perfringens E str. JGS1987] gi|170663751|gb|EDT16434.1| cI2009 [Clostridium perfringens E str. JGS1987] Length = 78 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 NVG I+ RR+ G S ++L + G+ + + E G+N+ + L +S I Sbjct: 15 NVGTNIKRRRLKKGWSLKQLSKKSGVGIKTINDIELGINKPSKNTLYKLSRTFGITID 72 >gi|188991259|ref|YP_001903269.1| putative regulatory protein. [Xanthomonas campestris pv. campestris str. B100] gi|167733019|emb|CAP51217.1| putative regulatory protein [Xanthomonas campestris pv. campestris] Length = 91 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 29/79 (36%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K +P + G R+ R G+SQE+L G+ + E+G + + ++E Sbjct: 11 KAMPTDPRVLFGLRLAEVRKAKGLSQERLALESGLARSYLGGVERGQRNIALLNIYRLAE 70 Query: 65 VLESPISFFFDVSPTVCSD 83 L + + Sbjct: 71 ALGVRPTSLLEPPSASSPG 89 >gi|123442216|ref|YP_001006197.1| putative DNA-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089177|emb|CAL12021.1| putative DNA-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 160 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R SQE+L E + + +Q+ E G L I+ V+E +S + Sbjct: 5 RIRELRQARAWSQEQLAELCSLNVRTIQRIENGEQ-ASLETLSAIAAVMELKVSELYSPD 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + S E + + + ++ F++ ++ + +I Sbjct: 64 TSQPPETSGEAVD-QRVVDAREAVENEMSFLR----QLLRAVI 101 >gi|148270580|ref|YP_001245040.1| helix-turn-helix domain-containing protein [Thermotoga petrophila RKU-1] gi|281412888|ref|YP_003346967.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|147736124|gb|ABQ47464.1| helix-turn-helix domain protein [Thermotoga petrophila RKU-1] gi|281373991|gb|ADA67553.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 127 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G ++ R + ++Q+ L + LG++ V K E G + L I L Sbjct: 34 QIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 87 >gi|42779445|ref|NP_976692.1| phage repressor [Bacillus cereus ATCC 10987] gi|42735361|gb|AAS39300.1| phage repressor [Bacillus cereus ATCC 10987] Length = 117 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPI 70 +G+ I+ RR +G+S +KL G + ++ K E G + + L I+ L Sbjct: 4 IGQMIKSRREAMGLSLKKLAIACGSSDSEIMKIENGTRKNPNWATLCEIARALNFHP 60 >gi|116073|sp|P23939|CEBA_BACAM RecName: Full=BamHI control element gi|1333709|emb|CAA39000.1| BamH I control element [Bacillus amyloliquefaciens] Length = 102 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 7 IPNPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + + G+++R R+ MSQEKL + + E+G V ++ IS+ Sbjct: 22 MTNNIRLLFGQKVRQIRLSKSNMSQEKLAFECDLHRTYISDIERGTRNVSLDNIEKISKA 81 Query: 66 LESPISFFFD 75 L D Sbjct: 82 LGVQPKDLLD 91 >gi|146291531|ref|YP_001181955.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563221|gb|ABP74156.1| transcriptional regulator, XRE family [Shewanella putrefaciens CN-32] Length = 188 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F + +P + + + + +T L Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML 94 >gi|258593067|emb|CBE69378.1| N-6 DNA methylase [NC10 bacterium 'Dutch sediment'] Length = 640 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 DIN+ K I R LG+SQEKL L ++ + ++EKG R A L I + L+ Sbjct: 8 DINISKLISDLRRRLGISQEKLAAQLRVSLPTINRWEKGKTRPDAMALHVIEQYLQ 63 >gi|269217813|ref|ZP_06161667.1| conserved domain protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212748|gb|EEZ79088.1| conserved domain protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 122 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V R+ + R G+++ KL E LGI +Q + E+G I+ P+ Sbjct: 51 DERVHNRLAVLRAARGVTRRKLAEELGIHYQTMGYLERGEYAPSLHLALRIARWFGVPVE 110 Query: 72 FFFDVSP 78 F + Sbjct: 111 SVFSLDE 117 >gi|262066507|ref|ZP_06026119.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] gi|291379782|gb|EFE87300.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] Length = 94 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K IR RR L ++QE+ + G++F ++++E + L I+ Sbjct: 7 NMKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFEN-TGEISLFSLIKIA 65 Query: 64 EVLES 68 VL Sbjct: 66 IVLGC 70 >gi|253577419|ref|ZP_04854735.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843219|gb|EES71251.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 76 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R LG++Q +L G+T Q + E ++++L++ + F Sbjct: 16 NKIKQFRKRLGLTQNELAAECGVTRQTINCVENNRYDPTLELAFKLAKILQTKVDELF 73 >gi|225378006|ref|ZP_03755227.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans DSM 16841] gi|225210159|gb|EEG92513.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans DSM 16841] Length = 120 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-- 72 VG RIR +R+ LG SQ+++ E + + E+G + + ISE L+ + + Sbjct: 13 VGDRIRKKRVQLGFSQDEVAERIDRAPKYCSDIERGTCGMSTETMLAISECLDMSLDYMM 72 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 F + + ++E V+ +S Sbjct: 73 FGEQTDEEARRQENDELAVIHILS 96 >gi|225387793|ref|ZP_03757557.1| hypothetical protein CLOSTASPAR_01563 [Clostridium asparagiforme DSM 15981] gi|225046079|gb|EEG56325.1| hypothetical protein CLOSTASPAR_01563 [Clostridium asparagiforme DSM 15981] Length = 176 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK+I++ R +SQE+LG + T + +YEKG+ + A + + + + Sbjct: 2 IELGKKIKMVREYNDLSQEELGAVVQKTKSTIGRYEKGLMEIPAKVIIDLCNYYQLSLDA 61 Query: 73 FFDVSPTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDD 112 F + + + E+N + ++ D QL YF + D Sbjct: 62 FVESAYYASHQQNLEKNVSLRKGMLAALDPQQLVNYFNLLPD 103 >gi|224825971|ref|ZP_03699074.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224601608|gb|EEG07788.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 188 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P V ++V +R R LG SQ+KL G++ + + E G + V + L ++ L Sbjct: 4 TPPQVLLDVSANLRQARQALGWSQDKLATAAGVSRRMLVNIEAGDSNVSLATLDRLAAAL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNV 91 F ++ ++ V Sbjct: 64 GLS---FAELVRPPAANPRQPAAPV 85 >gi|182684924|ref|YP_001836671.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|303254087|ref|ZP_07340202.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] gi|303260363|ref|ZP_07346333.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|303262511|ref|ZP_07348453.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|303265142|ref|ZP_07351055.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] gi|303265996|ref|ZP_07351891.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|303268072|ref|ZP_07353873.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|182630258|gb|ACB91206.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|301802667|emb|CBW35433.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302598920|gb|EFL65951.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] gi|302636411|gb|EFL66904.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|302638529|gb|EFL68994.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|302642432|gb|EFL72778.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|302644437|gb|EFL74689.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|302645359|gb|EFL75593.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] Length = 299 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|182436872|ref|YP_001824591.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777467|ref|ZP_08236732.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465388|dbj|BAG19908.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657800|gb|EGE42646.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 210 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R GM+ +L E GI+ + + E G + L ++EV P+ Sbjct: 26 VGPRLRELRRRHGMTLAELAERTGISESTLSRLEGGTRKPTLELLLPLAEVHAVPLD 82 >gi|154496666|ref|ZP_02035362.1| hypothetical protein BACCAP_00958 [Bacteroides capillosus ATCC 29799] gi|150273918|gb|EDN01018.1| hypothetical protein BACCAP_00958 [Bacteroides capillosus ATCC 29799] Length = 162 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + VG+RI R++ GM+Q+ LG LG + ++ +YE G A +++VL+ Sbjct: 1 MAVGERIHFFRLLRGMTQKYLGMALGFPEKSADVRLAQYETGSRTPKADLTAALAQVLDV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|119026373|ref|YP_910218.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765957|dbj|BAF40136.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 105 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 26/62 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ +RM G+ Q L + + + + + + E+G +++ L++ + F Sbjct: 44 LKFKRMERGLKQSDLADLVNVRRETIGRLEQGQYCPSLRLAMDLAKALDTTVEDLFSFDD 103 Query: 79 TV 80 Sbjct: 104 EE 105 >gi|91224300|ref|ZP_01259562.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein [Vibrio alginolyticus 12G01] gi|91190642|gb|EAS76909.1| prophage LambdaSo, transcriptional regulator, Cro/CI family protein [Vibrio alginolyticus 12G01] Length = 88 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF--FF 74 ++ R LG++Q+ L + +G++ V YE G V I L S + F Sbjct: 2 SNLKAIRGELGVTQQALAKKVGVSQSAVNHYENGNRTVDTVLGWRIVNALNSLGADCKFE 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 DV P D +E V I +G Sbjct: 62 DVFPDPQEDCGTEGQEVKPPIRGANG 87 >gi|264677406|ref|YP_003277312.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262207918|gb|ACY32016.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 490 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 14/123 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L + L ++ + + E+ + + L I VL I F Sbjct: 2 GVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQF-- 59 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ---KIIELVRSIVSSEKK 132 S + + ++ + + + P+G + ++R+ K+ +L + +++ ++ Sbjct: 60 -SEDEEARLLAQLRDAVAAMPQPEG--------SVPLPELREVAAKLPQLAQMLLAMHQR 110 Query: 133 YRT 135 + Sbjct: 111 HLA 113 >gi|228969508|ref|ZP_04130319.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228790210|gb|EEM37981.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 112 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 K ++ R G++QE+L L ++ Q++ YE G L I+ P+ Sbjct: 6 KMLKKLRNSYGLTQEELASKLNLSRGQIKNYENGF-EPDLETLDRIASYFNVPVD 59 >gi|255654357|ref|ZP_05399766.1| DNA-binding protein [Clostridium difficile QCD-23m63] Length = 364 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 25/134 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K + L+R G++Q++L +G++ V K+E G + + L ++ + Sbjct: 4 LNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYPDITFLPQLATYFNITVDE 63 Query: 73 FFDVSPTVCSDISSEENNVM--DFISTP------DGLQLNRYFIQ--------------- 109 P + + ++ N + DF + P + ++ + + Sbjct: 64 LICYEPQMMKEDINKLYNKLCKDFTAKPFDEVMIEIREIIKRYYSCFPLIFRMGLLIVNH 123 Query: 110 --IDDVKVRQKIIE 121 I D K R+ +I+ Sbjct: 124 YDIVDEKKRELLID 137 >gi|225571094|ref|ZP_03780111.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] gi|225160175|gb|EEG72794.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] Length = 158 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++I R ++QE+L E L ++ Q V K+E G ++ +S V + Sbjct: 10 EKILTLRKSNDLTQEELAEKLNVSRQSVSKWESGQAVPELEKIVALSSVFNVTTDYL 66 >gi|223983971|ref|ZP_03634129.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM 12042] gi|223964047|gb|EEF68401.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM 12042] Length = 179 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R ++ E+L +T + + E+ + + LQ I E L + ++ Sbjct: 1 MDIGYRIKQLRTKNNLTLEELASRCELTKGFLSQLERNLTSPSIATLQDIVEALGTTLAK 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + ++ V + Sbjct: 61 FFQEETEEKLVFTDDDYFVDE 81 >gi|170016442|ref|YP_001727361.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803299|gb|ACA81917.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 122 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 46/115 (40%), Gaps = 15/115 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--- 74 RI+ R ++Q+ L + + + + KYE G + + I++VL++ + + Sbjct: 7 RIKELRKQKQLTQQGLADKIEASRDTITKYENGRRIPKLAMISLIADVLDTTVDYLQGKT 66 Query: 75 ------------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + +D + +D +T + ++ + ++I + R+ Sbjct: 67 DNALKTSHNGSNNGDEQPLTDAQKQVAYFIDPSATQEDIEQIKKLVEIAKLSKRR 121 >gi|169350310|ref|ZP_02867248.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] gi|169293093|gb|EDS75226.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] Length = 185 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I++ R G++ E+L +T + + E+ + + L+ I E L + + Sbjct: 9 MDIGGKIKMLRQANGLTLEELANRSELTKGFLSQLERDLTSPSITTLEDILEALGTNLQE 68 Query: 73 FFDVSPTV 80 FF P Sbjct: 69 FFSEKPAE 76 >gi|121730295|ref|ZP_01682667.1| fumarate reductase flavoprotein subunit [Vibrio cholerae V52] gi|121627957|gb|EAX60522.1| fumarate reductase flavoprotein subunit [Vibrio cholerae V52] Length = 176 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +R R LG+ Q ++ + +G+T Q K+E G + S+ ++++L+ Sbjct: 10 LREARTKLGLKQNEVAKLVGVTAQTYLKWENGKSEPKISQAGKLAKILKIS 60 >gi|1174332|emb|CAA64677.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens] Length = 182 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L G+T + E + L+ I + PI Sbjct: 1 MSVDIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P + +++ Sbjct: 59 GLAEFFAFEPETSRKAFYRADELVEI 84 >gi|91780190|ref|YP_555397.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692850|gb|ABE36047.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 91 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N G +R R + G SQE+L E G+ V + E+G + ++ I Sbjct: 6 RNFGAAVRRLRELQGWSQEQLAEYAGLNRSYVGEIERGSAIASIVTVDKLARAFGVSIEC 65 Query: 73 FFDVSPTVCSDISSEENNVMD 93 S I E + ++ Sbjct: 66 LLRSSSDQAGVILPEASAPIN 86 >gi|295704614|ref|YP_003597689.1| helix-turn-helix DNA-binding protein [Bacillus megaterium DSM 319] gi|294802273|gb|ADF39339.1| Helix-turn-helix DNA-binding protein [Bacillus megaterium DSM 319] Length = 185 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 11/106 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R + ++L + G++ + K E+G + I+ L P++ Sbjct: 10 VGNELRKIRTQREFTLDELADRTGVSKLTLGKIERGETNPTLGVMWKITTGLNIPLTKLV 69 Query: 75 DVSPTVC--------SDISSEENNVMDFISTPD---GLQLNRYFIQ 109 V P+V S +E ++FI +++ R F+ Sbjct: 70 SVEPSVAVSKCGEGFSLKGPDEAWKVEFIFQNQIDSTIEMYRAFLS 115 >gi|218507568|ref|ZP_03505446.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 167 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 1 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 59 GLAEFFAFEPERPKKAFYAAEELVEI 84 >gi|217959269|ref|YP_002337817.1| DNA-binding protein [Bacillus cereus AH187] gi|217068137|gb|ACJ82387.1| DNA-binding protein [Bacillus cereus AH187] Length = 403 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDEGKIVEL 72 >gi|21909567|ref|NP_663835.1| hypothetical protein SpyM3_0031 [Streptococcus pyogenes MGAS315] gi|28894944|ref|NP_801294.1| hypothetical protein SPs0032 [Streptococcus pyogenes SSI-1] gi|21903748|gb|AAM78638.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28810189|dbj|BAC63127.1| hypothetical protein [Streptococcus pyogenes SSI-1] Length = 303 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++++ R+ +S+E L G+ ++ +Q+ + E G + S++ I++ L + + Sbjct: 4 HFGGKVKVLRLEKRISREDLCGDESELSVRQLARIELGQSIPSLSKVIFIAKALNVSVGY 63 Query: 73 FFDVSP 78 D + Sbjct: 64 LTDGAD 69 >gi|297162496|gb|ADI12208.1| hypothetical protein SBI_09090 [Streptomyces bingchenggensis BCW-1] Length = 199 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R G + +L E GI+ + + E G + L +++ + P+ Sbjct: 13 VGPRLRSLRQARGATLSQLSETTGISVSTLSRLESGQRKPTLELLLPLAKAYQVPLD 69 >gi|296118143|ref|ZP_06836724.1| putative Helix-turn-helix domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295968701|gb|EFG81945.1| putative Helix-turn-helix domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 192 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R+ S + L I+ + + E G R+ L I++ L + + + Sbjct: 12 QRIRGLRLARNWSLDTLARRCEISTSTLSRIETGRQRISLDLLVTIAQALGTSLDQLVEP 71 Query: 77 SPTVCSDISSEENNV 91 I E ++ Sbjct: 72 EGNDDVVIRPEPESL 86 >gi|293608302|ref|ZP_06690605.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828875|gb|EFF87237.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 197 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I + +++R R+ G + + L ++ + E+G A L+ ++ L P Sbjct: 3 DINIRIAQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVP 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 ++ FD P S P+ Sbjct: 63 LTQLFDSPPNTQSPQPMVRRTQQAEWKDPET 93 >gi|269964620|ref|ZP_06178858.1| hypothetical protein VMC_02880 [Vibrio alginolyticus 40B] gi|269830519|gb|EEZ84740.1| hypothetical protein VMC_02880 [Vibrio alginolyticus 40B] Length = 374 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQ-HISEVLESPISFFFD 75 R+++ R G +++ L E GIT + + YE KG+ S L I+++L P+ FF+ Sbjct: 6 RLKIARERRGYTKKALAELTGITTRTLSTYENKGLLDTTDSTLVSRIADILNYPVEFFYA 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 +P + ++ L Sbjct: 66 DNPEQIVKEGVSFRAMTKLSASKRDAAL 93 >gi|261251082|ref|ZP_05943656.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis CIP 102891] gi|260937955|gb|EEX93943.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis CIP 102891] Length = 188 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG ++ R G S +K + G++ + + E+G + ++L I+ E S Sbjct: 5 IKVGDNLKRLRSDKGWSLDKAAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVSFSS 64 Query: 73 F 73 F Sbjct: 65 F 65 >gi|255973945|ref|ZP_05424531.1| predicted protein [Enterococcus faecalis T2] gi|255966817|gb|EET97439.1| predicted protein [Enterococcus faecalis T2] Length = 250 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FF 73 + Sbjct: 84 WL 85 >gi|288947745|ref|YP_003445128.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898261|gb|ADC64096.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 143 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ +SQ ++ L ++ V K E G LQ ++++ E S Sbjct: 4 ARLKSARIARDLSQAQVATALDLSQGFVSKLESGDKTPSVELLQKLAKLYEVTESHLLGS 63 Query: 77 SPTVCSDISSEENNVMDFIS 96 + D SS + I+ Sbjct: 64 TIEGSGDESSGSKTPAEIIA 83 >gi|229818666|ref|YP_002880192.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564579|gb|ACQ78430.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 201 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 11/131 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++ + G++ + + E G + L+ ++ ++ ++ F Sbjct: 25 LGDRLRDLRRQHGLTLRDVAGQTGLSVALLSQIENGRTDPSITSLRKLARAFDAEVATLF 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID----DVKVRQKIIELVRSIVSSE 130 IS +S P GL + ++ D++V + + L VS+E Sbjct: 85 HEPDAPSVHISRPGERF--LLSAPAGLI---AYERVTPGRGDLEVLRSV--LAPGDVSAE 137 Query: 131 KKYRTIEEECM 141 EC+ Sbjct: 138 GPRGHASTECV 148 >gi|228942395|ref|ZP_04104933.1| Transcription regulator, probable-related protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981964|ref|ZP_04142258.1| Transcription regulator, probable-related protein [Bacillus thuringiensis Bt407] gi|228777725|gb|EEM25998.1| Transcription regulator, probable-related protein [Bacillus thuringiensis Bt407] gi|228817236|gb|EEM63323.1| Transcription regulator, probable-related protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 68 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 7 NNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 64 >gi|225859745|ref|YP_002741255.1| transcriptional activator [Streptococcus pneumoniae 70585] gi|225721901|gb|ACO17755.1| transcriptional activator [Streptococcus pneumoniae 70585] Length = 299 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPT 79 Sbjct: 61 SLMPDFSA 68 >gi|169627539|ref|YP_001701188.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239506|emb|CAM60534.1| Putative transcriptional regulator [Mycobacterium abscessus] Length = 85 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + VG RIR R M+QE+L G+T + E G + RL I+ LE Sbjct: 17 NRIRQTVGARIRQIRTSQDMTQEQLALRSGVTRNVLIDVEHGRRGLLYERLFDIAAALEV 76 Query: 69 PIS 71 + Sbjct: 77 TVG 79 >gi|152998873|ref|YP_001364554.1| XRE family transcriptional regulator [Shewanella baltica OS185] gi|151363491|gb|ABS06491.1| transcriptional regulator, XRE family [Shewanella baltica OS185] Length = 191 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F + +P + + + + +T L Sbjct: 64 STFLEPTPQSQGTVFRKPDELRQQPATDGML 94 >gi|126700770|ref|YP_001089667.1| putative phage transcriptional regulator [Clostridium difficile 630] gi|115252207|emb|CAJ70046.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 66 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 G +++ R+ G+ Q++L + +GI+ + E G N + +S L++ + F Sbjct: 2 GINLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61 >gi|160873452|ref|YP_001552768.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160858974|gb|ABX47508.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|315265681|gb|ADT92534.1| helix-turn-helix domain protein [Shewanella baltica OS678] Length = 191 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F + +P + + + + +T L Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML 94 >gi|328954674|ref|YP_004372007.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328454998|gb|AEB06192.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 204 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG IR R L +SQ+ L + ++ Q + +E L +S V ++ + Sbjct: 1 MQVGAHIREHRARLALSQDDLAARIYVSRQTISNWENDKTYPDVQSLLLLSAVFDATVDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 +E+ Sbjct: 61 LIKGDVDAMDKTVNEDA 77 >gi|300704586|ref|YP_003746189.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299072250|emb|CBJ43582.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 113 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P P+ + +GKR++ R SQE L + + E+G+ L +I Sbjct: 13 SPSRPAPISVALGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPSVETLANIC 72 Query: 64 EVLESPISFFF 74 L +S F Sbjct: 73 HCLGVTLSELF 83 >gi|298487379|ref|ZP_07005426.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158064|gb|EFH99137.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 201 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 7 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 66 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 67 VLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 99 >gi|296330586|ref|ZP_06873064.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674634|ref|YP_003866306.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152268|gb|EFG93139.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412878|gb|ADM37997.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 132 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+ IR R + +++ E +GIT + + E+ + + ++ I++ L S Sbjct: 3 NMKMGEAIRRIRKEKKKTLDEVAEAVGITHSYLSRIERNLQQPSIQVIEKIADYLGVHKS 62 Query: 72 F-FFDVSP 78 + FFD Sbjct: 63 YLFFDEES 70 >gi|295105756|emb|CBL03299.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 154 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R G++Q ++ E L +T Q V ++E G + G L+ I+ PI D+ Sbjct: 9 EIRERNGLTQAEMAERLFVTRQAVSRWECGDTQPGIDALKLIAAEFHVPIEKLLDMP 65 >gi|295094924|emb|CBK84015.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 133 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 8/121 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-------SPIS 71 +R R G++Q+ + L I+ YE+G N + +SE+L + S Sbjct: 13 LRYFRQKAGLTQQDVAAALSISRSGYANYEEGRNIPNIEQAIKLSELLNHDFLYAYTLSS 72 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + P + + + + S + + + D RQ I V ++ S Sbjct: 73 RYMQGHPKPLQIVMEDNSYMTAIESNQSTADMLGNYRSLSDSD-RQLIDTFVANLASKNS 131 Query: 132 K 132 + Sbjct: 132 R 132 >gi|293365795|ref|ZP_06612501.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|306824899|ref|ZP_07458243.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306829820|ref|ZP_07463007.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|307703337|ref|ZP_07640281.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315613479|ref|ZP_07888387.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|291315728|gb|EFE56175.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|304427831|gb|EFM30924.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304433110|gb|EFM36082.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307623113|gb|EFO02106.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315314475|gb|EFU62519.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 69 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ ++Q L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|284048461|ref|YP_003398800.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] gi|283952682|gb|ADB47485.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] Length = 80 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR R I M Q L + + + + + E G I+ V P+ F+ Sbjct: 7 KIRDLRRIHKMQQSDLAKLVHVRRETISNIENGKYNPSLKLALDIAHVFGKPVEDIFEYI 66 Query: 78 PTVCSDISSEEN 89 + E Sbjct: 67 EEDDLHLPDSEK 78 >gi|237746706|ref|ZP_04577186.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229378057|gb|EEO28148.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 99 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 6/94 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS- 71 +++G I+ R+ G+SQ KL E + + E + S LQ I L P+ Sbjct: 1 MDIGNAIKTCRIRRGLSQTKLAELSECSVSYLSLIEHNQRDITVSTLQRICHALHVPMGI 60 Query: 72 -FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F S +IS E ++ + L L Sbjct: 61 LLFLGSSQDEFGNISKE----LEAELAKNTLVLL 90 >gi|254512810|ref|ZP_05124876.1| regulator of the anaerobic catobolism of benzoate BzdR [Rhodobacteraceae bacterium KLH11] gi|221532809|gb|EEE35804.1| regulator of the anaerobic catobolism of benzoate BzdR [Rhodobacteraceae bacterium KLH11] Length = 306 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG R+R R G+S+ L E G++ + + + E G + L+ ++ L+ I + Sbjct: 29 IQVGTRVRNARERKGISRRILSESSGVSQRYLAQLEAGTGNISIGLLKRVAHSLDHKIEW 88 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + S + ++ + ++ Sbjct: 89 FV-GEEDPWNSTSLRVAELFS-MADSETREVV 118 >gi|205375367|ref|ZP_03228157.1| XRE family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 111 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 VG RIR+ R ++ ++L ++ + E+G+ + L I++ L + Sbjct: 2 VGNRIRMLREERKLTMQELAVRSKVSKSYISSIERGLQKNPSIRILLRIADTLHVELEDL 61 Query: 74 FDVSPTVCSDISSEENNV 91 FD + + D ++ V Sbjct: 62 FDSTASRFEDTILDQEWV 79 >gi|297203581|ref|ZP_06920978.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|197716044|gb|EDY60078.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 274 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P D VG +R R +SQ +L + + + E G +R + ++E L Sbjct: 8 AASPADQGVGPLLRAWREQRRLSQLELALRADSSARHISFVETGRSRPSEEMVLRLAEHL 67 Query: 67 ESPI 70 + P+ Sbjct: 68 DVPV 71 >gi|148358351|ref|YP_001249558.1| hypothetical protein LPC_0214 [Legionella pneumophila str. Corby] gi|148280124|gb|ABQ54212.1| hypothetical protein LPC_0214 [Legionella pneumophila str. Corby] Length = 86 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +P I +GK IR R G SQE + + + E+G + L I+ + Sbjct: 7 KEKHPNLIKIGKLIRDTRKEKGYSQEDFASQAQLGRTYMGRIERGEQNMTIQTLIQIALI 66 Query: 66 LESPIS 71 L ++ Sbjct: 67 LGVEVA 72 >gi|91209339|ref|YP_539325.1| putative transcription regulator [Escherichia coli UTI89] gi|91070913|gb|ABE05794.1| putative transcription regulator [Escherichia coli UTI89] Length = 154 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASAL 60 Query: 67 ES 68 Sbjct: 61 SV 62 >gi|40063589|gb|AAR38378.1| helix-turn-helix domain protein [uncultured marine bacterium 582] Length = 121 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R MSQ + + LG+ ++K+E+ ++ A+RL ++ +L I + + Sbjct: 5 GDRLAAAREHAAMSQSDMAKRLGVKVSTLRKWEQDLSEPRANRLSMMAGLLNVSIMWLLN 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 S D + L R Sbjct: 65 AEGEGISGPDDGSYIAPDI---QETLNEIR 91 >gi|52079718|ref|YP_078509.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52785086|ref|YP_090915.1| Xre [Bacillus licheniformis ATCC 14580] gi|52002929|gb|AAU22871.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52347588|gb|AAU40222.1| Xre [Bacillus licheniformis ATCC 14580] Length = 117 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 54/120 (45%), Gaps = 15/120 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +QE++ + +G++ + YE G + L+ +++ + I + Sbjct: 2 LGGRLKSLRGKR--TQEEVAKQIGVSRARYSHYENGRSEPDYETLKKLADYYKVTIDYLL 59 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEKK 132 + ++ N+ D I+ P L + + + + RQ+ IE ++ + EKK Sbjct: 60 TG--------TEKKKNIEDEIADP---DLQIAYRDMQEFSPESRQQAIEFIQYLKEKEKK 108 >gi|27375181|ref|NP_766710.1| hypothetical protein bll0070 [Bradyrhizobium japonicum USDA 110] gi|27348317|dbj|BAC45335.1| bll0070 [Bradyrhizobium japonicum USDA 110] Length = 131 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 NPV I G + RR L ++Q +L + ++ + E G + + ++ L+ Sbjct: 13 NPVYIAFGNAVSTRRKALSLTQAQLASKVKMSRASIANIESGRQNILLHHVYALATALD 71 >gi|330881957|gb|EGH16106.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 187 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 7 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 66 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 67 VLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 99 >gi|329768028|ref|ZP_08259539.1| hypothetical protein HMPREF0428_01236 [Gemella haemolysans M341] gi|328838513|gb|EGF88121.1| hypothetical protein HMPREF0428_01236 [Gemella haemolysans M341] Length = 361 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I VG+RIR R+ G + EK G+ G + +Q +E G RL +IS++ ++ Sbjct: 8 IAVGQRIRQIRINGGYTYEKFGDFFGASRGNIQAWEYGKALPNKERLVNISKIAGITVN 66 >gi|326564808|gb|EGE15019.1| putative phage represso [Moraxella catarrhalis 103P14B1] Length = 109 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R G++Q+++ E + G++ + E G ++ +R ++ + + + Sbjct: 5 NRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSK-STTRAVELAHLFGVDVHWLIS 63 Query: 76 VSPT 79 Sbjct: 64 GEGE 67 >gi|325564166|gb|ADZ31423.1| C.PsuNIP [Pseudomonas stutzeri] Length = 78 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G+ +R R +L +SQE+L + GI + E+GV +Q I+ L S + Sbjct: 5 AYFGQAVRRHRELLRLSQEELADRAGIDRTYISGVERGVRNPSLLVMQRIATALGSDLDV 64 Query: 73 FFDVSPTVCS 82 F + + S Sbjct: 65 LFATARELAS 74 >gi|322383792|ref|ZP_08057543.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152004|gb|EFX44947.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 137 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R+ G SQE+ + +G+ + YE G N + L I+E + + + Sbjct: 26 RLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFNTSTDYLLGKT 85 Query: 78 PTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + +++ +F G++L +D K +++I+L+RS++ +K+ Sbjct: 86 DNPESLKVRDLDAISIDDLQNFKIEYRGVELT------EDEK--RQVIKLLRSVLELKKE 137 >gi|296139160|ref|YP_003646403.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027294|gb|ADG78064.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 83 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R RR LG+SQE +G+ + + + E+G + ++ L + D Sbjct: 17 GRRVRARREELGLSQEAAAIQIGVHWTYLGQVERGQRSARVENILKLAHGLNTTPGALLD 76 Query: 76 VSP 78 P Sbjct: 77 GVP 79 >gi|229175212|ref|ZP_04302728.1| Transcriptional regulator, Xre [Bacillus cereus MM3] gi|228608348|gb|EEK65654.1| Transcriptional regulator, Xre [Bacillus cereus MM3] Length = 190 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ +R R +S E+L + G++ + K E+G + + I++ L P+S Sbjct: 15 QVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLS 72 >gi|225575217|ref|ZP_03783827.1| hypothetical protein RUMHYD_03306 [Blautia hydrogenotrophica DSM 10507] gi|225037510|gb|EEG47756.1| hypothetical protein RUMHYD_03306 [Blautia hydrogenotrophica DSM 10507] Length = 71 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I R+ G+SQ + E +G++ + +E G S L+ IS + P+ F F Sbjct: 11 IAACRVNAGLSQREFAEKIGVSLATITNWESGKTEPDLSELRAISNLSGIPMDFIF 66 >gi|209694526|ref|YP_002262454.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208008477|emb|CAQ78645.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 70 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N GK++R R + G+SQ+KL I V + E+G + ++ +++ LE ++ Sbjct: 6 ANFGKKLREIRKVKGVSQDKLALIADIDRSYVGRIERGEVNITLEKVYKLADALECDVT 64 >gi|309776164|ref|ZP_07671155.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308916115|gb|EFP61864.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 90 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 1 MVGNKKI---PNPVDIN-------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 M NK P P D +GK+I R+ ++Q +L G+ + E G Sbjct: 1 MESNKSTRIRPIPYDKEDKELLKEMGKKINRLRVEKNLTQNELANMAGVHKNFICIIENG 60 Query: 51 VNRVGASRLQHISEVLESPISFFFDV 76 V L HI VL++ + FF Sbjct: 61 VQNPSLLSLYHIIRVLDTSLYEFFGG 86 >gi|300710183|ref|YP_003735997.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] gi|299123866|gb|ADJ14205.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] Length = 71 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +++RR ++Q L E + ++ Q + E G H++E + I F+ Sbjct: 5 LKVRRARHELTQSDLAEAVDVSRQTISAIEAGRYNPSLELAFHLAEYFDCSIEDIFE 61 >gi|298492312|ref|YP_003722489.1| XRE family molybdate metabolism transcriptional regulator ['Nostoc azollae' 0708] gi|298234230|gb|ADI65366.1| transcriptional regulator of molybdate metabolism, XRE family ['Nostoc azollae' 0708] Length = 377 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++ R LGMSQ++L +T Q + E G+ + +++ L + Sbjct: 6 HLRNNLKSIRTRLGMSQQELANLAAVTRQTISGVESGLYAPSVAISLRLAKALGCQVEEL 65 Query: 74 F 74 F Sbjct: 66 F 66 >gi|257877769|ref|ZP_05657422.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811935|gb|EEV40755.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 74 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q ++ L I+ +YE G + L ++ + I + ++ Sbjct: 3 QRIRDLREDNDLTQHQIATLLNISQSTYSRYENGELEIPIQTLIKLANYYNTSIDYLVNM 62 Query: 77 SPTVCSDISSE 87 + S ++E Sbjct: 63 TDVRTSYKANE 73 >gi|218185799|gb|EEC68226.1| hypothetical protein OsI_36225 [Oryza sativa Indica Group] Length = 200 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 36/100 (36%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M V + V RIR R +S ++L ++ + + EKG + L Sbjct: 8 MTEQGADVAQVSLAVANRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 ++ L ++ +VS + ++ + + G Sbjct: 68 KLAAALGVSVADIVNVSSEPVVHVIEKQAIPVLWQGAKGG 107 >gi|182625324|ref|ZP_02953098.1| phage transcriptional regulator [Clostridium perfringens D str. JGS1721] gi|177909482|gb|EDT71929.1| phage transcriptional regulator [Clostridium perfringens D str. JGS1721] Length = 123 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFFFDV 76 +I+ R + ++Q++ + LGI+ + E G N+ G S ++ +SEV IS+F D Sbjct: 5 KIKQSRKEMNLTQQEFAKLLGISRGNLGDLENGKNKGGNLSLIRKLSEVTGKEISYFLDS 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 +N ++ + T + Sbjct: 65 DSEFAVKQYEVLDNAINMLITKGAI 89 >gi|29826758|ref|NP_821392.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29603854|dbj|BAC67927.1| putative transcriptional regulatory protein [Streptomyces avermitilis MA-4680] Length = 135 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 60/137 (43%), Gaps = 17/137 (12%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + +P + +G+R++ R L MSQ+ + + GI + E+G RV + L+ ++ Sbjct: 7 DNRDRDPELVRLGERLKKTRDYLNMSQQFVSDSTGIPRSAISDIERGERRVDSLELKKLA 66 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P+++F D + E ++ L R Q+ D R ++E Sbjct: 67 RLYRQPVAYFL----AEEKDADASEYSLAG---------LPRALAQLTDGDART-VLEFA 112 Query: 124 RSIV---SSEKKYRTIE 137 + ++E++ + E Sbjct: 113 EYLTLRRAAEREDQNAE 129 >gi|331086036|ref|ZP_08335119.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406959|gb|EGG86464.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 72 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R MSQ +L E L IT + + K+E+G++ + L +SE+L + Sbjct: 10 IARKRKERNMSQRELAEYLHITDKAISKWERGLSFPDITILIPLSEILGVSLYDLLTGGS 69 >gi|324325802|gb|ADY21062.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 403 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDEGKIVEL 72 >gi|322412918|gb|EFY03825.1| hypothetical protein SDD27957_00030 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 121 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V ++++ R+ +SQ+ L E L I+ Q + K+E G L ++E+ + + F Sbjct: 4 VAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTTSDLENLVRLTEIFDVNLDELF 63 Query: 75 DVSPTVCSDISSEENNVMDF 94 P EN +D Sbjct: 64 LAKPNEVKVERIYENKPLDL 83 >gi|319787703|ref|YP_004147178.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466215|gb|ADV27947.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 182 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ R G+SQ +L +G+T + E+ S L+ + + + ++ Sbjct: 1 MDIGARLQRVRTARGLSQRELARRVGVTNSTISLIEQNKVSPSVSSLKKVLDGIPISLAD 60 Query: 73 FF--DVSPTVCSDISSEENNVMD 93 FF D+ P + + D Sbjct: 61 FFTQDLDPGQPEQPFYTADELPD 83 >gi|315034706|gb|EFT46638.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315578681|gb|EFU90872.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 83 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R L ++Q++L E L ++ V+K E G + + I+E P+ + F Sbjct: 14 KMEREKLKLTQKELAEKLDLSEVYVRKLESGASSPSTKKAVIIAEFFGKPLDYLF 68 >gi|301382555|ref|ZP_07230973.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302063078|ref|ZP_07254619.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] Length = 182 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 58 MVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLV 94 >gi|294617990|ref|ZP_06697595.1| helix-turn-helix domain protein [Enterococcus faecium E1679] gi|291595799|gb|EFF27087.1| helix-turn-helix domain protein [Enterococcus faecium E1679] Length = 190 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R M+Q L I+ + E L I+ L+ I Sbjct: 1 MDIGRNIKIARKQKKMTQNDLAIKASISRSYLADVEGNRYNPSIETLDSIARALDVQIGT 60 Query: 73 FFDVSP 78 S Sbjct: 61 LLSDSS 66 >gi|257868168|ref|ZP_05647821.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257874559|ref|ZP_05654212.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257802282|gb|EEV31154.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808723|gb|EEV37545.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 72 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R ++QE+L + L I+ +YE G + L +++ + + + +++ Sbjct: 4 RIRDLREDKDLNQEQLSKLLNISQTTYSRYESGKIDIPTQSLIKLADFYSTSVDYLLNLT 63 Query: 78 P 78 Sbjct: 64 D 64 >gi|255971326|ref|ZP_05421912.1| predicted protein [Enterococcus faecalis T1] gi|256617744|ref|ZP_05474590.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256959999|ref|ZP_05564170.1| predicted protein [Enterococcus faecalis Merz96] gi|257083788|ref|ZP_05578149.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257089285|ref|ZP_05583646.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|255962344|gb|EET94820.1| predicted protein [Enterococcus faecalis T1] gi|256597271|gb|EEU16447.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256950495|gb|EEU67127.1| predicted protein [Enterococcus faecalis Merz96] gi|256991818|gb|EEU79120.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256998097|gb|EEU84617.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] Length = 250 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FF 73 + Sbjct: 84 WL 85 >gi|229490099|ref|ZP_04383947.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229322975|gb|EEN88748.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 203 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +G R+R R G++ E L E G++ + + E G R L ++ Sbjct: 15 IGPRLRTLRRDRGLTLEGLSEATGVSVSALSRLESGKRRPTLDLLLPLARA 65 >gi|228976066|ref|ZP_04136581.1| hypothetical protein bthur0003_57900 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229035173|ref|ZP_04189113.1| hypothetical protein bcere0028_51940 [Bacillus cereus AH1271] gi|228728143|gb|EEL79179.1| hypothetical protein bcere0028_51940 [Bacillus cereus AH1271] gi|228783665|gb|EEM31729.1| hypothetical protein bthur0003_57900 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326943930|gb|AEA19818.1| transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar chinensis CT-43] Length = 51 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 21/47 (44%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQ L +G+ + + E G I++VL++PI F Sbjct: 1 MSQGDLANKVGVRRETIGNLENGKYNPSLKLAYDIAKVLKAPIEVLF 47 >gi|209559928|ref|YP_002286400.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] gi|209541129|gb|ACI61705.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] Length = 195 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I R +SQE+L E + ++ Q + +E + L +S++ + ++ Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISHWENDKTYPVLASLLLLSQIFQVSLN 59 >gi|182417831|ref|ZP_02949145.1| HTH-type transcriptional regulator xre [Clostridium butyricum 5521] gi|237668782|ref|ZP_04528766.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378294|gb|EDT75826.1| HTH-type transcriptional regulator xre [Clostridium butyricum 5521] gi|237657130|gb|EEP54686.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 111 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+R R+ ++QE+L G+ ++ +YE + + ++ + + Sbjct: 5 GERLRQLRIEKNLTQEELANYFGLHKTRISQYELNKRQADDEMKKKLALYFNVSLDWL 62 >gi|194467173|ref|ZP_03073160.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454209|gb|EDX43106.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 293 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R +SQ +L L ++ Q V K+E G +L +++V + Sbjct: 8 QLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLD 61 >gi|332200001|gb|EGJ14075.1| transcriptional activator [Streptococcus pneumoniae GA47901] Length = 299 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|330469393|ref|YP_004407136.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328812364|gb|AEB46536.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 186 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 5/95 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P + +R R +G+S +L GI + + E G+ L + L+ Sbjct: 5 PSPPLATIAAALRQERQRVGISLTELARRAGIAKSTLSQLEAGLGNPSMETLWALCVALD 64 Query: 68 SPISFFFDVSPTV-----CSDISSEENNVMDFIST 97 P S + D + DF T Sbjct: 65 IPFSRLVEPPANSVRVIRAGDGPRVRSEHADFTGT 99 >gi|326385277|ref|ZP_08206940.1| putative DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326196020|gb|EGD53231.1| putative DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 108 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 1/83 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ + R +G+SQ + LG++ VQ+ E GV R + S + + + Sbjct: 24 QRLTVARQYVGLSQTEFATMLGVSTATVQRAESGVTRPRRTTFMAWSMATGVDLHWL-ET 82 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 D S P+ Sbjct: 83 GEAPSPDGDGASQGCAIRDSNPE 105 >gi|294499262|ref|YP_003562962.1| Helix-turn-helix DNA-binding protein [Bacillus megaterium QM B1551] gi|294349199|gb|ADE69528.1| Helix-turn-helix DNA-binding protein [Bacillus megaterium QM B1551] Length = 185 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 11/106 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R + ++L + G++ + K E+G + I+ L P++ Sbjct: 10 VGNELRKIRTQREFTLDELADRTGVSKLTLGKIERGETNPTLGVMWKITTGLNIPLTKLV 69 Query: 75 DVSPTVC--------SDISSEENNVMDFISTPD---GLQLNRYFIQ 109 V P+V S +E ++FI +++ R F+ Sbjct: 70 SVEPSVAVSKCGEGFSLKGPDEAWKVEFIFQNQIDSTIEMYRAFLS 115 >gi|222095409|ref|YP_002529469.1| DNA-binding protein [Bacillus cereus Q1] gi|221239467|gb|ACM12177.1| DNA-binding protein [Bacillus cereus Q1] Length = 403 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDEGKIVEL 72 >gi|221232714|ref|YP_002511868.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225855479|ref|YP_002736991.1| transcriptional activator [Streptococcus pneumoniae JJA] gi|220675176|emb|CAR69760.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225723991|gb|ACO19844.1| transcriptional activator [Streptococcus pneumoniae JJA] Length = 299 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|194292664|ref|YP_002008571.1| phage related repressor gp68 [Cupriavidus taiwanensis LMG 19424] gi|193226568|emb|CAQ72519.1| putative Gp68, phage related putative repressor, similar to bacteriophage phi Gp68 [Cupriavidus taiwanensis LMG 19424] Length = 132 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +R R G+ ++L + +G+T + E G R A L ++ LE P+ Sbjct: 71 LRAWRRFRGLPSDQLAKRVGVTRAYISMIETGRRRPAADLLHRLARELEIPV 122 >gi|126179356|ref|YP_001047321.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862150|gb|ABN57339.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 72 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI++ R + M+QE+L + + +T + + E+G I++ I F F Sbjct: 3 NRIKVFRAMHDMTQEELADAIRVTRRTINSIERGKYNPSIEVAYRIAKTFGVTIEEVFCF 62 Query: 75 DVSPTVCS 82 + Sbjct: 63 EDGEDTED 70 >gi|75910930|ref|YP_325226.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704655|gb|ABA24331.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 82 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G+ I+ R+++G++QE+ LG+TF V ++E G + +Q I +L+ Sbjct: 14 IGQFIQEIRLVMGLTQEEFAVILGVTFPTVNRWENGHTKPSKLAIQQIEALLD 66 >gi|15674958|ref|NP_269132.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|13622103|gb|AAK33853.1| putative repressor protein - phage associated [Streptococcus pyogenes M1 GAS] Length = 248 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDVS 77 ++ R+ ++ E+L E +G T + K+EKG ++ I++ P F + Sbjct: 11 VKELRLSKNLTMEQLAEEVGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMMFGDN 70 Query: 78 PTVCS 82 PT + Sbjct: 71 PTPTA 75 >gi|163938818|ref|YP_001643702.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861015|gb|ABY42074.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 112 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R +SQE+LGE GI + E+G V L +++ L+ + F Sbjct: 7 LGERIRFLRKEKNLSQERLGELSGIHTNHIGAIERGEKNVTLESLAKVTKGLDITLEELF 66 Query: 75 DVSPTVCSDISSEENNVMDFI--STPDGLQLN 104 + D + N +M+ + T + L Sbjct: 67 RYLQPM--DKLDDLNTIMELLLSRTSEDHALV 96 >gi|330876473|gb|EGH10622.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 182 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 58 MVEFFSEETVPENSAQVVYKASELIDISDGAVTMKLV 94 >gi|327396677|dbj|BAK14098.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 203 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+IN+G R++L R M+ ++L + ++ + + E+ + L+ + VL P+ Sbjct: 16 VEINIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRVLEQLRVVLNVPL 75 Query: 71 SFFFD 75 + F + Sbjct: 76 TAFLE 80 >gi|319780300|ref|YP_004139776.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166188|gb|ADV09726.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 193 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R +LG+S E+LG +G+T + K E + L + + L ++ F Sbjct: 10 IGVKLRHARQVLGLSLEELGARIGLTEGYLSKIENDRATPSMAALHRLVQALGINMNAMF 69 Query: 75 DVSPTVCSDI 84 S++ Sbjct: 70 GTLQHNASEV 79 >gi|317487075|ref|ZP_07945882.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921647|gb|EFV42926.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 116 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I RR + G +Q + E +G+ + + E+G RL+ ++ +LE + F Sbjct: 13 VGANITARRKLKGWTQAEFAEKMGMGPDSLSRIERGTVAPRFPRLEEMARLLECSPADLF 72 Query: 75 DVSPTVCSDISSE 87 + +IS + Sbjct: 73 RSPDEILQEISGK 85 >gi|315655012|ref|ZP_07907916.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315490668|gb|EFU80289.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 326 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G +RLRR +LG++Q +L G+ + +E R+ + +++ + P Sbjct: 14 GAFLRLRRNVLGLTQAELAGMSGVPQSHISAFENHKRRISEAEETALAKAVSVP 67 >gi|303241851|ref|ZP_07328346.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590626|gb|EFL60379.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 223 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ R +SQ+ + + LGIT Q V YE L+ +++ I + Sbjct: 7 LKQLREQSRLSQKDIADYLGITRQAVASYELAKREPDYEILKKLADYFGVSIDY 60 >gi|289642165|ref|ZP_06474316.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289508011|gb|EFD28959.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 286 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G IR +R +S +L G++ + + E+G+ + A LQ I++ L Sbjct: 7 RDLGDFIRDQRKAAHISVRQLARQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEV 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 + V + + +S+ + ++ Sbjct: 67 LY-VQAGILDERASDSDVTAAVLADS 91 >gi|260575913|ref|ZP_05843908.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259021839|gb|EEW25140.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 465 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 56/138 (40%), Gaps = 25/138 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R LG++Q+ + LG++ + + E V AS + +++ + ++ Sbjct: 6 LYAGVKLREIRARLGLTQKAFADKLGVSLPYLNQMENNHRPVSASVVLALAQEFGTDVT- 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVR----------QKII 120 +D +++ + ++ P F + +R + + Sbjct: 65 -----ELTTNDAERIVSDMREALADP-------VFAAVPPPLADLRLAASNAPALARAFL 112 Query: 121 ELVRSIVSSEKKYRTIEE 138 +L R+ S ++ +++E Sbjct: 113 DLHRAYRQSHERLASLDE 130 >gi|189423556|ref|YP_001950733.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189419815|gb|ACD94213.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 197 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR +R ++ ++L E G++ + + E + L IS L+ I FFF Sbjct: 13 IGEKIRGQRQQRRLTLQELSELTGLSKPLLSQIENEQVVPPLATLLKISRGLKVDIHFFF 72 Query: 75 DVS 77 + Sbjct: 73 EDE 75 >gi|150015818|ref|YP_001308072.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902283|gb|ABR33116.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 120 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IRL R + ++Q++L +GI+ + KYE+G + ++ +F+D Sbjct: 2 IRL-RKLNNLTQKELSLTIGISKSSISKYERGELFPTKEQSIKLASYFNINSKYFYD 57 >gi|90413759|ref|ZP_01221747.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90325228|gb|EAS41725.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 125 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 9/97 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKEAREWKGLTQVHMAQQLQVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + +++ + +L +YF ++ Sbjct: 68 YGDEGI---------EILESEYKEEIDRLLQYFSRLP 95 >gi|150390025|ref|YP_001320074.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949887|gb|ABR48415.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 64 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R LG+ QE + LG+T Q + E ++ L++ + F + Sbjct: 3 NKLKTLRKELGLRQEDVANQLGVTRQTIIAIENDKYNPTLELAMKLARFLDTTVEELFQL 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|30265072|ref|NP_847449.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778382|ref|YP_021927.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|65317017|ref|ZP_00389976.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870871|ref|ZP_02215523.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|228930058|ref|ZP_04093068.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948759|ref|ZP_04111036.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124568|ref|ZP_04253753.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201] gi|30259749|gb|AAP28935.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47552087|gb|AAT34402.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164713380|gb|EDR18905.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|228658908|gb|EEL14563.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201] gi|228810891|gb|EEM57235.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829557|gb|EEM75184.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 79 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+ + P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVE 65 Query: 72 FFF 74 F Sbjct: 66 EIF 68 >gi|332716117|ref|YP_004443583.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] gi|325062802|gb|ADY66492.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] Length = 182 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L G+T + E + L+ I + PI Sbjct: 1 MSVDIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P + +++ Sbjct: 59 GLAEFFAYEPETSRKAFYRADELVEI 84 >gi|322374196|ref|ZP_08048729.1| putative transcriptional repressor [Streptococcus sp. C150] gi|321276901|gb|EFX53973.1| putative transcriptional repressor [Streptococcus sp. C150] Length = 66 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ ++Q+ L + +G++ Q + EKG + I + L+ + F Sbjct: 5 KLKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLF 61 >gi|257086213|ref|ZP_05580574.1| predicted protein [Enterococcus faecalis D6] gi|256994243|gb|EEU81545.1| predicted protein [Enterococcus faecalis D6] Length = 250 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FF 73 + Sbjct: 84 WL 85 >gi|256761630|ref|ZP_05502210.1| predicted protein [Enterococcus faecalis T3] gi|256682881|gb|EEU22576.1| predicted protein [Enterococcus faecalis T3] Length = 250 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FF 73 + Sbjct: 84 WL 85 >gi|240142150|ref|YP_002966660.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|240012094|gb|ACS43319.1| Putative transcriptional regulator [Methylobacterium extorquens AM1] Length = 106 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 16/117 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPIS 71 ++ G RI+ R M+ ++L G + V + E K R A +L I+ L + Sbjct: 1 MSFGPRIKELRTAKRMTLDQLAAATGSSKSYVWELENKNPPRPSAEKLSAIAAALGVTVD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + D + F GL ++++ E+ +++ Sbjct: 61 YLLGSDSQSLGDAQDQA-----FFREYSGLH----------PDTKRQLREIAKTLGG 102 >gi|228994694|ref|ZP_04154506.1| hypothetical protein bpmyx0001_53640 [Bacillus pseudomycoides DSM 12442] gi|229008870|ref|ZP_04166235.1| hypothetical protein bmyco0002_56090 [Bacillus mycoides Rock1-4] gi|228752393|gb|EEM02056.1| hypothetical protein bmyco0002_56090 [Bacillus mycoides Rock1-4] gi|228765003|gb|EEM13745.1| hypothetical protein bpmyx0001_53640 [Bacillus pseudomycoides DSM 12442] Length = 51 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQE L +G+ + + E G I++VL++PI F Sbjct: 1 MSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLF 47 >gi|229197048|ref|ZP_04323786.1| transcriptional regulator/TPR domain protein [Bacillus cereus m1293] gi|228586468|gb|EEK44548.1| transcriptional regulator/TPR domain protein [Bacillus cereus m1293] Length = 440 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S ++ +S+ L+ + Sbjct: 18 MEIGERIRYVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKVSKKLDVDSDY 76 Query: 73 FFDVS 77 + + Sbjct: 77 LINGN 81 >gi|298346441|ref|YP_003719128.1| hypothetical protein HMPREF0573_11315 [Mobiluncus curtisii ATCC 43063] gi|304389820|ref|ZP_07371779.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236502|gb|ADI67634.1| hypothetical protein HMPREF0573_11315 [Mobiluncus curtisii ATCC 43063] gi|304326996|gb|EFL94235.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 326 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G +RLRR +LG++Q +L G+ + +E R+ + +++ + P Sbjct: 14 GAFLRLRRNVLGLTQAELAGMSGVPQSHISAFENHKRRISEAEETALAKAVSVP 67 >gi|256376030|ref|YP_003099690.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920333|gb|ACU35844.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 512 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 26/56 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG IR R G SQ +L + + + + E+G + L ISE L+S I Sbjct: 13 VGGLIRASRRQRGWSQAQLATAVSTSQSAINRIEQGGQNLSLEMLSRISEALDSGI 68 >gi|261368490|ref|ZP_05981373.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569479|gb|EFB75014.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 153 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF---QQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G +IR R M+Q +LGE +G+ ++ +YE G +L I+ L P Sbjct: 1 MKIGVKIRQIRQHRHMTQRELGEKIGLGKNGANRIAQYEMGYRTPKRDQLNKIAHALNVP 60 >gi|209546650|ref|YP_002278568.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537894|gb|ACI57828.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 276 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G ++R R G SQ L GI+ +Q+ E G + G L H+++ L+ P+ Sbjct: 14 LGAQLRAWRGARGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLADALDVPL 69 >gi|116249086|ref|YP_764927.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253736|emb|CAK12129.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] Length = 182 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 1 MSVDIGSRLRYLRIANKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 59 GLAEFFAFEPERPRKAFYAAEELVEI 84 >gi|50914249|ref|YP_060221.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|50903323|gb|AAT87038.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 232 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ G++Q +LG L + + +EKG N L + + +F Sbjct: 4 GHQLKTARLSKGITQSELGGLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYF 61 >gi|19705293|ref|NP_602788.1| transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713260|gb|AAL94087.1| Transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 106 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K IR RR L ++QE+ G++F ++++E + L I+ Sbjct: 19 NIKTPKEIQLEIAKNIRKRRKELKLTQEEFSRKSGVSFGSIKRFEN-TGEISLFSLIKIA 77 Query: 64 EVLES 68 +LE Sbjct: 78 IILEC 82 >gi|86143064|ref|ZP_01061486.1| regulatory protein [Leeuwenhoekiella blandensis MED217] gi|85830509|gb|EAQ48968.1| regulatory protein [Leeuwenhoekiella blandensis MED217] Length = 244 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ K+++ R +SQ+K+ E LGIT E G N + L +S++ P Sbjct: 1 MSISKQLKTLRESSSLSQKKVAEELGITQGAYSLIENGQNSITTEHLLTLSKLYSVP 57 >gi|332072175|gb|EGI82661.1| transcriptional activator [Streptococcus pneumoniae GA41301] Length = 299 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|317495916|ref|ZP_07954279.1| hypothetical protein HMPREF0432_00882 [Gemella moribillum M424] gi|316914093|gb|EFV35576.1| hypothetical protein HMPREF0432_00882 [Gemella moribillum M424] Length = 214 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG RI+ R+ G + E G+ G++ V K+E+G + RL IS++ + ++ Sbjct: 18 VGSRIKQIRLNKGYTLEAFGKLFGVSKSNVLKWEQGQSLPNKERLASISKIADMSVN 74 >gi|304315449|ref|YP_003850596.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588908|gb|ADL59283.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 67 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 IR R LG++QE+L E +G+T Q + E+G I+ L Sbjct: 5 IREYRNKLGLTQEELAEMVGVTRQTIITLERGRYNPSLILAHRITRALG 53 >gi|260583645|ref|ZP_05851393.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC 700633] gi|260158271|gb|EEW93339.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC 700633] Length = 133 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + R +SQE+L + +G + V +E G + +L +S+ I + +S Sbjct: 7 LSELRREKRLSQEELAKIIGTSQSSVGHWESGRRNIPQDKLLQLSKYFNVSIDYLLGISK 66 Query: 79 T 79 + Sbjct: 67 S 67 >gi|257884151|ref|ZP_05663804.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819989|gb|EEV47137.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 370 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 6 LSKNVANLRKEKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELL 65 Query: 75 DVSPTVCSD 83 P + + Sbjct: 66 GYHPQLTKE 74 >gi|257066681|ref|YP_003152937.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798561|gb|ACV29216.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 134 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R+ M+QE++ E + ++ Q + +E + +S++ E + Sbjct: 1 MKIGDKLKEARLKKNMTQEEVAEKIFVSRQSISNWENNKTYPDIGNVIALSDLYEISLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 S + + V Sbjct: 61 LLKGSDNFMKHLEESTDLV 79 >gi|169334129|ref|ZP_02861322.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] gi|169258846|gb|EDS72812.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] Length = 294 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R L +SQE+ E +G++ Q + K+E + I + + I ++ Sbjct: 5 QKLKQIRKKLNLSQEQFAEKIGVSRQAITKWETEGGIADIDNIIRIPKEFDISID---EL 61 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 + NN DF+ + + Sbjct: 62 LKEEKN-----INNKKDFLYSSET 80 >gi|167770470|ref|ZP_02442523.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM 17241] gi|167667065|gb|EDS11195.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM 17241] Length = 71 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 KR++ R G SQ + LGIT + +KYE G + S + +++ + + + Sbjct: 5 KRLKELRNAKGTSQIAIAAALGITDRGYRKYEAGDSEPTLSVIIALADYFDVSLDYL 61 >gi|99078239|ref|YP_611497.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99035377|gb|ABF62235.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 190 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++G R+R R +SQ L + G+ + E G L+ I + + +S Sbjct: 10 DEDLGPRLRSVREKANLSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGIPISLS 69 Query: 72 FFFDVSPTVCSDISSEENNVMDF 94 FF P ++ + Sbjct: 70 DFFAFEPETEKASFYAAEDLTEI 92 >gi|69245848|ref|ZP_00603665.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|258615560|ref|ZP_05713330.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO] gi|293563472|ref|ZP_06677920.1| helix-turn-helix domain protein [Enterococcus faecium E1162] gi|294620815|ref|ZP_06700019.1| protein with helix-turn-helix motif [Enterococcus faecium U0317] gi|314947741|ref|ZP_07851148.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|68195550|gb|EAN09992.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|291599600|gb|EFF30613.1| protein with helix-turn-helix motif [Enterococcus faecium U0317] gi|291604474|gb|EFF33960.1| helix-turn-helix domain protein [Enterococcus faecium E1162] gi|313645721|gb|EFS10301.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 265 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEV 65 PNP GKRI+ R+ G + E+LG + + + +E+G N +L+ +S + Sbjct: 2 KPNP--SEAGKRIKQLRLSCGFTMEELGRKIDNSPRATISNWERGTNLPNPQKLKLLSTI 59 Query: 66 LESPISF 72 S I + Sbjct: 60 TNSTIDW 66 >gi|313680009|ref|YP_004057748.1| XRE family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152724|gb|ADR36575.1| transcriptional regulator, XRE family [Oceanithermus profundus DSM 14977] Length = 71 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ + R G SQ L E LG++ Q V EKG I+ V I F+ Sbjct: 3 NRLPVLRAERGWSQAALAERLGVSRQTVNAIEKGRYDPSLPLAFKIAAVFGLAIEDVFEP 62 Query: 77 SPTVC 81 + Sbjct: 63 EESEA 67 >gi|291543704|emb|CBL16813.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 75 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KR+++ R+ M+QE+L + +G+T Q + E+G I + L+ + F Sbjct: 4 KRMKIARIAHDMNQEELAKRVGVTRQTIGMIEQGNYNPTLKLCMAICDALDCTLDTLF 61 >gi|256844059|ref|ZP_05549546.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256613964|gb|EEU19166.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] Length = 68 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R ++QE L + + ++ Q + EKG + I + L+ + F Sbjct: 5 RMKAARAGKDLTQEDLAQKVDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLF 61 >gi|229017069|ref|ZP_04173988.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] gi|229023250|ref|ZP_04179760.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228738044|gb|EEL88530.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228744242|gb|EEL94325.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] Length = 404 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-KLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62 Query: 75 DVSPTVCSDISSEENNVM 92 + ++ ++ ++ Sbjct: 63 EDDDGEIVELITKMEQLI 80 >gi|222530395|ref|YP_002574277.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457242|gb|ACM61504.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 104 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G ++ RM MS+++L + L ++ + KYE+G + L I++ + + Sbjct: 1 MNFGGILKDLRMQKKMSRQELAKMLELSESAIAKYEEGQRSPDLNTLIKIAKFFDVSTDY 60 Query: 73 FFDVS--PTVCSDISSEENNVMDF-ISTPD 99 ++ P D+S E ++ + P+ Sbjct: 61 LLGLTNIPKPEMDLSPELKQLLAIALRMPE 90 >gi|194397247|ref|YP_002038409.1| transcriptional regulator [Streptococcus pneumoniae G54] gi|194356914|gb|ACF55362.1| transcriptional regulator [Streptococcus pneumoniae G54] Length = 383 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDXSVIAFRNAD-LATRKTID 89 >gi|168494769|ref|ZP_02718912.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] gi|183575326|gb|EDT95854.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] Length = 273 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|114569540|ref|YP_756220.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114340002|gb|ABI65282.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 67 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R+ R SQ +LGE +G++ Q + E G + + ++ E I FD Sbjct: 3 NRLRVLRAERRWSQAELGERVGVSRQAINAVETGKHDPSLTLAFALAGAFELAIEAVFDP 62 Query: 77 SPTV 80 + Sbjct: 63 NGEA 66 >gi|89097987|ref|ZP_01170873.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] gi|89087150|gb|EAR66265.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] Length = 187 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K+ N + N+G+ +R R G+S + E G++ + + E+G + + L I+ Sbjct: 3 EKMEN-IHKNIGENLRNIRRSRGLSLDMAAEATGVSKAMLGQIERGESNPTVTTLWKIAS 61 Query: 65 VLESPISFFFDVSPTVCS 82 L+ S + S Sbjct: 62 GLQISFSSLMAEKSSEVS 79 >gi|317471258|ref|ZP_07930622.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] gi|316901266|gb|EFV23216.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] Length = 155 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I L R G++Q +LGE +G+T + V ++E G + + + E E I+ Sbjct: 21 IGIFIALLRRERGITQAELGEKIGVTNKTVSRWENGNYMPDIATMLSLCEEFEISINELL 80 Query: 75 DVSPTVCSDISSEENN 90 + + + Sbjct: 81 SGQRLGSDEFRKKADE 96 >gi|303239263|ref|ZP_07325792.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593308|gb|EFL63027.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 138 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 5/94 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPIS 71 + G +I+ R I GMSQ++L G++ + +Q YE S L + +VL + I Sbjct: 1 MLFGDKIKELRTIAGMSQQELANNAGLSLRSIQNYESNKRYPKDVSILNRLCKVLNTTI- 59 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + T ++ E + D +L Sbjct: 60 ---EELMTEKANFIQEASEKYGSSRKKDAKKLVE 90 >gi|225570756|ref|ZP_03779779.1| hypothetical protein CLOHYLEM_06859 [Clostridium hylemonae DSM 15053] gi|225160218|gb|EEG72837.1| hypothetical protein CLOHYLEM_06859 [Clostridium hylemonae DSM 15053] Length = 199 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR +R GM+ ++L E G++ + E+ N +Q I E + + Sbjct: 24 IGYSIRSQRRKKGMTLQQLSEATGLSIGYLSNLERNANSPTLVNIQKICEAFGTSLFSLL 83 Query: 75 DVSPTVCSDISSEENNVM 92 +++ + E + Sbjct: 84 EMNKEEDIIVRHNEREPI 101 >gi|160221335|gb|ABX11276.1| XRE-like transcriptional regulator [Burkholderia sp. MBA4] Length = 189 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 10/115 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L + ++ GI+ + + E+G+ + L I+ L + +F Sbjct: 13 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGVKVQYFV 72 Query: 75 DVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 D S + E F + G QL +++ + R ++ Sbjct: 73 DTPSEERSVCRANELKFFGFADSANLFARMTNLSGGRQLEAILVRMPPGQKRSEV 127 >gi|170758899|ref|YP_001786628.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405888|gb|ACA54299.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] Length = 177 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G++I+ R G++ ++L E ++ + E+ +N S LQ I EVL Sbjct: 1 MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGI 56 >gi|168183094|ref|ZP_02617758.1| DNA-binding protein [Clostridium botulinum Bf] gi|182673878|gb|EDT85839.1| DNA-binding protein [Clostridium botulinum Bf] Length = 177 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G++I+ R G++ ++L E ++ + E+ +N S LQ I EVL Sbjct: 1 MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGI 56 >gi|160887304|ref|ZP_02068307.1| hypothetical protein BACOVA_05322 [Bacteroides ovatus ATCC 8483] gi|255690853|ref|ZP_05414528.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|156107715|gb|EDO09460.1| hypothetical protein BACOVA_05322 [Bacteroides ovatus ATCC 8483] gi|260623485|gb|EEX46356.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|295087085|emb|CBK68608.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 135 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 14/133 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP--I 70 +VG+ ++ R+ LGM QE L LG+ Q + K EK + L+ I+EVL + Sbjct: 12 RHVGRNLQRIRVYLGMKQEALAADLGVNQQVISKIEK-QEEIEEGFLKRIAEVLGISEEV 70 Query: 71 SFFFDVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 FDV T+ + ++ N+ + +T + + + +KI+EL ++ Sbjct: 71 IKDFDVEKTIFNINHHNYKDANISEGATT---------YAIVQQINPLEKIVELYERLLK 121 Query: 129 SEKKYRTIEEECM 141 SE+ I ++ M Sbjct: 122 SEQDKIEILKKYM 134 >gi|148379223|ref|YP_001253764.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934065|ref|YP_001383597.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937268|ref|YP_001387146.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|153941321|ref|YP_001390589.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|168178665|ref|ZP_02613329.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|170754457|ref|YP_001780864.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|226948506|ref|YP_002803597.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|237794524|ref|YP_002862076.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148288707|emb|CAL82789.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152930109|gb|ABS35609.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933182|gb|ABS38681.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|152937217|gb|ABS42715.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|169119669|gb|ACA43505.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|182671253|gb|EDT83227.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226842469|gb|ACO85135.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|229263464|gb|ACQ54497.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|295318667|gb|ADF99044.1| DNA-binding protein [Clostridium botulinum F str. 230613] gi|322805558|emb|CBZ03123.1| transcriptional regulator, MerR family, near polyamine transporter [Clostridium botulinum H04402 065] Length = 177 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G++I+ R G++ ++L E ++ + E+ +N S LQ I EVL Sbjct: 1 MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGI 56 >gi|83942889|ref|ZP_00955349.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83954060|ref|ZP_00962780.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841097|gb|EAP80267.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83845897|gb|EAP83774.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 132 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 11/121 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R M+Q L + LGI ++ +E ++ A+RL ++ VL + + + Sbjct: 16 GDRVAAARENADMTQAALAKRLGIKQSTLRGWEDDLSEPRANRLSTLAGVLGVSMMWLIN 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + L I+ +R +++ + EKK R Sbjct: 76 GEGEGIDAPDDTAATDANI---KEAL--------IELRDMRADLLKRAEQMGRLEKKLRR 124 Query: 136 I 136 I Sbjct: 125 I 125 >gi|332968908|gb|EGK07955.1| DNA-binding protein [Kingella kingae ATCC 23330] Length = 123 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 54/122 (44%), Gaps = 12/122 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-- 70 + V +IR+ R I SQE++ E L ++ K E+G + +L+ I+++ + Sbjct: 1 MEVHDKIRVMREINQWSQEEMAEKLAMSANGYAKIERGQTNINIEKLKQIAQIFNIDMVD 60 Query: 71 -------SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +FFF + + + + + +L + + +++ ++II L+ Sbjct: 61 LIANQDKTFFFSIGDNNVNGHNLNSMDKFQLLLDAKD-ELLK--QKDKEIEALKEIIALL 117 Query: 124 RS 125 ++ Sbjct: 118 KA 119 >gi|325000733|ref|ZP_08121845.1| transcriptional regulator, XRE family protein [Pseudonocardia sp. P1] Length = 84 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D++ + R G++Q++LGE +G++ Q V + E G + ++ VLE+P+ Sbjct: 7 DVH--SDVAAARRRAGLTQKRLGELVGVSRQTVVEIEAGGYNPSTAVALRMAVVLETPVG 64 Query: 72 FFFDVSPTVCSDISSEENN 90 F ++ +D+ + ++ Sbjct: 65 ELFALADGEVADLRARRDD 83 >gi|304387680|ref|ZP_07369865.1| phage repressor [Neisseria meningitidis ATCC 13091] gi|304338290|gb|EFM04415.1| phage repressor [Neisseria meningitidis ATCC 13091] Length = 125 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ +R LG++Q + E GI + KYE+GV L + +S F Sbjct: 8 GNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGVFMPSGDVLLSFLN-MGIDVSSLF- 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 I EN+ + + + +L Y+ Q D Sbjct: 66 ---AAEQGIRPSENSEI----SKEESELLGYYRQASDN 96 >gi|296330344|ref|ZP_06872825.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676051|ref|YP_003867723.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152612|gb|EFG93480.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414295|gb|ADM39414.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 152 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+ IRL R G S +L G++ + K E+GV+ L+ IS LE ++ Sbjct: 2 IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKISATLEVELTEL 61 Query: 74 FDVSPTVCSDISSEENN 90 FD + IS E Sbjct: 62 FDAETMMYEKISGGEEE 78 >gi|291560882|emb|CBL39682.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 253 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 13 VTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVT 65 >gi|291549688|emb|CBL25950.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 253 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 13 VTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVT 65 >gi|257081119|ref|ZP_05575480.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256989149|gb|EEU76451.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] Length = 250 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FF 73 + Sbjct: 84 WL 85 >gi|228942196|ref|ZP_04104736.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975125|ref|ZP_04135684.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981764|ref|ZP_04142059.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis Bt407] gi|228777876|gb|EEM26148.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis Bt407] gi|228784646|gb|EEM32666.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817530|gb|EEM63615.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 79 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFF 74 F Sbjct: 66 EIF 68 >gi|229029469|ref|ZP_04185551.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] gi|228731822|gb|EEL82722.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] Length = 404 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-KLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62 Query: 75 DVSPTVCSDISSEENNVM 92 + ++ ++ ++ Sbjct: 63 EDDDGEIVELITKMEQLI 80 >gi|311741369|ref|ZP_07715193.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303539|gb|EFQ79618.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 64 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ+ L LG++ Q V EKG I+ I F Sbjct: 3 NRLKEIRESKGLSQQGLATELGVSRQTVISIEKGRYDPSLPLAFQIARHFSCRIEDIF 60 >gi|171779391|ref|ZP_02920355.1| hypothetical protein STRINF_01236 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282008|gb|EDT47439.1| hypothetical protein STRINF_01236 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 298 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+GK +L R G+SQ+++ + I+ Q+ ++E+GV+ + A L E + I+ F Sbjct: 4 NLGKCFKLLRESKGLSQKEIAGEV-ISIAQLSRFERGVSNINADTLYQCLENMNVSIAEF 62 >gi|167766444|ref|ZP_02438497.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] gi|167711853|gb|EDS22432.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] Length = 260 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 20 VTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVT 72 >gi|167756113|ref|ZP_02428240.1| hypothetical protein CLORAM_01633 [Clostridium ramosum DSM 1402] gi|237734098|ref|ZP_04564579.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704105|gb|EDS18684.1| hypothetical protein CLORAM_01633 [Clostridium ramosum DSM 1402] gi|229382924|gb|EEO33015.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 76 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KRIR R ++Q++L E L ++ + +YE+G + L ++ E+ + + + Sbjct: 4 KRIRDLREDKDLTQKQLAEYLNVSQKSYSRYERGERTIDPEILSKLATFHETTVDYLIE 62 >gi|167756112|ref|ZP_02428239.1| hypothetical protein CLORAM_01632 [Clostridium ramosum DSM 1402] gi|237734097|ref|ZP_04564578.1| predicted protein [Mollicutes bacterium D7] gi|167704104|gb|EDS18683.1| hypothetical protein CLORAM_01632 [Clostridium ramosum DSM 1402] gi|229382923|gb|EEO33014.1| predicted protein [Coprobacillus sp. D7] Length = 73 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 33/66 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R G +QEK+ + L + + +YE G + + L ++ + ++ + + + Sbjct: 5 KRLKELRTKYGYTQEKVAKYLHVDQKTYSRYELGQHEMTPDTLGKLATLYDTSVDYLIER 64 Query: 77 SPTVCS 82 + + S Sbjct: 65 TDNIKS 70 >gi|218781485|ref|YP_002432803.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762869|gb|ACL05335.1| transcriptional regulator of molybdate metabolism, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 372 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 24/56 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++ R G+SQ +L + +G+ Q + E G ++ L + + Sbjct: 8 ISCKVKQYRQEAGVSQAQLADLVGVKRQAIYDIESGKYLPNTGVALKLARHLGATV 63 >gi|163754238|ref|ZP_02161361.1| transcriptional regulator [Kordia algicida OT-1] gi|161326452|gb|EDP97778.1| transcriptional regulator [Kordia algicida OT-1] Length = 255 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 32/73 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+ K I+ R + SQE+ E LG + V YE+G + RL +S+ + PI Sbjct: 2 RNIQKNIKHLRSLKSFSQERFAETLGWSRSMVGSYEEGRSEPPIDRLIDLSDHFKLPIDI 61 Query: 73 FFDVSPTVCSDIS 85 T D S Sbjct: 62 LVKNDLTQAKDTS 74 >gi|163745028|ref|ZP_02152388.1| DNA-binding protein [Oceanibulbus indolifex HEL-45] gi|161381846|gb|EDQ06255.1| DNA-binding protein [Oceanibulbus indolifex HEL-45] Length = 227 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S + + + G++ V + E+G + + L +++ L+ + D Sbjct: 53 ARLKEARQGQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLDG 112 Query: 77 SPTVCS 82 +PT Sbjct: 113 APTEAQ 118 >gi|18978166|ref|NP_579523.1| inosine-5'-monophosphate dehydrogenase related protein I [Pyrococcus furiosus DSM 3638] gi|18893973|gb|AAL81918.1| inosine-5'-monophosphate dehydrogenase related protein I [Pyrococcus furiosus DSM 3638] Length = 187 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IP P+D + IR R LG++QE+L G+T + K E G S I L Sbjct: 4 IPRPIDP---RDIRRIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNKILRAL 60 >gi|54310636|ref|YP_131656.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46915079|emb|CAG21854.1| Hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 125 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 9/97 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKEAREWKGLTQVHMAQQLQVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + +++ + +L +YF ++ Sbjct: 68 YGDEGI---------EILESEYKEEIDRLLQYFSRLP 95 >gi|315038300|ref|YP_004031868.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|312276433|gb|ADQ59073.1| putative transcriptional regulator [Lactobacillus amylovorus GRL 1112] Length = 112 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I R M+Q +L + GI + K EKG +V + L+ I+ L D+ Sbjct: 9 QKIINYREAQDMTQAELADKSGIERTALNKIEKGTRKVSSDELKAIALALNISADTLLDL 68 Query: 77 SPTVCS 82 + + + Sbjct: 69 NGSELT 74 >gi|300702647|ref|YP_003744247.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299070308|emb|CBJ41600.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 113 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P P+ +G+RI+ R SQE L + + E+G+ L ++ Sbjct: 13 STSRPAPILTALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSIETLANLC 72 Query: 64 EVLESPISFFFDVSPTVCSDISS 86 L ++ F V + + Sbjct: 73 YALNVTLAELFGPLDGVSLEPTG 95 >gi|257870000|ref|ZP_05649653.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804164|gb|EEV32986.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 112 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 I+ R+ ++Q+++ + +GIT YE G S LQ ++++ + Sbjct: 6 IKKLRLEKKLTQQEVADKIGITRPAYTAYESGKREPDFSMLQVLADLFGVSTDYL 60 >gi|229084977|ref|ZP_04217229.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44] gi|228698293|gb|EEL51026.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44] Length = 193 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I+ R G++ ++L E ++ + + E+G+ + L+ +++V E ++ Sbjct: 1 MNIGMEIKKLRAEKGITLKELSEKSELSVGFLSQLERGLTTIAVDSLEKLADVFEVHLTH 60 Query: 73 FFD 75 FFD Sbjct: 61 FFD 63 >gi|284029517|ref|YP_003379448.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808810|gb|ADB30649.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 184 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 5/114 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D+ G +R R G+S ++ + G+ + + E G L + LE Sbjct: 6 PLDVIAGS-LRRERARAGLSLSEVAKRAGVAKSTLSQLESGTGNPSVETLWALCVALEIQ 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + D I ++E + L R+ I + Sbjct: 65 FADLIDPPRPRVQVIRADEGPAIYSEQADYSATLVAS----CPPNARRDIYRIA 114 >gi|126700757|ref|YP_001089654.1| putative transcriptional regulator [Clostridium difficile 630] gi|115252194|emb|CAJ70032.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 66 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+Q +L + +G+ + + E G I++V ++ + F+ Sbjct: 4 KIKEYREKLLMTQNELAKLVGVRRETIVHLENGKYNPSLKLAMDIAKVFDTTVENLFEFI 63 Query: 78 PTV 80 Sbjct: 64 EEE 66 >gi|111657893|ref|ZP_01408605.1| hypothetical protein SpneT_02000935 [Streptococcus pneumoniae TIGR4] gi|332076303|gb|EGI86769.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae GA41301] Length = 271 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 28 MSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 MSQ +L E GI Q Q+ + E G GA L +++ L+ + +FFD + S Sbjct: 1 MSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSMDYFFDEQVVEEVNELS 58 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVK 114 E + T + +Y ++++VK Sbjct: 59 EFKKLAQTFITNRNYESLKYIYELENVK 86 >gi|59801268|ref|YP_207980.1| hypothetical protein NGO0867 [Neisseria gonorrhoeae FA 1090] gi|194098501|ref|YP_002001563.1| hypothetical protein NGK_0938 [Neisseria gonorrhoeae NCCP11945] gi|254493679|ref|ZP_05106850.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594735|ref|ZP_06128902.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268596937|ref|ZP_06131104.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268598888|ref|ZP_06133055.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601243|ref|ZP_06135410.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603564|ref|ZP_06137731.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682044|ref|ZP_06148906.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684254|ref|ZP_06151116.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686512|ref|ZP_06153374.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043928|ref|ZP_06569644.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293399131|ref|ZP_06643296.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62] gi|59718163|gb|AAW89568.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193933791|gb|ACF29615.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512719|gb|EEH62064.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548124|gb|EEZ43542.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268550725|gb|EEZ45744.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268583019|gb|EEZ47695.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585374|gb|EEZ50050.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587695|gb|EEZ52371.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622328|gb|EEZ54728.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624538|gb|EEZ56938.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268626796|gb|EEZ59196.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012391|gb|EFE04380.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291610545|gb|EFF39655.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62] Length = 129 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 9/80 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-- 70 + V +IR R + +QE++ E L ++ K E+G + + +L+ I+++ + Sbjct: 1 MEVHDKIRTLREVNQWTQEEMAEKLEMSVNGYSKIERGKSGINLDKLRQIAQIFNIDVVE 60 Query: 71 -------SFFFDVSPTVCSD 83 SFFF + + Sbjct: 61 LLAEQNRSFFFSIGDNTNNH 80 >gi|83955982|ref|ZP_00964493.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. NAS-14.1] gi|83839746|gb|EAP78924.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. NAS-14.1] Length = 94 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 3/83 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R+ M+ ++L E G++ + + EKG V + I+ +L P F+ Sbjct: 2 GLMIRAARLERNMTAQELAERAGVSRPLLSRVEKGDMTVSLGAVFEIATILGVP---LFE 58 Query: 76 VSPTVCSDISSEENNVMDFISTP 98 + + E + Sbjct: 59 EDDERLTARLATERRANALLRQR 81 >gi|116617488|ref|YP_817859.1| transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096335|gb|ABJ61486.1| Predicted transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 68 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R ++Q +L L +T Q V EKG I+E + PI F F Sbjct: 3 NRIQELRKSRKLTQAELAAELEVTRQTVISLEKGKYNASLFLAHRIAEFFDLPIEDVFIF 62 Query: 75 DVSP 78 + Sbjct: 63 EGGK 66 >gi|332686792|ref|YP_004456566.1| XRE family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332370801|dbj|BAK21757.1| transcriptional regulator, XRE family [Melissococcus plutonius ATCC 35311] Length = 219 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R G +Q+ L E L ++ + + +E G S L ++SE+ + F Sbjct: 6 QLKSWRNKNGWTQKDLAEKLNVSDKTISSWETGRTYPDISMLLNLSELFNISLDEFMRGD 65 Query: 78 PTVCSDISSE 87 + I + Sbjct: 66 SKMIKKIDKD 75 >gi|330957317|gb|EGH57577.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 182 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLS--GIPMSM 58 Query: 73 --FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 59 VEFFSEETVPENSAQVVYKASELIDISDGAVTMKLV 94 >gi|307628247|gb|ADN72551.1| transcriptional regulator, XRE family protein [Escherichia coli UM146] Length = 154 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASAL 60 Query: 67 ES 68 Sbjct: 61 SV 62 >gi|292657070|ref|YP_003536967.1| transcriptional regulator [Haloferax volcanii DS2] gi|291370611|gb|ADE02838.1| transcriptional regulator [Haloferax volcanii DS2] Length = 70 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R RR +SQ +L E +G+T Q + E+ ++ + + FD P Sbjct: 5 LRTRREAADLSQGELAEAVGVTRQTINAIERERYDPSLELAFKLAAYFDCRVEDLFD--P 62 Query: 79 TVCSDISS 86 + +D+++ Sbjct: 63 ELDADLTA 70 >gi|302554055|ref|ZP_07306397.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302471673|gb|EFL34766.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 82 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+ + R +S++ L E +G +Q + E+G IS+ P+ Sbjct: 4 QVHNRLAMVRAERKVSRQSLAEAVGAHYQTIGYIERGQYNPSLDLALKISKFFGLPVEAL 63 Query: 74 FDVSP 78 F + P Sbjct: 64 FSLEP 68 >gi|255974138|ref|ZP_05424724.1| transcriptional regulator [Enterococcus faecalis T2] gi|256854921|ref|ZP_05560285.1| zinc-binding transcriptional regulator [Enterococcus faecalis T8] gi|255967010|gb|EET97632.1| transcriptional regulator [Enterococcus faecalis T2] gi|256710481|gb|EEU25525.1| zinc-binding transcriptional regulator [Enterococcus faecalis T8] Length = 375 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K++ R+ G++ ++L E ++ Q + YE G A + + VL+ P SFF Sbjct: 6 KQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFPRSFF 62 >gi|227327673|ref|ZP_03831697.1| putative regulatory protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 97 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R R+ GM+QE L LG V K E G R+ HI+ +L S Sbjct: 29 LREARIEKGMTQENLANALGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDAS 81 >gi|257791668|ref|YP_003182274.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317487866|ref|ZP_07946458.1| hypothetical protein HMPREF1023_00156 [Eggerthella sp. 1_3_56FAA] gi|325830662|ref|ZP_08164083.1| putative restriction-modification system control element Bcll [Eggerthella sp. HGA1] gi|257475565|gb|ACV55885.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912992|gb|EFV34509.1| hypothetical protein HMPREF1023_00156 [Eggerthella sp. 1_3_56FAA] gi|325487408|gb|EGC89850.1| putative restriction-modification system control element Bcll [Eggerthella sp. HGA1] Length = 78 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 35/78 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N + I VG RI+ R + +SQE+ +G+ + E G V L I+ Sbjct: 1 MRNILQIKVGLRIKDLRAVHDVSQERFANKIGMDRTYLASIEVGQRNVTLQNLAKIANGF 60 Query: 67 ESPISFFFDVSPTVCSDI 84 + +S FF+ P V + Sbjct: 61 DMTLSEFFEGIPRVDPNT 78 >gi|259907093|ref|YP_002647449.1| transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|224962715|emb|CAX54170.1| transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|283476894|emb|CAY72745.1| putative transcriptional regulator [Erwinia pyrifoliae DSM 12163] Length = 85 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G+SQ+KLG GI ++ +YE+G++ + ++ VL+ P + Sbjct: 5 RLKEARLKKGLSQQKLGVLAGIDEATASARMNQYERGIHVPDFELVCRLAAVLDVPSCYL 64 Query: 74 FDVSPTVCS 82 + + + + Sbjct: 65 YTLEDELAA 73 >gi|157693836|ref|YP_001488298.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682594|gb|ABV63738.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 156 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +GK IR+ R G S ++L E ++ + K E+GV+R L+ +S LE + Sbjct: 2 IGKVIRIYRKRKGYSIQQLAEDAHVSKSYLSKIERGVHRNPSVQFLKKVSSSLEIDLQEL 61 Query: 74 FDVSPTVCSDISSEENN 90 FD + D S E+ Sbjct: 62 FDAETMMFHDAESGEHE 78 >gi|159905781|ref|YP_001549443.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159887274|gb|ABX02211.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 184 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S E++ + L I+ + Q YE+G + AS L I+ E + Sbjct: 6 KEIASRVRELRELSDISIEEMADHLKISPEIYQHYEEGTCDIPASVLYEIAHKFEVDMGL 65 Query: 73 FFDVSPT 79 T Sbjct: 66 LLTGEET 72 >gi|121634808|ref|YP_975053.1| putative phage repressor [Neisseria meningitidis FAM18] gi|218768099|ref|YP_002342611.1| putative phage repressor [Neisseria meningitidis Z2491] gi|120866514|emb|CAM10264.1| putative phage repressor [Neisseria meningitidis FAM18] gi|121052107|emb|CAM08421.1| putative phage repressor [Neisseria meningitidis Z2491] gi|254672493|emb|CBA05983.1| transcriptional regulator, Cro/CI family [Neisseria meningitidis alpha275] gi|261392641|emb|CAX50205.1| putative DNA-binding phage protein [Neisseria meningitidis 8013] gi|308389194|gb|ADO31514.1| putative phage repressor [Neisseria meningitidis alpha710] gi|319410341|emb|CBY90689.1| putative DNA-binding phage protein [Neisseria meningitidis WUE 2594] gi|325132108|gb|EGC54804.1| phage repressor [Neisseria meningitidis M6190] gi|325136414|gb|EGC59022.1| phage repressor [Neisseria meningitidis M0579] gi|325138041|gb|EGC60614.1| hypothetical protein NMBES14902_1229 [Neisseria meningitidis ES14902] gi|325142304|gb|EGC64718.1| hypothetical protein NMB9615945_1127 [Neisseria meningitidis 961-5945] gi|325198242|gb|ADY93698.1| hypothetical protein NMBG2136_0985 [Neisseria meningitidis G2136] gi|325204082|gb|ADY99535.1| hypothetical protein NMBM01240355_1010 [Neisseria meningitidis M01-240355] Length = 125 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ +R LG++Q + E GI + KYE+GV L + +S F Sbjct: 8 GNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGVFMPSGDVLLSFLN-MGIDVSSLF- 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 I EN+ + + + +L Y+ Q D Sbjct: 66 ---AAEQGIRPSENSEI----SKEESELLGYYRQASDN 96 >gi|148544031|ref|YP_001271401.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531065|gb|ABQ83064.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] Length = 111 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 34/88 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI R MSQ +L + LGI + YE + L I++ + + Sbjct: 1 MSIGNRIADLRTNNHMSQFQLAKVLGIGTSTLGMYETNKRKPSPKVLNKIADYFDVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 ++ + + I + +G Sbjct: 61 LLGRKSKADQVHNATVDEALGTIMSFEG 88 >gi|84496251|ref|ZP_00995105.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp. HTCC2649] gi|84383019|gb|EAP98900.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp. HTCC2649] Length = 511 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G IR R G++Q +L + LG + V + E+G + L + E L Sbjct: 10 IGTLIRDARRHQGLTQNELADKLGTSQSAVARIEQGRQNLSLEMLARVGETLG 62 >gi|324327242|gb|ADY22502.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 374 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 +P + + Sbjct: 64 LISYTPQMEQE 74 >gi|228943045|ref|ZP_04105546.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955927|ref|ZP_04117864.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228968662|ref|ZP_04129641.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228976622|ref|ZP_04137065.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783091|gb|EEM31227.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791025|gb|EEM38647.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228803754|gb|EEM50436.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816630|gb|EEM62754.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 133 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G+ +R R + G+S LG+ LG+T + +E G L+ +S + Sbjct: 6 DNIFGRNLRNLRNLQGLSLNALGKELGVTGSAISSWELGNKEPNFDMLKKVSGFFQVSTD 65 Query: 72 F-----FFDVSPTVCSDISSEENNVMD 93 + FD +S N + + Sbjct: 66 YMLNYQVFDDEAQRKEVVSQLANEIYE 92 >gi|284989965|ref|YP_003408519.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063210|gb|ADB74148.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 77 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R RR ++Q +L E +G++ Q + E+G I+ VL + FF Sbjct: 14 VRERRKERRITQAELAEQVGVSRQTIIAVEQGDYAPSVYLALRIARVLGGTVEEFF 69 >gi|161510949|ref|YP_001569072.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142637|ref|ZP_03567130.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|294850703|ref|ZP_06791424.1| transcriptional regulator [Staphylococcus aureus A9754] gi|302344736|ref|YP_003813121.1| hypothetical protein pSK1_p26 [Staphylococcus aureus] gi|160369758|gb|ABX30728.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|270299795|gb|ACZ68601.1| hypothetical protein SAP064A_010 [Staphylococcus aureus] gi|270300347|gb|ACZ69153.1| hypothetical protein SAP066A_022 [Staphylococcus aureus] gi|270300431|gb|ACZ69237.1| hypothetical protein SAP070B_021 [Staphylococcus aureus] gi|270300546|gb|ACZ69352.1| hypothetical protein SAP062B_011 [Staphylococcus aureus] gi|281334293|gb|ADA61377.1| hypothetical protein SAP015A_013 [Staphylococcus aureus] gi|281334660|gb|ADA61744.1| hypothetical protein SAP045A_012 [Staphylococcus epidermidis] gi|281334719|gb|ADA61803.1| hypothetical protein SAP046A_025 [Staphylococcus aureus] gi|281334822|gb|ADA61906.1| hypothetical protein SAP049A_017 [Staphylococcus aureus] gi|281334879|gb|ADA61963.1| hypothetical protein SAP050A_035 [Staphylococcus aureus] gi|281334891|gb|ADA61975.1| hypothetical protein SAP051A_010 [Staphylococcus aureus] gi|281334948|gb|ADA62032.1| hypothetical protein SAP052A_032 [Staphylococcus aureus] gi|282166272|gb|ADA80289.1| hypothetical protein SAP107B_015 [Staphylococcus epidermidis] gi|282166632|gb|ADA80648.1| hypothetical protein SAP094B_021 [Staphylococcus aureus] gi|282166656|gb|ADA80672.1| hypothetical protein SAP098A_003 [Staphylococcus aureus] gi|282166710|gb|ADA80726.1| hypothetical protein SAP101A_022 [Staphylococcus aureus] gi|282166826|gb|ADA80842.1| hypothetical protein SAP104C_023 [Staphylococcus aureus SK6575] gi|282166894|gb|ADA80910.1| hypothetical protein SAP100B_006 [Staphylococcus aureus] gi|294822453|gb|EFG38901.1| transcriptional regulator [Staphylococcus aureus A9754] gi|300492210|gb|ADK23691.1| hypothetical protein [Staphylococcus aureus] gi|302751843|gb|ADL66020.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304380376|gb|ADM28820.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304381944|gb|ADM28861.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304381983|gb|ADM28899.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304382081|gb|ADM28943.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304384184|gb|ADM28984.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304384532|gb|ADM29026.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304386475|gb|ADM29070.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304389248|gb|ADM29232.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|315195841|gb|EFU26210.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] Length = 61 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R G+SQE L + L ++ Q + E + ++ + ++ + F Sbjct: 3 NRIREYRKQKGISQETLSKELKVSRQTINAIENNKYDPTLTLAFKLARLFDTTVDELF 60 >gi|123441160|ref|YP_001005148.1| putative transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088121|emb|CAL10909.1| putative transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 196 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 3/106 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N V ++G R+R R+ ++ ++L +G + + K E V + L Sbjct: 1 MKKNGDNSGFVLSDLGMRLRHARVAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLH 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD-FIS--TPDGLQL 103 ++ LE+ IS S S + E + F+ G+ L Sbjct: 61 RLASALETNISDLMAESWVADSPVLKPEQRIRKRFMHRNKKGGIAL 106 >gi|332995751|gb|AEF05806.1| putative transcriptional regulator [Alteromonas sp. SN2] Length = 109 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R+R R +SQ+ LG +G+ ++ YEKG + L+H++E L+ P+++ Sbjct: 9 QRLREARQRADISQKNLGIRIGMEPSSASGRMNHYEKGRHIPDLQTLKHLAEELDVPLNY 68 Query: 73 FF 74 FF Sbjct: 69 FF 70 >gi|315657125|ref|ZP_07910009.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492228|gb|EFU81835.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 326 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G +RLRR +LG++Q +L G+ + +E R+ + +++ + P Sbjct: 14 GAFLRLRRNVLGLTQAELAGMSGVPQSHISAFENHKRRISEAEETALAKAVSVP 67 >gi|310825707|ref|YP_003958064.1| transcriptional repressor [Eubacterium limosum KIST612] gi|308737441|gb|ADO35101.1| transcriptional repressor [Eubacterium limosum KIST612] Length = 116 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 9/111 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIRL I M Q L + GI+ + +Y G + + +++ L ++ Sbjct: 5 IGQRIRLALEINHMRQSDLSKKTGISPSAINQYISGNFEPKQNNIYLLAKALNVNEAWLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIEL 122 D+S E ++ + T + L + F ++ + + +++ EL Sbjct: 65 ------GYDVSIERSDNSAPLITEQEVALLKLFRKLSETGQDEALKRVEEL 109 >gi|295104565|emb|CBL02109.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 106 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 12 DIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D + GKRI+ R G++QE+ L I+ + + + E+G L ++ L++ + Sbjct: 4 DAHATGKRIQKARKAHGLTQEQFAIKLNISDRHLGRIERGECAASIDLLVEVAVSLKTTL 63 Query: 71 SFF 73 F Sbjct: 64 DFL 66 >gi|229101980|ref|ZP_04232694.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] gi|228681563|gb|EEL35726.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] Length = 107 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + L+ I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 + + SE Sbjct: 62 LHDETEKEARLDSE 75 >gi|229151508|ref|ZP_04279711.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550] gi|228632051|gb|EEK88677.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550] Length = 374 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 +P + + Sbjct: 64 LISYTPQMEQE 74 >gi|227874818|ref|ZP_03992971.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|306818111|ref|ZP_07451842.1| transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|227844593|gb|EEJ54749.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|304649075|gb|EFM46369.1| transcriptional regulator [Mobiluncus mulieris ATCC 35239] Length = 69 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R +SQE+LG +G+T Q + E G I+ I FD + Sbjct: 4 KIPQLRKERKLSQEELGTAVGVTRQTITSIETGKYVASLPLAYKIAHYFGRTIEDVFDFT 63 Query: 78 PTVCS 82 S Sbjct: 64 NLEES 68 >gi|164517198|emb|CAP48673.1| putative integron gene cassette protein [uncultured bacterium] Length = 115 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ +++ VG+ +R+ R + +SQ +L E GI + E+ +G R + Sbjct: 30 MSDYRRARKRIEVTVGESVRIFRELQELSQNQLSEITGIPQSTISAIERDRVNLGVERAK 89 Query: 61 HISEVLESPIS 71 ++ L+ + Sbjct: 90 VLARALKVHPA 100 >gi|109289970|ref|YP_655502.1| CI repressor [Mannheimia phage phiMHaA1] gi|254360842|ref|ZP_04976989.1| bacteriophage repressor [Mannheimia haemolytica PHL213] gi|90110576|gb|ABD90586.1| CI repressor [Mannheimia phage phiMhaA1-PHL101] gi|90110627|gb|ABD90636.1| CI repressor [Mannheimia phage phiMhaA1-BAA410] gi|153092316|gb|EDN73385.1| bacteriophage repressor [Mannheimia haemolytica PHL213] Length = 228 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ G++QEK E +G++ V K G R +R+ I+ VL+ +++ Sbjct: 6 SRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTR-NPTRIYEIANVLDVDVNWL-KT 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 D + N + L+L Sbjct: 64 GKGEAPDFAKIGKNPTAYEEESSMLRL 90 >gi|108762155|ref|YP_628901.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108466035|gb|ABF91220.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 134 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R L ++Q + E +GI + + E+G L+ + VL Sbjct: 24 IGNAVRAARQRLELTQADVAERVGIATEVYGRLERGHMLPSVRTLRKLCLVLNCSSDVLL 83 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + +E+ ++ P+ +L R ++D ++R Sbjct: 84 GMAGVEGAPTLAEDPP--EYRERPEVRRLLRTVRKLDAPRLR 123 >gi|89896340|ref|YP_519827.1| hypothetical protein DSY3594 [Desulfitobacterium hafniense Y51] gi|89335788|dbj|BAE85383.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 201 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ I R G++Q+++ + L I+ + + K+E+G+ + +S VL + I Sbjct: 9 VGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLGCPDVTLWSGLSAVLGADI 64 >gi|53714971|ref|YP_100963.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|265766818|ref|ZP_06094647.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52217836|dbj|BAD50429.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|263253195|gb|EEZ24671.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 117 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G+ ++ R + G +QE++ + + I YE G + + L+ IS + Sbjct: 4 VNQIIGENLKKIRELSGFTQEQVAQSIKIERSTYSNYEGGTREIPYTILEDISNLFGCEP 63 Query: 71 SFFFDVSPTVCSDI 84 F+ + ++I Sbjct: 64 FILFEDNVQTNNEI 77 >gi|260060996|ref|YP_003194076.1| DNA-binding protein [Robiginitalea biformata HTCC2501] gi|88785128|gb|EAR16297.1| DNA-binding protein [Robiginitalea biformata HTCC2501] Length = 64 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR+ R +QE+L +G++ Q + EK I+ + E PI F Sbjct: 5 IRVLRAEKNWTQEQLASAIGVSRQTINAIEKEKFDPSLPTAFRIARLFEKPIEAIF 60 >gi|219667836|ref|YP_002458271.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538096|gb|ACL19835.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 198 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ I R G++Q+++ + L I+ + + K+E+G+ + +S VL + I Sbjct: 6 VGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLGCPDVTLWSGLSAVLGADI 61 >gi|320527629|ref|ZP_08028803.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131950|gb|EFW24506.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 691 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +++ L R G+SQ + + + F +E G + S ++ +S + P+ F D Sbjct: 7 EKLTLLRKHYGLSQGDVATKINVKFTDYMNWENGNSIPSISNIRKLSVLFGVPVESFID 65 >gi|317056800|ref|YP_004105267.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449069|gb|ADU22633.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 296 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++R R +SQE L +G++ Q V K+E + +S + + Sbjct: 6 KLRELRKQEKLSQEALAAKIGVSRQAVTKWETERGLPDIGNIMELSALFGVTV 58 >gi|300855490|ref|YP_003780474.1| hypothetical protein CLJU_c23140 [Clostridium ljungdahlii DSM 13528] gi|300435605|gb|ADK15372.1| conserved hypothetical protein with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 184 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 37/78 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G +++ R+ +S + + + G++ + + E+G++ S L IS L+ Sbjct: 4 LNLIIGTKLKNIRLRRNLSLDDVSKLTGVSKGMLGQIERGLSNPTVSTLWKISTGLKVSF 63 Query: 71 SFFFDVSPTVCSDISSEE 88 S F + I ++ Sbjct: 64 SSFINEKEDDLKVIHQDD 81 >gi|295092432|emb|CBK78539.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10] Length = 176 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ GM+Q+ LG +G + ++ +YE G + A +++ L+ Sbjct: 1 MAIGERIHFFRLLRGMTQKYLGTIVGFPERSADVRLAQYETGTRKPKAELTAALAQALDV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|295700669|ref|YP_003608562.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439882|gb|ADG19051.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 215 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 30/77 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 38 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 97 Query: 75 DVSPTVCSDISSEENNV 91 + + S +++ Sbjct: 98 APPKSPEAIAVSGPHDI 114 >gi|255970555|ref|ZP_05421141.1| transcriptional regulator [Enterococcus faecalis T1] gi|256760919|ref|ZP_05501499.1| transcriptional regulator [Enterococcus faecalis T3] gi|255961573|gb|EET94049.1| transcriptional regulator [Enterococcus faecalis T1] gi|256682170|gb|EEU21865.1| transcriptional regulator [Enterococcus faecalis T3] Length = 375 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K++ R+ G++ ++L E ++ Q + YE G A + + VL+ P SFF Sbjct: 6 KQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFPRSFF 62 >gi|255292223|dbj|BAH89347.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292806|dbj|BAH89908.1| XRE family transcriptional regulators [uncultured bacterium] Length = 156 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R++LG+S ++GE +G+T + K E ++ + L + L +S F Sbjct: 13 IGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNMSELF 72 Query: 75 DVSPTVCSDIS 85 S I+ Sbjct: 73 ATSSDDGLPIT 83 >gi|229170494|ref|ZP_04298145.1| hypothetical protein bcere0007_54110 [Bacillus cereus AH621] gi|228612964|gb|EEK70138.1| hypothetical protein bcere0007_54110 [Bacillus cereus AH621] Length = 163 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R I +Q++L + + +T Q V +E+ L +S++ + + Sbjct: 9 GKRIKELRNIKNWTQKELAKNIDVTSQVVSNWEREYTSPNHEDLLKMSKLFQVTTDY--- 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + ++ + N DF S + F Sbjct: 66 --ILLGNNNIKKINLNYDFESLNETFGNTLAF 95 >gi|186476299|ref|YP_001857769.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia phymatum STM815] gi|184192758|gb|ACC70723.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia phymatum STM815] Length = 317 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 17/131 (12%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 22 AEREERDPFLTAMGERVRLLRARRGMTRKTLASETGLSERHLANLESGVGNASVLVLRQI 81 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY-------FIQIDD 112 + L P++ V D ++ + + + D L R F Q Sbjct: 82 AATLNCPLA-------EVIGDETTSSAEWLLIRELLHGRDQAALQRARVALSEMFAQAPR 134 Query: 113 VKVRQKIIELV 123 R+ I L+ Sbjct: 135 DPHRKDRIALI 145 >gi|15901812|ref|NP_346416.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|111658875|ref|ZP_01409496.1| hypothetical protein SpneT_02000046 [Streptococcus pneumoniae TIGR4] gi|14973497|gb|AAK76056.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] Length = 299 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|16800304|ref|NP_470572.1| hypothetical protein lin1235 [Listeria innocua Clip11262] gi|16413709|emb|CAC96466.1| lin1235 [Listeria innocua Clip11262] Length = 61 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ R+ M+Q+++ E GI E+G R R + I+ L + FF+ Sbjct: 4 LKKYRLEKDMTQQEVAEQCGIPKTTYASIEQGKRRPSPERAKLIASKLGFDWTIFFN 60 >gi|15964050|ref|NP_384403.1| hypothetical protein SMc00377 [Sinorhizobium meliloti 1021] gi|15073226|emb|CAC41734.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 263 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G R++ R MSQ L GI+ + + E G + + ++ VL+ P Sbjct: 1 MEFGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSTPSEGMILRLASVLDVP 57 >gi|147669788|ref|YP_001214606.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270736|gb|ABQ17728.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 69 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R I ++QE+L + LGIT Q V E+G I+ + ++PI F Sbjct: 3 NKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFKTPIEEIF 60 >gi|148260500|ref|YP_001234627.1| hypothetical protein Acry_1500 [Acidiphilium cryptum JF-5] gi|146402181|gb|ABQ30708.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5] Length = 469 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G++Q+KL LGI+ + E V A+ L ++E L+ Sbjct: 6 IGRIVRRLRQEQGLTQQKLASRLGISTSYLNLIEHDQRGVTAALLIKLTETLKV------ 59 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D++ SD E + + + P Sbjct: 60 DLAALSGSDERQVEQALREAFADP 83 >gi|323483037|ref|ZP_08088431.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] gi|323403666|gb|EGA95970.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] Length = 129 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R GM+Q +L E +G+T + V K+E+ ++ + L ++ + + Sbjct: 3 IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLSYPDVNSLPKLAGIFGISVD 55 >gi|302545983|ref|ZP_07298325.1| XRE family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463601|gb|EFL26694.1| XRE family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 524 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFF 73 +G+RI R G +QE L +G + + K E+G + +L ++ VL P+ Sbjct: 123 IGERIAFYRNRRGYTQEVLAGLVGHSTDWLAKVERGRRKPPRIDKLGELARVLRVPLGDL 182 Query: 74 FDVSPTVCSDISSEEN--NVMDFISTP 98 P + D +++ V D + +P Sbjct: 183 I-GQPALLEDEKQQDDVPAVRDALMSP 208 >gi|294790069|ref|ZP_06755253.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] gi|294481992|gb|EFG29735.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] Length = 88 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV--LESPI 70 IN+G+ ++ R M+QE LG LG+T V EKG + I+++ +E P+ Sbjct: 2 INLGEWVKEARTSAKMTQESLGFELGMTKANVSNMEKGRTNPSFEHILKIAQITNMELPL 61 Query: 71 SFF 73 F Sbjct: 62 HDF 64 >gi|294495804|ref|YP_003542297.1| MerR family transcriptional regulator [Methanohalophilus mahii DSM 5219] gi|292666803|gb|ADE36652.1| transcriptional regulator, MerR family [Methanohalophilus mahii DSM 5219] Length = 190 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R MSQE+L + + + K E G + L +I+ L + F Sbjct: 7 LGEKISQLRQSREMSQEELAKASNNDVELIDKLENGALVPSLTPLFNIARALGVRLGTFL 66 Query: 75 DVSPTVCS 82 D +P Sbjct: 67 DDAPQNGP 74 >gi|262377235|ref|ZP_06070460.1| helix-turn-helix domain-containing protein [Acinetobacter lwoffii SH145] gi|262307973|gb|EEY89111.1| helix-turn-helix domain-containing protein [Acinetobacter lwoffii SH145] Length = 76 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G ++R +R + ++QEKL I + + E+G + ++ I++ LE I Sbjct: 6 VSFGLKVREQRKLKKLTQEKLALLCNIDRSYMGRIERGEVNITLEKIYEIAQALEIDI-- 63 Query: 73 FFDVSPTVCSD 83 D+ P + D Sbjct: 64 -LDLMPLIARD 73 >gi|260574980|ref|ZP_05842982.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259022985|gb|EEW26279.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 446 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR +R+ M Q +L E GI+ + E+ +G L I+ L + Sbjct: 20 GSRIRDKRLQRAMRQSELAELAGISATYLSLIERNRRSIGGKLLNQIARALAVEPVSLTE 79 Query: 76 VSPTVCSD 83 + D Sbjct: 80 GAEGALID 87 >gi|229590309|ref|YP_002872428.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens SBW25] gi|229362175|emb|CAY49077.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens SBW25] Length = 235 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 2/83 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI R G+SQ L + G Q ++ YEK + I+ L+ + Sbjct: 23 KTLGSRIAHYREKAGLSQAALAKACGWKSQSRIGNYEKDAREPNLDDISKIAHELKIDPA 82 Query: 72 FFFDVSPTVCSDISSEENNVMDF 94 + S+IS F Sbjct: 83 ALL-LPGESPSNISIAAQPTKSF 104 >gi|227878075|ref|ZP_03996063.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256843789|ref|ZP_05549276.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256849653|ref|ZP_05555085.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047762|ref|ZP_06020714.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|293381795|ref|ZP_06627770.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312977080|ref|ZP_07788829.1| transcriptional regulator [Lactobacillus crispatus CTV-05] gi|227862335|gb|EEJ69866.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256613694|gb|EEU18896.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256713769|gb|EEU28758.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260571967|gb|EEX28535.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|290921665|gb|EFD98692.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310896408|gb|EFQ45473.1| transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 66 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ +L +G+ Q + E +++ L + ++ F Sbjct: 2 NRVREYRKQKQISQMELARRIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNTLF 59 >gi|210621012|ref|ZP_03292397.1| hypothetical protein CLOHIR_00340 [Clostridium hiranonis DSM 13275] gi|210154996|gb|EEA86002.1| hypothetical protein CLOHIR_00340 [Clostridium hiranonis DSM 13275] Length = 60 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R +SQ++L + LGIT Q + E G + S+ + I++ S I F Sbjct: 2 REEKKLSQKELAKILGITQQAYSRIELGKAKPSLSKAKEIADFFNSTIEEIF 53 >gi|84686278|ref|ZP_01014173.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665805|gb|EAQ12280.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 463 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 23/115 (20%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R LG++Q+ E LG++ + + E V + +++ Sbjct: 6 LYAGVKLRETRTRLGLTQKAFAEKLGVSLPYLNQMENNNRPVSTGVVLALAQEFG----- 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP-----------------DGLQLNRYFIQI 110 FDV+ D ++ + ++ P + L R F++I Sbjct: 61 -FDVAELSTGDAERLVTDMREALADPVFADAAPPIADLRLVASNAPALARAFLEI 114 >gi|332297377|ref|YP_004439299.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180480|gb|AEE16168.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 195 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 NK++P G+++R R G + + + + G++ V + E+ L Sbjct: 4 TQNKRVPY----RFGEKLRAVRERKGYTLKVVAQRAGVSESLVSQIERNKVSPAIDTLLM 59 Query: 62 ISEVLESPISFFFD 75 +++VL+ + F F+ Sbjct: 60 LADVLDINLEFLFE 73 >gi|330866552|gb|EGH01261.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330895723|gb|EGH28013.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943309|gb|EGH45692.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330952098|gb|EGH52358.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] gi|330972181|gb|EGH72247.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 182 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 58 MVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|325479131|gb|EGC82228.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 91 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R GM+Q +LGE +G++ Q + E+G ++ V E + F++ Sbjct: 27 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSVLVALSLARVFEVKVEDIFNL 86 Query: 77 SP 78 Sbjct: 87 EE 88 >gi|294339778|emb|CAZ88140.1| putative lambda repressor [Thiomonas sp. 3As] Length = 159 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R+ G+SQ +LGE G V +YE G + + ++ L + F + Sbjct: 88 LASLRLAAGLSQRQLGEKCGWEQPHVSRYESGKHEPTLTVAMTLAAALGVGLDRFAEA 145 >gi|228920493|ref|ZP_04083838.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839123|gb|EEM84419.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 404 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE +SF Sbjct: 4 LGEKIKALRKEKKLTQTALAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDEGEIVEL 72 >gi|268592014|ref|ZP_06126235.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312406|gb|EFE52859.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 93 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 6 KIPNPVDINVG--KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N +DI + K ++ R+ ++ +LG+ L ++ QQ+ +YE G + + L Sbjct: 10 NKSNDLDIVMATAKYLKSARIEKSLTGTELGKLLNLSQQQISRYENGQSAISIDSLHIYL 69 Query: 64 EVLESP-ISFF 73 + L + +F Sbjct: 70 KALGKDWLDYF 80 >gi|148993148|ref|ZP_01822714.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|168489995|ref|ZP_02714194.1| transcriptional activator [Streptococcus pneumoniae SP195] gi|147928122|gb|EDK79140.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|183571596|gb|EDT92124.1| transcriptional activator [Streptococcus pneumoniae SP195] gi|332072071|gb|EGI82558.1| transcriptional activator [Streptococcus pneumoniae GA17570] Length = 299 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|325290127|ref|YP_004266308.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965528|gb|ADY56307.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 80 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +I+ R L M+Q++L E + + + K E G + L I+ L+ I+ D Sbjct: 5 GIQIKALRKSLNMTQKQLAELVKLDESMINKIENGHSVGSVQTLSKIAAALKVSITELLD 64 Query: 76 VSPTVCSDISSEEN 89 + E++ Sbjct: 65 DPCFPLENKKPEDD 78 >gi|324014359|gb|EGB83578.1| helix-turn-helix protein [Escherichia coli MS 60-1] Length = 70 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ RR L M+Q L E G++ Q + + E GV L +S L+ ++ Sbjct: 1 MTLATRVKERRKELKMTQVTLAELTGVSQQAINRIESGVI-ARPRYLLEMSIALDCDPNW 59 Query: 73 F 73 Sbjct: 60 L 60 >gi|315163418|gb|EFU07435.1| helix-turn-helix protein [Enterococcus faecalis TX0645] Length = 78 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 12 SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 69 >gi|295108150|emb|CBL22103.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 110 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R+R R G+SQ+++ + ++ + +YE L + + + + Sbjct: 1 MEFGNRLRKLRNQNGLSQKEVAIAISVSVNAISQYETNKRFPEPDVLVRLCKYYKISADY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 ++ S ++ E V++ + + Sbjct: 61 LLGLTEQQRSPQTTGE--VLENTLSRE 85 >gi|291279452|ref|YP_003496287.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754154|dbj|BAI80531.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 193 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R ++ +L + G + + + E+ + S L+ I++ LE I Sbjct: 13 MTIGKKVQELRQKKQLTLRQLSKLSGCSLGFLSQVERDLVSPTVSSLKKIADALEVNIMH 72 Query: 73 FFDVSPTVCSDIS-SEENNVMDFISTPDGLQLNR 105 FFD + EE N + + +L R Sbjct: 73 FFDHPSRYQRVVVKKEERNKLVNPKSKVTYELLR 106 >gi|291299563|ref|YP_003510841.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568783|gb|ADD41748.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 186 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ + +R R G+S ++ + GI + + E G G L +S L Sbjct: 5 PRPLIEVIAHALRRERDRAGLSLSEVAKRAGIAKSTLSQLEAGSGNPGVETLWALSVALN 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 P + + S + I + + + + + R+ + Sbjct: 65 VPFATLVEPSTSRVQVIRAGQGPTFA----AEHADYVATVLSASPPRARRDLY 113 >gi|227886016|ref|ZP_04003821.1| XRE family transcriptional regulator [Escherichia coli 83972] gi|227836945|gb|EEJ47411.1| XRE family transcriptional regulator [Escherichia coli 83972] Length = 138 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 11/110 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R L ++Q+ L + +G+ + +EK A +L +SE+ I + Sbjct: 28 IGLRIKEERERLSLTQQGLADAIGVAKRTFIDWEKDRTSPTAVQLSALSEI-GVDILYVV 86 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 V+ + + +L F ++ + R+ I+E+ + Sbjct: 87 ---------TGVRSQPVVAPYVSQEKKELMDAFDEM-SPEQRRAILEVGK 126 >gi|139472918|ref|YP_001127633.1| DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|134271164|emb|CAM29376.1| putative DNA-binding protein [Streptococcus pyogenes str. Manfredo] Length = 303 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++++ R+ +S+E L G+ ++ +Q+ + E G + S++ I++ L + + Sbjct: 4 HFGGKVKVLRLEKRISREDLCGDESELSVRQLARIELGQSIPSLSKVIFIAKALNVSVGY 63 Query: 73 FFDVSP 78 D + Sbjct: 64 LTDGAD 69 >gi|307278430|ref|ZP_07559505.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306504936|gb|EFM74131.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 232 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|307244410|ref|ZP_07526521.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306492229|gb|EFM64271.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 63 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +R R G +Q +L +GI+ Q + E + + VL+ I F Sbjct: 2 GNNLRQFREKRGFTQTELSTAVGISRQYLSDIETLKKQPTIKIAFDCARVLKVSIEELF 60 >gi|291619608|ref|YP_003522350.1| PuuR [Pantoea ananatis LMG 20103] gi|291154638|gb|ADD79222.1| PuuR [Pantoea ananatis LMG 20103] Length = 203 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+IN+G R++L R M+ ++L + ++ + + E+ + L+ + VL P+ Sbjct: 16 VEINIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRVLEQLRVVLNVPL 75 Query: 71 SFFFD 75 + F + Sbjct: 76 TAFLE 80 >gi|289674441|ref|ZP_06495331.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 182 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 58 MVEFFSEESVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|265750635|ref|ZP_06086698.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263237531|gb|EEZ22981.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 77 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 19/52 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I R M+Q KL E +G + + E G S I+ L + Sbjct: 20 IEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPKVSTFYRIASALGLNV 71 >gi|237713190|ref|ZP_04543671.1| transcriptional regulator [Bacteroides sp. D1] gi|262409417|ref|ZP_06085959.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647376|ref|ZP_06724969.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294809002|ref|ZP_06767724.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|229446848|gb|EEO52639.1| transcriptional regulator [Bacteroides sp. D1] gi|262352629|gb|EEZ01727.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637335|gb|EFF55760.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294443727|gb|EFG12472.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] Length = 135 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 14/131 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP--I 70 +VG+ ++ R+ LGM QE L LG+ Q + K EK + L+ I+EVL + Sbjct: 12 RHVGRNLQRIRVYLGMKQEALAADLGVNQQVISKIEK-QEEIEEGFLKRIAEVLGISEEV 70 Query: 71 SFFFDVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 FDV T+ + ++ N+ + +T + + + +KI+EL ++ Sbjct: 71 IKDFDVEKTIFNINHHNYKDANISEGATT---------YAIVQQINPLEKIVELYERLLK 121 Query: 129 SEKKYRTIEEE 139 SE+ I ++ Sbjct: 122 SEQDKIEILKK 132 >gi|229090748|ref|ZP_04221981.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] gi|228692690|gb|EEL46416.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] Length = 403 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|227555210|ref|ZP_03985257.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|256958526|ref|ZP_05562697.1| transcriptional regulator [Enterococcus faecalis DS5] gi|257078158|ref|ZP_05572519.1| transcriptional regulator [Enterococcus faecalis JH1] gi|257088416|ref|ZP_05582777.1| transcriptional regulator [Enterococcus faecalis D6] gi|257418088|ref|ZP_05595082.1| transcriptional regulator [Enterococcus faecalis T11] gi|294780734|ref|ZP_06746094.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307270000|ref|ZP_07551325.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307283890|ref|ZP_07564063.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307288073|ref|ZP_07568089.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|307290765|ref|ZP_07570663.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|227175668|gb|EEI56640.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|256949022|gb|EEU65654.1| transcriptional regulator [Enterococcus faecalis DS5] gi|256986188|gb|EEU73490.1| transcriptional regulator [Enterococcus faecalis JH1] gi|256996446|gb|EEU83748.1| transcriptional regulator [Enterococcus faecalis D6] gi|257159916|gb|EEU89876.1| transcriptional regulator [Enterococcus faecalis T11] gi|294452174|gb|EFG20616.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306498185|gb|EFM67704.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306500951|gb|EFM70266.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306503540|gb|EFM72787.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306513665|gb|EFM82272.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|315026105|gb|EFT38037.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315028652|gb|EFT40584.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315033008|gb|EFT44940.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035227|gb|EFT47159.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315147020|gb|EFT91036.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315163543|gb|EFU07560.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315574630|gb|EFU86821.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315580864|gb|EFU93055.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|327536374|gb|AEA95208.1| cro/CI family zinc-binding transcriptional regulator [Enterococcus faecalis OG1RF] gi|329577544|gb|EGG58980.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 379 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K++ R+ G++ ++L E ++ Q + YE G A + + VL+ P SFF Sbjct: 10 KQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFPRSFF 66 >gi|223937259|ref|ZP_03629165.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223894044|gb|EEF60499.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 73 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N+K +G+ +R +R G SQEKL E ++ V + E+G L Sbjct: 1 MLANQKHR----RLLGEAVRAKRKEAGFSQEKLAEKADLSAVFVSRIERGKESPTLDNLV 56 Query: 61 HISEVLESPI 70 I++ L + + Sbjct: 57 KIAKALGTHV 66 >gi|157324992|ref|YP_001468418.1| gp33 [Listeria phage A500] gi|66733000|gb|AAY52819.1| gp33 [Listeria phage A500] Length = 142 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 3/93 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +QE + + LGI+ E G N + ++ + E + Sbjct: 3 GNRLKQLRKNTNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFEVSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 S D + +D ++ + ++ +I Sbjct: 63 KSNNGLVDTIAAH---IDADASEEDIKEILAYI 92 >gi|73663748|ref|YP_302529.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496263|dbj|BAE19584.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 187 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R +SQE L E L ++ Q + +E + L +S + + + Sbjct: 1 MNLGHQIKYYRQRGYLSQESLAEKLYVSRQTISNWENDKSYPDIHNLLMLSSLFDVSLDD 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E Sbjct: 61 LVKGDVEIMERKLKESR 77 >gi|13471336|ref|NP_102905.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022081|dbj|BAB48691.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 180 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ ++ L + V + E+G++ S L+ +E+ PIS FF Sbjct: 6 IRALRRARGLTLAEIALKLDRSVGWVSQVERGLSTPSLSDLRAFAELFGVPISLFFSHDV 65 Query: 79 TVCSD 83 V S+ Sbjct: 66 PVESE 70 >gi|77462735|ref|YP_352239.1| MerR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126461627|ref|YP_001042741.1| hypothetical protein Rsph17029_0858 [Rhodobacter sphaeroides ATCC 17029] gi|221638596|ref|YP_002524858.1| MerR family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332557618|ref|ZP_08411940.1| Transcriptional regulator, MerR family protein [Rhodobacter sphaeroides WS8N] gi|77387153|gb|ABA78338.1| transcriptional regulator, MerR family [Rhodobacter sphaeroides 2.4.1] gi|126103291|gb|ABN75969.1| protein of unknown function DUF955 [Rhodobacter sphaeroides ATCC 17029] gi|221159377|gb|ACM00357.1| Transcriptional regulator, MerR family [Rhodobacter sphaeroides KD131] gi|332275330|gb|EGJ20645.1| Transcriptional regulator, MerR family protein [Rhodobacter sphaeroides WS8N] Length = 461 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 51/130 (39%), Gaps = 12/130 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R+ LG++Q+ E LG + + + E V A+ + +++ ++ Sbjct: 5 LYAGAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDVTK 64 Query: 73 F---------FDVSPTVCSDISSEENNVMDF-ISTPDGLQLNRYFIQIDDV--KVRQKII 120 D+ + + ++ + D + + R F+ + + +++ Sbjct: 65 LTTSEAERIVTDMREALADPVFTDSPPLADLRLVASNAPAFARAFLDLHRAYRQTHERLA 124 Query: 121 ELVRSIVSSE 130 L ++ E Sbjct: 125 SLDEALGRDE 134 >gi|313676267|ref|YP_004054263.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312942965|gb|ADR22155.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 178 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I+ R G+SQ + E +G+ + YEK + + L +I++ I Sbjct: 4 ISNNIKYLRTEKGLSQTAMAEAVGLKRGNIASYEKELAQPSIENLVNIADYFGIDI 59 >gi|313247825|ref|YP_004032987.1| DNA-binding protein [Enterococcus faecalis] gi|312836992|dbj|BAJ34878.1| DNA-binding protein [Enterococcus faecalis] Length = 204 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTID 59 >gi|227518256|ref|ZP_03948305.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227554727|ref|ZP_03984774.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256963254|ref|ZP_05567425.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257088722|ref|ZP_05583083.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|307270406|ref|ZP_07551709.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307287459|ref|ZP_07567511.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|312905012|ref|ZP_07764144.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227074295|gb|EEI12258.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227176142|gb|EEI57114.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256953750|gb|EEU70382.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256997534|gb|EEU84054.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|306501505|gb|EFM70804.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306513253|gb|EFM81882.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310631673|gb|EFQ14956.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 204 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTID 59 >gi|218887444|ref|YP_002436765.1| XRE family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758398|gb|ACL09297.1| transcriptional regulator, XRE family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 188 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R +S+E+L + G+ + + E LQ ++ L + F Sbjct: 6 LGARVRKYREDRSLSREELADAAGLKTEFIAALEDDNLYPSIGPLQKLARALNVRLGTFM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D + + +S + + D Sbjct: 66 DDAVSRDPIVSRQGDREADLTMQK 89 >gi|167854546|ref|ZP_02477327.1| ribonuclease T [Haemophilus parasuis 29755] gi|167854301|gb|EDS25534.1| ribonuclease T [Haemophilus parasuis 29755] Length = 129 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 42/89 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++V ++IR+ R + SQE++ + ++ K E+G ++ +L+ I+++ + Sbjct: 1 MSVNEKIRMVREMNQWSQEEMAAKMNMSTNGYAKIERGETKLNLHKLEQIAQIFNIDVLE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + +E N ++ P+ L Sbjct: 61 LMNCEGKGVFLLMNENGNNTNYCGNPENL 89 >gi|160915619|ref|ZP_02077827.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991] gi|331082745|ref|ZP_08331868.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium 6_1_63FAA] gi|158432095|gb|EDP10384.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991] gi|330400364|gb|EGG80006.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium 6_1_63FAA] Length = 204 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTID 59 >gi|126736502|ref|ZP_01752243.1| putative transcriptional regulator [Roseobacter sp. CCS2] gi|126714040|gb|EBA10910.1| putative transcriptional regulator [Roseobacter sp. CCS2] Length = 143 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + +GKR++ R +G++QE+ L + + + E G VGA ++ ++ + E Sbjct: 32 DPEALQLGKRLKQAREYIGVTQEEAATHLKVRRSAISEMEAGKRGVGALEMKSLASLYER 91 Query: 69 PISFFF-DVSPTVCSDISSEENNVMDF 94 P ++F + V D++ V D Sbjct: 92 PTAWFTGETDTPVPEDVTFLARTVSDL 118 >gi|170725490|ref|YP_001759516.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810837|gb|ACA85421.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 182 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R I G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGASLKAVRKIKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVD 60 Query: 73 FFDVSPTVCSDI 84 FF + T S+ Sbjct: 61 FFSMEDTAASEA 72 >gi|117928830|ref|YP_873381.1| XRE family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649293|gb|ABK53395.1| transcriptional regulator, XRE family [Acidothermus cellulolyticus 11B] Length = 88 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+ R G++Q +L + +T+Q++ E G + R I+E+L + Sbjct: 22 GRRLAQARQAAGLTQAQLADLASVTYQEISHDEAGRRQRPIDRAIQIAEILGWDV 76 >gi|94989544|ref|YP_597644.1| transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94543052|gb|ABF33100.1| Transcriptional regulator [Streptococcus pyogenes MGAS10270] Length = 303 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++++ R+ +S+E L G+ ++ +Q+ + E G + S++ I++ L + + Sbjct: 4 HFGGKVKVLRLEKRISREDLCGDESELSVRQLARIELGQSIPSLSKVIFIAKALNVSVGY 63 Query: 73 FFDVSP 78 D + Sbjct: 64 LTDGAD 69 >gi|30020685|ref|NP_832316.1| transcriptional regulator [Bacillus cereus ATCC 14579] gi|31415823|ref|NP_852563.1| Transcriptional regulator [Bacillus phage phBC6A52] gi|29896237|gb|AAP09517.1| Transcriptional regulator [Bacillus cereus ATCC 14579] Length = 116 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R+ M+QE+ G+ + +T K+E G ++ I++ P+++ + Sbjct: 6 RIKQIRIDNKMNQEQFGKEVDLTKGTGSKFENGKAFPSRETIEKIAKRFNVPVNYLY 62 >gi|329734872|gb|EGG71175.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] Length = 104 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KR++ R GM+ +LG +G T VQ+YE G + + ++ I+ L +F Sbjct: 5 KRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAFLMG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 ++ ++ + Sbjct: 65 WIDESDEQPQHRAAHLEGELTDEE 88 >gi|325144416|gb|EGC66718.1| DNA-binding protein [Neisseria meningitidis M01-240013] Length = 168 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 12/124 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ R L M+Q ++ E G++ + YE+G+++ A +V + + Sbjct: 51 FFGNRLKEERKKLKMTQAEIAEKCGVSGRMWGDYERGISQPKAELFFQFEKV-GIDVQYV 109 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + SE N + + L L R D R+ I+ + R +EKK Sbjct: 110 MHGRRGETAVMPSETLNAEE----QELLVLFREAAAAD----REMILMVAR---RAEKKA 158 Query: 134 RTIE 137 +T Sbjct: 159 QTAL 162 >gi|319399924|gb|EFV88170.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] Length = 189 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 73 FFDVS 77 + Sbjct: 61 LVEDD 65 >gi|311069063|ref|YP_003973986.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] gi|310869580|gb|ADP33055.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] Length = 111 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLKKVSAVLDVSVHTL 61 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 62 LDEKHETEYDGQLDSE 77 >gi|310766294|gb|ADP11244.1| transcriptional regulator [Erwinia sp. Ejp617] Length = 85 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G+SQ+KLG GI ++ +YE+G++ + ++ VL+ P + Sbjct: 5 RLKEARLKKGLSQQKLGVLAGIDEATASARMNQYERGIHVPDFELVCRLAAVLDVPSCYL 64 Query: 74 FDVSPTVC 81 + + + Sbjct: 65 YTLEDELA 72 >gi|301054831|ref|YP_003793042.1| DNA-binding protein [Bacillus anthracis CI] gi|300377000|gb|ADK05904.1| hypothetical DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 67 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R L M+QE L + + + + + EKG I+ L S I F F+ Sbjct: 6 KIKEYRAKLNMTQEDLAKQVSVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 76 VS 77 Sbjct: 66 DE 67 >gi|299536569|ref|ZP_07049881.1| hypothetical protein BFZC1_11132 [Lysinibacillus fusiformis ZC1] gi|298728053|gb|EFI68616.1| hypothetical protein BFZC1_11132 [Lysinibacillus fusiformis ZC1] Length = 68 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 RIR R + ++QE+L + +G++ Q + E G +IS+ Sbjct: 3 NRIRELRKLKKITQEELSKQVGVSRQSIIAIESGKFNPSLELAYNISKAFN 53 >gi|296270462|ref|YP_003653094.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093249|gb|ADG89201.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 474 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 9/113 (7%) Query: 17 KRIR--LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI---- 70 KR+R RR LG++QE L + L + V ++E+ ++ +L+ Sbjct: 7 KRVRFIQRRKALGLTQENLADALHVERSTVARWERAETEPQPWLRPRLAALLKVSAAELE 66 Query: 71 SFFFDVSPTVC-SDISSEENNVMDFISTPD-GLQLNRYFIQIDDVKVRQKIIE 121 S DV+P +D + + DF T + +++ F D+ R++++ Sbjct: 67 SLLADVAPVPGRADRLAHSSAPFDFSLTEEQAVRMLEGFSAY-DIVSRRQVVA 118 >gi|295692649|ref|YP_003601259.1| transcriptional regulator [Lactobacillus crispatus ST1] gi|295030755|emb|CBL50234.1| Transcriptional regulator [Lactobacillus crispatus ST1] Length = 269 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R++LG+SQ + + +T K E+ + + +L I ++ Sbjct: 1 MTIGQQLKKFRLLLGLSQADMAAGI-VTASFYSKVERDQSEIIIDKLVEILNAHNISLNE 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 FF+ + E V + D Sbjct: 60 FFEAFDKENLPNLNLEKKVYSYFDNRD 86 >gi|326204530|ref|ZP_08194387.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985323|gb|EGD46162.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 111 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +G+++E+ E +GI+ V + E+G + I++ L + F Sbjct: 10 IGLRIRSEREKIGLTREQFAEQVGISPLYVGQIERGQRAMSLKTFVKIADSLHANTDFLI 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 S ++++ V++ + +L Sbjct: 70 YGIEERAS--GTDKDGVLNLLEKCSVREL 96 >gi|242243266|ref|ZP_04797711.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis W23144] gi|242233215|gb|EES35527.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis W23144] Length = 189 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 73 FFDVS 77 + Sbjct: 61 LVEDD 65 >gi|228965452|ref|ZP_04126539.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228794283|gb|EEM41800.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 126 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|308535325|ref|YP_002139718.2| helix-turn-helix transcriptional regulator PuuR [Geobacter bemidjiensis Bem] gi|308052670|gb|ACH39922.2| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing protein [Geobacter bemidjiensis Bem] Length = 181 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RM+ ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQE 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|160932466|ref|ZP_02079856.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] gi|156868425|gb|EDO61797.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] Length = 114 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 VG R + R G++QE L E +G++ + E+GVN +L I Sbjct: 10 VGSRFKQYREQSGLTQETLAEKVGLSPNYISAIERGVNFPSLEKLILI 57 >gi|57865959|ref|YP_187612.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|293367592|ref|ZP_06614245.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|57636617|gb|AAW53405.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|291318305|gb|EFE58698.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329736040|gb|EGG72313.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 189 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 73 FFDVS 77 + Sbjct: 61 LVEDD 65 >gi|27469327|ref|NP_765964.1| hypothetical protein SE2409 [Staphylococcus epidermidis ATCC 12228] gi|282874710|ref|ZP_06283589.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|27316877|gb|AAO06052.1|AE016752_85 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|281296426|gb|EFA88941.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|329724169|gb|EGG60687.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] Length = 189 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 73 FFDVS 77 + Sbjct: 61 LVEDD 65 >gi|158317899|ref|YP_001510407.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158113304|gb|ABW15501.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 277 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG IR +R +S +L G++ + + E+G+ R A LQ I++ L Sbjct: 7 RDVGDFIREQRRGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEV 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + E+ ++ + + L Sbjct: 67 LYVQAGILEEREGGED--LLAAVHADETL 93 >gi|325262284|ref|ZP_08129021.1| conserved domain protein [Clostridium sp. D5] gi|324032116|gb|EGB93394.1| conserved domain protein [Clostridium sp. D5] Length = 124 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R LG SQE+L + +G + K E G + S++ S L + S+ D Sbjct: 27 RIKKSRNKLGWSQEELAKKVGYADKTSIAKIEAGKVDLPQSKIVAFSRALSTTTSYLMDG 86 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + D T D L + I+ ++ R+K Sbjct: 87 ESEYQPVTIAAHLDTDDL--TQDELDDVATY--IEFLRNRRK 124 >gi|300856338|ref|YP_003781322.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436453|gb|ADK16220.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 128 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 27/74 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++ E L + L T + +YE + + +++ + + Sbjct: 6 QRMKELRREKNITLENLAKALNTTKSTLSRYENNLRTPNVDFINQLAKYFNVSVDYLLGN 65 Query: 77 SPTVCSDISSEENN 90 S S E+ Sbjct: 66 SDDKTFPDSKEDTP 79 >gi|268608518|ref|ZP_06142245.1| DNA-binding protein [Ruminococcus flavefaciens FD-1] Length = 190 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +I+ R G SQE L E ++ Q V +E + L + + + Sbjct: 1 MEVGNQIKKHRTKNGWSQEVLAEKAFVSRQTVSNWENNKSYPDIHSLVLLGNIFNISLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 V + +N V +F Sbjct: 61 LIKGDVEVMKN-EINKNEVKEF 81 >gi|297590076|ref|ZP_06948716.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|297577204|gb|EFH95918.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] Length = 141 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KR++ R GM+ +LG +G T VQ+YE G + + ++ I+ L ++ Sbjct: 42 KRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAYLMG 101 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 ++ ++ ++ + Sbjct: 102 WVEENDDEVQHRAAHLEGELTDDE 125 >gi|227549953|ref|ZP_03980002.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227077969|gb|EEI15932.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 436 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G RIR R ++Q + + LGI+ + + E + S L +S ++ Sbjct: 7 LYAGGRIRTVRRDNDLTQMDMAQRLGISTSYLNQLENNQRPLTVSVLVELSRAFGLDPAY 66 Query: 73 F 73 F Sbjct: 67 F 67 >gi|270284174|ref|ZP_05965683.2| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] gi|270277253|gb|EFA23107.1| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] Length = 365 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R M+QE+L +G++ Q + K+E G +L I ++ + Sbjct: 26 LRANRHMTQEQLAMLVGVSRQAISKWESGKAYPEMDKLLIICDLFTVSLDDL 77 >gi|255102265|ref|ZP_05331242.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255308125|ref|ZP_05352296.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 70 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+Q +L + +G+ + + E G I++V ++ + F+ Sbjct: 8 KIKEYREKLLMTQNELAKLVGVRRETIVHLENGKYNPSLKLAMDIAKVFDTTVENLFEFI 67 Query: 78 PTV 80 Sbjct: 68 EEE 70 >gi|225019956|ref|ZP_03709148.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum DSM 5476] gi|224947320|gb|EEG28529.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum DSM 5476] Length = 122 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 32/76 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +I+ R + Q+++ E L ++ + YE+ N+ + ++++ + Sbjct: 1 MRFGDKIKNLRTDADLKQKEVAEILKVSRSSISSYEQNKNQPDLHAVIELAKLFNVSTDY 60 Query: 73 FFDVSPTVCSDISSEE 88 +S S + E Sbjct: 61 LLGLSEYKTSWVDETE 76 >gi|239817492|ref|YP_002946402.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239804069|gb|ACS21136.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 120 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN V + +G+ +R R G++Q +L + ++ K E+G L + L+ Sbjct: 19 PNAVTLALGRNLRYFREQAGLTQVELAFDAEVERSRISKIERGHVNPSLLTLATLCYCLK 78 Query: 68 SPISFFFDVSPTVCS 82 + F+ + Sbjct: 79 ITLPTLFEGMKETLA 93 >gi|149011333|ref|ZP_01832580.1| transcriptional regulator [Streptococcus pneumoniae SP19-BS75] gi|168494277|ref|ZP_02718420.1| transcriptional regulator [Streptococcus pneumoniae CDC3059-06] gi|147764323|gb|EDK71254.1| transcriptional regulator [Streptococcus pneumoniae SP19-BS75] gi|183575731|gb|EDT96259.1| transcriptional regulator [Streptococcus pneumoniae CDC3059-06] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|15901276|ref|NP_345880.1| transcriptional repressor, putative [Streptococcus pneumoniae TIGR4] gi|15903322|ref|NP_358872.1| transcriptional repressor, putative [Streptococcus pneumoniae R6] gi|298502624|ref|YP_003724564.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|14972912|gb|AAK75520.1| putative transcriptional repressor [Streptococcus pneumoniae TIGR4] gi|15458920|gb|AAL00083.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|298238219|gb|ADI69350.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] Length = 79 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 16 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 72 >gi|120597109|ref|YP_961683.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|120557202|gb|ABM23129.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1] Length = 188 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F + +P + + + + +T L Sbjct: 64 STFLEPTPQSQGTVFRKPDELRQQPATDGML 94 >gi|319761195|ref|YP_004125132.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317115756|gb|ADU98244.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 109 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFFF 74 G R+R R ++ +++ + +G T + + E K R A R+Q ++ VL + Sbjct: 6 GARLRRLREAKKLTLQQVADEVGCTKAYIWELEMKDGQRPSAERVQALARVLGVTMEDIM 65 Query: 75 DVSPTVCSDISSEE 88 S E+ Sbjct: 66 GEPIEQVPQASPED 79 >gi|295105951|emb|CBL03494.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 71 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR RR G+SQ KL +G + + + E G VG L I++ L+ + F Sbjct: 10 LGAAIRDRREAQGLSQHKLALMVGSSKSHIWRIESGRVSVGLDDLGRIADALDIEVRQLF 69 >gi|257080321|ref|ZP_05574682.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256988351|gb|EEU75653.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] Length = 379 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K++ R+ G++ ++L E ++ Q + YE G A + + VL+ P SFF Sbjct: 10 KQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFPRSFF 66 >gi|229547318|ref|ZP_04436043.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256963086|ref|ZP_05567257.1| transcriptional regulator [Enterococcus faecalis HIP11704] gi|257420304|ref|ZP_05597294.1| zinc-binding transcriptional regulator [Enterococcus faecalis X98] gi|307272606|ref|ZP_07553857.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307274524|ref|ZP_07555705.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|312899748|ref|ZP_07759068.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312953750|ref|ZP_07772582.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|229307557|gb|EEN73544.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256953582|gb|EEU70214.1| transcriptional regulator [Enterococcus faecalis HIP11704] gi|257162128|gb|EEU92088.1| zinc-binding transcriptional regulator [Enterococcus faecalis X98] gi|306508796|gb|EFM77885.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306510708|gb|EFM79727.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|310628336|gb|EFQ11619.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|311293100|gb|EFQ71656.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315152739|gb|EFT96755.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315154567|gb|EFT98583.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315158937|gb|EFU02954.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315167131|gb|EFU11148.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315171237|gb|EFU15254.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|323479183|gb|ADX78622.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 379 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K++ R+ G++ ++L E ++ Q + YE G A + + VL+ P SFF Sbjct: 10 KQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFPRSFF 66 >gi|148253753|ref|YP_001238338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405926|gb|ABQ34432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 482 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 15/112 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ +L E LGI+ V E+ V A L ++E ++ Sbjct: 9 LFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAE------TY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D+ +D + + S P F QI+ K Q++ +L Sbjct: 63 DLDLRDLATADEDRFFAELNEIFSDP-------LFRQIELPK--QELRDLAE 105 >gi|325570037|ref|ZP_08145962.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] gi|325156865|gb|EGC69036.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] Length = 293 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 31/56 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + K+++ R ++Q++L L ++ + + K+E+G L ++++L +P+ Sbjct: 5 LSKKLKDYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPV 60 >gi|317125042|ref|YP_004099154.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Intrasporangium calvum DSM 43043] gi|315589130|gb|ADU48427.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Intrasporangium calvum DSM 43043] Length = 509 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G IR R M+Q +L E LG + V + E G + L I + L+ Sbjct: 9 IGGLIRDARRHKAMTQAELAELLGTSQGAVTRIEAGKQNLSLDMLAKIGDALD 61 >gi|291301709|ref|YP_003512987.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570929|gb|ADD43894.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 397 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 12/102 (11%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPI 70 D GK IR R M+Q L E G++ V+K E+G N L I+ L+ P+ Sbjct: 3 DTTPGKVIRGGRQRRRMTQAALAESAGVSIDLVRKLEQGQRNSARIDSLMAIANALDMPV 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 D+ EN + L L R + I Sbjct: 63 G---DLIGKPRGLTVGAENG--------EVLHLRRAILGITP 93 >gi|255292272|dbj|BAH89394.1| XRE family transcriptional regulator [uncultured bacterium] Length = 172 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R++LG+S ++GE +G+T + K E ++ + L + L +S F Sbjct: 25 IGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNMSELF 84 Query: 75 DVSPTVCSDIS 85 S I+ Sbjct: 85 ATSSDDGLPIT 95 >gi|239631283|ref|ZP_04674314.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525748|gb|EEQ64749.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 112 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+R++ R M+Q +G+ + ++ V YEK ++ ++ F Sbjct: 2 MSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLARYFNVSTDF 61 Query: 73 FFDVS-----PTVCSDISSEENNVMDFIST---PDGLQLNR 105 V+ P S+ + +M F P+ L++ + Sbjct: 62 LLGVTDIRSKPEQIDISDSKNDTIMTFEGRPIPPEDLEIIK 102 >gi|228933066|ref|ZP_04095929.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826667|gb|EEM72438.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|228945385|ref|ZP_04107740.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814357|gb|EEM60623.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|227534195|ref|ZP_03964244.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188165|gb|EEI68232.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 73 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 9/74 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MVG K + R+R R MSQ L E +G+ Q + E Sbjct: 1 MVGGKLM---------NRVRDYRRAQKMSQLALAEKIGVARQTINLIENSKYNPSLDLCL 51 Query: 61 HISEVLESPISFFF 74 ++ L++ ++ F Sbjct: 52 KLAWTLKTDLNTLF 65 >gi|157959968|ref|YP_001500002.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157844968|gb|ABV85467.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 69 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L E L ++ Q + EKG ++ + E PI F+ Sbjct: 3 NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYDPSLPLAFKVARLFEMPIEAIFED 62 Query: 77 SPTVC 81 V Sbjct: 63 ETEVA 67 >gi|108805301|ref|YP_645238.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766544|gb|ABG05426.1| transcriptional regulator, XRE family with cupin sensor [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP D +G IR R+ G++ + I+ + K E G + +++ L Sbjct: 23 NP-DQYLGNFIRKYRLEKGLTLSDISARASISKSMLSKIENGQASPSLHTIARLAQALGV 81 Query: 69 PISFFF 74 +S F Sbjct: 82 TLSTMF 87 >gi|29377715|ref|NP_816869.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29345183|gb|AAO82939.1| zinc-binding transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 379 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K++ R+ G++ ++L E ++ Q + YE G A + + VL+ P SFF Sbjct: 10 KQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFPRSFF 66 >gi|89893376|ref|YP_516863.1| hypothetical protein DSY0630 [Desulfitobacterium hafniense Y51] gi|219666666|ref|YP_002457101.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332824|dbj|BAE82419.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536926|gb|ACL18665.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 73 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RIR R + M+Q ++ E L I YE G + L I+++ + I + Sbjct: 3 ERIRNMREDMDMTQSQIAEHLNIHQTTYSDYEIGKLNIPVQVLGKIADLFGTSIDYL 59 >gi|322420304|ref|YP_004199527.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320126691|gb|ADW14251.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 181 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RM+ ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQE 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|302531776|ref|ZP_07284118.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4] gi|302440671|gb|EFL12487.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4] Length = 505 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 +G R+R R G+SQ+ L + GI+ + + E G + L +E L ++ Sbjct: 114 IGARLRQAREARGISQQALADESGISQSFLSRLESGARLLTGRGLLETFAEALGCSVA 171 >gi|257865636|ref|ZP_05645289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257871972|ref|ZP_05651625.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257799570|gb|EEV28622.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806136|gb|EEV34958.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 204 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 34/82 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R+ LG++Q+++ E L +T Q + +E + L +S++ + + Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLES 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + F Sbjct: 61 LLKPEQAADEPERMSDEKKPTF 82 >gi|229119044|ref|ZP_04248386.1| hypothetical protein bcere0017_53050 [Bacillus cereus Rock1-3] gi|228664435|gb|EEL19934.1| hypothetical protein bcere0017_53050 [Bacillus cereus Rock1-3] Length = 51 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQE L +G+ + + E G I++VLE+PI F Sbjct: 1 MSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLEAPIETLF 47 >gi|220910125|ref|YP_002485436.1| hypothetical protein Cyan7425_4770 [Cyanothece sp. PCC 7425] gi|219866736|gb|ACL47075.1| protein of unknown function DUF955 [Cyanothece sp. PCC 7425] Length = 399 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 4 NKKIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 I + VD+ +G+R++ R GM+Q E + + EKG R+ L + Sbjct: 2 TTNILDHVDLSQLGERLQQARKQCGMTQADAAEIINAARTTLVAIEKGERRLKPGELIKL 61 Query: 63 SEVLESPISFFFDVSP 78 + +S F + P Sbjct: 62 ARAYGRSVSDFLALQP 77 >gi|196033371|ref|ZP_03100783.1| DNA-binding protein [Bacillus cereus W] gi|195993805|gb|EDX57761.1| DNA-binding protein [Bacillus cereus W] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|218902898|ref|YP_002450732.1| DNA-binding protein [Bacillus cereus AH820] gi|228914360|ref|ZP_04077975.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|218536358|gb|ACK88756.1| DNA-binding protein [Bacillus cereus AH820] gi|228845354|gb|EEM90390.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|154504585|ref|ZP_02041323.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260590057|ref|ZP_05855970.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795067|gb|EDN77487.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260539569|gb|EEX20138.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 65 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +N+G+ IR R G+SQ +L E L + + + ++E G + I L Sbjct: 1 MNLGENIRKARKAAGVSQSELAERLQVHQKDISRWENGAHAPTIEMFAKICRELN 55 >gi|91777117|ref|YP_552325.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91689777|gb|ABE32975.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 208 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 31 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 90 Query: 75 DVSPTVCSDISSEENNV 91 T + S + + Sbjct: 91 APQKTPEAIAVSGPHEI 107 >gi|238784124|ref|ZP_04628138.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia bercovieri ATCC 43970] gi|238714970|gb|EEQ06968.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia bercovieri ATCC 43970] Length = 196 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N V ++G R+R R+ ++ ++L + +G + + K E V + L Sbjct: 1 MKKNGDNGGFVLSDLGMRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLH 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNV 91 ++ LE+ IS S S + E + Sbjct: 61 RLASALETNISDLMAESWVADSPVLKPEQRI 91 >gi|289551596|ref|YP_003472500.1| CI-like repressor, phage associated [Staphylococcus lugdunensis HKU09-01] gi|289181127|gb|ADC88372.1| CI-like repressor, phage associated [Staphylococcus lugdunensis HKU09-01] Length = 104 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KR++ R GM+ +LG +G T VQ+YE G + + ++ I+ L +F Sbjct: 5 KRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAFLMG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 ++ ++ + Sbjct: 65 WIEETDEQPQHRAAHLEGELTDEE 88 >gi|257868167|ref|ZP_05647820.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257874560|ref|ZP_05654213.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257802281|gb|EEV31153.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808724|gb|EEV37546.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 77 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q ++ L ++ +YE G + L ++ ++ I + ++ Sbjct: 6 QRIRDLREDNDLTQRQIATLLNVSQSTYSRYENGALDIPIQTLIKLASHYDTSIDYLVNM 65 Query: 77 SPTVCSDISSE 87 + S +SE Sbjct: 66 TDVRTSYKASE 76 >gi|300860062|ref|ZP_07106150.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|300850880|gb|EFK78629.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|315145159|gb|EFT89175.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315163067|gb|EFU07084.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|327534455|gb|AEA93289.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 232 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|258653034|ref|YP_003202190.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556259|gb|ACV79201.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 215 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 15/128 (11%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + ++R R G++ + E +GI+ + K E + L ++ L+ P Sbjct: 29 DLERAIAAQVRSYRQAAGVTLADMAERVGISKAMLSKIENAQTSCSLTTLARLAAGLDIP 88 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 ++ F + F+ G Q+ R + + + EL+ ++ Sbjct: 89 VTALFRGVDVEREAV---------FVPAGHGAQIVRRGSR------QGHLYELLGALRGP 133 Query: 130 EKKYRTIE 137 K+ + Sbjct: 134 HKRMEAVL 141 >gi|229148196|ref|ZP_04276499.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228635208|gb|EEK91735.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] Length = 115 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKQLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTS 59 >gi|225859579|ref|YP_002741089.1| transcriptional regulator [Streptococcus pneumoniae 70585] gi|225721280|gb|ACO17134.1| transcriptional regulator [Streptococcus pneumoniae 70585] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKAID 89 >gi|255655389|ref|ZP_05400798.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|296451377|ref|ZP_06893115.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296880273|ref|ZP_06904238.1| probable phage regulatory protein [Clostridium difficile NAP07] gi|296259793|gb|EFH06650.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296428716|gb|EFH14598.1| probable phage regulatory protein [Clostridium difficile NAP07] Length = 139 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 6/101 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R + Q +L E LG + K+E+ + + L+ ISE+ + + Sbjct: 4 LGERIVYLRKAKNLKQYELEEMLGCDN--LSKFERNIRKPNYEILKSISEIFNVSVDWLL 61 Query: 75 DVSPTVCSDI---SSEENNVMDFISTPDGLQLNRYFIQIDD 112 + S N ++ I++ + ++L F +++D Sbjct: 62 NGDNLSHKSDLICDSSSNYPLNSINSNE-IKLLNNFRKLND 101 >gi|194292356|ref|YP_002008263.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193226260|emb|CAQ72209.1| putative transcriptional regulator, ATP-binding kinase, Helix-turn-helix motif, Shikimate kinase motif [Cupriavidus taiwanensis LMG 19424] Length = 320 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 36/70 (51%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N NP +++G+R+R +R G++++ + G++ + + E G LQH Sbjct: 25 AANGAQKNPFLVSLGERVRQQRACRGLTRKAAAQAAGVSERHLANLEYGSGNASILVLQH 84 Query: 62 ISEVLESPIS 71 ++E L+ ++ Sbjct: 85 VAEALQCSLA 94 >gi|168704437|ref|ZP_02736714.1| hypothetical protein GobsU_33184 [Gemmata obscuriglobus UQM 2246] Length = 239 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR RR L ++ + + G++ + + E G N L I L +S F Sbjct: 174 LGAAIRERRKALSLTLSNMSDRTGVSLGYLSQIELGKNSASIETLYRICLALGMKMSELF 233 >gi|134103762|ref|YP_001109423.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916385|emb|CAM06498.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 194 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 10/102 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + L E GI + + E G + G L ++ + P+ Sbjct: 12 VGPRLRALRRRSGATLTALSETTGIPVSTLSRLESGHRKPGLELLLPLANAYQVPLDELV 71 Query: 75 DVSPTVCSDISSEEN------NVMDFISTPDGLQLNRYFIQI 110 +P V+ P GLQ F QI Sbjct: 72 -GAPASGDPRVHPRPITRNGMTVIPLTRKPGGLQ---AFKQI 109 >gi|254976734|ref|ZP_05273206.1| putative phage transcriptional regulator [Clostridium difficile QCD-66c26] gi|255094118|ref|ZP_05323596.1| putative phage transcriptional regulator [Clostridium difficile CIP 107932] gi|255315869|ref|ZP_05357452.1| putative phage transcriptional regulator [Clostridium difficile QCD-76w55] gi|255518530|ref|ZP_05386206.1| putative phage transcriptional regulator [Clostridium difficile QCD-97b34] gi|255651649|ref|ZP_05398551.1| putative phage transcriptional regulator [Clostridium difficile QCD-37x79] gi|260684686|ref|YP_003215971.1| putative phage transcriptional regulator [Clostridium difficile CD196] gi|260688344|ref|YP_003219478.1| putative phage transcriptional regulator [Clostridium difficile R20291] gi|306521450|ref|ZP_07407797.1| putative phage transcriptional regulator [Clostridium difficile QCD-32g58] gi|260210849|emb|CBA65944.1| putative phage transcriptional regulator [Clostridium difficile CD196] gi|260214361|emb|CBE06742.1| putative phage transcriptional regulator [Clostridium difficile R20291] Length = 66 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 G +++ R+ G+ Q++L + +GI+ + E G N + +S L++ + F Sbjct: 2 GINLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61 >gi|127511903|ref|YP_001093100.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126637198|gb|ABO22841.1| transcriptional regulator, XRE family with cupin sensor [Shewanella loihica PV-4] Length = 182 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R + G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGANLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVD 60 Query: 73 FFDVSPTVCSD 83 FF + ++ ++ Sbjct: 61 FFSIEESMPTE 71 >gi|116326508|ref|YP_794188.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116098007|gb|ABJ63157.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 204 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 35/80 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + K ++ R++ +SQ +L L ++ + + +E N + IS+VL+ + Sbjct: 1 MTFSKSLKELRLLHELSQTQLARKLNVSPKTISNWENERNLPDIELIIKISKVLDVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 + + + + + + V Sbjct: 61 LITGNIQLENKLIKDSHKVF 80 >gi|103487689|ref|YP_617250.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977766|gb|ABF53917.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 73 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 IRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R + G M+Q +LGE +G+T Q + E+G I+ V P+ F Sbjct: 10 IRTLRFLAGEMTQAELGERVGVTRQTIAAIEQGKYSPSLEVAFRIAHVFGKPLEAVF 66 >gi|322832298|ref|YP_004212325.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602] gi|321167499|gb|ADW73198.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602] Length = 185 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R+ R LGMSQ K E G+T + E+ S LQ + V +S FF Sbjct: 9 GRRLSEIRQQLGMSQRKAAELSGLTHSAISTIEQDKVSPAVSTLQKLLRVYGLSLSEFF 67 >gi|300702662|ref|YP_003744262.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299070323|emb|CBJ41615.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 209 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ + +R+R R G + + L G++ + E+G A+ L ++ L + Sbjct: 16 VNERIARRVRELRATRGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLAAGLGVSL 75 Query: 71 SFFFDVS 77 + F Sbjct: 76 ASLFGGE 82 >gi|262174076|ref|ZP_06041752.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451] gi|261890256|gb|EEY36244.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451] Length = 226 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 9/91 (9%) Query: 12 DINVGKRIRLRRMILGM------SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 D V R+R R + + +++G+ +GI YE + + R++ ++ Sbjct: 5 DAIVASRLRELRKQKEIDDGRPWTADQVGKAIGIGQSTYSNYENEIRKPSLDRIEELAAF 64 Query: 66 LESPISF---FFDVSPTVCSDISSEENNVMD 93 + S+ F D + D + D Sbjct: 65 YKVTPSYLAAFTDHKGSGGGDALHVTPMLTD 95 >gi|251781701|ref|YP_002996003.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390330|dbj|BAH80789.1| transcriptional regulator, Cro/CI family [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411061|gb|EFY01969.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126498|gb|ADX23795.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 68 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R +SQ+ L + +G++ Q + EKG + I VL+ + F Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|227357992|ref|ZP_03842334.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906] gi|227161727|gb|EEI46759.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906] Length = 100 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ VG IR R +LG+S + LG+ L ++ Q + + E+G + ++ L+ I Sbjct: 8 INVRVGSFIRRHRTLLGISGKSLGKKLNLSQQHISRLERGQTNFTIEIILYLLNELDKTI 67 Query: 71 SFFFDVSPTVCSDISSE 87 FD+ V + E Sbjct: 68 ---FDLVAEVFYEDPGE 81 >gi|95928831|ref|ZP_01311577.1| transcriptional regulator of molybdate metabolism, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95135176|gb|EAT16829.1| transcriptional regulator of molybdate metabolism, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 372 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVS 77 +R R G SQ++L E +GI Q + E G ++ + + F D + Sbjct: 12 VRDYRQKQGWSQKELAERIGIKRQAIYDIETGRYLPNTGISLRLARLFGCRVEDLFVDDT 71 Query: 78 PTVCSDIS 85 P + Sbjct: 72 PEQQQGVD 79 >gi|29375459|ref|NP_814613.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227554984|ref|ZP_03985031.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229548810|ref|ZP_04437535.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|257421120|ref|ZP_05598110.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|293383752|ref|ZP_06629659.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293388772|ref|ZP_06633265.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294781285|ref|ZP_06746631.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307267950|ref|ZP_07549338.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|312901584|ref|ZP_07760857.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312904434|ref|ZP_07763593.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312907032|ref|ZP_07766028.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312952858|ref|ZP_07771720.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978710|ref|ZP_07790437.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29342919|gb|AAO80683.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227175893|gb|EEI56865.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229306039|gb|EEN72035.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|257162944|gb|EEU92904.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|291078828|gb|EFE16192.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291081929|gb|EFE18892.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294451621|gb|EFG20077.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306515591|gb|EFM84118.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310627017|gb|EFQ10300.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310629374|gb|EFQ12657.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310632132|gb|EFQ15415.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288417|gb|EFQ66973.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311291379|gb|EFQ69935.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315032497|gb|EFT44429.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315034269|gb|EFT46201.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315148032|gb|EFT92048.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315152946|gb|EFT96962.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315155177|gb|EFT99193.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315157505|gb|EFU01522.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315167991|gb|EFU12008.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315574213|gb|EFU86404.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315577343|gb|EFU89534.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315581644|gb|EFU93835.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|323480055|gb|ADX79494.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 232 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|28377773|ref|NP_784665.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270606|emb|CAD63512.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 183 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 I +G +I+ +R SQ+ + E L ++ Q + K+E G + L +S++ Sbjct: 3 IVIGTKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFSVS 59 >gi|30261788|ref|NP_844165.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527021|ref|YP_018370.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184620|ref|YP_027872.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65319065|ref|ZP_00392024.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165869450|ref|ZP_02214109.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633384|ref|ZP_02391709.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638745|ref|ZP_02397020.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686089|ref|ZP_02877311.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170706409|ref|ZP_02896869.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650447|ref|ZP_02933414.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566266|ref|ZP_03019184.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815444|ref|YP_002815453.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604650|ref|YP_002866175.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683285|ref|ZP_05147146.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723868|ref|ZP_05185654.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734638|ref|ZP_05192350.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741048|ref|ZP_05198736.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755290|ref|ZP_05207324.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759827|ref|ZP_05211851.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256016|gb|AAP25651.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502169|gb|AAT30845.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178547|gb|AAT53923.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714890|gb|EDR20408.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513209|gb|EDR88580.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531422|gb|EDR94100.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128507|gb|EDS97374.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669786|gb|EDT20527.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083591|gb|EDT68651.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562401|gb|EDV16368.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006595|gb|ACP16338.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269058|gb|ACQ50695.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|325291275|ref|YP_004267456.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324966676|gb|ADY57455.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 66 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KR+++ RM M QE L + +G+T Q + E G + I + L + F Sbjct: 4 KRMKIARMECDMKQEDLAKAVGVTRQTIGMIESGNYNPTLNLCIAICKALGKTLDGLF 61 >gi|310644825|ref|YP_003949584.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309249776|gb|ADO59343.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 114 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 36/84 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR R G++Q+KL + + ++ + E+G L+ + L IS Sbjct: 6 KQIGTRIRAIRNAKGLTQQKLADIASLDYRYIGALERGERNFSIDTLEKVLTALNVSISE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + +D + + +F++ Sbjct: 66 LMFSEEHMTTDEMIRQEAIDEFVA 89 >gi|303254672|ref|ZP_07340774.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|303258758|ref|ZP_07344738.1| transcriptional regulator [Streptococcus pneumoniae SP-BS293] gi|303261922|ref|ZP_07347868.1| transcriptional regulator [Streptococcus pneumoniae SP14-BS292] gi|303263784|ref|ZP_07349706.1| transcriptional regulator [Streptococcus pneumoniae BS397] gi|303265681|ref|ZP_07351580.1| transcriptional regulator [Streptococcus pneumoniae BS457] gi|303268616|ref|ZP_07354408.1| transcriptional regulator [Streptococcus pneumoniae BS458] gi|301802510|emb|CBW35269.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302598384|gb|EFL65428.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|302637005|gb|EFL67494.1| transcriptional regulator [Streptococcus pneumoniae SP14-BS292] gi|302640259|gb|EFL70714.1| transcriptional regulator [Streptococcus pneumoniae SP-BS293] gi|302641895|gb|EFL72250.1| transcriptional regulator [Streptococcus pneumoniae BS458] gi|302644808|gb|EFL75056.1| transcriptional regulator [Streptococcus pneumoniae BS457] gi|302646822|gb|EFL77047.1| transcriptional regulator [Streptococcus pneumoniae BS397] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|300871532|ref|YP_003786405.1| MerR family transcriptional regulator [Brachyspira pilosicoli 95/1000] gi|300689233|gb|ADK31904.1| transcriptional regulator, MerR family [Brachyspira pilosicoli 95/1000] Length = 121 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N+G IRL R M+ + L E G++ + +Q E G + RL I+ LE+ Sbjct: 9 NLGYNIRLLRKSKKMTIDALAEHAGVSSKYLQGIEVGNRNISVKRLNKIARALET 63 >gi|295106118|emb|CBL03661.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 83 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ L +G++ Q + E G+ A + L+ F Sbjct: 23 NRLKAARAEQGLSQTDLARLVGVSRQTISAIETGLFNPTAKLALVLCIALDKKFEDLF 80 >gi|288959830|ref|YP_003450170.1| transcriptional regulator [Azospirillum sp. B510] gi|288912138|dbj|BAI73626.1| transcriptional regulator [Azospirillum sp. B510] Length = 210 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+ +R R G+S E+L G++ + + E G + + L I+ L+ ++ Sbjct: 30 LGRHLRRLRTRQGLSLERLARLSGVSRAMLGQIELGRSAPTITVLWKIARALDVTLA 86 >gi|255103257|ref|ZP_05332234.1| hypothetical protein CdifQCD-6_20765 [Clostridium difficile QCD-63q42] Length = 112 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 7/117 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R LG++Q ++G L ++ + E G + + I + ++ Sbjct: 3 KRLKTLRKELGLNQTQMGNKLFLSQDHISSLETGRRDLTDRIINDICKEFNVNENWL--- 59 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T DI + MDF D ++ R ++ + ++++ + + E K Sbjct: 60 -RTGEGDIFQDPTLDMDF--DDDIKEMLRMISKL-SPEAQKRLYNVAEVFLEEENKK 112 >gi|222152254|ref|YP_002561429.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113065|emb|CAR40420.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 311 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +++ R M++E L G+ ++ +Q+ + E G + ++ I++ L P+S F Sbjct: 4 LGLKMKELRKKKQMTREALCGDESELSVRQLARIESGQSNPSLAKALFIAKKLGVPLSDF 63 >gi|254388135|ref|ZP_05003371.1| hypothetical protein SSCG_00698 [Streptomyces clavuligerus ATCC 27064] gi|294817387|ref|ZP_06776029.1| Putative Xre family DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197701858|gb|EDY47670.1| hypothetical protein SSCG_00698 [Streptomyces clavuligerus ATCC 27064] gi|294322202|gb|EFG04337.1| Putative Xre family DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 349 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ P P I G ++R R+I MSQ L L I V ++E G+ RL Sbjct: 12 AHSRSNPMPDRIFDGNKLRDYRVIRRMSQSDLAAALDIRTNAVYRWENGLATPPQERLPG 71 Query: 62 ISEVLESPISFFF 74 I+ +L + + F Sbjct: 72 IAAMLGADLDELF 84 >gi|295835325|ref|ZP_06822258.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] gi|197696396|gb|EDY43329.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] Length = 187 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 8/108 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R GM+ L GI+ + + E G+ R L ++ + Sbjct: 4 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 63 Query: 75 DVSPTVCSDISSE-----ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P + +E + + P G + + I + R+ Sbjct: 64 GTRPVADPRVRAEPIVRHQRRMYPLSRHPGG---VQAYRMIIEGGSRE 108 >gi|196038875|ref|ZP_03106182.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|228926817|ref|ZP_04089885.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|301053321|ref|YP_003791532.1| transcriptional regulator [Bacillus anthracis CI] gi|196030020|gb|EDX68620.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|228832930|gb|EEM78499.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300375490|gb|ADK04394.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|148997860|ref|ZP_01825424.1| transcriptional regulator [Streptococcus pneumoniae SP11-BS70] gi|168575004|ref|ZP_02720967.1| transcriptional regulator [Streptococcus pneumoniae MLV-016] gi|221232553|ref|YP_002511707.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225855248|ref|YP_002736760.1| transcriptional regulator [Streptococcus pneumoniae JJA] gi|307068427|ref|YP_003877393.1| putative Zn peptidase [Streptococcus pneumoniae AP200] gi|147756359|gb|EDK63401.1| transcriptional regulator [Streptococcus pneumoniae SP11-BS70] gi|183578938|gb|EDT99466.1| transcriptional regulator [Streptococcus pneumoniae MLV-016] gi|220675015|emb|CAR69593.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225724225|gb|ACO20078.1| transcriptional regulator [Streptococcus pneumoniae JJA] gi|306409964|gb|ADM85391.1| Predicted Zn peptidase [Streptococcus pneumoniae AP200] gi|332199828|gb|EGJ13903.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|29828402|ref|NP_823036.1| DNA-binding protein [Streptomyces avermitilis MA-4680] gi|29605505|dbj|BAC69571.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680] Length = 285 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K P D VG +R R +SQ +L G + + + E G +R + ++ Sbjct: 16 TEKGTGPTDRGVGPLLRGWRERRRVSQLELALRAGSSARHISFVETGRSRPSEEMVLRLA 75 Query: 64 EVLESPI 70 E LE P+ Sbjct: 76 EHLEIPV 82 >gi|52143677|ref|YP_083152.1| transcriptional regulator [Bacillus cereus E33L] gi|51977146|gb|AAU18696.1| transcriptional regulator [Bacillus cereus E33L] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|85715936|ref|ZP_01046913.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697134|gb|EAQ35015.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 77 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ + R+ G++QE+ + G + Q + E+G L +++ LE Sbjct: 5 RLVGQNVMRIRLEKGLTQEQFSDISGFSQQYLSGLERGKRNPTIVTLYELAKALEVS 61 >gi|315174882|gb|EFU18899.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 232 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|315027060|gb|EFT38992.1| helix-turn-helix protein [Enterococcus faecalis TX2137] Length = 232 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|296156274|ref|ZP_06839113.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893780|gb|EFG73559.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 91 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G +R R G SQE+L E G+ V + E+G + ++ + PI Sbjct: 6 REFGAAVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEH 65 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 S +D S Sbjct: 66 LLTPSSNASGIAVLAHAAFVDPPS 89 >gi|284991527|ref|YP_003410081.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064772|gb|ADB75710.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 503 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G +R R G++Q++L E LG + V + E+G + L +SE LE Sbjct: 4 IGMLVRDARRHRGLTQQQLAERLGTSQSAVARIEQGGQNLTLELLGRLSEALE 56 >gi|224824162|ref|ZP_03697270.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603581|gb|EEG09756.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 180 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 47/109 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R+ R G+SQ +L + G+T + E+ S L+ + E L +S Sbjct: 1 MDIGARLRMVRARFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPMTLSD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 FF + + + + + L L + D+++ ++ E Sbjct: 61 FFTFDAEPEHKVFYNADELPNLGNEKVQLFLVGASHERRDLQILREFYE 109 >gi|222102390|ref|YP_002546531.1| hypothetical protein Avi_9872 [Agrobacterium vitis S4] gi|221739634|gb|ACM40336.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 158 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SP 69 +D + IR R +S+ K+ LG++ +YE V+R+ SRL H+ EVL+ +P Sbjct: 42 LDDKISTSIREARDKRSLSRSKIAPLLGLSNAVYHRYETSVSRLTVSRLIHLCEVLDATP 101 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +P + + + + IS + QL D + ++I +LV S+ Sbjct: 102 EEILAPAAPHLWGENQEHSRLLQNTIS--EIRQL--------DTEGLERIFKLVVSM 148 >gi|223939954|ref|ZP_03631821.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223891368|gb|EEF57862.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 203 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 VG + + + +R++ R G S + L G++ + + E+ + Sbjct: 13 VGTTRPADSTSNHFCRRLKQLRAERGWSLDSLANASGVSRSMISQVERNQANPTLAVAFR 72 Query: 62 ISEVLESPISFFFDVSPTVCS 82 I+ ++ + + S Sbjct: 73 IARAFGMSLAELVETPEAMSS 93 >gi|148989598|ref|ZP_01820930.1| transcriptional regulator [Streptococcus pneumoniae SP6-BS73] gi|147924915|gb|EDK75997.1| transcriptional regulator [Streptococcus pneumoniae SP6-BS73] gi|301794784|emb|CBW37238.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|332201226|gb|EGJ15297.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|148984258|ref|ZP_01817553.1| transcriptional regulator [Streptococcus pneumoniae SP3-BS71] gi|147923547|gb|EDK74660.1| transcriptional regulator [Streptococcus pneumoniae SP3-BS71] gi|301800603|emb|CBW33244.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|219667096|ref|YP_002457531.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537356|gb|ACL19095.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 179 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R +S + + E +T + + E+ + L+ I+ L PIS FF Sbjct: 4 LGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISSFF 63 Query: 75 DVSPTVCSDISSEENNVMDF 94 + I +E + Sbjct: 64 VNPQFTSTHIPAEAQRTIQI 83 >gi|94991134|ref|YP_599234.1| transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94544642|gb|ABF34690.1| Transcriptional regulator [Streptococcus pyogenes MGAS10270] Length = 195 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+++ R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLD 59 >gi|20808514|ref|NP_623685.1| helix-turn-helix [Thermoanaerobacter tengcongensis MB4] gi|20517136|gb|AAM25289.1| Helix-turn-helix [Thermoanaerobacter tengcongensis MB4] Length = 77 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKY-EKGVNRVGASRLQHISEVLESPIS-FFF 74 +++++ R G++QE++ + LG + Y E G + + IS++L ++ FF Sbjct: 4 EKLKILRKARGLTQEQMAKALGYKDRSGYWYLENGRVSITIDKAMEISKILGVNVNEIFF 63 Query: 75 DVSPTVCS 82 + + S Sbjct: 64 ENNIEQNS 71 >gi|332292914|ref|YP_004431523.1| transcriptional regulator, XRE family [Krokinobacter diaphorus 4H-3-7-5] gi|332171000|gb|AEE20255.1| transcriptional regulator, XRE family [Krokinobacter diaphorus 4H-3-7-5] Length = 66 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R IL ++Q+ L + +G++ Q + EK +SE+ E P++ FF +S Sbjct: 5 LKVERAILNLTQDDLAKKIGVSRQTINSIEKNRYVPSTVLALKLSELFEKPVNEFFSLSE 64 >gi|304385876|ref|ZP_07368220.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328380|gb|EFL95602.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 196 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 7 IPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P VD +++G ++ R ++Q ++ L +T Q + ++E+G L+ ++E+ Sbjct: 2 KPEGVDQMSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAEL 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVM 92 I +++ T + EE + M Sbjct: 62 YGVSID---ELTNTSLLNPVQEEGDPM 85 >gi|257868500|ref|ZP_05648153.1| DNA binding protein [Enterococcus gallinarum EG2] gi|257802664|gb|EEV31486.1| DNA binding protein [Enterococcus gallinarum EG2] Length = 70 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G+SQ +L +G++ Q + E I+ + + F + Sbjct: 5 NRLRSIREEQGLSQGELAAIMGVSRQTINAIETHKYNPSLELALRIAHYFKLSVEELFKL 64 Query: 77 SPTVCS 82 + Sbjct: 65 TGGTNE 70 >gi|238761698|ref|ZP_04622673.1| Transcriptional regulator, XRE family [Yersinia kristensenii ATCC 33638] gi|238700212|gb|EEP92954.1| Transcriptional regulator, XRE family [Yersinia kristensenii ATCC 33638] Length = 196 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 3/106 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N V ++G R+R R+ ++ ++L +G + + K E V + L Sbjct: 1 MKKNGDNSGFVLSDLGMRLRHARLAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLH 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD-FIS--TPDGLQL 103 ++ LE+ IS S S + E + F+ G+ L Sbjct: 61 RLASALETNISDLMAESWVADSPVLKPEQRIRKRFVHRNKKGGIAL 106 >gi|229030998|ref|ZP_04187014.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] gi|228730345|gb|EEL81309.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] Length = 374 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 10 IADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISID 62 >gi|225019904|ref|ZP_03709096.1| hypothetical protein CLOSTMETH_03858 [Clostridium methylpentosum DSM 5476] gi|224947268|gb|EEG28477.1| hypothetical protein CLOSTMETH_03858 [Clostridium methylpentosum DSM 5476] Length = 149 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R +Q+ L LG++ + K+E+G+ S ++ ++ L I+ F Sbjct: 10 GSLIATVRKEQNRTQQDLANELGVSSAAISKWERGIGFPDVSLIEPLAISLGITIAELFK 69 Query: 76 VS 77 Sbjct: 70 GE 71 >gi|242309806|ref|ZP_04808961.1| predicted protein [Helicobacter pullorum MIT 98-5489] gi|239523807|gb|EEQ63673.1| predicted protein [Helicobacter pullorum MIT 98-5489] Length = 186 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 6 KIPNPVD----INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K+ +D + +G RIR R LG++QE+ + I + + YE G R+ + + Sbjct: 38 KMKGDIDYEEMLKIGSRIREAREFLGLTQEEFAKNFHIDTRLLSFYETGERRIPVTFIIK 97 Query: 62 ISEVLES-PISFFFDVSPTVCSDIS 85 + E L+ PI F V ++ +I Sbjct: 98 MYECLKVNPIFVLFGVGSSIIKEID 122 >gi|219852085|ref|YP_002466517.1| XRE family transcriptional regulator [Methanosphaerula palustris E1-9c] gi|219546344|gb|ACL16794.1| transcriptional regulator, XRE family [Methanosphaerula palustris E1-9c] Length = 69 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R + ++QE LG +G+ Q + EKG I+ I F Sbjct: 3 NRIKVFRAMNDLTQENLGRAIGVNRQTILAIEKGQYVPSLDLAFRIARYFSVNIEEMF 60 >gi|199597287|ref|ZP_03210718.1| Predicted transcriptional regulator [Lactobacillus rhamnosus HN001] gi|229551796|ref|ZP_04440521.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258507943|ref|YP_003170694.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|258539196|ref|YP_003173695.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|199591803|gb|EDY99878.1| Predicted transcriptional regulator [Lactobacillus rhamnosus HN001] gi|229314850|gb|EEN80823.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257147870|emb|CAR86843.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|257150872|emb|CAR89844.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|259649270|dbj|BAI41432.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 62 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +IR R ++Q++L + + +T Q + E S ++ L++ + F Sbjct: 3 NKIRTLRTQQHLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALARQLQTTVDHLF 60 >gi|49477327|ref|YP_035899.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118477214|ref|YP_894365.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|229183977|ref|ZP_04311192.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|49328883|gb|AAT59529.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416439|gb|ABK84858.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|228599502|gb|EEK57107.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|15903671|ref|NP_359221.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|116516126|ref|YP_817046.1| transcriptional regulator [Streptococcus pneumoniae D39] gi|15459299|gb|AAL00432.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076702|gb|ABJ54422.1| transcriptional regulator [Streptococcus pneumoniae D39] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|238784700|ref|ZP_04628704.1| hypothetical protein yberc0001_18610 [Yersinia bercovieri ATCC 43970] gi|238714379|gb|EEQ06387.1| hypothetical protein yberc0001_18610 [Yersinia bercovieri ATCC 43970] Length = 160 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 6/103 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R SQE+L E + + +Q+ E G L I+ VLE +S + Sbjct: 5 RIRELRQARAWSQEQLAELCSLNVRTIQRVESGEQ-ASLETLSAIAAVLELKVSELY-TP 62 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + D + F++ ++ + +I Sbjct: 63 GASQQQAAPADAVDQRVLDARDAVDNEMAFLR----QLLRAVI 101 >gi|116691614|ref|YP_837147.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736384|ref|YP_001777644.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206562401|ref|YP_002233164.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|116649614|gb|ABK10254.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] gi|169818572|gb|ACA93154.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] gi|198038441|emb|CAR54399.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 73 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G +R R SQE+L E G+ V + E+G I+ + IS Sbjct: 7 HFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSIS 64 >gi|319939541|ref|ZP_08013901.1| prophage [Streptococcus anginosus 1_2_62CV] gi|319811527|gb|EFW07822.1| prophage [Streptococcus anginosus 1_2_62CV] Length = 159 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+++ L + + Q++E G +++ + Q +++ E I + Sbjct: 2 NRLKELRQDKKLSQKEIALELQVPLRTYQRWENGESQIKQEKAQQLADYFEVSIGYL 58 >gi|314935191|ref|ZP_07842544.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] gi|313656526|gb|EFS20265.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] Length = 191 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R SQE L E L ++ Q + +E + L + E+ + + Sbjct: 1 MNIGQQIRKYRERDEYSQEYLAEKLYVSRQTISNWENEKSYPDIHNLLVMCELFDISLDD 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|313669507|ref|YP_004049933.1| hypothetical protein Sulku_2730 [Sulfuricurvum kujiense DSM 16994] gi|313156704|gb|ADR35380.1| hypothetical protein Sulku_2730 [Sulfuricurvum kujiense DSM 16994] Length = 90 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 9 NPVD---INVGKRIRLRRMILGMSQEKLGECLG---ITFQQVQKYEKGVNRVGASRLQHI 62 + +D I +G+ ++ RM G+SQ KL + +G ++ + + L I Sbjct: 11 DYIDKIYIEIGENVKKIRMEKGISQLKLAQAIGHKSLSIVSLAEIYHNKQHFNIEHLVKI 70 Query: 63 SEVLESPISFFF 74 + VL+ I FF Sbjct: 71 AYVLDVNICNFF 82 >gi|306826725|ref|ZP_07460027.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782] gi|304431014|gb|EFM34021.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782] Length = 195 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+++ R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLD 59 >gi|298372553|ref|ZP_06982543.1| transcriptional regulator, Cro/CI family [Bacteroidetes oral taxon 274 str. F0058] gi|298275457|gb|EFI17008.1| transcriptional regulator, Cro/CI family [Bacteroidetes oral taxon 274 str. F0058] Length = 117 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+ + I+ R G+SQE + L I+ K E G + RLQ I +LE +S Sbjct: 1 MNIIENIKKMRKHKGISQEYIASHLNISQSAYHKIEVGETELTTDRLQQILNILEIDLS 59 >gi|295107832|emb|CBL21785.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 178 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ GM+Q+ LG +G + ++ +YE G + A +++ L+ Sbjct: 1 MAIGERIHFFRILRGMTQKYLGTIVGFPERSADVRLAQYETGTRKPKAELTAALAQALDV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|229553254|ref|ZP_04441979.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540134|ref|YP_003174633.1| transcription regulator [Lactobacillus rhamnosus Lc 705] gi|229313340|gb|EEN79313.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257151810|emb|CAR90782.1| Transcription regulator [Lactobacillus rhamnosus Lc 705] Length = 67 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ L E +G+ Q + E G +S L + ++ F Sbjct: 2 NRVREFRREKKLSQLALAEKIGVARQTINLIENGKYNPSLELCLKLSWTLGTDLNTLF 59 >gi|229121334|ref|ZP_04250565.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|228662179|gb|EEL17788.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEIVEL 72 >gi|228474153|ref|ZP_04058890.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|228271848|gb|EEK13185.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] Length = 191 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R SQE L E L ++ Q + +E + L + E+ + + Sbjct: 1 MNIGQQIRKYRERDEYSQEYLAEKLYVSRQTISNWENEKSYPDIHNLLVMCELFDISLDD 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|186704310|dbj|BAG30963.1| unnamed protein product [Comamonas testosteroni] Length = 495 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 14/125 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G++Q L + L ++ + + E+ + + L I VL I F Sbjct: 5 FMGVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ---KIIELVRSIVSSE 130 S + + ++ + + + P+G + ++R+ K+ +L + +++ Sbjct: 65 ---SEDEEARLLAQLRDAVAAMPQPEG--------AVPLPELREVAAKLPQLAQMLLAMH 113 Query: 131 KKYRT 135 +++ Sbjct: 114 QRHLA 118 >gi|114569063|ref|YP_755743.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339525|gb|ABI64805.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 72 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 19 IRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 IR R G M+Q L +G+T Q + E+G I+ V + + F Sbjct: 11 IRTLRFHAGEMTQADLARQVGVTRQTIIAIEQGKYSPSLEVAFKIARVFKVGLDAVFQYP 70 Query: 78 PT 79 P Sbjct: 71 PE 72 >gi|330816861|ref|YP_004360566.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] gi|327369254|gb|AEA60610.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] Length = 207 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G R+R R GM+ E+L E G++ + K E+G I++ L + ++ Sbjct: 29 GARVRKLRAAAGMTLEQLSERSGVSRAMLSKVERGEKSPTIGIATRIAQSLRTSLT 84 >gi|323126263|gb|ADX23560.1| DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 124 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V ++++ R+ +SQ+ L E L I+ Q + K+E G L ++E+ + + Sbjct: 4 VAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTIPDLDNLVRLTEIFDVSLDELV 63 Query: 75 DVSPTVCSDISSEENNVMDF 94 P EN +D Sbjct: 64 LAKPHEVKVERIYENKPLDL 83 >gi|317470497|ref|ZP_07929885.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp. 3_2_56FAA] gi|316902012|gb|EFV23938.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp. 3_2_56FAA] Length = 149 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R +SQE + LG++ Q + K+E G + ++++ + + Sbjct: 1 MNLGNSLFNARKKSNLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + + EN Sbjct: 61 LIEFDIELKEIEQAIEN 77 >gi|308175926|ref|YP_003915332.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743389|emb|CBT74361.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 65 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G SQ+ L + LG++ Q + EKG +S V I F Sbjct: 3 NNLSEYRKEHGFSQQALADLLGVSRQTIISLEKGRYDPSLPLAFKLSAVFGCKIEDLF 60 >gi|295104999|emb|CBL02543.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 100 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R +Q+ L + LG+T V +E+G N + L I ++ + + Sbjct: 2 LGERLAEIRKNYHDTQKSLADKLGLTVWAVSAWEQGRNSPPSDVLLAICKLYGTSADYLL 61 Query: 75 DVSPTVCSDISSEEN 89 ++ SD + ++ Sbjct: 62 GLTDIDPSDEARKQR 76 >gi|229605809|ref|YP_002876513.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae MJ-1236] gi|229372295|gb|ACQ62717.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae MJ-1236] Length = 114 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R+ ++QE++ +G+ YEKG ++ +++ PI+ Sbjct: 7 SKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAELVSD 66 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 S T + + +++ + P+ Sbjct: 67 SETNIDEKLKSKIRMIESLDEPE 89 >gi|229550955|ref|ZP_04439680.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229315670|gb|EEN81643.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 290 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 K+++ R+ M+Q L + L ++ V +E N + I+ + + Sbjct: 93 KQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLD 147 >gi|258651682|ref|YP_003200838.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554907|gb|ACV77849.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 117 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%) Query: 10 PVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D+ G ++ +R + +SQ +L + G++ + + E+G + A L+ I+ L Sbjct: 4 PIDMAEAFGAFVKAQRQLANISQRQLAKASGMSDSYLSQIERGQYKPSAEVLRGIAGALH 63 Query: 68 SPISFFF------DVSPTVCSDISSEENNVMD 93 P + F D + +S EE +D Sbjct: 64 IPPAVLFAQFGLLDTNDEQAPRVSVEEAIRLD 95 >gi|210632226|ref|ZP_03297243.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] gi|210159684|gb|EEA90655.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] Length = 222 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + I+ R GM+Q +L E L + + ++E G + +Q ++ V Sbjct: 13 ISQNIKRLRKQAGMTQVELAEKLDVARSTITQWETGWSSPRMGMVQKLAGVFGV 66 >gi|205374685|ref|ZP_03227479.1| putative phage repressor [Bacillus coahuilensis m4-4] Length = 115 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+ ++++R + G+SQE+L + + ++KYE G + +S VL+ P S Sbjct: 3 YFGEHLKMQRELHGLSQEELAFKARLGKRTIEKYENGEQIPDTQTILKLSTVLDIPASEL 62 Query: 74 FDVSPTVCSDISSEENNVMD 93 + I SE ++ Sbjct: 63 MEREIHQTGGIDSEIEQLVQ 82 >gi|168213146|ref|ZP_02638771.1| immunity repressor protein [Clostridium perfringens CPE str. F4969] gi|170715320|gb|EDT27502.1| immunity repressor protein [Clostridium perfringens CPE str. F4969] Length = 117 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R G++ ++L + LG T + +YE G+ + + + V Sbjct: 6 KRLKQLRNEKGLTLDELKDALGTTKATLSRYENGLREPKIDFANKAANYFNVSLDYILGV 65 Query: 77 SP-TVCSDISSEENNVMDFISTPD 99 S +++S+ E+ ++ + Sbjct: 66 SDVREVNELSTNESLAQKLLAELE 89 >gi|167626085|ref|YP_001676379.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167356107|gb|ABZ78720.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 69 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L E L ++ Q + EKG ++ + E PI F+ Sbjct: 3 NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYDPSLPLAFKVARLFEMPIEAIFED 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|329891038|ref|ZP_08269381.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846339|gb|EGF95903.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 72 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 17 KRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R G M+Q L +G+T Q + E+G I++V I F Sbjct: 10 NRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAQVFGVEIGEVF 68 >gi|313903103|ref|ZP_07836497.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] gi|313466605|gb|EFR62125.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] Length = 218 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R +S ++ G+ F + KYE+ + L+ ++ + E P+S F Sbjct: 4 LGGRLRRIRESRNLSIYEVERRTGMHFSTISKYERNERQPSLDVLRELAALYEVPVSVF 62 >gi|310779002|ref|YP_003967335.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309748325|gb|ADO82987.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 179 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 37/81 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R ++QE+L + ++ + + E+ + + L I E L + + Sbjct: 1 MIIGEKIKRLRQGKLLTQEELADRCELSKGFISQLERDLTSPSIATLVDILESLGTNLKE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF+ S+++ + Sbjct: 61 FFNEEEDEKIVFSNDDFFEFE 81 >gi|307128006|ref|YP_003880037.1| transcriptional regulator [Streptococcus pneumoniae 670-6B] gi|306485068|gb|ADM91937.1| transcriptional regulator [Streptococcus pneumoniae 670-6B] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|326773541|ref|ZP_08232824.1| transcriptional regulator, HTH_3 family [Actinomyces viscosus C505] gi|326636771|gb|EGE37674.1| transcriptional regulator, HTH_3 family [Actinomyces viscosus C505] Length = 76 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V RI + R +S+ +L E LG+ +Q V E+G I+ + P+ Sbjct: 5 DDVVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFDVPVE 64 Query: 72 FFFDVSP 78 F + Sbjct: 65 SVFSLEE 71 >gi|257889196|ref|ZP_05668849.1| predicted protein [Enterococcus faecium 1,141,733] gi|257825268|gb|EEV52182.1| predicted protein [Enterococcus faecium 1,141,733] Length = 58 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R+ G + ++ + + FQ + KYE + + S L+ +S + + PI+ FF Sbjct: 3 LKAARVNAGFTSKEAAKAADVHFQTLSKYEIDSSDIPFSLLKELSNLYQVPINNFF 58 >gi|229072719|ref|ZP_04205921.1| Transcription regulator, probable-related protein [Bacillus cereus F65185] gi|229193504|ref|ZP_04320451.1| Transcription regulator, probable-related protein [Bacillus cereus ATCC 10876] gi|228590036|gb|EEK47908.1| Transcription regulator, probable-related protein [Bacillus cereus ATCC 10876] gi|228710695|gb|EEL62668.1| Transcription regulator, probable-related protein [Bacillus cereus F65185] Length = 68 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 7 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 64 >gi|227824109|ref|YP_002828082.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] gi|227343111|gb|ACP27329.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] Length = 197 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 35/76 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+R+R R + ++ ++L G++ + + E+G A L + L + Sbjct: 12 SLEQTIGERVREMRTVQALTLDELAIRSGVSRAMISRIERGEASPTAQLLAKLCSALGTT 71 Query: 70 ISFFFDVSPTVCSDIS 85 +S F + S ++ Sbjct: 72 LSALFASAAENASPVA 87 >gi|225861611|ref|YP_002743120.1| transcriptional regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298230403|ref|ZP_06964084.1| transcriptional regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255524|ref|ZP_06979110.1| transcriptional regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503538|ref|YP_003725478.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|225727248|gb|ACO23099.1| transcriptional regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298239133|gb|ADI70264.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|327389977|gb|EGE88322.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|222084616|ref|YP_002543145.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221722064|gb|ACM25220.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 265 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +G ++R R G SQ L GI+ +Q+ E G + G L H++EVL Sbjct: 1 MPNE----LGPQLRAWRGTRGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLAEVL 56 Query: 67 ESPI 70 + P+ Sbjct: 57 DVPL 60 >gi|149185489|ref|ZP_01863805.1| DNA-binding protein, putative [Erythrobacter sp. SD-21] gi|148830709|gb|EDL49144.1| DNA-binding protein, putative [Erythrobacter sp. SD-21] Length = 242 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 11/105 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R G + L E +G++ + K+E R +Q +++ L+ Sbjct: 129 LGTRIKRLRTTRGFTMCGLAESVGVSKPTLWKWEGDQVRPRHETMQRLAKQLDVSELELV 188 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +P + ++ E + S L R R++I Sbjct: 189 YGAPGLGKAVALAEGGLDSGASLA---DLIRA--------SRRRI 222 >gi|15901638|ref|NP_346242.1| transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|111657394|ref|ZP_01408149.1| hypothetical protein SpneT_02001403 [Streptococcus pneumoniae TIGR4] gi|148993267|ref|ZP_01822807.1| transcriptional regulator [Streptococcus pneumoniae SP9-BS68] gi|149006536|ref|ZP_01830235.1| transcriptional regulator [Streptococcus pneumoniae SP18-BS74] gi|168488478|ref|ZP_02712677.1| transcriptional regulator [Streptococcus pneumoniae SP195] gi|168491876|ref|ZP_02716019.1| transcriptional regulator [Streptococcus pneumoniae CDC0288-04] gi|225857406|ref|YP_002738917.1| transcriptional regulator [Streptococcus pneumoniae P1031] gi|14973308|gb|AAK75882.1| transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|147761834|gb|EDK68797.1| transcriptional regulator [Streptococcus pneumoniae SP18-BS74] gi|147928034|gb|EDK79053.1| transcriptional regulator [Streptococcus pneumoniae SP9-BS68] gi|183572846|gb|EDT93374.1| transcriptional regulator [Streptococcus pneumoniae SP195] gi|183573895|gb|EDT94423.1| transcriptional regulator [Streptococcus pneumoniae CDC0288-04] gi|225725090|gb|ACO20942.1| transcriptional regulator [Streptococcus pneumoniae P1031] gi|332072635|gb|EGI83118.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332072966|gb|EGI83447.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 383 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|153950714|ref|YP_001399331.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|152962209|gb|ABS49670.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] Length = 135 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +Q+++ +G+ Q KYE G++ A +L ++E+L + I + Sbjct: 19 GLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYLLL 78 Query: 76 VSPTVCSDI 84 S S I Sbjct: 79 GSSNETSSI 87 >gi|332529565|ref|ZP_08405521.1| helix-turn-helix domain-containing protein [Hylemonella gracilis ATCC 19624] gi|332040915|gb|EGI77285.1| helix-turn-helix domain-containing protein [Hylemonella gracilis ATCC 19624] Length = 279 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G IR R +SQ L +GI+ + + E G R GA L I+E L P+ Sbjct: 20 IGDLIREWRQQRRLSQMDLALDVGISPRHLSFVETGRARPGAEVLLAIAERLALPL 75 >gi|289550066|ref|YP_003470970.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis HKU09-01] gi|315659305|ref|ZP_07912169.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289179598|gb|ADC86843.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis HKU09-01] gi|315495730|gb|EFU84061.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 71 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R +SQ +L +G++ Q + E G +I++ L + + F Sbjct: 9 NKVKVYRGYSKISQLELARAVGVSRQTINMIENGKYNPSLKLCVNIAKTLGTTLDTLF 66 >gi|254712684|ref|ZP_05174495.1| hypothetical protein BcetM6_04806 [Brucella ceti M644/93/1] gi|254715754|ref|ZP_05177565.1| hypothetical protein BcetM_04816 [Brucella ceti M13/05/1] gi|256015686|ref|YP_003105695.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|261217515|ref|ZP_05931796.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261320390|ref|ZP_05959587.1| transcriptional regulator [Brucella ceti M644/93/1] gi|255998346|gb|ACU50033.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|260922604|gb|EEX89172.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293080|gb|EEX96576.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 182 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF + P + + +++ Sbjct: 59 GMAEFFALEPDAPHRVFYQAEELVEI 84 >gi|227892048|ref|ZP_04009853.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227866158|gb|EEJ73579.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 183 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ +G++Q +L GI+ + Y KG ++ ++ L ++ Sbjct: 6 KRLKEAIENMGITQAELARRSGISRASITDYLKGKYEAKQDKIYPLARALNVSEAWLMGY 65 Query: 77 SPTVCSDISSEENNVMDF 94 S + + + F Sbjct: 66 SDDASNSVDKSFTFTLTF 83 >gi|168207127|ref|ZP_02633132.1| transcriptional regulator, XRE family [Clostridium perfringens E str. JGS1987] gi|170661532|gb|EDT14215.1| transcriptional regulator, XRE family [Clostridium perfringens E str. JGS1987] Length = 134 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF--FF 74 ++ R + +SQ +L + LGI+ + YE G + + L IS+ + + F Sbjct: 12 NNLKTLRKLNLLSQSELSKLLGISRSSLSFYESGESEPTLNVLIKISKFFNVSLDYLIFK 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +++ S ++ + T + L L Sbjct: 72 KIDSKFLANLISYDSLKKQNLDTLEKLDLL 101 >gi|160935566|ref|ZP_02082941.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC BAA-613] gi|158441310|gb|EDP19020.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC BAA-613] Length = 115 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 31/92 (33%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G IR R GMSQ L E LGI + + E L + L P Sbjct: 6 KTLGTVIRKAREEQGMSQASLAEKLGIDVRTIINIENFRGNPKFEVLYPLVTTLRIPADR 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F D + + +S + L+L Sbjct: 66 IFYPETESMGDSKQQLFWELHSLSEKEALELL 97 >gi|329847523|ref|ZP_08262551.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842586|gb|EGF92155.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 469 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 19/115 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R L +SQ ++ E LG++ + E+ V A L ++ + + Sbjct: 8 LFLGGRLKRLRYDLNLSQTQMAEDLGVSPSYLNHLERNQRPVTAQVLLKLAATYDLDLRT 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--DGLQLNRYFIQIDDVKVRQKIIELVRS 125 F D S S E ++++ + P L+L R++I ELV S Sbjct: 68 FTDDSE------PSGEADLVEIFADPLFKDLRL-----------PRREISELVAS 105 >gi|327405551|ref|YP_004346389.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321059|gb|AEA45551.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 273 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G ++L R SQE++ LG+T YE + G L +S PI Sbjct: 1 MKLGNNLKLVRKSKKKSQEEVAADLGLTRSSYSGYENQIAEPGIDTLIALSSYYGVPID 59 >gi|318605304|emb|CBY26802.1| hypothetical protein Y11_13791 [Yersinia enterocolitica subsp. palearctica Y11] Length = 160 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R SQE+L E + + +Q+ E G L I+ V+E +S + Sbjct: 5 RIRELRQARAWSQEQLAELCSLNVRTIQRIENGEQ-ASLETLSAIAAVMELKVSELYSPD 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ 102 + + S E + + + ++ Sbjct: 64 SSQPPETSGEAVD-QRVVDAREAVE 87 >gi|312978143|ref|ZP_07789887.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|310894861|gb|EFQ43931.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 122 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R G S+ K + LG++ Q+ +E ++ L I+ + E+ + Sbjct: 6 QRIKNLRDSKGWSKSKTAQMLGVSAQRYSNWEYDLHEPDYEMLNQIAALFETTTDYLTGK 65 Query: 77 SPTVCSDISSEENNVM 92 S S+ ++++ + Sbjct: 66 SDNPSSESTAKDGTAL 81 >gi|291458800|ref|ZP_06598190.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418596|gb|EFE92315.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 75 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVL-E 67 + +G+RI+ RM GM+Q++LG LG ++ +YE G ++ I+ +L Sbjct: 1 MTIGERIKRVRMKRGMTQKELGIALGFPDRSADVRIAQYESGSRTPKEDLVRQIAAILHG 60 Query: 68 SPISFF 73 P F Sbjct: 61 IPTPFL 66 >gi|289165190|ref|YP_003455328.1| phage repressor [Legionella longbeachae NSW150] gi|288858363|emb|CBJ12231.1| phage repressor [Legionella longbeachae NSW150] Length = 223 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R+ G++ + L E + ++ +E+G G ++ +++ L+ ++ Sbjct: 7 IGQRIKEERVARGLTLKTLEELTDDLKQTRISNWERGYRTPGPEEIKQLAQALDVSPAYL 66 Query: 74 F 74 Sbjct: 67 M 67 >gi|262046896|ref|ZP_06019856.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|260572878|gb|EEX29438.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] Length = 123 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R G S+ K + LG++ Q+ +E ++ L I+ + E+ + Sbjct: 6 QRIKNLRDSKGWSKSKTAQMLGVSAQRYSNWEYDLHEPDYEMLNQIAALFETTTDYLTGK 65 Query: 77 SPTVCSDISSEENNVM 92 S S+ ++++ + Sbjct: 66 SDNPSSESTAKDGTAL 81 >gi|225857563|ref|YP_002739074.1| transcriptional activator [Streptococcus pneumoniae P1031] gi|225725042|gb|ACO20894.1| transcriptional activator [Streptococcus pneumoniae P1031] Length = 299 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPT 79 Sbjct: 61 SLMPDFSA 68 >gi|167569121|ref|ZP_02361995.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 186 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLFSDS 63 >gi|148927479|ref|ZP_01810979.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] gi|147887175|gb|EDK72643.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] Length = 528 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK I+ R+ G +Q ++ + LG + + + E G + L IS+VL S I Sbjct: 29 IGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQNLSMEMLARISDVLNSEI 84 >gi|134046073|ref|YP_001097559.1| MerR family transcriptional regulator [Methanococcus maripaludis C5] gi|132663698|gb|ABO35344.1| transcriptional regulator, MerR family [Methanococcus maripaludis C5] Length = 192 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG +I+ R MS E+L + + ++ E G + + I+ L + F Sbjct: 6 HVGIKIKQTRERQNMSIEELAKASNSSVNLIESLENGDLVPSLTPIFKIARALGVRLGTF 65 Query: 74 FDVSPTVCS 82 D +P Sbjct: 66 LDDAPQSGP 74 >gi|116753476|ref|YP_842594.1| XRE family transcriptional regulator [Methanosaeta thermophila PT] gi|116664927|gb|ABK13954.1| transcriptional regulator [Methanosaeta thermophila PT] Length = 182 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R + +S E++ L + + YE G + AS L I++ L+ +S Sbjct: 8 IGSRIRELRELSKISPEEMAGYLKVPLETYCGYESGHLDIPASLLFKIAQRLDVDMSLLL 67 Query: 75 DVSPTVCS 82 S Sbjct: 68 TGQEPKMS 75 >gi|121607724|ref|YP_995531.1| anaerobic benzoate catabolism transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121552364|gb|ABM56513.1| transcriptional regulator, XRE family with shikimate kinase activity [Verminephrobacter eiseniae EF01-2] Length = 315 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 49/119 (41%), Gaps = 16/119 (13%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + NP+ + +G+R+R R G++++ + GI+ + + E G LQ ++ Sbjct: 23 TDEAKNPLLVALGERVRKLRAQRGLTRKAVALAAGISERHLANLEYGTGNASILVLQQVA 82 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L ++ + D ++ +++ + L+ + ++R+ + L Sbjct: 83 GALHCSLA-------ELQGDFTTRSP---EWLLIRELLE------HRSEPQLRRARLAL 125 >gi|108757722|ref|YP_635287.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108461602|gb|ABF86787.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 117 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 3/99 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G +R R ++QE L E ++ +++ E+G L +S+ L+ + Sbjct: 16 RRFGDHVRKLRTARELTQEALAERSDLSVDAIRRIERGSFSPSLDTLGKLSKGLDVSLKT 75 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 F S+ +E + DF+S G ++ + I Sbjct: 76 LFQGFERERSNAVAE---ICDFLSLRSGREVELAWRVIQ 111 >gi|66394931|ref|YP_239763.1| ORF079 [Staphylococcus phage 85] gi|62635860|gb|AAX90971.1| ORF079 [Staphylococcus phage 85] Length = 69 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 30/54 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R M+Q+ + + LG+T Q V ++EK + +L ++++ + + + Sbjct: 10 VKVWRTNSNMTQQDVADKLGVTKQSVIRWEKDSTELKGLQLYALAKLFNTEVDY 63 >gi|50955531|ref|YP_062819.1| hypothetical protein Lxx19990 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952013|gb|AAT89714.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 116 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R+ +GMSQE + + + E+G + ++ L+ + Sbjct: 13 GQRIRQARLAIGMSQEDIANLAAMHVTNYGRVERGEANSELHTIVRLATALDVDPAGLVQ 72 Query: 76 VSPTVCSDISSEENN-VMDFISTPDGLQ 102 E V DF+ + + Sbjct: 73 GLYGDGMLPDREHAYSVTDFLEAREAAE 100 >gi|49481669|ref|YP_039048.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140498|ref|YP_086329.1| DNA-binding protein [Bacillus cereus E33L] gi|196040491|ref|ZP_03107791.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047511|ref|ZP_03114721.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225867013|ref|YP_002752391.1| DNA-binding protein [Bacillus cereus 03BB102] gi|301056519|ref|YP_003794730.1| DNA-binding helix-turn helix protein [Bacillus anthracis CI] gi|49333225|gb|AAT63871.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973967|gb|AAU15517.1| DNA-binding protein [Bacillus cereus E33L] gi|196021625|gb|EDX60322.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196028623|gb|EDX67230.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|225787723|gb|ACO27940.1| DNA-binding protein [Bacillus cereus 03BB102] gi|300378688|gb|ADK07592.1| DNA-binding helix-turn helix protein [Bacillus cereus biovar anthracis str. CI] Length = 73 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ LG+ +G + Q + E+G I+++ P+ F Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIF 62 >gi|332157993|ref|YP_004423272.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2] gi|331033456|gb|AEC51268.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2] Length = 192 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IP P+D + I+ R LG++QE+L G+T + K E G S I L Sbjct: 4 IPKPIDP---RDIKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60 >gi|330830146|ref|YP_004393098.1| phage transcriptional protein [Aeromonas veronii B565] gi|328805282|gb|AEB50481.1| Phage transcriptional protein [Aeromonas veronii B565] Length = 86 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N ++ + KR+R R L +S+ K + LGI ++ YE G +G Sbjct: 1 MTAQPTQINLLNHHAAKRLRQLREQLKLSRPKFADLLGIPPTTLKNYELGYREIGGGLFL 60 Query: 61 HISEV--LESPISFF 73 I+ L+ I + Sbjct: 61 LIANHPELKRHIDWL 75 >gi|326384142|ref|ZP_08205824.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197007|gb|EGD54199.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 90 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI + R MS+ +L + + + Q V E+G N I +V P+ F Sbjct: 14 NRISVLRAERKMSRAQLADLVDVNVQSVGALERGDNYPSLDLAFRICDVFGLPVEAVF 71 >gi|325679705|ref|ZP_08159279.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108520|gb|EGC02762.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 73 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RIR R +SQ+K+ + +T QQ Q YE G + +++ + + + Sbjct: 5 QRIRDLREDNDLSQQKVADYPEVTRQQYQLYECGKREMPMHLFIKLADFYKVSLDYL 61 >gi|312197902|ref|YP_004017963.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311229238|gb|ADP82093.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 197 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V + +R R +S +L G++ Q + K E+G ++ I++ L Sbjct: 5 NKLVARNVRRFREERKLSLGELARRSGLSKQTLSKIEQGTGNPTIDSIEAIADAL 59 >gi|260551353|ref|ZP_05825553.1| DNA-binding helix-turn-helix protein [Acinetobacter sp. RUH2624] gi|332852788|ref|ZP_08434380.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332871017|ref|ZP_08439630.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|260405516|gb|EEW99008.1| DNA-binding helix-turn-helix protein [Acinetobacter sp. RUH2624] gi|332728999|gb|EGJ60349.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332731777|gb|EGJ63057.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 359 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 10/116 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R+ R G Q L + ++ + K E G+ + ++++VL P+S F++ Sbjct: 11 LRIVRQFRGFGQTALAKMASLSQGTLSKIEAGLLEPNEEMVSNLAKVLNFPVSIFYETYK 70 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE---LVRSIVSSEK 131 +S + ++ + I ++ LV++I E Sbjct: 71 PFGLPLSVHPMYRKNSSIGKRAIEQLEAELNI-------RLFNSMKLVKAIEFEED 119 >gi|302523303|ref|ZP_07275645.1| regulatory protein [Streptomyces sp. SPB78] gi|318062276|ref|ZP_07980997.1| regulatory protein [Streptomyces sp. SA3_actG] gi|318080822|ref|ZP_07988154.1| regulatory protein [Streptomyces sp. SA3_actF] gi|302432198|gb|EFL04014.1| regulatory protein [Streptomyces sp. SPB78] Length = 219 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R GM+ L GI+ + + E G+ R L ++ + Sbjct: 36 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 95 Query: 75 DVSPTVCSDISSEE 88 P + +E Sbjct: 96 GTRPVADPRVRAEP 109 >gi|237748951|ref|ZP_04579431.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes OXCC13] gi|229380313|gb|EEO30404.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes OXCC13] Length = 121 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K + +G+ I +R G++QE + E L I + V + E+G RL ++ Sbjct: 2 QKNKEKAIAKAIGRAIAKKRTEKGLTQEDVAEKLNIGNEAVSRIERGTVIPNVVRLVELA 61 Query: 64 EVLES 68 E+ E Sbjct: 62 EIFEC 66 >gi|210612353|ref|ZP_03289278.1| hypothetical protein CLONEX_01479 [Clostridium nexile DSM 1787] gi|210151613|gb|EEA82620.1| hypothetical protein CLONEX_01479 [Clostridium nexile DSM 1787] Length = 231 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK VG+R++ RR L ++ +LG+ +G+ +Q+YE + V R Sbjct: 1 MKTLKKEITFTAKQVGERVKERRTELNLTMPELGKRVGVNKSTIQRYE--ADGVDPKRTM 58 Query: 61 HI---SEVLESPISFFFDVSPTVCSD 83 I +E L + + +S D Sbjct: 59 IINGLAEALLTTPEWLTGLSEDKEYD 84 >gi|18071275|ref|NP_542320.1| hypothetical protein PBC5p60 [Sinorhizobium phage PBC5] gi|17940381|gb|AAL49625.1|AF448724_62 unknown [Sinorhizobium phage PBC5] Length = 170 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 3/97 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R M+QE+L +G V + E G + L+ ++ VL+ + V+P Sbjct: 51 IKEWRKHRRMTQEQLASAVGSAVSSVSQLESGKQGYSQATLEALAVVLQCSPADLLSVNP 110 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +S L R +V Sbjct: 111 IEGLPDEQPREEARSLLSL---LDNLRNLANAHPERV 144 >gi|15675874|ref|NP_270048.1| hypothetical protein SPy_2126 [Streptococcus phage 370.4] gi|71904454|ref|YP_281257.1| Cro/CI family phage transcriptional regulator [Streptococcus pyogenes phage 6180.3] gi|94991386|ref|YP_599486.1| Cro/CI family phage transcriptional regulator [Streptococcus phage 10270.4] gi|13623109|gb|AAK34769.1| conserved hypothetical protein - phage associated [Streptococcus phage 370.4] gi|71803549|gb|AAX72902.1| phage transcriptional regulator, Cro/CI family [Streptococcus pyogenes phage 6180.3] gi|94544894|gb|ABF34942.1| phage transcriptional regulator, Cro/CI family [Streptococcus phage 10270.4] Length = 68 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R+ G + +++ +G Q + KYEK + + LQ +S + I F Sbjct: 6 LKAARINAGYTLKQVAGAVGKNPQTISKYEKDSSDISLGLLQKLSSLYGVTIDNLF 61 >gi|85704680|ref|ZP_01035782.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85671088|gb|EAQ25947.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 465 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 55/142 (38%), Gaps = 25/142 (17%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R LG++Q+ LG++ + + E + + + +++ Sbjct: 6 LYAGAKLRETRQRLGLTQKDFAGKLGVSLPYLNQMENNNRPLSTTVVLALAQEFG----- 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP-----------------DGLQLNRYFIQIDDV-- 113 FDV+ D +++ + ++ P + L R F+++ Sbjct: 61 -FDVTELSTGDAERMVSDMREALADPVFGDDPPPLADLRLTASNAPALARAFLELHSAYR 119 Query: 114 KVRQKIIELVRSIVSSEKKYRT 135 + +++ L ++ + + ++ Sbjct: 120 QTHERLASLDEALGREDARSQS 141 >gi|326574451|gb|EGE24393.1| peptidase S24-like protein [Moraxella catarrhalis 101P30B1] Length = 233 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R G++Q+++ E + G++ + E G ++ +R ++ + + + Sbjct: 5 NRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSK-STTRAVELAHLFGVDVHWLIS 63 Query: 76 VSPT 79 Sbjct: 64 GEGE 67 >gi|258545393|ref|ZP_05705627.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826] gi|258519362|gb|EEV88221.1| S24 (LexA) family peptidase [Cardiobacterium hominis ATCC 15826] Length = 284 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 33/48 (68%), Gaps = 1/48 (2%) Query: 13 INVGKRIRLRRMILGMS-QEKLGECLGITFQQVQKYEKGVNRVGASRL 59 +++GKR+ +R + G S QE+LG+ LG++F + ++EK + + + +L Sbjct: 1 MSIGKRLLEQRKLAGYSSQEQLGDALGVSFTTIARWEKDQSPIPSDKL 48 >gi|258406011|ref|YP_003198753.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798238|gb|ACV69175.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 117 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R R G++Q +L E GI + E G +G R + ++EVL F Sbjct: 62 LRGARNKEGLTQVELAEKTGIPQSHISSMENGKKEIGKERAKRLAEVLNIDYRVF 116 >gi|225863642|ref|YP_002749020.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225789107|gb|ACO29324.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 403 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEMVEL 72 >gi|283798851|ref|ZP_06348004.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291073389|gb|EFE10753.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 176 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ GM+Q+ LG +G + ++ +YE G + A +++ L+ Sbjct: 1 MAIGERIHFFRLLRGMTQKYLGTIVGFPERSADVRLAQYETGTRKPKAELTAALAQALDV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|224823540|ref|ZP_03696649.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603995|gb|EEG10169.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 205 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 34/81 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V V +++ R +S ++L G++ + + EK + + L I+ L Sbjct: 16 HSVSQAVAAKLKQHRKKQKLSLDELSRRAGVSKGMLVEIEKCIANPSIAILCKIAAALGV 75 Query: 69 PISFFFDVSPTVCSDISSEEN 89 ++ DV+ + + ++ Sbjct: 76 SVADIVDVASAPAARLIEGQD 96 >gi|186473323|ref|YP_001860665.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195655|gb|ACC73619.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 189 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 10/115 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R L + ++ GI+ + + E+G+ + L I+ L + +F Sbjct: 13 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGVKVQYFV 72 Query: 75 DVSPTVCSDISSEENNVMDFIST----------PDGLQLNRYFIQIDDVKVRQKI 119 D + + E F + G QL +++ + R ++ Sbjct: 73 DTPSEERTVCRANELKFFGFADSANLFARMTNLSGGRQLEAILVRMPPGQKRSEV 127 >gi|190015751|ref|YP_001967756.1| probable transcriptional regulator [Clostridium perfringens] gi|86450173|gb|ABC96282.1| probable transcriptional regulator [Clostridium perfringens] Length = 344 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 4/109 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV- 76 I+ R +SQ +L E LG+ + YE+ L +S+++ I + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMNRSIDSLLGLN 71 Query: 77 -SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIEL 122 +D+++ + + FI + + F ++ K+R + EL Sbjct: 72 HPNETTNDLNNSDLSKKIFILNKLIEKNTQSFNDLETSKLRTERMFNEL 120 >gi|319651076|ref|ZP_08005210.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2] gi|317397246|gb|EFV77950.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2] Length = 117 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG IR R ++QE+L E G+ + + E+G + L+ I L+ S Sbjct: 9 KLVGSNIRELRKQKKLTQEELAELSGLQYSFLAGVERGERNITLQTLEKIIVGLKETPSR 68 Query: 73 FFDVSPTVCSDISSEEN--NVMDFISTPDGLQLNRYFIQIDD 112 FD S ++ S +E ++++ + + ++ ++ I D Sbjct: 69 LFDFSKLDDNNFSKQEVLISIVNILEKHEDKEVKLFYRMIKD 110 >gi|312868344|ref|ZP_07728544.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096089|gb|EFQ54333.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 64 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ M+Q L + +G+T Q + E G S I + L+ + F Sbjct: 6 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQLF 62 >gi|307689851|ref|ZP_07632297.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] Length = 63 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R L ++Q++L + LG+T Q + E +S L F Sbjct: 3 NKVKEFRKQLKLTQDELAQELGVTRQTINAIENNKYNPTLELALKMSRFLGVSTESLF 60 >gi|296328537|ref|ZP_06871056.1| XRE family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154346|gb|EFG95145.1| XRE family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 94 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K IR RR L ++QE+ + G++F ++++E + L I+ Sbjct: 7 NIKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFEN-TGEISLFSLIKIA 65 Query: 64 EVLES 68 +LE Sbjct: 66 IILEC 70 >gi|295102584|emb|CBL00129.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 305 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 55/120 (45%), Gaps = 12/120 (10%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+ I+ RR+ LG++QE+L + + + + E G +R+ + + L P Sbjct: 3 NVFLGEYIKQRRLDLGLTQEQLCDGI-CEPMTLSRLENGKQTPSRNRINALLQRLGLPDD 61 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDV--------KVRQKII 120 +F + ++ + + ++ +T P+G + F ++ D +R +++ Sbjct: 62 RYFALLSKNELEMEALQKEIVACNATEKVPEGFEKLAQFEKLADPDDQIAQQFALRSRVL 121 >gi|271966081|ref|YP_003340277.1| hypothetical protein Sros_4684 [Streptosporangium roseum DSM 43021] gi|270509256|gb|ACZ87534.1| hypothetical protein Sros_4684 [Streptosporangium roseum DSM 43021] Length = 224 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 5/105 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P +G+RI RR LG+ +E+L GI + E+ + Sbjct: 1 MAERLNAPGD----LGRRITRRRESLGLDREQLANRAGIAPAYLAYVEQRAAAPAIETIN 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE-NNVMDFISTPDGLQLN 104 ++ L++ + + + + + ++ + T + L+L Sbjct: 57 RLACALDTSTAELLGGTIDLPPGRGTAARHPELEKLDTKECLRLI 101 >gi|255282865|ref|ZP_05347420.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255266639|gb|EET59844.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 212 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 ++ R G +Q +L E G++ + +Q YE K +N+ A + ++ L + Sbjct: 151 NLKRIRTAYGFTQAELAERSGVSLRSIQMYEQRNKNINKASADSMYSLARALGCTMEDLI 210 Query: 75 D 75 + Sbjct: 211 E 211 >gi|219855694|ref|YP_002472816.1| hypothetical protein CKR_2351 [Clostridium kluyveri NBRC 12016] gi|219569418|dbj|BAH07402.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 66 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R LG++QE+L + G+ Q + E +S+ L+ + F Sbjct: 6 NKIKTIRNKLGITQEQLAKKCGVVRQTINCIENDKYDPTLELAFKLSKTLKVKVDELF 63 >gi|206578107|ref|YP_002238269.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|288935257|ref|YP_003439316.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290509310|ref|ZP_06548681.1| DNA-binding protein [Klebsiella sp. 1_1_55] gi|206567165|gb|ACI08941.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|288889966|gb|ADC58284.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289778704|gb|EFD86701.1| DNA-binding protein [Klebsiella sp. 1_1_55] Length = 193 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ + RIR+ R G S L E G + + K E+G + AS L +S Sbjct: 4 IEDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|188591670|ref|YP_001796269.1| hypothetical protein pRALTA_0436 [Cupriavidus taiwanensis] gi|170939065|emb|CAP64081.1| Conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 195 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 2 VGNKKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + +PVD + R+R+ R G S +L E G++ + K E+G A+ L Sbjct: 4 TSSSSTRSPVDPTGAISARVRIERESRGWSMGELAERAGVSKAMISKIERGEASPTATVL 63 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 +S +S ++ + + + + P+ Sbjct: 64 GRLSGAFGLQLSMLLALAEQFGNRLCRAAD--QQVWTDPET 102 >gi|90410131|ref|ZP_01218148.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90329484|gb|EAS45741.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 99 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R ++Q + + L ++ Q E G L I+ V I F Sbjct: 3 LLISEKIKTARTSRDITQVDMAKKLNLSRQTYLNLETGKTSPRCDMLLDIANVTGYEIGF 62 Query: 73 FF 74 F+ Sbjct: 63 FY 64 >gi|322390898|ref|ZP_08064406.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis ATCC 903] gi|321142411|gb|EFX37881.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis ATCC 903] Length = 108 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + KRIR+ R GM+QE+L E + K E + S L+ I E L + Sbjct: 6 KYISKRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIEALNVDLQT 65 Query: 73 FFDV 76 FFD+ Sbjct: 66 FFDL 69 >gi|295677026|ref|YP_003605550.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1002] gi|295436869|gb|ADG16039.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1002] Length = 332 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 27/162 (16%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ + Sbjct: 34 GEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQL 93 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY-------FIQIDD 112 + L P++ V D ++ + + + D L R F Q Sbjct: 94 AATLNCPLA-------EVIGDETTASAEWLLIRELLQGRDQAALQRARIALAEMFAQAPR 146 Query: 113 VKVRQKIIELV------RS----IVSSEKKYRTIEEECMVEQ 144 R+ I L+ +S +++ E+K IE ++EQ Sbjct: 147 DPHRKDRIALIGLRGAGKSTLGRMLAQERKVPFIELTRVIEQ 188 >gi|257868230|ref|ZP_05647883.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874497|ref|ZP_05654150.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257802344|gb|EEV31216.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808661|gb|EEV37483.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 176 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G++I+ R ++QE+ L +T Q V +E N L I+ + + + Sbjct: 20 MEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAIATIFQLSLD 78 >gi|225861807|ref|YP_002743316.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298230083|ref|ZP_06963764.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255252|ref|ZP_06978838.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503760|ref|YP_003725700.1| transcriptional regulator PlcR [Streptococcus pneumoniae TCH8431/19A] gi|225726713|gb|ACO22564.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298239355|gb|ADI70486.1| transcriptional regulator PlcR [Streptococcus pneumoniae TCH8431/19A] gi|327389153|gb|EGE87499.1| transcriptional activator [Streptococcus pneumoniae GA04375] Length = 299 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPT 79 Sbjct: 61 SLMPDFSA 68 >gi|167582978|ref|ZP_02375852.1| possible transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 115 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P P+ I +GKRI+ R SQE L + + E+G+ L + Sbjct: 13 TSSAARPAPISIALGKRIKQCRHEADKSQETLAFEAHVDRTYISAIERGIANPSVETLAN 72 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE 87 I L ++ F V + E Sbjct: 73 ICYSLNVTLAELFAPLDGVSLKPTGE 98 >gi|329888684|ref|ZP_08267282.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328847240|gb|EGF96802.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 65 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R SQ L + LG++ Q V E G I+ + + PI F Sbjct: 3 NRLKVLRAERDWSQAHLADELGVSRQTVNALETGRYDPSLPLAFKIARLFQMPIESIF 60 >gi|327439443|dbj|BAK15808.1| hypothetical protein SSIL_1385 [Solibacillus silvestris StLB046] Length = 71 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GMSQ++L LG+T QQ+ KY K + ++S +L +S ++ Sbjct: 18 GMSQQELALRLGVTRQQINKYNKNRAVMSYQVAYNVSVILGCSMSELYE 66 >gi|315149635|gb|EFT93651.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315171777|gb|EFU15794.1| helix-turn-helix protein [Enterococcus faecalis TX1342] Length = 232 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|300936711|ref|ZP_07151612.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300458170|gb|EFK21663.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 133 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F + Sbjct: 11 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVTGHPLHWFL-LP 69 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P I + + + P +L + F + + + E+ Sbjct: 70 PEEGEQIFTPDTMKIG----PRQRELLQAFSAFPEEDQEKMLQEI 110 >gi|300694677|ref|YP_003750650.1| phage regulatory protein [Ralstonia solanacearum PSI07] gi|299076714|emb|CBJ36054.1| putative phage regulatory protein [Ralstonia solanacearum PSI07] Length = 118 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +G+R+ R G++Q++L E LGI Q + YE G R+ AS Sbjct: 10 KELGERVAEARKAHGLTQQQLAEALGIAQQTLAHYEVGRARLPAS 54 >gi|296452644|ref|ZP_06894337.1| DNA-binding protein [Clostridium difficile NAP08] gi|296880944|ref|ZP_06904891.1| DNA-binding protein [Clostridium difficile NAP07] gi|296258525|gb|EFH05427.1| DNA-binding protein [Clostridium difficile NAP08] gi|296428057|gb|EFH13957.1| DNA-binding protein [Clostridium difficile NAP07] Length = 364 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 55/134 (41%), Gaps = 25/134 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K + L+R G++Q++L +G++ V K+E G + + + L ++ + Sbjct: 4 LNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYLDITFLPQLATYFNITVDE 63 Query: 73 FFDVSPTVCSDISSEENNVM--DFISTP------DGLQLNRYFIQ--------------- 109 P + + ++ N + DF + P + ++ + + Sbjct: 64 LICYEPQMMKEDINKLYNKLCKDFTAKPFDEVMIEIREIIKRYYSCFPLIFRMGLLIVNH 123 Query: 110 --IDDVKVRQKIIE 121 I D K R+ +I+ Sbjct: 124 YDIVDEKKRELLID 137 >gi|296393236|ref|YP_003658120.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180383|gb|ADG97289.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 258 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+ +GKRI+ R G++Q +L I Q + K E G + I++ L Sbjct: 8 DLAIGKRIQALRNERGLTQGQLAAEASKHGDLIYQQTIAKIETGNRGLKFEEGIAIAKAL 67 Query: 67 ES-PISFFFDVSPTV 80 P+ + S Sbjct: 68 NVDPVDLLSEESIEE 82 >gi|296104791|ref|YP_003614937.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059250|gb|ADF63988.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 200 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M V + V RIR R +S ++L ++ + + EKG + L Sbjct: 8 MTEQGADIAQVSLAVANRIRNWRKEKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ L ++ +VS + E + + G Sbjct: 68 KLAAALGISVADIVNVSSEPLVHVIEEAAIPVLWQGEKGGRA 109 >gi|317127466|ref|YP_004093748.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472414|gb|ADU29017.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 429 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 14/102 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+R++ R +SQ + E + + E G L +SE L P ++ Sbjct: 1 MHIGERLKRLRNNNNISQISVCEGI-TSPSHYSNIESGRYEPSEDILVQLSERLHVPAAY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG-----LQLNRYFIQ 109 ++ E + +ST DG L L F++ Sbjct: 60 LL--------NVYDESQKIKKLLSTMDGLLEKDLSLVENFLK 93 >gi|269793680|ref|YP_003313135.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269095865|gb|ACZ20301.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 190 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V +RIR R+ G + + L ++ + + E G R+ +L I++ L + + Sbjct: 6 LDDIVRQRIRGLRLARGWTLDALASRCFLSASTLSRIETGHRRIALDQLVPIAQALGTTL 65 Query: 71 SFFFDVSPTVCSDISSEENNV 91 + I E + Sbjct: 66 DQLVEPEDDEDVVIRPEPETM 86 >gi|256027821|ref|ZP_05441655.1| phage-like protein [Fusobacterium sp. D11] gi|289765774|ref|ZP_06525152.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|289717329|gb|EFD81341.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 118 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++++L+R L +SQE+L E + + + K E G+ + S+++ ++ VL++ + Sbjct: 1 MTLGEKVKLKREELNLSQEELAEKMNYKSKTSIHKIEVGITDLPLSKVKELAAVLKTTPA 60 Query: 72 FFFDVSPTVCSDISSE 87 + + +++ Sbjct: 61 YLMGWEEKPNEEETTK 76 >gi|227356056|ref|ZP_03840447.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163833|gb|EEI48741.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 187 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 3/71 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + P + + + I R G+S ++ GI + + E G L Sbjct: 1 MMSSPSAPIEI---ISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLW 57 Query: 61 HISEVLESPIS 71 I L P S Sbjct: 58 AICVALNIPFS 68 >gi|167464988|ref|ZP_02330077.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 136 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ GK + R G+SQ ++ E LGI + +E + + L ++E + Sbjct: 1 MSFGKTLIQLRESKGLSQYEVAEKLGIKRARYNSWENEIAKPRHDMLHKLAEFYNVSPDY 60 Query: 73 F--FDVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSI 126 ++ + ++ ++ + PD L Y+ I+ + R K+I +V ++ Sbjct: 61 LLGYEKEKEAVPSWATTKDKRDLKKMLEDPDVL----YYDGIEFSPEDRAKMIGIVEAV 115 >gi|170743046|ref|YP_001771701.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197320|gb|ACA19267.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 206 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 14/113 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 23 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSI--- 79 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +E ++ S D L +D KVR I ++++ Sbjct: 80 ------ERVLATGDEEPFIEKSSRADTPILVS-----EDGKVRLAITGWIKTV 121 >gi|254976707|ref|ZP_05273179.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255094090|ref|ZP_05323568.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255315841|ref|ZP_05357424.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255518503|ref|ZP_05386179.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255651622|ref|ZP_05398524.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|306521425|ref|ZP_07407772.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 70 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+Q +L + +G+ + + E G I++V + + F+ Sbjct: 8 KIKEYREKLLMTQNELAKSVGVRRETIVHLENGKYNPSLKLAMDIAKVFGTTVENLFEFI 67 Query: 78 PT 79 Sbjct: 68 EE 69 >gi|332523396|ref|ZP_08399648.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332314660|gb|EGJ27645.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 113 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 36/74 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KRIRL R+ G++QE+L E + V K E V L+ + + LE F Sbjct: 9 YISKRIRLLRLNKGLTQEQLEEKADLGTNYVYKLENQSTNVKVKTLEKVMKALEVDFEEF 68 Query: 74 FDVSPTVCSDISSE 87 FD+S ++ SE Sbjct: 69 FDISLVEKNEDLSE 82 >gi|332297016|ref|YP_004438938.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180119|gb|AEE15807.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 100 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 10/95 (10%) Query: 12 DINVG--KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 D ++ + ++ R G SQ + E ++ + E G + + ++ VLE P Sbjct: 3 DYHIQFIRNLKFFRKQKGFSQSEFAERCDVSNGTIGNIECGAAKPSFDLILVMAAVLEIP 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + F +D ++E+ + +S + L Sbjct: 63 PARLF-------ADPAAEKEPAAEILS-HEAKALV 89 >gi|330890951|gb|EGH23612.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 182 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGGRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 58 MVEFFSEETVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|325960175|ref|YP_004291641.1| cupin 2 barrel domain-containing protein [Methanobacterium sp. AL-21] gi|325331607|gb|ADZ10669.1| Cupin 2 conserved barrel domain protein [Methanobacterium sp. AL-21] Length = 184 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + +R++ R + + E + LG+ + + YE+G + AS L I+++L+ + Sbjct: 6 IEIAQRVKELRELSDIETEDIAASLGVPIETYRNYEEGKLDIPASVLYEIAQILKVDMGL 65 Query: 73 FFDVSPT 79 T Sbjct: 66 LLTGEET 72 >gi|302037924|ref|YP_003798246.1| hTh-type transcriptional regulator [Candidatus Nitrospira defluvii] gi|300605988|emb|CBK42321.1| HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] Length = 89 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++VG+ +R+ R + G++Q +L I+ + E +G R + ++ VL+ + Sbjct: 16 VSVGESVRIVRELQGLTQSELARRTKISQSTISAIENDTINLGVERAKTLARVLQCHPA 74 >gi|302384441|ref|YP_003820264.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302195069|gb|ADL02641.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 72 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 17 KRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R G M+Q L +G+T Q + E+G I+ V I+ F Sbjct: 10 NRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAAVFGVEITAVF 68 >gi|266620403|ref|ZP_06113338.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867980|gb|EFD00279.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 115 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 RI R + Q LG+ LG++ Q V K E + + + L I++ + + Sbjct: 4 NRIYSLRRQKKIPQALLGDLLGVSQQTVSKIESQPIPDISSELLCRIADYFGVTADYLME 63 Query: 76 VSPTVCS 82 S C Sbjct: 64 RSEQSCD 70 >gi|257077759|ref|ZP_05572120.1| predicted protein [Enterococcus faecalis JH1] gi|256985789|gb|EEU73091.1| predicted protein [Enterococcus faecalis JH1] Length = 268 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 42 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 101 Query: 72 FF 73 + Sbjct: 102 WL 103 >gi|239504169|ref|ZP_04663479.1| putative repressor protein from bacteriophage [Acinetobacter baumannii AB900] Length = 254 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R ++Q +L + G++ V +EK A L ++ S+ + Sbjct: 8 GQRIRALRREKKLTQGELAKIAGVSAPNVTGWEKDAYAPKADPLSKMAAYFGVSTSYITN 67 Query: 76 VSPT 79 + Sbjct: 68 GDES 71 >gi|238923145|ref|YP_002936658.1| hypothetical protein EUBREC_0738 [Eubacterium rectale ATCC 33656] gi|238874817|gb|ACR74524.1| Hypothetical protein EUBREC_0738 [Eubacterium rectale ATCC 33656] Length = 80 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R+R R +Q+++ + LG + +YE+G N + L + + + Sbjct: 13 QRMRNLREDNDKTQQQIADYLGTSQTMYARYERGANELPIHHLLALCKYYNVSADY 68 >gi|307154063|ref|YP_003889447.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984291|gb|ADN16172.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 82 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 VG+ IR R + ++QE+ +G+ F V ++EKG L+ I+ L+ Sbjct: 15 VGQLIRALRQEMQLTQEQFAGMVGVVFTTVNRWEKGHANPSPMALKIIAMKLD 67 >gi|153870922|ref|ZP_02000218.1| transcriptional regulator, XRE family protein [Beggiatoa sp. PS] gi|152072613|gb|EDN69783.1| transcriptional regulator, XRE family protein [Beggiatoa sp. PS] Length = 114 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R+ +SQ L E +G++ + EKG V + + ++ P Sbjct: 22 LGAMLKAARIECHISQADLAERVGVSRYTIGLLEKGNPNVAIGTVFEAATIVGIP---LM 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 P + +S N++ + + Sbjct: 79 GNDPRQLTKLSQAIANLVQILPSKG 103 >gi|152988136|ref|YP_001347819.1| hypothetical protein PSPA7_2452 [Pseudomonas aeruginosa PA7] gi|150963294|gb|ABR85319.1| hypothetical protein PSPA7_2452 [Pseudomonas aeruginosa PA7] Length = 126 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G R++ R+ G SQ++LG +G+ ++ +YE+ + Q ++ VL+ P+ Sbjct: 14 LGTRLKAARIRAGYSQKQLGMLVGMDEFSASARMNQYERERHSPNMRTSQQLAMVLQVPM 73 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 ++ + + I + +F Sbjct: 74 AYLYCPEDELAELILKVSSLTPEF 97 >gi|134093774|ref|YP_001098849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] gi|133737677|emb|CAL60722.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 78 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 4 NKKIPNPVDINV----GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 K + D+++ G R+R R LG+SQE L E G+ + + E+G + L Sbjct: 2 TKDSKHSDDVSLRQKYGSRLRFAREALGISQEALAEKAGLHRTYIGQVERGERNISIDNL 61 Query: 60 QHISEVLE 67 + +++ + Sbjct: 62 ERLADAVG 69 >gi|325104005|ref|YP_004273659.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324972853|gb|ADY51837.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 75 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVGKR+ R ++QEKL E G+ +Q+ + E+ V S ++ I++ L+ +S Sbjct: 12 INVGKRLMEIREAKNITQEKLQELTGLDIRQIGRIERAETNVSISSIKLIADCLKISVSE 71 Query: 73 FFDV 76 DV Sbjct: 72 LLDV 75 >gi|320105393|ref|YP_004180983.1| Cupin 2 barrel domain-containing protein [Terriglobus saanensis SP1PR4] gi|319923914|gb|ADV80989.1| Cupin 2 conserved barrel domain protein [Terriglobus saanensis SP1PR4] Length = 233 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R+ M +LG G++ + + E G L I+ V +++FF Sbjct: 28 IGERIKALRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLARIAMVFSKDLNYFF 87 Query: 75 DVSPTV 80 + P Sbjct: 88 EPEPRT 93 >gi|304407914|ref|ZP_07389564.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304342933|gb|EFM08777.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 72 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 14 NVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ IR R G M+Q++L + +G+T Q + EKG I+ V + + Sbjct: 5 HITSNIRSLRFNHGEMTQQQLADLVGVTRQTIVAIEKGKYSPSLELAFRIARVFKLSLEE 64 Query: 73 FF 74 F Sbjct: 65 VF 66 >gi|298292822|ref|YP_003694761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929333|gb|ADH90142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 72 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ R ++QE++ E G++ Q + E+G L ++ L+ Sbjct: 5 KLVGRNFARLRQAKDLTQEQVAERSGLSQQYLSGLERGRRNPTIITLYELARALDVS 61 >gi|308071686|ref|YP_003858295.1| hypothetical protein pCB42_p1 [Leuconostoc citreum] gi|295913739|dbj|BAJ07252.1| hypothetical protein [Leuconostoc citreum] Length = 163 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R G++Q++L + +T + VQ+ E G + V S L I+ L PIS FD Sbjct: 5 NVSQLRKQHGLTQQELADKSYVTIRTVQRLEAGED-VSLSSLSAIANALSVPISGLFDDI 63 Query: 78 PTVCSDISSEENNVMDF 94 +E ++D+ Sbjct: 64 EQK-----EKEQEILDY 75 >gi|296105700|ref|YP_003617400.1| hypothetical protein lpa_00283 [Legionella pneumophila 2300/99 Alcoy] gi|295647601|gb|ADG23448.1| hypothetical protein lpa_00283 [Legionella pneumophila 2300/99 Alcoy] Length = 81 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +P I +GK IR R G SQE + + + E+G + L I+ + Sbjct: 2 KEKHPNLIKIGKLIRDTRKEKGYSQEDFASQAQLGRTYMGRIERGEQNMTIQTLIQIALI 61 Query: 66 LESPIS 71 L ++ Sbjct: 62 LGVEVA 67 >gi|294492433|gb|ADE91189.1| putative transcriptional regulator DicA [Escherichia coli IHE3034] Length = 125 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F + Sbjct: 3 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVTGHPLHWFL-LP 61 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P I + + + P +L + F + + + E+ Sbjct: 62 PEEGEQIFTPDTMKIG----PRQRELLQAFSAFPEEDQEKMLQEI 102 >gi|189462857|ref|ZP_03011642.1| hypothetical protein BACCOP_03556 [Bacteroides coprocola DSM 17136] gi|189430473|gb|EDU99457.1| hypothetical protein BACCOP_03556 [Bacteroides coprocola DSM 17136] Length = 105 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+ I+ R ++QE+LGE +G+ Q+ K E G + + S + + + Sbjct: 37 IGEAIKQTREAKNLTQEELGELMGVKRAQISKIESGKS-ITFSTIIRAFKAMGV 89 >gi|163789136|ref|ZP_02183579.1| helix-turn-helix family protein [Flavobacteriales bacterium ALC-1] gi|159875549|gb|EDP69610.1| helix-turn-helix family protein [Flavobacteriales bacterium ALC-1] Length = 66 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I++ R IL ++Q+ L + +G++ Q + E +SEV P++ FF +S Sbjct: 5 IKVERAILSLTQDDLAKKIGVSRQTINSIEANRYVPSTVLALKLSEVFNKPVNEFFKLS 63 >gi|90412517|ref|ZP_01220520.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90326554|gb|EAS42960.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 212 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ I G+SQ++LGE LG+ + + G + L+ I+E L + I + Sbjct: 5 ERIKQLAKIQGISQKQLGESLGLQQGTMSRKLSGKYGIEVRELERIAETLNTSIGYLLTG 64 Query: 77 SPTVCSDISSE 87 + ++ Sbjct: 65 QIDTGTQATTA 75 >gi|18310430|ref|NP_562364.1| transcriptional regulator [Clostridium perfringens str. 13] gi|18145110|dbj|BAB81154.1| probable transcriptional regulator [Clostridium perfringens str. 13] Length = 175 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ ++L IT Q+ E G + L++I+ L + + + Sbjct: 6 LGEKIKRRRKELNMTLKELAGE-RITPGQISLVESGRSNPSMDLLEYIAITLNTSVEYLM 64 Query: 75 DVSPTVCSDI 84 + I Sbjct: 65 ETEKIQAEKI 74 >gi|51597909|ref|YP_072100.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108809407|ref|YP_653323.1| putative transcriptional regulator [Yersinia pestis Antiqua] gi|108813719|ref|YP_649486.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|145597534|ref|YP_001161610.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|153997450|ref|ZP_02022550.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|165927582|ref|ZP_02223414.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937413|ref|ZP_02225976.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|166012119|ref|ZP_02233017.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214594|ref|ZP_02240629.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167420515|ref|ZP_02312268.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425474|ref|ZP_02317227.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466471|ref|ZP_02331175.1| putative transcriptional regulatory protein [Yersinia pestis FV-1] gi|218930622|ref|YP_002348497.1| putative transcriptional regulator [Yersinia pestis CO92] gi|229836747|ref|ZP_04456912.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|229839352|ref|ZP_04459511.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899916|ref|ZP_04515057.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904228|ref|ZP_04519339.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|270488666|ref|ZP_06205740.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294505211|ref|YP_003569273.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|51591191|emb|CAH22856.1| putative transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108777367|gb|ABG19886.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108781320|gb|ABG15378.1| putative transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115349233|emb|CAL22200.1| putative transcriptional regulatory protein [Yersinia pestis CO92] gi|145209230|gb|ABP38637.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149289087|gb|EDM39167.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|165914518|gb|EDR33132.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920476|gb|EDR37753.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165988959|gb|EDR41260.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204216|gb|EDR48696.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961321|gb|EDR57342.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055488|gb|EDR65281.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678346|gb|EEO74451.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|229687408|gb|EEO79483.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695718|gb|EEO85765.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705690|gb|EEO91699.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|262363273|gb|ACY59994.1| putative transcriptional regulatory protein [Yersinia pestis D106004] gi|262367348|gb|ACY63905.1| putative transcriptional regulatory protein [Yersinia pestis D182038] gi|270337170|gb|EFA47947.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294355670|gb|ADE66011.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|320017231|gb|ADW00803.1| putative transcriptional regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 135 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +Q+++ +G+ Q KYE G++ A +L ++E+L + I + Sbjct: 19 GLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYLLL 78 Query: 76 VSPTVCSDI 84 S S I Sbjct: 79 GSSNETSSI 87 >gi|256957267|ref|ZP_05561438.1| predicted protein [Enterococcus faecalis DS5] gi|256947763|gb|EEU64395.1| predicted protein [Enterococcus faecalis DS5] Length = 269 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 43 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 102 Query: 72 FF 73 + Sbjct: 103 WL 104 >gi|255281217|ref|ZP_05345772.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255268174|gb|EET61379.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 177 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ GM+Q+ LG +G + ++ +YE G + A +++VLE Sbjct: 1 MAIGERIHFFRLLRGMTQKYLGTAVGFPERSADVRLAQYETGSRKPKADLTAALAQVLEV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|239630947|ref|ZP_04673978.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065269|ref|YP_003787292.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|239527230|gb|EEQ66231.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437676|gb|ADK17442.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 202 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N K++ RM M+Q L E L ++ V +E N + I+ + E + Sbjct: 1 MNFSKQLHQIRMAHQMTQANLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDT 60 Query: 73 FFDVSPTVCSDISSEEN 89 P + + + Sbjct: 61 LILDDPKLNEKLIHDSK 77 >gi|218290222|ref|ZP_03494376.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239697|gb|EED06888.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 382 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R + G+++ +L +GIT Q + E+G +++ L + + FD Sbjct: 35 VKPLRELAGLTKSELARRVGITPQALGLIEQGKVSPSTHVALRLAKALGTTVESLFDPEQ 94 Query: 79 TVCSDIS 85 D+ Sbjct: 95 GAAHDLG 101 >gi|254973959|ref|ZP_05270431.1| DNA-binding protein [Clostridium difficile QCD-66c26] gi|255091345|ref|ZP_05320823.1| DNA-binding protein [Clostridium difficile CIP 107932] gi|255313003|ref|ZP_05354586.1| DNA-binding protein [Clostridium difficile QCD-76w55] gi|255515762|ref|ZP_05383438.1| DNA-binding protein [Clostridium difficile QCD-97b34] gi|255648855|ref|ZP_05395757.1| DNA-binding protein [Clostridium difficile QCD-37x79] gi|260682072|ref|YP_003213357.1| DNA-binding protein [Clostridium difficile CD196] gi|260685670|ref|YP_003216803.1| DNA-binding protein [Clostridium difficile R20291] gi|306518972|ref|ZP_07405319.1| DNA-binding protein [Clostridium difficile QCD-32g58] gi|260208235|emb|CBA60614.1| DNA-binding protein [Clostridium difficile CD196] gi|260211686|emb|CBE01972.1| DNA-binding protein [Clostridium difficile R20291] Length = 364 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+ K + L+R G++Q++L +G++ V K+E G + + L ++ + Sbjct: 4 LNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYPDITFLPQLATYFNITVD 62 >gi|38049246|gb|AAR10417.1| putative repressor protein [Enterococcus faecium] Length = 63 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R LG++QE+L + G+ Q + E +S++L+ + F Sbjct: 3 NKIKAIRKKLGITQEQLAKECGVVRQTINCIENDKYDPTLELAFKLSKMLKVKVDELF 60 >gi|71904298|ref|YP_281101.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71803393|gb|AAX72746.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] Length = 68 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R +SQ+ L + +G++ Q + EKG + I VL+ + F Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|27375149|ref|NP_766678.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27348285|dbj|BAC45303.1| bsr0038 [Bradyrhizobium japonicum USDA 110] Length = 93 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R+ G+SQE+L GI + E+ L I+E L+ +S FF + Sbjct: 10 NVRRIRVNRGISQEQLAWKAGIDRSYMSSLERQSKNPTIDLLDRIAETLDVQLSEFFVLP 69 Query: 78 PTVC 81 P Sbjct: 70 PKGA 73 >gi|27377584|ref|NP_769113.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27380303|ref|NP_771832.1| hypothetical protein blr5192 [Bradyrhizobium japonicum USDA 110] gi|27350728|dbj|BAC47738.1| bll2473 [Bradyrhizobium japonicum USDA 110] gi|27353467|dbj|BAC50457.1| blr5192 [Bradyrhizobium japonicum USDA 110] Length = 199 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R+ + +L E G++ + K E+G L I+ V + FF Sbjct: 15 IGPKIRRLRLRKKLGLVQLSEHTGLSPAMLSKIERGHLFPTLPTLLRIALVFGVGLDHFF 74 Query: 75 DVSPT 79 Sbjct: 75 REDSD 79 >gi|326797597|ref|YP_004315416.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326548361|gb|ADZ76746.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 122 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRR-MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+ I+ R G+ +E + + LGIT + E + V SRL +SE+ Sbjct: 1 MKIGENIKEIREKEKGLHKEDVAKALGITVKAYSNIENNIADVTVSRLYELSEIFGVAPE 60 Query: 72 F 72 + Sbjct: 61 Y 61 >gi|323126423|gb|ADX23720.1| DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 110 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KRIR R+ GM+QE+L E + K E + + L+ + L+ I+ F Sbjct: 9 FIAKRIRKIRLQRGMTQEQLEEKADLGVNYAYKLENLATNIKINTLEKVLNALDITITDF 68 Query: 74 FDVS 77 FD Sbjct: 69 FDTP 72 >gi|302336013|ref|YP_003801220.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319853|gb|ADK68340.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 109 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 14/114 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R GM+ ++ LG+ K+E GVN + + +++VL+ + Sbjct: 3 QLKRLRKERGMTAREMAAKLGMKADTYGKWEYGVNGMSIENVCAVADVLDVTLDELV-GR 61 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 P S ++ + L + + +D + R +I+ S + Sbjct: 62 PVSVSALAERKTY------------LTNLYERCEDGR-RDTLIKTAESFAELDS 102 >gi|300949501|ref|ZP_07163497.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] gi|300451077|gb|EFK14697.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] Length = 231 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + +G RIR R+ + +L E +G+ + + E G + L +++ L + Sbjct: 1 MKIGSRIRQLRLAKNIKIAELAEAVGVDAANISRLETGKQKQFSEQTLNRLAQALSVSVP 60 Query: 72 FFF 74 F Sbjct: 61 DLF 63 >gi|294789222|ref|ZP_06754461.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] gi|294482963|gb|EFG30651.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] Length = 120 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 9/98 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-- 70 + V +IR+ R I SQE++ E L ++ K E+G + + +L+ I+++ + Sbjct: 1 MEVHDKIRVMREINQWSQEEMAEKLAMSANGYAKIERGQSSLSIDKLKQIAQIFNIDMVD 60 Query: 71 -------SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 +FFF + S ++ + + D L Sbjct: 61 LLANQDKTFFFSIGDHTNSHNVNQADKFQMLLEAKDEL 98 >gi|227520119|ref|ZP_03950168.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227072463|gb|EEI10426.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] Length = 232 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|224824341|ref|ZP_03697449.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603760|gb|EEG09935.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 194 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + KRI R S EKL E G++ + E+ A+ L +++ L + Sbjct: 3 LDTRLAKRIHSLRKSRAYSLEKLAELSGVSRSMISLIERAETSATAAVLNKLADALGVSL 62 Query: 71 SFFF--DVSPTVCSDISSEENNVM 92 + F + V S +S E + Sbjct: 63 ASLFSEEAEELVASPLSRAEEQPV 86 >gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 196 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VG+ IR R G+SQ L G++ Q + E G L+ ++ L+ Sbjct: 4 VGETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRTSPSLKSLEKLAGALQV 57 >gi|167747456|ref|ZP_02419583.1| hypothetical protein ANACAC_02177 [Anaerostipes caccae DSM 14662] gi|317471184|ref|ZP_07930554.1| hypothetical protein HMPREF1011_00902 [Anaerostipes sp. 3_2_56FAA] gi|167652818|gb|EDR96947.1| hypothetical protein ANACAC_02177 [Anaerostipes caccae DSM 14662] gi|316901331|gb|EFV23275.1| hypothetical protein HMPREF1011_00902 [Anaerostipes sp. 3_2_56FAA] Length = 69 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++Q +L E +G+T Q + E G + I++ I F Sbjct: 4 RIQELRKDQKVTQMELAESVGVTRQTIISLENGRYKASLVLAHKIAQFFGVTIEDIFIFD 63 Query: 78 PTVCS 82 + Sbjct: 64 QEEEN 68 >gi|160934353|ref|ZP_02081740.1| hypothetical protein CLOLEP_03224 [Clostridium leptum DSM 753] gi|156867026|gb|EDO60398.1| hypothetical protein CLOLEP_03224 [Clostridium leptum DSM 753] Length = 176 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RIR R + GM+Q+ LG +G ++ +YE G A ++++ VL Sbjct: 1 MAIGERIRFFRNLRGMTQKYLGTVVGFPENTADIRMAQYESGSRTPKADLTENLAGVLGV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|94968567|ref|YP_590615.1| MerR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550617|gb|ABF40541.1| transcriptional regulator, MerR family [Candidatus Koribacter versatilis Ellin345] Length = 292 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 NVG R+RL R G+S ++ E +GI+ + E+ + L+ +++ + I Sbjct: 117 NVGLRLRLVRTSRGLSLAQVAEAVGISVGFLSAIERSAMSASVATLRKLAKFYKLNILDL 176 Query: 74 FDVSPTVCSDISSEENNVMD 93 FD S + E +D Sbjct: 177 FDQSGGRQYLVRPAERRQLD 196 >gi|322391527|ref|ZP_08064996.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145610|gb|EFX41002.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 64 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGKSQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNNLF 59 >gi|311070727|ref|YP_003975650.1| putative transcriptional regulator [Bacillus atrophaeus 1942] gi|310871244|gb|ADP34719.1| putative transcriptional regulator [Bacillus atrophaeus 1942] Length = 72 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G+RIR R + G +QE + LGI+ + + E+G + ++ +++ L Sbjct: 7 GRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSPAIIKDVADALNIS 60 >gi|322434064|ref|YP_004216276.1| Cupin 2 conserved barrel domain protein [Acidobacterium sp. MP5ACTX9] gi|321161791|gb|ADW67496.1| Cupin 2 conserved barrel domain protein [Acidobacterium sp. MP5ACTX9] Length = 267 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R+ M +LG G++ + + E G L I+ V ++FFF Sbjct: 45 IGERIKYLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLARIAMVFSKDLNFFF 104 Query: 75 DVSPTV 80 + P Sbjct: 105 EPEPQT 110 >gi|294499973|ref|YP_003563673.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|295705350|ref|YP_003598425.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294349910|gb|ADE70239.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294803009|gb|ADF40075.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 183 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 3/94 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K + R ++ +++ E G++ + + EKG + + L I+ L+ S F Sbjct: 8 IAKNLVKLRKNRNLTLDQVSELTGVSKAMLAQIEKGKSSPTVTTLWKIANGLQVSFSVFM 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 +S ++ +D I+ G L F Sbjct: 68 KEDTPDVQKVSIKQ---LDPITDNKGDYLVYSFF 98 >gi|289549615|ref|YP_003470519.1| putativetranscriptional regulator [Staphylococcus lugdunensis HKU09-01] gi|289179147|gb|ADC86392.1| putativetranscriptional regulator [Staphylococcus lugdunensis HKU09-01] Length = 368 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K I+ +R LG++Q+KL L IT + K+E G L ++++ + Sbjct: 2 IKINKVIKAQRTKLGLTQDKLAAYLDITKPTISKWENGSLMPDIQLLPKLAKLFNMSVDE 61 Query: 73 FFDVSPTVCSDISSE 87 D + + ++ Sbjct: 62 LLDYQDVLTKEDATH 76 >gi|262201756|ref|YP_003272964.1| hypothetical protein Gbro_1813 [Gordonia bronchialis DSM 43247] gi|262085103|gb|ACY21071.1| Protein of unknown function DUF2083,transcriptional regulator [Gordonia bronchialis DSM 43247] Length = 474 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 55/128 (42%), Gaps = 12/128 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+R R G+SQ L + ++ V + E + L ++ + + Sbjct: 1 MFIGARLRRLRDERGLSQAGLARRVELSTSYVNQLENDQRPITVPVLLTLTREFDLDADY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKIIELVRSIV 127 F +P + + ++ +V + PD ++ R +I + V + ++ + R ++ Sbjct: 61 F---APDGDARLVADLADV--LTAQPDSGEVTRA--EITELVARMPAVGRTLVGMHRRLI 113 Query: 128 SSEKKYRT 135 +++ + + Sbjct: 114 AADTELES 121 >gi|223983799|ref|ZP_03633967.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM 12042] gi|223964238|gb|EEF68582.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM 12042] Length = 83 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ R G+ QE+L L ++ Q + E G I+ + I F Sbjct: 19 NRLEALRKARGIKQEELAAALEVSRQTIGSLENGRYNPSILLAFKIARYFDVSIEEVF 76 >gi|254441331|ref|ZP_05054824.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] gi|198251409|gb|EDY75724.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] Length = 131 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R + ++Q++L + +GI ++ +E+ ++ A+RL + +L + + Sbjct: 19 GDRLAAARDVAQLTQKELAQRVGIKTSTLRNWEEDLSEPRANRLSILCGILGVSLRWLLT 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + D + L+ R Q+ R ++E Sbjct: 79 AEGEGLLAPDEDAPIAPDVSAMLTELRAVRA--QMKQSTERLALLE 122 >gi|170690931|ref|ZP_02882097.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170144180|gb|EDT12342.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 207 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 30 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 89 Query: 75 DVSPTVCSDISSEENNV 91 T + + + + Sbjct: 90 APQKTPEAIAVAGPHEI 106 >gi|149919002|ref|ZP_01907487.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149820155|gb|EDM79574.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+R+R R G++QE L E ++ V++ E L +++ L P Sbjct: 9 LGERLRTLRKRRGLTQEALAEAAEVSVDSVRRLENAAFSPSFDTLTKLAKGLNVP 63 >gi|159900256|ref|YP_001546503.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893295|gb|ABX06375.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 910 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + G ++ RR L ++Q++L +G ++K E + Q +++ P Sbjct: 4 LDASFGMWLKQRRKTLDLTQDELAHLVGCATVTIRKIEANTLKPSTQIAQRLAQCCNVP 62 >gi|111025296|ref|YP_707716.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110824275|gb|ABG99558.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 254 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 36/89 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G ++ R+ +S ++ + LGI+ + + E G + L ++ VLE + Sbjct: 33 VEEEIGVALKRARLDKKLSLRQVADQLGISTSLLSQVENGKTQPSVKTLFGLATVLEVSL 92 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 + ++ ++ + D Sbjct: 93 DKILSGRSGLDIELPADRDAAAGIQRAAD 121 >gi|75676148|ref|YP_318569.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74421018|gb|ABA05217.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 410 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 13/115 (11%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D +G R+R R G+SQ+ + E LG+ V E G V L ++++ Sbjct: 2 IDAAQLGDRLRAARERRGLSQQAVAEALGLPRTAVTNMESGTRSVSTLELTRLADLYGQQ 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +FF + + + +P D +VR+ I++L + Sbjct: 62 ATFFLSMHEEAEDLSIVLHRALPEMAGSPH-----------LDGEVRR-ILDLYQ 104 >gi|325961967|ref|YP_004239873.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468054|gb|ADX71739.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 191 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 16/114 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R+ + L E GI+ + + E G R L +++ + P+ Sbjct: 12 VGPRLRALRLSRETTLSALAEATGISVSTLSRLESGQRRPNLELLLPLAKAHQVPLDELV 71 Query: 75 DVSPTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQI--------DDVKV 115 T I + ++ P G+Q + I D KV Sbjct: 72 GAPATGDPRVHLRPIEAHGMTIVPLTRKPGGIQ---AYKHILPAGPLEEPDPKV 122 >gi|323490470|ref|ZP_08095677.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323395874|gb|EGA88713.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 145 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G +Q LG+ + +T Q + EKG + +++ L++ ++ F Sbjct: 78 NRVKELRARYGFTQSDLGKQVDVTRQTIAFIEKGEFSPSITLSLKLAKALQTNVNDLF 135 >gi|317484077|ref|ZP_07943008.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924665|gb|EFV45820.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 97 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+ G IR R G+SQ+ L + + ++ + E G L I+ Sbjct: 20 KKSPDA-----GTAIRHFRHEAGLSQDGLADRMDVSPSYISMLESGKRYPSIEMLIRIAL 74 Query: 65 VLES 68 L Sbjct: 75 ALNI 78 >gi|309789599|ref|ZP_07684180.1| BsaWI endonuclease [Oscillochloris trichoides DG6] gi|308228335|gb|EFO81982.1| BsaWI endonuclease [Oscillochloris trichoides DG6] Length = 366 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 4/106 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GK ++ +R + +QE L E +G+ + + + E G + ++ I+ L F Sbjct: 8 GKNVQFKRRQINWTQEDLAEAVGVDTRTISRIETGETATEFTTIEKIASALNIDAYQLFI 67 Query: 75 --DVSPTVCSDISSEENNVMDFISTPDGLQLN-RYFIQIDDVKVRQ 117 D + SD+ + + + + + + L + I I K R+ Sbjct: 68 HPDTPEHINSDLIQKISLRAQELYSENIMLLAKKSGIDIPTTKSRK 113 >gi|300172366|ref|YP_003771531.1| Cro/CI family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886744|emb|CBL90712.1| transcriptional regulator, Cro/CI family [Leuconostoc gasicomitatum LMG 18811] Length = 196 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GK+I+ R SQE+L E ++ Q + +E + L +S V + + Sbjct: 1 MELGKQIKNYRTTFNYSQEQLAEKTFVSRQTISNWETNKSYPDIQSLLLLSSVFGTSLD 59 >gi|269123234|ref|YP_003305811.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] gi|268314560|gb|ACZ00934.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] Length = 77 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R + ++Q+KL E + IT Q + E G I+ L++ I FD+ Sbjct: 3 NRIKEVRKVKNITQQKLVENISITRQYISLIELGNETPSLKVANEIAMSLDTCIYSIFDL 62 Query: 77 SPT 79 T Sbjct: 63 DGT 65 >gi|239907891|ref|YP_002954632.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239797757|dbj|BAH76746.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 107 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R G++Q +L E ++ + + + E+G L ++S L+ + F Sbjct: 8 LGKRIQSLRKKAGLTQLELAEKANLSLKHLGEIERGRGNPTLESLHNLSVALDISLMKLF 67 Query: 75 DVSPTVCSDISSEE 88 D+ + + +EE Sbjct: 68 DLEVDLLTTKVTEE 81 >gi|167618929|ref|ZP_02387560.1| DNA-binding protein [Burkholderia thailandensis Bt4] Length = 192 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVS 61 Query: 70 ISFFFDVSPTVCSDISSEENNV 91 ++ F+ + E V Sbjct: 62 LASLFEGDRAASPLSRAAEQPV 83 >gi|187923161|ref|YP_001894803.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714355|gb|ACD15579.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 129 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G RI+ RR L +S +L +GI+ V K EK ++ A L ++ L++ + Sbjct: 4 IGTRIQRRREDLNLSTRQLAGAVGISNAAVTKLEKDQSKSPSAENLFRLAIALKTDPQYL 63 >gi|145592882|ref|YP_001157179.1| XRE family transcriptional regulator [Salinispora tropica CNB-440] gi|145302219|gb|ABP52801.1| transcriptional regulator, XRE family [Salinispora tropica CNB-440] Length = 191 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +PN +G IR R +S +L E G++ + + E+G+ + A LQ Sbjct: 1 MASGKDLPN-----IGGFIRDLRRSAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQ 55 Query: 61 HISEVLESP 69 ++ L Sbjct: 56 QLASALRVS 64 >gi|325261432|ref|ZP_08128170.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032886|gb|EGB94163.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 68 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 33/56 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+ R+ ++Q+++ + LGI + ++YEKG + + L ++++ ++ + + Sbjct: 4 KRLEDLRVDHDLTQKQIADHLGIQREVYRRYEKGTHTIPIDYLIKLADLYKTSVDY 59 >gi|306827322|ref|ZP_07460609.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] gi|304430469|gb|EFM33491.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] Length = 232 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ G++Q +LG L + + +EKG N L + + +F Sbjct: 4 GHQLKTVRLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYF 61 >gi|297660613|ref|YP_003710324.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] gi|297377489|gb|ADI39318.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] Length = 78 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + P+ G ++R+RR +G++QE+L E + V E+G + + I++ Sbjct: 7 NRKKTPIRKAFGLKVRMRRFEIGITQEELAEKADLHPTYVGSVERGERNIALENIVAIAK 66 Query: 65 VLESPISFFF 74 L Sbjct: 67 GLGCSPKDLM 76 >gi|292490738|ref|YP_003526177.1| hypothetical protein Nhal_0606 [Nitrosococcus halophilus Nc4] gi|291579333|gb|ADE13790.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 127 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R G++Q +L E +G++ + EKG + L+ I++ L I + +S Sbjct: 64 LKVWRTYRGLTQAQLAEQVGLSQSHLVTMEKGERKGTIKVLKRIAQTLRVDIDDLYPLSE 123 Query: 79 TVCS 82 Sbjct: 124 GGGE 127 >gi|302870146|ref|YP_003838783.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315503577|ref|YP_004082464.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302573005|gb|ADL49207.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410196|gb|ADU08313.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 216 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K +P+ VG IR R +S +L E G++ + + E+G+ + A LQ Sbjct: 1 MATSKDLPD-----VGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQ 55 Query: 61 HISEVLESP 69 ++ L Sbjct: 56 QLASALRVS 64 >gi|238059739|ref|ZP_04604448.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881550|gb|EEP70378.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 206 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 6/94 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R ++ L + GI+ + + E G+ R +L ++ + Sbjct: 20 VGPRLKQLRQRREITLADLADETGISTSTLSRLEAGLRRPTLEQLLPLARAYGVSLDELV 79 Query: 75 DVSPTVCSDIS------SEENNVMDFISTPDGLQ 102 D T I+ + + ++ P G+Q Sbjct: 80 DAPATGNPRINLRPIACGDGSTILPLTRRPGGIQ 113 >gi|255035160|ref|YP_003085781.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254947916|gb|ACT92616.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 189 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I+ R G+SQE L E I + +Q+ E G L+ +++VL+ + Sbjct: 6 ISEQIKTLRRAKGLSQENLAESARINLRTLQRIEAGDTIPRGETLRLLAQVLDVRVESL- 64 Query: 75 DVSPTVCSDIS 85 +PT+ D + Sbjct: 65 --TPTLAEDTA 73 >gi|255305199|ref|ZP_05349371.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] Length = 67 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R + ++Q++L + ++ + + + E+G+ G Q I+++L I F Sbjct: 4 SNLKYYRELNKLTQKQLALEVNVSKEYISQIERGIKNPGFFTAQKIAKILGITIDELF 61 >gi|160933365|ref|ZP_02080753.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] gi|156867242|gb|EDO60614.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] Length = 194 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G I+ R ++Q +L E L ++ + + K+E G S L+ ++ L+ I Sbjct: 7 GSTIKSLREKQRLTQSQLAEKLCVSDKTISKWETGRGFPDISLLKPLACALQVSI 61 >gi|153009649|ref|YP_001370864.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] gi|151561537|gb|ABS15035.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] Length = 243 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 8/89 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP- 69 + + +G +R R G+ + + G++ V +E+G N + LQ ++ LE Sbjct: 18 IALKIGTALRTARKQRGLVMRDIAQAAGVSTGAVGNWERGANVMSMENLQAVASYLEIDP 77 Query: 70 -------ISFFFDVSPTVCSDISSEENNV 91 + F + P ++I S+ ++ Sbjct: 78 IALSKGNVKFLSETQPVSDAEIISDAGHI 106 >gi|126697864|ref|YP_001086761.1| DNA-binding protein [Clostridium difficile 630] gi|255099463|ref|ZP_05328440.1| DNA-binding protein [Clostridium difficile QCD-63q42] gi|255305320|ref|ZP_05349492.1| DNA-binding protein [Clostridium difficile ATCC 43255] gi|115249301|emb|CAJ67114.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 364 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+ K + L+R G++Q++L +G++ V K+E G + + L ++ + Sbjct: 4 LNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSYPDITFLPQLATYFNITVD 62 >gi|94992470|ref|YP_600569.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096] gi|94545978|gb|ABF36025.1| phage transcriptional repressor [Streptococcus pyogenes MGAS2096] Length = 157 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ G++Q +LG L + + +EKG N L + + +F Sbjct: 4 GHQLKTVRLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYF 61 >gi|94988646|ref|YP_596747.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94542154|gb|ABF32203.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] Length = 232 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ G++Q +LG L + + +EKG N L + + +F Sbjct: 4 GHQLKTVRLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDYF 61 >gi|14591561|ref|NP_143643.1| hypothetical protein PH1808 [Pyrococcus horikoshii OT3] gi|3258244|dbj|BAA30927.1| 380aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 380 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R G S +L LGI+ + +Q+YEKG + V + EV + P+ D Sbjct: 193 GKKLKALREEHGYSITELAGILGISRKSLQRYEKGESVVSLEVALRLEEVFDEPLVKPID 252 Query: 76 VSPTVCSDI--SSEENNVMDFISTPDGLQLNR 105 V D+ +SE +N+++ + + R Sbjct: 253 VLRARLKDVTLTSEPDNILE----KEVFEKLR 280 >gi|83945188|ref|ZP_00957537.1| transcriptional regulator, XRE family protein [Oceanicaulis alexandrii HTCC2633] gi|83851358|gb|EAP89214.1| transcriptional regulator, XRE family protein [Oceanicaulis alexandrii HTCC2633] Length = 467 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 8/120 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R LG +Q + E L ++ + E+ V A L ++E + + F Sbjct: 11 GARLRRLRKELGQTQAQFAESLNVSPSYLNLLERNQRPVTARVLLSLAEAFDVDVRAFAA 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E D + L R ++ D R ++ + YR Sbjct: 71 ESDRQLLADLKEAA--ADPVLKSTDLD-ARDVQELADAHPRA-----AEALAKLHQAYRE 122 >gi|296393324|ref|YP_003658208.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180471|gb|ADG97377.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 88 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Query: 11 VDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+ V G ++ R+ G S L GI + +YE L I+ L+ P Sbjct: 10 IDLRVLGHELQRARVAKGYSLTDLVSHTGIAKATLHRYEMAQTNHTIRHLVKIARALDVP 69 Query: 70 ISFFFDVSPTVCSD 83 +S V D Sbjct: 70 LSRLVSVLDEPPQD 83 >gi|256964305|ref|ZP_05568476.1| cro/CI family transcriptional regulator [Enterococcus faecalis HIP11704] gi|307271874|ref|ZP_07553142.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|256954801|gb|EEU71433.1| cro/CI family transcriptional regulator [Enterococcus faecalis HIP11704] gi|306511380|gb|EFM80382.1| helix-turn-helix protein [Enterococcus faecalis TX0855] Length = 156 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|251790395|ref|YP_003005116.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247539016|gb|ACT07637.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R +Q+ + +G+ Q KYE G++ A +L +SE+ + I Sbjct: 11 GQRLKALRNQQRRTQKDIAARIGVQLSQYNKYESGMHIPPADKLIQLSELFSTTIDHLLR 70 Query: 76 VSPTVCSDIS 85 S + IS Sbjct: 71 GSHDELAPIS 80 >gi|225569157|ref|ZP_03778182.1| hypothetical protein CLOHYLEM_05237 [Clostridium hylemonae DSM 15053] gi|225571912|ref|ZP_03780782.1| hypothetical protein CLOHYLEM_07886 [Clostridium hylemonae DSM 15053] gi|225159432|gb|EEG72051.1| hypothetical protein CLOHYLEM_07886 [Clostridium hylemonae DSM 15053] gi|225161956|gb|EEG74575.1| hypothetical protein CLOHYLEM_05237 [Clostridium hylemonae DSM 15053] Length = 68 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R +SQE+L +G+T Q + E+ I+ I FD S Sbjct: 4 RIQELRKAHKLSQEELAMAVGVTRQTIISLEREKYTASLVLAYKIARFFGVMIEDVFDFS 63 Query: 78 P 78 Sbjct: 64 D 64 >gi|239820608|ref|YP_002947793.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805461|gb|ACS22527.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 81 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + K +P + +G I+ R G+SQE+L + + E+G+ G + Sbjct: 3 IASPKHALDPALLALGTAIKALRKTHGISQEELAHRSHVDRSYMSSIERGMQNPGVMTVV 62 Query: 61 HISEVLESPIS 71 I+ L ++ Sbjct: 63 QIAAGLGVSVA 73 >gi|148807441|gb|ABR13513.1| predicted transcriptional regulator [Pseudomonas aeruginosa] Length = 73 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+RIR++R +SQ+ L I V + E+G + +L I+ VL Sbjct: 8 LGERIRVQRKACRISQDALALACNIDRSYVGRIERGEVNITVEKLYRIASVLACDP 63 >gi|134097736|ref|YP_001103397.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006304|ref|ZP_06564277.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910359|emb|CAM00472.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 399 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 6/96 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPI--- 70 +G+RIR+ R G+SQ++L +G + + + E+G+ V S L ++ VL++ + Sbjct: 7 IGERIRIYRQRRGLSQKELAHLVGRSESWLSQVERGIRSVDRLSVLVDVARVLKTDVETL 66 Query: 71 -SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + +P ++ E+ + +S GL L+R Sbjct: 67 AGYRMAYAPNGQPELEGLED-IRQAMSAYAGLGLSR 101 >gi|332799793|ref|YP_004461292.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332697528|gb|AEE91985.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 127 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 41/101 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R + G++Q + + GI+ + E A+ L + L I + Sbjct: 5 KTIGERIKYARKLKGLTQNDIYKLTGISSGNLSDIENNKVLPSANALISLKRELGVSIDW 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 V D ++ +P+ + + + ++DDV Sbjct: 65 ILTGEADVAFDKKQNKSPSDIGKLSPNEIDILLKYRKLDDV 105 >gi|312977307|ref|ZP_07789055.1| putative Ans operon transcriptional repressor [Lactobacillus crispatus CTV-05] gi|310895738|gb|EFQ44804.1| putative Ans operon transcriptional repressor [Lactobacillus crispatus CTV-05] Length = 111 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R +G S+ KL + +G+ +E G+ + ++ I E L D+ Sbjct: 6 SKLKYERERMGWSKTKLAKYVGVGLSTYANWEYGIAEPDIATIKKICEALGISSDVLLDL 65 Query: 77 SPTVCSDISSEENNVMDFISTPDG-------LQLNR 105 S + +S+ + ++D + DG +L R Sbjct: 66 SVQNAASSTSDLDEMLDDARSFDGKLLDEHDRELVR 101 >gi|294992409|gb|ADF57341.1| transcriptional regulator [Roseburia inulinivorans DSM 16841] Length = 142 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 22/129 (17%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R + +Q+ + E LG+ Q YE G A ++ + + + Sbjct: 8 QKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNISVDDLLHL 67 Query: 77 ----------SPTVCSDISSEENNVMDFISTPD-----------GLQLNRYFIQIDDVKV 115 + S++ + ++F + P +L YF +I D Sbjct: 68 TIDIDREESYDAPAPTQASTDLSEFLEFFNDPSNKKKYMFNTNLERELLFYFDKIYDED- 126 Query: 116 RQKIIELVR 124 +++IIE + Sbjct: 127 KKEIIEFTK 135 >gi|296393462|ref|YP_003658346.1| hypothetical protein Srot_1042 [Segniliparus rotundus DSM 44985] gi|296180609|gb|ADG97515.1| helix-turn-helix domain protein [Segniliparus rotundus DSM 44985] Length = 188 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGEC-----LGITFQQVQKYEKGVNRVGASRLQHIS 63 + D VG+RI+ R GMSQ L + L + Q + + E+G + S + Sbjct: 12 DDFDALVGRRIKALRTACGMSQTALVDELAQRGLNLPQQTIVRIEQGARSLKFSEATAFA 71 Query: 64 EVLESPI 70 L P+ Sbjct: 72 SALRVPL 78 >gi|295101547|emb|CBK99092.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 102 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + + R +Q+++ + LGI+ Q YE G L + E I + Sbjct: 2 ENLTIIRKESHATQQEVADYLGISRQAYGNYESGKREPDYETLLKLGEYFNCSIDYLLGS 61 Query: 77 SPTVCSDISSE-ENNVMD 93 S V + SE E N+++ Sbjct: 62 SRGVRYPLLSEFERNLLE 79 >gi|291541572|emb|CBL14682.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 229 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++R R L ++ ++ E LGI++ YEK + L +++ + + + Sbjct: 2 LGEKLRELRTELNLNMKQASEKLGISYTTYVGYEKNEREPNSETLIKLADFYKCSVDYL 60 >gi|302873056|ref|YP_003841689.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307688788|ref|ZP_07631234.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302575913|gb|ADL49925.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 67 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R+ G++QE+L + + +T Q + E G I L ++ F Sbjct: 4 NKIKTARVEKGITQEELADMIKVTRQTISLIESGKYNPTLKLCISICLALGKTLNDLF 61 >gi|254502300|ref|ZP_05114451.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438371|gb|EEE45050.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 100 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N+G +R R G++ +L E LG + + + E+G++++ + + ++ V + P S Sbjct: 2 ANLGADLRALRKTKGLTLTELAERLGKSVGWLSQIERGISKLSSEDIDRMAGVFDVPPS 60 >gi|295836564|ref|ZP_06823497.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197697308|gb|EDY44241.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 156 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 14/81 (17%) Query: 13 INVGKRIRLRRMILGMSQEKLG-----------ECLGITFQQVQKYEKGVNRVGASRLQH 61 +N+G+RIR RR+ LG SQE+L E LG Q++ +YE G R L Sbjct: 1 MNIGERIRDRRLQLGWSQERLAREACRVAGAGPEKLG--RQEIYRYETGR-RTPRDWLAP 57 Query: 62 ISEVLESPISFFFDVSPTVCS 82 I++ L + P S Sbjct: 58 IAQALGLSVQALSGGQPDADS 78 >gi|152987569|ref|YP_001349079.1| DNA-binding protein [Pseudomonas aeruginosa PA7] gi|150962727|gb|ABR84752.1| DNA-binding protein [Pseudomonas aeruginosa PA7] Length = 258 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 4/105 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R LG+S +L + GI + + E GV L ++ L+ ++ Sbjct: 88 IKRERERLGLSISELAKRAGIAKSTLSQLEAGVGNPSLETLWALAMALDVQVTRLIAQPR 147 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + I ++E + L + V++ + LV Sbjct: 148 SRVQVIRADEGATVASEQAHYAATLL----AVCPAGVQRDLYRLV 188 >gi|116617253|ref|YP_817624.1| XRE-family DNA-binding domain-containing protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096100|gb|ABJ61251.1| XRE-family DNA-binding domain and ATPase component of ABC transporter [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 296 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 30/65 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ + R +SQE + + L ++ Q V K+E+G +L ++++ +++ Sbjct: 8 QLNMLRQKKSLSQEIIAQKLYVSRQSVSKWERGDAEPDIDKLIALADIFGVDLNYLLAGQ 67 Query: 78 PTVCS 82 + Sbjct: 68 QSPEE 72 >gi|186685408|ref|YP_001868604.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467860|gb|ACC83661.1| putative transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 87 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++K + GK +R RR L +SQE+L E + + E+G ++ ++ Sbjct: 2 SEKNELSIKQRFGKAVRRRRRELDLSQEQLAERAELHRTYISNLERGELNPSLETMEKLA 61 Query: 64 EVLESPISFFF 74 L I F Sbjct: 62 NALNISIPAMF 72 >gi|330961956|gb|EGH62216.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 180 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 R+++ R LGM+ E L E GIT + K E+G+N + ++ + F + Sbjct: 4 RLKILRKRLGMTLEVLAEKTGITKSYLSKVERGLNTPSIAAALKLAAAFNVSVEELFTEG 63 Query: 77 SPTVCS 82 +P+ S Sbjct: 64 TPSQAS 69 >gi|326403693|ref|YP_004283775.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050555|dbj|BAJ80893.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 469 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G++Q+KL LGI+ + E V A+ L ++E L+ Sbjct: 6 IGRIVRRLRQEHGLTQQKLASRLGISTSYLNLIEHDQRGVTAALLIKLTETLKV------ 59 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D++ SD E + + + P Sbjct: 60 DLAALSGSDERQVEQALREAFADP 83 >gi|325264752|ref|ZP_08131481.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030044|gb|EGB91330.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 130 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + R M+Q++L + L I+ Q YE G L IS++ + Sbjct: 8 ANLARYRKARHMTQKELAKMLNISRQAYSNYETGKRTPDIDLLLKISQIYNITLD 62 >gi|311894148|dbj|BAJ26556.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 407 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFF 73 +GKR++ +R+ LGM Q L +G T V K E G + AS + ++ L + Sbjct: 8 IGKRVKRQRLRLGMPQADLAAAIGRTQGWVSKVENGKVELDRASIINQLAAALHCHPNDL 67 Query: 74 FD 75 + Sbjct: 68 IE 69 >gi|291549648|emb|CBL25910.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 118 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMRESRKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVL- 60 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTP 98 PIS ++P V + M + S P Sbjct: 61 -PISLDTLINPDVSPEDDGANQMKMLYCSCP 90 >gi|260662347|ref|ZP_05863242.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260553038|gb|EEX25981.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 378 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 ++ L E +G++ Q + +YE+G + G Q I + L+ P++FF + D + Sbjct: 19 LTITSLSEEIGVSKQMISRYERGTAQPGLDVFQQIVKSLQFPVAFFTGENKFDYEDEGT 77 >gi|260844263|ref|YP_003222041.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257759410|dbj|BAI30907.1| predicted transcriptional regulator [Escherichia coli O103:H2 str. 12009] Length = 230 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G RI+ R LG+++ L + + +E G V A ++ ++ L + + Sbjct: 162 NIGARIKSARKKLGLTEADLARMIHTYSDPINDWECGTCEVPADQIVPLASALNCDLMWL 221 Query: 74 FDVSPTVCS 82 Sbjct: 222 LTGKSEAKE 230 Score = 40.6 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 19/114 (16%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDV 76 +R +R G++ +L L + + + ++E G S L ++ VL P+S + Sbjct: 86 NLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLTPLANVLGCDPLSLLSEK 145 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI----IELVRSI 126 + +++ E +V + + +I R+K+ +L R I Sbjct: 146 NSESVIRVNAPEVHVENIGA------------RIKSA--RKKLGLTEADLARMI 185 >gi|302528605|ref|ZP_07280947.1| predicted protein [Streptomyces sp. AA4] gi|302437500|gb|EFL09316.1| predicted protein [Streptomyces sp. AA4] Length = 197 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG I+ R LGM+ +L E G++ + E+GVN + + L I+ LE Sbjct: 8 VRVGAEIKRVRSSLGMTLRELAERCGLSPGFLSLAERGVNSISLTSLFAIAGALEVD 64 >gi|254822427|ref|ZP_05227428.1| transcriptional regulator, XRE family protein [Mycobacterium intracellulare ATCC 13950] Length = 477 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + L ++E + P +F Sbjct: 10 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLPSQYF-- 67 Query: 76 VSPTVCSDISSEENNVM-DFISTPDGL-QLNRYFIQIDD--VKVRQKIIE 121 +P + + S+ V+ + +T + +L I V + +++ + Sbjct: 68 -APESDARLISDLREVLAEAPATAGQVEELVARMPAIGQTLVNLHRRLHD 116 >gi|300361873|ref|ZP_07058050.1| XRE family transcriptional regulator [Lactobacillus gasseri JV-V03] gi|300354492|gb|EFJ70363.1| XRE family transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 129 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISF 72 N+G I+ RR L M+QE L E ++ + K E+ G + +L I++ L++ + Sbjct: 11 NLGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDAIAKALQTSVIT 70 Query: 73 FFDVSPTVCS 82 D S Sbjct: 71 LIDESSKTPE 80 >gi|268591811|ref|ZP_06126032.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312779|gb|EFE53232.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 84 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR +R +S E++ +G+T +++ ++E G + + L + + + F Sbjct: 10 LGIKIRKQRENHKISIERMASLIGVTEEEMSRFETGESCIDVDSLFQFAYLFNVDPASF 68 >gi|183598790|ref|ZP_02960283.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827] gi|188020996|gb|EDU59036.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827] Length = 186 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 17/119 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K + R G+S +L GI + + E G L I L+ P S Sbjct: 11 IAKALVRERQKSGLSLSELSRQAGIAKSTLSQLEAGNGNPSIETLWAICVALDVPFSRLI 70 Query: 75 DVSPTVCS--------DISSEENNVMDFISTPDGLQLNRYFI---------QIDDVKVR 116 + + +S+E N + F+ + R +I + +R Sbjct: 71 EDRHEPVTVIRHGDGIQVSAEHANYLAFLLSAAPANSQRDIYTVVAEPGRDRISEPHMR 129 >gi|88604264|ref|YP_504442.1| XRE family transcriptional regulator [Methanospirillum hungatei JF-1] gi|88189726|gb|ABD42723.1| transcriptional regulator, XRE family [Methanospirillum hungatei JF-1] Length = 67 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +I++ R + M+QE L +G+T Q + EKG ++ I F F Sbjct: 3 NKIKVFRAMHDMTQEDLAREVGVTRQTILAIEKGKYDPSLELAFKMARRFHVTIEEIFVF 62 Query: 75 DVSPT 79 + S Sbjct: 63 EESSP 67 >gi|88706084|ref|ZP_01103792.1| DNA-binding protein [Congregibacter litoralis KT71] gi|88699798|gb|EAQ96909.1| DNA-binding protein [Congregibacter litoralis KT71] Length = 361 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+RL R G+S L + + ++ Q + KYE+ + L +S L+ + + Sbjct: 2 IGERLRLARKKAGLSLRALSDAIDRKVSAQSIGKYERDEVMPPSDVLTAMSGALDVSLEY 61 Query: 73 F 73 Sbjct: 62 L 62 >gi|146277511|ref|YP_001167670.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555752|gb|ABP70365.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 428 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P+ G R+R RR+ LG+ Q L GI+ + E R+G L ++ L+ Sbjct: 2 PMTALTGSRVRERRLQLGLRQADLARSAGISASYLNLIEHNRRRIGDEVLGRLARALKI 60 >gi|118579884|ref|YP_901134.1| molybdate metabolism transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502594|gb|ABK99076.1| transcriptional regulator of molybdate metabolism, XRE family [Pelobacter propionicus DSM 2379] Length = 368 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R G SQ++L E G++ V E G +++V P+ F V Sbjct: 30 IKKFREERGWSQQELAERAGLSRAGVSAIETGKLVPSTVAALALAKVFACPVEELFQVGG 89 Query: 79 TVC 81 Sbjct: 90 QAE 92 >gi|331091961|ref|ZP_08340793.1| hypothetical protein HMPREF9477_01436 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402860|gb|EGG82427.1| hypothetical protein HMPREF9477_01436 [Lachnospiraceae bacterium 2_1_46FAA] Length = 133 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 I +G RIR R SQE L E G++ + + E G + LQ I + L Sbjct: 11 IILGNRIRECRKEREFSQEILAEKSGVSTNTISRIEGGQMAMSVGILQKIVKALGVD 67 >gi|295099191|emb|CBK88280.1| Predicted transcriptional regulator with C-terminal CBS domains [Eubacterium cylindroides T2-87] Length = 464 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R+ G+SQ +L LGI + + E G + I+ L +S + Sbjct: 12 SQLVEARLEQGISQAELARRLGIQRSGINRLESGTQNPTLDMILKIASALGKDVSLELND 71 Query: 77 SPTVCSDISS---EENNVMDFISTPDGL 101 S++ S + +M F GL Sbjct: 72 KEEPMSNVYSLRIYDTELMRFSMEKQGL 99 >gi|255103226|ref|ZP_05332203.1| hypothetical protein CdifQCD-6_20608 [Clostridium difficile QCD-63q42] Length = 149 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R++ R+ G+ Q +L E L ++ + YE A + ++E + Sbjct: 3 GERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYL 60 >gi|226328473|ref|ZP_03803991.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198] gi|225203206|gb|EEG85560.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198] Length = 109 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ VG RI++ R L +++ ++ E LGIT + E G ++ +L IS +L Sbjct: 2 INTRVGNRIKMLRRQLKITENEMSERLGITMLHYSQLEDGHIKITVDQLITISYILGV 59 >gi|168185962|ref|ZP_02620597.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] gi|169295926|gb|EDS78059.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] Length = 107 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 18/113 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G I+ R GMS KL + G++ + E + +L ++E+LE I F Sbjct: 2 LGDNIKAFRKEKGMSLNKLAKSAGMSPSYLSDLENNKSVNPSMEKLNKLAEILEVRIEDF 61 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVR 124 + + E + + +I + R+KI++++ Sbjct: 62 YKEDSDEIDKLEEEMKLL---------------YSKIKNLSKNDRKKILDIIE 99 >gi|168179867|ref|ZP_02614531.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182669352|gb|EDT81328.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 148 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R +SQE + E L ++ Q V K+E ++ + +SE+ + Sbjct: 1 MSLGEKLLYLRKKASLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|94995138|ref|YP_603236.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|94548646|gb|ABF38692.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10750] Length = 68 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R +SQ+ L + +G++ Q + EKG + I VL+ + F Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|73749022|ref|YP_308261.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|289433017|ref|YP_003462890.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660738|emb|CAI83345.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|288946737|gb|ADC74434.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 69 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R I ++QE+L + LGIT Q V E+G I+ + E+PI F Sbjct: 3 NKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFETPIEEIF 60 >gi|73661421|ref|YP_300202.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493936|dbj|BAE17257.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 155 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G +I++ R ++QE+ G L I+ Q V +E L I++ + Sbjct: 1 MNFGTQIKMIRKENQLTQEQFGNQLNISRQTVSTWENNRYLPDIEMLVEIAKTFNLSLDD 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + V + ++ V Sbjct: 61 LILGNSVVKDKLVNDTKFV 79 >gi|315037251|ref|YP_004030819.1| transcriptional regulator, XRE family protein [Lactobacillus amylovorus GRL 1112] gi|312275384|gb|ADQ58024.1| Transcriptional regulator, XRE family protein [Lactobacillus amylovorus GRL 1112] Length = 276 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ +R R+ LG++Q ++ + ++ K E G N++ A RL I + IS Sbjct: 1 MQIGEALRTERIKLGLTQNEMSSDI-VSRSFYAKVEAGKNKIAADRLFRILFLHNIDISE 59 Query: 73 FFDVSPTVCSDISSE-----ENNVMDFISTPDGLQLNRYFIQI 110 F D+ + + E + + S D L Y +I Sbjct: 60 FNDLIQKTYNSDENNLRNDLEEKMAEAFSNKDVDSLTEYCQKI 102 >gi|288560390|ref|YP_003423876.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543100|gb|ADC46984.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 113 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R G+SQ L LGI+ + + E G + S L + + S+ Sbjct: 4 IGQRLQGLRESKGLSQSDLANYLGISQPLLSQIEAGNRNLNLSLLDKLCALYGCTDSY 61 >gi|284802769|ref|YP_003414634.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284995911|ref|YP_003417679.1| transcriptional regulator [Listeria monocytogenes 08-5923] gi|284058331|gb|ADB69272.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284061378|gb|ADB72317.1| transcriptional regulator [Listeria monocytogenes 08-5923] Length = 101 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++++ R +QE + LG++ E G N + ++ E + Sbjct: 3 GDKLKMLRSKTNKTQEDIANILGVSRAAYSHIENGRNEPDMETIVKLANYFEVSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 SD+ + + D ++ + +++ +Y I K Sbjct: 63 RDEIDNSDLLAAH--IDDDLTEDERIEIEKYLKFIRSQK 99 >gi|260887021|ref|ZP_05898284.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|330839199|ref|YP_004413779.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260863083|gb|EEX77583.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|329746963|gb|AEC00320.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 135 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G++I+ R G++Q +L + ++ + EK S L+ I++ + +S Sbjct: 1 MSIGEKIKEARKAAGLTQMELAKKTRLSRSYIGDIEKDRYNPSLSTLELIAKATGTSLS 59 >gi|257057003|ref|YP_003134835.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586875|gb|ACU98008.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 411 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG---VNRVGASRLQHISEVLESPIS 71 +G+R+ R G+SQ L +G + V K E+G VNR+ L ++ L ++ Sbjct: 10 IGERVAFYRRRRGLSQAVLAGLMGKSEDWVSKIERGERQVNRIDV--LVELARQLRVTLN 67 Query: 72 FFFDVSPTVCSDISSEEN--NVMDFISTPDGL 101 P + D ++ V D + +P GL Sbjct: 68 DLL-GEPVLFEDEDDNDDVPAVRDALMSPQGL 98 >gi|254885026|ref|ZP_05257736.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319642730|ref|ZP_07997374.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A] gi|254837819|gb|EET18128.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317385665|gb|EFV66600.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A] Length = 100 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ I R M+Q +L E +G + + E G S I+ L + Sbjct: 40 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASALGLNV 94 >gi|238923321|ref|YP_002936836.1| hypothetical protein EUBREC_0938 [Eubacterium rectale ATCC 33656] gi|238874995|gb|ACR74702.1| Hypothetical protein EUBREC_0938 [Eubacterium rectale ATCC 33656] Length = 112 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 38/80 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++GK IR R+ ++QE+L E + + + E+G +++ S L I L+ + Sbjct: 8 KHIGKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKIDANE 67 Query: 73 FFDVSPTVCSDISSEENNVM 92 F + T S+ +N + Sbjct: 68 LFWDTDTHTSESQQLDNQIA 87 >gi|218896313|ref|YP_002444724.1| transcriptional regulator SinR [Bacillus cereus G9842] gi|218541453|gb|ACK93847.1| transcriptional regulator SinR [Bacillus cereus G9842] Length = 107 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G+RI+ R+ G+S +L E G+ + E+ + + + I+ VL+ P+ Sbjct: 2 IGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPFIQFLEKIAAVLQIPVDTL 61 Query: 74 FDVSPTVCSDISSE 87 T +++ SE Sbjct: 62 LHDETTKATNLDSE 75 >gi|154498983|ref|ZP_02037361.1| hypothetical protein BACCAP_02975 [Bacteroides capillosus ATCC 29799] gi|257440105|ref|ZP_05615860.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|261366750|ref|ZP_05979633.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|332655489|ref|ZP_08421223.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|150271823|gb|EDM99049.1| hypothetical protein BACCAP_02975 [Bacteroides capillosus ATCC 29799] gi|257197457|gb|EEU95741.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|282571577|gb|EFB77112.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|295101293|emb|CBK98838.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] gi|332515590|gb|EGJ45205.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 142 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 + G++ + R ++Q+++ + LGI + + +YE G++ I+E + ++ Sbjct: 1 MTFGEKFKAEREKRKLTQQEVADALGINRRMITRYENGISFPRTKDAYRKIAEYFKVDVN 60 Query: 72 FFFDVSPTVCSDISSE 87 + S + Sbjct: 61 YLLTEDEEFVVQASEQ 76 >gi|186475018|ref|YP_001856488.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184191477|gb|ACC69442.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 135 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G + R GM Q L E +G+ + EKG + + +L+ ++ L+ P S Sbjct: 14 LGAVLGQIRSAAGMKQSDLAEAVGVGPSTWSRIEKGESSLSTDQLKLAADALKVPPSRIL 73 Query: 75 D 75 + Sbjct: 74 E 74 >gi|304439386|ref|ZP_07399298.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372168|gb|EFM25762.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 67 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R G+SQ KL E +G+ + + YE I +VL ++ F Sbjct: 7 NKIAQFRKEKGLSQHKLAEAVGLKRRSIMAYESNTISPTLETAYKICKVLGKDMTEVF 64 >gi|289673453|ref|ZP_06494343.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 149 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%) Query: 8 PNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+P ++ +G +I+ +R + + GI+ + K E L + + Sbjct: 7 PHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCD 66 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 VL P+S F S + +GL++ R Sbjct: 67 VLGMPMSKLFSQYDQQGSSAL--------LVKADEGLEVVR 99 >gi|283479863|emb|CAY75779.1| HTH-type transcriptional regulator immR [Erwinia pyrifoliae DSM 12163] gi|283479872|emb|CAY75788.1| HTH-type transcriptional regulator immR [Erwinia pyrifoliae DSM 12163] Length = 167 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 8/112 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FF 74 GKR+ R ++Q +L L I + + ++E+G + + +++ LE + Sbjct: 52 GKRLAALRKERQLTQIELANLLDIQPRMLGRWEQGQVKPQFDYIIKLAQFLEVSTDYMLL 111 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL-----QLNRYF--IQIDDVKVRQKI 119 T + + + DGL + +F + I KVRQ I Sbjct: 112 GEEDTAAPVFDIKNKRLKELCKQVDGLKTEDQDMICHFLDMAITQEKVRQAI 163 >gi|254555955|ref|YP_003062372.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308179947|ref|YP_003924075.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044882|gb|ACT61675.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308045438|gb|ADN97981.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 183 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 I +G +I+ +R SQ+ + E L ++ Q + K+E G + L +S++ Sbjct: 3 IVIGSKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFAVS 59 >gi|315499432|ref|YP_004088235.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315417444|gb|ADU14084.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 93 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLES 68 V +G + R +SQE+L + + Q + E G A L I+ L Sbjct: 2 DVQALIGWNVSRLRKKAELSQEELALRVEVVAQTYISNLEAGKCNPTAVTLYLIARALSV 61 Query: 69 PISFFF--DVSPTVCSDIS 85 +S F D P ++ Sbjct: 62 NVSELFATDGVPLTLTEGP 80 >gi|229546719|ref|ZP_04435444.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256854280|ref|ZP_05559644.1| transcriptional regulator [Enterococcus faecalis T8] gi|307275291|ref|ZP_07556434.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290889|ref|ZP_07570779.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|229308068|gb|EEN74055.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256709840|gb|EEU24884.1| transcriptional regulator [Enterococcus faecalis T8] gi|306497959|gb|EFM67486.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306507925|gb|EFM77052.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|315029743|gb|EFT41675.1| helix-turn-helix protein [Enterococcus faecalis TX4000] Length = 232 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|229153416|ref|ZP_04281594.1| Transcription regulator, probable-related protein [Bacillus cereus m1550] gi|228630020|gb|EEK86671.1| Transcription regulator, probable-related protein [Bacillus cereus m1550] Length = 68 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ LE+ ++ F Sbjct: 7 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALETDLNSLF 64 >gi|297195701|ref|ZP_06913099.1| transcriptional regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718957|gb|EDY62865.1| transcriptional regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 201 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 25/75 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ +++ L I+ D Sbjct: 24 RNLKHWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 83 Query: 77 SPTVCSDISSEENNV 91 I E V Sbjct: 84 EQGAQVRIVPPEQAV 98 >gi|110803374|ref|YP_699815.1| LacI family transcription regulator [Clostridium perfringens SM101] gi|110683875|gb|ABG87245.1| DNA-binding protein [Clostridium perfringens SM101] Length = 223 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+RI+ R GM+Q+ L + LG+ + V + E G + S + +S+VL + ++ Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLN 60 >gi|42519281|ref|NP_965211.1| hypothetical protein LJ1411 [Lactobacillus johnsonii NCC 533] gi|41583569|gb|AAS09177.1| hypothetical protein LJ_1411 [Lactobacillus johnsonii NCC 533] Length = 129 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISF 72 N+G I+ RR L M+QE L E ++ + K E+ G + +L I++ L++ + Sbjct: 11 NLGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDAIAKALQTSVIT 70 Query: 73 FFDVSPTVCS 82 D S Sbjct: 71 LIDESSKTPE 80 >gi|54308498|ref|YP_129518.1| hypothetical protein PBPRA1305 [Photobacterium profundum SS9] gi|46912927|emb|CAG19716.1| hypothetical helix-turn-helix XRE-family like proteins [Photobacterium profundum SS9] Length = 104 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR+ R ++Q ++ + LG+ Q E G A L I+++L++ F Sbjct: 13 QRIRVARECRELTQVRMAKYLGLARQTYLDIETGKTEPKAGTLLAIAQILKTDYRFLLTG 72 Query: 77 SP 78 Sbjct: 73 EK 74 >gi|146280227|ref|YP_001170384.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] gi|145558468|gb|ABP73079.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] Length = 652 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 4/79 (5%) Query: 7 IPNPVDIN----VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +P+ V+++ +G I R G++ + L E ++ + E+G G L + Sbjct: 1 MPHSVEVDRAARIGANIARARQRRGLTLDGLAELSCVSRATISALERGHGNPGVQTLWSL 60 Query: 63 SEVLESPISFFFDVSPTVC 81 ++ L + P Sbjct: 61 ADALGLNFAALLGDEPASA 79 >gi|332976056|gb|EGK12926.1| DNA-binding protein [Desmospora sp. 8437] Length = 179 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 32/84 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V IR R G + + L E ++ + + E+G + + + L+ I++ PI FF Sbjct: 4 VCNEIRRLRQSRGYTLKDLSERTELSVSFLSQVERGTSSLAITSLKKIADAFGVPIRQFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + EE + Sbjct: 64 LAENNFNYMLKKEEQKPFRLEGSS 87 >gi|317475652|ref|ZP_07934913.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908222|gb|EFV29915.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 104 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G +R RR L ++Q++L + +G + + EKG + S I+ L Sbjct: 44 GDILRERRKELKLTQKQLAQKIGKEQSYIARVEKGEADIQLSSFFRIARALGI 96 >gi|317473295|ref|ZP_07932590.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] gi|316899131|gb|EFV21150.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] Length = 180 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ V K I+ R +S E L + G++ + + E+G S L IS ++ P Sbjct: 1 MNLIVAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVP 59 >gi|315645456|ref|ZP_07898580.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315278934|gb|EFU42244.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 65 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ +SQE+L + +G++ Q + E G S I + L ++ F Sbjct: 5 KLKMARVEKDLSQEELAQIVGVSRQTIGLIELGKYNPSLSLCVAICKALSRTLNDLF 61 >gi|307130384|ref|YP_003882400.1| transcriptional regulator [Dickeya dadantii 3937] gi|306527913|gb|ADM97843.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 188 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + RIR R G S L E ++ + K E+G + A+ L +S + Sbjct: 7 MDKRIAARIRSERENRGWSLSDLAEKASVSRAMIHKIERGESSPTANLLGKLSGAFGLSM 66 Query: 71 S 71 S Sbjct: 67 S 67 >gi|293401078|ref|ZP_06645223.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306104|gb|EFE47348.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 177 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 39/81 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R+ ++ E+L +T + + E+ + S L+ I E L + ++ Sbjct: 1 MDIGAKIKALRIQNDLTLEELASRSELTKGFLSQVERNLTSPSVSTLEDILEALGTDLAS 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S S +++ + + Sbjct: 61 FFKESKQTKVVFSKQDHFIDE 81 >gi|289422564|ref|ZP_06424407.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] gi|289157136|gb|EFD05758.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] Length = 69 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES---PISFF 73 R++ R LG+SQ L +G++ + E G A ++ LE I +F Sbjct: 9 NRLKDIRKELGLSQTDLANMVGVSRNTISSIETGQFNPTAKLALILAIALEKKFEDIFYF 68 >gi|212712022|ref|ZP_03320150.1| hypothetical protein PROVALCAL_03098 [Providencia alcalifaciens DSM 30120] gi|212685544|gb|EEB45072.1| hypothetical protein PROVALCAL_03098 [Providencia alcalifaciens DSM 30120] Length = 78 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N++ PN ++++GK I+ R+ M+ ++ + + ++ + YE+G + L +S Sbjct: 2 NERKPN--NLSLGKFIQKERLARQMTTTEIAQAISVSERVYSHYEEGSVSIYIEHLVALS 59 Query: 64 EVLESPISFFFDV 76 +L+ + FFD Sbjct: 60 SILKIDLQLFFDA 72 >gi|170747509|ref|YP_001753769.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654031|gb|ACB23086.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 186 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I+VG R+R R G+SQ L + G+T + E L+ I + PI Sbjct: 3 IDVGARLRFVRARHGLSQRTLAKRAGVTNSAISLIEANRVNPSVGALKRILD--GVPIGM 60 Query: 73 --FFDVSPTVCSDISSEENNVMDF 94 FF + P + + Sbjct: 61 AEFFALEPEPERKAFFAAEELTEI 84 >gi|167746155|ref|ZP_02418282.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] gi|167654670|gb|EDR98799.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] Length = 180 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ V K I+ R +S E L + G++ + + E+G S L IS ++ P Sbjct: 1 MNLIVAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVP 59 >gi|167463777|ref|ZP_02328866.1| prophage Lp1 protein 8 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 123 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R+ G SQE+ + +G+ + YE G N + L I+E + + + Sbjct: 12 RLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFNTSTDYLLGKT 71 Query: 78 PTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + +++ +F G++L +D K +++I+L+RS++ +K+ Sbjct: 72 DNPESLKVRDLDAISIDDLQNFKIEYRGVELT------EDEK--RQVIKLLRSVLELKKE 123 >gi|162450781|ref|YP_001613148.1| nitrogen regulatory IIA protein [Sorangium cellulosum 'So ce 56'] gi|161161363|emb|CAN92668.1| nitrogen regulatory IIA protein [Sorangium cellulosum 'So ce 56'] Length = 289 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPISFFF 74 G +RL R+ G+S L +G++ + + E G + + RL I+ L+ P + Sbjct: 20 GATLRLLRVEAGLSLRALAHRIGVSSAYLSRVEHGHDAIPTPDRLTAIAGALDLPPAVLL 79 Query: 75 DVS 77 ++ Sbjct: 80 ELG 82 >gi|150403502|ref|YP_001330796.1| helix-turn-helix domain-containing protein [Methanococcus maripaludis C7] gi|150034532|gb|ABR66645.1| helix-turn-helix domain protein [Methanococcus maripaludis C7] Length = 192 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG +I+ R MS E+L + + ++ E G + L I+ L + F Sbjct: 6 HVGIKIKQTRERQNMSIEELAKASNSSVNLIESLENGDLVPSLTPLFKIARALGVRLGTF 65 Query: 74 FDVSPTVCS 82 D +P Sbjct: 66 LDDAPQSGP 74 >gi|160895525|ref|YP_001561107.1| anaerobic benzoate catabolism transcriptional regulator [Delftia acidovorans SPH-1] gi|160361109|gb|ABX32722.1| transcriptional regulator, XRE family with shikimate kinase activity [Delftia acidovorans SPH-1] Length = 304 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V +G+R+R R GM++ L ++ + + E G V L HI++ L+ Sbjct: 23 NQVLQALGERVRSLRSRRGMTRRALAAAADVSERHLANLEYGTGNVSVLVLHHIAQALQC 82 Query: 69 PIS 71 ++ Sbjct: 83 SMA 85 >gi|157370308|ref|YP_001478297.1| DNA-binding transcriptional repressor PuuR [Serratia proteamaculans 568] gi|157322072|gb|ABV41169.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 185 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R LG+SQ + E G+T + E+ S LQ + V +S FF Sbjct: 9 GKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSAFF- 67 Query: 76 VSPTVCSDISSEENNVMD 93 +I E V+D Sbjct: 68 ----AEPEIPDEPQIVID 81 >gi|91778552|ref|YP_553760.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691212|gb|ABE34410.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 91 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G +R R G SQE+L E G+ V + E+G + ++ + PI Sbjct: 6 REFGATVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEH 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 S +D S Sbjct: 66 LLTPSSDASGIAVLARAAFVDPPSAS 91 >gi|28377157|ref|NP_784049.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300766897|ref|ZP_07076810.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28269988|emb|CAD62888.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300495435|gb|EFK30590.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 67 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R++ G SQ++L GIT Q + EKG ++ L + F V P Sbjct: 7 VKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHALNQTLDTVFWVEP 66 Query: 79 T 79 + Sbjct: 67 S 67 >gi|326693523|ref|ZP_08230528.1| XRE family transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 183 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R + ++Q L L ++ + + +E G + IS+ L + F Sbjct: 7 IKEKRKKMSLTQMDLANKLLVSNKTISNWETGKTLPDIENIILISKYLNLSLDDLFLGDE 66 Query: 79 TVCSDISSEENN 90 T+ + + Sbjct: 67 TMVEKLRENQQE 78 >gi|293607057|ref|ZP_06689400.1| DNA-binding/shikimate kinase domain protein [Achromobacter piechaudii ATCC 43553] gi|292814547|gb|EFF73685.1| DNA-binding/shikimate kinase domain protein [Achromobacter piechaudii ATCC 43553] Length = 302 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 10/97 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R I GM+++ L + G++ + + E GV L I+ Sbjct: 19 VALGERVRRLRAIRGMTRKSLSQVTGVSERHLANLEHGVGNASILVLLQIARAFNC---- 74 Query: 73 FFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY 106 + D+++E + + + +S L R Sbjct: 75 ---ALAELVGDVTTESPDWLLIRELLSGRTESDLQRA 108 >gi|290962183|ref|YP_003493365.1| regulatory protein [Streptomyces scabiei 87.22] gi|260651709|emb|CBG74834.1| putative regulatory protein [Streptomyces scabiei 87.22] Length = 198 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R + L E GI+ + + E G+ + L I+ + P+ Sbjct: 18 VGPRLRRIRKEREATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELI 77 Query: 75 DVSPTVCSDISSEE 88 P + S+ Sbjct: 78 GEPPVGDPRVRSKP 91 >gi|253575334|ref|ZP_04852672.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845331|gb|EES73341.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISF 72 ++G+RI+ R G S +L E + + E+ + + S ++ I++ L I+ Sbjct: 4 HIGERIQKLRQDRGYSLSELAEKADVAKSYLSNVERNIQSNPSISFIEKIADALNVSINL 63 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + E + ++ Sbjct: 64 LLYGDRPAPELLDPEWSELVQ 84 >gi|237746811|ref|ZP_04577291.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229378162|gb|EEO28253.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 118 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K + +GK I +RM G++QE + E L I ++ V + E+G RL ++ Sbjct: 2 QKNKEKTIAQAMGKAIAQKRMEKGLTQENVAEKLNIGYEAVSRIERGTVIPNIVRLVELA 61 Query: 64 EVLESPIS 71 ++ E I Sbjct: 62 DIFECGID 69 >gi|225017527|ref|ZP_03706719.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum DSM 5476] gi|224949677|gb|EEG30886.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum DSM 5476] Length = 83 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR R ++Q +L L ++ Q YE+GV + L + + + + Sbjct: 4 NRIRDLREDHDLTQAELARMLSVSRQAYSGYERGVRSIPFEILCQFALFYGTSLDYL 60 >gi|188579020|ref|YP_001915949.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523472|gb|ACD61417.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 62 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 1 MRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 56 >gi|311110859|ref|ZP_07712256.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri MV-22] gi|311066013|gb|EFQ46353.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri MV-22] Length = 112 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISF 72 N+G I+ RR L M+QE L E ++ + K E+ G + +L I++ L++ + Sbjct: 11 NLGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDTIAKALQTSVIT 70 Query: 73 FFDVSPTVCS 82 D S Sbjct: 71 LIDESSKTPE 80 >gi|256849634|ref|ZP_05555066.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|262046302|ref|ZP_06019265.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] gi|256713750|gb|EEU28739.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|260573632|gb|EEX30189.1| conserved hypothetical protein [Lactobacillus crispatus MV-3A-US] Length = 254 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 18 RIRLRRMILGMSQEKLGECL------GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 RI+ R + +Q +L + L I+ + KYE GVN + ++ L Sbjct: 5 RIKEIREKMDKTQAQLSDYLSNEKGLNISRGTIAKYESGVNYPSPQTMSKLAHALNVSEY 64 Query: 72 FF 73 + Sbjct: 65 YL 66 >gi|258653000|ref|YP_003202156.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556225|gb|ACV79167.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 73 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 9/81 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV ++ N IR R G M+Q L + +G+T Q V E+G Sbjct: 1 MVKPTRVTNS--------IRALRFAAGEMTQADLADRIGVTRQTVIAIEQGRYSPSLEMA 52 Query: 60 QHISEVLESPISFFFDVSPTV 80 I+ V + F P Sbjct: 53 FRIAHVFGVGLDAVFQYQPDS 73 >gi|221201483|ref|ZP_03574522.1| repressor protein CI [Burkholderia multivorans CGD2M] gi|221207961|ref|ZP_03580967.1| repressor protein CI [Burkholderia multivorans CGD2] gi|221172146|gb|EEE04587.1| repressor protein CI [Burkholderia multivorans CGD2] gi|221178751|gb|EEE11159.1| repressor protein CI [Burkholderia multivorans CGD2M] Length = 132 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+R R ++Q++L + +G+ + + E A I++VL + + Sbjct: 7 GKRLRAARKGARLTQKQLADKVGLKQATISELENDEYDGSAKTA-AIADVLGVNALWLAE 65 Query: 76 VSPTVC 81 Sbjct: 66 GKGEAE 71 >gi|209808836|ref|YP_002274407.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257883427|ref|ZP_05663080.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257892129|ref|ZP_05671782.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257895015|ref|ZP_05674668.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|209528673|dbj|BAG74974.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257819085|gb|EEV46413.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257828489|gb|EEV55115.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257831394|gb|EEV58001.1| transcriptional regulator [Enterococcus faecium 1,231,408] Length = 298 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 13/116 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT--FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR R ++ E+ G+ T + +E G N + R++ I+E+ + Sbjct: 167 IGQRIRKIRKKENITLEEFGKLFSPTADKAVISNWENGKNLPNSERIKKIAEIGGVSELY 226 Query: 73 FFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFI-------QIDDVKVRQ 117 + ++ +S + ++ +S + ++ F +IDD R+ Sbjct: 227 LMTGVDSSVAESMYFLSEVALDALERLSIEEVNRIIESFAGYLNVISKIDDPDKRE 282 Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G RI+ R G + LG+ + + + +EKG N RL+ I+ + + + + Sbjct: 9 GNRIKQIREKHGYTMADLGKLVDANSPSTINNWEKGNNLPNRKRLEKIALLGGTSVEW 66 >gi|188588525|ref|YP_001920110.1| helix-turn-helix domain protein [Clostridium botulinum E3 str. Alaska E43] gi|188498806|gb|ACD51942.1| helix-turn-helix domain protein [Clostridium botulinum E3 str. Alaska E43] Length = 432 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L + IT Q+ E G + L++++ L I Sbjct: 6 LGEKIKTRRKELNMTLKDLAKN-RITPGQISLIESGRSNPSMDLLEYLAATLNISIEHLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + IS V + + + + +I Sbjct: 65 ESEESQAEKISIYYEQVAESYILLESYDIAQKYI 98 >gi|167567607|ref|ZP_02360523.1| DNA-binding protein [Burkholderia oklahomensis EO147] Length = 188 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLFSDS 63 >gi|220924825|ref|YP_002500127.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949432|gb|ACL59824.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 218 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 35 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSI 91 >gi|170736645|ref|YP_001777905.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818833|gb|ACA93415.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 108 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ ++QE+LG GI +V +YEKG + Q ++ L P SF Sbjct: 13 KRLKQARLRTDLTQEQLGILAGIDEFSASARVNQYEKGKHAPTVQTSQRLARALLIPTSF 72 Query: 73 FFDVSPTVCS 82 ++ + + Sbjct: 73 LYEEDDLLAN 82 >gi|15891606|ref|NP_357278.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] gi|15160044|gb|AAK90063.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] Length = 182 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L G+T + E + L+ I + PI Sbjct: 1 MSVDLGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P + +++ Sbjct: 59 GLAEFFAFEPETSRKAFYRADELVEI 84 >gi|325453355|gb|ADZ13636.1| putative transcriptional regulator [Cronobacter phage ENT47670] Length = 229 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R M+ +L + + + E+G+ + +Q I+E L P++ Sbjct: 1 MKIGEKIRQIRKANQMTLSELALRVESDVGNLSRLERGMQGYSDTLIQKIAEALGVPVAE 60 Query: 73 FFDVSPTVCS 82 F + + Sbjct: 61 LFSSNEASDT 70 >gi|315222118|ref|ZP_07864027.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188744|gb|EFU22450.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 62 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R LG+SQ +L + G++ Q + E +++ L++ ++ F Sbjct: 4 VREFRNSLGLSQLELAKKTGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLF 59 >gi|302520593|ref|ZP_07272935.1| predicted protein [Streptomyces sp. SPB78] gi|302429488|gb|EFL01304.1| predicted protein [Streptomyces sp. SPB78] Length = 211 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG RIR R +S L G+ + E G L ++ L P++ Sbjct: 45 VGARIRELREARALSLSALARRSGLGKATLSGLEAGTRNPTLETLYAVTTALGVPLT 101 >gi|300717762|ref|YP_003742565.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661] gi|299063598|emb|CAX60718.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661] Length = 69 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GKR+ L R ++QE L E + + E G S + +++ L + Sbjct: 7 VYFGKRVALLRKDKHLTQEALAEACDLNRTYLSGLETGKRNPSLSTISKLAKALGIQMKE 66 Query: 73 FF 74 F Sbjct: 67 IF 68 >gi|241759132|ref|ZP_04757240.1| Helix-turn-helix [Neisseria flavescens SK114] gi|241320551|gb|EER56828.1| Helix-turn-helix [Neisseria flavescens SK114] Length = 76 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G +IR R ++QE L I + + E+G + +L +S L + Sbjct: 4 ISVLIGIKIREIRKQSNINQESLALLADIDRSYMGRIERGEVNITIDKLYQLSSALNCSV 63 >gi|268592649|ref|ZP_06126870.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311788|gb|EFE52241.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 80 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ +R+ ++ +K+ E + I+ + KYE G + L IS L + F Sbjct: 11 LGKFIKQKRIEHQITTKKMAELISISEKSYIKYEDGSLSIFIEHLMVISNTLNVDVKTLF 70 Query: 75 DV 76 D Sbjct: 71 DT 72 >gi|255652581|ref|ZP_05399483.1| hypothetical protein CdifQCD_20531 [Clostridium difficile QCD-37x79] Length = 149 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R++ R+ G+ Q +L E L ++ + YE A + ++E + Sbjct: 3 GERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYL 60 >gi|225181085|ref|ZP_03734532.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168282|gb|EEG77086.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 64 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R + QE L LG+T Q + E ++++LE+P+ F + Sbjct: 3 NKIKDLRKQKNLRQEDLALKLGVTRQTINAVENNKYNPTLELAMKLAKLLETPVEDIFQL 62 Query: 77 SP 78 Sbjct: 63 ED 64 >gi|229815890|ref|ZP_04446214.1| hypothetical protein COLINT_02946 [Collinsella intestinalis DSM 13280] gi|229808585|gb|EEP44363.1| hypothetical protein COLINT_02946 [Collinsella intestinalis DSM 13280] Length = 238 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRIR R G+SQ +L + + ++ Q V +EKG A L+ +S + D Sbjct: 39 KRIRGLREGAGISQARLAKLVFVSRQTVINWEKGRTLPDAESLKRLSAAFGITLDALLDE 98 Query: 77 SPTV 80 Sbjct: 99 RSEE 102 >gi|168205827|ref|ZP_02631832.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168213491|ref|ZP_02639116.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|169343302|ref|ZP_02864312.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169298600|gb|EDS80681.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170662662|gb|EDT15345.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170715060|gb|EDT27242.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 223 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+RI+ R GM+Q+ L + LG+ + V + E G + S + +S+VL + ++ Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLN 60 >gi|220928392|ref|YP_002505301.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998720|gb|ACL75321.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 133 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R + SQ+++ + LG + + + KYE G + S+ + + Sbjct: 6 ERIKSLRNVKRQSQKEVAKALGKSREAISKYELGEREPDPDVIVQFSKHFNVSSDYMLGI 65 Query: 77 SPTVCSDISSEENNV 91 + + + SSE Sbjct: 66 TDHIENIPSSERKPY 80 >gi|116510849|ref|YP_808065.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116106503|gb|ABJ71643.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 185 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R+ ++QE++ + L + Q + ++E L ++E+ +S + F Sbjct: 2 LGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNLETLIALAELYDSDLLAF 60 >gi|148261249|ref|YP_001235376.1| helix-turn-helix domain-containing protein [Acidiphilium cryptum JF-5] gi|146402930|gb|ABQ31457.1| helix-turn-helix domain protein [Acidiphilium cryptum JF-5] Length = 293 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+++R RM G+ E++ LG++ + +YEKG + ++ ++E+L+ Sbjct: 7 IGQQLRAYRMESGLKAEEIAARLGVSRAALYRYEKGEV-IKLDTVKRLAELLKISP 61 >gi|86144188|ref|ZP_01062525.1| DNA-binding helix-turn-helix protein [Leeuwenhoekiella blandensis MED217] gi|85829450|gb|EAQ47915.1| DNA-binding helix-turn-helix protein [Leeuwenhoekiella blandensis MED217] Length = 350 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 23 RMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R G SQ +L + + G++ + K+EKG+N + L I + L+ P+ FF Sbjct: 10 REYRGYSQTELAKNIDGLSQSNLSKFEKGINVLSDDILMKIIKFLDFPLGFF 61 >gi|85711642|ref|ZP_01042699.1| DNA-binding protein [Idiomarina baltica OS145] gi|85694502|gb|EAQ32443.1| DNA-binding protein [Idiomarina baltica OS145] Length = 63 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L + L ++ Q + E G I++V + I F Sbjct: 3 NRLKVLRAERNWTQNDLAQALSVSRQTINAIETGKFDPSLPLAFKIAKVFQCTIEDVFSD 62 Query: 77 S 77 Sbjct: 63 D 63 >gi|319744194|gb|EFV96561.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 59 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ R GM+QE+L + + + + V ++EKG + + + I+ E + F Sbjct: 2 KLKELRQAKGMTQEELAKVIDVNVRSVNRWEKGQSDIYLQKAIKIARFFEVSLDEF 57 >gi|311279673|ref|YP_003941904.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748868|gb|ADO48620.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 191 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ +G RIR+ R S +L + G++ + K E+G + A+ L +S Sbjct: 4 IEDTLNARIGARIRIERESRSWSLSELADRAGVSRTMIHKIERGDSSPTATMLGRLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|289549623|ref|YP_003470527.1| Transcriptional regulator, PBSX family [Staphylococcus lugdunensis HKU09-01] gi|315659741|ref|ZP_07912600.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289179155|gb|ADC86400.1| Transcriptional regulator, PBSX family [Staphylococcus lugdunensis HKU09-01] gi|315495029|gb|EFU83365.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 63 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R +GMSQE L + + ++ Q + E +++ ++ + F Sbjct: 3 NKIKAYRKKIGMSQETLSKNVNVSRQTINAIENNKYDPTLMLAFKLAKQFDTTVDDLF 60 >gi|171322013|ref|ZP_02910893.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171092688|gb|EDT37979.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 73 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G +R R SQE+L E G+ V + E+G I+ E IS Sbjct: 7 HFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFEVSIS 64 >gi|124486442|ref|YP_001031058.1| XRE family transcriptional regulator [Methanocorpusculum labreanum Z] gi|124363983|gb|ABN07791.1| transcriptional regulator, XRE family [Methanocorpusculum labreanum Z] Length = 63 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R + ++Q+ L + LG+T Q + EKG IS ++ I F Sbjct: 3 NKIKVYRAMHDLTQDALAKELGVTRQTILAIEKGKYDPSLELAFRISRYFQTTIEEIF 60 >gi|50914083|ref|YP_060055.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|50903157|gb|AAT86872.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 281 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 59/145 (40%), Gaps = 18/145 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V +K+ N D I+ R ++Q++L + L I + +E G N+ ++ Sbjct: 29 IVKEQKMANLSD-----NIKYFRKQNKLTQKELAKKLKIAPTAISAWEVGRNKPLMDNIE 83 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE---NNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++ + P S + +S E + + +T L+ +R + Sbjct: 84 QMTSIFGIPKSKLLGDEIYKIQETASPELIPSTLQKITATSSQLEHSR----------QL 133 Query: 118 KIIELVRSIVSSEKKYRTIEEECMV 142 +++ ++++ +K+ + E+ + Sbjct: 134 IVLDTAETLLNQQKEIKNNEDTVVE 158 >gi|321159775|pdb|3LFP|A Chain A, Crystal Structure Of The Restriction-Modification Controller Protein C.Csp231i gi|321159777|pdb|3LIS|A Chain A, Crystal Structure Of The Restriction-Modification Controller Protein C.Csp231i (Monoclinic Form) gi|321159778|pdb|3LIS|B Chain B, Crystal Structure Of The Restriction-Modification Controller Protein C.Csp231i (Monoclinic Form) gi|60418612|gb|AAX19732.1| Csp231I C protein [Citrobacter sp. RFL231] Length = 98 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQEKLG GI ++ +YEKG + +++VL+ P+S+ Sbjct: 4 RRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSY 63 Query: 73 FFDVSPTVCS 82 + + Sbjct: 64 LYTPEDDLAQ 73 >gi|134503|sp|P22753|SINR_BACLI RecName: Full=HTH-type transcriptional regulator sinR gi|551703|gb|AAA22439.1| flaD (sin) homologue; putative [Bacillus licheniformis] Length = 111 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 74 FDVSPTVCSDISSE---ENNVMDFIST 97 + D + EN V D +++ Sbjct: 62 LNEKDETEYDGQLDSEWENLVRDAMAS 88 >gi|326404663|ref|YP_004284745.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325051525|dbj|BAJ81863.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 292 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+++R RM G+ E++ LG++ + +YEKG + ++ ++E+L+ Sbjct: 6 IGQQLRAYRMESGLKAEEIAARLGVSRAALYRYEKGEV-IKLDTVKRLAELLKISP 60 >gi|317500679|ref|ZP_07958897.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|331089845|ref|ZP_08338738.1| hypothetical protein HMPREF1025_02321 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897873|gb|EFV19926.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|330403542|gb|EGG83100.1| hypothetical protein HMPREF1025_02321 [Lachnospiraceae bacterium 3_1_46FAA] Length = 178 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ GM+Q+ LG +G + ++ +YE G + A +++ L+ Sbjct: 2 MAIGERIHFFRILRGMTQKYLGTIVGFPERSADVRLAQYETGTRKPKAELTAALAQALDV 61 Query: 69 PI 70 Sbjct: 62 SP 63 >gi|310827449|ref|YP_003959806.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] gi|308739183|gb|ADO36843.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] Length = 67 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R ++Q +L GI+ V E G G + + I++VL+ + Sbjct: 2 MTIGEIIRTAREEKNLNQSQLAAKAGISQATVNYLETGKRNPGFTTIVKIAKVLDLNLED 61 Query: 73 FFDVS 77 + Sbjct: 62 LTESM 66 >gi|255306539|ref|ZP_05350710.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 187 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 KR++ R M+QE + L +T YE+G A L ++E+ + Sbjct: 86 KRLKELRAEKNMTQEDVANKLNLTKSAYGYYEQGKTVPDAYMLSSLAEIFNVTTDYL 142 Score = 47.1 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G+ Q+++ L IT YE+G L ++E + + + Sbjct: 7 RLKFLRKEKGVMQKEIANYLNITTSAYGFYEQGKRTPTPEMLSSLAEYFGTTVDYLIGRY 66 Query: 78 PTVCSDISSE 87 S+ISS+ Sbjct: 67 DNKASNISSK 76 >gi|196045124|ref|ZP_03112357.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196024126|gb|EDX62800.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 403 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKSLRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDDEMVEL 72 >gi|153815913|ref|ZP_01968581.1| hypothetical protein RUMTOR_02158 [Ruminococcus torques ATCC 27756] gi|145846732|gb|EDK23650.1| hypothetical protein RUMTOR_02158 [Ruminococcus torques ATCC 27756] Length = 179 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ GM+Q+ LG +G + ++ +YE G + A +++ L+ Sbjct: 3 MAIGERIHFFRILRGMTQKYLGTIVGFPERSADVRLAQYETGTRKPKAELTAALAQALDV 62 Query: 69 PI 70 Sbjct: 63 SP 64 >gi|91783258|ref|YP_558464.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687212|gb|ABE30412.1| Putative transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 106 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 14/120 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R++ R I G+SQ ++ + LG+ + + E G +V A L +E+ + + + Sbjct: 1 MSIAERLKEAREIAGLSQGQVAKRLGMHRPTISEIEAGRRKVAADELDLFAELYDVSVEW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + S V D + L R ++ D + +++ ++R + E K Sbjct: 61 IVNGS-------------VKDEAADARMLMAARELSKMSDQDL-DRLMNMLRMLRKGEDK 106 >gi|37676450|ref|NP_936846.1| hypothetical protein VVA0790 [Vibrio vulnificus YJ016] gi|37676458|ref|NP_936854.1| hypothetical protein VVA0798 [Vibrio vulnificus YJ016] gi|37200992|dbj|BAC96816.1| hypothetical protein [Vibrio vulnificus YJ016] gi|37201000|dbj|BAC96824.1| hypothetical protein [Vibrio vulnificus YJ016] Length = 170 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+ Q ++ + +G+T Q K+E G N AS ++ ++E+L S Sbjct: 9 LKEMRERKGLKQSEVADYVGVTAQTYMKWENGKNEPKASDIKKLAEILSVSES 61 >gi|163943351|ref|YP_001642581.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865548|gb|ABY46606.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 64 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR+ R +SQE L + ++ Q + E ++++ L + F Sbjct: 5 IRILRKEKKLSQEDLAKLCHVSRQTINAIENNKYDPTLELAFNLAKSLGVTVDQLF 60 >gi|93005522|ref|YP_579959.1| bifunctional HTH-domain-containing protein/aminotransferase [Psychrobacter cryohalolentis K5] gi|92393200|gb|ABE74475.1| transcriptional regulator, XRE family [Psychrobacter cryohalolentis K5] Length = 545 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 17 KRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R+ R GM+ E+L + + ++ + +E+G N + +S+L ++ +L Sbjct: 13 ERLVQLRRDKGMTAEQLAQAMTAAGAKVSRGAISNWERGTNGIVSSKLPTLARLLGCSEG 72 Query: 72 FF 73 + Sbjct: 73 YL 74 >gi|332074168|gb|EGI84646.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] Length = 383 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKIHLANQFHVDLTYFEQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ D S D ++T + Sbjct: 64 EEESIRFDSSVIAFRNAD-LATRKTID 89 >gi|303238242|ref|ZP_07324778.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302594288|gb|EFL64000.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 67 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R G +Q+ L + + ++ Q + E G I++V + I F Sbjct: 3 NKIKDLREQSGFTQQYLADKVNVSRQTIISLENGKYNPSIFLAYKIAKVFKMTIEDIF 60 >gi|300787181|ref|YP_003767472.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796695|gb|ADJ47070.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 22/63 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R R G+S ++ G+ + + E G L + L+ P S Sbjct: 27 IAASLRRERTRAGLSLTEVARRAGLAKSTLSQLESGTGNPSVETLWALGVALDVPFSRLV 86 Query: 75 DVS 77 + Sbjct: 87 EPD 89 >gi|297162225|gb|ADI11937.1| putative transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 190 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 24/75 (32%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ +++ L I+ D Sbjct: 13 RNLKRWRNERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 72 Query: 77 SPTVCSDISSEENNV 91 + V Sbjct: 73 ESGPKVQLVPAAQAV 87 >gi|254555377|ref|YP_003061794.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308179374|ref|YP_003923502.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044304|gb|ACT61097.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308044865|gb|ADN97408.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 67 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R++ G SQ++L GIT Q + EKG ++ VL + F V P Sbjct: 7 VKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHVLNQTLDTVFWVEP 66 Query: 79 T 79 + Sbjct: 67 S 67 >gi|302873902|ref|YP_003842535.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|302576759|gb|ADL50771.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 66 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R L ++Q++L + LG+T Q + E +S L F Sbjct: 6 NKVKEFRKQLKLTQDELAQELGVTRQTINAIENNKYNPTLELALKMSRFLGVSTESLF 63 >gi|218297117|ref|ZP_03497788.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23] gi|218242531|gb|EED09069.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23] Length = 214 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 20/115 (17%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR---VGASRLQHISEVLESPISFF 73 R+ RR LG++QE L G + + K E+G + A + +++ L P++ Sbjct: 14 ARLVERRKALGLTQEGLARLAGFSTSLMAKIERGAVDLRSLSAQHVVGLAKALGLPLNAL 73 Query: 74 FDVS------------PTVCSDISSEENNVMDFISTPD----GLQLNR-YFIQID 111 D P + +V F TP+ G +++R ++ + Sbjct: 74 LDEDLPGGEVAKPLLLPVYRAPEDLAREDVERFAITPEQVPPGAEVSRLAYLTLP 128 >gi|194016129|ref|ZP_03054744.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012484|gb|EDW22051.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 187 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K +RL R +S EK+ E G++ + + E+G + + L I+ L+ F Sbjct: 8 ISKNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVS---FS 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 ++ +I N ++ DG Sbjct: 65 ELIHAPQPEIKVVRNEDAQILTEDDG 90 >gi|153008774|ref|YP_001369989.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560662|gb|ABS14160.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 182 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF + P + + +++ Sbjct: 59 GMAEFFALEPDAPHKVFYQAEELVEI 84 >gi|150399074|ref|YP_001322841.1| XRE family transcriptional regulator [Methanococcus vannielii SB] gi|150011777|gb|ABR54229.1| transcriptional regulator, XRE family [Methanococcus vannielii SB] Length = 66 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++QE+LG+ +G+ + + EKG I++ L S I F Sbjct: 4 RIKEFRAKYNITQEELGKKVGVRRETINFLEKGKYNPSLKLAYLIAKTLNSTIDELF 60 >gi|110798931|ref|YP_697253.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110673578|gb|ABG82565.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 223 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+RI+ R GM+Q+ L + LG+ + V + E G + S + +S+VL + ++ Sbjct: 4 VGERIKEARQKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLN 60 >gi|71903695|ref|YP_280498.1| phage transcriptional repressor [Streptococcus phage 6180.1] gi|71802790|gb|AAX72143.1| phage transcriptional repressor [Streptococcus phage 6180.1] Length = 247 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 11/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R M+Q++L + G + +E G ++ ++ ++ L+ F Sbjct: 4 LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQLF 63 Query: 75 DVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S + + + + + ST L+ +R QI +++ +++ +K+ Sbjct: 64 DYSSSPTNPQVELIPSTLQKINSTSSQLEHSR---QI-------IVLDTAETLLEQQKEI 113 Query: 134 RTIEE 138 + E+ Sbjct: 114 KNNED 118 >gi|114567062|ref|YP_754216.1| hypothetical protein Swol_1542 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337997|gb|ABI68845.1| hypothetical protein Swol_1542 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 102 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 23/46 (50%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 R+ G+SQ+KL + LG+T V K E G +L I+ L Sbjct: 45 YRLKHGLSQKKLADKLGVTQAMVAKMESGDYNYTIEQLWKIANKLG 90 >gi|46206109|ref|ZP_00210190.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 191 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V +RIR R+ G + + L ++ + + E G R+ +L I+ L + Sbjct: 6 DLDAVVRQRIRGLRLARGWTLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTT 65 Query: 70 ISFFFDVSPTVCSDISSEEN 89 + + I E Sbjct: 66 LDQLVEPVDDEDVVIRPEPQ 85 >gi|325962304|ref|YP_004240210.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468391|gb|ADX72076.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 191 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ V + +G RIR R ++ E++ + G+T + + E+ + + L + +VL Sbjct: 8 PSNVPVAIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLS 67 Query: 68 SPISFFFDVSPT 79 I F T Sbjct: 68 ISIGDLFAAPET 79 >gi|291540748|emb|CBL13859.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 121 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRIR R ++Q++L + G+ + +Q EKG L + + L + Sbjct: 7 IFLGKRIRSARKECQLTQQELADQSGLAVKTIQDIEKGRKNPTYETLCLLVDRLGISGNT 66 Query: 73 FFDVSPTVCSDI 84 F V + Sbjct: 67 IFPSKAPVDEEA 78 >gi|260910939|ref|ZP_05917580.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634930|gb|EEX52979.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 110 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ IR R ++Q++LG+ +G+ Q+ K E G + + + + + L Sbjct: 40 YVGEAIRKARTAQHLTQDELGKLIGVQRSQICKLESGKSVITLPTMSRVFQALGIS 95 >gi|229021255|ref|ZP_04177890.1| hypothetical protein bcere0030_56710 [Bacillus cereus AH1273] gi|229027524|ref|ZP_04183752.1| hypothetical protein bcere0029_57360 [Bacillus cereus AH1272] gi|228733770|gb|EEL84536.1| hypothetical protein bcere0029_57360 [Bacillus cereus AH1272] gi|228739988|gb|EEL90350.1| hypothetical protein bcere0030_56710 [Bacillus cereus AH1273] Length = 51 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQE L +G+ + + E G I++VL +PI F Sbjct: 1 MSQEDLANEVGVRRETIGNLENGKYNPSFKLTYDIAKVLNAPIEVLF 47 >gi|224825808|ref|ZP_03698912.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224602032|gb|EEG08211.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 65 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ R LG++Q L + +G + + K E G +V + ++ L + Sbjct: 4 MKEARKRLGLTQNDLAKAVGASQAHISKLENGTEQVSPDLAKRLAVELGLDV 55 >gi|332527576|ref|ZP_08403623.1| helix-turn-helix domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332111979|gb|EGJ11956.1| helix-turn-helix domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 277 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R+ R G+SQ + LG + Q Q+ E G L +++ + + F Sbjct: 52 GRRLAEAREDAGLSQTEAAHRLGYSQQVQLSLMESGQRMPPLDVLLACTQLYGTTMDFLC 111 Query: 75 DVSPTVCSD------------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIE 121 ++P D +S+E V++ +S+ + + R I R +++ Sbjct: 112 GLAPDSDRDPALGIQRQLAAGLSAELRRVVEAMSSA-SVNVARA---IGPNAARLRRLAS 167 Query: 122 LV 123 LV Sbjct: 168 LV 169 >gi|291450131|ref|ZP_06589521.1| transcriptional regulatory protein [Streptomyces albus J1074] gi|291353080|gb|EFE79982.1| transcriptional regulatory protein [Streptomyces albus J1074] Length = 201 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 2/92 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +R R G + + L G++ + + E+ + + I + L ++ D Sbjct: 24 RNVRHWRAERGFTLDALATRSGVSRNMLIQIEQARTNPSIATVVKIGDALGVSVTSLLDY 83 Query: 77 S--PTVCSDISSEENNVMDFISTPDGLQLNRY 106 + P V V D + G L Sbjct: 84 ARGPRVRVVPPEATATVWDTTAGSHGRLLAGA 115 >gi|262040838|ref|ZP_06014065.1| repressor protein cI [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041821|gb|EEW42865.1| repressor protein cI [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 327 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 R+ RR +LG++QE L + G+T + K E G ++ L IS L + Sbjct: 101 RLISRRELLGLTQEALAKRAGVTRVAISKAELGLTKNFNSNTLFKISSALGCEPEWL 157 >gi|256378649|ref|YP_003102309.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922952|gb|ACU38463.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 271 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD VG +R R +SQ+ L E ++ + V + E G+ + ++E L+ P Sbjct: 13 VDEPVGVLLRAWRRRKSLSQQGLAEAAAVSARHVSRVETGLAHPTPEMILRLAEHLDVP 71 >gi|239978241|ref|ZP_04700765.1| transcriptional regulatory protein [Streptomyces albus J1074] Length = 190 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 2/92 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +R R G + + L G++ + + E+ + + I + L ++ D Sbjct: 13 RNVRHWRAERGFTLDALATRSGVSRNMLIQIEQARTNPSIATVVKIGDALGVSVTSLLDY 72 Query: 77 S--PTVCSDISSEENNVMDFISTPDGLQLNRY 106 + P V V D + G L Sbjct: 73 ARGPRVRVVPPEATATVWDTTAGSHGRLLAGA 104 >gi|255505869|ref|ZP_05348580.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265478|gb|EET58683.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 137 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI RR LG+ Q ++ E ++++ + E+ ++ + ++ L++ F Sbjct: 37 IGRRIARRRKQLGLKQAEVEEKADLSYKYLSNIERSISIPSIEVIMRLAVALDTTPDEFL 96 Query: 75 DVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYF 107 + ++ E NV + + P L L + F Sbjct: 97 VGTLQTENE---EWKNVAEILRNFDPKKLSLAKNF 128 >gi|187935844|ref|YP_001893672.1| putative LexA repressor [Clostridium botulinum B str. Eklund 17B] gi|187723996|gb|ACD14202.1| putative LexA repressor [Clostridium botulinum B str. Eklund 17B] Length = 235 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--F 74 K ++ R M QE L +G+ + YE + + L +I+ + I+ Sbjct: 10 KNLKKLRTFNKMKQEDLAVKIGVARSNISYYETQKSEPTLTPLINIANIFNVTINELVTV 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 +++ + + + +++N+ S+ + Sbjct: 70 ELTDDIIQEKNQQQDNITKVFSSSE 94 Score = 39.0 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 30/86 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K ++ R+ M Q +L + + + + YE G + L I + +S Sbjct: 98 KNLKELRIGKNMYQIELAKEVKTSKSNISFYESGRSEPTLGVLMRICDFFNIKLSELVSK 157 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 I SE + + + ++ Sbjct: 158 DLKPTEWIKSESDFIKKISYDLESVE 183 >gi|172057379|ref|YP_001813839.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989900|gb|ACB60822.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 71 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R SQ +L E LG++ Q V EK I+ + + PI F Sbjct: 3 NRMKGLREARQWSQGQLAEALGVSRQTVISIEKERYNPSLELAFSIAALFDCPIEEIF 60 >gi|170783251|ref|YP_001711585.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157821|emb|CAQ03026.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 152 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +R R +SQE+LG +G++ V +E G + + ++ + L Sbjct: 50 LRRVREHRSLSQEQLGALMGVSQATVSSFESGASEPKLATIRRYAHALNV 99 >gi|86608150|ref|YP_476912.1| hypothetical protein CYB_0663 [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556692|gb|ABD01649.1| conserved domain protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 132 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECL---GIT--FQQVQKYEKGVNRVGA 56 + + +P +G+R+R R L ++Q++L L G+ + ++ + EKG RV Sbjct: 48 MESNDRHHPSANLIGERVRWVREKLQLTQDQLAGRLAKYGVQLDYVKIGQVEKGKRRVID 107 Query: 57 SRLQHISEVLESPISFFFDVSPT 79 L ++ L +++ + Sbjct: 108 KELVAFAKALGVSVTWLLSGDES 130 >gi|33591919|ref|NP_879563.1| putative transcriptional regulator [Bordetella pertussis Tohama I] gi|33571563|emb|CAE41048.1| putative transcriptional regulator [Bordetella pertussis Tohama I] gi|332381336|gb|AEE66183.1| putative transcriptional regulator [Bordetella pertussis CS] Length = 142 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R + +SQE L G++ V YE G+ R + ++ ++ L+ + +F Sbjct: 7 RLKHARRLRQLSQENLAHISGLSQSAVASYENGL-RQSSRSIRKLAIALQVNLDWF 61 >gi|332362850|gb|EGJ40643.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 225 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLAQASIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|326943047|gb|AEA18943.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 63 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|324993435|gb|EGC25355.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|325694151|gb|EGD36069.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|327461709|gb|EGF08040.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] gi|327489562|gb|EGF21355.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 225 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLAQASIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|302335525|ref|YP_003800732.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319365|gb|ADK67852.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 398 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I R + G +Q++L E LG++ V K+E G + + L I+ + Sbjct: 5 VSIGSVIARERRLRGDTQQELAERLGVSKAAVSKWEVGQSIPDVTLLPRIAAYFSLTLDE 64 Query: 73 FFDVSPTVCSD 83 F + ++ Sbjct: 65 LFGYRSVLSNE 75 >gi|298385377|ref|ZP_06994935.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|298261518|gb|EFI04384.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 103 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 22/38 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 +G+ I+ R M+QE+L + +G+ QV K E G N Sbjct: 37 IGEAIKKARKSQNMTQEELAQKIGVQRAQVSKIESGRN 74 >gi|300088555|ref|YP_003759077.1| XRE family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528288|gb|ADJ26756.1| transcriptional regulator, XRE family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 145 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 10/114 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R RR+ + ++ ++L + GI+ + + E+G A L ++ L+ + F Sbjct: 16 LGAVLRRRRLEIPLTLQELADRSGISVSHIGRIERGERFPSAKVLLRLACHLQYEENELF 75 Query: 75 DV-----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P I + + + L R + V+V++ ++ L+ Sbjct: 76 ALAGYLTPPESPGSIDASPADRTPRLDPQVARILAR-----EPVEVQRSVVSLL 124 >gi|323341937|ref|ZP_08082170.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464362|gb|EFY09555.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 63 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ +R L ++Q++L + G+T Q + E +I++ L++ + F Sbjct: 5 IKEKRKALKLTQQELADQTGVTRQTILAVEHNKYVPSLQLAFNIAKALKTDLQDVF 60 >gi|256846912|ref|ZP_05552366.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294784253|ref|ZP_06749548.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium sp. 3_1_27] gi|256717710|gb|EEU31269.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294488119|gb|EFG35470.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium sp. 3_1_27] Length = 94 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K +R RR L ++QE+ + G++F ++++E + L I+ Sbjct: 7 NIKTPKEIQLEIAKNVRKRRKELKLTQEEFSKKSGVSFGSIKRFEN-TGEISLFSLIKIA 65 Query: 64 EVLES 68 +L+ Sbjct: 66 IILDC 70 >gi|254555930|ref|YP_003062347.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254044857|gb|ACT61650.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 122 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R+ R S+ ++ LG++ Q+ YE G N + L+ I+++ + + Sbjct: 11 RRLINLRDSRNWSKTEVARKLGLSSMQRYANYEYGTNEPDLNMLKQIADLYDVTTDYLLG 70 Query: 76 VSPTVCSDISSEENNVMDFIS 96 + + ++ DF++ Sbjct: 71 EDSASKWIVRKDTTDLKDFLT 91 >gi|226334782|ref|YP_002784454.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226246002|dbj|BAH56102.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 164 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G ++R +R+ ++ + L +G T Q V +E G +R L ++E L++ I+ Sbjct: 25 GDKLREQRVKARLTPDDLAARIGTTRQAVSTWETGRSRPAPEMLGLLAEALDTSIA 80 >gi|167465091|ref|ZP_02330180.1| transcriptional regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 87 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +GK I+ R+ +SQE+L E L I + K+E + ++H+S + + Sbjct: 5 IGKTIKELRIKHKLSQEELAEKLNKNFGTSINKGMISKWENDLGDPRLETVRHLSMLFDV 64 Query: 69 PISFFFDVSPTVCSDISSEEN 89 + F + I++ + Sbjct: 65 SLDFLLGLEKKEPETIAAHHD 85 >gi|83952252|ref|ZP_00960984.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837258|gb|EAP76555.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 477 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 55/143 (38%), Gaps = 24/143 (16%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + G ++R R LG++Q+ LG++ + + E V + + +++ Sbjct: 15 PRKLYAGAKLRETRSRLGLTQKDFAARLGVSLPYLNQMENNNRPVSTTVVLALAQEFG-- 72 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTP----------------DGLQLNRYFIQIDDV 113 FDV+ D +++ + ++ P + L R F+++ Sbjct: 73 ----FDVTELGSGDAERMVSDMREALADPVFSDPPPLSDLRLAAGNAPALARAFLELHAA 128 Query: 114 --KVRQKIIELVRSIVSSEKKYR 134 + +++ L ++ + + + Sbjct: 129 YRQTHERLASLDEALGRDDAQTQ 151 >gi|332158049|ref|YP_004423328.1| hypothetical protein PNA2_0406 [Pyrococcus sp. NA2] gi|331033512|gb|AEC51324.1| hypothetical protein PNA2_0406 [Pyrococcus sp. NA2] Length = 316 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 36/70 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++++ R G + +L LGI+ + +Q+YEKG + V + E+ + P+ D Sbjct: 128 GRKLKMLREEHGYTLAELARILGISRKSLQRYEKGESVVSVEVALRLEEIFDEPLVKPID 187 Query: 76 VSPTVCSDIS 85 V D+S Sbjct: 188 VLKARLEDVS 197 >gi|313114371|ref|ZP_07799903.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623326|gb|EFQ06749.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 219 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 ++ R + G+SQ +L + + +Q+YE K +N+ A L ++ L + Sbjct: 151 NLKAMRTLAGLSQSELAGQADVPVRTIQQYEQRQKDINKAQAETLLRLARALNCNVEDLM 210 Query: 75 DVSPT 79 + P Sbjct: 211 EKVPP 215 >gi|302379982|ref|ZP_07268461.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302312208|gb|EFK94210.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] Length = 67 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI R LG+SQ +L + +G+ + + YE I +VL I F Sbjct: 7 NRIAEFRKELGLSQHRLAKAVGMKRRSIMAYENNTISPTLETAYKICKVLNKDIKEVF 64 >gi|300309752|ref|YP_003773844.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072537|gb|ADJ61936.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 89 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ R G++Q ++ LG+T Q + E+ ++V A RL + +L Sbjct: 16 LQAYRKQSGLTQSEVARRLGVTQQNLSSLERNADKVSAERLIELLNILGV 65 >gi|294678447|ref|YP_003579062.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477267|gb|ADE86655.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 249 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G R+ R +SQ LG LG++ + E G + + LQ ++E + Sbjct: 6 GLRLSSWRKEQKLSQRALGSVLGVSQGYISDIESGRSEPSRNFLQALTERFGVSADW 62 >gi|291532702|emb|CBL05815.1| Helix-turn-helix [Megamonas hypermegale ART12/1] Length = 76 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV--NRVGASRLQHISEVLESPI 70 +G RI R + +QE+L I+ + + E+G+ V S L IS+ L+ I Sbjct: 9 RLIGARIAYFRKLKRYTQEELAFRASISTSYLSRIERGIYSKGVPISTLMQISKALDIDI 68 Query: 71 SFFFD 75 F+ Sbjct: 69 KLLFE 73 >gi|260427243|ref|ZP_05781222.1| helix-turn-helix domain protein [Citreicella sp. SE45] gi|260421735|gb|EEX14986.1| helix-turn-helix domain protein [Citreicella sp. SE45] Length = 228 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + + R + ++QE L + G+T + +QK E G + L+ ++ L I+ F Sbjct: 10 YIATQCKYIRKMFSLTQENLADASGLTVRTIQKVESGRHVPEVQTLRSLARGLGFDITVF 69 Query: 74 FDVSPTVCSDISSEEN 89 PT +I +E Sbjct: 70 --SKPTPEQEIRQQEE 83 >gi|258514722|ref|YP_003190944.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257778427|gb|ACV62321.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 116 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G RIR R G +QE++ E + T Q+ + EKG+ + + I+++L Sbjct: 5 LGARIRALRESKGFTQEQVAEKMSCTRQKYARIEKGLIDTSYASITAIAQILGI 58 >gi|255292250|dbj|BAH89373.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292348|dbj|BAH89468.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292589|dbj|BAH89700.1| XRE family transcriptional regulator [uncultured bacterium] gi|255293091|dbj|BAH90185.1| XRE family transcriptional regulator [uncultured bacterium] Length = 168 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R++LG+S ++GE +G+T + K E ++ + L + L +S F Sbjct: 25 IGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNMSELF 84 Query: 75 DVSPTVCSDIS 85 S I+ Sbjct: 85 ATSSDDGLPIT 95 >gi|290580743|ref|YP_003485135.1| hypothetical protein SmuNN2025_1217 [Streptococcus mutans NN2025] gi|254997642|dbj|BAH88243.1| hypothetical protein [Streptococcus mutans NN2025] Length = 79 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E + +T + V K+E+ ++ + + ++E+ E + Sbjct: 6 LGMMISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLSFPDINSIPKLAEIFEVSVDDLM 65 Query: 75 DVSPTVCSDIS 85 V I Sbjct: 66 QVKTNTKETIG 76 >gi|222150597|ref|YP_002559750.1| hypothetical protein MCCL_0347 [Macrococcus caseolyticus JCSC5402] gi|222119719|dbj|BAH17054.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 167 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ IR R ++ +++ E ++ + + E + + ++ I++ LE S Sbjct: 1 MSIGENIRKIRKERELTLKQVAELTDLSIPFLSQLETNKSDATMATIRLIADALEVHPSQ 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|254382154|ref|ZP_04997515.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194341060|gb|EDX22026.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 269 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R G+SQ +L G + + + E G R L +++ L+ P+ Sbjct: 9 VGALLRTWRGRRGISQLELAGRAGSSSRHISFVETGRARPSEELLLRLADQLDVPV 64 >gi|171916012|ref|ZP_02931482.1| transcriptional regulator, XRE family protein [Verrucomicrobium spinosum DSM 4136] Length = 70 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R ++Q++LG+ LG++ Q V E + IS V + P+ F Sbjct: 3 NRLKVLRAEHNLTQDELGKILGVSRQAVNALETEKHSPSLDLAYRISTVFKQPVEQIFQN 62 Query: 77 SPTVCSD 83 T + Sbjct: 63 PHTGEGE 69 >gi|119433803|gb|ABL74963.1| TlmR2 [Streptoalloteichus hindustanus] Length = 399 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P D ++G+ I R G++Q +L I+ +QK E G S + ++ L Sbjct: 1 MPLDDDTHIGRTIARFRKAAGLNQHQLAARANISLSLLQKVEIGDRAANHSTIAGVARAL 60 Query: 67 ESPI 70 P Sbjct: 61 HLPP 64 >gi|56695066|ref|YP_165413.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56676803|gb|AAV93469.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 R++ R G+S E + G++ V + E+G + + L +++ L+ Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVD 66 >gi|327398850|ref|YP_004339719.1| helix-turn-helix domain-containing protein [Hippea maritima DSM 10411] gi|327181479|gb|AEA33660.1| helix-turn-helix domain protein [Hippea maritima DSM 10411] Length = 191 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 18/139 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPISFF 73 +G+R++ R G+SQ+++ E + +T + Q+YEK + +L I L + ++ Sbjct: 5 LGERLKAIRQAKGLSQKEMAEIMDVTLRAYQRYEKDEQKASYEKLARIVYELKDINSNWL 64 Query: 74 F--------------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + D+S ++ +S D L + + R ++ Sbjct: 65 LTGEGDMFIKNGMPEEFLERLKEDLSKASAESVNSLSFKDRLD---AVLSGREKLERVEV 121 Query: 120 IELVRSIVSSEKKYRTIEE 138 IEL R + ++Y + Sbjct: 122 IELARVLKQPAEEYLKLAN 140 >gi|291536934|emb|CBL10046.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 191 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI+ R GM+Q++LGE LG + ++ +YE ++ +S++ + Sbjct: 1 MAIGQRIKFFRNRKGMTQKQLGEQLGFKGKTSDVRMAQYESEARVPKIDLVKQMSQIFDV 60 >gi|317132647|ref|YP_004091961.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470626|gb|ADU27230.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 169 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RIR R + GM+Q+ LG +G + +V +YE G + ++ I+ L+ Sbjct: 1 MAIGERIRFIRNLRGMTQKWLGMAIGFDKRTADVRVAQYEAGTRTPKGNLVESIARALDI 60 >gi|262204600|ref|YP_003275808.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262087947|gb|ACY23915.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 233 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 2/90 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + +R R+ G+S + +GI+ + K E S L ++ + + F Sbjct: 50 IARNVRRLRLQEGLSVGDMAARVGISKAMLSKIENAQTSCSLSTLARLATAFDVSPTSLF 109 Query: 75 DVSPTVCSDISSEENNVMDFIS--TPDGLQ 102 + S + + I + +G + Sbjct: 110 RGADIERSAVFVKNGEGSQIIREGSREGHE 139 >gi|257418469|ref|ZP_05595463.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|257160297|gb|EEU90257.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] Length = 250 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMRETRKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FF 73 + Sbjct: 84 WL 85 >gi|255005001|ref|ZP_05143602.2| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus Mu50-omega] Length = 52 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 M+Q++L +G+T Q + EKGV+ S ++I VL + F P Sbjct: 1 MTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIFGEKP 51 >gi|239832573|ref|ZP_04680902.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239824840|gb|EEQ96408.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 182 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF + P + + +++ Sbjct: 59 GMAEFFALEPDAPHKVFYQAEELVEI 84 >gi|238922230|ref|YP_002935744.1| hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC 27750] gi|238873902|gb|ACR73610.1| Hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC 27750] Length = 110 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 15/112 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+++ R+ G+ Q+ + + + E +V L +I L + + Sbjct: 13 IGKKLKEIRLSKGLPQDAVASVAEVNTSHISNIENNRVKVSLPTLIYICNALGVTVDY-- 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + S E D + ++ + F DD K R ++ +VR++ Sbjct: 71 ---------VLSGEYASDDSAIDREIMKELQSFS--DDEKER--VLRVVRAL 109 >gi|228918935|ref|ZP_04082320.1| hypothetical protein bthur0012_60380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840737|gb|EEM85994.1| hypothetical protein bthur0012_60380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 51 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQE L +G+ + + E G I++VL++PI F Sbjct: 1 MSQEDLANEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLF 47 >gi|207721971|ref|YP_002252409.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2] gi|207744683|ref|YP_002261075.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609] gi|206587144|emb|CAQ17728.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2] gi|206596090|emb|CAQ63017.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609] Length = 113 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P P+ +G+RI+ R SQE L + + E+G+ L ++ Sbjct: 13 STSRPAPILTALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANLC 72 Query: 64 EVLESPISFFF 74 L ++ F Sbjct: 73 YALNVTLAELF 83 >gi|188532563|ref|YP_001906360.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188027605|emb|CAO95455.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 87 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G SQ+KLG GI ++ +YE+G++ + ++ VL+ P + Sbjct: 5 RLKEARLKKGFSQQKLGVLAGIDEATASARMNQYERGIHVPDFELVCRLAAVLDVPACYL 64 Query: 74 FDVSPTVCSDI 84 + + + I Sbjct: 65 YTLEDDLAGQI 75 >gi|149920439|ref|ZP_01908908.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149818754|gb|EDM78197.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 199 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRIR R ++ +++G ++ + + E+ + S L I+ L+ IS Sbjct: 135 ITIGKRIREVRRQRSLTLKQMGRRTNLSVSLLSQIERAESSASVSSLFKIANALDVRISE 194 Query: 73 FF 74 F Sbjct: 195 LF 196 >gi|126738636|ref|ZP_01754341.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] gi|126720435|gb|EBA17141.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] Length = 188 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S E + G++ V + E+G + + L +++ L+ + + Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLED 73 Query: 77 S 77 Sbjct: 74 G 74 >gi|116695951|ref|YP_841527.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530450|emb|CAJ96797.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 196 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R++ G + +L G + + K E+G+ + L ++ L++ I Sbjct: 21 LGVKLRHARLVAGYTLLQLAGKAGCSESLISKIERGLATPSFTTLHRLAVALDTNIGALT 80 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 D P + E V+ G+ L R Sbjct: 81 SDEEPNQSPILRHGERPVI----RAGGVALER 108 >gi|124268515|ref|YP_001022519.1| putative transcription regulator protein [Methylibium petroleiphilum PM1] gi|124261290|gb|ABM96284.1| putative transcription regulator protein [Methylibium petroleiphilum PM1] Length = 94 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ R G++Q L LG+T Q + E+ V A+RL + +L+ Sbjct: 16 LQSFRKAAGLTQADLAARLGVTQQTLSALERNAGTVSAARLMKLLSILDV 65 >gi|310826136|ref|YP_003958493.1| hypothetical protein ELI_0514 [Eubacterium limosum KIST612] gi|308737870|gb|ADO35530.1| hypothetical protein ELI_0514 [Eubacterium limosum KIST612] Length = 220 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI---SEVLESP 69 VG+RI+ RR+ L +S +LG+ + + +Q+YE + V R I +E L + Sbjct: 10 KQVGERIKERRIELKLSMPELGKRISVNKSTIQRYE--ADGVDPKRTMIINGLAEALLTT 67 Query: 70 ISFFFDVSPTVCSDI 84 + +S D Sbjct: 68 PEWLTGLSEEKEYDA 82 >gi|228911093|ref|ZP_04074900.1| Transcription regulator, probable-related protein [Bacillus thuringiensis IBL 200] gi|228848597|gb|EEM93444.1| Transcription regulator, probable-related protein [Bacillus thuringiensis IBL 200] Length = 68 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 7 NNVKKYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 64 >gi|227486708|ref|ZP_03917024.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227235296|gb|EEI85311.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 134 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R+ ++QE++ E L ++ Q + +E + +S++ + + Sbjct: 1 MKIGDKLKNARLHKKLTQEEVAEKLFVSRQSISNWENNKTYPDIGNVIALSDLYQISLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 S + + V Sbjct: 61 LLKGSDNFMKHLEESTDIV 79 >gi|253702724|ref|YP_003023913.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251777574|gb|ACT20155.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 307 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR---VGASRLQHISEVLESPISF 72 G RIR R ++Q + +G+T + ++E NR + Q +++ LE P+ Sbjct: 20 GTRIRTVREAKRLTQLYVANVVGVTTDTISRWEN--NRYPSIKRENAQKLADALEVPLVD 77 Query: 73 FFDVSPTVCSDISSEE 88 TV D + + Sbjct: 78 ILREETTVPEDEAGAD 93 >gi|157961107|ref|YP_001501141.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846107|gb|ABV86606.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 118 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 2/86 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG + R LGM Q ++ GI+ + + EKG + +L I L Sbjct: 11 VGFELEKIRKELGMEQSEVSVATGISQPVLSRLEKGKAMITIDQLFVICGALGVKPEDII 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 + S+EE + +T + Sbjct: 71 SKTSKGVEAFSTEEA--VKVTTTKEA 94 >gi|221068405|ref|ZP_03544510.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220713428|gb|EED68796.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 491 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 54/125 (43%), Gaps = 14/125 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G++Q L + L ++ + + E+ + S L I VL I F Sbjct: 5 FMGVRLRSLRAERGLTQVALAQALELSPSYLNQIEQDQRPLTVSVLLRIHRVLGVDIQQF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ---KIIELVRSIVSSE 130 S + + ++ + + + P+ + ++R+ ++ +L +++++ Sbjct: 65 ---SEDEEARLLAQLRDAVAAMPLPEA--------AVPLPELREVAARLPQLAQALLAIH 113 Query: 131 KKYRT 135 +++ Sbjct: 114 QRHLA 118 >gi|18311546|ref|NP_563480.1| hypothetical protein CPE2564 [Clostridium perfringens str. 13] gi|18146230|dbj|BAB82270.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 223 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+RI+ R GM+Q+ L + LG+ + V + E G + S + +S+VL + ++ Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLN 60 >gi|146297530|ref|YP_001181301.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411106|gb|ABP68110.1| helix-turn-helix domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 373 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I + ++L + +G+T Q + KY +G + + +L I+E P+ +F Sbjct: 7 IGNNIHALMKKQNVKIKQLADLIGVTRQTMTKYLEGEVIIDSEKLFKIAEFFGKPLDYFL 66 Query: 75 D 75 + Sbjct: 67 E 67 >gi|77412917|ref|ZP_00789121.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161057|gb|EAO72164.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 76 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R G+ Q+++ LGI +E G + + ++++ ++ F V Sbjct: 14 KRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSEPNLENVVKLAKLFKTTTDFLLGV 73 Query: 77 SPT 79 + Sbjct: 74 TDD 76 >gi|119714341|ref|YP_921306.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614] gi|119535002|gb|ABL79619.1| helix-turn-helix domain protein [Nocardioides sp. JS614] Length = 210 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 29/89 (32%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G + V + + I R G+S L + G+ + E+GV + Sbjct: 1 MNGRTPAQSFVSGPLSRAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGNPTLETIF 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 +S L PI S ++ Sbjct: 61 ALSRGLGVPIGELVSSEEEAASTFVGRDD 89 >gi|332826638|gb|EGJ99467.1| hypothetical protein HMPREF9455_00500 [Dysgonomonas gadei ATCC BAA-286] Length = 72 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VG +IR R +S L + L I + + + EKG L I + L+ Sbjct: 10 VGLKIREIRESRDLSMMDLADKLDIEYNNLIRIEKGRTNPTLGTLYKICQALDV 63 >gi|302058988|ref|ZP_07250529.1| peptidase [Pseudomonas syringae pv. tomato K40] Length = 81 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K +G R++L R G++Q +L E +G++ + + E+G A Sbjct: 1 MSGAKNSST-----LGGRVKLARDATGLTQLELAELVGVSQAAISEIERGE---SARTAY 52 Query: 61 --HISEVLESPISFFFDVSPTVCSD 83 IS + I + S+ Sbjct: 53 LPEISRACGADIQWLAFGGERPASE 77 >gi|298240985|ref|ZP_06964792.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297554039|gb|EFH87903.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 1237 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 12/89 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESP 69 +D G+R+ R +G++QE L LGIT + + ++E G A+ LQ ++ L+ Sbjct: 9 LDYVFGQRMLALRTSIGLTQEGLAAALGITRKTIGRWEAGEMYPKAAHLQALLAFALQ-- 66 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTP 98 EE + F S Sbjct: 67 ---------QGAFAAGQEEEEIRAFWSAA 86 >gi|293570317|ref|ZP_06681377.1| DNA-binding protein [Enterococcus faecium E980] gi|291609596|gb|EFF38858.1| DNA-binding protein [Enterococcus faecium E980] Length = 370 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 6 LSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVD 62 >gi|288870629|ref|ZP_06114758.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288866515|gb|EFC98813.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 127 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R G +Q L + +G++ + E + ++ I L S+ Sbjct: 7 IGARLKQARSSKGYTQNSLADAIGVSRGVITNIEHEKSEPQMLVIRGICYELGINSSWLL 66 Query: 75 DVSPTVCSDISSE 87 + S+ +E Sbjct: 67 QGEGPMESEKDAE 79 >gi|251778460|ref|ZP_04821380.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082775|gb|EES48665.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 432 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L + IT Q+ E G + L++++ L I Sbjct: 6 LGEKIKTRRKELNMTLKDLAKN-RITPGQISLIESGRSNPSMDLLEYLAATLNISIEHLM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + + IS V + Sbjct: 65 ESEESQAEKISIYYEQVAE 83 >gi|206579409|ref|YP_002238593.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|288935580|ref|YP_003439639.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|206568467|gb|ACI10243.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|288890289|gb|ADC58607.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 160 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 18/100 (18%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ SQE+L E G++ + +Q+ E G R G L ++ V E ++ ++ Sbjct: 5 NQVKQLRLQRAWSQEQLAEMAGLSVRTIQRIENGE-RPGLETLSALAAVFEVTVA---EI 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + +D +I++ K R Sbjct: 61 GGEASREGAPGPEASLDL--------------RIEEAKAR 86 >gi|182680496|ref|YP_001834642.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636379|gb|ACB97153.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 477 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G +IR R ++Q E LGI+ + + E + AS L +++ +S F Sbjct: 8 GTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSVDLSEFAQ 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + D+ + + TP G L Sbjct: 68 EDTDRLIGDLKEALADPLFSGLTPSGQDL 96 >gi|154506244|ref|ZP_02042982.1| hypothetical protein RUMGNA_03786 [Ruminococcus gnavus ATCC 29149] gi|153793743|gb|EDN76163.1| hypothetical protein RUMGNA_03786 [Ruminococcus gnavus ATCC 29149] Length = 162 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG---VNRVGASRLQHISEVLESPI 70 ++ R + M+Q++L E GI +Q+QKYE G +++ +++ LE + Sbjct: 19 LKELRKFMNMTQKELAEKSGINLRQIQKYEYGEYDTSKMMLRNAIALADALECDV 73 >gi|16798819|ref|NP_463497.1| putative repressor protein [Listeria phage A118] gi|254825098|ref|ZP_05230099.1| phage protein [Listeria monocytogenes FSL J1-194] gi|254901046|ref|ZP_05260970.1| hypothetical protein LmonJ_14568 [Listeria monocytogenes J0161] gi|254914004|ref|ZP_05264016.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254933700|ref|ZP_05267059.1| phage protein [Listeria monocytogenes HPB2262] gi|5823634|emb|CAB53822.1| putative repressor protein [Listeria phage A118] gi|293585264|gb|EFF97296.1| phage protein [Listeria monocytogenes HPB2262] gi|293592021|gb|EFG00356.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594341|gb|EFG02102.1| phage protein [Listeria monocytogenes FSL J1-194] gi|332310432|gb|EGJ23527.1| Cro/CI family transcriptional regulator [Listeria monocytogenes str. Scott A] Length = 101 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I R G+SQ +L + L ++ + +E + + +++ + Sbjct: 1 MTIGKKISELRNKRGISQIQLAKDLNVSTSTIGMWETDKRAIKDELIVQLADYFNVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 SD+ + + + ++ + +++ +Y I K Sbjct: 61 LLGREKFDNSDLLAAH--IDNDLTEEERIEIEKYLKFIRSQK 100 >gi|325568103|ref|ZP_08144544.1| hypothetical protein HMPREF9087_0833 [Enterococcus casseliflavus ATCC 12755] gi|325158304|gb|EGC70455.1| hypothetical protein HMPREF9087_0833 [Enterococcus casseliflavus ATCC 12755] Length = 206 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G++I+ R ++QE+ L +T Q V +E N L I+ + + + Sbjct: 50 MEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAIATIFQLSLD 108 >gi|312888142|ref|ZP_07747725.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299409|gb|EFQ76495.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 69 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G+SQ+ L + + E G + L+ I++ L+ +S F Sbjct: 7 VGSRIREIREKNGISQKDLSYTADLDRSYIASVENGQRNISIVNLEKIAKALKVNLSELF 66 Query: 75 DV 76 Sbjct: 67 QG 68 >gi|227329661|ref|ZP_03833685.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 188 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 2/94 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G ++ R G S + E G++ + + E+G + + L I+ + Sbjct: 1 MSDELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGM 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 S F + PT+ + + + + Sbjct: 61 NVAFSSFIE--PTLADEDVTYRSGTGSSFRENEA 92 >gi|221316986|ref|YP_002533130.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1] gi|221243318|gb|ACM16026.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1] Length = 112 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 28/79 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R G +Q+ LGE +G + E + ++VL+ + Sbjct: 3 GERIKQLRKARGWTQDDLGEAVGFKKATISLIENNKRNREERSVTKFADVLDCTTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDF 94 +S DF Sbjct: 63 LSDDPKLSGEQNTRLKKDF 81 >gi|91780477|ref|YP_555684.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693137|gb|ABE36334.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 119 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ ++QE+LG GI ++ +YE+G + Q ++ L P SF Sbjct: 13 KRLKEARVRARLTQEQLGINAGIDEFSASARINQYERGKHLPHLLMGQRLARALHVPTSF 72 Query: 73 FFDVSP 78 ++ Sbjct: 73 LYEEDD 78 >gi|126452632|ref|YP_001067412.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|242317409|ref|ZP_04816425.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|126226274|gb|ABN89814.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|242140648|gb|EES27050.1| DNA-binding protein [Burkholderia pseudomallei 1106b] Length = 195 Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVSPTV 80 ++ F+ Sbjct: 62 LASLFEDDRAA 72 >gi|332534116|ref|ZP_08409964.1| hypothetical protein PH505_bb00220 [Pseudoalteromonas haloplanktis ANT/505] gi|332036405|gb|EGI72874.1| hypothetical protein PH505_bb00220 [Pseudoalteromonas haloplanktis ANT/505] Length = 208 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFD 75 +R+R R+ G+SQ + E +G+ +V YE +N+ V L+ ++ + + + Sbjct: 18 ERMRKARINAGLSQREAAEKIGVGQSRVSNYENEINKNVPPEFLKLCAKAYNCSLEYLYG 77 Query: 76 VSPTVCSD 83 + + Sbjct: 78 FTDEIEGG 85 >gi|317486514|ref|ZP_07945338.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922243|gb|EFV43505.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 114 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 3/99 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I RR ILGM+Q +L L + + + E G +R++ +++VLE ++ F Sbjct: 13 LGNSIVERRKILGMTQIELANRLDMAPDALSRIENGYVAPRFNRIEEMAKVLECSVAELF 72 Query: 75 DVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQI 110 S +++ + + + L +F+ I Sbjct: 73 REKNDSLKTRSDCIADIISPLPAEKQEEVISLVSHFVSI 111 >gi|310657705|ref|YP_003935426.1| DNA-binding protein [Clostridium sticklandii DSM 519] gi|308824483|emb|CBH20521.1| DNA-binding protein [Clostridium sticklandii] Length = 183 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +I+ R G + + L + ++ + + E G + + + L+ + + P+++FF Sbjct: 7 IADKIKELRKEKGYTLKDLADKTELSVSFLSQVENGSSSLAITSLKKLVDAFSVPMTYFF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL--QLNR 105 T + +E +GL + R Sbjct: 67 YSMETHNYHVKIDEQKSFKM----EGLPSEFVR 95 >gi|302521866|ref|ZP_07274208.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302430761|gb|EFL02577.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 214 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 14/69 (20%) Query: 13 INVGKRIRLRRMILGMSQEKLG-----------ECLGITFQQVQKYEKGVNRVGASRLQH 61 +N+G+RIR RR+ LG SQE+L E LG Q++ +YE G R L Sbjct: 4 MNIGERIRDRRLQLGWSQERLAREACRVAGVGPEKLG--RQEIYRYETGR-RTPRDWLAP 60 Query: 62 ISEVLESPI 70 I++ L + Sbjct: 61 IAQALGLSV 69 >gi|283833052|ref|ZP_06352793.1| DNA-binding protein [Citrobacter youngae ATCC 29220] gi|291070671|gb|EFE08780.1| DNA-binding protein [Citrobacter youngae ATCC 29220] Length = 178 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LRTLRHQREWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PESDGTPTFDPQQQAMVVTP 89 >gi|283768120|ref|ZP_06341035.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283461999|gb|EFC09083.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] Length = 79 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R+ GMSQ+K LG+ +Q + +EK + + S++ + ++ P+ + F Sbjct: 9 LRAARINNGMSQKKAASLLGVHYQTLASWEKDSSDLSRSKMLLMEKIYSIPLEYIF 64 >gi|270261649|ref|ZP_06189922.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] gi|270045133|gb|EFA18224.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] Length = 187 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ + ++ R G S + E G++ + + E+G + + L I+ S F Sbjct: 7 HLAQTLKSLRAQRGWSLAQAAENTGVSKAMLGQIERGESSPTVATLWKIATGFNVAFSAF 66 Query: 74 FDVSPTVCSDISS 86 ++SP Sbjct: 67 LEISPLQEQATLH 79 >gi|257875245|ref|ZP_05654898.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257809411|gb|EEV38231.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 204 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 6/79 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R+ LG++Q+++ E L +T Q + +E + L +S++ + Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQI---- 56 Query: 73 FFDVSPTVCSDISSEENNV 91 D+ + + +EE + Sbjct: 57 --DLESLLKPEQLAEEPEI 73 >gi|238894952|ref|YP_002919686.1| putative regulator [Klebsiella pneumoniae NTUH-K2044] gi|238547268|dbj|BAH63619.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 193 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ + RIR+ R G S L E G + + K E+G + AS L +S Sbjct: 4 IEDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|225873562|ref|YP_002755021.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793885|gb|ACO33975.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 63 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ L + LG++ Q V E G ++ + PI F Sbjct: 3 NRLRDLRAERGWSQADLAQELGVSRQSVNAIETGRFDPSLPLAFKLARLFGEPIEKIF 60 >gi|209519410|ref|ZP_03268207.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209500149|gb|EEA00208.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 212 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 28/77 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 75 DVSPTVCSDISSEENNV 91 S +++ Sbjct: 95 AQPKPPEVIAVSGPHDI 111 >gi|167912242|ref|ZP_02499333.1| DNA-binding protein [Burkholderia pseudomallei 112] Length = 195 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVSPTV 80 ++ F+ Sbjct: 62 LASLFEDDRAA 72 >gi|152970466|ref|YP_001335575.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330003695|ref|ZP_08304714.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|150955315|gb|ABR77345.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328536870|gb|EGF63173.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 193 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ + RIR+ R G S L E G + + K E+G + AS L +S Sbjct: 4 IEDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|153816351|ref|ZP_01969019.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|317501012|ref|ZP_07959220.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089033|ref|ZP_08337939.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846312|gb|EDK23230.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|316897590|gb|EFV19653.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|330406233|gb|EGG85752.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+ I R MSQE+ + +T Q + +EK N L IS+ P+ Sbjct: 1 MKIGETILKLREEKKMSQEEFAQYYHVTRQTISNWEKEKNYPDLQTLVKISDESGVPLD 59 >gi|15612927|ref|NP_241230.1| transcriptional regulator [Bacillus halodurans C-125] gi|10172977|dbj|BAB04083.1| transcriptional regulator [Bacillus halodurans C-125] Length = 66 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ RM + M+QE+L +G+T Q + EKG I++ L + F Sbjct: 3 NNVKQTRMNMSMTQEQLARKVGVTRQTIGLIEKGEYNPSLQLCVAIAKNLHKTLDDLF 60 >gi|83944600|ref|ZP_00957050.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. EE-36] gi|83844577|gb|EAP82464.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. EE-36] Length = 94 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R+ M+ ++L E G++ + + E+G V + I+ +L P F+ Sbjct: 2 GLMIRAARLERNMTAQELAERAGVSRPLLSRVERGDMTVSLGAVFEIATILGVP---LFE 58 Query: 76 VSPTVCSDISSEENNVMDFISTP 98 + E + Sbjct: 59 EDDERLTTRLGTERRTNALLRQR 81 >gi|314934399|ref|ZP_07841758.1| conserved domain protein [Staphylococcus caprae C87] gi|313652329|gb|EFS16092.1| conserved domain protein [Staphylococcus caprae C87] Length = 65 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R +SQ L +G++ Q + E +I++ L ++ F Sbjct: 2 NRVKQYRAHQKISQLALARAVGVSRQTINMIENDRYNPSLKLCINIAKELNVTLNDLF 59 >gi|311067740|ref|YP_003972663.1| Phage PBSX transcriptional regulator [Bacillus atrophaeus 1942] gi|310868257|gb|ADP31732.1| Phage PBSX transcriptional regulator [Bacillus atrophaeus 1942] Length = 113 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 16/120 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 2 IGGRLKSLRGKK--TQEEIANHIGVSRARYSHYENGRSEPDYETLQKLADYFQVTTDYLL 59 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEKK 132 D D S P L + + D + +Q+ IE + + EK Sbjct: 60 TGKEKKSDD---------DIFSDP---DLQIAYRDMRDFSPESKQQAIEFINYLKEKEKN 107 >gi|257053231|ref|YP_003131064.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256691994|gb|ACV12331.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 75 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ L E + +T Q + E + ++ E P+ F Sbjct: 5 LTEYREASGLSQRALAEHVAVTRQTINAVEGNRYDPSVELVFKLAAFFEVPVEDLF 60 >gi|240949823|ref|ZP_04754152.1| hypothetical protein AM305_01724 [Actinobacillus minor NM305] gi|240295740|gb|EER46435.1| hypothetical protein AM305_01724 [Actinobacillus minor NM305] Length = 186 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++IR R +QE++ L ++ Q K E+G R RL+ ISEV + Sbjct: 58 EKIRQLREARQWTQEEMATKLSMSTQGYAKIERGDTRSNLDRLEQISEVFGIDM 111 >gi|228952478|ref|ZP_04114559.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807215|gb|EEM53753.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 68 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK++ L R G SQ +L + L + V E G + S+L +SEV + P+ F Sbjct: 6 GKKLSLLRKNKGFSQRELAQLLNCSHSLVNLMENGKIQPTTSKLLGMSEVFKIPMDDLF 64 >gi|254393692|ref|ZP_05008816.1| hypothetical protein SSCG_06155 [Streptomyces clavuligerus ATCC 27064] gi|294815970|ref|ZP_06774613.1| HTH_3 domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|197707303|gb|EDY53115.1| hypothetical protein SSCG_06155 [Streptomyces clavuligerus ATCC 27064] gi|294328569|gb|EFG10212.1| HTH_3 domain-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 409 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 15/123 (12%) Query: 15 VGKRIRLRRMILGMSQEKLG----ECLG-----ITFQQVQKYEKGVNRVGASRLQHISEV 65 +G IR RR G +Q +L G ++ Q++ ++E G R L ++ V Sbjct: 73 IGANIRHRRKQRGWTQARLAWELCRAAGVQGEPVSTQEITRWEAGR-RTPRDWLPFLAAV 131 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---QKIIEL 122 L + + + S + + P R +I + VR Q++ L Sbjct: 132 LGVSVEVLTGPPVPPEAAMLSLAGYLPE--GDPLAPLSARNGRRIGEGVVRDLHQRVHGL 189 Query: 123 VRS 125 R+ Sbjct: 190 RRA 192 >gi|311747920|ref|ZP_07721705.1| putative transcriptional regulator [Algoriphagus sp. PR1] gi|126575914|gb|EAZ80224.1| putative transcriptional regulator [Algoriphagus sp. PR1] Length = 192 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N V + +I+ R ++ + + + G+T + + E G L I + L Sbjct: 1 MENEVVAQISNKIKSVRKEKSLTLQDIADRAGVTKGLISQIENGRTIPSLLVLIEIIQAL 60 Query: 67 ESPISFFFDVSPTVCSDI 84 E FF S Sbjct: 61 EVDFDSFFTELSKFSSGT 78 >gi|89055187|ref|YP_510638.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864736|gb|ABD55613.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 440 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 11/98 (11%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS-----------R 58 P D G RIR RR+ +G+ Q L E +G++ + E ++G Sbjct: 8 PDDHLTGSRIRERRLAMGLKQGVLAEIVGVSPSYLNLIEHNHRKIGGKLLLALARALEVE 67 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS 96 ++E +++ IS D + D+ +E V + ++ Sbjct: 68 ASALTEGVDAGISELLDAAARALGDVPAETARVDELVA 105 >gi|57233927|ref|YP_182049.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57224375|gb|AAW39432.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 69 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R+ R I ++QE+L + LGIT Q V E G I+ + ++PI F Sbjct: 3 NKLRVLRAIHNLTQEELADKLGITRQTVIAIEWGKYSPSLELAFKIASLFKAPIEEIF 60 >gi|16264601|ref|NP_437393.1| MerR/LacI family transcriptional regulators [Sinorhizobium meliloti 1021] gi|307303541|ref|ZP_07583295.1| transcriptional regulator, MerR family [Sinorhizobium meliloti BL225C] gi|307318608|ref|ZP_07598041.1| transcriptional regulator, MerR family [Sinorhizobium meliloti AK83] gi|15140739|emb|CAC49253.1| putative protein, similar to transcriptional regulators merR and LacI family [Sinorhizobium meliloti 1021] gi|306895635|gb|EFN26388.1| transcriptional regulator, MerR family [Sinorhizobium meliloti AK83] gi|306902932|gb|EFN33524.1| transcriptional regulator, MerR family [Sinorhizobium meliloti BL225C] Length = 276 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ VG+++R R G + E++ +GI + E+ V + L +++E + +S Sbjct: 97 DMQVGRKLRSLRHAAGKTLEQVAGDIGIAASVLSTLERTSQGVSVAVLHNLAEYFGTTVS 156 >gi|17547851|ref|NP_521253.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430156|emb|CAD16841.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 209 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R G + + L G++ + E+G A L ++ L + Sbjct: 16 INERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAASPTAVVLDKLAAGLGVSL 75 Query: 71 SFFFDVS 77 + F Sbjct: 76 ASLFGGE 82 >gi|89100494|ref|ZP_01173355.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89084760|gb|EAR63900.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 71 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R + G +QE + LG++ + + E+G + ++ VL+ I + Sbjct: 7 GRRIRAFRKLKGFTQESFAKELGVSVSVLGEIERGNRMPADDFIVQVAHVLKISIE---E 63 Query: 76 VSPTVCSD 83 ++PT D Sbjct: 64 LTPTQEID 71 >gi|326387341|ref|ZP_08208951.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326208522|gb|EGD59329.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ R G++QE++ E G + Q + E+G L +S L Sbjct: 5 KLVGRNFARLRRDRGLTQEQVAERSGFSQQYLSNLERGWRNPTVITLYELSLALGVS 61 >gi|311108201|ref|YP_003981054.1| hypothetical protein AXYL_05033 [Achromobacter xylosoxidans A8] gi|310762890|gb|ADP18339.1| helix-turn-helix family protein 11 [Achromobacter xylosoxidans A8] Length = 302 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 10/97 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R I GM+++ L + G++ + + E GV L I+ Sbjct: 19 VALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILVLLQIARAFNC---- 74 Query: 73 FFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY 106 + D+++E + + + +S L R Sbjct: 75 ---ALAELVGDVTTESPDWLLIRELLSGRTESDLQRA 108 >gi|295105803|emb|CBL03346.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 67 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ R G+ QE L LG++ Q + EKG I+ + I F Sbjct: 3 NRLEEIRKARGIKQEDLATELGVSRQTISSLEKGRYNPSILLAFKIARHFDLSIEDVF 60 >gi|293378376|ref|ZP_06624545.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292643240|gb|EFF61381.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 370 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 6 LSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVD 62 >gi|257880759|ref|ZP_05660412.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|260562583|ref|ZP_05833091.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|257814987|gb|EEV43745.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|260073093|gb|EEW61440.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 306 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 13/116 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT--FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR R ++ E+ G+ T + +E G N + R++ I+E+ + Sbjct: 175 IGQRIRKIRKKENITLEEFGKLFSPTADKAVISNWENGKNLPNSERIKKIAEIGGVSELY 234 Query: 73 FFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFI-------QIDDVKVRQ 117 + ++ +S + ++ +S + ++ F +IDD R+ Sbjct: 235 LMTGVDSSVAESMYFLSEVALDALERLSIEEVNRIIESFAGYLNVISKIDDPDKRE 290 Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G RI+ R G + LG+ + + + +EKG N RL+ I+ + + + + Sbjct: 17 GNRIKQIREKHGYTMADLGKLVDANSPSTINNWEKGNNLPNRKRLEKIALLGGTSVEW 74 >gi|167772036|ref|ZP_02444089.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM 17241] gi|167665834|gb|EDS09964.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM 17241] Length = 96 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLES 68 N+G RI+ R GMSQE+L E +++ + E + L I+ L Sbjct: 31 KNIGFRIQFFRKKCGMSQEELAEKSNLSYSTISHIESTSTYPMSIIALYRIAAALNI 87 >gi|161620977|ref|YP_001594863.1| hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|254703244|ref|ZP_05165072.1| hypothetical protein Bsuib36_04804 [Brucella suis bv. 3 str. 686] gi|260567822|ref|ZP_05838291.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261753875|ref|ZP_05997584.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|161337788|gb|ABX64092.1| Hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|260154487|gb|EEW89568.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261743628|gb|EEY31554.1| transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 182 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF + P + + +++ Sbjct: 59 GMVEFFALEPDAPHRVFYQAEELVEI 84 >gi|149920158|ref|ZP_01908630.1| transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149818924|gb|EDM78363.1| transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 113 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G R+R RR LG+SQEKL E ++ + + + E+G ++ ++ L +S Sbjct: 17 LGDRVRERRRELGLSQEKLAEKAQVSKETIGRLEQGGGTPSLFTVRKVANALGETVS 73 >gi|52078575|ref|YP_077366.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|319648604|ref|ZP_08002818.1| transcriptional regulator [Bacillus sp. BT1B_CT2] gi|52001786|gb|AAU21728.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|317389371|gb|EFV70184.1| transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 69 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE + LGI+ + + E+G S L+ ++ L + Sbjct: 7 GRRIRAYRKLKGYTQEGFAKALGISVSVLGEVERGNRMPTESMLRDVANTLNITV 61 >gi|27376780|ref|NP_768309.1| hypothetical protein bll1669 [Bradyrhizobium japonicum USDA 110] gi|27349922|dbj|BAC46934.1| bll1669 [Bradyrhizobium japonicum USDA 110] Length = 108 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 46/111 (41%), Gaps = 17/111 (15%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++ ++L G++ + + E + + R +L +++ L + + Sbjct: 11 RIKTLRKKAKLTLDQLAPQAGLSKSYLWELENRDLPRPSGEKLAGLAKALNVTVDYLLGG 70 Query: 77 SPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 PT + + ++ ++ + +P+ ++R+ L +++ Sbjct: 71 DPTENLETAEDKAFFREYEAMSPEAR-----------AQLRR----LAKAL 106 >gi|77405440|ref|ZP_00782533.1| cI-like repressor [Streptococcus agalactiae H36B] gi|77175933|gb|EAO78709.1| cI-like repressor [Streptococcus agalactiae H36B] Length = 69 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG++IR +R + ++Q +L + L Q V E G R L + ++ + F Sbjct: 6 FVGEQIRHQRKLAKLTQSQLADLLETNQQTVGMMENGRRRTTIQDLVKLCKIFNASADDF 65 >gi|126438464|ref|YP_001060149.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126217957|gb|ABN81463.1| DNA-binding protein [Burkholderia pseudomallei 668] Length = 195 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L + Sbjct: 3 INQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSL 62 Query: 71 SFFFDVSPTV 80 + F+ Sbjct: 63 ASLFEDDRAA 72 >gi|313116063|ref|ZP_07801487.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621660|gb|EFQ05191.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 148 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+I + + I RM G +Q+ L + + + V ++E G L I++ L + Sbjct: 30 VNIQIQQMIHDTRMAKGWTQKDLADKMRVKQSLVSRWESGDCNYTIDTLIDIADALGLSV 89 >gi|260550053|ref|ZP_05824267.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406808|gb|EEX00287.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 197 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 P++ F T S N P+ Sbjct: 62 PLTKIFTNETTSPSPQPFICRNEQAEWQDPET 93 >gi|300767756|ref|ZP_07077666.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494741|gb|EFK29899.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 183 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 I +G +I+ +R SQ+ + E L ++ Q + K+E G + L +S++ Sbjct: 3 IVIGTKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFAVS 59 >gi|255281263|ref|ZP_05345818.1| conserved domain protein [Bryantella formatexigens DSM 14469] gi|255268220|gb|EET61425.1| conserved domain protein [Bryantella formatexigens DSM 14469] Length = 121 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 16 GKRIRLRRMILGMSQEKLGEC-----LGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G +IR R +SQE+L L I + + + E G + L +IS+VL I Sbjct: 45 GCKIRELRKKSNLSQEQLAAKLQLAGLNINQKAISRIETGDRVIPDFELLYISKVLSCSI 104 Query: 71 SFFFDVSPTVCSDISS 86 S + +IS Sbjct: 105 STLLEADENENKEISG 120 >gi|255284008|ref|ZP_05348563.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265461|gb|EET58666.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK++R R ++Q ++ L I YE L I++ P+ + Sbjct: 6 LGKKLRALRERRHLTQAEVSALLHIERAAYSNYENDKRIPSFETLLLIADFYGVPVEYL 64 >gi|210615280|ref|ZP_03290495.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] gi|210150392|gb|EEA81401.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] Length = 252 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + R M+Q+ L + L ++ + V K+E+G + + L I++VL ++ Sbjct: 10 GQFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVTELLQ 69 Query: 76 VSPTVCSDISSEE 88 + + + Sbjct: 70 GEKLKENKTLNSD 82 >gi|183601514|ref|ZP_02962884.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219683947|ref|YP_002470330.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|241190987|ref|YP_002968381.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196393|ref|YP_002969948.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219120|gb|EDT89761.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219621597|gb|ACL29754.1| predicted transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|240249379|gb|ACS46319.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250947|gb|ACS47886.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793976|gb|ADG33511.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis V9] Length = 335 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L +G++ Q V K+E +L + ++ + V Sbjct: 6 NLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKAYPEMDKLLMLCDMFGVSLDDL--VM 63 Query: 78 PTVCSDISSEENNVMDFI 95 V + I+ N+V D + Sbjct: 64 GDVRNGIAMSANHVEDGL 81 >gi|270307913|ref|YP_003329971.1| DNA-binding protein [Dehalococcoides sp. VS] gi|270153805|gb|ACZ61643.1| DNA-binding protein [Dehalococcoides sp. VS] Length = 67 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q +L E +G++ Q + EKG +++ L + I F Sbjct: 6 RIKELRSRYNLTQAELAETVGVSRQTMLYLEKGTYNPSLILAHKVAKALHADIDDVF 62 >gi|134101965|ref|YP_001107626.1| hypothetical protein SACE_5483 [Saccharopolyspora erythraea NRRL 2338] gi|133914588|emb|CAM04701.1| hypothetical protein SACE_5483 [Saccharopolyspora erythraea NRRL 2338] Length = 11792 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 26/68 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +G +Q ++ E +G+ + +E G + + + ++ F Sbjct: 5560 RLKRERARVGRTQREVAEKIGVHLSTLSNWEHGRDNIAPRHRERLAAFYGVSQEELFADM 5619 Query: 78 PTVCSDIS 85 P + Sbjct: 5620 PEASGETG 5627 Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FFFDVS 77 +R R +G +Q + E L ++ V +E G + + + + + FD Sbjct: 7836 LRQAREAMGWTQAYVAEKLEVSSNTVSNWETGKTPMRSGDRESLRVLYGRSTDETLFDGL 7895 Query: 78 PTVCSDISSEENNVMD 93 P V I + E++ + Sbjct: 7896 PPVSDGIQAPESSRHE 7911 Score = 38.3 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVL--ESPISFFFD 75 +R R +G ++ + E L ++ V +E G + R I VL S FD Sbjct: 7972 LRQAREAMGWTRAYVAEKLEVSSDTVSNWETGKTPMRSGDR--EILRVLYGRSTDETLFD 8029 Query: 76 VSPTVCSDISSEENNVMD 93 P V I + E++ + Sbjct: 8030 GLPPVSDGIQAPESSRHE 8047 Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 8 PNPVDINVGKRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+PV + +G ++R R +Q + I + +YE G +R + + E+ Sbjct: 2887 PSPVRVVLGNKLRDLREAARFETQAAAAKQSNIKVRSFSRYESGSRVPDPARTEALLELY 2946 Query: 67 ES 68 Sbjct: 2947 GV 2948 Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR R R + G + +G+T + ++EKG + + ++ F Sbjct: 5497 KRARGGRTLRG-----VARAIGVTHSTLSRWEKGRGDIDPHYRERLAAFYGVSQEELFAD 5551 Query: 77 SPTVCSDI 84 P + Sbjct: 5552 IPEASGET 5559 Score = 37.9 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P + +G ++R R +Q + I + +YE G +R + + E+ Sbjct: 2802 PSPERVVLGNKLRALREAKFETQTDAAKQSNIKAVSIGRYESGSRVPDPARTEALLELYG 2861 Query: 68 S 68 Sbjct: 2862 V 2862 Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 8 PNPVDINVGKRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGV 51 P+P + +G ++R R +Q + L IT + +YE GV Sbjct: 2717 PSPARVVLGNKLRALREAARFETQAAAAKQLNITAMGIGRYESGV 2761 Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G ++R R +Q + L T + +YE G + R + + E+ Sbjct: 2636 VELGNKLRALREAARFETQAAAAKQLRKTPSRFSEYESGSQVPSSGRTKALLELYGV 2692 Score = 34.0 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 22/62 (35%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 L+R G + ++ + +T + ++E G + + ++ F P Sbjct: 5628 LKRARGGRTLREVASAIEVTSATLSRWEHGRGDIDPHYRERLAAFYGVSQEVLFADMPPE 5687 Query: 81 CS 82 S Sbjct: 5688 GS 5689 >gi|163943401|ref|YP_001642631.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|228925002|ref|ZP_04088132.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|163865598|gb|ABY46656.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228834665|gb|EEM80174.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 66 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G +Q+ LGE +G + Q + E+ I++ P+ F+ Sbjct: 4 NRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAQAFGKPLEEVFEF 63 Query: 77 SPT 79 Sbjct: 64 KEE 66 >gi|91975357|ref|YP_568016.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681813|gb|ABE38115.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris BisB5] Length = 317 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 35/70 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R + GMS++ L + GI+ + + + E G V L+ +S+ L +P+ Sbjct: 25 LELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIILLRRVSDALATPLED 84 Query: 73 FFDVSPTVCS 82 S Sbjct: 85 LLPNSDPSID 94 >gi|94152474|ref|YP_581881.1| putative transcriptional regulator Cro/CI family [Cupriavidus metallidurans CH34] gi|93358844|gb|ABF12931.1| putative transcriptional regulator Cro/CI family [Cupriavidus metallidurans CH34] Length = 233 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R + ++Q ++ + LG++ ++E G V +++ +SE L + + P Sbjct: 7 MKRARRLARLTQSEIAKRLGLSQSTYHRWESGEIEVPEAKVISLSEALGVSVEYL-RGQP 65 Query: 79 TVCSDISSEENNVMD 93 +E D Sbjct: 66 EPFDIEGMDEQLPAD 80 >gi|25012032|ref|NP_736427.1| hypothetical protein gbs1994 [Streptococcus agalactiae NEM316] gi|77413860|ref|ZP_00790038.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|24413575|emb|CAD47653.1| Unknown [Streptococcus agalactiae NEM316] gi|77160100|gb|EAO71233.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 358 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I L+R +GM+QE L + L +T + K+E + L ++ + + + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLV 61 Query: 75 DVSPTVCSD 83 T+ D Sbjct: 62 GYQKTLSDD 70 >gi|329666835|gb|AEB92783.1| hypothetical protein LJP_0449 [Lactobacillus johnsonii DPC 6026] Length = 275 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG+SQ ++ + +T K E+G++ + AS L I E+ + IS Sbjct: 1 MTIGEALKETRKNLGLSQTEMAYPI-LTKSYYSKIERGIHEINASDLIKILEIHDVDISE 59 Query: 73 F 73 F Sbjct: 60 F 60 >gi|325288497|ref|YP_004264678.1| phage repressor like transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324963898|gb|ADY54677.1| phage repressor like transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 201 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G I+ R+ G++QE+LG +G+ V K+E G V + S ++ +S + Sbjct: 4 GDLIKQLRLKKGLTQEELGNLIGVKRAAVNKWETGSVENLKRSTIEKLSAIFGVSPIQLL 63 Query: 75 DVSPTVCSDI 84 ++ D+ Sbjct: 64 GLTEAEPRDV 73 >gi|319937023|ref|ZP_08011433.1| hypothetical protein HMPREF9488_02267 [Coprobacillus sp. 29_1] gi|319807959|gb|EFW04538.1| hypothetical protein HMPREF9488_02267 [Coprobacillus sp. 29_1] Length = 228 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI-- 62 KK VG+R++ RR L ++ +LG+ +G+ +Q+YE + V R I Sbjct: 2 KKEITFTAKQVGERVKERRTELNLTMPELGKRVGVNKSTIQRYE--ADGVDPKRTMIING 59 Query: 63 -SEVLESPISFFFDVSPTVCSD 83 +E L + + +S D Sbjct: 60 LAEALLTTPEWLTGLSEDKEYD 81 >gi|302189655|ref|ZP_07266328.1| e14 prophage; putative phage repressor [Pseudomonas syringae pv. syringae 642] Length = 138 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R++ R G SQ L + G + Q +V YE G ++ +++ L P Sbjct: 26 QRLQRLRNAAGKSQAALAKLCGWSSQSRVGNYESGTREPTLGDIELMAKALGVPYGVLLI 85 Query: 76 VSP-TVCSDISSEENNVMD 93 + SE +N+ + Sbjct: 86 GEDAAAATRALSEPSNIAE 104 >gi|299134081|ref|ZP_07027274.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298590828|gb|EFI51030.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 230 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D +G+RIR R + + + L + +G+T + K E G L +++ Sbjct: 35 KGEQEIDT-LGRRIRQLRKMQERTLDSLAQEVGLTKGYLSKVETGRQTPPLGTLSKLAKA 93 Query: 66 LESPISFFFDVSPTVCSDISSEENNVM 92 L + ++ + S+ E +V+ Sbjct: 94 LGTDLAGLVENGAGERSEPGYEGVSVV 120 >gi|288559490|ref|YP_003422976.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288542200|gb|ADC46084.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 80 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 IR R + MSQ+ L + G+T Q + E G +I+ +L Sbjct: 5 IRYLRQEVKMSQQDLAKSAGVTRQTINALENGRYNPSLLLAYNITRILN 53 >gi|253751129|ref|YP_003024270.1| transcriptional regulator [Streptococcus suis SC84] gi|253753030|ref|YP_003026170.1| transcriptional regulator [Streptococcus suis P1/7] gi|253754853|ref|YP_003027993.1| transcriptional regulator [Streptococcus suis BM407] gi|251815418|emb|CAZ50993.1| putative transcriptional regulator [Streptococcus suis SC84] gi|251817317|emb|CAZ55049.1| putative transcriptional regulator [Streptococcus suis BM407] gi|251819275|emb|CAR44574.1| putative transcriptional regulator [Streptococcus suis P1/7] Length = 285 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPIS 71 + + KR + RR LG +Q++L E GI Q + + EK + L +S+ L+ + Sbjct: 1 MILSKRFKNRRKELGFTQKELAE--GICEQSLISRVEKLGVAPTSDILFALSQRLQVSMD 58 Query: 72 FFFDVS 77 +FFD S Sbjct: 59 YFFDES 64 >gi|229100270|ref|ZP_04231161.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] gi|229103092|ref|ZP_04233779.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|229119062|ref|ZP_04248402.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228664391|gb|EEL19892.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228680281|gb|EEL34471.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|228683165|gb|EEL37152.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] Length = 292 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R +SQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNISQSELCRGI-CSQSQISKIEKGIIYPSSILLYQLSERLGVDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|226309623|ref|YP_002769517.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226092571|dbj|BAH41013.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 132 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 VG+RI+ R SQ +L E LGI + + E G + V A + ++++ E F Sbjct: 18 VGQRIKWLREQKQWSQLQLAEKLGIHNTVLSRIESGEKKGVDAHLISKVADLFEVSTDFL 77 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 + S F+ Sbjct: 78 HGRTEEPSWQRGSVRETPATFL 99 >gi|260587016|ref|ZP_05852929.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] gi|260542638|gb|EEX23207.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] Length = 120 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R G+SQ++LG LG++ Q + K+E + RL +S+ + Sbjct: 5 EKLIELRKSKGLSQDELGNALGVSRQTISKWELAQSYPDFQRLVLLSDYFGLSLD 59 >gi|221194917|ref|ZP_03567973.1| conserved domain protein [Atopobium rimae ATCC 49626] gi|221184820|gb|EEE17211.1| conserved domain protein [Atopobium rimae ATCC 49626] Length = 65 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+ Q + LGI+ Q YEK ++ + + + + L + +S F Sbjct: 3 RLKEYREAKGVKQSAVAAKLGISRQTYSFYEKNQEKMTFEQAKIVCDFLGTRVSDIF 59 >gi|212711417|ref|ZP_03319545.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM 30120] gi|212685873|gb|EEB45401.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM 30120] Length = 189 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 26/78 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K + R GMS +L GI + + E G L + L+ P S Sbjct: 14 ISKSLACERQKSGMSLSELARKAGIAKSTLSQLEAGSGNPSIETLWALCVALDIPFSRLI 73 Query: 75 DVSPTVCSDISSEENNVM 92 + + I E + Sbjct: 74 EEKRAAVTVIRHGEGTPV 91 >gi|190573886|ref|YP_001971731.1| putative phage-like protein [Stenotrophomonas maltophilia K279a] gi|190011808|emb|CAQ45428.1| putative phage-related protein [Stenotrophomonas maltophilia K279a] Length = 378 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R + M+ LG +T Q + ++E G L I+ L+ PI FF Sbjct: 8 RRLKQARALRRMTLADLGARTDVTRQGLSQFENGDRVPAPETLLRIAAELDFPIEFF 64 >gi|170760185|ref|YP_001785975.1| cupin domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169407174|gb|ACA55585.1| cupin domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 183 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EK + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKSDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFD 75 + + Sbjct: 63 TLLLE 67 >gi|169633695|ref|YP_001707431.1| putative transcriptional regulator [Acinetobacter baumannii SDF] gi|169152487|emb|CAP01455.1| putative transcriptional regulator [Acinetobacter baumannii] Length = 197 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 P++ F S N P+ Sbjct: 62 PLTQIFTNEAGNSSSQPLICRNEQAEWRDPET 93 >gi|169828385|ref|YP_001698543.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992873|gb|ACA40413.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 194 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R MS E+L ++ + K E+G + L I L P+ Sbjct: 21 QVGMNLREIRKNKRMSLEELASVSNVSKLTLGKIERGETNPTVNILWKICRGLHIPL 77 >gi|167764135|ref|ZP_02436262.1| hypothetical protein BACSTE_02518 [Bacteroides stercoris ATCC 43183] gi|167698251|gb|EDS14830.1| hypothetical protein BACSTE_02518 [Bacteroides stercoris ATCC 43183] Length = 123 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G++++L R+ ++QE++ E L ++ K E G + +RL I++VL F Sbjct: 10 GQQLQLLRLEKNLTQEQMSEKLNLSTSAYCKIEYGETDLTLTRLDKIAKVLGISALSLFS 69 Query: 75 --DVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDD 112 D S +D S + N+ D + L +L + +I D Sbjct: 70 YIDKSMNPNTDNSCKNNSNNDSAYDLNDLRELIKANTRIID 110 >gi|167580827|ref|ZP_02373701.1| DNA-binding protein [Burkholderia thailandensis TXDOH] Length = 278 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DVNPLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVS 61 Query: 70 ISFFFDVSPTVCSDISSEENNV 91 ++ F+ + E V Sbjct: 62 LASLFEDDRAASPLSRAAEQPV 83 >gi|318061628|ref|ZP_07980349.1| hypothetical protein SSA3_27058 [Streptomyces sp. SA3_actG] Length = 77 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIR R+ ++QE L E G+ + + + E G + + I+ L P++ Sbjct: 15 RAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIARALGRPLAD 74 Query: 73 F 73 Sbjct: 75 L 75 >gi|313898624|ref|ZP_07832159.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956508|gb|EFR38141.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 112 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D ++G I+ ++ M+Q++L + L I+ Q + Y L IS++L Sbjct: 4 NQIDTDLGAAIKEGIILNNMTQKQLAKALHISQQTLSCYIHNQRTPNIHDLVAISQILNL 63 Query: 69 PISFFFDVSPTVCSDISS 86 I + + + Sbjct: 64 DIYVLLGLKKDIPDHLDH 81 >gi|227530294|ref|ZP_03960343.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227349771|gb|EEJ40062.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 203 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G++I+ RR L ++Q ++ E +T Q V +E + L IS V + + Sbjct: 1 MKFGEQIKERRQELDLTQAEVAEKYFVTRQAVSNWEHDKTYPDLNMLVKISNVYQISLD 59 >gi|261345691|ref|ZP_05973335.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566177|gb|EFB71712.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 84 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + +G +IRL+R MS ++ + +G++ ++ ++E G + + L + + Sbjct: 2 NKNEIAKKLGVKIRLQRESHKMSLQQAAKLIGVSVDEMNRFENGESCIDVDSLFQFAYLF 61 Query: 67 ES-PISFFF 74 P SF + Sbjct: 62 NLEPASFLY 70 >gi|167720910|ref|ZP_02404146.1| DNA-binding protein [Burkholderia pseudomallei DM98] Length = 195 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVSPTV 80 ++ F+ Sbjct: 62 LASLFEDDRAA 72 >gi|86130705|ref|ZP_01049305.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134] gi|85819380|gb|EAQ40539.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134] Length = 66 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R IL ++Q+ L + +G++ Q + EK +S + P++ FF ++ Sbjct: 5 LKVERAILDLTQDDLAKKIGVSRQTINSIEKNRYVPSTVLALKLSALFNKPVNDFFKLTE 64 Query: 79 T 79 Sbjct: 65 E 65 >gi|22538172|ref|NP_689023.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76798585|ref|ZP_00780814.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|22535081|gb|AAN00896.1|AE014283_15 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76586050|gb|EAO62579.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] Length = 358 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I L+R +GM+QE L + L +T + K+E + L ++ + + + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLV 61 Query: 75 DVSPTVCSD 83 T+ D Sbjct: 62 GYQKTLSDD 70 >gi|326803106|ref|YP_004320924.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651536|gb|AEA01719.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 115 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ +R + +SQ +L L T Q V +E + L +S + + P+ Sbjct: 1 MKIGQIIKEQRELNNISQGQLASYLKTTQQTVSNWENNKSYPNVENLILLSSIFDQPME- 59 Query: 73 FFDVSPTVCSDISSEENNVM 92 ++ DIS V+ Sbjct: 60 --ELLNEDIRDISEATGRVI 77 >gi|331673630|ref|ZP_08374393.1| putative transcription regulator [Escherichia coli TA280] gi|331068903|gb|EGI40295.1| putative transcription regulator [Escherichia coli TA280] Length = 154 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+R++ R+ +G+SQE + G + + E+G + ++ +++ L Sbjct: 10 GQRVKEFRIAIGLSQEAFADRCGFARSYMSRIERGCSNASLDAIEVLADALRI 62 >gi|300783935|ref|YP_003764226.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793449|gb|ADJ43824.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 74 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 9/82 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV ++ N +R R G M+Q L +G+T Q V E+G Sbjct: 1 MVKPTRVTNS--------LRALRFAHGQMTQADLATRIGVTRQTVIAIEQGRYSPSLEMA 52 Query: 60 QHISEVLESPISFFFDVSPTVC 81 I+ V P+ F Sbjct: 53 FQIAHVFGVPLEEVFQYPEETS 74 >gi|296876453|ref|ZP_06900504.1| possible transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432446|gb|EFH18242.1| possible transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 108 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + KRIR+ R GM+QE+L E + K E + S L+ I + L + Sbjct: 6 KYISKRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIDALNVDLQT 65 Query: 73 FFDV 76 FFD+ Sbjct: 66 FFDL 69 >gi|292670745|ref|ZP_06604171.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292647366|gb|EFF65338.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 128 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPI 70 +N+ +RI+ R G++Q++LG + + Q + +E+G + + +S V P+ Sbjct: 1 MNISERIKYYRKENGLTQKELGFKINKSPQVISNWERGYTTTINQDDIVVLSGVFGIPV 59 >gi|253579633|ref|ZP_04856902.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849134|gb|EES77095.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 74 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI+ R MSQ++L E L I+ + YE G + L ++ + + + Sbjct: 7 QRIQDLRTDADMSQKQLSEILHISQRSYSHYETGSRNIPVEMLIRLANYYDISVDYL 63 >gi|195978222|ref|YP_002123466.1| hypothetical protein Sez_1101 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974927|gb|ACG62453.1| hypothetical protein Sez_1101 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 69 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L L ++ Q + E G + I+ + I F Sbjct: 3 NRLEEIRKQKGITQEELANALEVSRQTIGSLENGRYNPSITLAFKIARFFDLTIEQIFSD 62 Query: 77 SPTVCS 82 Sbjct: 63 EEDQNE 68 >gi|162147757|ref|YP_001602218.1| HTH-type transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209542381|ref|YP_002274610.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786334|emb|CAP55916.1| putative HTH-type transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530058|gb|ACI49995.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 80 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G+++ L E + + Q + E+G + I VL + F + Sbjct: 3 NRIAMFRAERGLTRRALAEAVEVNPQTIGYLERGDYKPSLELALKICRVLGVEVDMVFSL 62 Query: 77 SP 78 P Sbjct: 63 EP 64 >gi|90962813|ref|YP_536728.1| transcriptional regulator [Lactobacillus salivarius UCC118] gi|301299968|ref|ZP_07206194.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|90822007|gb|ABE00645.1| Transcriptional regulator [Lactobacillus salivarius UCC118] gi|300852423|gb|EFK80081.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 123 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + I R +SQ L + LG+ + K E G R+ + L +S+ + PI+ Sbjct: 7 DKVLKNNIISLRKKYHVSQIALADKLGVGRDAIIKLENGTRRLSINELIKLSDFFKVPIN 66 Query: 72 FFFDVSPTVCS 82 +S T Sbjct: 67 DLIGISKTAEQ 77 >gi|328958843|ref|YP_004373754.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] gi|328675167|gb|AEB31212.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] Length = 65 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R+ + ++Q++L E + +T Q + EKG +I + + F Sbjct: 3 NRIKVARIQVDLTQQQLAEKVDVTRQTISLIEKGKYNPSLKLCLNICHAVNKTLDELF 60 >gi|326331424|ref|ZP_08197714.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioidaceae bacterium Broad-1] gi|325950680|gb|EGD42730.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioidaceae bacterium Broad-1] Length = 508 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G IR R G++Q +L + L + + + E+G + + + L+ Sbjct: 9 IGNLIRDARKHKGLTQAQLADLLNTSQSAINRIEQGQQNLSLEMIARVGAALD 61 >gi|302384631|ref|YP_003820453.1| helix-turn-helix domain protein [Clostridium saccharolyticum WM1] gi|302195259|gb|ADL02830.1| helix-turn-helix domain protein [Clostridium saccharolyticum WM1] Length = 79 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG++++ R MSQ++L + L I + + E G V L +S++L P Sbjct: 13 VGEKVKQIRKNQEMSQQQLSDKLETLAIYICRGSISRIEDGSRTVTDIELFGLSKILNVP 72 Query: 70 ISFFFD 75 I F FD Sbjct: 73 IQFLFD 78 >gi|292557685|gb|ADE30686.1| Transcriptional activator [Streptococcus suis GZ1] gi|319757394|gb|ADV69336.1| Transcriptional activator [Streptococcus suis JS14] Length = 292 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPIS 71 + + KR + RR LG +Q++L E GI Q + + EK + L +S+ L+ + Sbjct: 8 MILSKRFKNRRKELGFTQKELAE--GICEQSLISRVEKLGVAPTSDILFALSQRLQVSMD 65 Query: 72 FFFDVS 77 +FFD S Sbjct: 66 YFFDES 71 >gi|229176555|ref|ZP_04303981.1| Transcription regulator [Bacillus cereus MM3] gi|228606911|gb|EEK64307.1| Transcription regulator [Bacillus cereus MM3] Length = 118 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R SQ++LGE + ++ V K E G + I+EV F S Sbjct: 8 RIKELRKERKWSQKELGEKVDVSESFVSKVESGKKQPSREVTAKIAEVFNVTTDFLLGRS 67 Query: 78 PTV 80 Sbjct: 68 DEA 70 >gi|219871029|ref|YP_002475404.1| transcriptional regulator/helix-turn-helix domain-containing protein [Haemophilus parasuis SH0165] gi|219691233|gb|ACL32456.1| transcriptional regulator/helix-turn-helix domain-containing protein [Haemophilus parasuis SH0165] Length = 129 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +NV ++IR R SQE++ E + ++ + E+G ++ +L+ I+++L+ I Sbjct: 1 MNVHEKIRKLRETKLWSQEQMAEKMNMSLNGYARIERGETKLHLDKLEQIAQILDVDI 58 >gi|163734588|ref|ZP_02142027.1| helix-turn-helix domain protein, putative [Roseobacter litoralis Och 149] gi|161392081|gb|EDQ16411.1| helix-turn-helix domain protein, putative [Roseobacter litoralis Och 149] Length = 135 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 11/129 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R M+Q +L LG+ ++ +E ++ A+RL ++ +L + + + Sbjct: 16 GDRLAAARETSEMTQAELARRLGVRVATLRSWENDLSEPRANRLSMMAGLLNVSMMWLIN 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E S + L R ++R ++ V + EKK R Sbjct: 76 GQGEGLDAPMEERTLPA---SASEVLNEMR--------ELRTDMMARVEQMGRLEKKLRL 124 Query: 136 IEEECMVEQ 144 + + ++ Sbjct: 125 ALRDGVDDR 133 >gi|89096738|ref|ZP_01169630.1| Helix-turn-helix domain protein [Bacillus sp. NRRL B-14911] gi|89088753|gb|EAR67862.1| Helix-turn-helix domain protein [Bacillus sp. NRRL B-14911] Length = 212 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 12/124 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K +G ++ +S KLG+ GI + K G + LQ Sbjct: 1 MAENSK-------EIGGLLKGLLKERSLSMRKLGQLAGIDPAVISKIVNGKRKATPEHLQ 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +E L PIS ++ + +++ L +++DVK Sbjct: 54 RFAEHLNVPISRLYEAAGYPLGPAPERNDSIGQIQDILKTAHLMDGEFRLEDVKE----- 108 Query: 121 ELVR 124 EL + Sbjct: 109 ELAK 112 >gi|88802521|ref|ZP_01118048.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] gi|88781379|gb|EAR12557.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] Length = 245 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK I+ R+I G+SQ+ E + + YE+G + L ++ I F Sbjct: 3 FFGKNIKKIRVIKGLSQQVFAELFSLKRATLGAYEEGRSEPKIDTLIKVANYFSISIDDF 62 >gi|330830558|ref|YP_004393510.1| Cro/CI family transcriptional regulator [Aeromonas veronii B565] gi|328805694|gb|AEB50893.1| Cro/CI family transcriptional regulator [Aeromonas veronii B565] Length = 177 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 40/89 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R LG+SQ + E G+T + E+ + LQ + + P+S FF Sbjct: 2 GERLAAVRHQLGLSQRRAAELSGLTHGAICMIEQDKVSPSVASLQKLLTIYGLPLSRFFA 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + + +++ S L+L Sbjct: 62 EEESRTPEVVIKADQLIELGSQGVSLKLV 90 >gi|325280366|ref|YP_004252908.1| helix-turn-helix domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324312175|gb|ADY32728.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM 20712] Length = 104 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G+ I+ R ++QE+LG +G+ Q+ + E G N I+ V + Sbjct: 37 IGEAIKQARQSKNLTQEELGNLIGVQRAQISRIENGKN----LTFSTIARVFK 85 >gi|312863201|ref|ZP_07723439.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100737|gb|EFQ58942.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 161 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 19/121 (15%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R +G+SQ +L + ++ + + ++EKG+ + +++ + +++ E + + Sbjct: 2 NNLKKLRQSIGLSQNELAKIFNVSEKTILRWEKGLTDIKSTKAEQLAKYFEVSVPYLLGF 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV--RSIVSSEKKYR 134 S N + + I D K ++IIE+V SI EK Y Sbjct: 62 SNY---------KNKFEVEIDNE--------NGILDNKFLERIIEVVGEESIPIIEKNYI 104 Query: 135 T 135 Sbjct: 105 E 105 >gi|317133164|ref|YP_004092478.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315471143|gb|ADU27747.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 197 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 33/75 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I R + ++Q +L L T + V K+E+ + S L+ ++ + + + Sbjct: 8 IAKNIVELRKLTNLTQAELAGKLHYTDKAVSKWERAESVPDISVLKELAVLFGVTVDYLL 67 Query: 75 DVSPTVCSDISSEEN 89 + + SS++ Sbjct: 68 ESEHPRKAAGSSKQK 82 >gi|289579258|ref|YP_003477885.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528971|gb|ADD03323.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 117 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++++ R G +Q ++ + GI + + YE G + + L+ ++ I +F Sbjct: 7 IGEKLKEVREKNGYTQAEVEKATGIKREMLSYYENGRREIDIATLEKLASFYGYSIEYF 65 >gi|225572811|ref|ZP_03781566.1| hypothetical protein RUMHYD_01002 [Blautia hydrogenotrophica DSM 10507] gi|291459464|ref|ZP_06598854.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] gi|225039868|gb|EEG50114.1| hypothetical protein RUMHYD_01002 [Blautia hydrogenotrophica DSM 10507] gi|291417921|gb|EFE91640.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 92 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 M+QE+L L +T Q + +E+ VN + L+ I + + F Sbjct: 1 MTQEELAGKLNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMDDF 46 >gi|223983684|ref|ZP_03633860.1| hypothetical protein HOLDEFILI_01141 [Holdemania filiformis DSM 12042] gi|223964381|gb|EEF68717.1| hypothetical protein HOLDEFILI_01141 [Holdemania filiformis DSM 12042] Length = 129 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 M+QE+L L +T Q + +E+ VN + L+ I + + F Sbjct: 1 MTQEELAGKLNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMDDF 46 >gi|199599682|ref|ZP_03213053.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258507137|ref|YP_003169888.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199589426|gb|EDY97561.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257147064|emb|CAR86037.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259648507|dbj|BAI40669.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 291 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 K+++ R M+Q L + L ++ V +E N + I+ + + Sbjct: 94 KQLQQIRTAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLD 148 >gi|159904716|ref|YP_001548378.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159886209|gb|ABX01146.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 192 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG +I+ R MS E+L + + ++ E G + L I+ L + F Sbjct: 6 HVGIKIKQTRERQNMSIEELAKASNSSVTLIESLENGDLVPSLTPLFKIARALGVRLGTF 65 Query: 74 FDVSPTVCS 82 D +P Sbjct: 66 LDDAPQNGP 74 >gi|71734040|ref|YP_276442.1| RtrR protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554593|gb|AAZ33804.1| RtrR protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|115265594|dbj|BAF32856.1| RtrR protein [Pseudomonas syringae pv. actinidiae] gi|115265646|dbj|BAF32907.1| RtrR protein [Pseudomonas syringae pv. phaseolicola] gi|330966722|gb|EGH66982.1| RtrR protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 76 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RIR +R +SQ+ L I + + E+G + +L I+ VL S Sbjct: 8 LGRRIRTQRKACQISQDALALACNIDRSYMGRIERGEVNITVEKLYRIAGVLACDPS 64 >gi|163942747|ref|YP_001647631.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864944|gb|ABY46003.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 73 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ LG+ +G + Q + E+G I+++ +P+ F + Sbjct: 5 NRVREFRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVEEIFTL 64 Query: 77 SPTVCSDIS 85 D Sbjct: 65 VEGEDGDEG 73 >gi|134298752|ref|YP_001112248.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051452|gb|ABO49423.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 18/110 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RIR+ R G+S +L G+ + E G + ++ I L ++ Sbjct: 1 MDIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAE 60 Query: 73 FF------------------DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF +V S +S +N +F T + L+L Sbjct: 61 FFNEGFMPCPYSSDINSLVNEVQNLKPSQVSLIKNIATEFSVTNEELELA 110 >gi|317407455|gb|EFV87415.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 202 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R M+ + L + GI + K E G + + ++ L ++ F Sbjct: 7 GARLRAERKARKMTLQDLSQASGIAVSTLSKAELGQIALSYEKFAALARALGIDMTRMFM 66 Query: 76 VSPTVCSDISS 86 + ++++ Sbjct: 67 LGDAAQAEVAP 77 >gi|317490202|ref|ZP_07948690.1| hypothetical protein HMPREF1023_02390 [Eggerthella sp. 1_3_56FAA] gi|316910696|gb|EFV32317.1| hypothetical protein HMPREF1023_02390 [Eggerthella sp. 1_3_56FAA] Length = 114 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 1 MVGNKKI--PNPV----DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 M N+K+ +P+ ++G R+ R G+SQ L E +G ++ E G+ V Sbjct: 14 MSKNEKMARKDPLVQRLSADLGSRLLEVRTSEGLSQNTLAEMVGTKHPRISNLEGGLVDV 73 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSD 83 S + ++ L+ D++ D Sbjct: 74 RLSDIVKLARALDVNPGELLDLAAYKLED 102 >gi|302545781|ref|ZP_07298123.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302463399|gb|EFL26492.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 469 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +P + + G RI R G++Q+ L ++ + K E G S + + Sbjct: 71 SMPRSNEEHTGARIARTRRERGLTQQGLAMRANVSKSLLSKVECGQKPASPSLIAACARA 130 Query: 66 LESPISFF 73 L S Sbjct: 131 LSVTTSDL 138 >gi|302381620|ref|YP_003817443.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192248|gb|ADK99819.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 70 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 10 PVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P+D ++R R + G M+Q +LG+ +G+T Q + E G I+ V Sbjct: 5 PID----NQVRTLRFLSGEMTQAELGDRIGVTRQTIAAIEAGKYAPSLEAAFRIARVFGK 60 Query: 69 PISFFF 74 P+ F Sbjct: 61 PLEEVF 66 >gi|260459627|ref|ZP_05807881.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034429|gb|EEW35686.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 199 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R + G++ ++ LG + + + E+G++ L+ +E+ PIS FF Sbjct: 25 IRALRRVRGLTLAEIALKLGRSVGWLSQVERGLSTPSVGDLRAFAELFGVPISLFFSHEV 84 Query: 79 TVCSD 83 V S+ Sbjct: 85 PVESE 89 >gi|254294734|ref|YP_003060757.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043265|gb|ACT60060.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 70 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R ++Q++L + +G+T Q + EKG I++ LE ++ F Sbjct: 11 IQELRKAKKLTQQELADAIGMTRQTIVAIEKGKYSPSLEAAFRIAQTLEQSLTDVF 66 >gi|313116911|ref|YP_004038035.1| transcriptional regulator, XRE family [Halogeometricum borinquense DSM 11551] gi|312294863|gb|ADQ68899.1| transcriptional regulator, XRE family [Halogeometricum borinquense DSM 11551] Length = 65 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R RR M+Q L + + +T Q + E+G ++ + + F Sbjct: 5 VRERRKAREMTQGDLADAVDVTRQSINAIERGRYNPSLELALKLAVEFDCAVEDLF 60 >gi|167920201|ref|ZP_02507292.1| putative DNA-binding protein [Burkholderia pseudomallei BCC215] Length = 195 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E + A L+ ++ L Sbjct: 2 DINQRIARRVRALRDLRGYSLDALAERSKVSRSNISLIEHAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVSPTV 80 ++ F+ Sbjct: 62 LASLFEDDRAA 72 >gi|163716598|gb|ABY40510.1| putative repressor [Burkholderia phage Bups phi1] Length = 118 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 10/103 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP G+R + RR LG+SQ+ + E +G++ + K E+G + + ++ L Sbjct: 4 MENP---EFGRRAKERREALGLSQKHVAELVGVSQPAIAKVERGGST-TTTNGFALARAL 59 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + + + V I + + + D G +I Sbjct: 60 LTTLEWL-EFGDEVGPQIPAGYDQLDDL-----GRAKVEAYIS 96 >gi|17988717|ref|NP_541350.1| MerR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23500652|ref|NP_700092.1| transcriptional regulator [Brucella suis 1330] gi|148558695|ref|YP_001257846.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225629381|ref|ZP_03787414.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225686684|ref|YP_002734656.1| hypothetical protein BMEA_B0907 [Brucella melitensis ATCC 23457] gi|254695939|ref|ZP_05157767.1| hypothetical protein Babob3T_15192 [Brucella abortus bv. 3 str. Tulya] gi|254700125|ref|ZP_05161953.1| hypothetical protein Bsuib55_04584 [Brucella suis bv. 5 str. 513] gi|254710842|ref|ZP_05172653.1| hypothetical protein BpinB_11376 [Brucella pinnipedialis B2/94] gi|254720212|ref|ZP_05182023.1| hypothetical protein Bru83_11898 [Brucella sp. 83/13] gi|256029224|ref|ZP_05442838.1| hypothetical protein BpinM2_00940 [Brucella pinnipedialis M292/94/1] gi|256043791|ref|ZP_05446713.1| hypothetical protein Bmelb1R_04819 [Brucella melitensis bv. 1 str. Rev.1] gi|256058912|ref|ZP_05449126.1| hypothetical protein Bneo5_00926 [Brucella neotomae 5K33] gi|256157420|ref|ZP_05455338.1| hypothetical protein BcetM4_00971 [Brucella ceti M490/95/1] gi|256253602|ref|ZP_05459138.1| hypothetical protein BcetB_04769 [Brucella ceti B1/94] gi|256262183|ref|ZP_05464715.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260167682|ref|ZP_05754493.1| hypothetical protein BruF5_04739 [Brucella sp. F5/99] gi|260564976|ref|ZP_05835461.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|261216367|ref|ZP_05930648.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261220739|ref|ZP_05935020.1| transcriptional regulator [Brucella ceti B1/94] gi|261318414|ref|ZP_05957611.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261322848|ref|ZP_05962045.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750617|ref|ZP_05994326.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757118|ref|ZP_06000827.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|265985222|ref|ZP_06097957.1| transcriptional regulator [Brucella sp. 83/13] gi|265986212|ref|ZP_06098769.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990218|ref|ZP_06102775.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265995908|ref|ZP_06108465.1| transcriptional regulator [Brucella ceti M490/95/1] gi|306841347|ref|ZP_07474056.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|17984528|gb|AAL53614.1| transcriptional regulator, merr family [Brucella melitensis bv. 1 str. 16M] gi|23464297|gb|AAN34097.1| transcriptional regulator, putative [Brucella suis 1330] gi|148369980|gb|ABQ62852.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225615877|gb|EEH12926.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225642789|gb|ACO02702.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260152619|gb|EEW87712.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260917974|gb|EEX84835.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919323|gb|EEX85976.1| transcriptional regulator [Brucella ceti B1/94] gi|261297637|gb|EEY01134.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261298828|gb|EEY02325.1| transcriptional regulator [Brucella neotomae 5K33] gi|261737102|gb|EEY25098.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|261740370|gb|EEY28296.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262550205|gb|EEZ06366.1| transcriptional regulator [Brucella ceti M490/95/1] gi|263000887|gb|EEZ13577.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263091879|gb|EEZ16201.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264658409|gb|EEZ28670.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264663814|gb|EEZ34075.1| transcriptional regulator [Brucella sp. 83/13] gi|306288650|gb|EFM59986.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|326411076|gb|ADZ68140.1| MerR family transcriptional regulator [Brucella melitensis M28] gi|326554367|gb|ADZ89006.1| MerR family transcriptional regulator [Brucella melitensis M5-90] Length = 182 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF + P + + +++ Sbjct: 59 GMAEFFALEPDAPHRVFYQAEELVEI 84 >gi|51894099|ref|YP_076790.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51857788|dbj|BAD41946.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 196 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 8/130 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RIR R G++ ++L E G++ + + E L +S L P++ Sbjct: 8 MSLGHRIRQTRTQKGITLQELAERSGLSKGFLCQLENDKASPSLQALDRLSAGLGVPVAL 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + N + +GL QL ++ ++EL + Sbjct: 68 LLISQEERAHVVRA--NARQGYSMNGEGLSVQLLSA----PGRSLKMMLLELAPGAATGG 121 Query: 131 KKYRTIEEEC 140 + EEC Sbjct: 122 DNHVHEGEEC 131 >gi|61680543|pdb|1Y7Y|A Chain A, High-Resolution Crystal Structure Of The Restriction- Modification Controller Protein C.Ahdi From Aeromonas Hydrophila gi|61680544|pdb|1Y7Y|B Chain B, High-Resolution Crystal Structure Of The Restriction- Modification Controller Protein C.Ahdi From Aeromonas Hydrophila gi|32263455|gb|AAP78483.1| C.AhdI [Aeromonas hydrophila] Length = 74 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 9 NPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + D + G+R+R R G+SQE L G+ V E+G V + ++ L+ Sbjct: 7 HYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALD 66 Query: 68 SPISFFF 74 F Sbjct: 67 IEPRELF 73 >gi|147671814|ref|YP_001215344.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|147673183|ref|YP_001217016.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|147673763|ref|YP_001217013.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|153824168|ref|ZP_01976835.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae B33] gi|229508578|ref|ZP_04398081.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae BX 330286] gi|254226669|ref|ZP_04920247.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|254226678|ref|ZP_04920256.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|262166856|ref|ZP_06034579.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|262166979|ref|ZP_06034698.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|298498461|ref|ZP_07008268.1| cryptic phage CTXphi transcriptional repressor rstR [Vibrio cholerae MAK 757] gi|11134457|sp|O85264|RSR2_VIBCH RecName: Full=Cryptic phage CTXphi transcriptional repressor rstR gi|6851391|gb|AAF29541.1|AF220606_1 RstR [Vibrio cholerae] gi|11559577|gb|AAG38011.1|AF262318_2 RstR classical [Vibrio phage CTX] gi|21637281|gb|AAM70434.1|AF510999_1 RstR [Vibrio phage CTX] gi|3252903|gb|AAC24223.1| repressor [Vibrio cholerae 569B] gi|34980245|gb|AAQ84035.1| RstR [Vibrio cholerae] gi|66268071|gb|AAY43122.1| RstR [Vibrio phage CTX] gi|125620783|gb|EAZ49139.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|125620792|gb|EAZ49148.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|126518308|gb|EAZ75533.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae B33] gi|146314197|gb|ABQ18737.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|146315066|gb|ABQ19605.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|146315646|gb|ABQ20185.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|221236971|gb|ACM16038.1| RstR [Vibrio phage CTX] gi|221236983|gb|ACM16045.1| RstR [Vibrio phage CTX] gi|221236998|gb|ACM16055.1| RstR [Vibrio phage CTX] gi|227013372|gb|ACP09582.1| cryptic phage CTXphi transcriptional repressor RstR, classical [Vibrio cholerae O395] gi|227013375|gb|ACP09585.1| cryptic phage CTXphi transcriptional repressor RstR, classical [Vibrio cholerae O395] gi|227015379|gb|ACP11588.1| cryptic phage CTXphi transcriptional repressor RstR, classical [Vibrio cholerae O395] gi|229354532|gb|EEO19455.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae BX 330286] gi|258523312|gb|ACV73677.1| RstR [Vibrio phage CTX] gi|259046014|gb|ACV91462.1| RstR [Vibrio phage CTX] gi|259046023|gb|ACV91471.1| RstR [Vibrio phage CTX] gi|259046033|gb|ACV91480.1| RstR [Vibrio phage CTX] gi|259046042|gb|ACV91489.1| RstR [Vibrio phage CTX] gi|259046052|gb|ACV91498.1| RstR [Vibrio phage CTX] gi|259046061|gb|ACV91507.1| RstR [Vibrio phage CTX] gi|259046071|gb|ACV91516.1| RstR [Vibrio phage CTX] gi|259046080|gb|ACV91525.1| RstR [Vibrio phage CTX] gi|259046090|gb|ACV91534.1| RstR [Vibrio phage CTX] gi|259046099|gb|ACV91543.1| RstR [Vibrio phage CTX] gi|259046109|gb|ACV91552.1| RstR [Vibrio phage CTX] gi|259046118|gb|ACV91561.1| RstR [Vibrio phage CTX] gi|259130184|gb|ACV95535.1| RstR [Vibrio phage CTX] gi|259130202|gb|ACV95552.1| RstR [Vibrio phage CTX] gi|259130211|gb|ACV95561.1| RstR [Vibrio phage CTX] gi|259130221|gb|ACV95570.1| RstR [Vibrio phage CTX] gi|259130230|gb|ACV95579.1| RstR [Vibrio phage CTX] gi|259130246|gb|ACV95593.1| RstR [Vibrio phage CTX] gi|259130255|gb|ACV95602.1| RstR [Vibrio phage CTX] gi|262024620|gb|EEY43302.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|262024719|gb|EEY43397.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|297542794|gb|EFH78844.1| cryptic phage CTXphi transcriptional repressor rstR [Vibrio cholerae MAK 757] Length = 111 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R+ ++QE++ +G+ YEKG ++ +++ PI+ Sbjct: 4 SKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAELVSD 63 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 S T + + +++ + P+ Sbjct: 64 SETNIDEKLKSKIRMIESLDEPE 86 >gi|325833594|ref|ZP_08166043.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485518|gb|EGC87987.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 101 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 1 MVGNKKI--PNPV----DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 M N+K+ +P+ ++G R+ R G+SQ L E +G ++ E G+ V Sbjct: 1 MSKNEKMARKDPLVQRLSADLGSRLLEVRTSEGLSQTTLAEMVGTKHPRISNLEGGLVDV 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSD 83 S + ++ L+ D++ D Sbjct: 61 RLSDIVKLARALDVNPGELLDLAAYKLED 89 >gi|325262373|ref|ZP_08129110.1| transcriptional regulator [Clostridium sp. D5] gi|324032205|gb|EGB93483.1| transcriptional regulator [Clostridium sp. D5] Length = 140 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R RM + E+L + +G++ Q V K+E + + ++ + + Sbjct: 8 IGNTLRCLRMKHKYTMEELAKVIGVSRQSVAKWENNESLPDLLKCSDLANLYGITVDAII 67 Query: 75 DVSPTVCSDISSEENNVM 92 + S S+ S ++ + Sbjct: 68 NGSFADNSEESEDDGKYI 85 >gi|315143625|gb|EFT87641.1| peptidase S24-like domain protein [Enterococcus faecalis TX2141] Length = 228 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R M+ +L E +GI + +YE + +++ ++ LE+ + Sbjct: 4 ITDLRKQKKMTSTELAEKVGIAKSAMSRYENRTRQFPVNKISDFAKALETSPEYLLGFEE 63 Query: 79 TVCSDISSEENNVMDFISTP 98 S I ++ N + T Sbjct: 64 EPLSQILTKINETSAKLETK 83 >gi|312887403|ref|ZP_07747002.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300043|gb|EFQ77113.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 138 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 I++G+ I R G+ QE L LG++ Q + + E+ V +L+ I+++L Sbjct: 7 IHIGRNIERLREFKGIKQEVLASGLGVSQQTISRIEQSET-VDEVKLEQIAKLLGV 61 >gi|313113184|ref|ZP_07798810.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624523|gb|EFQ07852.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 270 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 21/125 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R GM+Q++L CL ++ + V K+E+G++ S L ++E L ++ Sbjct: 25 GSFLAQLRREKGMTQKELAACLYVSDKAVSKWERGLSVPDISLLVPLAEQLNVTVA---- 80 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK-------------IIEL 122 + EE T + ++ F + + RQ ++ L Sbjct: 81 ---ELLHGCRVEEEQRFTREETEELIRKALTFSA-EPPERRQARTQKFLPLYGVSVVLGL 136 Query: 123 VRSIV 127 V + Sbjct: 137 VETAA 141 >gi|290475035|ref|YP_003467919.1| regulatory protein cro (Antirepressor) [Xenorhabdus bovienii SS-2004] gi|289174352|emb|CBJ81146.1| Regulatory protein cro (Antirepressor) [Xenorhabdus bovienii SS-2004] Length = 66 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KR++ +R L M+Q +L E G Q +Q+ E G+ + + IS+ L+ + Sbjct: 4 ISKRLKTKRHELNMTQAQLAELSGTRQQSIQRIEAGITK-RPRFILEISKALDCDPLWL 61 >gi|229077098|ref|ZP_04209803.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-18] gi|228706198|gb|EEL58482.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-18] Length = 292 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R +SQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNISQSELCRGI-CSQSQISKIEKGIIYPSSILLYQLSERLGVDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|226355114|ref|YP_002784854.1| XRE family transcriptional regulator [Deinococcus deserti VCD115] gi|226317104|gb|ACO45100.1| putative Transcriptional regulator, XRE family [Deinococcus deserti VCD115] Length = 80 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 7/73 (9%) Query: 6 KIPNPVD-------INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + P P D I VG+RIR R+ GM+Q++ GI K E S Sbjct: 4 RKPQPTDPLVQEVRIRVGQRIRELRLAKGMNQDEFAAAAGIHRTHPGKLENAQIDPQLST 63 Query: 59 LQHISEVLESPIS 71 L ++ L + Sbjct: 64 LVKVASALGVRVD 76 >gi|167903989|ref|ZP_02491194.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] Length = 195 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVSPTV 80 ++ F+ Sbjct: 62 LASLFEDDRAA 72 >gi|297619249|ref|YP_003707354.1| XRE family transcriptional regulator [Methanococcus voltae A3] gi|297378226|gb|ADI36381.1| transcriptional regulator, XRE family [Methanococcus voltae A3] Length = 184 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 8/88 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI R I G+S E++ E L I+ +Q + YE G + AS L I+ +S Sbjct: 11 RIIEFREITGISIEEMAEYLHISPEQYRAYESGDADIPASMLCEIAHKFNVDLSLLLTGK 70 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNR 105 T + G+++NR Sbjct: 71 DTKMH--------IFSVTRKNQGVEVNR 90 >gi|153811409|ref|ZP_01964077.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174] gi|149832536|gb|EDM87620.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174] Length = 121 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FFF 74 G+ I+ R G+S+ +L + L I + + E L + +L+ + FFF Sbjct: 16 GQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYELVTLLDVSVDQFFF 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S + + +++ +S D Sbjct: 76 PEREQEKSTRRRQLDTMLNGMSEKD 100 >gi|94988428|ref|YP_596529.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94541936|gb|ABF31985.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] Length = 251 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R M+Q++L + G + +E G ++ ++ ++ L+ F Sbjct: 4 LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQLF 63 Query: 75 DVSPTVCS 82 D S + + Sbjct: 64 DYSSSPTN 71 >gi|24374515|ref|NP_718558.1| prophage LambdaSo, Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] gi|24349100|gb|AAN56002.1|AE015736_18 prophage LambdaSo, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] Length = 88 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 I + R G+SQ +LG+ +G T V YE G+ + + I + Sbjct: 15 NNISIYRKKAGLSQTELGKQIGKTQGAVGNYEAGIRNIDLTTCWEIVKAFN 65 >gi|83746365|ref|ZP_00943417.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551] gi|83726906|gb|EAP74032.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551] Length = 119 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P P+ +G+RI+ R SQE L + + E+G+ L ++ Sbjct: 19 STSRPAPILTALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANLC 78 Query: 64 EVLESPISFFF 74 L ++ F Sbjct: 79 YALNVTLAELF 89 >gi|53725534|ref|YP_103601.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|67643873|ref|ZP_00442616.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|76811218|ref|YP_334564.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|121600358|ref|YP_992235.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126450800|ref|YP_001081418.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134280073|ref|ZP_01766784.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167000869|ref|ZP_02266674.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167739889|ref|ZP_02412663.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167847008|ref|ZP_02472516.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167895592|ref|ZP_02482994.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|254175429|ref|ZP_04882089.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254191730|ref|ZP_04898233.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254196114|ref|ZP_04902539.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254202294|ref|ZP_04908657.1| DNA-binding protein [Burkholderia mallei FMH] gi|254207627|ref|ZP_04913977.1| DNA-binding protein [Burkholderia mallei JHU] gi|254259704|ref|ZP_04950758.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|254356472|ref|ZP_04972748.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52428957|gb|AAU49550.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|76580671|gb|ABA50146.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|121229168|gb|ABM51686.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126243670|gb|ABO06763.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134248080|gb|EBA48163.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|147746541|gb|EDK53618.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751521|gb|EDK58588.1| DNA-binding protein [Burkholderia mallei JHU] gi|148025469|gb|EDK83623.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157939401|gb|EDO95071.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160696473|gb|EDP86443.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169652858|gb|EDS85551.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|238525329|gb|EEP88757.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243063295|gb|EES45481.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254218393|gb|EET07777.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 195 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS 77 ++ F+ Sbjct: 62 LASLFEDD 69 >gi|332666273|ref|YP_004449061.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335087|gb|AEE52188.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 173 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 4/90 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K IR R + +SQE+L +G+ + YE G L IS + I Sbjct: 12 KNIRFLRKRMNLSQEELACKIGLNRGNIASYENGSAEPKVCNLLRISRLFGVSICDLAQR 71 Query: 77 SPTVCSDIS----SEENNVMDFISTPDGLQ 102 + S +++ D + P+ L+ Sbjct: 72 DLSEGQAASRVNGHLVSDLQDQLKNPEQLE 101 >gi|328554991|gb|AEB25483.1| transcription regulator protein [Bacillus amyloliquefaciens TA208] gi|328913346|gb|AEB64942.1| BamHI control element [Bacillus amyloliquefaciens LL3] Length = 81 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 7 IPNPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + + G+++R R+ MSQEKL + + E+G V ++ IS+ Sbjct: 1 MTNNIRLLFGQKVRQIRLSKSNMSQEKLAFECDLHRTYISDIERGTRNVSLDNIEKISKA 60 Query: 66 LESPISFFFD 75 L D Sbjct: 61 LGVQPKDLLD 70 >gi|262377548|ref|ZP_06070770.1| RtrR protein [Acinetobacter lwoffii SH145] gi|262307604|gb|EEY88745.1| RtrR protein [Acinetobacter lwoffii SH145] Length = 70 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G IR R+ ++QEKL I V + E+G + +L I+++L+ Sbjct: 2 NDLAQKIGHAIRNCRIEQKITQEKLALLCNIDRSYVGRIERGEVNITVLKLYEIAQILKV 61 >gi|254819472|ref|ZP_05224473.1| XRE family transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 64 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R+ G +QE+L G++ + E G + RL I++ L S + Sbjct: 2 GTRIQTLRIDRGYTQEELALRSGVSRNVLIDLEYGRRGILHERLFDIAKALGVSASELLE 61 Query: 76 V 76 Sbjct: 62 G 62 >gi|239627441|ref|ZP_04670472.1| BcrR [Clostridiales bacterium 1_7_47_FAA] gi|239517587|gb|EEQ57453.1| BcrR [Clostridiales bacterium 1_7_47FAA] Length = 204 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++R R+ ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLRQLRIGKNLTQEQLAEQLYVSRTAISKWEGGKGYPNIESLKCISKFFSITIDELLSG 64 Query: 77 SPTVCSDISSEENNV 91 + + NV Sbjct: 65 EELITLAETENNANV 79 >gi|182626310|ref|ZP_02954066.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908408|gb|EDT70950.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 65 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R + MSQ +L + +G+ Q + E I++ L + ++ F Sbjct: 2 NKIKEYRSLANMSQLELSKKVGVVRQTINLIENQKYNPSLDLCIRIAKALGTDLNTLF 59 >gi|168209805|ref|ZP_02635430.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170712069|gb|EDT24251.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] Length = 223 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+RI+ R GM+Q+ L + LG+ + V + E G + S + +S+VL + ++ Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLN 60 >gi|78066472|ref|YP_369241.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77967217|gb|ABB08597.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 191 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 11 VAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLVRIAKALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 +F D S F ++ Sbjct: 71 QYFIDTPTEARSVCRGNALQYFQFTNSA 98 >gi|22538150|ref|NP_689001.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76799144|ref|ZP_00781328.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77408029|ref|ZP_00784778.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|22535058|gb|AAN00874.1|AE014282_16 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76585496|gb|EAO62070.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77173391|gb|EAO76511.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 99 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEE 88 +Q +L L I+ + +E G + ++ +L+ + + S + I + Sbjct: 21 TQTELASKLNISQKSYSNWESGKAEPTLDNIIKLANILDVTVDYLLGRSDNFSNTIVLSK 80 Query: 89 NNVMDFISTPDGLQLNRYF 107 NN+ F L+L + + Sbjct: 81 NNMKSFSKRLKELRLEKEY 99 >gi|325977288|ref|YP_004287004.1| HTH-type transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177216|emb|CBZ47260.1| Uncharacterized HTH-type transcriptional regulator Mb0023 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 210 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 4/99 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N GK + R G++Q +L E +G+ + K E G + + L I+ ++ + Sbjct: 8 NFGKNVAQLRKKKGVTQAELAEVIGVKKAAISKIELGTSYPTFANLDKIARYFKATPNEL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F S +DI E + + ++ R +I++ Sbjct: 68 FGTS----TDIELERAVIKTDKYSEKAEKIIRAVSKIEE 102 >gi|324991594|gb|EGC23527.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 158 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + +GI+ + +YE G++ + + I + Sbjct: 2 IGDNIKYLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVS 56 >gi|323143709|ref|ZP_08078379.1| DNA-binding helix-turn-helix protein [Succinatimonas hippei YIT 12066] gi|322416512|gb|EFY07176.1| DNA-binding helix-turn-helix protein [Succinatimonas hippei YIT 12066] Length = 186 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + ++++ R ++Q KL E GI ++KYE +N +Q++++ Sbjct: 1 MKISQKLKELRKENQLTQGKLAELSGINHSAIRKYEIDINVPQDQHIQNLAKTFNISP 58 >gi|326423656|ref|NP_759095.2| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|319999008|gb|AAO08622.2| Predicted transcriptional regulator [Vibrio vulnificus CMCP6] Length = 108 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFFD 75 +R++ R G+S+E++ + + + ++ +E + R + +L +S++ Sbjct: 9 QRLKQARKAAGLSREQVAKAMHKSPHTIKSWETTSRQPRTLREVERLCSILGITVSWYLT 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P V + SE +L F + D + + ++EL++ + Sbjct: 69 GQPPVKPIMPSEREQ-----------ELLALFSGLSDEQ-QSAVLELIKVM 107 >gi|317508654|ref|ZP_07966310.1| hypothetical protein HMPREF9336_02682 [Segniliparus rugosus ATCC BAA-974] gi|316253057|gb|EFV12471.1| hypothetical protein HMPREF9336_02682 [Segniliparus rugosus ATCC BAA-974] Length = 86 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D +G + RR+ G S L GI + +YE L I+ L+ P Sbjct: 10 IDLRALGHELARRRVAKGWSLTDLVGHTGIAKATLHRYEMAQTNHTIRHLVKIARALDVP 69 Query: 70 IS 71 IS Sbjct: 70 IS 71 >gi|310825965|ref|YP_003958322.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612] gi|308737699|gb|ADO35359.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612] Length = 150 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 32/81 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ + R + +QE++ +G++ Q V K+E G + ++E+ + Sbjct: 4 HLSMNLTALRKMNQYTQEEVASRIGVSRQAVAKWENGESAPDVINCNALAEMYNVSLDDL 63 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + + ++ + F Sbjct: 64 VNYNEKEKDGLAIPPKDKHMF 84 >gi|300115620|ref|YP_003762194.1| XRE family transcriptional regulator [Nitrosococcus watsoni C-113] gi|299541562|gb|ADJ29873.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 104 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPI 70 +G +R RR LG +Q++L E G+ Q+ + E G + V L++++ + Sbjct: 2 IGNIVRNRRKQLGWTQKELAEKSGVAQAQISRLEAGKSYNVTIDSLRNLAWAFGCSV 58 >gi|325679169|ref|ZP_08158760.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109098|gb|EGC03323.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 373 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 + R ++QE+ E ++ Q V ++E G + L I+E I V Sbjct: 10 KKFRRERELTQEQAAEAFSVSTQAVSRWENGQTSPDITLLPIIAEYFGVSIETLLGVDSE 69 Query: 80 VCSDISSEENNVMDF 94 + E + DF Sbjct: 70 KRKAL--HEQYMNDF 82 >gi|253570557|ref|ZP_04847965.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251839506|gb|EES67589.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 73 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R + +SQE+L +G+T + + E G I+ P+ F + Sbjct: 8 NKIKVYRAMKNISQEELAIAIGVTRKTINTVETGKFIPSTVLALRIARYFGVPVEEIFVL 67 Query: 77 SPTVC 81 + Sbjct: 68 NDEAS 72 >gi|163845040|ref|YP_001622695.1| hypothetical protein BSUIS_B0917 [Brucella suis ATCC 23445] gi|163675763|gb|ABY39873.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 182 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF + P + + +++ Sbjct: 59 GMAEFFALEPDAPHRVFYQAEELVEI 84 >gi|331702631|ref|YP_004399590.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129974|gb|AEB74527.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 64 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IN+G ++ R +SQE + LG++ Q + ++E + L ++++ + I+ Sbjct: 2 INLGNNLKEFRQYNELSQEIIACRLGVSRQAISQWEHNLTYPDIENLVRLTQIFDCDIN 60 >gi|327404770|ref|YP_004345608.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327320278|gb|AEA44770.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 111 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 + R +G +Q+K+ E LG + +++ YE + L+ +++ +S FF+ Sbjct: 11 KQLRETMGFTQQKMAEYLGCSREEISYYENENREIPLLLLEKAADLFGVELSDFFNTENA 70 Query: 80 VCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 V I+ N+ + L F +I Sbjct: 71 VGIRIAYRANDYA-----AEDLHEIARFKRI 96 >gi|300310215|ref|YP_003774307.1| DNA-binding repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073000|gb|ADJ62399.1| DNA-binding repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 145 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ LG SQE G+ Q YE+G + +S++ +S+ Sbjct: 7 GERLKSERLRLGFSQEAFAAVGGVRKQAQISYEQGKTLPDIGFMAAVSKI-GVDVSYVIF 65 Query: 76 VSPTVCSDISSEENNVMDF 94 PT + S E+ + F Sbjct: 66 GIPTADALTSDEQQVLQGF 84 >gi|297158987|gb|ADI08699.1| hypothetical protein SBI_05579 [Streptomyces bingchenggensis BCW-1] Length = 440 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RR +LG SQE L + LG+ V ++E G + ++E+L+ ++ Sbjct: 24 LAERRKVLGYSQETLAQALGVDRTTVGRWECGKSEPQPPLRPKLAEILQVDLADL 78 >gi|297617503|ref|YP_003702662.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145340|gb|ADI02097.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 70 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 R+R R G++QE L + ++ Q + E G ++ V I Sbjct: 3 NRLRALREERGLTQEDLASMVDVSRQTIISLEHGRYNPSIILAHKLARVFGLTI 56 >gi|283832969|ref|ZP_06352710.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] gi|291071576|gb|EFE09685.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] Length = 200 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ V +RI+ R MS ++L ++ + + E + L ++ + + Sbjct: 18 VNEAVSQRIKQYRKQKKMSLDELSRQANVSKGMLVEIEGCKANPSIALLCRLAAAMGVSV 77 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + F DV + +E+ + G Sbjct: 78 ADFVDVGTKPTVHLIAEDEIPELWKGDKGGRA 109 >gi|257877834|ref|ZP_05657487.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257812000|gb|EEV40820.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 168 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G++I+ R ++QE+ L +T Q V +E N L I+ + E + Sbjct: 12 MEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAIATIFELSLD 70 >gi|256841360|ref|ZP_05546867.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737203|gb|EEU50530.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 109 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+ I+ R+ ++QE+LGE +G+ Q+ + E+G + + ++ + + L Sbjct: 41 LGEAIKKARIEQNLTQEQLGERIGVKRAQISRLERGYS-ITIPTMRRVFKALGV 93 >gi|225011082|ref|ZP_03701546.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] gi|225004802|gb|EEG42760.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] Length = 64 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R ++QE L +G++ Q + EKG ++ + +PI F Sbjct: 5 IKELRARHQLTQEDLAHKVGVSRQTINAIEKGKFDPSLPLAFKLAHLFHTPIEGIF 60 >gi|224369019|ref|YP_002603183.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223691736|gb|ACN15019.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 103 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 36/83 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R M+Q+++ +GI+ + E G + +L +E L+ Sbjct: 1 MKLGQLLKFIRTSKEMTQKEMASLIGISQNYLSLIESGTKNPSSDKLSDFAEALQISKDA 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 VS ++S ++ + + Sbjct: 61 LIFVSSNPPEELSGKDQKKYEQL 83 >gi|261405075|ref|YP_003241316.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929544|ref|ZP_08283268.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261281538|gb|ACX63509.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328936269|gb|EGG32718.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 65 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ +SQE+L + +G++ Q + E G S I + L ++ F Sbjct: 5 KLKMARVEKDLSQEELAQIVGVSRQTIGLIELGKYNPSLSLCVAICKALSRTLNDLF 61 >gi|170760678|ref|YP_001786283.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407667|gb|ACA56078.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 186 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+ + R GM+ + GI+ + + E+G S L+ I++ L P+ Sbjct: 3 DHRIGQTVLSYRRKNGMNIREFANYSGISTSLISQIERGEANPSLSVLELIAKALNVPLF 62 Query: 72 FFFDVSPTVCSDISSEEN 89 F S IS +++ Sbjct: 63 TLFINEIDTDSLISKKQD 80 >gi|167771942|ref|ZP_02443995.1| hypothetical protein ANACOL_03315 [Anaerotruncus colihominis DSM 17241] gi|167665740|gb|EDS09870.1| hypothetical protein ANACOL_03315 [Anaerotruncus colihominis DSM 17241] Length = 120 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 KRI+ R L +Q++ + +GI + YE G N + + I + + Sbjct: 3 KRIKELRKALHFTQQEFADRIGIKRNTIANYETGRNDPIDAVISLICKEFNVNERWL 59 >gi|126651763|ref|ZP_01723965.1| transcriptional regulator [Bacillus sp. B14905] gi|126591441|gb|EAZ85548.1| transcriptional regulator [Bacillus sp. B14905] Length = 179 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R MS E+L ++ + K E+G + L I L P+ Sbjct: 6 QVGMNLREIRKNKRMSLEELASISNVSKLTLGKIERGETNPTVNILWKICRGLHIPL 62 >gi|52842310|ref|YP_096109.1| prophage repressor CI-like [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629421|gb|AAU28162.1| hypothetical prophage repressor CI-like [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 234 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R+ G++++ L E + ++ +E+G G ++ ++ L+ ++ Sbjct: 15 IGQRIQEERIAKGLTRKALEELTDDLKQSRISNWERGDRTPGPEEIKQLARALDISPAYL 74 Query: 74 F 74 Sbjct: 75 M 75 >gi|76787698|ref|YP_330569.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76562755|gb|ABA45339.1| DNA-binding protein [Streptococcus agalactiae A909] Length = 358 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I L+R +GM+QE L + L +T + K+E + L ++ + + + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLV 61 Query: 75 DVSPTVCSD 83 T+ D Sbjct: 62 GYQKTLSDD 70 >gi|53720722|ref|YP_109708.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] gi|167740433|ref|ZP_02413207.1| putative transcriptional regulator [Burkholderia pseudomallei 14] gi|167817647|ref|ZP_02449327.1| putative transcriptional regulator [Burkholderia pseudomallei 91] gi|167912774|ref|ZP_02499865.1| putative transcriptional regulator [Burkholderia pseudomallei 112] gi|254198530|ref|ZP_04904951.1| putative DNA-binding protein [Burkholderia pseudomallei S13] gi|254300676|ref|ZP_04968121.1| putative DNA-binding protein [Burkholderia pseudomallei 406e] gi|52211136|emb|CAH37125.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] gi|157810610|gb|EDO87780.1| putative DNA-binding protein [Burkholderia pseudomallei 406e] gi|169655270|gb|EDS87963.1| putative DNA-binding protein [Burkholderia pseudomallei S13] Length = 356 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFD 75 ++ + R +++++L E GIT + + E G L+ ++ VL P+ FFF Sbjct: 5 SKLAIARKRRQLTKKELAEKSGITAVTLTRLETGKTADPSTETLETLARVLGYPVDFFFG 64 Query: 76 VSPTVCSDISSE 87 + ++ Sbjct: 65 QDYEELTTDAAS 76 >gi|39937189|ref|NP_949465.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651047|emb|CAE29570.1| possible transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] Length = 116 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N+K P + +R++ R + G++Q +L G+ V +E G + L+ ++ Sbjct: 2 NEKQPTDI---FQQRLKDARTLRGLNQAELAGKAGLPAASVSHFESGPRKPSFDNLKALA 58 Query: 64 EVLESPISFFFDVSPTVCSDISS 86 L+ + S T + + Sbjct: 59 SALDVTTDYLLGRSDTPEASAET 81 >gi|23098763|ref|NP_692229.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22776990|dbj|BAC13264.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 426 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G+ I+ R+ M+Q L + L I+ + K E G + +S+ L+ P+ Sbjct: 1 MDTKIGQIIKHYRLKANMTQADLADGL-ISVSYLSKIENGNQIPPGDIAELLSQRLDIPV 59 >gi|313115714|ref|ZP_07801167.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] gi|310621932|gb|EFQ05434.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] Length = 102 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R +Q+++ + LGI+ Q YE G L + E I + Sbjct: 2 ENLTAIRKESHATQQEVADYLGISRQAYGNYESGKREPDYETLLKLGEYFNCSIDYLLGS 61 Query: 77 SPTVCSDISSE 87 S +V + SE Sbjct: 62 SRSVRYPLLSE 72 >gi|296170806|ref|ZP_06852377.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894542|gb|EFG74280.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L E G+T + K E+ + + +++ L+ + F Sbjct: 5 LRAVRTQRGLTLEALAERTGLTKSYLSKIERRQSTPSIAVALKVAKALDVDVGQLFSDEE 64 Query: 79 TVC 81 Sbjct: 65 ARE 67 >gi|260101837|ref|ZP_05752074.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|260084352|gb|EEW68472.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|328463661|gb|EGF35254.1| transcriptional regulator [Lactobacillus helveticus MTCC 5463] Length = 66 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R +SQ +L + +G+ Q + E ++ VL + ++ F Sbjct: 4 VREYRKQKKISQMELAKRIGVARQTINLIENDKYNPSLELCLSLAHVLGTDLNSLF 59 >gi|291297562|ref|YP_003508840.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290566782|gb|ADD39747.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 183 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 3/113 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES--PI 70 ++G IR R +S +L + G++ + + E+G+ + A LQ I+ L+ P+ Sbjct: 4 RDIGGFIRDLRRNAKVSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIANALKVSTPL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFIQIDDVKVRQKIIEL 122 + + D + T Q L + R ++L Sbjct: 64 MYLRAGLLKTKDGQGTLATIAGDPLLTARQKQTLTEIYEAFRRENARDAGLDL 116 >gi|220910730|ref|YP_002486040.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] gi|219867502|gb|ACL47839.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 825 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +R R G++Q ++ LG++ QV +YE+ + L ++ L + I Sbjct: 5 LRGVRERAGLTQSQIAAMLGLSQAQVSRYEQDPGTISTELLIRWAQALGTDI 56 >gi|297618899|ref|YP_003707004.1| XRE family transcriptional regulator [Methanococcus voltae A3] gi|297377876|gb|ADI36031.1| transcriptional regulator, XRE family [Methanococcus voltae A3] Length = 64 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R + ++Q++L + +G+T Q + EKG +S++ I F Sbjct: 3 NKIKVFRAMNDLTQDELAKKIGVTRQTISAIEKGKYDPSLIIAFKLSKLFNVKIEEIF 60 >gi|146343555|ref|YP_001208603.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196361|emb|CAL80388.1| Shikimate kinase [Bradyrhizobium sp. ORS278] Length = 307 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+R+R R + GMS++ L E GI+ + + + E G V L+ I+ + +P+ Sbjct: 24 QLGQRVRRMRGLAGMSRKVLAEVSGISERYIAQLESGKGNVSIVLLRRIANAINAPLD 81 >gi|28377746|ref|NP_784638.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300767732|ref|ZP_07077642.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179914|ref|YP_003924042.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270579|emb|CAD63483.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300494717|gb|EFK29875.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045405|gb|ADN97948.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 122 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R+ R S+ ++ LG++ Q+ YE G N + L+ I+++ + + Sbjct: 11 RRLINLRDSRNWSKTEVARKLGLSSMQRYANYEYGTNEPDLNMLKQIADLYDVTTDYLLG 70 Query: 76 VSPTVCSDISSEENNVMDFIS 96 + ++ DF++ Sbjct: 71 EDSASKWIARKDTTDLKDFLT 91 >gi|326942848|gb|AEA18744.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 73 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ LG+ +G + Q + E+G I+++ P+ F Sbjct: 5 NRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIF 62 >gi|323691518|ref|ZP_08105787.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] gi|323504412|gb|EGB20205.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] Length = 136 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G I R GM+Q +L E +G+T + V K+E+ + + L ++ + + Sbjct: 3 NRTFGMLIAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLLYPDVNSLPKLAGIFGISVD 62 >gi|289547795|ref|YP_003472783.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] gi|289181412|gb|ADC88656.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] Length = 329 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQE+L + I + E+ + S I+ L + F Sbjct: 3 NRVKELRERAGLSQEELAKLCKIPRTTLSAIEREMVVPSVSHAIRIARALGCSVEELF 60 >gi|260662345|ref|ZP_05863240.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260553036|gb|EEX25979.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 188 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R G +Q++ E L Q V K E+GV L +I + + Sbjct: 30 IGQNIRRLRKDNGYTQKQFAEKLETIEQTVSKIERGVFSPSTDSLMNICTIFGVTPNDLM 89 >gi|239625605|ref|ZP_04668636.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519835|gb|EEQ59701.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 190 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R ++ ++L E G++ + + E+ S L+ I+ + P+ Sbjct: 2 LGTNIREYRKNKKLTIKELSERTGLSIGYISQVEREEAEPSLSSLRKIAREFDVPVYVLM 61 Query: 75 DV 76 D Sbjct: 62 DD 63 >gi|229011075|ref|ZP_04168269.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] gi|228750247|gb|EEM00079.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] Length = 405 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 5 LGEKIKTLRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 75 DVSPTVCSDI 84 + +I Sbjct: 64 EEDDVEIVEI 73 >gi|226309766|ref|YP_002769660.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226092714|dbj|BAH41156.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 69 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G RIR R + G +Q+ L + +G++ V E+G L+ I+ L+ Sbjct: 5 QLGNRIRSFRKLKGYTQQSLSDKMGVSLSFVGSLERGTRTPTEPVLRKIASTLQVD 60 >gi|220916216|ref|YP_002491520.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954070|gb|ACL64454.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 410 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+RI R ++Q L +G+ + EKG R + L ++ L+ + Sbjct: 7 LGERIAFARKNANLTQADLAAKIGVARTTLVAVEKGERRPSNAELIKLAGFLKVSV 62 >gi|153008229|ref|YP_001369444.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560117|gb|ABS13615.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 110 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++ R GMS + L + GI+ + + EKG+ ++ I+E L+ I Sbjct: 53 NKIKVWRDYRGMSAKALADAAGISAAYLSQIEKGLREGSLDAMKKIAEALKVTID 107 >gi|90419013|ref|ZP_01226924.1| possible helix-turn-helix protein [Aurantimonas manganoxydans SI85-9A1] gi|90337093|gb|EAS50798.1| possible helix-turn-helix protein [Aurantimonas manganoxydans SI85-9A1] Length = 137 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFFFD 75 +R+R R M+ E L E G + + + E + + A +L I+E L++ + F Sbjct: 38 ERVRRLRKAKKMTLEALAEASGSSRSYIWEIENRPETKPSAEKLARIAEALDTTVEFLMA 97 Query: 76 VSPTVCSDISSEEN 89 V + S+ + + Sbjct: 98 VDESSVSEEDATDR 111 >gi|70733319|ref|YP_263093.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347618|gb|AAY95224.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 182 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF +V S I + + ++D ++L Sbjct: 58 MVEFFSEEVLQETPSQIVYKAHELIDISDGAVTMKLV 94 >gi|163939593|ref|YP_001644477.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861790|gb|ABY42849.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 404 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKTLRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + +I Sbjct: 63 EEDDVEIVEI 72 >gi|47093935|ref|ZP_00231673.1| transcription regulator [Listeria monocytogenes str. 4b H7858] gi|47017695|gb|EAL08490.1| transcription regulator [Listeria monocytogenes str. 4b H7858] gi|328467149|gb|EGF38236.1| hypothetical protein LM1816_14897 [Listeria monocytogenes 1816] Length = 394 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 18/106 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++R R + G+S+++L + L ++ Q + +YE + + V F Sbjct: 1 MFFGEKLRSVRELNGLSRKELADKLNLSEQAIWQYENQYTVPKFEVVNELKGVFNVKAQF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 F+ + IS + + + +D +VR+K Sbjct: 61 FY-------------SEPFITNISKVESIA-----YRAEDREVRKK 88 >gi|325694303|gb|EGD36217.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 94 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK+++L R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 2 LGKQLKLIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLD 58 >gi|322374490|ref|ZP_08049004.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300] gi|321279990|gb|EFX57029.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300] Length = 96 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK+++L R G SQ ++ E LG T Q + +E + + L +++ + + Sbjct: 4 LGKQLKLFREQNGYSQNQIAEYLGTTRQTISNWENDKTIIDSHSLIRLADFYQISLD 60 >gi|315633741|ref|ZP_07889031.1| DNA-binding protein [Aggregatibacter segnis ATCC 33393] gi|315477783|gb|EFU68525.1| DNA-binding protein [Aggregatibacter segnis ATCC 33393] Length = 140 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 33/58 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +NV ++IR R SQE++ E + ++ K E+G ++ +L+ I+++L+ I Sbjct: 1 MNVHEKIRKLRETKHWSQEEMAEKMSMSLNGYAKIERGETKLHLDKLEQIAQILDIDI 58 >gi|307354843|ref|YP_003895894.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307158076|gb|ADN37456.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 77 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R G++Q++L E + ++ + + EKG ++ I F F Sbjct: 3 NRIKELRNERGVTQQELAEKVDVSSRTIISLEKGQYNPSVLLAHKLAVFFNCAIEEVFIF 62 Query: 75 DVSPTVCSDISSEEN 89 + D + E Sbjct: 63 GKEDGIRGDADNSEQ 77 >gi|229132613|ref|ZP_04261461.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|228650845|gb|EEL06832.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] Length = 405 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 5 LGEKIKTLRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 75 DVSPTVCSDI 84 + +I Sbjct: 64 EEDDVEIVEI 73 >gi|227113894|ref|ZP_03827550.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 188 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G ++ R G S + E G++ + + E+G + + L I+ + Sbjct: 1 MSDELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGM 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 S F + D++ F G+ + F D K+R Sbjct: 61 NVAFSTFIE-PTLADEDVTYRSGAGSSFKENEAGMHVVPLFP--FDEKLR 107 >gi|289805529|ref|ZP_06536158.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 107 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +RI+ R MS ++L G++ + + E + L I+ + + Sbjct: 18 INEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSV 77 Query: 71 SFFFDVSPT 79 + F +V+ Sbjct: 78 ADFVNVASE 86 >gi|167825520|ref|ZP_02456991.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|217421247|ref|ZP_03452752.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226193747|ref|ZP_03789349.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|217396659|gb|EEC36676.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225934052|gb|EEH30037.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] Length = 195 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L + Sbjct: 3 INQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSL 62 Query: 71 SFFFDVSPTV 80 + F+ Sbjct: 63 ASLFEDDRAA 72 >gi|49187883|ref|YP_031136.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|167634898|ref|ZP_02393216.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167639942|ref|ZP_02398210.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685616|ref|ZP_02876839.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707037|ref|ZP_02897494.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177652240|ref|ZP_02934743.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567224|ref|ZP_03020139.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033157|ref|ZP_03100570.1| DNA-binding protein [Bacillus cereus W] gi|218906227|ref|YP_002454061.1| DNA-binding protein [Bacillus cereus AH820] gi|227817802|ref|YP_002817811.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229603307|ref|YP_002869269.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254687363|ref|ZP_05151220.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254725376|ref|ZP_05187159.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254733728|ref|ZP_05191444.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254740566|ref|ZP_05198257.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254753172|ref|ZP_05205208.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761515|ref|ZP_05213536.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|49181810|gb|AAT57186.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|167512023|gb|EDR87401.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529648|gb|EDR92397.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128140|gb|EDS97010.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170670080|gb|EDT20820.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172082246|gb|EDT67312.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561728|gb|EDV15698.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195994586|gb|EDX58541.1| DNA-binding protein [Bacillus cereus W] gi|218539421|gb|ACK91819.1| DNA-binding protein [Bacillus cereus AH820] gi|227005411|gb|ACP15154.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229267715|gb|ACQ49352.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 73 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ LG+ +G + Q + E+G I+ + P+ F Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIF 62 >gi|323141018|ref|ZP_08075925.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414507|gb|EFY05319.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 120 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP +G I+ R +SQ+ L + + I+ + E G V + IS+ L+ Sbjct: 7 NPDYKLIGNNIKQMRTKSQVSQQSLAKAINISQTHMSNLENGKTGVSLAIAIRISQHLKC 66 Query: 69 PIS 71 + Sbjct: 67 SLD 69 >gi|313898507|ref|ZP_07832044.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956889|gb|EFR38520.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 71 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ RM L MSQE+L +G T Q + E G I L + F Sbjct: 5 KIKMARMELNMSQEELAGKVGATRQTIGLIEAGRYNPTIKLCIKICIALHKHLDDLF 61 >gi|297342817|gb|ADI33756.1| control protein [Shigella boydii] Length = 75 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 23/47 (48%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 R +G++Q+ L E LG + KYE G R+ A L I L P Sbjct: 18 RKRIGVTQKMLSEALGKPQSYISKYETGERRIDAIELIDICNELGVP 64 >gi|321314155|ref|YP_004206442.1| hypothetical protein BSn5_14035 [Bacillus subtilis BSn5] gi|291482927|dbj|BAI84002.1| putative transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|320020429|gb|ADV95415.1| hypothetical protein BSn5_14035 [Bacillus subtilis BSn5] Length = 84 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ +SQ++L + +G++ Q + EKG I+E ++ F Sbjct: 16 ISNKVYEYRVLARLSQQELAKKVGVSKQTIFVMEKGNYVPTLLLAFRIAEFFNVDVNEIF 75 >gi|239996716|ref|ZP_04717240.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii ATCC 27126] Length = 175 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 10/129 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R G+S +L GI + + E+G + +++ L+ P F Sbjct: 9 LGRHLQKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVP----F 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF-IQIDDVKVRQKIIELVRSIVSSEKKY 133 S E+ + I G+ + + + R+ + + ++ Sbjct: 65 GQLVQPLSASVGEKGVEVRLIEQGQGIPNVDAYWMSVAPNTFRE-----AEAHATGTEET 119 Query: 134 RTIEEECMV 142 T+ + Sbjct: 120 ITVVSGSLE 128 >gi|229168069|ref|ZP_04295797.1| hypothetical protein bcere0007_30280 [Bacillus cereus AH621] gi|228615313|gb|EEK72410.1| hypothetical protein bcere0007_30280 [Bacillus cereus AH621] Length = 242 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELVAYIGITKASVSKWETGQSYPDITFLPLLASYFNISID 62 >gi|254520154|ref|ZP_05132210.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226913903|gb|EEH99104.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 434 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ +R L M+ + L IT Q+ E G + L++++ L++ + + Sbjct: 7 LGEKIKRKRKELDMTLKDLAGD-RITPGQISLVESGRSNPSMDLLEYLAGALQTSVEYLM 65 Query: 75 DVSPTVCSDISSEENNVMD 93 + T IS V + Sbjct: 66 ESEETQAEKISIYYEQVAE 84 >gi|289582562|ref|YP_003481028.1| XRE family transcriptional regulator [Natrialba magadii ATCC 43099] gi|289532115|gb|ADD06466.1| transcriptional regulator, XRE family [Natrialba magadii ATCC 43099] Length = 79 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ RR G+SQ L E + +T Q + E+ ++ E I F+ Sbjct: 3 NQLTERREEAGLSQGDLAEAVDVTRQTINAIERERYDPSLELAFKLAAFFECHIEELFEP 62 Query: 77 S 77 Sbjct: 63 D 63 >gi|149374604|ref|ZP_01892378.1| transcriptional regulator, XRE family protein [Marinobacter algicola DG893] gi|149361307|gb|EDM49757.1| transcriptional regulator, XRE family protein [Marinobacter algicola DG893] Length = 267 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G ++R R GMSQ L I+ + + E G +R + ++ LE P+ Sbjct: 18 GHKLRYWRRHRGMSQLDLALEADISPRHLSFIETGRSRPKRDLVLKLAVTLEVPL 72 >gi|108936762|emb|CAK48822.1| Sse9I control protein [Sporosarcina sp.] Length = 92 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ +R R+ G+SQE L E +G+ + E+G ++ ++ L+ Sbjct: 16 RTFGQNLRDLRVARGLSQEALAELIGVHRTYMGGLERGERNPTLKSVERVAAHLDVDP 73 >gi|77407989|ref|ZP_00784738.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77173351|gb|EAO76471.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 358 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I L+R +GM+QE L + L +T + K+E + L ++ + + + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDLV 61 Query: 75 DVSPTVCSD 83 T+ D Sbjct: 62 GYQKTLSDD 70 >gi|319902619|ref|YP_004162347.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108] gi|319417650|gb|ADV44761.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108] Length = 105 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 4 NKKIPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 ++ DIN +G+ I+ R ++QE+LGE +G+ Q+ K E G + V S + Sbjct: 23 PRRNKYETDINNFLIGEAIKQARESKNLTQEQLGELMGVQKAQISKIESGKS-VTFSTIV 81 Query: 61 HISEVLES 68 + + Sbjct: 82 RAFKAMGV 89 >gi|312138238|ref|YP_004005574.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887577|emb|CBH46889.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 197 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R G + L GI+ + + E G + L ++ P+ Sbjct: 15 VGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLPLARAYGVPLD 71 >gi|323529073|ref|YP_004231225.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323386075|gb|ADX58165.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 212 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 30/77 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 75 DVSPTVCSDISSEENNV 91 T + + +++ Sbjct: 95 APQKTPEAIAVAGPHDI 111 >gi|290956222|ref|YP_003487404.1| hypothetical protein SCAB_17071 [Streptomyces scabiei 87.22] gi|260645748|emb|CBG68839.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 330 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R +SQ +L G + + V E G +R + ++E L+ P+ Sbjct: 70 VGPLLRAWREQRRLSQLELALRAGSSARHVSFVETGRSRPSEEMVLRLAEHLDVPV 125 >gi|260596933|ref|YP_003209504.1| hypothetical protein CTU_11410 [Cronobacter turicensis z3032] gi|260216110|emb|CBA28884.1| hypothetical protein CTU_11410 [Cronobacter turicensis z3032] Length = 108 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R M+ +L + + + E+G+ + +Q I+E L P++ Sbjct: 1 MKIGEKIRQIRKANQMTLSELALRVESDVGNLSRLERGMQGYSDTLIQKIAEALGVPVAE 60 Query: 73 FFDVSPTVCS 82 F + + Sbjct: 61 LFSSNEASDT 70 >gi|218673691|ref|ZP_03523360.1| hypothetical protein RetlG_20083 [Rhizobium etli GR56] gi|218682865|ref|ZP_03530466.1| hypothetical protein RetlC8_29094 [Rhizobium etli CIAT 894] gi|327193314|gb|EGE60219.1| hypothetical protein RHECNPAF_170017 [Rhizobium etli CNPAF512] Length = 168 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +R R + + KL LGIT Q +YE GV+R+ SRL H+ EVL+ Sbjct: 45 LREARDKRKLPRSKLAPLLGITKQVYGRYENGVSRLTVSRLIHLCEVLD 93 >gi|198283398|ref|YP_002219719.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247919|gb|ACH83512.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 152 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R LG++Q +LG+ G++ V ++E G + L + + L + Sbjct: 8 IGDRIKEIRKRLGLTQAELGKHAGGLSKSAVHQWENGGTKPAWDALTALRKNLGINPDWV 67 Query: 74 FDVSPTVCSDISSE 87 + ++ + Sbjct: 68 MQGEGAMLQELGTP 81 >gi|116629496|ref|YP_814668.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116095078|gb|ABJ60230.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] Length = 129 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISF 72 N+G I+ RR L M+QE L E ++ + K E+ G + +L I++ L++ + Sbjct: 11 NLGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDTIAKALQTSVIT 70 Query: 73 FFDVSPTVCS 82 D S Sbjct: 71 LIDESSKTPE 80 >gi|146301419|ref|YP_001196010.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155837|gb|ABQ06691.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 138 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G++I R + M QE L + +G Q V E + +L+ +++ L + Sbjct: 9 HMGRKISRIRELKDMKQEALAQAMGTNQQTVSILENSE-EIDDEKLKEVAKALGVSV 64 >gi|143833|gb|AAA22893.1| PBSX repressor [Bacillus subtilis] Length = 113 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 16/120 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 2 IGSRLKSLRGKR--TQEEIVSHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYLL 59 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEKK 132 D D S P L + + D + +Q+ IE + + EK Sbjct: 60 TGKDKKSDD---------DMFSDP---DLQVAYRDMQDFSPESKQQAIEFINYLKEKEKN 107 >gi|291549308|emb|CBL25570.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 76 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R +Q+ + + LGI+ +YE+G N + L + +F +S Sbjct: 9 MRGLREDNDKTQQDIADFLGISQTMYARYERGANELPIRHLIKLCRYYHVSADYFLGLSK 68 >gi|320007540|gb|ADW02390.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 276 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 4/88 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G +R R + G+SQ +L + + + E G + S + H++E L+ P+ Sbjct: 7 DPKAGSLLRGWRKLRGLSQLELALRADSSARHISFIETGRSTPSRSMVLHLAEHLDVPVR 66 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPD 99 + + ++ P+ Sbjct: 67 ----ERNALLMAAGHAPSYPETSLTAPE 90 >gi|258653119|ref|YP_003202275.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556344|gb|ACV79286.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 225 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V + PN +G +++ R + E++ E G+T + K E+ + + L Sbjct: 5 VATEPAPNEETARIGAKLKAIRRAQRRTLEEVAEASGLTKGFLSKIERDLASASVAALLR 64 Query: 62 ISEVLESPISFFFDVSPTVC 81 I L P+S F+ T Sbjct: 65 ICATLGIPLSSLFESDSTGE 84 >gi|228909127|ref|ZP_04072956.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis IBL 200] gi|228850635|gb|EEM95460.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis IBL 200] Length = 66 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RI + R G +Q+ LGE +G + Q + E+ I++ P+ F+ Sbjct: 4 NRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAQAFGKPLEEVFE 62 >gi|227821794|ref|YP_002825764.1| hypothetical protein NGR_c12290 [Sinorhizobium fredii NGR234] gi|227340793|gb|ACP25011.1| hypothetical protein NGR_c12290 [Sinorhizobium fredii NGR234] Length = 131 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 18/125 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R +S ++L +G+ + + +E+ +RL ++ VL ++ Sbjct: 21 LGGRIWRARDAAKLSIKELAVRVGVRGETISAWERDRAEPRTNRLFMLASVLGVTPAWLI 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-RSIVSSEKKY 133 + S + + + L+L +++ E +I + E + Sbjct: 81 TGIGRAPDEGPSHSHTAL-----REQLELV------------KRLHEQTGEAIAALESEL 123 Query: 134 RTIEE 138 IEE Sbjct: 124 ERIEE 128 >gi|255100610|ref|ZP_05329587.1| hypothetical protein CdifQCD-6_07342 [Clostridium difficile QCD-63q42] Length = 118 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 11/106 (10%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +G+ I+ +R G +QE L + + T + + +E + + +L+ Sbjct: 8 LDFHALGREIKRKREAKGWTQEYLAQLVDRTPRSIMYFENRGQHPSLNTFYQLVTLLDIS 67 Query: 70 ISFFFDVSPTVCSDI----------SSEENNVMDFISTPDGLQLNR 105 + FF +E + +T +GL+ R Sbjct: 68 VDDFFYPDKQNGQSDCRKHIDHLLNEMDEKELTIIEATAEGLKRAR 113 >gi|212640061|ref|YP_002316581.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561541|gb|ACJ34596.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 81 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N + V +G IR R L +SQE+L G+ + E+G + L Sbjct: 1 MRNINDRDKVLKIIGNNIRSIRTSLNLSQEELAFESGLHRTYIGAVERGEKNITILNLIK 60 Query: 62 ISEVLESPISFFFDVSPTV 80 I+ LE + D+ Sbjct: 61 IANALEVRVQDLLDLDKEE 79 >gi|114764625|ref|ZP_01443829.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114543001|gb|EAU46021.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 463 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 50/132 (37%), Gaps = 12/132 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R LG++Q+ LGI+ + + E V + + +++ ++ Sbjct: 6 LYAGAKLRDLRGRLGLTQKDFAGKLGISLPYLNQMENNNRPVSTTVVLALAQEFGFDVTE 65 Query: 73 FFDVS---------PTVCSDISSEENNVMDF-ISTPDGLQLNRYFIQIDDV--KVRQKII 120 + I E + D ++ + L R F+++ + +++ Sbjct: 66 LGQGDSERLVSDMREALADPIFGESPPLADLRLTASNAPALARAFLELHRAYRQTHERLA 125 Query: 121 ELVRSIVSSEKK 132 L ++ + + Sbjct: 126 SLDEALGREDAQ 137 >gi|116493704|ref|YP_805438.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116103854|gb|ABJ68996.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 202 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N K++ RM M+Q L E L ++ V +E N + I+ + E + Sbjct: 1 MNFSKQLHQIRMAHQMTQANLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDT 60 Query: 73 FFDVSPTVCSDISSEEN 89 P + + + Sbjct: 61 LILDDPKLNEKLIQDSK 77 >gi|325569494|ref|ZP_08145590.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157283|gb|EGC69446.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 146 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 34/82 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R+ LG++Q+++ E L +T Q + +E + L +S++ + + Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLEA 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 E F Sbjct: 61 LLKPEQLADEPERMSEEKKPTF 82 >gi|297538615|ref|YP_003674384.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297257962|gb|ADI29807.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 212 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 8/93 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G IR R+ ++ + E GI+ + K E + L+ ++ L +S Sbjct: 21 RHLGTTIRQLRLEHNLTIADVSERAGISRGMLSKIENSLAATSLETLEQLANALGVTLSK 80 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F + +G+++ R Sbjct: 81 LFQNYNL--------PRGAAQLVKKGEGMEVVR 105 >gi|291484905|dbj|BAI85980.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 113 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 64 LDEKHETEYDGQLDSE 79 >gi|254705610|ref|ZP_05167438.1| hypothetical protein BpinM_00991 [Brucella pinnipedialis M163/99/10] gi|261313020|ref|ZP_05952217.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261302046|gb|EEY05543.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] Length = 182 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF + P + + +++ Sbjct: 59 GMAEFFALEPDAPHRVFYQAEELVEI 84 >gi|229176551|ref|ZP_04303977.1| Transcriptional regulator [Bacillus cereus MM3] gi|228606907|gb|EEK64303.1| Transcriptional regulator [Bacillus cereus MM3] Length = 115 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ I+ R ++QE+L + G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKRLRKSFDLTQEQLSDRTGLSRGQIKNWETDRHEPDLESLKVLASFFNTS 59 >gi|291286470|ref|YP_003503286.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290883630|gb|ADD67330.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 149 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 9/98 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 +R++ + + Q +L + +G+ + + Y KG + L+ ++E LE+PI +FF Sbjct: 6 ERLKALIDVKNIKQTELADLIGVNSKSINTYVKGRSEPNLDLLKKMAEELETPIEYFFGY 65 Query: 76 --VSPTVCSDISSEENNVMDFIST------PDGLQLNR 105 + + +SSE+ +++ I D LQL + Sbjct: 66 ISLDEAINGGLSSEKALLINTIRNINTPIPNDTLQLIK 103 >gi|227485487|ref|ZP_03915803.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236486|gb|EEI86501.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 70 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G +Q +LG +G++ Q + E+G + I++VL I+ F + T Sbjct: 11 RKKAGYNQAELGGLVGVSRQTISLIERGDYNPSVTVALTIAKVLGVDINEIFRLEETDE 69 >gi|168702699|ref|ZP_02734976.1| putative transcriptional regulator [Gemmata obscuriglobus UQM 2246] Length = 84 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R+R R G+SQE+L E G+ V E+G + ++ ++ LE ++ Sbjct: 17 GERLREVREGAGISQERLAELAGLHRTYVSSVERGKRNISLENIERLAVALEVEMAALM 75 >gi|168217329|ref|ZP_02642954.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|182380554|gb|EDT78033.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 223 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+RI+ R GM+Q+ L + LG+ + V + E G + S + +S+VL + ++ Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLN 60 >gi|146318559|ref|YP_001198271.1| Cro/CI family transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320757|ref|YP_001200468.1| Cro/CI family transcriptional regulator [Streptococcus suis 98HAH33] gi|253751682|ref|YP_003024823.1| Cro/CI family transcriptional regulator [Streptococcus suis SC84] gi|253755603|ref|YP_003028743.1| Cro/CI family transcriptional regulator [Streptococcus suis BM407] gi|145689365|gb|ABP89871.1| transcriptional regulator, Cro/CI family [Streptococcus suis 05ZYH33] gi|145691563|gb|ABP92068.1| transcriptional regulator, Cro/CI family [Streptococcus suis 98HAH33] gi|251815971|emb|CAZ51587.1| transcriptional regulator, Cro/CI family [Streptococcus suis SC84] gi|251818067|emb|CAZ55859.1| transcriptional regulator, Cro/CI family [Streptococcus suis BM407] Length = 73 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R SQE L L + K E G ++ L ISE+ + + + Sbjct: 3 RRIRDLREDCDYSQEYLARYLSCSQSAYSKIESGKRQIPVDFLIKISELYQVSTDYLLGL 62 Query: 77 SPT 79 + T Sbjct: 63 TDT 65 >gi|152997330|ref|YP_001342165.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150838254|gb|ABR72230.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 132 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 10/112 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I++ R+ M+QE++ + V + EKG+ + LQ +++ L + S Sbjct: 1 MNIGHVIKILRIQRKMTQEQIALEADMATSNVSRIEKGLRQPSQKVLQKLAKALNTKPSV 60 Query: 73 FFDVSPTVCSDISS----------EENNVMDFISTPDGLQLNRYFIQIDDVK 114 + S ++IS +E+N+ + D + F ++ Sbjct: 61 LYAASEQPITNISDFLEKEGNDEKKEDNINQLLLNHDTQVALKLFSELTPDN 112 >gi|49474962|ref|YP_033003.1| hypothetical protein BH01480 [Bartonella henselae str. Houston-1] gi|49237767|emb|CAF26960.1| hypothetical protein BH01480 [Bartonella henselae str. Houston-1] Length = 180 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 17 KRIRLRRMILGMS-QEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KR R R ILG + +++ E LG+T + YE GV+ AS L E+ + + Sbjct: 14 KRFREVRRILGFTERKQFAEHLGVTAGSIGTYETGVSEPTASALSKYQEICGVSLDWLVT 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR----YFIQIDDVKV 115 + + +D++ + + P GL + R + D K+ Sbjct: 74 GNGEMFTDMAKAKAAGFKPQAIPAGL-MKRLGHLAYTTYHDAKI 116 >gi|300172868|ref|YP_003772033.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887246|emb|CBL91214.1| Transcriptional regulator, XRE family,putative [Leuconostoc gasicomitatum LMG 18811] Length = 69 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R M+Q +L + L +T Q + EKG + +I+ + I F F Sbjct: 3 NRIQELRKSRHMTQAELADKLEVTRQTIISLEKGKYNASLTLAHNIASFFQLTIETVFIF 62 Query: 75 DVSPT 79 + T Sbjct: 63 EEDKT 67 >gi|300690045|ref|YP_003751040.1| transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] gi|299077105|emb|CBJ49726.1| putative transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] Length = 209 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 30/89 (33%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ + +R+R R G + + L G++ + E+G A+ L ++ L + Sbjct: 16 VNERIARRVRELRAARGYTLDVLATRCGVSRSMISLIERGAASPTAAVLDKLAAGLGVSL 75 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 + F P+ Sbjct: 76 ASLFGGEREGVPAQPLMRRAQQAQWRDPE 104 >gi|134045361|ref|YP_001096847.1| cupin 2 domain-containing protein [Methanococcus maripaludis C5] gi|132662986|gb|ABO34632.1| Cupin 2, conserved barrel domain protein [Methanococcus maripaludis C5] Length = 184 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S E++ + L I+ + Q YE+G V AS L I+ E + Sbjct: 6 KEIAARVRELRELSDISIEEMADHLKISPEIYQHYEEGTCDVPASVLYEIAHKFEVDMGL 65 Query: 73 FFDVSPT 79 T Sbjct: 66 LLTGEET 72 >gi|70731387|ref|YP_261128.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68345686|gb|AAY93292.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 65 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R G SQ +L L ++ Q V E G I+ E PI F Sbjct: 3 NQLRELRTRQGWSQAELATRLEVSRQTVNAIETGRYDPSLPLAFKIARAFEMPIESIFSP 62 Query: 77 SPT 79 Sbjct: 63 DED 65 >gi|327394419|dbj|BAK11841.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 153 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R+ R +G+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 >gi|318057395|ref|ZP_07976118.1| hypothetical protein SSA3_05613 [Streptomyces sp. SA3_actG] gi|318076536|ref|ZP_07983868.1| hypothetical protein SSA3_07397 [Streptomyces sp. SA3_actF] Length = 77 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIR R+ ++QE L E G+ + + + E G + L I+ L P++ Sbjct: 15 RAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTEGGTHSTLLDHLLLIARALGRPLAD 74 Query: 73 F 73 Sbjct: 75 L 75 >gi|291484297|dbj|BAI85372.1| hypothetical protein BSNT_02805 [Bacillus subtilis subsp. natto BEST195] Length = 128 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R + +SQE L E L + + YE G + + +S++ F Sbjct: 10 GMRIKQCRKAINISQEALAERLEMKRTNIANYEAGRVIPPGNVILELSKIFGVTTDFLLG 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S + + ++ Q+ R ++ + R ++ +V I Sbjct: 70 SSDNPIGKLDPLDEDL---------RQIQRAKTKLKNSADRDRMERMVEMI 111 >gi|260856429|ref|YP_003230320.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|257755078|dbj|BAI26580.1| predicted phage repressor protein CI [Escherichia coli O26:H11 str. 11368] Length = 235 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ G+SQ +L + +GI+ +QK G G+ ++ ++ L+ + Sbjct: 6 ERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTN-GSRKMVELANALKVRPEWLSSG 64 Query: 77 SPTVCSDISSEENNVMD 93 + E +NV D Sbjct: 65 IGEMRDGAHEEPSNVRD 81 >gi|239904800|ref|YP_002951538.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239794663|dbj|BAH73652.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 271 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG IR R +SQ L + ++ + + E G +R + I+E L+ P Sbjct: 12 RTVGDLIRFWRNTKKISQMDLALEVDVSTRHLSFVETGKSRPSRKLVFKIAESLKMP 68 >gi|256371092|ref|YP_003108916.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256007676|gb|ACU53243.1| transcriptional regulator, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 205 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R G+S + E G++ + + E+ L I++ + ++ F Sbjct: 8 IGERLRHAREQRGLSLAAVAERTGLSKGFLSRVERDGVSPSIDSLVAIADAVGLAVADVF 67 Query: 75 DVSPTVCS 82 V+P V S Sbjct: 68 AVAPVVVS 75 >gi|167622932|ref|YP_001673226.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352954|gb|ABZ75567.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 182 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ ++ R G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGENLKKVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVE 60 Query: 73 FFDVSPTVCSD 83 FF + T ++ Sbjct: 61 FFSIEDTQETE 71 >gi|117619340|ref|YP_857051.1| Cro/CI family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560747|gb|ABK37695.1| transcriptional regulator, Cro/CI family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 200 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R++ R +S ++L G++ + + EKG + L ++ L ++ Sbjct: 22 VSRRLKEYRQQGRLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKLAAALGVSVADIV 81 Query: 75 DVSPTVCSDISSEEN 89 DV+ T + + Sbjct: 82 DVASTPTVHLIEPQA 96 >gi|91206191|ref|YP_538546.1| Phage-related transcriptional regulator [Rickettsia bellii RML369-C] gi|157827799|ref|YP_001496863.1| Phage-related transcriptional regulator [Rickettsia bellii OSU 85-389] gi|91069735|gb|ABE05457.1| Phage-related transcriptional regulator [Rickettsia bellii RML369-C] gi|157803103|gb|ABV79826.1| Phage-related transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 120 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I++ R G+SQE+L +G T Q + EKG L+ +S VL + Sbjct: 66 IKVYREYRGLSQEQLATKIGKTKQYISAIEKGSRTGTIDTLKKLSTVLNIDLD 118 >gi|34497476|ref|NP_901691.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34103331|gb|AAQ59693.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 181 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R+R+ R G+SQ +L + G+T + E+ S L+ + E L ++ Sbjct: 1 MDVGARLRMVRTRFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPITLAE 60 Query: 73 FFDVSPTVCS 82 FF Sbjct: 61 FFTFDAEPAQ 70 >gi|312953700|ref|ZP_07772536.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310628374|gb|EFQ11657.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|315151831|gb|EFT95847.1| helix-turn-helix protein [Enterococcus faecalis TX0031] Length = 231 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR LG++Q ++ E L +T Q + +E + L +S + E + T+ Sbjct: 1 MRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLKEDNTM 60 Query: 81 CSDISSEENN 90 +S + Sbjct: 61 VEKLSKDIKE 70 >gi|297157691|gb|ADI07403.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 394 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 7/99 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P P D + G RI R G++Q L + + ++ + + E G + +++ L Sbjct: 1 MPFPGDEHTGTRIAHHRKRAGLTQRGLAQRVPYSYSLLTQVESGHKPASPDLVAAVAKAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTP--DGLQL 103 ++ T ++ + + + + P + L L Sbjct: 61 SIDVTAL-----TGQPYVTELQQDRLAALVRPIREALDL 94 >gi|296394319|ref|YP_003659203.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181466|gb|ADG98372.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 471 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V G R+R R+ G+SQ L L I+ + + E V + L +SE L Sbjct: 2 VKTYAGPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPLTVPLLVRLSETLGVDA 61 Query: 71 SFF 73 FF Sbjct: 62 EFF 64 >gi|291448916|ref|ZP_06588306.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291351863|gb|EFE78767.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 277 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D VG +R R +SQ +L + + + E G +R + ++E L+ P+ Sbjct: 7 DTGVGPLLRDWREQRRISQLELALRADSSARHISFIETGRSRPSEDMVLRLAEHLDVPV 65 >gi|258508090|ref|YP_003170841.1| phage-related transcriptional regulator Cro/CI family [Lactobacillus rhamnosus GG] gi|257148017|emb|CAR86990.1| Phage-related transcriptional regulator, Cro/CI family [Lactobacillus rhamnosus GG] Length = 112 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+R++ R M+Q +G+ + ++ V YEK ++ ++ F Sbjct: 2 MSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTDF 61 Query: 73 FFDVS-----PTVCSDISSEENNVMDFIST---PDGLQLNR 105 V+ P S+ + +M F P+ L++ + Sbjct: 62 LLGVTDVRSKPEQIDISDSKNDTIMTFEGRPIPPEDLEIIK 102 >gi|242399175|ref|YP_002994599.1| Putative HTH-type transcriptional regulatory protein TK0539 [Thermococcus sibiricus MM 739] gi|242265568|gb|ACS90250.1| Putative HTH-type transcriptional regulatory protein TK0539 [Thermococcus sibiricus MM 739] Length = 319 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GK +R R G S +L E LG++ + +Q YEKG + + E+ ++P++ Sbjct: 129 GKYLRELRESHGYSVGELAELLGVSRKSLQNYEKGEQAMSLEIALRLEELFDAPVA 184 >gi|229125166|ref|ZP_04254312.1| hypothetical protein bcere0016_54290 [Bacillus cereus 95/8201] gi|228658292|gb|EEL13986.1| hypothetical protein bcere0016_54290 [Bacillus cereus 95/8201] Length = 51 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 MSQE L +G+ + + E G I++VL++PI F Sbjct: 1 MSQEDLANEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLF 47 >gi|284031797|ref|YP_003381728.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811090|gb|ADB32929.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 198 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 6/94 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R ++ +L + GI+ + + E G+ R +L ++ V + Sbjct: 12 VGARLKHLRQRRTITLVELADQTGISISTLSRLEAGLRRPTLEQLLPLARVHGVTLDELV 71 Query: 75 DVSPTVCSDI------SSEENNVMDFISTPDGLQ 102 D PT + + + ++ P G+Q Sbjct: 72 DAPPTGNPRVTLRPIRADDGAVILPLTRRPGGIQ 105 >gi|237730277|ref|ZP_04560758.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2] gi|226905816|gb|EEH91734.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2] Length = 185 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R LG+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 75 DVSPTVCSDISSEENNVMDF 94 + + ++++++ Sbjct: 69 EPEKPDEPQVVINQDDLIEI 88 >gi|222055943|ref|YP_002538305.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221565232|gb|ACM21204.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 130 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 IR+ R +S L + G+T + + E G + + L I+ L+ + Sbjct: 66 IRVWREYRRLSAADLAKACGVTAAAISQIESGKRKSSVTLLHKIARTLKVDL 117 >gi|167770464|ref|ZP_02442517.1| hypothetical protein ANACOL_01809 [Anaerotruncus colihominis DSM 17241] gi|167667059|gb|EDS11189.1| hypothetical protein ANACOL_01809 [Anaerotruncus colihominis DSM 17241] Length = 112 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 14/116 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R L M+Q + LGIT E G N + ++ I ++ Sbjct: 3 ERLKQLRKALKMNQTNFAKELGITQTAYSMIENGNNPLSDRYIKVICSCFNVNENWLRTG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + F S+P + F + + +Q ++ + + ++++++K Sbjct: 63 NGDM-------------FFSSPYEKEFTEIFSHLA-PETQQYLLLMAKELLNTQQK 104 >gi|332297685|ref|YP_004439607.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180788|gb|AEE16476.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 107 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G+ IR R LG +QE+L E I+ + + E G +++IS+ L Sbjct: 2 NEIVAVLGQNIRKFRKNLGWTQEQLAEKAQISVPFMTQIELGRKSASLEVIENISKSLGV 61 Query: 69 PISFFF 74 P F Sbjct: 62 PYDALF 67 >gi|319939730|ref|ZP_08014087.1| XRE family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811068|gb|EFW07379.1| XRE family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 61 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R LG+SQ L + +G++ Q + E +++ L++ ++ F Sbjct: 4 VKDFRKNLGLSQLDLAKQIGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLF 59 >gi|325674855|ref|ZP_08154542.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325554441|gb|EGD24116.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 196 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R G + L GI+ + + E G + L ++ P+ Sbjct: 14 VGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLPLARAYGVPLD 70 >gi|293381958|ref|ZP_06627920.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312978379|ref|ZP_07790121.1| putative transcriptional regulator [Lactobacillus crispatus CTV-05] gi|290921465|gb|EFD98505.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310894722|gb|EFQ43794.1| putative transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 200 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I + QE L E + ++ Q V K+E + ++ +SE+ + Sbjct: 1 MRLGQKIAALHKKNHLFQEALAEKMNVSRQAVSKWESEQSIPDIEKIVALSELFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 +++ ++NN+ + Sbjct: 61 LLKSGSPSF-ELNHKDNNLTE 80 >gi|228477794|ref|ZP_04062422.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250486|gb|EEK09700.1| conserved domain protein [Streptococcus salivarius SK126] Length = 66 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ ++Q+ L + +G++ Q + EKG + I + L+ + F Sbjct: 5 KMKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLF 61 >gi|226326318|ref|ZP_03801836.1| hypothetical protein PROPEN_00166 [Proteus penneri ATCC 35198] gi|225205269|gb|EEG87623.1| hypothetical protein PROPEN_00166 [Proteus penneri ATCC 35198] Length = 122 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ KR + +R+ LG++Q +L T Q +++ E G + L +++ L +++ Sbjct: 1 MSIAKRTKDKRIALGLTQSELATLASTTQQSIEQLESGKTK-RPRFLPELAKALNCDLAW 59 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + N +S Sbjct: 60 LLGGEEQTNATSEIPPENEWQPVS 83 >gi|182624278|ref|ZP_02952063.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177910496|gb|EDT72869.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 223 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+RI+ R GM+Q+ L + LG+ + V + E G + S + +S+VL + ++ Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLN 60 >gi|169343406|ref|ZP_02864410.1| regulator SinR [Clostridium perfringens C str. JGS1495] gi|169298492|gb|EDS80578.1| regulator SinR [Clostridium perfringens C str. JGS1495] Length = 204 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 ++I R G+S+ +L +G++ + K E G + I+ VLE PI+ F + Sbjct: 5 EKITFYREKKGISKSQLAREIGVSPAYITKLENGEKSNPSLELKIKIANVLEQPITVFLE 64 Query: 76 VS 77 Sbjct: 65 ND 66 Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 38/79 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ N+G +I+ +++ ++ E+L + GI +++ + G L+ IS+ L+ Sbjct: 68 VNNNIGSKIKSAKILNNLNDEQLSKITGIDKLKLRSIQDGEINPTKIELEIISKALKLQA 127 Query: 71 SFFFDVSPTVCSDISSEEN 89 +F S + + E+ Sbjct: 128 DYFTKDSNVNIDETGNIED 146 >gi|163746322|ref|ZP_02153680.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] gi|161380207|gb|EDQ04618.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 195 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +R R ++ + E L + V + E+ ++ + L+ I+EVL PIS Sbjct: 15 RSLGADLRAIRKGRKLTLTDMAEALDRSVGWVSQVERDISTPSIADLRRIAEVLGVPISL 74 Query: 73 FF 74 F Sbjct: 75 LF 76 >gi|158421618|ref|YP_001527845.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300] gi|158342861|gb|ABW35147.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300] Length = 610 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN---RVGASRLQHI 62 +P P+D +R R L ++QE+L E LG++F V ++E G N R + + Sbjct: 3 NMPPPIDFP--ALLRTIRSALDLTQEQLAERLGVSFATVNRWEGGGNKPQRAAQETILAL 60 Query: 63 SEVLES 68 + Sbjct: 61 AREAGV 66 >gi|111657932|ref|ZP_01408641.1| hypothetical protein SpneT_02000878 [Streptococcus pneumoniae TIGR4] Length = 271 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 28 MSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 MSQ +L E GI Q Q+ + E G GA L +++ L+ + +FFD + S Sbjct: 1 MSQRELAE--GICKQGQISRLESGEFTPGADFLNALAKKLKVSMDYFFDEQVVEKVEELS 58 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVK 114 E + T + +Y ++++VK Sbjct: 59 EFKKLAQTFITNRNYESLKYIYELENVK 86 >gi|119943935|ref|YP_941615.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii 37] gi|119862539|gb|ABM02016.1| predicted DNA-binding transcriptional regulator, helix-turn-helix domain [Psychromonas ingrahamii 37] Length = 74 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGEC-----LGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK+IR R G++QE+L ++ + K E +V +++ ++ L+ Sbjct: 4 IGKKIREIRKQRGLTQEQLAAACCLLGFDLSRSTLAKVESQNRQVTDYEIRYFAQALKVS 63 Query: 70 ISFFF 74 FF Sbjct: 64 EGDFF 68 >gi|56962741|ref|YP_174467.1| DNA-binding protein [Bacillus clausii KSM-K16] gi|56908979|dbj|BAD63506.1| DNA-binding protein [Bacillus clausii KSM-K16] Length = 68 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+++ R M+Q +L E +G+T Q + EKG I++ E P+ Sbjct: 1 MEIENRVKVLRAEKRMTQGELAEAVGVTRQTIVALEKGRYSPSLLLAFQIAKQFELPVED 60 Query: 73 FF 74 F Sbjct: 61 VF 62 >gi|14520527|ref|NP_126002.1| inosine-5'-monophosphate dehydrogenase-like protein I [Pyrococcus abyssi GE5] gi|5457743|emb|CAB49233.1| Predicted transcriptional regulator [Pyrococcus abyssi GE5] Length = 192 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IP P+D + I+ R LG++QE+L G+T + K E G S I L Sbjct: 4 IPRPIDP---RDIKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60 >gi|325475695|gb|EGC78871.1| DNA-binding protein [Treponema denticola F0402] Length = 93 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 23/68 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G+SQ +L I+ + E G L I L + F Sbjct: 14 NRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALNINPAVLFSD 73 Query: 77 SPTVCSDI 84 + ++ Sbjct: 74 TEEEKAEA 81 >gi|321314263|ref|YP_004206550.1| putative xre family transcriptional regulator [Bacillus subtilis BSn5] gi|320020537|gb|ADV95523.1| putative xre family transcriptional regulator [Bacillus subtilis BSn5] Length = 80 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ +R+ G++Q+ + + GI E+G G + IS+VL+ + FFD Sbjct: 9 LKHKRLSKGLTQKGVADKAGIARTTYASIEQGERNAGVPTAKAISQVLDFHWTIFFD 65 >gi|299532071|ref|ZP_07045466.1| transcriptional regulator, XRE family with [Comamonas testosteroni S44] gi|298719986|gb|EFI60948.1| transcriptional regulator, XRE family with [Comamonas testosteroni S44] Length = 191 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G +R RR LG++ ++L + G++ + + E+G+ I++ L + Sbjct: 13 DALFGAAVRARRAQLGITLDQLAQASGVSPGALSRVERGLLATSLRNAMAIAQGLGCELG 72 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +P+ + E +D S + L L Sbjct: 73 ELVQSAPSAQITRAGENLRFVDEASGVERLALA 105 >gi|294789244|ref|ZP_06754483.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] gi|294482985|gb|EFG30673.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] Length = 136 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++IRL R + SQE++ E L ++ + E+G R+ RL+ I+++L IS Sbjct: 5 EKIRLARELNQWSQEEMAEKLEMSPSGYARIERGEVRLNIERLEQIAQILNIDISDL 61 >gi|326319216|ref|YP_004236888.1| helix-turn-helix domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376052|gb|ADX48321.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 92 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ R G++Q + LG+T Q E+ +GA+RL + VL Sbjct: 16 LQAFRKQSGLTQSDVALRLGVTQQTYSALERNAGNMGAARLLQLLSVLGV 65 >gi|259649410|dbj|BAI41572.1| hypothetical phage protein [Lactobacillus rhamnosus GG] Length = 111 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+R++ R M+Q +G+ + ++ V YEK ++ ++ F Sbjct: 1 MSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTDF 60 Query: 73 FFDVS-----PTVCSDISSEENNVMDFIST---PDGLQLNR 105 V+ P S+ + +M F P+ L++ + Sbjct: 61 LLGVTDVRSKPEQIDISDSKNDTIMTFEGRPIPPEDLEIIK 101 >gi|257066291|ref|YP_003152547.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798171|gb|ACV28826.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 73 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R+ G+SQ+++ + L +T + YE G + ++ S + + + F Sbjct: 12 VGNRLKKLRLSRGLSQKEMADILKVTRPLISMYEAGNRMPSPNIMKKYSIIFKKSVDDIF 71 >gi|227877994|ref|ZP_03995996.1| helix-turn-helix domain protein [Lactobacillus crispatus JV-V01] gi|256844374|ref|ZP_05549860.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256849226|ref|ZP_05554659.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047242|ref|ZP_06020200.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|227862415|gb|EEJ69932.1| helix-turn-helix domain protein [Lactobacillus crispatus JV-V01] gi|256613452|gb|EEU18655.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256714002|gb|EEU28990.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260572487|gb|EEX29049.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] Length = 226 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I + QE L E + ++ Q V K+E + ++ +SE+ + Sbjct: 27 MRLGQKIAALHKKNHLFQEALAEKMNVSRQAVSKWESEQSIPDIEKIVALSELFGVTTDY 86 Query: 73 FFDVSPTVCSDISSEENNVMD 93 +++ ++NN+ + Sbjct: 87 LLKSGSPSF-ELNHKDNNLTE 106 >gi|196251156|ref|ZP_03149833.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196209320|gb|EDY04102.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 136 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESP 69 V N G +R R G S ++L E G++ + + EKG R I+E L P Sbjct: 8 VSNNFGSTLRYWREKRGYSLQQLYEKTGVSAGYLNRLEKGERRAPSIPIASKIAEALGIP 67 Query: 70 ISFFFDVSPTV 80 +S D+S T Sbjct: 68 LSLLLDISTTE 78 >gi|167725784|ref|ZP_02409020.1| GP52 family protein [Burkholderia pseudomallei DM98] Length = 115 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 10/103 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP G+R + RR LG+SQ+ + E +G++ + K E+G + + ++ L Sbjct: 1 MENP---EFGRRAKERREALGLSQKHVAELVGVSQPAIAKVERGGST-TTTNGFALARAL 56 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + + + V I + + + D G +I Sbjct: 57 LTTLEWL-EFGDEVGPQIPAGYDQLDDL-----GRAKVEAYIS 93 >gi|163790416|ref|ZP_02184847.1| putative transcriptional regulator [Carnobacterium sp. AT7] gi|159874320|gb|EDP68393.1| putative transcriptional regulator [Carnobacterium sp. AT7] Length = 65 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R MSQ++L + + +T Q + E+G + I + ++ F Sbjct: 6 RLKVARTKKDMSQQQLADAVNVTRQTISAIERGDYNPTINLCIEICKEFNLTLNDLF 62 >gi|228952839|ref|ZP_04114909.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806882|gb|EEM53431.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 292 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|229100213|ref|ZP_04231113.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] gi|228683255|gb|EEL37233.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] Length = 114 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G+ ++ R ++Q +L E L ++ Q++ +E G + L I+ + Sbjct: 2 IIFGQTLKQLRKSRDLTQSELAEILNLSQSQIKNWETGRFQPDIQTLASIASFFNVSLDV 61 Query: 73 F------FDVSP 78 F+ P Sbjct: 62 LVGFSNNFEDEP 73 >gi|261339303|ref|ZP_05967161.1| hypothetical protein ENTCAN_05544 [Enterobacter cancerogenus ATCC 35316] gi|288319163|gb|EFC58101.1| transcriptional regulator, Cro/CI family [Enterobacter cancerogenus ATCC 35316] Length = 185 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R LG+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMD 93 + + ++++++ Sbjct: 69 EPEKPDEPQVVINQDDLIE 87 >gi|198276387|ref|ZP_03208918.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135] gi|198270829|gb|EDY95099.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135] Length = 120 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+ +R RR LGM+Q++L E +G + + E+G + S I+E L Sbjct: 59 GEILRERRKELGMTQKELAERVGRERTYINRIERGETDLQLSSFIRIAEALGI 111 >gi|157691284|ref|YP_001485746.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157680042|gb|ABV61186.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 184 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K +RL R +S EK+ E G++ + + E+G + + L I+ L+ S Sbjct: 8 ISKNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVSFSELI 67 Query: 75 DVSPTVCSDISSEENNVM 92 + E+ ++ Sbjct: 68 HAPQPEIKVVRHEDAQIL 85 >gi|154500782|ref|ZP_02038820.1| hypothetical protein BACCAP_04460 [Bacteroides capillosus ATCC 29799] gi|150270399|gb|EDM97722.1| hypothetical protein BACCAP_04460 [Bacteroides capillosus ATCC 29799] Length = 103 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 IR R +Q+++ + L + + YE GVN + L ++++ ++ + + Sbjct: 29 IRALREDRDWTQQQVADMLYLNRRTYSAYENGVNTITPELLIQLADLYQTSVDYL 83 >gi|20808559|ref|NP_623730.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517186|gb|AAM25334.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 123 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R ++ L + G++ + E + ++ L + L I + Sbjct: 4 VGERIRYARKKNNLTIPALSKLTGLSPGNLSDLENNKSMPSSNALIKLKNALNVSIDWL- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + S++ EE + + L L + ++ + + R Sbjct: 63 -LTGEMPSEVKEEEEKYS--VDKSEDL-LLKAIKELPEERKR 100 >gi|306827184|ref|ZP_07460474.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|304430640|gb|EFM33659.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 245 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 11/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R M+Q++L + G + +E G ++ ++ ++ L+ F Sbjct: 4 LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQLF 63 Query: 75 DVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S + + + + + ST L+ +R QI +++ +++ +K+ Sbjct: 64 DYSSSPTNPQVELIPSTLQKINSTSSQLEHSR---QI-------IVLDTAETLLEQQKEI 113 Query: 134 RTIEE 138 + E+ Sbjct: 114 KNNED 118 >gi|295101684|emb|CBK99229.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 255 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G + R GM+Q++L L ++ + V K+E+G++ S L ++E L ++ Sbjct: 10 GHFLAQLRREKGMTQKELAATLYVSDKAVSKWERGLSVPDISLLVPLAEQLNVTVA 65 >gi|262044546|ref|ZP_06017602.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038090|gb|EEW39305.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 193 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ + RIR+ R G S L E G + + K E+G + AS L +S Sbjct: 4 IEDNLNQRISARIRIERESRGWSLNDLAELAGASRAMIHKIERGESSPTASMLGRLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|257056813|ref|YP_003134645.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586685|gb|ACU97818.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 475 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R R MSQ +L L I+ + + E + L I+E FF Sbjct: 7 GARLRHLRESRSMSQAELARLLEISPSYLNQIEHNTRPLTVPVLLRITEAFGVDAEFF 64 >gi|251778140|ref|ZP_04821060.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082455|gb|EES48345.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 113 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ ++QE+ G+ + V +YE G +R + I+ + + Sbjct: 6 LGNRIKTLRLESKLTQEEFGKPYALKKSTVSQYESGSSRPDDELKKRIALDYNVSLDWLM 65 Query: 75 DVSPT 79 ++ Sbjct: 66 GLTDA 70 >gi|228949735|ref|ZP_04111960.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809949|gb|EEM56345.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 142 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 2 IGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSISADYL 60 >gi|229060102|ref|ZP_04197472.1| Transcriptional regulator,Cro/CI [Bacillus cereus AH603] gi|228719142|gb|EEL70752.1| Transcriptional regulator,Cro/CI [Bacillus cereus AH603] Length = 66 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RI + R G +Q+ LGE +G + Q + E+ I++ P+ F+ Sbjct: 4 NRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAKAFGKPLEEVFE 62 >gi|166033316|ref|ZP_02236145.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] gi|166027673|gb|EDR46430.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 20 VTELRKKKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVT 72 >gi|15801392|ref|NP_287409.1| hypothetical protein Z1932 [Escherichia coli O157:H7 EDL933] gi|12514864|gb|AAG56021.1|AE005334_8 orf; hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 111 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 4 NKKIPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K+ N + D ++ + + R ++ +L + G++ + K E+G + A+ L + Sbjct: 8 DKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRL 67 Query: 63 SEVLESPISFFF 74 + L +S F Sbjct: 68 ANALNITLSKLF 79 >gi|269216324|ref|ZP_06160178.1| DNA-binding protein [Slackia exigua ATCC 700122] gi|269130583|gb|EEZ61661.1| DNA-binding protein [Slackia exigua ATCC 700122] Length = 198 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R +SQ+ L + ++ Q + +E L +S + + Sbjct: 6 QIKRLRSENDLSQDDLASRIYVSRQTISNWENDKTYPDVQSLLLLSATFDVSVDSLIKGD 65 Query: 78 PTVCSDISSEEN 89 T +I ++ Sbjct: 66 VTAMEEIIGNKD 77 >gi|253681078|ref|ZP_04861881.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253562927|gb|EES92373.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 221 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 44/83 (53%), Gaps = 8/83 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-----ESP 69 +G +IR R+ +++++L + +G++ + +++ E G + S + IS+VL + Sbjct: 4 IGSKIREARLKSNITEKQLAKKIGVSEKFIKEVESGKKVINESVMGKISKVLGKDLNDVT 63 Query: 70 ISF---FFDVSPTVCSDISSEEN 89 +SF F++ + ++ + E Sbjct: 64 MSFEAEFYEEEKSQNTNKKTVET 86 >gi|126172576|ref|YP_001048725.1| XRE family transcriptional regulator [Shewanella baltica OS155] gi|125995781|gb|ABN59856.1| transcriptional regulator, XRE family [Shewanella baltica OS155] Length = 191 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNFSL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F + +P + + + + +T L Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML 94 >gi|329732814|gb|EGG69161.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 77 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ +R + G SQE+ L ++ Q V K+E N L +S++ + Sbjct: 7 IKEQRELKGWSQEESANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHLIKGD 65 >gi|319652442|ref|ZP_08006558.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2] gi|317395904|gb|EFV76626.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2] Length = 181 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+I+ R+ G + ++L E ++ + + E+G + + L+ I++ L IS FF+ Sbjct: 6 KKIKDLRLQKGYTLKELSERTELSISFLSQVERGATSLAITSLKKIADALNVKISEFFED 65 Query: 77 SPTVCS 82 + Sbjct: 66 ETPNQN 71 >gi|317499138|ref|ZP_07957415.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893551|gb|EFV15756.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 98 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 8/89 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G +QE++ + L +T + E ++ L + +++L I + Sbjct: 1 MKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLL---- 56 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYF 107 S+EN D + + L+L F Sbjct: 57 ----RPESDENGEKDDVLNKEILRLLEKF 81 >gi|309778346|ref|ZP_07673272.1| putative transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308913912|gb|EFP59726.1| putative transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 115 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 14/120 (11%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +DI I + ++ ++Q +L + +G++ + + Y ++ L I +V Sbjct: 4 KKDFIDI-----IASKMEMMNITQTELAKKVGVSRRSMSSYMCKISEPSLETLARICKVC 58 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E ++ F I + E + D D +QL + + ++DDV+ + K IE+ S+ Sbjct: 59 ELDFNYIF--------GIIANEECISDLFLKQDEMQLVKLYRELDDVQ-KNKFIEVAESL 109 >gi|306846135|ref|ZP_07478697.1| XRE family transcriptional regulator [Brucella sp. BO1] gi|306273386|gb|EFM55247.1| XRE family transcriptional regulator [Brucella sp. BO1] Length = 182 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 3 IDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPIGM 60 Query: 73 --FFDVSPTVCSDISSEENNVMDF 94 FF + P + + +++ Sbjct: 61 AEFFALEPDAPHRVFYQAEELVEI 84 >gi|300854943|ref|YP_003779927.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435058|gb|ADK14825.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 64 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I++ R LG+ QE + L +T Q + E ++++L + + F Sbjct: 3 NNIKVLRKQLGLRQEDVANALNVTRQTINAIENSKYNPTLELAMRLAKLLNTTVDELF 60 >gi|229109238|ref|ZP_04238837.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|228674248|gb|EEL29493.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] Length = 404 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTALAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDEGEIVEL 72 >gi|300776142|ref|ZP_07086001.1| regulatory protein [Chryseobacterium gleum ATCC 35910] gi|300505275|gb|EFK36414.1| regulatory protein [Chryseobacterium gleum ATCC 35910] Length = 130 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 1/95 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++RL R G +Q+++ + + + E G R+ ++ L+ PI ++ Sbjct: 4 EKLRLIRKQKGYTQQQVADFIATDVSNYSRKESGDVRIIRDEWDKLARFLDVPIEDIYEE 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 I+++ D S+ + + I Sbjct: 64 DEPAVI-INNDHPVFNDRSSSAGVITNQNNYDNIP 97 >gi|255602033|ref|XP_002537801.1| conserved hypothetical protein [Ricinus communis] gi|223515025|gb|EEF24581.1| conserved hypothetical protein [Ricinus communis] Length = 137 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 29/70 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R+ L +Q GIT Q + E G V L I +VL P+S Sbjct: 7 IGQVIRTERLNLKQTQASFAALCGITPQYLSLLELGDVNVSLDTLLMICKVLNKPLSVLM 66 Query: 75 DVSPTVCSDI 84 + + I Sbjct: 67 ATAEDLAKGI 76 >gi|210614628|ref|ZP_03290239.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787] gi|210150618|gb|EEA81627.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787] Length = 118 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVL 60 >gi|169351502|ref|ZP_02868440.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM 1552] gi|169291724|gb|EDS73857.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM 1552] Length = 73 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 34/67 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ G+R++ R+ +SQE+L G++ + E+G + ++ I++ L Sbjct: 5 DKIEMRFGQRVKELRLKQNISQEELAFRCGLSKNYISDVERGTRNISLKSIEKIADGLAI 64 Query: 69 PISFFFD 75 I F+ Sbjct: 65 RIKELFE 71 >gi|154686724|ref|YP_001421885.1| SinR [Bacillus amyloliquefaciens FZB42] gi|154352575|gb|ABS74654.1| SinR [Bacillus amyloliquefaciens FZB42] Length = 113 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 64 LDEKHETEYDGQLDSE 79 >gi|325972297|ref|YP_004248488.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027535|gb|ADY14294.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 111 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +G R++ R G+ Q+ + + LG+ + ++E G + ++ L+ ++ + P Sbjct: 3 IDNVAIGNRLKELRKQSGLMQKHIADYLGVDQSLIARFENGDRAMTSATLEKLAMLYCCP 62 Query: 70 ISFFFDVSPTVCS---DISSEENNVMDFISTPD 99 S P S ++ ++ D +S + Sbjct: 63 ASKILSGEPCNTSLKFSFRTDNASMKDLVSLAE 95 >gi|312602253|ref|YP_004022098.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] gi|312169567|emb|CBW76579.1| Transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] Length = 320 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 10/107 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+R+RL R GM+++ L G++ + + E GV L+ I+ L Sbjct: 35 DPFLTAMGERVRLLRARRGMTRKSLAAETGLSERHLANLESGVGNASVLVLRQIALALNC 94 Query: 69 PISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRYFIQIDD 112 P++ V D ++ + + D L R + + D Sbjct: 95 PLA-------EVIGDETTSSAEWLLIRQLLHGRDPASLQRARMALAD 134 >gi|311279020|ref|YP_003941251.1| Cupin 2 conserved barrel domain-containing protein [Enterobacter cloacae SCF1] gi|308748215|gb|ADO47967.1| Cupin 2 conserved barrel domain protein [Enterobacter cloacae SCF1] Length = 185 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R LG+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 75 DVSPTVCSDISSEENNVMDF 94 + + ++ +++ Sbjct: 69 EPEKPDEPQVVINQDELIEI 88 >gi|238061301|ref|ZP_04606010.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883112|gb|EEP71940.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 481 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +P+ VG IR R +S +L E G++ + + E+G+ + A LQ Sbjct: 1 MATPKDLPD-----VGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQ 55 Query: 61 HISEVLESP 69 ++ L Sbjct: 56 QLASALRVS 64 >gi|217967677|ref|YP_002353183.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336776|gb|ACK42569.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 110 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R G+++++L +G++ + +YE+ + L+ ISEVL+ I + Sbjct: 10 ISERLKEVREKRGLTKKELALKIGVSPSTITRYEEEGRVPKLTILKRISEVLDVSIDYL 68 >gi|207721990|ref|YP_002252428.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] gi|206587163|emb|CAQ17747.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] Length = 209 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ + +R+R R G + + L G++ + E+G A+ L ++ L + Sbjct: 16 VNERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLAAGLGISL 75 Query: 71 SFFFDVS 77 + F Sbjct: 76 ASLFGGE 82 >gi|190574387|ref|YP_001972232.1| putative transcriptional repressor protein [Stenotrophomonas maltophilia K279a] gi|190012309|emb|CAQ45935.1| putative transcriptional repressor protein [Stenotrophomonas maltophilia K279a] Length = 108 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ++LG G + ++ +YE+G + + +++ L P +F Sbjct: 13 RRLKQARLHTGLSQKELGIRAGLDPHVASPRINQYERGKHEPMLEIAERLAQALGIPAAF 72 Query: 73 FF 74 + Sbjct: 73 LY 74 >gi|170719389|ref|YP_001747077.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169757392|gb|ACA70708.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 182 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + P+S Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLS--GIPMSM 58 Query: 73 --FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ + I + + ++D ++L Sbjct: 59 VEFFSVELEAESHAQIVYKAHELIDISDGAVTMKLV 94 >gi|24378683|ref|NP_720638.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|290579667|ref|YP_003484059.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|24376546|gb|AAN57944.1|AE014868_6 putative transcriptional regulator [Streptococcus mutans UA159] gi|254996566|dbj|BAH87167.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 64 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R +SQ+ L + +G++ Q + EKG + I + L+ + F Sbjct: 5 RLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIKICKALDKSLDELF 61 >gi|330832565|ref|YP_004401390.1| nucleotide sugar dehydrogenase [Streptococcus suis ST3] gi|329306788|gb|AEB81204.1| nucleotide sugar dehydrogenase [Streptococcus suis ST3] Length = 496 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I +R LG SQ++L + GI + K E+G +L +S VL+ I+ F Sbjct: 15 IFSKRKELGYSQQELSDLTGINRAMISKLEQGEYLPSIPQLLSLSNVLDFEINSLF 70 >gi|325282527|ref|YP_004255068.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] gi|324314336|gb|ADY25451.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] Length = 67 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI++ R G++Q +L + L ++ Q V E G ++ + I F Sbjct: 3 NRIKVLRAEHGLTQAELADRLDVSRQTVNALETGKYDPSLPLAFRLARLFGLRIEDIFQD 62 Query: 77 SPTVC 81 Sbjct: 63 EEAGG 67 >gi|294809717|ref|ZP_06768405.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|294443092|gb|EFG11871.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 195 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + K+I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + Sbjct: 9 RLLAKKIKALREDKSISIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRLGT 68 Query: 73 FFDVSPTVCS 82 F D V Sbjct: 69 FLDDQDEVGP 78 >gi|239627867|ref|ZP_04670898.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518013|gb|EEQ57879.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 173 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI+ R GM+Q++LGE LG + ++ +YE ++ ++ + + Sbjct: 1 MAIGQRIKFFRNRKGMTQKQLGEILGFLGKTSDVRMAQYESEARVPKIDLVKEMAGIFDV 60 Query: 69 P 69 Sbjct: 61 S 61 >gi|221234777|ref|YP_002517213.1| MerR family transcriptional regulator [Caulobacter crescentus NA1000] gi|220963949|gb|ACL95305.1| transcriptional regulator, MerR family [Caulobacter crescentus NA1000] Length = 480 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 11/133 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K N + +G R++ R LG++Q ++ E LG++ + E+ V A L Sbjct: 1 MATLEKKQNDKKLFLGGRLKRLRRDLGVTQARMAEELGVSASYLNLLERNQRPVTAQILL 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISS--EENNVMDF-ISTPDGLQLNRYFIQIDDVKV-- 115 +++ + + P + + + D +S + ++ I + Sbjct: 61 RLADAYDLDLRSLSADDPGGGAGLEEVLADRMFADLAVSRHEAAEVAELSPGIAEAMSRL 120 Query: 116 ------RQKIIEL 122 R ++I+L Sbjct: 121 YRAYLDRGRLIDL 133 >gi|182625431|ref|ZP_02953203.1| LexA repressor [Clostridium perfringens D str. JGS1721] gi|177909271|gb|EDT71729.1| LexA repressor [Clostridium perfringens D str. JGS1721] Length = 358 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV- 76 I+ R +SQ +L E LG+ + YE+ L +S+++ I + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNCSIDSLLGLN 71 Query: 77 -SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +D+++ + + FI + + F ++ +R + + + S+K+ Sbjct: 72 HPNETTNDLNNLDLSKKIFILNKLIEKNTQSFNDLETSNIRNA--RMFKELEMSKKRTER 129 Query: 136 IEEEC 140 + E Sbjct: 130 MFNEL 134 >gi|171778925|ref|ZP_02919987.1| hypothetical protein STRINF_00848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282571|gb|EDT47995.1| hypothetical protein STRINF_00848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 65 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R +SQ +L E LG+T Q + EKG I+E I F Sbjct: 4 RIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAEYFGMTIEEIF 60 >gi|218897425|ref|YP_002445836.1| transcriptional regulator, XRE family [Bacillus cereus G9842] gi|218544646|gb|ACK97040.1| transcriptional regulator, XRE family [Bacillus cereus G9842] Length = 292 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|218235687|ref|YP_002367168.1| transcriptional regulator, XRE family [Bacillus cereus B4264] gi|218163644|gb|ACK63636.1| transcriptional regulator, XRE family [Bacillus cereus B4264] Length = 292 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|167589656|ref|ZP_02382044.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 76 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +R R SQE+L E G+ V + E+G + I+ + IS Sbjct: 6 RHFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASLVTVDKIARAFDVSIST 65 Query: 73 FFDVSPTV 80 + Sbjct: 66 LLSGTADA 73 >gi|167462690|ref|ZP_02327779.1| DNA-binding protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384965|ref|ZP_08058621.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150262|gb|EFX43769.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 241 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI+ R L +Q+++ E GI+ + EK S ++ I+E + + Sbjct: 1 MKIGDRIKNIRKALRYTQKEVAENAGISRMYLSDVEKNRYNPSLSVIEKIAEAMGISVD 59 >gi|160942751|ref|ZP_02089992.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium prausnitzii M21/2] gi|158445916|gb|EDP22919.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium prausnitzii M21/2] Length = 220 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 9/116 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G + R G++Q +L E L +T + V ++E+G+ + L+ +++ L ++ Sbjct: 4 RTFGNYLSRMRKAQGLTQAELAEQLHVTDKAVSRWERGIGLPDINTLEPLADALGLTLAD 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIV 127 +D + + DF + L R I D VR ++ L ++ Sbjct: 64 LMHCRAPEEADAAPTI-PLEDFFT-----MLRR--QHIVDWHSVRTALLGLSIALA 111 >gi|86156777|ref|YP_463562.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773288|gb|ABC80125.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 277 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 18/112 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R G SQ L G++ + + E G + + ++EVL P+ Sbjct: 13 VGPLLRAWRTARGKSQLALALEAGVSSRHLSYLENGRSTPSREMVLDLAEVLGVPL---- 68 Query: 75 DVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + F TP D L +VR+ ++ ++ + Sbjct: 69 ----RERNALLQAAGYAAVFRETPLDAPDLA---------EVRRALLHVLEA 107 >gi|304440189|ref|ZP_07400079.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371238|gb|EFM24854.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 182 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PIS 71 +++G +++L R+ ++Q++L + +T + + E+ + + L I E L + PI Sbjct: 5 MDIGNKLKLIRISQNLTQDELAKRSELTKGFISQVERNLTSPSVTTLIDILEALGTSPIE 64 Query: 72 FFFDVS 77 FF D Sbjct: 65 FFKDDE 70 >gi|291536677|emb|CBL09789.1| transcriptional regulator, XRE family [Roseburia intestinalis M50/1] Length = 68 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R G+SQEKL + V E G L+ I L+ FF Sbjct: 6 IGSRIKELRKEKGISQEKLAFSADLDRTYVAGVESGKRNPSVKSLEKILVALDVSFEEFF 65 >gi|271967718|ref|YP_003341914.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270510893|gb|ACZ89171.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 175 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +R R +SQ + LG T QV + EK S + + + ++P S Sbjct: 14 VLFGTEMRRLREAAELSQVAVASRLGCTQTQVSRLEKATRTPSRSDAERLDRLFKTPSSS 73 Query: 73 FF 74 FF Sbjct: 74 FF 75 >gi|229058432|ref|ZP_04196816.1| Transcriptional regulator, Xre [Bacillus cereus AH603] gi|228719941|gb|EEL71531.1| Transcriptional regulator, Xre [Bacillus cereus AH603] Length = 404 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+ L SF Sbjct: 4 LGEKIKALRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKTLQYIANKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDAEIVEL 72 >gi|227873975|ref|ZP_03992191.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840183|gb|EEJ50597.1| transcriptional regulator [Oribacterium sinus F0268] Length = 67 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R +SQ++L + +G++ Q + EKG I VL + F Sbjct: 5 RLKSARAGKDLSQQELADLVGVSRQTINAIEKGDYNPTIRLCLAICHVLGKTLDELF 61 >gi|168206983|ref|ZP_02632988.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170661637|gb|EDT14320.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 368 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R ++Q++L E L I+ + YE L + S +L I D S Sbjct: 10 IKKYRKDNNLTQQQLAEKLDISRSVLSYYENTNAEPNLYFLYNFSRLLNCTIDELVD-SA 68 Query: 79 TVCSDISSEENNVMDF 94 + D S + +F Sbjct: 69 DIFDDFSLSQTPQNEF 84 >gi|160901295|ref|YP_001566877.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366879|gb|ABX38492.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 470 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++R R G+SQ L LG++ + + E+ + S L ++ L I F Sbjct: 5 FMGVKLRKLRAEHGLSQIALAHALGLSPSYLNQLEQNQRPLTVSVLLKLNRALGVDIQQF 64 Query: 74 FDVSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKV---RQKIIEL--VRSIV 127 + E + I+ P+ ++ + + R+ + L + S+ Sbjct: 65 SEDEEARLVAGLREALAESPESIALPELQEVAAQMPALGRAVMALHRRHLEALERIESMA 124 >gi|146301370|ref|YP_001195961.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155788|gb|ABQ06642.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 135 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G++I R + M QE L + +G Q + E + +L +++ L + Sbjct: 9 HMGRKISRIRELKDMKQEALAQAMGTNQQAISIMENSET-IEEEKLIEVAKALGVSV 64 >gi|56961997|ref|YP_173719.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56908231|dbj|BAD62758.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 63 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG++Q +L + + ++ Q + EK +++ L + F Sbjct: 3 NRVKQARRDLGLTQGELADKVNVSRQTIGLIEKNHYNPSLKLCIALAKALNKTLDQLF 60 >gi|89070253|ref|ZP_01157577.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus HTCC2516] gi|89044173|gb|EAR50331.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus HTCC2516] Length = 187 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 16/122 (13%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 D V +R+R+ R G+SQ +L G+ + + E + + L+ I + P Sbjct: 5 SHDQMVAQRLRVVRQSRGLSQRELARRTGVGSGTISQIESMATQPSVAVLKKILD--GVP 62 Query: 70 IS---FF-FDVSPTVCSDISSEENN----------VMDFISTPDGLQLNRYFIQIDDVKV 115 + FF F+++ EE+ ++ LQ+ F Q Sbjct: 63 MDLATFFSFELALGDAPVFRKEEHVDIGAPGVAYRLVAAQRPNRALQMLHEFYQPGRDSG 122 Query: 116 RQ 117 R+ Sbjct: 123 RR 124 >gi|332362047|gb|EGJ39849.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G I+ R ++Q + +GI+ + +YE G++ + + I + Sbjct: 2 IGDNIKSLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVS 56 >gi|317405899|gb|EFV86181.1| AroK1 protein [Achromobacter xylosoxidans C54] Length = 303 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 10/97 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R I GM+++ L + G++ + + E GV L I++ Sbjct: 20 VALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILVLLQIAKAFNC---- 75 Query: 73 FFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY 106 + D+++E + + + +S L R Sbjct: 76 ---ALAELVGDVTTESPDWLLIRELLSGRTESDLQRA 109 >gi|291294894|ref|YP_003506292.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290469853|gb|ADD27272.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 238 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 19/141 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN---RVGASRLQHISEVLESP-IS 71 G+ ++ RR LG+S+E L G++ + K E+G + V RL + L P I Sbjct: 21 GRLLQTRREKLGLSREALALAAGVSPSLIAKLEQGNHDLRDVSVGRLHALLRTLHLPSID 80 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI-IELVRS----- 125 F PT S+ + + S+ L L ++ R L+ + Sbjct: 81 FLLGEGPTEEFTPSAPGITPLPYYSS---LTLA---CAGEEASTRSHFDTRLLPTRPSYT 134 Query: 126 ---IVSSEKKYRTIEEECMVE 143 + E+ E+ +VE Sbjct: 135 NFFLAILEQDVLRSEDLSLVE 155 >gi|257874773|ref|ZP_05654426.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257808939|gb|EEV37759.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 112 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 8/109 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ +Q+++ E +GIT YE G S LQ ++++ + Sbjct: 6 IKELRLKKNFTQQEIAERIGITRPAYTAYELGKREPDFSTLQALADLFGVSTDQL--LGR 63 Query: 79 TVCSDISSEENNVM-----DFISTPDGLQLNRYFIQ-IDDVKVRQKIIE 121 SD EN+V+ D +P+G+Q FI I + ++K I+ Sbjct: 64 ESSSDPFLSENSVIVASAVDDSISPEGIQEILSFIDYIKSREQKKKTID 112 >gi|300023570|ref|YP_003756181.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299525391|gb|ADJ23860.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 472 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R++ R G++Q L L ++ + + EK + L I+ V + Sbjct: 4 AFMGVRLKRLREERGLTQVALARALELSPSYLNQIEKNQRPLTVPILLKINSVFGVDVQL 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKIIEL-VRSI 126 F + ++ D ++ P GL + +I + V + I+ L RS Sbjct: 64 FSEDEEARL------IADLKDVLADP-GLGEHVALTEIREIAANMPAVGRAIVALQARSR 116 Query: 127 VSSEK 131 +SE+ Sbjct: 117 QASER 121 >gi|296109709|ref|YP_003616658.1| transcriptional regulator, XRE family [Methanocaldococcus infernus ME] gi|295434523|gb|ADG13694.1| transcriptional regulator, XRE family [Methanocaldococcus infernus ME] Length = 307 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP----IS 71 G+ ++ R +S +L E +G++ + + KYE I E L++P I Sbjct: 125 GETLKRVREEKKISVGELAEAVGVSRKTIYKYENYSANPSVDIAIKIEEYLDAPLVRGID 184 Query: 72 FF--FDVSPTVCSDISSEENNVMDFI 95 F D V +I + +++F+ Sbjct: 185 LFEPIDEDIEVNKEIDGLKKEIINFL 210 >gi|229593332|ref|YP_002875451.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|312963834|ref|ZP_07778305.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|229365198|emb|CAY53478.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|311281869|gb|EFQ60479.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 182 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ + + I + N ++D ++L Sbjct: 58 MVEFFSEEILQEIPTQIVYKANELIDISDGAVTMKLV 94 >gi|229160085|ref|ZP_04288087.1| Transcriptional regulator, Xre [Bacillus cereus R309803] gi|228623396|gb|EEK80220.1| Transcriptional regulator, Xre [Bacillus cereus R309803] Length = 293 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R+ +SQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGITIKELRIKKNISQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSEKLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|225390253|ref|ZP_03759977.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] gi|225043678|gb|EEG53924.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] Length = 195 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V K I+ R +S ++L + G++ + + E+G S L IS ++ Sbjct: 14 DQMNQIVAKNIKRLREERKLSMDELSKLSGVSKSMLAQIERGGGNPTISTLWKISNGMKV 73 Query: 69 P 69 P Sbjct: 74 P 74 >gi|153931878|ref|YP_001384723.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935604|ref|YP_001388244.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|170757150|ref|YP_001782087.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|152927922|gb|ABS33422.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931518|gb|ABS37017.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169122362|gb|ACA46198.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 82 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R ++Q+++ + L IT V YE G+ S L I++ + + Sbjct: 6 RLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDYL 61 >gi|153803053|ref|ZP_01957639.1| conserved domain protein [Vibrio cholerae MZO-3] gi|124121411|gb|EAY40154.1| conserved domain protein [Vibrio cholerae MZO-3] Length = 69 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VGKRI R G++Q+KL I V + E+G + +L I+E L Sbjct: 9 VGKRIAKMRKSKGLTQDKLALFAEIDRSYVGRIERGEVNLTVEKLYEIAETLGCD 63 >gi|118445241|ref|YP_891175.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118419802|gb|ABK88220.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 115 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKILASFFNTS 59 >gi|29347394|ref|NP_810897.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298385147|ref|ZP_06994706.1| hypothetical protein HMPREF9007_01800 [Bacteroides sp. 1_1_14] gi|29339294|gb|AAO77091.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298262291|gb|EFI05156.1| hypothetical protein HMPREF9007_01800 [Bacteroides sp. 1_1_14] Length = 73 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R + +SQE+L +G+T + + E G I+ P+ F + Sbjct: 8 NKIKVYRAMKNISQEELAVAIGVTRKTINTVETGKFIPSTVLALRIARYFGVPVEEIFVL 67 Query: 77 SPTVC 81 + Sbjct: 68 NDEAS 72 >gi|15897213|ref|NP_341818.1| multiprotein Bridging factor (MBP-like), putative (MBP-like) [Sulfolobus solfataricus P2] gi|284174459|ref|ZP_06388428.1| multiprotein Bridging factor (MBP-like), putative (MBP-like) [Sulfolobus solfataricus 98/2] gi|13813408|gb|AAK40608.1| Multiprotein Bridging Factor (MBP-like), putative (MBP-like) [Sulfolobus solfataricus P2] gi|261601881|gb|ACX91484.1| transcriptional regulator, XRE family [Sulfolobus solfataricus 98/2] Length = 165 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 39/82 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R LG+SQ++L + L ++ V+++E G + S+ + + ++L + + + Sbjct: 82 IKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNE 141 Query: 79 TVCSDISSEENNVMDFISTPDG 100 + + D ++ +G Sbjct: 142 ESEKEFDDTGLTLGDVVNIKEG 163 >gi|84499939|ref|ZP_00998205.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391873|gb|EAQ04141.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 211 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 8/134 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R G++ +++ + G+ + K E L ++ L+ +S + Sbjct: 18 GQKVRTLRRGKGLTLQQVADRAGMAGSTISKIENSNLSPTFDGLLKLARGLDVDLSTLLE 77 Query: 76 VSPTVCSDISSEENNVMDFI--STPDGLQLNRYFIQIDDVKVRQKIIE----LVRS--IV 127 + + +D ++ Y + + ++QK+I+ +V++ + Sbjct: 78 GEGGATATSPAPSIGRLDVTRAASRGAHDAATYIYEPLAMGLKQKLIDATYVVVKARDVA 137 Query: 128 SSEKKYRTIEEECM 141 ++ EE + Sbjct: 138 EFDQLVSHPGEELI 151 >gi|332638795|ref|ZP_08417658.1| transcription regulator [Weissella cibaria KACC 11862] Length = 113 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +RI+ GMS +++ + G++ + +Y+ A LQ +++VL + + Sbjct: 1 MTVYERIKEISKTRGMSLQQVAKSAGLSQNMIYQYKN--VNPKAETLQTLADVLGVSVDY 58 Query: 73 FFDVSPTVCSDISSEENN 90 S + ++E + Sbjct: 59 LLGNSDNMHPVDKTDERD 76 >gi|332291093|ref|YP_004429702.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169179|gb|AEE18434.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 251 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 5/98 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK IR R + +SQ+ E + + YE+G + + I+ PI Sbjct: 3 FFGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTIIKIANYFSIPIDDL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 TV S + + N ++T + + F I Sbjct: 63 LTKELTVNSLLKFKAN-----LTTDHDIITKQAFASIP 95 >gi|329896588|ref|ZP_08271619.1| repressor protein, putative (yorfE) [gamma proteobacterium IMCC3088] gi|328921695|gb|EGG29069.1| repressor protein, putative (yorfE) [gamma proteobacterium IMCC3088] Length = 68 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 13 INVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + +++L R++ G ++Q L E +G++ Q + EKG + ++ + Sbjct: 1 MAITNKVKLHRVMCGDITQAYLAEAIGVSRQTIIAIEKGTYKPSLEVALKMAAHFGVKVE 60 Query: 72 FFFDVS 77 F + Sbjct: 61 DVFQLD 66 >gi|259907780|ref|YP_002648136.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|259909771|ref|YP_002650127.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|259909778|ref|YP_002650134.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224963402|emb|CAX54890.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965393|emb|CAX56925.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965400|emb|CAX56932.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|283477642|emb|CAY73558.1| HTH-type transcriptional regulator immR [Erwinia pyrifoliae DSM 12163] Length = 132 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 8/112 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FF 74 GKR+ R ++Q +L L I + + ++E+G + + +++ LE + Sbjct: 17 GKRLAALRKERQLTQIELANLLDIQPRMLGRWEQGQVKPQFDYIIKLAQFLEVSTDYMLL 76 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL-----QLNRYF--IQIDDVKVRQKI 119 T + + + DGL + +F + I KVRQ I Sbjct: 77 GEEDTAAPVFDIKNKRLKELCKQVDGLKTEDQDMICHFLDMAITQEKVRQAI 128 >gi|222102333|ref|YP_002546474.1| helix turn helix transcriptional regulator [Agrobacterium vitis S4] gi|221739577|gb|ACM40279.1| helix turn helix transcriptional regulator [Agrobacterium vitis S4] Length = 160 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDVS 77 +R R +++E+ +G++ +YE+ +R+ +R+ H+ E+L PI F + Sbjct: 51 LRRAREDEKLTREEFASMVGLSTAVYGRYERAFSRMTVTRMIHLCELLGFQPIDMLFAAA 110 Query: 78 PTVCSDISSEENNVMDF 94 P + E + ++ Sbjct: 111 PHLYGRTPEEAKDHLEL 127 >gi|213691431|ref|YP_002322017.1| helix-turn-helix domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522892|gb|ACJ51639.1| helix-turn-helix domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457502|dbj|BAJ68123.1| hypothetical protein BLIJ_0529 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 401 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI L R + G++Q++L G++ ++ K + G+ S +S L+ PIS+F + Sbjct: 20 ERIALARRLEGVTQKELSTRSGLSQAKLSKLQNGIISFNESDAVKLSGALDYPISYFEES 79 Query: 77 S 77 Sbjct: 80 G 80 >gi|152969575|ref|YP_001334684.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580692|ref|YP_002239362.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342] gi|238894056|ref|YP_002918790.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae NTUH-K2044] gi|262043620|ref|ZP_06016729.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936213|ref|YP_003440272.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290510732|ref|ZP_06550102.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp. 1_1_55] gi|330010156|ref|ZP_08306698.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3] gi|150954424|gb|ABR76454.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569750|gb|ACI11526.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342] gi|238546372|dbj|BAH62723.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038958|gb|EEW40120.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288890922|gb|ADC59240.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289777448|gb|EFD85446.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp. 1_1_55] gi|328534622|gb|EGF61198.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3] Length = 185 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R LG+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMD 93 + + ++++++ Sbjct: 69 EPEKPDEPQVVINQDDLIE 87 >gi|119946193|ref|YP_943873.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii 37] gi|119864797|gb|ABM04274.1| predicted DNA-binding transcriptional regulator, helix-turn-helix domain [Psychromonas ingrahamii 37] Length = 87 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Query: 26 LGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +SQ+ LG +GI ++ YE G + L+ +++ L+ P+++FF Sbjct: 1 MKISQKDLGIKIGIDPSSASGRMNHYETGRHMPDLDTLKKLAKELDVPVNYFF 53 >gi|57234657|ref|YP_181292.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57225105|gb|AAW40162.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 67 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q +L E +G++ Q + EKG +++ L + I F Sbjct: 6 RIKELRARYNLTQAELAETVGVSRQTMLYLEKGTYNPSLILAHKVAKALHADIDDVF 62 >gi|2897106|gb|AAC03457.1| repressor [Streptococcus phage TP-J34] Length = 121 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G RI R G+SQ +L + LG + + K+E G + +++ +++ L + + Sbjct: 8 GSRIESLRASKGISQLELAKMLGYKSDSTISKWESGASIPTGTKIVKLAQALGTTTDYIL 67 Query: 75 DVSPTVCSD----ISSEENNVMD 93 + +D IS++ + +++ Sbjct: 68 FGDNSENNDGQQIISTDIDEIIE 90 >gi|72163432|ref|YP_291089.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71917164|gb|AAZ57066.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 225 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +G+R+ RR LG+SQE++ E G+ + E+ + L +++ L++ Sbjct: 12 LGRRVAYRRAELGLSQEEVAERAGMAAGYIDYLERNPPNLSPGALSRLADALQTTPEALL 71 Query: 74 -FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + ++ + I + + ++L + Sbjct: 72 GMGFDEPEGAHVTRVPKPKLQEIDSQECMELIKA 105 >gi|20091114|ref|NP_617189.1| transcriptional regulator [Methanosarcina acetivorans C2A] gi|19916214|gb|AAM05669.1| transcriptional regulator, Hth-3 family [Methanosarcina acetivorans C2A] Length = 79 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 RI+ R ++QE L + +G+ + V EKG I+ L++ + F F+ Sbjct: 15 RIKEFRARHDLTQEALAKIVGVRRETVVFLEKGKYNPSLKLAYRIARALDTTLDELFIFE 74 Query: 76 VSP 78 S Sbjct: 75 DSD 77 >gi|254180890|ref|ZP_04887488.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|184211429|gb|EDU08472.1| DNA-binding protein [Burkholderia pseudomallei 1655] Length = 195 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQRIARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS 77 ++ F+ Sbjct: 62 LASLFEDD 69 >gi|318059210|ref|ZP_07977933.1| hypothetical protein SSA3_14776 [Streptomyces sp. SA3_actG] Length = 174 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG RIR R +S L G+ + E G L ++ L P++ Sbjct: 8 VGARIRELREARALSLSALARRSGLGKATLSGLEAGTRNPTLETLYAVTTALGVPLT 64 >gi|311030669|ref|ZP_07708759.1| YazB [Bacillus sp. m3-13] Length = 71 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R++ R G SQ LG +G+T Q + EKG + +++ L+ + F Sbjct: 2 LCNRVKELRARHGFSQSDLGSLVGVTRQTIGFIEKGEFSPSIALSLRLAKHLKVKVDELF 61 >gi|290509616|ref|ZP_06548987.1| DNA-binding protein [Klebsiella sp. 1_1_55] gi|289779010|gb|EFD87007.1| DNA-binding protein [Klebsiella sp. 1_1_55] Length = 160 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 18/100 (18%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ SQE+L E G++ + +Q+ E G R G L ++ V E ++ ++ Sbjct: 5 NQVKQLRLQRAWSQEQLAEMAGLSVRTIQRIENGE-RPGLETLSALAAVFEVTVA---EI 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + +D +I++ K R Sbjct: 61 GGEASREDAPGPEASLDL--------------RIEEAKAR 86 >gi|229549206|ref|ZP_04437931.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|307270616|ref|ZP_07551907.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307276916|ref|ZP_07558026.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307287508|ref|ZP_07567551.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|229305443|gb|EEN71439.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|306501246|gb|EFM70549.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306506339|gb|EFM75499.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306512926|gb|EFM81567.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|315025553|gb|EFT37485.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315032799|gb|EFT44731.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035182|gb|EFT47114.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315143802|gb|EFT87818.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315159317|gb|EFU03334.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315162169|gb|EFU06186.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315164906|gb|EFU08923.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315168790|gb|EFU12807.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|329577382|gb|EGG58837.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 231 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR LG++Q ++ E L +T Q + +E + L +S + E + T+ Sbjct: 1 MRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLKEDNTM 60 Query: 81 CSDISSEENN 90 +S + Sbjct: 61 VEKLSKDIRE 70 >gi|229079535|ref|ZP_04212073.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228703760|gb|EEL56208.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] Length = 292 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|255533007|ref|YP_003093379.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345991|gb|ACU05317.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 105 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 GK+I++ R +Q+ + L I+ K E + + +RL +++VL Sbjct: 6 GKKIKMLRRQKKWAQKDMAGMLDISVPAYSKIECEITDINITRLIQVADVLGV 58 >gi|254518453|ref|ZP_05130509.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226912202|gb|EEH97403.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 115 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R+R R+ M+QE + G+ ++ +YE + + ++E + + Sbjct: 5 GERLRSLRLEKDMTQEDVASYFGLHKTRISQYELNKRQADDDMKKKLAEFFGVSLDYLM 63 >gi|268593019|ref|ZP_06127240.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311282|gb|EFE51735.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 100 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++++L R + +G + QQ+ + E+GVN++ + ++L+ + FF Sbjct: 11 ISRQLKLLRKQANYKLSEFARLMGKSEQQIFRMERGVNKMDIDTMMMYFKILKIDVPHFF 70 Query: 75 D 75 + Sbjct: 71 N 71 >gi|153811873|ref|ZP_01964541.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174] gi|149832007|gb|EDM87092.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174] Length = 349 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + N+ K I R +SQE+ E +G+T Q V ++E G++ + L +SE + Sbjct: 8 NQNIAKTILKIRQDNKLSQEQFAEIVGVTRQAVSRWEMGISAPNINTLILMSEKFNIQVD 67 >gi|170728642|ref|YP_001762668.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813989|gb|ACA88573.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 181 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP++ + I+ R ++Q +L E GI + E + S + +++ L Sbjct: 1 MANPIN----EGIKRLRAQHKLTQIELAEMAGIPRATLANMESSNSNPSISVVMKVAQAL 56 Query: 67 ESPISFF 73 + Sbjct: 57 GVTVDDL 63 >gi|90962168|ref|YP_536084.1| Phage immunity repressor [Lactobacillus phage Sal4] gi|90821362|gb|ABE00001.1| Phage immunity repressor [Lactobacillus phage Sal4] Length = 126 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK+ ++ R+R R+ ++ +K+ + +GI+ + KYE+ Sbjct: 1 MTTFKKLKYDSNLKPNNRLRQLRLSKDLTLKKVADDIGISENLIGKYEREEREPKLKTWI 60 Query: 61 HISEVLESPISFF 73 +++ +S+ Sbjct: 61 KLADYFNVSVSYL 73 >gi|56416260|ref|YP_153335.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365183|ref|YP_002144820.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|11992069|gb|AAG42426.1|AF306456_3 regulatory protein SptAIC [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|22135357|gb|AAM93162.1|AF508974_2 regulatory protein SbaIC [Salmonella enterica] gi|56130517|gb|AAV80023.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096660|emb|CAR62275.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 78 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+ + IR R G+SQE L + G+ + E+ + + Sbjct: 1 MERKINPSRARVIFAHNIRKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDR 60 Query: 62 ISEVLESPISFFFD 75 I+ L S + Sbjct: 61 IASALGVSPSSLLE 74 >gi|16079517|ref|NP_390341.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|221310384|ref|ZP_03592231.1| SinR [Bacillus subtilis subsp. subtilis str. 168] gi|221314708|ref|ZP_03596513.1| SinR [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319631|ref|ZP_03600925.1| SinR [Bacillus subtilis subsp. subtilis str. JH642] gi|221323907|ref|ZP_03605201.1| SinR [Bacillus subtilis subsp. subtilis str. SMY] gi|296333382|ref|ZP_06875835.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675112|ref|YP_003866784.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|321311945|ref|YP_004204232.1| transcriptional regulator SinR [Bacillus subtilis BSn5] gi|134504|sp|P06533|SINR_BACSU RecName: Full=HTH-type transcriptional regulator sinR gi|4389349|pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX gi|143547|gb|AAA22757.1| Sin regulatory protein (ttg start codon) [Bacillus subtilis] gi|1303886|dbj|BAA12542.1| SinR [Bacillus subtilis] gi|2634895|emb|CAB14392.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|296149580|gb|EFG90476.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413356|gb|ADM38475.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|320018219|gb|ADV93205.1| transcriptional regulator SinR [Bacillus subtilis BSn5] Length = 111 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 62 LDEKHETEYDGQLDSE 77 >gi|23578000|ref|NP_702947.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259506151|ref|ZP_05749053.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|23494826|dbj|BAC19789.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259166272|gb|EEW50826.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 81 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + I +G R+R R +SQE++ G+ + E+G + L Sbjct: 1 MTPDKK----ILIQLGDRLREARKQAKLSQEEVAHLSGLHRTYISLVERGGRNISVLNLL 56 Query: 61 HISEVLESPIS 71 I+ VL + Sbjct: 57 SITGVLGVDVG 67 >gi|75760140|ref|ZP_00740200.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903528|ref|ZP_04067651.1| hypothetical protein bthur0014_46880 [Bacillus thuringiensis IBL 4222] gi|228910865|ref|ZP_04074674.1| hypothetical protein bthur0013_50070 [Bacillus thuringiensis IBL 200] gi|228968140|ref|ZP_04129144.1| hypothetical protein bthur0004_49240 [Bacillus thuringiensis serovar sotto str. T04001] gi|74492377|gb|EAO55533.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228791575|gb|EEM39173.1| hypothetical protein bthur0004_49240 [Bacillus thuringiensis serovar sotto str. T04001] gi|228848816|gb|EEM93661.1| hypothetical protein bthur0013_50070 [Bacillus thuringiensis IBL 200] gi|228856104|gb|EEN00641.1| hypothetical protein bthur0014_46880 [Bacillus thuringiensis IBL 4222] Length = 79 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ + Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVSVE 65 Query: 72 FFFDVSPTVCSD 83 F + D Sbjct: 66 EIFTLVEGEEDD 77 >gi|325958946|ref|YP_004290412.1| XRE family transcriptional regulator [Methanobacterium sp. AL-21] gi|325330378|gb|ADZ09440.1| transcriptional regulator, XRE family [Methanobacterium sp. AL-21] Length = 64 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFFD 75 ++++ R + ++QE L + + +T Q + EK + I++ I FFD Sbjct: 3 NKLKVYRAMNDLTQEDLAKEIKVTRQTIISIEKQKYDPSLTLAFKIAKFFNVHIEDIFFD 62 Query: 76 VS 77 Sbjct: 63 EE 64 >gi|322377590|ref|ZP_08052080.1| DNA-binding protein [Streptococcus sp. M334] gi|321281355|gb|EFX58365.1| DNA-binding protein [Streptococcus sp. M334] Length = 303 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P Sbjct: 1 MLIGQKIKEIRIEKGISRSDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPAY 60 Query: 72 FFFDVSPTVCS 82 + S Sbjct: 61 SLMPDFSALPS 71 >gi|296138624|ref|YP_003645867.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026758|gb|ADG77528.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 278 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G IR R M+Q L +G++ + + E G +R + I E L+ P+ Sbjct: 4 GDEIRQWRQRRRMTQLDLAVAVGVSTRHLSFVETGRSRPSRRLILEIGEGLDIPL 58 >gi|258593399|emb|CBE69738.1| Transcriptional regulator, Cro/CI family [NC10 bacterium 'Dutch sediment'] Length = 81 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 21/55 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R +R G++Q L LG V KYE G + + L + F Sbjct: 17 LRQKRKDRGLTQADLAATLGKPQSFVSKYEAGERLLSFVETIDVCRALGIDPATF 71 >gi|270289873|ref|ZP_06196099.1| XRE family transcriptional regulator [Pediococcus acidilactici 7_4] gi|270281410|gb|EFA27242.1| XRE family transcriptional regulator [Pediococcus acidilactici 7_4] Length = 188 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R ++Q ++ L +T Q + ++E+G L+ ++E+ I Sbjct: 1 MSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAELYGVSID- 59 Query: 73 FFDVSPTVCSDISSEENNVM 92 +++ T + EE + M Sbjct: 60 --ELTNTSLLNPVQEEGDPM 77 >gi|266619966|ref|ZP_06112901.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288868430|gb|EFD00729.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 113 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 26/61 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI RR L M+QE L E IT Q V E G + + IS L + Sbjct: 6 KEMGKRIHDRRKQLHMTQENLAELANITPQTVSTAELGQKAMRPDTIIKISAALGISTDY 65 Query: 73 F 73 Sbjct: 66 L 66 >gi|257886939|ref|ZP_05666592.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257822993|gb|EEV49925.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 370 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 6 LSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVD 62 >gi|239999287|ref|ZP_04719211.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae 35/02] Length = 236 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQE L + ++ + E G N+ A+ + ++++L+ +F+ + Sbjct: 7 RLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNK-KATNIAKLAKILDVS-AFWLETG 64 Query: 78 PTVCS 82 + Sbjct: 65 EGSRN 69 >gi|308235773|ref|ZP_07666510.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114939|ref|YP_003986160.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019] gi|310946433|gb|ADP39137.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019] Length = 67 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ R G++QE+L + L ++ Q V E G I++ I F Sbjct: 3 NRLEQIRKEKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIF 60 >gi|254494052|ref|ZP_05107223.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|226513092|gb|EEH62437.1| transcriptional regulator [Neisseria gonorrhoeae 1291] Length = 243 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQE L + ++ + E G N+ A+ + ++++L+ +F+ + Sbjct: 14 RLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNK-KATNIAKLAKILDVS-AFWLETG 71 Query: 78 PTVCS 82 + Sbjct: 72 EGSRN 76 >gi|163746908|ref|ZP_02154265.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161380022|gb|EDQ04434.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 205 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G R+R R ++ L G+ + K E G ++ +++ L+ I Sbjct: 7 LGARLRHLRKSRKLTLSALASLSGVAVSTISKIENGALSPTLDKVLRLADGLDLSIG 63 >gi|153852685|ref|ZP_01994122.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814] gi|149754327|gb|EDM64258.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814] Length = 83 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 32/67 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R LG++Q ++G+ G++ Q + + E+G + ++++ E + F Sbjct: 13 NRLKEYRSRLGVNQTEMGKLAGVSRQTISQIERGDYSPSVTLALKLAKICEVNVEDIFIY 72 Query: 77 SPTVCSD 83 + + Sbjct: 73 EEEINDE 79 >gi|149183828|ref|ZP_01862225.1| DNA-binding protein [Bacillus sp. SG-1] gi|148848458|gb|EDL62711.1| DNA-binding protein [Bacillus sp. SG-1] Length = 123 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G+ ++L R +SQE+L + ++KYE G + +S VL+ P S Sbjct: 3 HFGQNLKLLREERNISQEELAMRARLGRTTIEKYESGSQIPDTPTILKLSTVLDVPAS 60 >gi|126452186|ref|YP_001064380.1| XRE family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|242317669|ref|ZP_04816685.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 1106b] gi|126225828|gb|ABN89368.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 1106a] gi|242140908|gb|EES27310.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 1106b] Length = 107 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G++IR R G++ ++L + + + + E K R A R+ I+ L ++ Sbjct: 4 LGEKIRTLRKRQGLTLDQLALQVSASKSSIWELENKEKARPSADRIDAIARALGVTSAYL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 D + T S ++E F + L Sbjct: 64 LDDTQTEPSRKVADEA----FFRKYEQLD 88 >gi|331017157|gb|EGH97213.1| XRE family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 115 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 20/122 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R++ R LG+SQ + G L ++ + YE G N + + +++ + Sbjct: 7 VGERLKEERERLGLSQTEFGTRLRVSRGTQKNYELGANSLDLRYVAALTDQ-GVDAGYVL 65 Query: 75 DV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIVSSE 130 SP ++ +E L ++ ++ D K ++I V+S+ + Sbjct: 66 TGHRSPAPGQGLNPDEA------------DLVDHYRRLPVDDQKTVRRI---VKSMAAEA 110 Query: 131 KK 132 + Sbjct: 111 DE 112 >gi|328956479|ref|YP_004373865.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4] gi|328672803|gb|AEB28849.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4] Length = 66 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G++++ R+ G SQ + E L I+ Q + K+E ++ L +S + Sbjct: 1 MLLGEKLKSSRVKKGFSQNDVAEELHISRQSISKWENDISYPDLDNLVKLSTYYQVS 57 >gi|320528225|ref|ZP_08029389.1| toxin-antitoxin system, antitoxin component, Xre family [Solobacterium moorei F0204] gi|320131398|gb|EFW23964.1| toxin-antitoxin system, antitoxin component, Xre family [Solobacterium moorei F0204] Length = 86 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 26/70 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I V RI+ R +SQ +L + +G T Q + E G I++ I Sbjct: 16 IKVKNRIKELRKEHKLSQGELADLVGTTRQTITSIEVGKYTASLPLAYKIAKQFSLSIEE 75 Query: 73 FFDVSPTVCS 82 FD S Sbjct: 76 VFDFSELEEE 85 >gi|253316015|ref|ZP_04839228.1| hypothetical protein SauraC_07702 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257426314|ref|ZP_05602723.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428649|ref|ZP_05605046.1| helix-turn-helix containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431575|ref|ZP_05607946.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433971|ref|ZP_05610323.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257436875|ref|ZP_05612918.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|282915390|ref|ZP_06323166.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282926055|ref|ZP_06333701.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|293509091|ref|ZP_06667875.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293511865|ref|ZP_06670558.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293550575|ref|ZP_06673246.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|257270886|gb|EEV03072.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274520|gb|EEV06026.1| helix-turn-helix containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277677|gb|EEV08354.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281109|gb|EEV11252.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257283786|gb|EEV13910.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|270300313|gb|ACZ69119.1| hypothetical protein SAP065B_019 [Staphylococcus aureus] gi|281334218|gb|ADA61302.1| hypothetical protein SAP013A_027 [Staphylococcus aureus] gi|281334580|gb|ADA61664.1| hypothetical protein SAP026A_011 [Staphylococcus aureus] gi|282165943|gb|ADA79963.1| hypothetical protein SAP095A_012 [Staphylococcus aureus] gi|282165989|gb|ADA80009.1| hypothetical protein SAP096A_026 [Staphylococcus aureus] gi|282166399|gb|ADA80415.1| hypothetical protein SAP085C_016 [Staphylococcus aureus] gi|282166455|gb|ADA80471.1| hypothetical protein SAP088A_032 [Staphylococcus aureus] gi|282166595|gb|ADA80611.1| hypothetical protein SAP093C_026 [Staphylococcus aureus] gi|282166914|gb|ADA80930.1| hypothetical protein SAP084B_016 [Staphylococcus aureus] gi|282166965|gb|ADA80981.1| hypothetical protein SAP086A_019 [Staphylococcus aureus] gi|282167021|gb|ADA81037.1| Transcriptional regulator, XRE family [Staphylococcus aureus] gi|282312457|gb|EFB42862.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282320717|gb|EFB51052.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|290918638|gb|EFD95715.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|291094657|gb|EFE24932.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291465307|gb|EFF07840.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] Length = 64 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 I+ +R + G SQE+L L ++ Q V K+E N L +S++ + Sbjct: 7 IKEQRELKGWSQEELTNILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHL 61 >gi|300771514|ref|ZP_07081389.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761503|gb|EFK58324.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 66 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I++ R+I G SQE+L + ++ Q + E G IS+ L+ + F++ Sbjct: 3 NNIKINRVIKGYSQEQLAILVNVSRQTINALEAGKYVPSTVLSLKISQALDKSVEELFEL 62 Query: 77 SPT 79 Sbjct: 63 DEG 65 >gi|228969513|ref|ZP_04130324.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228790215|gb|EEM37986.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+R++ R + G +Q++LG +G+ + E G + +EV + Sbjct: 5 GERVKTLRKMKGWTQDELGAAVGLKKAAISGIENNKRDRGEKSVSKFAEVFGCTADYLLG 64 Query: 74 FDVSPTVCSD 83 F P + S+ Sbjct: 65 FSDDPALNSE 74 >gi|227512586|ref|ZP_03942635.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227084201|gb|EEI19513.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 198 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V K +R R+ G S KL E G++ + + E + + I L P + Sbjct: 17 VSKNLRKIRLERGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVPYTTLL 76 Query: 75 DV 76 + Sbjct: 77 EG 78 >gi|196047670|ref|ZP_03114875.1| transcriptional regulator [Bacillus cereus 03BB108] gi|196021495|gb|EDX60197.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 115 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTS 59 >gi|218234393|ref|YP_002366467.1| DNA-binding protein [Bacillus cereus B4264] gi|218162350|gb|ACK62342.1| DNA-binding protein [Bacillus cereus B4264] Length = 404 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTALAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDEGEIVEL 72 >gi|150006253|ref|YP_001300997.1| hypothetical protein BVU_3764 [Bacteroides vulgatus ATCC 8482] gi|149934677|gb|ABR41375.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 142 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N+G IR R+ G++QE+LG+ +G+ Q+ K E G + + + + L S Sbjct: 7 NIGLMIRNERLRKGLTQEELGKRIGVGKAQISKIESGK-GLTIKTMTKVLDALGMSAS 63 >gi|86751755|ref|YP_488251.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574783|gb|ABD09340.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris HaA2] Length = 305 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+R+R R + GMS++ L + GI+ + + + E G V L+ +S+ L +P+ Sbjct: 13 LELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRVSDALATPL 70 >gi|319938413|ref|ZP_08012808.1| hypothetical protein HMPREF9488_03644 [Coprobacillus sp. 29_1] gi|319806501|gb|EFW03165.1| hypothetical protein HMPREF9488_03644 [Coprobacillus sp. 29_1] Length = 191 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M Q++L + +GI Q + K E+GVN L+ I EVL+ + ++ ++ Sbjct: 1 MKQQELADRIGINMQSLSKIERGVNYPTFDTLEKIMEVLDVTPN---ELLSGEWKYVNQA 57 Query: 88 ENNVMDFISTPDGL 101 E V F+ + L Sbjct: 58 EKEVCQFLKVEERL 71 >gi|298717173|ref|YP_003729815.1| HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] gi|298361362|gb|ADI78143.1| Putative HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] Length = 192 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + ++ +G +++ R G S L E G++ + K E+G + A+ L +S Sbjct: 7 SKEDDLNARIGLKVKAERERRGWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLSGA 66 Query: 66 LESPIS 71 + +S Sbjct: 67 FDMSMS 72 >gi|239991923|ref|ZP_04712587.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 273 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D VG +R R +SQ +L + + + E G +R + ++E L+ P+ Sbjct: 3 DTGVGPLLRDWREQRRISQLELALRADSSARHISFIETGRSRPSEDMVLRLAEHLDVPV 61 >gi|237715765|ref|ZP_04546246.1| transcriptional regulator [Bacteroides sp. D1] gi|262408773|ref|ZP_06085319.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645534|ref|ZP_06723230.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294806594|ref|ZP_06765430.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|229444474|gb|EEO50265.1| transcriptional regulator [Bacteroides sp. D1] gi|262353638|gb|EEZ02732.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639108|gb|EFF57430.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294446209|gb|EFG14840.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] Length = 104 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 +G+ IR R ++QE+LG +G+ Q+ + E G N Sbjct: 37 IGEAIRKARQSKNLTQEELGNLIGVQRAQISRIENGKN 74 >gi|187935228|ref|YP_001886792.1| hypothetical protein CLL_A2604 [Clostridium botulinum B str. Eklund 17B] gi|187723381|gb|ACD24602.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 64 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R L +SQ +L E +G+T Q + E G I + L ++ F Sbjct: 5 KLKSARAALDLSQGQLAEIVGVTRQTIGMIEAGKYNPSLQLCIAICKALGKTLNDIF 61 >gi|60682884|ref|YP_213028.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|253566007|ref|ZP_04843461.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|60494318|emb|CAH09113.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|251945111|gb|EES85549.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 151 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+++ G IR R+ + Q+ L + +T V KYEK + + L + L P+ Sbjct: 10 VNVHHGHNIRRTRIEKNIKQDALAALVNMTQPNVSKYEK-MRVIEDEMLNRFARALNVPV 68 Query: 71 SFF 73 + Sbjct: 69 EYL 71 >gi|23455773|ref|NP_695143.1| repressor [Lactobacillus phage phig1e] gi|7450563|pir||T13178 repressor protein - Lactobacillus phage phi-gle gi|1926322|emb|CAA66782.1| repressor [Lactobacillus phage phig1e] gi|1926374|emb|CAA62089.1| gp132 [Lactobacillus phage phig1e] Length = 132 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R + G +Q+++ + +GI+ + E N L+ ++ E + Sbjct: 6 IGNRLKELRNMQGKTQDEVAKSIGISRARYSHLENERNEPDNELLKLLASYYEVSTDYL 64 >gi|53720319|ref|YP_109305.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167817109|ref|ZP_02448789.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|237813540|ref|YP_002897991.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|254299001|ref|ZP_04966451.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52210733|emb|CAH36717.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|157809113|gb|EDO86283.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|237503057|gb|ACQ95375.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 195 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQRIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS 77 ++ F+ Sbjct: 62 LASLFEDD 69 >gi|327440177|dbj|BAK16542.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 415 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 26/108 (24%) Query: 15 VGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R ++Q ++ GE L T + E G + L+ I+ L + Sbjct: 4 LGERIKKLRKQKKLTQTEVVGERL--TKGMLSLIENGKAQPSMESLRFIANQLNVDV--- 58 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY-FIQIDDVKVRQKII 120 DF+ L + R + I++ R+K+I Sbjct: 59 -------------------DFLIDDGTLTMLRNLYTTIEEDVERRKLI 87 >gi|325130150|gb|EGC52929.1| DNA-binding protein [Neisseria meningitidis OX99.30304] gi|325202207|gb|ADY97661.1| DNA-binding protein [Neisseria meningitidis M01-240149] gi|325208038|gb|ADZ03490.1| DNA-binding protein [Neisseria meningitidis NZ-05/33] Length = 123 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 12/124 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ R L M+Q ++ E G++ + YE+G+++ A +V + + Sbjct: 6 FFGNRLKEERKKLKMTQAEIAEKCGVSGRMWGDYERGISQPKAELFFQFEKV-GIDVQYV 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + SE N + + L L R D R+ I+ + R +EKK Sbjct: 65 MHGRRGETAVMPSETLNAEE----QELLALFREAAAAD----REMILMVAR---RAEKKA 113 Query: 134 RTIE 137 +T Sbjct: 114 QTAL 117 >gi|295100170|emb|CBK89259.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 117 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R +SQE LG+ +G+T Q + +E +L+ +S+ Sbjct: 2 LGENILRLRKGANLSQEALGDIIGVTRQMISNWELEETAPNPEQLKLLSKAFNVSADDLL 61 Query: 75 DVS 77 + Sbjct: 62 NND 64 >gi|257887111|ref|ZP_05666764.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257823165|gb|EEV50097.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 124 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R G +Q + + + QK E G + + L I++ F + Sbjct: 5 ERIKQLREERGYTQRDVANAVKLNISVYQKIELGSRPIRENELAVIADFFNVSTDFLLNR 64 Query: 77 SPTVCSDISSEENNVMDFIST 97 + SEE+ + D I + Sbjct: 65 TSDPTPPKRSEEDQLGDSILS 85 >gi|229149987|ref|ZP_04278212.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|228633425|gb|EEK90029.1| Transcriptional regulator, Xre [Bacillus cereus m1550] Length = 404 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTALAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDEGEIVEL 72 >gi|227113678|ref|ZP_03827334.1| putative regulatory protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 97 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R R+ GM+QE L LG V K E G R+ HI+ +L S Sbjct: 29 LREARIEKGMTQENLANALGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDAS 81 >gi|167767673|ref|ZP_02439726.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1] gi|317499148|ref|ZP_07957425.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710690|gb|EDS21269.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1] gi|291560806|emb|CBL39606.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|316893561|gb|EFV15766.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 120 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +I+ R ++QE+L E I+ + E V L+ I++ L I Sbjct: 9 LGAKIKEYRKKENITQEQLAEMADISLSHMSNVETASVSVSLPALKLIADALGVTID 65 >gi|14591505|ref|NP_143586.1| hypothetical protein PH1748 [Pyrococcus horikoshii OT3] gi|3258179|dbj|BAA30862.1| 192aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 192 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IP PVD + I+ R LG++QE+L G+T + K E G S I L Sbjct: 4 IPKPVDP---RDIKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60 >gi|99081574|ref|YP_613728.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037854|gb|ABF64466.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 133 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L +G+ + +E+ ++ A++L +S +L +S+ Sbjct: 17 GDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLSGILNVSMSWLLT 76 Query: 76 VSPTVCSDISSE 87 S + + Sbjct: 77 GEGDELSAPNED 88 >gi|325977912|ref|YP_004287628.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177840|emb|CBZ47884.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 199 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 29/79 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G + ++L GI + YE G + Q +++ + + + Sbjct: 14 NRVNELRKQFGKTMKELSAETGIGLSTISNYENGYSTPKKKNAQILADYFGVSVPYLLGL 73 Query: 77 SPTVCSDISSEENNVMDFI 95 SE++ V FI Sbjct: 74 DDNPVLKNPSEDSFVKSFI 92 >gi|313898654|ref|ZP_07832189.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956538|gb|EFR38171.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 118 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +++ VG IR GM+Q++L +G T + + Y G + L I + Sbjct: 2 KKVTEINLRVGDAIRKGLQRKGMTQKELAALVGSTQRSISSYINGNAQPPLDILSLICRI 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE ++ + + N + P L+ + F Q+ + + R +L++S Sbjct: 62 LEINMNQILQIP---------DFNFPGRMLHDPMELEFMKIFDQVPEER-RMTFTKLMKS 111 Query: 126 I 126 I Sbjct: 112 I 112 >gi|312960098|ref|ZP_07774610.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|311285592|gb|EFQ64161.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 193 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R ++ +L + + + V + E+G++R + L IS L+ P ++F+ Sbjct: 22 IHDLRKHKKLTLAQLAQKIERSVGFVSQVERGLSRPTVADLTAISHALDVPTTYFYSQPK 81 Query: 79 TVCSDISSEENN 90 D + N Sbjct: 82 PKAVDWITRPNE 93 >gi|304384795|ref|ZP_07367141.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328989|gb|EFL96209.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 123 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRI R + ++Q +L L I + K E G +V + L +S++ + + Sbjct: 6 LSKRIVDLRESMDLTQTELARRLKIDKSAMNKIENGTRKVSSEELNKLSDIFDVTTDYLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 + T + ++ F+ DG Sbjct: 66 GKNGTPKWANKQDVFDLKKFLDDNDG 91 >gi|300854843|ref|YP_003779827.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300434958|gb|ADK14725.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] Length = 224 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R + MS ++L L IT Q V K+EK + RL +S++ P +F Sbjct: 8 RKLYNMSMDELAHNLNITKQTVSKWEKRKIPISDKRLNQLSKIFNIPQKYF 58 >gi|257898126|ref|ZP_05677779.1| transcriptional regulator [Enterococcus faecium Com15] gi|257836038|gb|EEV61112.1| transcriptional regulator [Enterococcus faecium Com15] Length = 370 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 6 LSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVD 62 >gi|271962500|ref|YP_003336696.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505675|gb|ACZ83953.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 175 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 12/124 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR +R +S +L G++ + + E+G+ + A L I++ L + Sbjct: 9 IGEYIREQRTHAKISLRQLAAAAGVSNPYLSQIERGLRKPSAEILNQIAKGLHISSQALY 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 EE D L R I + + RQ +I++ S + Sbjct: 69 ------VQAGLIEEREP-----DSDVLTAIRADHLISE-RQRQVLIDIYESFRKENRAGA 116 Query: 135 TIEE 138 E+ Sbjct: 117 PDED 120 >gi|228923759|ref|ZP_04087037.1| hypothetical protein bthur0011_47340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229076410|ref|ZP_04209375.1| hypothetical protein bcere0024_47140 [Bacillus cereus Rock4-18] gi|228706845|gb|EEL59053.1| hypothetical protein bcere0024_47140 [Bacillus cereus Rock4-18] gi|228835888|gb|EEM81251.1| hypothetical protein bthur0011_47340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 79 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ + Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVSVE 65 Query: 72 FFFDVSPTVCSD 83 F + D Sbjct: 66 EIFTLVEGEEDD 77 >gi|227325994|ref|ZP_03830018.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 201 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R L +S +L + G+ + + E GV L ++ L+ +S Sbjct: 31 IRRERERLNLSVTELAKRAGLAKSTLSQLESGVGNPSLETLWALAMALDVQVS 83 >gi|291286562|ref|YP_003503378.1| helix-turn-helix domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883722|gb|ADD67422.1| helix-turn-helix domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 351 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 R++ R G+SQ +LGE LG++ Q + +E G + I + Sbjct: 2 RLKELREERGVSQAELGEFLGVSRQTIAAWENGDREPSVLQFSRICK 48 >gi|225175042|ref|ZP_03729039.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225169682|gb|EEG78479.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 65 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R + ++QE+L + LG+T V EKG ++ + F Sbjct: 3 NKLKVYRAMHDLTQEELAKKLGVTRATVNSIEKGRYDPSIKLAFKMARFFAVNVEELF 60 >gi|152982459|ref|YP_001354080.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282536|gb|ABR90946.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 221 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ +G+R+ R G +Q++L G T + K E L I++ L + Sbjct: 15 DIELRLGRRVSELRTARGYTQDRLASETGFTKGYLSKIENSKIIPPIGTLIKIAQALHTD 74 Query: 70 ISFFFDVSPTVCSDI 84 ++ SD Sbjct: 75 LAELLGTETAERSDA 89 >gi|167645630|ref|YP_001683293.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348060|gb|ABZ70795.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 64 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L + L ++ Q + E G I+ + PI F Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFKIARLFGLPIETIFQD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|150376382|ref|YP_001312978.1| hypothetical protein Smed_4240 [Sinorhizobium medicae WSM419] gi|150030929|gb|ABR63045.1| protein of unknown function DUF955 [Sinorhizobium medicae WSM419] Length = 472 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+++R R ++Q + E +GI+ + + E V AS L ++E + I+ Sbjct: 6 LYIGRKVRDLRDGKRLTQAQFAERIGISTSYLNQIENNQRPVSASVLLALAEKFQIDIA 64 >gi|50119905|ref|YP_049072.1| putative regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49610431|emb|CAG73876.1| putative regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 84 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R R+ GM+QE L LG V K E G R+ HI+ +L S Sbjct: 16 LREARIEKGMTQENLANALGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDAS 68 >gi|114564581|ref|YP_752095.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] gi|114335874|gb|ABI73256.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] Length = 68 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I G ++R +R LG+SQ+KL I + E+G + + ++EVL + Sbjct: 6 IQFGAKLRDKRKTLGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLGCDV 63 >gi|170718165|ref|YP_001785192.1| helix-turn-helix domain-containing protein [Haemophilus somnus 2336] gi|168826294|gb|ACA31665.1| helix-turn-helix domain protein [Haemophilus somnus 2336] Length = 134 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +N+ ++IR R SQE++ E L ++ K E+G ++ +L+ I+++L+ + Sbjct: 1 MNINEKIRRIRESKEWSQEQMAEKLNMSLNGYAKIERGETKLYLDKLEQIAQILDIDV 58 >gi|308174255|ref|YP_003920960.1| post-exponential-phase response transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307607119|emb|CBI43490.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens DSM 7] gi|328912595|gb|AEB64191.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens LL3] Length = 113 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 64 LDEKHETEYDGQLDSE 79 >gi|295103897|emb|CBL01441.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 65 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R M+Q L E G++ Q + EKG + + I ++L+ + F Sbjct: 6 KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILDKTLDELF 62 >gi|228901070|ref|ZP_04065279.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|228858586|gb|EEN03037.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 220 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|237808823|ref|YP_002893263.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] gi|237501084|gb|ACQ93677.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] Length = 186 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ ++L R G S +K G++ + + E+G + + L I+ E+ S Sbjct: 6 RHIAATLQLLRKQRGWSLDKTAAATGVSKAMLGQIERGESSPTVATLWKIATGFETSFST 65 Query: 73 FFDVS 77 F + S Sbjct: 66 FLEPS 70 >gi|218670812|ref|ZP_03520483.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 96 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + PI Sbjct: 1 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF P +++ Sbjct: 59 GLAEFFAFEPERPKKAFYAAEELVEI 84 >gi|206971702|ref|ZP_03232652.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] gi|206733687|gb|EDZ50859.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] Length = 292 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|160933026|ref|ZP_02080415.1| hypothetical protein CLOLEP_01868 [Clostridium leptum DSM 753] gi|156868100|gb|EDO61472.1| hypothetical protein CLOLEP_01868 [Clostridium leptum DSM 753] Length = 118 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFFFD 75 +R++ RR LG S + L ++ +Q+YE G+ + S+L +S+ LE+ + Sbjct: 10 ERLKRRRKELGYSYQDLANLTQMSKSTLQRYETGGIKNIPLSKLDVLSQALETSREWLMG 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + SS F GL+ Sbjct: 70 WDE--KKEASSASRQSDGFFRLKKGLE 94 >gi|154505562|ref|ZP_02042300.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] gi|153794220|gb|EDN76640.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] Length = 107 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R +SQ++L LGI+ V YE+G L I+++ + + Sbjct: 8 LKTLRTDKHLSQQELATRLGISKSAVSMYEQGRREPDFDILNKIADIFQVDADYL 62 >gi|149189925|ref|ZP_01868204.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] gi|148836240|gb|EDL53198.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] Length = 179 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ R G+S + + G++ + + E+G + S L IS LE+ S F Sbjct: 9 QIAAHLKQIRKHKGLSLDATAKLTGVSKAMLGQIERGESSPTISTLWKISSGLEASFSGF 68 Query: 74 FDVSP 78 F P Sbjct: 69 FANDP 73 >gi|157960771|ref|YP_001500805.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845771|gb|ABV86270.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 182 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ ++ R G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGENLKRVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVD 60 Query: 73 FFDVSPTVCSD 83 FF + + + Sbjct: 61 FFSIEDSTLVE 71 >gi|118577270|ref|YP_899510.1| hypothetical protein Ppro_3665 [Pelobacter propionicus DSM 2379] gi|118504775|gb|ABL01257.1| protein of unknown function DUF955 [Pelobacter propionicus DSM 2379] Length = 372 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+ L R +++ L G+ + + YE G + + ++ L P FFF Sbjct: 9 QRLTLARQKRKLTKTVLANSAGVVSRSISAYESGDTIPTSETIMALASALRFPAEFFF 66 >gi|313672662|ref|YP_004050773.1| cupin 2 conserved barrel domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939418|gb|ADR18610.1| Cupin 2 conserved barrel domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 181 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I RM ++ +L + G + + + E+ + S L+ I++ LE + + Sbjct: 1 MSIGKKIVELRMKKNLTLRQLSKISGCSLGFLSQVERDLVSPTVSSLKKIADALEVNMMY 60 Query: 73 FFDVS 77 FFD Sbjct: 61 FFDSP 65 >gi|170757051|ref|YP_001780215.1| DNA binding protein [Clostridium botulinum B1 str. Okra] gi|169122263|gb|ACA46099.1| DNA binding protein [Clostridium botulinum B1 str. Okra] Length = 70 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R M+Q++L + + ++ + + EKG I+ V + I + Sbjct: 3 NRVKELRTASNMTQQQLADLVSVSSRTIISLEKGQYNPSIMLAYKIARVFNTTIEELY 60 >gi|86131733|ref|ZP_01050330.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] gi|85817555|gb|EAQ38729.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] Length = 251 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK IR R + +SQ+ E + + YE+G + + I+ PI Sbjct: 3 FFGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTVIKIANYFSIPIDDL 62 >gi|319646479|ref|ZP_08000708.1| transcriptional regulator [Bacillus sp. BT1B_CT2] gi|317391067|gb|EFV71865.1| transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 101 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R +QE++ + +G++ + YE G + L+ +++ + I + Sbjct: 2 LGGRLKSLRGKR--TQEEVAKQIGVSRARYSHYENGRSEPDYETLKKLADYYKVTIDYL 58 >gi|306821372|ref|ZP_07454980.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550590|gb|EFM38573.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 135 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 GK+++ R ++Q +L + LGIT + V YE R + ++ + I++ Sbjct: 4 GKKLKALREDKNLTQSELAKILGITLKTVSNYETKDMRPRKMEMYEKMANFFDVNINYL 62 >gi|302561872|ref|ZP_07314214.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302479490|gb|EFL42583.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 200 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ + I + L ++ D Sbjct: 23 RNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSVTTLLDY 82 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 I + V T +G Sbjct: 83 ERGPKVRIVPADQAVR-LWHTAEG 105 >gi|296329582|ref|ZP_06872068.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672779|ref|YP_003864450.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296153325|gb|EFG94188.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411022|gb|ADM36140.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 72 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+RIR R + G +QE + LGI+ + + E+G A+ +Q ++VL Sbjct: 7 GRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQGAADVLNISAD 62 >gi|228921183|ref|ZP_04084513.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838499|gb|EEM83810.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 292 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|225575392|ref|ZP_03784002.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM 10507] gi|225037337|gb|EEG47583.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM 10507] Length = 167 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 32/75 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++ R G SQ++L + L ++ Q + +E + + ++++ + + Sbjct: 9 LGEKLMTLRKKSGYSQQELADRLKVSRQTISNWELNQGAPSIGKAKELADIYKISLDDLV 68 Query: 75 DVSPTVCSDISSEEN 89 V + E + Sbjct: 69 GDEVEVVARKKREPD 83 >gi|145593721|ref|YP_001158018.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145303058|gb|ABP53640.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 196 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ + R+R R LG S ++L ++ + + E G + L ++ L Sbjct: 5 NEIEKVIRTRLRALRTTLGFSLDELAARTNLSPSTISRIETGKRTISLDVLLPLAAALHV 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + D+ ++E+ V+ + G Sbjct: 65 DLDSLL--------DVRNDEDVVIRPMPDRGG 88 >gi|299132768|ref|ZP_07025963.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298592905|gb|EFI53105.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 117 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + RR L ++Q L +GI+ + E G V + ++ LE F Sbjct: 11 GQAVATRRKGLNLTQATLAARVGISRASIANIESGRQNVLLHHVYRLASALE-----FSK 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 VS + + +D I + + + Sbjct: 66 VSDLLPAQPKPATQEDLDMILSDETV 91 >gi|317130604|ref|YP_004096886.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475552|gb|ADU32155.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 70 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G SQ +L + +G+T Q + EKG + +++ L+ + F + Sbjct: 4 NRVKELRARHGFSQTELAQRVGVTRQTIGFIEKGDFSPSIALSLRLAKHLDVRVDELFWL 63 Query: 77 SPTVCSD 83 + Sbjct: 64 DEEDIDE 70 >gi|260219700|emb|CBA26545.1| hypothetical protein Csp_E36330 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 117 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 49/100 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ ++LRR M+Q+++G +GI + V + E+G+ RL ++++ + I Sbjct: 12 KSIGRTLQLRREATSMNQDEVGLAIGIGKEAVSRMERGITMPTVQRLAELADLYKCGIDE 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S T +D + + +M+ + D + +I + Sbjct: 72 LLIESSTRTNDQAELISKIMNTLPDADRAMIVEVVQRIAE 111 >gi|323342820|ref|ZP_08083052.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463932|gb|EFY09126.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 68 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR +R LG +Q+ E +G++ Q V EKG S VL + F Sbjct: 6 IRDKREALGYTQQFFAEQVGVSRQTVIALEKGSYNPSLELAFKCSIVLNCTLDGLF 61 >gi|169830949|ref|YP_001716931.1| XRE family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169637793|gb|ACA59299.1| transcriptional regulator, XRE family [Candidatus Desulforudis audaxviator MP104C] Length = 83 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R+ G++Q +L +GI+ EKG I+ VL + F Sbjct: 8 LRSVRLRAGLTQAELARRVGISRTAYTNIEKGHKHPSLVTALRIARVLNEHVEDLF 63 >gi|154496785|ref|ZP_02035481.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC 29799] gi|150274037|gb|EDN01137.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC 29799] Length = 94 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I+ R G SQ L + L +T V +E G++ + I+++ + Sbjct: 2 IGDTIKRLREDAGFSQSALAKKLNVTRSAVNAWEMGLSVPTTQYVVDIAKLFRVSADY 59 >gi|145596662|ref|YP_001160959.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305999|gb|ABP56581.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 191 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R G++ +L E GI+ + + E G + L I+ P+ Sbjct: 12 IGPRLKRARAQRGVTLAELAEATGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKLV 71 Query: 75 DVS 77 DV Sbjct: 72 DVP 74 >gi|147920125|ref|YP_686112.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] gi|110621508|emb|CAJ36786.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] Length = 68 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R M+QE L + +G+ + + EKG +++VL + I F Sbjct: 4 RIKEYRAKYDMTQEDLAQKVGVRRETIVFLEKGKYNPSLKLAHDVAKVLNAKIDELFIFD 63 Query: 78 PTVCS 82 + Sbjct: 64 DETDA 68 >gi|84500123|ref|ZP_00998389.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] gi|84392057|gb|EAQ04325.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] Length = 830 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 23/130 (17%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R +G++ ++L G++ + + E G + VL S+ Sbjct: 573 GERLRSARKAVGLTLDELKVKTGLSKSYLSEMENGAKEIQRKHAVGFGPVLGVEPSWLLF 632 Query: 76 VSPTVCSDISSEEN----------NVMDFISTPDGLQLNRY-----------FIQIDDVK 114 +++ + + D + P L+ N Y ++ I+D+ Sbjct: 633 GKENAPETLATTDAAPLQPHGDVVYMQDPLDRPQTLEGNTYKLKWPDSEHAIYLTINDIV 692 Query: 115 V--RQKIIEL 122 V R++ E+ Sbjct: 693 VGGRRRPFEV 702 >gi|324993115|gb|EGC25035.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995581|gb|EGC27493.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327461381|gb|EGF07712.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] gi|327489239|gb|EGF21032.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] gi|332361469|gb|EGJ39273.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 94 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK+++ R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 2 LGKQLKFIREQRGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLD 58 >gi|300694645|ref|YP_003750618.1| transcriptional regulator, xre family [Ralstonia solanacearum PSI07] gi|299076682|emb|CBJ36021.1| putative transcriptional regulator, XRE family [Ralstonia solanacearum PSI07] Length = 216 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 VG RIR R LG++ L E G+ + K E+G + + ++ L Sbjct: 24 KEVGARIREARKALGLTLSALSERSGVALSTISKAERGDIALTYEKFAGLAHALG 78 >gi|296105405|ref|YP_003615551.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059864|gb|ADF64602.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 182 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 7/118 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + P+ + + K + R+ G+S ++ GI + + E G L + L Sbjct: 1 MTQPISV-IAKSLVRERLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVAL 59 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P + + PT E V+ + + + L R+ + L+ Sbjct: 60 DIPFARLLEPQQPTTQVIRRGEGTKVVAGQANYEAILLAAC-----PPGARRDVYLLI 112 >gi|289450421|ref|YP_003474597.1| Xre family toxin-antitoxin system antitoxin protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184968|gb|ADC91393.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 71 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +I R +G++Q KL +G+ + + YE I +VL I Sbjct: 4 LEVDNKICEYRKAMGLTQHKLARAVGLKRRSIMAYENKTISPTIETAYKICQVLGRDIKE 63 Query: 73 FF 74 F Sbjct: 64 VF 65 >gi|291299515|ref|YP_003510793.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568735|gb|ADD41700.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 388 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 4/102 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ RR G SQEKL E LG+ V ++E +++ L + Sbjct: 6 SRLAQRRKAAGFSQEKLAERLGVERSTVVRWETAETEPQPWLRLKLAQALGITTDDLHVL 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR-YFIQIDDVKVRQ 117 V + + + + P + L ++ +VRQ Sbjct: 66 LDDVEYVTAGPSDRMDYVLEHPASVDLVAVAYLH---ERVRQ 104 >gi|228912350|ref|ZP_04076044.1| hypothetical protein bthur0013_64220 [Bacillus thuringiensis IBL 200] gi|228847298|gb|EEM92258.1| hypothetical protein bthur0013_64220 [Bacillus thuringiensis IBL 200] Length = 108 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + +++E+ I Sbjct: 3 HLSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKADPDADSIMNLAEIYNVSIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDF 94 F + + S + + + D Sbjct: 63 FGRNAPLESKLEQIKVAISDL 83 >gi|228943194|ref|ZP_04105662.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975981|ref|ZP_04136501.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979104|ref|ZP_04139452.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228780630|gb|EEM28849.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228783738|gb|EEM31797.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816473|gb|EEM62630.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940189|gb|AEA16085.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 292 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|257785024|ref|YP_003180241.1| XRE family plasmid maintenance system antidote protein [Atopobium parvulum DSM 20469] gi|257473531|gb|ACV51650.1| plasmid maintenance system antidote protein, XRE family [Atopobium parvulum DSM 20469] Length = 197 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEE 88 + + LGE +G+ Q + +Y G + A + I++ + + + E Sbjct: 35 TYKDLGEAVGVRQQTISQYAAGQTQPTADVVLRIAQFFGVSVDYMLTGISAYNRSLHEEL 94 Query: 89 NNVMDFISTPDGLQLNRY---FIQIDDVKVR 116 + IS L R + Q+D + R Sbjct: 95 GLSEEAIS-----HLKRARDIYPQVDPDRTR 120 >gi|159039221|ref|YP_001538474.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918056|gb|ABV99483.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 402 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLES 68 G+RI+L R G++QE + G+T +K+E G V S I+ +L Sbjct: 12 GQRIKLYRRRAGLTQEVCAQLKGVTVSAWRKWESGERSVNTLSDWVDIARILRV 65 >gi|70727102|ref|YP_254016.1| hypothetical protein SH2101 [Staphylococcus haemolyticus JCSC1435] gi|68447826|dbj|BAE05410.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 305 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +GKRI+ R+ +G +Q + G+ + V +EKGV+ A RL+ I+ + Sbjct: 7 IGKRIKEIRLKIGKTQTQFGDLFSASKGNVATWEKGVSLPNAKRLKEIARL 57 >gi|52421239|ref|YP_087151.1| hypothetical protein BFp0025 [Bacteroides fragilis YCH46] gi|254885261|ref|ZP_05257971.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|255016592|ref|ZP_05288718.1| hypothetical protein B2_22006 [Bacteroides sp. 2_1_7] gi|319644450|ref|ZP_07998883.1| hypothetical protein HMPREF9011_04486 [Bacteroides sp. 3_1_40A] gi|52218760|dbj|BAD51352.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|194022233|gb|ACF32649.1| BUN24p11.7 [Bacteroides uniformis] gi|254838054|gb|EET18363.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|317384091|gb|EFV65068.1| hypothetical protein HMPREF9011_04486 [Bacteroides sp. 3_1_40A] Length = 104 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G+ I+ R ++QE+LG +G+ Q+ + E G N I+ V + Sbjct: 37 IGEAIKQARQSKNLTQEELGNLIGVQRAQISRIENGKN----LTFSTIARVFK 85 >gi|172057454|ref|YP_001813914.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989975|gb|ACB60897.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 69 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G +QE+ + +G+T Q + EKG I+ V E P+ F Sbjct: 5 NRVKSLRSSNGWTQEQFAQMIGVTRQTIISLEKGSYTPSLLLAMQITRVFERPVESIF 62 >gi|326445242|ref|ZP_08219976.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 305 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN +G R+ R G+S E+ GE G++ V +YE+G V +++ + V Sbjct: 16 PNARRRQLGYRLLELRNASGLSAEQAGEAAGVSKATVSRYERGKGNVRWNQVDQLCRVYG 75 >gi|312865005|ref|ZP_07725233.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311099116|gb|EFQ57332.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 69 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R + +SQ L +G+ Q + E G +++ L++ ++ F Sbjct: 2 NRVKEFRQLKKLSQLALAREIGVARQTINLIENGKYNPSLELCIKLAKSLDTDLNSLF 59 >gi|302521428|ref|ZP_07273770.1| DNA-binding protein [Streptomyces sp. SPB78] gi|302430323|gb|EFL02139.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 275 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R SQ++L + G++ + + + E G R L H+SE L+ P+ Sbjct: 10 VGALLRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPL 65 >gi|288818628|ref|YP_003432976.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|288788028|dbj|BAI69775.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|308752218|gb|ADO45701.1| transcriptional regulator of molybdate metabolism, XRE family [Hydrogenobacter thermophilus TK-6] Length = 336 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ G+SQE+L + G+ + E G +S+ L + F Sbjct: 3 NKVKEYRLKRGLSQEELAKLCGMPRSTLSAIESGRAVPSVEYAIKLSKALGCTVEELFGE 62 Query: 77 SP 78 Sbjct: 63 EE 64 >gi|224542029|ref|ZP_03682568.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM 15897] gi|224525086|gb|EEF94191.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM 15897] Length = 101 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G+R+R R+ +G SQE++ + + KYE G L + E+ + ++ Sbjct: 2 GERLRKARLKMGYSQEEVARRIDTHRTTIGKYENGECEPSIKVLAKLIEIYCTDANY 58 >gi|206562125|ref|YP_002232888.1| repressor protein [Burkholderia cenocepacia J2315] gi|198038165|emb|CAR54116.1| repressor protein [Burkholderia cenocepacia J2315] Length = 99 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ ++QE+LG GI +V +YEKG + Q ++ L P SF Sbjct: 4 KRLKQARLRTDLTQEQLGILAGIDEFSASARVNQYEKGKHAPTVQTSQRLARALLIPTSF 63 Query: 73 FFDVSPTVCS 82 ++ + + Sbjct: 64 LYEEDDLLAN 73 >gi|187476767|ref|YP_784791.1| transcriptional regulator [Bordetella avium 197N] gi|115421353|emb|CAJ47858.1| putative transcriptional regulator [Bordetella avium 197N] Length = 131 Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 8/108 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R++ G +Q+ L G++ + YE G R + ++ ++ VL + + Sbjct: 7 RLREARVLRGYTQQSLARVAGLSQSAIASYESGR-RQSSRAMRQLARVLRVRLDWLETGQ 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + S + + + QL QI R + +L+R+ Sbjct: 66 GPRDASPSFLLQDATSYCI--EEAQL-----QILQPHERSILEQLIRT 106 >gi|324329079|gb|ADY24339.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 300 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G++I+ R G S+++L E + + + EKG+ LQ+I L PI + Sbjct: 3 NIGEKIQFFRKKSGYSRQQLAEDI-CDTSTLYRIEKGLQSPRLDILQNICTKLNIPIDY 60 >gi|306838646|ref|ZP_07471482.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406289|gb|EFM62532.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 182 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + PI Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILD--GIPI 58 Query: 71 SF--FFDVSPTVCSDISSEENNVMDF 94 FF + P + + +++ Sbjct: 59 GMAEFFALEPDAPHRVFYQTEELVEI 84 >gi|258620564|ref|ZP_05715601.1| Helix-turn-helix domain protein [Vibrio mimicus VM573] gi|258587079|gb|EEW11791.1| Helix-turn-helix domain protein [Vibrio mimicus VM573] Length = 362 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ G++++L R+ G+S +GE L +T Q + E + ++++ +S +L Sbjct: 6 VNRFNGEQLKLARVAAGLSLADVGEALQVTRQYASRLENNAS-PSDAQIELLSSLLSVHT 64 Query: 71 SFFF 74 SFFF Sbjct: 65 SFFF 68 >gi|229186773|ref|ZP_04313930.1| Transcription regulator [Bacillus cereus BGSC 6E1] gi|228596708|gb|EEK54371.1| Transcription regulator [Bacillus cereus BGSC 6E1] Length = 137 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K I R +SQE+L +G+T Q + K+E+ L +SE + + Sbjct: 3 MKISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSEEMNISLDN 62 Query: 73 FFDVSPTVCSDISSEENNV 91 + + I + E + Sbjct: 63 LIKGNNGIKERIMNNEKAI 81 >gi|254489648|ref|ZP_05102850.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214041818|gb|EEB82459.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 189 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V + +++ R+ +SQ L E GI+ + + E G + S L ++ L F Sbjct: 16 HVSENLKVHRLAARLSQSALAEASGISRRMIVAVETGDANISLSSLDKLAAALGLT---F 72 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D+ +E N VM + P+ Sbjct: 73 TDLIRDPSQPSRNEVNEVMWRGAHPE 98 >gi|195978947|ref|YP_002124191.1| putative HTH-type transcriptional regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869400|ref|YP_002745348.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225871398|ref|YP_002747345.1| DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|195975652|gb|ACG63178.1| putative HTH-type transcriptional regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700802|emb|CAW95495.1| putative DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|225702676|emb|CAX00774.1| putative DNA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 67 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R G+SQ L + + +T Q + EKG ++ I F F Sbjct: 3 NRIQELRKSRGISQADLADMMCVTRQTIISLEKGRYNASLELAYKLATFFNLTIEDVFLF 62 Query: 75 D 75 + Sbjct: 63 E 63 >gi|170695594|ref|ZP_02886738.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] gi|170139581|gb|EDT07765.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] Length = 311 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 5/113 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV + +G+R+RL R GM++ L ++ + + E G L +++ L Sbjct: 17 PVLVALGERVRLLRARRGMTRRDLAHQSNVSERHLANLEMGSGNASLLVLAQLAQTLGCS 76 Query: 70 ISFFFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++ + ++ + + + L+ + D + R+ Sbjct: 77 VAALVGDPLSCSAEGEQILELLRDQPPAALQHSLETLRQSLAARSADPGRYRR 129 >gi|89101060|ref|ZP_01173900.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89084233|gb|EAR63394.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 71 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G SQ++L LG++ Q + EKG I++ ++ I F Sbjct: 3 NNLAELRKKHGFSQDRLAVRLGVSRQTIISIEKGKYSPSLPLAFQIAKTFDTTIEHIF 60 >gi|322436278|ref|YP_004218490.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321164005|gb|ADW69710.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 70 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RIR R+ G Q L E G+ + E+G + VG RL+ I L+S +S Sbjct: 8 LGQRIRDLRIARGWRQIDLAEHSGVHEVHLSLLERGKHEVGVQRLKDIVTALDSSLS 64 >gi|311063744|ref|YP_003970469.1| transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|310866063|gb|ADP35432.1| Transcriptional regulator [Bifidobacterium bifidum PRL2010] Length = 415 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 6 NLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|310286841|ref|YP_003938099.1| transcriptional regulator with helix-turn-helix domain [Bifidobacterium bifidum S17] gi|309250777|gb|ADO52525.1| Transcriptional regulator with helix-turn-helix domain [Bifidobacterium bifidum S17] Length = 415 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 6 NLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|309774761|ref|ZP_07669783.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308917446|gb|EFP63164.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +++ VG IR GM+Q++L +G T + + Y G + L I + Sbjct: 2 KKVTEINLKVGDAIRKGLQRKGMTQKELAMLVGSTQRSISSYINGNAQPPLDILSLICRI 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE ++ + + N + P L++ + F Q+ D K R +L++S Sbjct: 62 LEINMNQILQIP---------DYNFPGRMLHDPLELEVMKVFDQVPDEK-RITFTKLMKS 111 Query: 126 I 126 I Sbjct: 112 I 112 >gi|224282399|ref|ZP_03645721.1| Xre-type transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313139541|ref|ZP_07801734.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132051|gb|EFR49668.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 415 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 6 NLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|254509760|ref|ZP_05121827.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221533471|gb|EEE36459.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 172 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G++ ++ LG + + + E+ ++ S L+ I+E L P+S F S Sbjct: 2 RKARGLTLTEIAAKLGRSVGWLSQVERDMSAPSISDLRQIAECLGVPMSMLFAHSAAPAE 61 Query: 83 D 83 + Sbjct: 62 E 62 >gi|210635363|ref|ZP_03298499.1| hypothetical protein COLSTE_02430 [Collinsella stercoris DSM 13279] gi|210158426|gb|EEA89397.1| hypothetical protein COLSTE_02430 [Collinsella stercoris DSM 13279] Length = 224 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE---KGVNRVGASRLQHISEVLESPISFFF 74 R+ R LG+SQ +L G++ + +Q YE K +NR + ++ VL I Sbjct: 152 RLAKMRKRLGLSQRELAYRAGVSLRSIQMYEQRNKDINRAQVGSVAELARVLHCCIEDLL 211 Query: 75 DVSPTVCSDIS 85 +V + Sbjct: 212 EVDVGQLDNGG 222 >gi|297204896|ref|ZP_06922293.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197711669|gb|EDY55703.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 135 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 17/139 (12%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + +P +G+R++ R L MSQ+ + + GI + E+G RV + L+ ++ Sbjct: 7 DARARDPELTQLGERLKRTRDYLNMSQQFVSDNTGIPRSAISDIERGERRVDSLELKKLA 66 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P+++F + + L R Q+ D ++ ++E Sbjct: 67 RLYRQPVAYFLAEEENADAGEYALAG-------------LPRALAQLTDGD-QKTVMEFA 112 Query: 124 RSIV---SSEKKYRTIEEE 139 + ++EK+ E + Sbjct: 113 EYLSLRRAAEKEQEGSENQ 131 >gi|167747593|ref|ZP_02419720.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662] gi|239623031|ref|ZP_04666062.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652955|gb|EDR97084.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662] gi|239522610|gb|EEQ62476.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 120 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 5/82 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+ + IR R G + EKL E G++ + K E G+ + ++ E L Sbjct: 6 NIAQNIRTLREERGYTIEKLAERAGVSANHMSKVENGLRNLSMESYLNVLEALNV----- 60 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 + V ++E ++ FI Sbjct: 61 YPVLIESSDIGDTKEQYILAFI 82 >gi|81427850|ref|YP_394849.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609491|emb|CAI54537.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 251 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R+ +Q L + L ++ V +E G N + IS++ + Sbjct: 1 MNIGHQIKQNRLKREWTQGYLAQLLNVSRSTVSSWEVGRNYPDLETIVAISDLFAISLDK 60 Query: 73 FFDVSPTVCSDIS 85 + ++S Sbjct: 61 LLREDSVMTKEVS 73 >gi|134298751|ref|YP_001112247.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051451|gb|ABO49422.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 18/110 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R G+S +L G+ + E G + ++ I L ++ Sbjct: 1 MDIGSRIKKLRTYQGLSMNELSRRSGVAQSHLSYVESGQRQPTFDVIERICSGLGLSVAE 60 Query: 73 FF------------------DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF +V S +S +N +F T + L+L Sbjct: 61 FFNEGFMPSPYSSDINSLVNEVQNLKPSQVSLIKNIATEFSLTNEELELA 110 >gi|77405835|ref|ZP_00782918.1| conserved hypothetical protein [Streptococcus agalactiae H36B] gi|77409763|ref|ZP_00786418.1| transcription regulator, probable -related protein [Streptococcus agalactiae COH1] gi|77171623|gb|EAO74837.1| transcription regulator, probable -related protein [Streptococcus agalactiae COH1] gi|77175545|gb|EAO78331.1| conserved hypothetical protein [Streptococcus agalactiae H36B] Length = 79 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R+ +SQ L + +G+ Q + E ++E L++ ++ F Sbjct: 16 NRLREYRIKASISQLALAKSVGVARQTINLIENNKYNPSLDLCIRLAECLQTDLNTLF 73 >gi|320012087|gb|ADW06937.1| Cupin 2 conserved barrel domain protein [Streptomyces flavogriseus ATCC 33331] Length = 194 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 9/84 (10%), Positives = 28/84 (33%), Gaps = 2/84 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ +++ L I+ D Sbjct: 13 RNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 72 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 + + V + + + Sbjct: 73 EQGSQVRLVPADQMVR--LWSTEA 94 >gi|256397796|ref|YP_003119360.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364022|gb|ACU77519.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 223 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R ++ L + GI+ + + E G+ R +L ++ + Sbjct: 42 VGPRLKRLRQRSDITLTDLAKKTGISASTLSRLEAGLRRPTLEQLLPLARAHGVTLDELV 101 Query: 75 DVSPT 79 D PT Sbjct: 102 DAPPT 106 >gi|256377098|ref|YP_003100758.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921401|gb|ACU36912.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 188 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 20/117 (17%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V KR+R R+ G S + L ++ + + E G R+ +L +++ L++ + Sbjct: 8 LDSLVRKRVRALRLAQGWSLDDLATRAKLSPSTLSRIENGQRRLALDQLVTLAKALDTSL 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL---NRYFIQIDDVKV---RQKIIE 121 + ++ E+ V + P L R D + RQ++++ Sbjct: 68 DQLVE---------TAAEDVVTSPVHDPSHQALRWALRA-----DPGMSVIRQRLVD 110 >gi|283796253|ref|ZP_06345406.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291076190|gb|EFE13554.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 270 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 10/108 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFD 75 +R+ R G++ E+L + GI+ + YE N+ + L +++ E I + F Sbjct: 9 ERLWELRKDKGLNLEELSQKTGISKSALASYESDDNKEINHGSLIALADFYEVSIDYLF- 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + T + ++L + +I++ + + E+V Sbjct: 68 ---CRTENREQINTPLSELHLTDEAVELLKS-GRINN----RLLCEIV 107 >gi|212633084|ref|YP_002309609.1| hypothetical protein swp_0179 [Shewanella piezotolerans WP3] gi|212554568|gb|ACJ27022.1| hypothetical protein swp_0179 [Shewanella piezotolerans WP3] Length = 240 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R +SQ +L E +GI + K E + + + L + Sbjct: 1 MTLGKQIKHYRTARDLSQPELAEMMGIEQSYLSKLENDKSIPSNDVFRSLLTALSVNTTE 60 Query: 73 FFDVSPTV 80 F T Sbjct: 61 FLGGIDTQ 68 >gi|210608500|ref|ZP_03287876.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787] gi|210152991|gb|EEA83997.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787] Length = 119 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G ++ R ++Q +L E L ++ + YE + +L+ ++ I + Sbjct: 1 MNFGNNLKDLRETRNVTQGQLAEYLQVSRPTIAGYETKSRQPDFEKLEKLANYFHVSIDY 60 Query: 73 FFDVSPTVCSDIS 85 S T +DI Sbjct: 61 LVSGSETTSTDIP 73 >gi|85715308|ref|ZP_01046291.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85697954|gb|EAQ35828.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 483 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 15/112 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ +L E LGI+ V E+ V A L ++E + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVTAQILLRLAEAYD----- 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D+ +D + + S P F QID K Q++ +L Sbjct: 64 -LDLRDLATADEDRFFAELNEVFSDP-------LFRQIDIPK--QELRDLAE 105 >gi|77411971|ref|ZP_00788301.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] gi|77161997|gb|EAO72978.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] Length = 62 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ SQ L + +G++ Q + E +++ L + ++ F Sbjct: 2 NRVKDYRLETKKSQLALAKEIGVSRQTINMIENNKYNPSLDLCIKLAKALGTDLNALF 59 >gi|114566341|ref|YP_753495.1| hypothetical protein Swol_0803 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337276|gb|ABI68124.1| hypothetical protein Swol_0803 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 255 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ +S+ +L + +GI+ ++ YE+G R+ L ++ + Sbjct: 5 ERLQYLRLEKELSEIQLSKKVGISESVIRLYERGKLRIDLEHLHKLAAFFDVTPGLLLGT 64 Query: 77 S-PTVCSDISSEENNVMDFI 95 + P + + + E V++ + Sbjct: 65 AFPHLPPEEALESYRVVNKL 84 >gi|47564376|ref|ZP_00235421.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558528|gb|EAL16851.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 69 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R G +QE+L +G++ Q + EK I+ V E ++ FD Sbjct: 7 NKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSLTDVFDY 66 Query: 77 SPT 79 Sbjct: 67 LEE 69 >gi|327254477|gb|EGE66099.1| helix-turn-helix family protein [Escherichia coli STEC_7v] Length = 237 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ + G+SQ +L + +GI+ +QK G G+ ++ ++ L+ + Sbjct: 8 ERLNAAMSLAGVSQSQLADMVGISQPAIQKMSSGKTN-GSRKMVELANALKVRPEWLSSG 66 Query: 77 SPTVCSDISSEENNVMD 93 + E +NV + Sbjct: 67 IGEMRDGAHEEPSNVRE 83 >gi|317490219|ref|ZP_07948707.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] gi|316910713|gb|EFV32334.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+R+R R ++QE+L G+ + K E G ++ ++ L + Sbjct: 7 ILLGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLGQ 66 Query: 73 FFDV 76 F+ Sbjct: 67 LFEG 70 >gi|326775565|ref|ZP_08234830.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326655898|gb|EGE40744.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 395 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%) Query: 7 IPNPVDINVGKRIRLRRMILG--MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +P VG+RI R + M+Q++L ++ ++K E+G V + L +I+ Sbjct: 1 MPPTTAAQVGQRIAYYRRVARPRMTQQQLAAAAFVSLGTIRKVERGERGVSDNTLDNIAA 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 L S V + I + I+T Sbjct: 61 ALGIDPSRLVADREHVSTRIRDALPALSAAIAT 93 >gi|311742888|ref|ZP_07716696.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] gi|311313568|gb|EFQ83477.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] Length = 259 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G RIR R G+S +L L ++ V + E+G+ L + LE + Sbjct: 29 IAIGHRIRSAREAAGISVRELSRRLEVSPSHVSQVERGLASFSVRALYRVVSELEISMDS 88 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQ 102 F +V P +S+ + GL Sbjct: 89 LFGEVLPVPEVPAASDSPGPGPGAGSDGGLD 119 >gi|209517719|ref|ZP_03266556.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209501894|gb|EEA01913.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 291 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G +R R + G+SQ L GI+ +Q+ E G + G L +++ L+ P+ Sbjct: 15 LGSLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDTLLTLAQTLDVPL 70 >gi|86140990|ref|ZP_01059549.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] gi|85832932|gb|EAQ51381.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] Length = 66 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R L M+Q L + + ++ Q V EKG ++ V I F Sbjct: 3 NNIKELRAALKMTQSDLAQQIEVSRQTVNAIEKGKFDPSLPTAFRLAAVFNCSIEELF 60 >gi|15675737|ref|NP_269911.1| putative transcription regulator [Streptococcus pyogenes M1 GAS] gi|19746847|ref|NP_607983.1| transcription regulator [Streptococcus pyogenes MGAS8232] gi|21911201|ref|NP_665469.1| putative transcription regulator [Streptococcus pyogenes MGAS315] gi|28896578|ref|NP_802928.1| transcription regulator [Streptococcus pyogenes SSI-1] gi|50915002|ref|YP_060974.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10394] gi|56808043|ref|ZP_00365843.1| COG1476: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] gi|71911461|ref|YP_283011.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|94991225|ref|YP_599325.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94993168|ref|YP_601267.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|139474424|ref|YP_001129140.1| DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|209560078|ref|YP_002286550.1| Putative transcription regulator [Streptococcus pyogenes NZ131] gi|306826624|ref|ZP_07459929.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|13622957|gb|AAK34632.1| putative transcription regulator [Streptococcus pyogenes M1 GAS] gi|19749087|gb|AAL98482.1| putative transcription regulator [Streptococcus pyogenes MGAS8232] gi|21905413|gb|AAM80272.1| putative transcription regulator [Streptococcus pyogenes MGAS315] gi|28811832|dbj|BAC64761.1| putative transcription regulator [Streptococcus pyogenes SSI-1] gi|50904076|gb|AAT87791.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10394] gi|71854243|gb|AAZ52266.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS5005] gi|94544733|gb|ABF34781.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] gi|94546676|gb|ABF36723.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS2096] gi|134272671|emb|CAM30942.1| putative DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|209541279|gb|ACI61855.1| Putative transcription regulator [Streptococcus pyogenes NZ131] gi|304431202|gb|EFM34206.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 68 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R +SQ+ L + +G++ Q + EKG + I VL+ + F Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|308172787|ref|YP_003919492.1| Xre family transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307605651|emb|CBI42022.1| transcriptional regulator, XRE family [Bacillus amyloliquefaciens DSM 7] Length = 79 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 15 VGK-RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK RI G+S +L +G++ Q+ Y N R +I+ +L Sbjct: 7 VGKCRIPELCKKRGISLSQLAAMVGVSKTQMSDYVSLRNLPSIERTYNIAMMLGCAPEDL 66 Query: 74 FDVSPTVCSDISS 86 ++ S+ Sbjct: 67 YEWIEVSDSNTEG 79 >gi|307332662|ref|ZP_07611696.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306881694|gb|EFN12846.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 398 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P ++ + G RI R ++Q+ L ++ + K E G S + + L Sbjct: 1 MPQSIEEHTGARIARTRRERDLTQQGLAMRANVSKSLLSKVECGQRPASPSLIAACARAL 60 Query: 67 ESPISFF 73 S Sbjct: 61 SVTTSDL 67 >gi|307286682|ref|ZP_07566768.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306502160|gb|EFM71444.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315165266|gb|EFU09283.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 232 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMRDARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FF 73 + Sbjct: 66 WL 67 >gi|298372441|ref|ZP_06982431.1| transcriptional regulator [Bacteroidetes oral taxon 274 str. F0058] gi|298275345|gb|EFI16896.1| transcriptional regulator [Bacteroidetes oral taxon 274 str. F0058] Length = 66 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I++ R ++Q +L E +G++ Q + E G +S V E ++ F Sbjct: 5 IKVERARKNITQGQLAEMVGVSRQTINAIELGKYNPSTVLSLKMSRVFEVSVNDLF 60 >gi|291540446|emb|CBL13557.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 172 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 28/53 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 ++ + ++ R+ + Q ++ + L + +Q K E+GV + +L I ++L Sbjct: 10 HIAQNLKEYRISHNLKQTEMADLLKMNYQNYSKMERGVYQPSLDKLLEICDIL 62 >gi|292653871|ref|YP_003533769.1| Helix-turn-helix, putative [Haloferax volcanii DS2] gi|291369721|gb|ADE01949.1| Helix-turn-helix, putative [Haloferax volcanii DS2] Length = 66 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR++R ++QE+L +G++ Q + E ++ + + F Sbjct: 5 IRVKRAEEHITQEELATAVGVSRQTIYAIEHSRYDPSLELAFKLARYFDCSVEELF 60 >gi|257067141|ref|YP_003153397.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256799021|gb|ACV29676.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 81 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R GM+Q +LGE +G++ Q + E+G ++ V E + F Sbjct: 17 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSIVVALSLARVFEVKVEDIF 74 >gi|229190633|ref|ZP_04317630.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228592978|gb|EEK50800.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] Length = 292 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|227431574|ref|ZP_03913612.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352668|gb|EEJ42856.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 79 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ +SQ++L E +G++ Q + EKG I+ + ++ F Sbjct: 9 INNKVYEFRVLARLSQQELAEKVGVSKQTIFVMEKGKYFPTLLLAFRIATFFKVDLTDIF 68 Query: 75 DVSPTVCSD 83 + Sbjct: 69 SYDIGGTEN 77 >gi|227511053|ref|ZP_03941102.1| DNA-binding protein [Lactobacillus buchneri ATCC 11577] gi|227085795|gb|EEI21107.1| DNA-binding protein [Lactobacillus buchneri ATCC 11577] Length = 369 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 I R SQ++L + LGIT V K+E G S L I+ ++ I Sbjct: 8 NIANLRKQNHKSQQQLADFLGITKASVSKWENGQTSPDISSLPLIAAYFDTSIDHL 63 >gi|224541773|ref|ZP_03682312.1| hypothetical protein CATMIT_00945 [Catenibacterium mitsuokai DSM 15897] gi|224525300|gb|EEF94405.1| hypothetical protein CATMIT_00945 [Catenibacterium mitsuokai DSM 15897] Length = 68 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R+ G+SQE+LG ++ + E+G V + ++ L + FD Sbjct: 8 GMRIKELRVQQGISQEELGFRCHLSKNYISDVERGTRNVSLKAIDQFAKGLGITLKELFD 67 >gi|90020428|ref|YP_526255.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950028|gb|ABD80043.1| conserved hypothetical protein [Saccharophagus degradans 2-40] Length = 164 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R+ G+SQE+L E G++ + +Q+ E G +RV + L+ ++ + Sbjct: 3 IRKLRLDRGISQEQLAEATGLSIRTIQRVEAG-HRVSYASLRVLAATFNINVD 54 >gi|116669412|ref|YP_830345.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609521|gb|ABK02245.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 191 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ + + +G RIR R ++ E++ + G+T + + E+ + + L + +VL Sbjct: 8 PSNIPVAIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLS 67 Query: 68 SPISFFFDVSPT 79 I F T Sbjct: 68 ISIGDLFAAPET 79 >gi|22537286|ref|NP_688137.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|25011245|ref|NP_735640.1| hypothetical protein gbs1196 [Streptococcus agalactiae NEM316] gi|77413033|ref|ZP_00789235.1| conserved hypothetical protein [Streptococcus agalactiae 515] gi|22534155|gb|AAN00010.1|AE014243_16 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|23095669|emb|CAD46855.1| Unknown [Streptococcus agalactiae NEM316] gi|77160931|gb|EAO72040.1| conserved hypothetical protein [Streptococcus agalactiae 515] gi|319745147|gb|EFV97471.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 65 Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R+ +SQ L + +G+ Q + E ++E L++ ++ F Sbjct: 2 NRLREYRIKASISQLALAKSVGVARQTINLIENNKYNPSLDLCIRLAECLQTDLNTLF 59 >gi|332981127|ref|YP_004462568.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698805|gb|AEE95746.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 74 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+++ R G + +L + G++ + E + L I+ LE ++F Sbjct: 2 IGKKLKSIRNKRGYTLRQLEKLSGVSHGFLCDIEHDRSDPSLETLHKIANALEIEPAYFL 61 Query: 75 DVSPTVCS 82 + + T Sbjct: 62 NNANTDEQ 69 >gi|331084259|ref|ZP_08333364.1| hypothetical protein HMPREF0992_02288 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401794|gb|EGG81371.1| hypothetical protein HMPREF0992_02288 [Lachnospiraceae bacterium 6_1_63FAA] Length = 176 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + + +RI R++ GM+Q+ LG +G + ++ +YE G + A +++VL+ Sbjct: 1 MAISERIHFFRLMRGMTQKYLGTAIGFPEKSADVRLAQYETGTRKPKADLTNALAQVLDV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|322517691|ref|ZP_08070554.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322123679|gb|EFX95271.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 114 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +++ R+ ++Q+ L + +G++ Q + EKG I + L+ Sbjct: 5 KLKSARVAKDLTQQGLADAIGVSRQTISPIEKGDYNPTMDLYIAICKTLD 54 >gi|302870809|ref|YP_003839445.1| hypothetical protein COB47_0084 [Caldicellulosiruptor obsidiansis OB47] gi|302573668|gb|ADL41459.1| protein of unknown function DUF955 [Caldicellulosiruptor obsidiansis OB47] Length = 373 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I + ++L + +G+T Q + KY +G + + +L I+E P+ +F Sbjct: 7 IGNNILALMKKQNVKIKQLADLIGVTRQTMTKYLEGEVIIDSEKLFKIAEFFGKPLDYFL 66 Query: 75 D 75 + Sbjct: 67 E 67 >gi|302335294|ref|YP_003800501.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319134|gb|ADK67621.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 136 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 49/109 (44%), Gaps = 14/109 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R R +G+SQ ++ LG++ + +E G +GA R++ + ++L + Sbjct: 32 NNLRYLRDKVGLSQVQVAAQLGVSSKTYSSWETGRTELGAERIRALCDLLGCTPNDVLGY 91 Query: 77 -SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 T + +++ E ++D + ++ VR ++E++R Sbjct: 92 RGHTSFAPVTTIEETIVDL------------YGRLA-PNVRMAVLEIMR 127 >gi|291287416|ref|YP_003504232.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884576|gb|ADD68276.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 182 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GK ++ R+ M+ L + G + + + E+ + + L+ I++ L I+ Sbjct: 1 MEFGKTVKELRLKHNMTLRDLAKTSGCSISFLSQLERDLISPTVASLRKIADALGVTITS 60 Query: 73 FFDVSPTVCSDI 84 FF + I Sbjct: 61 FFSGDDSETDSI 72 >gi|104774539|ref|YP_619519.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423620|emb|CAI98566.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 116 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ ++ R LG+SQ+++ ++ Q + E G R+ A L I + F Sbjct: 7 VGELLKRIRSDLGLSQKQMAGMT-MSVTQYSRIESGDQRIIADDLFEILTAQQVSARCFV 65 Query: 75 DVSPTVCSDISSEENNVM 92 D + +++ V+ Sbjct: 66 DAMTNFDFERAADFTYVL 83 >gi|54027114|ref|YP_121356.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018622|dbj|BAD59992.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 410 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 VG+R+R R+ G+S E GI++ + + E+G + R I++ L S F Sbjct: 9 VGRRVREIRLWRGLSLEAAAGLAGISYGYLGRLERGEQALTNRRTLEHIAQALRVAPSEF 68 Query: 74 FDVSPTVCSDISSEEN 89 ++SE + Sbjct: 69 NGQPWEPGGAMTSEAH 84 >gi|50122571|ref|YP_051738.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] gi|49613097|emb|CAG76548.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 184 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R L +S +L + G+ + + E G+ L ++ L+ +S Sbjct: 14 IRRERERLNLSVTELAKRAGLAKSTLSQLESGIGNPSLETLWALAMALDVQVS 66 >gi|37678326|ref|NP_932935.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37197065|dbj|BAC92906.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 68 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G +R R + G+SQ+KL I V + E+G + + ++ +L + Sbjct: 9 GDNLRRERKLKGISQDKLAISADIDRSYVGRIERGEVNITLEKAYQLASILGCDV 63 >gi|322646512|gb|EFY43021.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 85 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R G+SQ LG +G ++ YEKG + L+ ++ L P+++ Sbjct: 9 ERLKEARCRAGLSQRSLGLLVGFDPASASSRMNHYEKGRHVPDIDTLRRMAAELNVPLNY 68 Query: 73 FF 74 FF Sbjct: 69 FF 70 >gi|312794927|ref|YP_004027849.1| transcriptional regulator [Burkholderia rhizoxinica HKI 454] gi|312166702|emb|CBW73705.1| Transcriptional regulator [Burkholderia rhizoxinica HKI 454] Length = 180 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R+ LG+SQE+ G+ + YE A L ++E L + + Sbjct: 17 IGARLREERLRLGLSQEEFAAIGGVLRRAQSHYESDERSPDAKYLSAVAE-LGVDLLYVL 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + SD + E +F + +L + +++ Sbjct: 76 RGT-RQASDEAGEAATSSEF--DTEEQELIENYRALNEA 111 >gi|266621408|ref|ZP_06114343.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288866922|gb|EFC99220.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 66 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R M QE+L + +G+ + + EKG +I++V + I F V Sbjct: 4 NRIKEYRARYDMKQEELADRVGVRRETIGNLEKGKYNPSLVLAWNIAKVFGATIEEIFTV 63 Query: 77 SPT 79 + Sbjct: 64 EES 66 >gi|256829205|ref|YP_003157933.1| XRE family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578381|gb|ACU89517.1| transcriptional regulator, XRE family [Desulfomicrobium baculatum DSM 4028] Length = 652 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 15/143 (10%) Query: 15 VGKRIRLRRMIL-----GMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLES 68 +G + RR L G S + + +GI + K E+G N R+ ++ +L Sbjct: 4 LGSYLTERRKALAAKHSGYSIRSVAKRIGIHHSYLSKLERGENAPLTEERIHALARLLGE 63 Query: 69 PISFFFDVSPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDD-VKVRQ-----KIIE 121 +S + I+ +N + F+ + + L+ + D +R+ ++ E Sbjct: 64 DPDLLMALSGKLSDRITGLIRSNPLLFLGSVEALEKQNA--SMPDAPALRKDLRKNELEE 121 Query: 122 LVRSIVSSEKKYRTIEEECMVEQ 144 L R + ++ + +E + +Q Sbjct: 122 LTRLLRDEIRERQVLESQLREQQ 144 >gi|225872075|ref|YP_002753530.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793611|gb|ACO33701.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 363 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 12/72 (16%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE--------- 64 V K I+ R L MSQ++ LG+ V ++E+G R +++ Sbjct: 108 QVAKNIKALRERLEMSQQRFALALGVDQGSVSRWERGKIRPTPETFARMAKLSDDEKKLY 167 Query: 65 VL---ESPISFF 73 L P S+F Sbjct: 168 FLEEAGVPASYF 179 >gi|254420939|ref|ZP_05034663.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196187116|gb|EDX82092.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 476 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R L ++Q + LG++ + E+ V A L ++E + + Sbjct: 9 LFLGARLKRLRRDLALTQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVDLR- 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP----------DGLQLNRYFIQIDDVKVR 116 ++ +++E + + ++ P + +QL + D +R Sbjct: 68 ------SLNQGGAADEARLGEVLADPLFAGLSLPRHELVQLLEEAPGVADAMLR 115 >gi|229918743|ref|YP_002887389.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229470172|gb|ACQ71944.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 150 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G ++ R ++Q++L E L + + YE + ++ V + P+ Sbjct: 5 GDLLKQLRKEKKLTQKELAEDLELDQSSISNYESNKKLPDVDTMMKMAIVFDVPV 59 >gi|169349906|ref|ZP_02866844.1| hypothetical protein CLOSPI_00645 [Clostridium spiroforme DSM 1552] gi|169293474|gb|EDS75607.1| hypothetical protein CLOSPI_00645 [Clostridium spiroforme DSM 1552] Length = 114 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+RI R +++E+L + +G++ + + YE+G L+ + E + Sbjct: 6 GERISYLRCECNLTREELCKIIGVSKRTIVAYEQGTRDPSVKTLRALVEYFNVSSDYILG 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY-FIQIDD 112 + P I EE + +I P +Q ++ + I+D Sbjct: 66 YTNKPLRLDAICKEEKS---YILLPKTIQESKAKYNSIND 102 >gi|220911740|ref|YP_002487049.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858618|gb|ACL38960.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 191 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ V + +G RIR R ++ E++ + G+T + + E+ + + L + +VL Sbjct: 8 PSNVPVAIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLS 67 Query: 68 SPISFFF 74 I F Sbjct: 68 ISIGDLF 74 >gi|30020574|ref|NP_832205.1| XRE family transcriptional regulator [Bacillus cereus ATCC 14579] gi|228958740|ref|ZP_04120453.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|229109926|ref|ZP_04239508.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|229127880|ref|ZP_04256866.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|229145086|ref|ZP_04273479.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|296503031|ref|YP_003664731.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|29896125|gb|AAP09406.1| Transcriptional regulator, XRE family [Bacillus cereus ATCC 14579] gi|228638407|gb|EEK94844.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228655645|gb|EEL11497.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|228673580|gb|EEL28842.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|228800955|gb|EEM47859.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296324083|gb|ADH07011.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 292 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|330718084|ref|ZP_08312684.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 67 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R SQ++L + G+T Q + E ++ +L + F Sbjct: 3 NNIKTLRKAQKFSQDELAQAAGVTRQTINAIENDKYDPSLELAFKLASILLVRVDELF 60 >gi|330812572|ref|YP_004357034.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380680|gb|AEA72030.1| putative transcription regulator, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 182 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ + I + N ++D ++L Sbjct: 58 MVEFFSEEILQEKPTQIVYKANELIDISDGAVTMKLV 94 >gi|319937771|ref|ZP_08012174.1| transcriptional regulator Cro/CI family protein [Coprobacillus sp. 29_1] gi|319807206|gb|EFW03820.1| transcriptional regulator Cro/CI family protein [Coprobacillus sp. 29_1] Length = 75 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I G+R++ R+I +SQE+L ++ V E+G V ++ ++ L+ P+ Sbjct: 4 INIKFGRRVKELRLIQNISQEELAFRCQLSKNYVSDVERGTRNVTLKVVEKFAQGLKVPV 63 Query: 71 SFFF 74 F Sbjct: 64 HILF 67 >gi|288559687|ref|YP_003423173.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288542397|gb|ADC46281.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 67 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R I ++Q++L + LG++ Q + E N I+ + I F Sbjct: 3 NNLKIYRAIENITQKELADELGVSRQTIVLIENNKNDPSLELAFKIAHKFDVKIEDIF 60 >gi|259418447|ref|ZP_05742365.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259345842|gb|EEW57686.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 133 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L +G+ + +E+ ++ A++L +S +L +S+ Sbjct: 17 GDRVAAARESAGMTQGQLARRMGVKKTTLIGWEQDLSEPRANKLSMLSGLLNVSMSWLLT 76 Query: 76 VSPTVCSDISSE 87 S S + Sbjct: 77 GEGDDLSAPSED 88 >gi|227523243|ref|ZP_03953292.1| DNA-binding protein [Lactobacillus hilgardii ATCC 8290] gi|227089630|gb|EEI24942.1| DNA-binding protein [Lactobacillus hilgardii ATCC 8290] Length = 369 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 I R SQ++L + LGIT V K+E G S L I+ ++ I Sbjct: 8 NIANLRKQNHKSQQQLADFLGITKASVSKWENGQTSPDISSLPLIAAYFDTSIDHL 63 >gi|168214025|ref|ZP_02639650.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] gi|170714494|gb|EDT26676.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] Length = 204 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 ++I R G+S+ +L +G++ + K E G + I+ VLE PI+ F + Sbjct: 5 EKITFYREKKGISKSQLAREIGVSPAYITKLENGEKSNPSLELKIKIANVLEQPITVFLE 64 Query: 76 VS 77 Sbjct: 65 ND 66 Score = 39.0 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ N+G +I+ +++ ++ E+L + GI Q++ + G L+ IS+ L+ Sbjct: 68 VNNNIGSKIKSAKILNNLNDEQLSKITGIDKLQLRSIQDGEINPTKIELEIISKALKLQA 127 Query: 71 SFFFDVSPTVCSDISSEEN 89 +F S + + E+ Sbjct: 128 DYFTKDSNVNIDETGNIED 146 >gi|169343424|ref|ZP_02864427.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] gi|169298510|gb|EDS80596.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] Length = 182 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I +G ++ R ++QE++ + L I YE L+ ISEV P+ Sbjct: 7 IKIGNSLKEIRKNHSLTQEEMAKALNIPRSTYANYENNKREPSKELLEKISEVFNIPL 64 >gi|167841756|ref|ZP_02468440.1| GP52 family protein [Burkholderia thailandensis MSMB43] Length = 114 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP G+R + RR LG+SQ+ + E +G++ + K E+G + + ++ L Sbjct: 1 MENP---EFGRRAKERREALGLSQKHVAELVGVSQPAIAKVERGGST-TTTNGFALARAL 56 Query: 67 ESPISFF 73 ++ + + Sbjct: 57 QTTLEWL 63 >gi|167760581|ref|ZP_02432708.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC 35704] gi|167661802|gb|EDS05932.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC 35704] Length = 184 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R G+S E+ I+ + + E+G S + +S L+ P+ Sbjct: 4 LNQIIAENLKEIRKGKGLSLEQASALTSISKSMLSQLERGEVNPTISTVYKLSLGLKVPV 63 Query: 71 SFFFDVSPTVCSDISSEE 88 + F P S E Sbjct: 64 TAFTLDKPKPFSKTGKSE 81 >gi|146280879|ref|YP_001171032.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145569084|gb|ABP78190.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] gi|327479148|gb|AEA82458.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 182 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGVRLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLK---KVLSGIPMS 57 Query: 72 F--FFDVSPTVCSDI 84 FF SD Sbjct: 58 LVEFFSPDFDQDSDT 72 >gi|221065656|ref|ZP_03541761.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|264679787|ref|YP_003279696.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|220710679|gb|EED66047.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|262210302|gb|ACY34400.1| transcriptional regulator, XRE family with [Comamonas testosteroni CNB-2] Length = 191 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G +R RR LG++ ++L + G++ + + E+G+ I++ L + Sbjct: 13 DALFGAAVRARRAQLGITLDQLAQASGVSPGALSRVERGLLATSLRNAMAIAQGLGCELG 72 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +P+ + E +D S + L L Sbjct: 73 ELVQSAPSAQITRAGENLRFVDEASGVERLALA 105 >gi|91777058|ref|YP_546814.1| XRE family transcriptional regulator [Methylobacillus flagellatus KT] gi|91711045|gb|ABE50973.1| transcriptional regulator, XRE family [Methylobacillus flagellatus KT] Length = 116 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R LG+SQ+ L + LG++ + Q YE G L I+ L + + + Sbjct: 2 RLIHERLKTEREALGLSQQALADQLGVSLRSQQNYEAGKRVPDGEYLAAIAS-LGADVLY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + S + L F + Sbjct: 61 ILTGQRNSAAPAESA--------LSKGDRVLLENFHAAPEQ 93 >gi|113968668|ref|YP_732461.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|113883352|gb|ABI37404.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-4] Length = 191 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K G++ + + E+G + + L I+ + + Sbjct: 4 INSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNTSL 63 Query: 71 SFFFDVSPTVCSDI 84 S F + +P + Sbjct: 64 STFLEPTPESQGAV 77 >gi|238798535|ref|ZP_04642013.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia mollaretii ATCC 43969] gi|238717622|gb|EEQ09460.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia mollaretii ATCC 43969] Length = 196 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R+ ++ ++L + +G + + K E V + L ++ LE+ IS Sbjct: 15 LGMRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 Query: 75 DVSPTVCSDIS-SEENNVMDFI--STPDGLQL 103 S S + + + F+ S G++L Sbjct: 75 AESWVADSPVLKPAQRSRKRFVHRSKQGGIEL 106 >gi|319745857|gb|EFV98148.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 153 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 5/88 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V +K+ N D I+ R ++Q++L L I + +E G N+ ++ Sbjct: 9 IVKEQKMANLSD-----NIKYFRKQNKLTQKELARKLKIAPTAISAWEVGRNKPLMDNIE 63 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE 88 ++ + P S + +S E Sbjct: 64 QMASIFGIPKSKLLGDEIYKIQETASPE 91 >gi|291521518|emb|CBK79811.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 118 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLH 61 Query: 68 SPISFFFDVSPTVCSD 83 + + ++ ++ Sbjct: 62 ISLDTLINPDISLENE 77 >gi|229032669|ref|ZP_04188632.1| hypothetical protein bcere0028_47050 [Bacillus cereus AH1271] gi|228728668|gb|EEL79681.1| hypothetical protein bcere0028_47050 [Bacillus cereus AH1271] Length = 79 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ + Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVTVE 65 Query: 72 FFFDVSPTVCSD 83 F + D Sbjct: 66 EIFTLVEGEEDD 77 >gi|254168446|ref|ZP_04875290.1| CBS domain pair protein [Aciduliprofundum boonei T469] gi|197622501|gb|EDY35072.1| CBS domain pair protein [Aciduliprofundum boonei T469] Length = 184 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 I+ RR LG +Q++L E G++ + K EKG + I L+ Sbjct: 8 IKERRKRLGWTQKELAERSGVSQSAITKIEKGDMNPSYTLAVKIFNALD 56 >gi|187733300|ref|YP_001879888.1| repressor protein C2 [Shigella boydii CDC 3083-94] gi|187430292|gb|ACD09566.1| repressor protein C2 [Shigella boydii CDC 3083-94] Length = 218 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 ++G+R+ R G++Q+ L + GIT + K E+G+ + L ++ L Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGITRVAISKAEQGLTKSFNGDTLFKVAAALGCSPQ 61 Query: 72 FF 73 + Sbjct: 62 WL 63 >gi|145300727|ref|YP_001143568.1| phage transcriptional protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142853499|gb|ABO91820.1| phage transcriptional protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 87 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N ++ + KR+R R + +S+ K + LGI ++ YE G +G Sbjct: 1 MTAQPTQINLLNHHAAKRLRQLREQMALSRPKFADLLGIPPTTIKNYELGYREIGGGLFL 60 Query: 61 HISEV--LESPISFF 73 I+ L+ I + Sbjct: 61 LIANHPDLKQHIDWL 75 >gi|114049187|ref|YP_739737.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890629|gb|ABI44680.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 191 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 30/74 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K G++ + + E+G + + L I+ + Sbjct: 4 INSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDI 84 S F + +P + Sbjct: 64 STFLEPTPESQGAV 77 >gi|327380975|gb|AEA52451.1| Transcriptional regulator [Lactobacillus casei LC2W] Length = 205 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N K++ RM M+Q L E L ++ V +E N + I+ + E + Sbjct: 4 MNFSKQLHQIRMAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDT 63 Query: 73 FFDVSPTVCSDISSEEN 89 P + + + Sbjct: 64 LILDDPKLNEKLIHDSK 80 >gi|325267595|ref|ZP_08134247.1| DNA-binding protein [Kingella denitrificans ATCC 33394] gi|324980945|gb|EGC16605.1| DNA-binding protein [Kingella denitrificans ATCC 33394] Length = 124 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 9/79 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-- 70 + V +IR+ R I SQE++ E L ++ K E+G + +L+ I+++ + Sbjct: 1 MEVHDKIRVMREINQWSQEEMAEKLAMSANGYAKIERGQTNINIEKLKQIAQIFNIDMVD 60 Query: 71 -------SFFFDVSPTVCS 82 +FFF + + Sbjct: 61 LIANQDKTFFFSIGDNNVN 79 >gi|322390694|ref|ZP_08064207.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142600|gb|EFX38065.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 151 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 30/79 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R ++Q ++ E + + ++E G + ++++ ++ + Sbjct: 9 GDRLRELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPNLEAVVKLAKLFDTTTDYLLG 68 Query: 76 VSPTVCSDISSEENNVMDF 94 + D+ +D Sbjct: 69 KTIYSTLDVVPPPITRIDL 87 >gi|261339922|ref|ZP_05967780.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] gi|288317836|gb|EFC56774.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] Length = 191 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 I + ++ + RIRL R G S +L + ++ + K E+G + A+ L +S Sbjct: 4 ISDNMNQRISARIRLERESRGWSLSELADRASVSRAMIHKIERGESSPTATLLARLSGAF 63 Query: 67 ESPIS 71 +S Sbjct: 64 GISMS 68 >gi|220920176|ref|YP_002495477.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944782|gb|ACL55174.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 193 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + R+R R G++ E L + G++ + E+ + A+ L+ +S L Sbjct: 7 DLDARLAARLRGLRTAQGLTLEALAQRCGVSRSMISLVERAESSPTATVLERLSAGLGVS 66 Query: 70 ISFFFDVSPTVCSDISS 86 ++ F SP D S Sbjct: 67 LAALF--SPEHREDASP 81 >gi|197285845|ref|YP_002151717.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194683332|emb|CAR44039.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 375 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +RL R+ +S E++ E +G T Q +Q+ E G ++ VL+ FF Sbjct: 4 GSNLRLARLYHELSLEQVAERVGKTRQYIQRLESGYALPTKELTDELAFVLQVLPEFF 61 >gi|197285559|ref|YP_002151431.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194683046|emb|CAR43543.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 186 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++I + + I R G+S ++ GI + + E G L I L P Sbjct: 7 PIEI-ISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIP 65 Query: 70 IS 71 S Sbjct: 66 FS 67 >gi|261407406|ref|YP_003243647.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283869|gb|ACX65840.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 201 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 37/79 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+++ + +++ R +S +K+ E GI+ + + E+G + + + I+ L+ Sbjct: 19 PINLILANNLKILREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLS 78 Query: 70 ISFFFDVSPTVCSDISSEE 88 S + + +S EE Sbjct: 79 FSSLINEPHSGTVVVSREE 97 >gi|191636948|ref|YP_001986114.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190711250|emb|CAQ65256.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327384151|gb|AEA55625.1| Transcriptional regulator [Lactobacillus casei BD-II] Length = 202 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N K++ RM M+Q L E L ++ V +E N + I+ + E + Sbjct: 1 MNFSKQLHQIRMAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDT 60 Query: 73 FFDVSPTVCSDISSEEN 89 P + + + Sbjct: 61 LILDDPKLNEKLIHDSK 77 >gi|167913747|ref|ZP_02500838.1| putative transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] Length = 86 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 25/69 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ +R R G+SQE L + V E G + + I LE S F Sbjct: 9 VGEVLRSLRRRKGLSQEALAHAADMERNYVSLIELGRHSPSVRVIWKICAALEVTPSAFL 68 Query: 75 DVSPTVCSD 83 + + Sbjct: 69 AAAEARLGE 77 >gi|183221596|ref|YP_001839592.1| putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911676|ref|YP_001963231.1| hypothetical protein LBF_2156 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776352|gb|ABZ94653.1| Hypothetical protein LBF_2156 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780018|gb|ABZ98316.1| Putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 93 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+ ++ R G+SQ L + +T QQ+ K E G+N S + L+ IS Sbjct: 28 VNISIELQSLREKKGLSQSDLAKKAHVTQQQLSKIENGINC-NLSTFLKVCHALDLEIS 85 >gi|71065694|ref|YP_264421.1| DNA-binding protein [Psychrobacter arcticus 273-4] gi|71038679|gb|AAZ18987.1| probable DNA binding protein, helix turn helix motif [Psychrobacter arcticus 273-4] Length = 101 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+ + +G+R++ +R+ L ++Q L E GI V + E G + ++ L Sbjct: 9 TPSEIAKILGERLKTQRLALNLTQAALAEKAGIGVSTVARIESGQGG-TLDNIIRLAMAL 67 Query: 67 ES--PISFFFDVSPTVCSDISSEENN 90 + FD+ PT D+ +++N Sbjct: 68 GMVHHFAELFDMVPTNIEDVIAKKNP 93 >gi|134298370|ref|YP_001111866.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051070|gb|ABO49041.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 100 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 M+QE+L + LG T QV YE+G L+ I++ + + Sbjct: 1 MTQEQLAQQLGFTRGQVSNYEQGSREPDFETLKKIADFFKVTTDY 45 >gi|56808878|ref|ZP_00366588.1| COG1396: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] Length = 250 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++++ R+ +S+E L G+ ++ +Q+ + E G + S++ I++ L + + Sbjct: 4 HFGGKVKVLRLEKRISREDLCGDESELSVRQLARIELGQSIPSLSKVIFIAKALNVSVGY 63 Query: 73 FFDVSP 78 D + Sbjct: 64 LTDGAD 69 >gi|323691263|ref|ZP_08105538.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323504603|gb|EGB20390.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 126 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R LG++ EK GE LG+T + + EKG + + I + Sbjct: 4 GERIKDVRNSLGLTLEKFGEKLGVTKTAISRLEKGERSLTEQMTKSICREFSVDYMWLTT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 + + + +D I + Sbjct: 64 GEGEMFVETDDDFFERIDRIMAGE 87 >gi|323359481|ref|YP_004225877.1| hypothetical protein MTES_3033 [Microbacterium testaceum StLB037] gi|323275852|dbj|BAJ75997.1| hypothetical protein MTES_3033 [Microbacterium testaceum StLB037] Length = 1354 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 11/99 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR+ R G+ Q +L +G+ Q V +E+G +R S+L + VL + Sbjct: 5 LGTLIRVSRTATGLDQAELARAMGVGQQTVSAWERGRSRPRQSQLPGLCSVLGLSLD--- 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 D ++ + +D + L L F + D Sbjct: 62 --------DATAAGSYEVDAANATHNLVLTLPFENLSDE 92 >gi|317489385|ref|ZP_07947897.1| hypothetical protein HMPREF1023_01596 [Eggerthella sp. 1_3_56FAA] gi|316911492|gb|EFV33089.1| hypothetical protein HMPREF1023_01596 [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 29/76 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G+SQ+ L + ++ Q V +E L +S + + + Sbjct: 1 MELGSQIKRHRTERGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDE 60 Query: 73 FFDVSPTVCSDISSEE 88 + S + Sbjct: 61 LIKGDVEAMKEAISND 76 >gi|303327832|ref|ZP_07358272.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp. 3_1_syn3] gi|302862193|gb|EFL85127.1| transcriptional regulator, Cro/CI family [Desulfovibrio sp. 3_1_syn3] Length = 227 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R RR+ L + ++ L +G++ +Q+YE G +SE L + + Sbjct: 17 ERLRQRRVQLALRKQDLAAQVGVSLTTIQQYENG-QLPKGEFAVRLSEALRCSLDWLLAG 75 Query: 77 SPTVCSDISSEEN 89 D+ Sbjct: 76 KGDADGDVLDTPE 88 >gi|229150689|ref|ZP_04278903.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|228632776|gb|EEK89391.1| Transcriptional regulator, Xre [Bacillus cereus m1550] Length = 292 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|225405510|ref|ZP_03760699.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] gi|225042963|gb|EEG53209.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R +G+SQE+ L ++ Q V E G I++ + I F Sbjct: 3 QLRKEMGLSQEEFARALRVSRQTVSSIENGKYNPSLELAFQIADFFQKTIEELF 56 >gi|254465799|ref|ZP_05079210.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacterales bacterium Y4I] gi|206686707|gb|EDZ47189.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacterales bacterium Y4I] Length = 188 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+S E + G++ V + E+G + + L +++ L+ + + Sbjct: 14 ARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLES 73 Query: 77 SP 78 Sbjct: 74 GD 75 >gi|162148383|ref|YP_001602844.1| hypothetical protein GDI_2602 [Gluconacetobacter diazotrophicus PAl 5] gi|161786960|emb|CAP56545.1| hypothetical protein GDI2602 [Gluconacetobacter diazotrophicus PAl 5] Length = 86 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG I R G++Q L + +G+ + +E G + L + L+ P S Sbjct: 11 VAVGAIIERERKRSGVTQTDLAKAIGVQSNAIWGWETGARLPRMNHLFDLLWELDVPQSV 70 Query: 73 FFDVSPTVC 81 F ++ Sbjct: 71 FLEILAADA 79 >gi|163733254|ref|ZP_02140698.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161393789|gb|EDQ18114.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 187 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 7 IPNPVDINVGK---RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + D +G+ R++ R + G+S + + + G++ V + E+G + S L +++ Sbjct: 1 MTEETDQILGQLPARLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLT 60 Query: 64 EVLESPISFFFDVSPT 79 L+ + DV+ T Sbjct: 61 RALQVDFAGLLDVAAT 76 >gi|163782866|ref|ZP_02177862.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1] gi|159881987|gb|EDP75495.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1] Length = 71 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R G+SQE+ +GI ++++ E+G + L +IS++ + + Sbjct: 2 VGERVRKLREEKGLSQEEFARRIGIPVDRLREIEEGRLEPCDATLVYISKLFDVSFWWLK 61 Query: 75 DVSPTVCS 82 + V Sbjct: 62 EGRKEVAE 69 >gi|88803785|ref|ZP_01119308.1| transcription regulator [Polaribacter irgensii 23-P] gi|88780313|gb|EAR11495.1| transcription regulator [Polaribacter irgensii 23-P] Length = 257 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N+ K I+ R + ++QE L E L +T ++ YE+ + L S PI Sbjct: 3 NLSKNIKHLRTLKKLTQESLAEELSVTRSRISSYEENRSSPTIDFLIDFSAYFRIPID 60 >gi|325660973|ref|ZP_08149600.1| hypothetical protein HMPREF0490_00332 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472480|gb|EGC75691.1| hypothetical protein HMPREF0490_00332 [Lachnospiraceae bacterium 4_1_37FAA] Length = 65 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R M QE+L +G+ + + EKG +I++ I F V Sbjct: 4 NRIKEYRARFDMKQEELAAKVGVRRETIGNLEKGKYNPSLVLAWNIAKTFHVTIEEIFTV 63 Query: 77 SP 78 Sbjct: 64 EE 65 >gi|229091875|ref|ZP_04223064.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-42] gi|228691455|gb|EEL45214.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-42] Length = 433 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NK+ N + +G+RIR RM G++Q +L + + + + E G + +S ++ +S Sbjct: 5 NKESKN---MEIGERIRHVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKVS 60 Query: 64 EVLESPISFFFDVS 77 + LE + + + Sbjct: 61 KKLEVKSDYLINGN 74 >gi|259909520|ref|YP_002649876.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] gi|224965142|emb|CAX56674.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] Length = 136 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ R +Q+++ +G+ Q KYE G++ A +L ++E+ + I + Sbjct: 19 GKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELFTTTIDYL 76 >gi|260587216|ref|ZP_05853129.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|283798210|ref|ZP_06347363.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|260542411|gb|EEX22980.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|291074079|gb|EFE11443.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 86 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG---ASRLQHISEVLESPIS 71 ++++ R G+SQ +L E G+ + QKYE+G + S L I + L +S Sbjct: 12 EKLQKLRQAAGLSQSQLAEAAGVNVRMYQKYEQGDRDISKAQLSTLLRICKALSCKLS 69 >gi|148989990|ref|ZP_01821265.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|194397378|ref|YP_002038572.1| transcriptional regulator PlcR [Streptococcus pneumoniae G54] gi|147924650|gb|EDK75736.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|194357045|gb|ACF55493.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae G54] Length = 299 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGVSRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPT 79 Sbjct: 61 SLMPDFSA 68 >gi|158313503|ref|YP_001506011.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158108908|gb|ABW11105.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 214 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 8/104 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + L GI+ + + E G R+ L +++ + P+ Sbjct: 14 VGPRLRALRKQNGTTLPALSRVTGISVSTLSRLESGQRRLTLELLLPLAKAYQVPLDELV 73 Query: 75 DVSPTVCSDISSEENN-----VMDFISTPDGLQLNRYFIQIDDV 113 PT + V+ P GL R F I Sbjct: 74 GTPPTGDPRVLPRPFERDGMTVVPLTRRPGGL---RSFKMIFPP 114 >gi|327309856|ref|YP_004336754.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326955191|gb|AEA28887.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 287 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 24/46 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 +G R+R RR G++ +LG LGI+ V K E G RV + Sbjct: 7 QLGARLRSRRKAAGLTGTELGRLLGISQATVSKLENGQARVDEELV 52 >gi|325956992|ref|YP_004292404.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325333557|gb|ADZ07465.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 122 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I+ R ++Q +L + L ++ Q V +E G G+ L +++ + + Sbjct: 11 NNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAIPGSDTLDILADFFDVSTDYLLGR 70 Query: 77 SPTVCSDISS 86 D ++ Sbjct: 71 ETNSKKDNTA 80 >gi|296110774|ref|YP_003621155.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832305|gb|ADG40186.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 171 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ +R L ++Q +L E L ++ + + +E G + +I+++L + Sbjct: 7 IKTKRQELNITQSELAEKLFVSNKTISNWETGKTMPDLDNVLYIAKILRISLD 59 >gi|258646905|ref|ZP_05734374.1| toxin-antitoxin system, antitoxin component, Xre family [Dialister invisus DSM 15470] gi|260404347|gb|EEW97894.1| toxin-antitoxin system, antitoxin component, Xre family [Dialister invisus DSM 15470] Length = 262 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++G +I++ R LG+S E+ G+ T V +E G RL ++E+ PI+ Sbjct: 11 HLGLKIKILRYKLGLSMEEFGKIFNATKGSVSGWESGKVIPNIERLHQMAEMENIPIT 68 >gi|326203818|ref|ZP_08193680.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985916|gb|EGD46750.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 67 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R+ ++Q+K+ + G+ + K E G R + I+EVL + F+D Sbjct: 5 LKDLRIAKNLTQQKVAKLAGVDVTTINKIELGGRRPSPDTAKAIAEVLGFEWTKFYDEEQ 64 Query: 79 TVC 81 Sbjct: 65 ESA 67 >gi|228949440|ref|ZP_04111697.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810236|gb|EEM56600.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 138 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VGK I+ R I G+S++++ E L T++ V +E G ++L+ I+ L +S Sbjct: 19 VGKNIKKLRAIKGVSRKEMAEDLNTTYRTVSSWETGEKTPRLNKLEEIATYLNVSVS 75 >gi|187932496|ref|YP_001886375.1| hypothetical protein CLL_A2186 [Clostridium botulinum B str. Eklund 17B] gi|187720649|gb|ACD21870.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 78 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R++ R ++QE+LG+ +G + Q + E IS+V I F F Sbjct: 3 NRLKEFREANKLTQEQLGKLVGTSRQAINAIETEKYEPSIWLAYDISKVFNCSIEEVFIF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESK 66 >gi|49480398|ref|YP_039247.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331954|gb|AAT62600.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 63 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NKVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|87121237|ref|ZP_01077127.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121] gi|86163394|gb|EAQ64669.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121] Length = 186 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++I V K ++ R LG+S ++ GI + + E G+ L +S L+ P Sbjct: 8 PIEI-VAKALKRERRKLGVSMAEIARQAGIAKSTLSQLESGIGNPSLETLWALSIALQVP 66 Query: 70 ISFFFDVSPTVCS 82 S +VS + Sbjct: 67 FSKLIEVSSSQVQ 79 >gi|332366465|gb|EGJ44213.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 94 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK+++ R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLD 58 >gi|327474019|gb|EGF19432.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 94 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK+++ R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLD 58 >gi|307301170|ref|ZP_07580932.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307321071|ref|ZP_07600476.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306893243|gb|EFN24024.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903626|gb|EFN34213.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 192 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 2/97 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ + R+R RM ++ + L G++ + + E+G A L + L + Sbjct: 7 PLEETMAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQLLAKLCSALGTT 66 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +S F + S ++ P+ L R Sbjct: 67 LSALFASERSEASPLARHAE--QRLWRDPESGYLRRS 101 >gi|255011059|ref|ZP_05283185.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12] gi|313148864|ref|ZP_07811057.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313137631|gb|EFR54991.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 151 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+++ G IR R+ + Q+ L + +T V KYEK + + L + L P+ Sbjct: 10 VNVHHGHNIRRTRIEKNIKQDALAALVNMTQPNVSKYEK-MRVIEDEMLNRFARALNVPV 68 Query: 71 SFF 73 + Sbjct: 69 EYL 71 >gi|256423759|ref|YP_003124412.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038667|gb|ACU62211.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 111 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N GK I R L SQ L + ++ + KYE+G + I++ L + + Sbjct: 1 MNTGKIIADLRDKLAWSQTDLADKSSVSRVMIGKYERGEAVPSIDAAKRIADALGVSLDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|228987486|ref|ZP_04147605.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772218|gb|EEM20665.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 115 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKRLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASYFNTS 59 >gi|254466475|ref|ZP_05079886.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206687383|gb|EDZ47865.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 110 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 11/111 (9%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q +L LGI + +E+ + A++L ++ VL +S+ S+ + Sbjct: 1 MTQGQLARRLGIKKSTLSAWERDLAEPRANKLTMLAGVLNVSMSWLLTGEGEGMSEPAPL 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEE 138 E DF S + L+ R ++RQ EKK RT+ + Sbjct: 61 ELEAGDFTSILNELRDLRS-------EMRQN----AERAARLEKKLRTLLQ 100 >gi|28631122|gb|AAO49680.1| Eag0009 [Haemophilus influenzae] gi|301169931|emb|CBW29535.1| unnamed protein product [Haemophilus influenzae 10810] Length = 130 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 24/133 (18%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-- 70 + V +IR+ R I SQE++ E L ++ K E+G + + +LQ I+ V + Sbjct: 1 MEVHDKIRVMREINQWSQEEMAEKLSMSPNGYAKIERGQSSINLDKLQQIANVFNIDMGE 60 Query: 71 -------SFFFDVSPTVCSD-----------ISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S FF V + +++E + ++ D L L + + D+ Sbjct: 61 LITCKDRSIFFAVGGDNSYNLTNSHFGTNEVLTAENEKLNSLLTMKDTL-LAQ---KDDE 116 Query: 113 VKVRQKIIELVRS 125 +K ++IIEL++S Sbjct: 117 IKALKEIIELLKS 129 >gi|15964024|ref|NP_384377.1| hypothetical protein SMc00351 [Sinorhizobium meliloti 1021] gi|15073200|emb|CAC41708.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] Length = 197 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 2/97 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ + R+R RM ++ + L G++ + + E+G A L + L + Sbjct: 12 PLEETMAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQLLAKLCSALGTT 71 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +S F + S ++ P+ L R Sbjct: 72 LSALFASERSEASPLARHAE--QRLWRDPESGYLRRS 106 >gi|134298461|ref|YP_001111957.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051161|gb|ABO49132.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 64 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R IL MSQE+L E +G+T Q + E G I + L + F Sbjct: 5 KMKSARAILDMSQEQLAEAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLDEIF 61 >gi|186685912|ref|YP_001869108.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468364|gb|ACC84165.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 75 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +R R L +SQ KL LG++F V ++E G R ++ I ++L Sbjct: 13 VRETRQYLKLSQVKLATMLGVSFHTVNRWENGRTRPSPLAMKQIEKLL 60 >gi|317472617|ref|ZP_07931934.1| hypothetical protein HMPREF1011_02284 [Anaerostipes sp. 3_2_56FAA] gi|316899903|gb|EFV21900.1| hypothetical protein HMPREF1011_02284 [Anaerostipes sp. 3_2_56FAA] Length = 369 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 24/51 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R G++Q++L +G++ V K+E G + + L ++ + Sbjct: 12 KKRKEKGITQDQLAAYIGVSKASVSKWETGQSYPDITFLPQLAAYFNMSVD 62 >gi|304406701|ref|ZP_07388356.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304344234|gb|EFM10073.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 121 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 33/81 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R++ R M+Q+ + + + + YE ++ ++++ + I + Sbjct: 1 MTFGERLKELREQRNMTQQDVAIAVNKSRTDIAGYETKGTSPNIETVRRLADLFKVSIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 F + + EE+ + Sbjct: 61 MFGRTNDPYQLFTREEDMSPE 81 >gi|291537213|emb|CBL10325.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 177 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 28/53 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 ++ + ++ R+ + Q ++ + L + +Q K E+GV + +L I ++L Sbjct: 10 HIAQNLKEYRISHNLKQTEMADLLKMNYQNYSKMERGVYQPSLDKLLEICDIL 62 >gi|270292315|ref|ZP_06198526.1| putative transcriptional repressor [Streptococcus sp. M143] gi|270278294|gb|EFA24140.1| putative transcriptional repressor [Streptococcus sp. M143] Length = 69 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ ++Q L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRRLGKTLDQLF 62 >gi|228937302|ref|ZP_04099955.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822360|gb|EEM68336.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 127 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VGK I+ R I G+S++++ E L T++ V +E G + ++L+ I+ L + Sbjct: 8 VGKNIKKLRAIKGVSRKEMAEDLNTTYRTVSSWETGEKKPRLNKLEEIASYLNVSV 63 >gi|209883535|ref|YP_002287392.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209871731|gb|ACI91527.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 202 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 V ++G+RIR R GMS E+L G+T + K E+ + + +S V Sbjct: 19 VSSSLGERIRFARQQRGMSLEQLATATGLTKSYLSKVERQLAVPSITTALKVSRVFG 75 >gi|94993432|ref|YP_601530.1| transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|94546940|gb|ABF36986.1| Transcriptional regulator [Streptococcus pyogenes MGAS10750] Length = 303 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++++ R+ +S+E L G+ ++ +Q+ + E G + S++ I++ L + + Sbjct: 4 HFGGKVKVLRLEKRISREDLCGDESELSVRQLARIELGQSIPSLSKVIFIAKALNVSVGY 63 Query: 73 FFDVSP 78 D + Sbjct: 64 LTDGAD 69 >gi|330875276|gb|EGH09425.1| transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965856|gb|EGH66116.1| transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 149 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-- 72 +G R++ R+ L +SQ LG G+ YE GV A L I++ +++ Sbjct: 4 IGPRLKKERLRLKISQSALGAIGGVETNAQGNYENGVRSPRADYLSRIADA-GVNVTYVV 62 Query: 73 --FFDVSPTVCSDISSEENN 90 F D SPT+ + ++ + + Sbjct: 63 TGFSDYSPTLTAKATTSQES 82 >gi|260433557|ref|ZP_05787528.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260417385|gb|EEX10644.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 207 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G + P PVD +G R+R R + E+ G+ + K E G L+ + Sbjct: 17 GTRTEPEPVD--LGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKL 74 Query: 63 SEVLESPISFFF 74 + LE + F Sbjct: 75 ATGLEISVPQLF 86 >gi|259502266|ref|ZP_05745168.1| DNA-binding protein [Lactobacillus antri DSM 16041] gi|259169884|gb|EEW54379.1| DNA-binding protein [Lactobacillus antri DSM 16041] Length = 204 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ +R LG++Q + L +T Q + +E+G + + L +SEV + Sbjct: 6 QIKEQRKKLGLTQADVAHQLFVTRQTISNWEQGKSYPDLAMLVKLSEVYRISLDTLLKGD 65 >gi|253581969|ref|ZP_04859193.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251836318|gb|EES64855.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 181 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + +R+R R G+ Q K+ E L I Q YE R+ L ++ I + Sbjct: 8 ITLAQRLRELREEKGLLQLKVAEALEIPRSSYQGYETASKRLSLEALDKLAFYFNVSIDY 67 Query: 73 F 73 Sbjct: 68 L 68 >gi|212691942|ref|ZP_03300070.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855] gi|212665544|gb|EEB26116.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855] Length = 142 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N+G IR R+ G++QE+LG+ +G+ Q+ K E G + + + + L S Sbjct: 7 NIGLMIRNERLRKGLTQEELGKRIGVGKAQISKIESGK-GLTIKTITKVLDALGMSAS 63 >gi|154504997|ref|ZP_02041735.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC 29149] gi|153794880|gb|EDN77300.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC 29149] Length = 147 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 28/53 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R ++QE++ + + +T Q V ++E G + L+ +S+ E ++ Sbjct: 7 LKKLREKNSLTQEQMAKRVMVTRQAVSRWETGETQPNTDTLKLLSQEFEVSVN 59 >gi|126730415|ref|ZP_01746226.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126709148|gb|EBA08203.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 188 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 33/71 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ ++L + LG + + + E+ ++ + L+H++ L+ +S Sbjct: 10 LGSDLRTLRRTRGLTLQQLADKLGRSVGWLSQVERDLSEPSITDLRHLAAALDVSVSMLA 69 Query: 75 DVSPTVCSDIS 85 ++ Sbjct: 70 RQDAAAPEEVG 80 >gi|103486182|ref|YP_615743.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976259|gb|ABF52410.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 63 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R SQ+ L + L ++ Q V E G I+++ PI F Sbjct: 3 NRLKVLRAERDWSQQDLADRLEVSRQSVNAIETGKYDPSLPLAFRIADLFGLPIEAIF 60 >gi|134100678|ref|YP_001106339.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291006518|ref|ZP_06564491.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|37595051|gb|AAQ94242.1| helix-turn-helix regulator [Saccharopolyspora erythraea] gi|133913301|emb|CAM03414.1| HTH transcriptional regulator, XRE family, cupin domain [Saccharopolyspora erythraea NRRL 2338] Length = 196 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 23/145 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R + G+S ++ I + + E G L +++VLE P+ Sbjct: 7 VGANLRAVRSVRGLSLSEVARRAAIGKGTLSELEAGQRNPTLETLYALAQVLEVPLGELL 66 Query: 75 DVSPTVCSD-------------ISSEENNVMDFIS----TPDGLQL-NRYFIQIDDVKVR 116 + D + + +MD + + +L R + R Sbjct: 67 VETEAADGDRQVLVRAGGADLSGRTIDVQLMDRTAIGGFRQEIYRLYARAGSRYVSPGHR 126 Query: 117 QKIIE--LVRS---IVSSEKKYRTI 136 +++E LV S + E+ T+ Sbjct: 127 PRVVEQLLVHSGTLVAGPEQDPVTL 151 >gi|83719318|ref|YP_441974.1| DNA-binding protein [Burkholderia thailandensis E264] gi|257138149|ref|ZP_05586411.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83653143|gb|ABC37206.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 192 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 33/82 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGVS 61 Query: 70 ISFFFDVSPTVCSDISSEENNV 91 I+ F+ + E V Sbjct: 62 IASLFERDRAASPLSRAAEQPV 83 >gi|56698137|ref|YP_168509.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679874|gb|AAV96540.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++R R G+S K+ E G++ + + E+G + + L I++ + P+S + Sbjct: 9 KLREVRAAAGLSLAKVAELTGVSKAMLGQIERGESSPTIATLWKIAKGFQMPLSAL--LG 66 Query: 78 PTVCSD 83 P D Sbjct: 67 PAALRD 72 >gi|51596125|ref|YP_070316.1| prophage repressor protein [Yersinia pseudotuberculosis IP 32953] gi|51589407|emb|CAH21029.1| putative prophage repressor protein [Yersinia pseudotuberculosis IP 32953] Length = 228 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +R+ RR L +SQE+L G++ + K E G + L +I+ L + Sbjct: 7 ERVSERRSALNLSQEELARKSGVSRVAISKAELGLTKNFNGNTLFNIARALLCNPEWL 64 >gi|86134662|ref|ZP_01053244.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85821525|gb|EAQ42672.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 84 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+I RR LG++Q + E L +T+ K E G ++ RL I + L FF+ Sbjct: 22 KKIVDRRKELGLTQWDISEQLNLTYSGYFKVETGKTKLDVYRLFEILDTLNITPKEFFED 81 >gi|328554201|gb|AEB24693.1| transcriptional regulator SinR [Bacillus amyloliquefaciens TA208] Length = 111 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 62 LDEKHETEYDGQLDSE 77 >gi|312977083|ref|ZP_07788832.1| putative transcriptional regulator [Lactobacillus crispatus CTV-05] gi|310896411|gb|EFQ45476.1| putative transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 278 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ +R R L ++Q+++ + +T K E G +R+ A +L I + I++ Sbjct: 1 MTIGQALRKIRQNLDLTQKEMAANI-VTRPFYAKVEAGKSRISADKLAAILFEHDVDITY 59 Query: 73 FFDV 76 F+ + Sbjct: 60 FYQL 63 >gi|260868457|ref|YP_003234859.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257764813|dbj|BAI36308.1| predicted transcriptional regulator [Escherichia coli O111:H- str. 11128] Length = 233 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R LG+++ L + + +E G+ V A + ++ L + + Sbjct: 163 IGARIKSARTKLGLTESDLARMIHTYSDPINDWECGICEVPADHIVPLASALNCDLMWLL 222 Query: 75 DVSPTVCSD 83 Sbjct: 223 TGKSEAKEQ 231 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 6/91 (6%) Query: 2 VGNKKIPNPVDINVGKRI---RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + + K + + G +I R +R G++ +L L + + + ++E G S Sbjct: 69 IASTKQQHSI--RSGNKIACIRTKREACGLTTTELARLLDLDEEIILQWESGEFEPTISM 126 Query: 59 LQHISEVLES-PISFFFDVSPTVCSDISSEE 88 L ++ VL P+S + + +++ E Sbjct: 127 LIPLANVLGCDPLSLLSEKNSESAIRVNTTE 157 >gi|257440012|ref|ZP_05615767.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197364|gb|EEU95648.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 65 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R M+Q L E G++ Q + EKG + + I ++L + F Sbjct: 6 KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILGKTLDELF 62 >gi|227550339|ref|ZP_03980388.1| Cro/CI family phage transcriptional regulator [Enterococcus faecium TX1330] gi|257886430|ref|ZP_05666083.1| phage transcriptional regulator [Enterococcus faecium 1,231,501] gi|257900261|ref|ZP_05679914.1| phage transcriptional regulator [Enterococcus faecium Com15] gi|227180541|gb|EEI61513.1| Cro/CI family phage transcriptional regulator [Enterococcus faecium TX1330] gi|257822286|gb|EEV49416.1| phage transcriptional regulator [Enterococcus faecium 1,231,501] gi|257838173|gb|EEV63247.1| phage transcriptional regulator [Enterococcus faecium Com15] Length = 78 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R+ G + ++ + + FQ + KYE + + S L+ +S + + PI+ FF Sbjct: 3 LKAARVNAGFTSKEAAKAADVHFQTLSKYEIDSSDIPFSLLKELSNLYQVPINNFF 58 >gi|220920643|ref|YP_002495944.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945249|gb|ACL55641.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 138 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R G++Q++L + G+ + + E R A +++ L +++ +++ Sbjct: 80 LRAIRKHKGLTQQQLQDATGLPQSYISEIESSTKRASAEAKAKLAQALGCDVAWLEEIN 138 >gi|116514659|ref|YP_813565.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093974|gb|ABJ59127.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 116 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ ++ R LG+SQ+++ ++ Q + E G R+ A L I + F Sbjct: 7 VGELLKRIRSDLGLSQKQMAGMT-MSVTQYSRIESGDQRIIADDLFEILTAQQVSARCFV 65 Query: 75 DVSPTVCSDISSEENNVM 92 D + +++ +V+ Sbjct: 66 DAMTNFDFERAADFTDVL 83 >gi|110677608|ref|YP_680615.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453724|gb|ABG29929.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 187 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 7 IPNPVDINVGK---RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + D +G+ R++ R + G+S + + + G++ V + E+G + S L +++ Sbjct: 1 MADDRDDILGQLPARLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLT 60 Query: 64 EVLESPISFFFDVSPTVC 81 L+ + DV+ T Sbjct: 61 RALQVDFAGLLDVASTQS 78 >gi|15672309|ref|NP_266483.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|116511183|ref|YP_808399.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|281490873|ref|YP_003352853.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12723193|gb|AAK04425.1|AE006269_10 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|116106837|gb|ABJ71977.1| Predicted transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|281374631|gb|ADA64151.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] gi|300069966|gb|ADJ59366.1| Transcriptional regulator, Cro/CI family protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326405905|gb|ADZ62976.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 97 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R + +SQE + ++ Q + E + ++E L + + F+ Sbjct: 3 NKIRELRRLSHLSQEDVAHIAHVSRQTINAIENDKYDPELTLAFKLAETLGTTVDELFNY 62 Query: 77 SPTV 80 PTV Sbjct: 63 QPTV 66 >gi|328956456|ref|YP_004373842.1| transcriptional regulator [Carnobacterium sp. 17-4] gi|328672780|gb|AEB28826.1| transcriptional regulator [Carnobacterium sp. 17-4] Length = 65 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R +SQ++L + + +T Q + E+G + + I + L+ ++ F Sbjct: 6 RLKAARAKNDLSQQQLADAVNVTRQTISAIERGDYNPTINLCREICKKLDLTLNDLF 62 >gi|325687904|gb|EGD29924.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 94 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK+++ R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENNKTILDSASLIRLADFYQISLD 58 >gi|296161065|ref|ZP_06843876.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295888764|gb|EFG68571.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 108 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G+++R R ++ EKL + G++ + + E + R A +L +++ L S+F Sbjct: 5 LGEKLRELRKERELTLEKLADLAGLSKSYLWELENRESQRPSAEKLTALADALGVAASYF 64 Query: 74 FDVSPTVCSDISSEENNVMDFIS-TPDGLQLNR 105 + + +E + P+ + R Sbjct: 65 LEEDVRAPEERHLDEAFFRGYQRLEPEAKEQLR 97 >gi|259909529|ref|YP_002649885.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] gi|224965151|emb|CAX56683.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] Length = 136 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ R +Q+++ +G+ Q KYE G++ A +L ++E+ + I + Sbjct: 19 GKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELFTTTIDYL 76 >gi|192359942|ref|YP_001982170.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] gi|190686107|gb|ACE83785.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] Length = 201 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 2 VGNKKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + IP +D + +G++++ R +SQ +L + GIT + E+G L Sbjct: 4 ANDTVIPPSLDSHMDLGRKLKAIREAHNLSQRELAKRAGITNSSISMIEQGQVSPSVQSL 63 Query: 60 QHISEVLESPISFFF 74 + I ++ FF Sbjct: 64 ERILTAFPLSLAEFF 78 >gi|126090267|ref|YP_001041722.1| putative phage repressor [Shewanella baltica OS155] gi|125999898|gb|ABN63967.1| putative phage repressor [Shewanella baltica OS155] Length = 213 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ RR + G++QE LG +G++ V +E G N + L ++ VL + Sbjct: 4 IGHRIKTRRKLKGLTQEALGLAVGVSKVSVSSWELGKNSMHPELLNKVAGVLGVDAHWLL 63 Query: 75 DVSP 78 Sbjct: 64 TGES 67 >gi|291523885|emb|CBK89472.1| Helix-turn-helix [Eubacterium rectale DSM 17629] Length = 77 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNR-VGASRLQHISE 64 N D+ +G I+ R ++Q +L E I+ + K E G ++ + S L I+ Sbjct: 5 NDADLYRVIGANIKHYRAQAKLTQVQLAEQTKISLSYLSKIEAAGCDKSLSISVLNQIAN 64 Query: 65 VLESPISFFF 74 VL I+ FF Sbjct: 65 VLSVEINEFF 74 >gi|291445816|ref|ZP_06585206.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291348763|gb|EFE75667.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 205 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L Sbjct: 46 NLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 105 Query: 74 F 74 + Sbjct: 106 Y 106 >gi|316935988|ref|YP_004110970.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315603702|gb|ADU46237.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 420 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLES 68 R+ G+SQ++L + L + QQ+Q+YEK + SR Q I VL+ Sbjct: 87 RIAKGLSQKQLADLLEMKEQQIQRYEKEKYAGISLSRYQDILSVLDI 133 >gi|229070932|ref|ZP_04204159.1| hypothetical protein bcere0025_31060 [Bacillus cereus F65185] gi|228712114|gb|EEL64062.1| hypothetical protein bcere0025_31060 [Bacillus cereus F65185] Length = 65 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I++ R +SQ++L + +G+T Q + EK IS+VL+ I F+ Sbjct: 4 NNIKMYRAAKNISQDQLAKIVGVTRQTISAVEKNKYSPTLELAFKISKVLDRTIEEVFE 62 >gi|227549873|ref|ZP_03979922.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078128|gb|EEI16091.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 71 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R L MSQ +L E G++ Q + EKG I L + F Sbjct: 9 VRRWRRWLDMSQAELAEAAGVSRQTIANIEKGNYSPSVHLALRICRTLGKTVEQVF 64 >gi|126740274|ref|ZP_01755963.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126718729|gb|EBA15442.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 231 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L + G++ + K E G + LQ ++ L P+ Sbjct: 43 LEVAIGREVRAFRRQKEITVAELAQITGLSIGMLSKIENGNTSPSLTTLQILANALSVPL 102 Query: 71 S 71 + Sbjct: 103 T 103 >gi|92113766|ref|YP_573694.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796856|gb|ABE58995.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 186 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 7/114 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ ++ R G S ++ G++ + + E+G + + L I+ S Sbjct: 6 AHIAATLKTLRGAQGWSLDRAARATGVSKAMLGQIERGESSPTVATLWKIAGGFRVSFSL 65 Query: 73 FFDVSPTVCSDISSEENN-VMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELV 123 FF+ + + E V++ + + F D ++R + +IEL Sbjct: 66 FFEQASVQGIVPNGEAAPTVLEDAAAGMTVTPLFAF----DPRLRFEMFLIELA 115 >gi|15678985|ref|NP_276102.1| hypothetical protein MTH967 [Methanothermobacter thermautotrophicus str. Delta H] gi|24418730|sp|O27048|Y967_METTH RecName: Full=Putative HTH-type transcriptional regulatory protein MTH_967 gi|2622065|gb|AAB85463.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 311 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 13 INV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ GK +R R +S + L + ++ + + KYE G+ R A + E+L I+ Sbjct: 127 VHIDGKTLREVREEYNLSLKDLADLAHVSRKTIYKYENGLARASAETAMILEEILNIRIT 186 Query: 72 FFFDVSPTVCSD 83 D+ D Sbjct: 187 LSIDIFSVPDRD 198 >gi|145628649|ref|ZP_01784449.1| hypothetical protein CGSHi22121_06525 [Haemophilus influenzae 22.1-21] gi|145632552|ref|ZP_01788286.1| hypothetical protein CGSHi3655_02019 [Haemophilus influenzae 3655] gi|145638786|ref|ZP_01794395.1| hypothetical protein CGSHiII_08726 [Haemophilus influenzae PittII] gi|144979119|gb|EDJ88805.1| hypothetical protein CGSHi22121_06525 [Haemophilus influenzae 22.1-21] gi|144986747|gb|EDJ93299.1| hypothetical protein CGSHi3655_02019 [Haemophilus influenzae 3655] gi|145272381|gb|EDK12289.1| hypothetical protein CGSHiII_08726 [Haemophilus influenzae PittII] gi|309750276|gb|ADO80260.1| Putative transcriptional regulator [Haemophilus influenzae R2866] Length = 140 Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 33/58 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +NV ++IR R SQE++ E + ++ K E+G ++ +L+ I+++L+ I Sbjct: 1 MNVHEKIRKLRETKHWSQEEMAERMSMSLNGYAKIERGETKLHLDKLEQIAQILDIDI 58 >gi|332886394|gb|EGK06638.1| hypothetical protein HMPREF9456_00512 [Dysgonomonas mossii DSM 22836] Length = 135 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 11/131 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R ++Q+ L E +G++ + YEK +++ L+ I++VL+ P+ + Sbjct: 12 GPNVRRWREWRNINQDVLAEQIGVSQATLSSYEK-KDKLEQDILEKIAKVLDIPVEAITE 70 Query: 76 VSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + +I S ++N + T + L D K I L ++ +++ Sbjct: 71 LEQGTSINIYSGTWQDNAITNQYTFNPLDKIVELY---DEK-----IALYERMLKDKEEA 122 Query: 134 RTIEEECMVEQ 144 ++ E + E+ Sbjct: 123 ISLLHEVLKER 133 >gi|325283943|ref|YP_004256484.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] gi|324315752|gb|ADY26867.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] Length = 90 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ + R G+S++ L + + +Q + E+G +SE PI F Sbjct: 16 NRLPVLRAERGLSRQDLAAAIAVNYQTIGYLERGEYAPSLDLAFRLSEFFGLPIEAIFSR 75 Query: 77 SP 78 +P Sbjct: 76 TP 77 >gi|15674279|ref|NP_268452.1| hypothetical protein SPy_0037 [Streptococcus pyogenes M1 GAS] gi|19745232|ref|NP_606368.1| hypothetical protein spyM18_0038 [Streptococcus pyogenes MGAS8232] gi|50913429|ref|YP_059401.1| transcriptional regulator [Streptococcus pyogenes MGAS10394] gi|71902700|ref|YP_279503.1| transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71909848|ref|YP_281398.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|94987666|ref|YP_595767.1| transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94991533|ref|YP_599632.1| transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|306828270|ref|ZP_07461529.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|13621358|gb|AAK33174.1| hypothetical protein SPy_0037 [Streptococcus pyogenes M1 GAS] gi|19747325|gb|AAL96867.1| hypothetical protein spyM18_0038 [Streptococcus pyogenes MGAS8232] gi|50902503|gb|AAT86218.1| Transcriptional regulator [Streptococcus pyogenes MGAS10394] gi|71801795|gb|AAX71148.1| transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71852630|gb|AAZ50653.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|94541174|gb|ABF31223.1| transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94545041|gb|ABF35088.1| Transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|304429543|gb|EFM32593.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 303 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++++ R+ +S+E L G+ ++ +Q+ + E G + S++ I++ L + + Sbjct: 4 HFGGKVKVLRLEKRISREDLCGDESELSVRQLARIELGQSIPSLSKVIFIAKALNVSVGY 63 Query: 73 FFDVSP 78 D + Sbjct: 64 LTDGAD 69 >gi|81427764|ref|YP_394763.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609405|emb|CAI54451.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 68 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 23/64 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI++ R +Q L E GI+ Q V EK I++V I+ F Sbjct: 4 NRIKVLRAERNWTQADLAERTGISRQAVISIEKYKYTPSLELAFKIAQVFGVEITTVFSP 63 Query: 77 SPTV 80 Sbjct: 64 EEDS 67 >gi|154248642|ref|YP_001419600.1| hypothetical protein Xaut_4724 [Xanthobacter autotrophicus Py2] gi|154162727|gb|ABS69943.1| protein of unknown function DUF955 [Xanthobacter autotrophicus Py2] Length = 474 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G +R R LG+ Q +L + L ++ + + E + AS L IS I+ Sbjct: 5 IYAGHAVRRLREKLGLKQSELAQRLAVSPSYINQIESNQRPLTASILIAISRTFAVDITS 64 Query: 73 F-FDVSPTVCSDISSEENNVM 92 F + + +D+ + + Sbjct: 65 FGAEDLDRLVADLRETAADPL 85 >gi|331090730|ref|ZP_08339577.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399838|gb|EGG79497.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium 2_1_46FAA] Length = 156 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G I R G++Q +L E LG++ + + ++E S + + E L+ ++ Sbjct: 6 IGDFISCCRKEKGLTQVELAEMLGVSDKSISRWENAKTMPDISLYEPLCEALDIQVA 62 >gi|327398988|ref|YP_004339857.1| helix-turn-helix domain-containing protein [Hippea maritima DSM 10411] gi|327181617|gb|AEA33798.1| helix-turn-helix domain protein [Hippea maritima DSM 10411] Length = 72 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPI 70 +GK+I+ R LG+SQ++L + + + K E GV + + I++ L I Sbjct: 9 LGKKIKKLRTGLGLSQDELARKADVPYTTLTKIETGVIKKPSVYVVAKIAKALNITI 65 >gi|322388988|ref|ZP_08062558.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321144293|gb|EFX39701.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 247 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ K+++ RR+ G++Q + E L I+ + +E G+ L+ +++ L Sbjct: 22 DMFDAKKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKED 81 Query: 72 FFFDVSPT 79 +F + Sbjct: 82 YFINKDSA 89 >gi|288923632|ref|ZP_06417738.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288345013|gb|EFC79436.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 284 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG IR +R +S +L G++ + + E+G+ R A LQ I++ L Sbjct: 7 KDVGDFIREQRHGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEV 66 Query: 73 FFDVSPTVCSDISSEE 88 + + + E+ Sbjct: 67 LYVQAGILEEREGGED 82 >gi|257867132|ref|ZP_05646785.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873466|ref|ZP_05653119.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257801188|gb|EEV30118.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807630|gb|EEV36452.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 191 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+ K+I+ R L +SQE L E L ++ Q + +E + L +S + + + Sbjct: 1 MNLSKQIKKHRERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSLD 59 >gi|223985090|ref|ZP_03635186.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM 12042] gi|223962912|gb|EEF67328.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM 12042] Length = 136 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R GM+Q +L + +T + V K+E+ ++ L ++E+LE + Sbjct: 9 GMVIASLRKAQGMTQAELAAKMQVTDKAVSKWERDLSCPDIQSLPRLAEILEVSVEELMQ 68 Query: 76 VSPTVCSDI 84 S + Sbjct: 69 GETRPASSV 77 >gi|196042506|ref|ZP_03109747.1| transcriptional regulator [Bacillus cereus NVH0597-99] gi|196026663|gb|EDX65329.1| transcriptional regulator [Bacillus cereus NVH0597-99] Length = 115 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTS 59 >gi|163869336|ref|YP_001610592.1| hypothetical protein Btr_2646 [Bartonella tribocorum CIP 105476] gi|161019039|emb|CAK02597.1| hypothetical protein BT_2646 [Bartonella tribocorum CIP 105476] Length = 176 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 21/153 (13%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQ-EKLGECLGITFQQVQKYEKGVNRVGASRL 59 M ++K P + KR+ R+ LG +Q ++ + L + + YE G+ +S L Sbjct: 1 MARSEKEPK---TELAKRLCEVRLALGFTQRKQFADHLVVPESTMYNYETGLREPPSSML 57 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ--LNR-YFIQIDDVKVR 116 + +++ + SD++ + + PDGL L R +I D K++ Sbjct: 58 IIYKNICGIDVNWLLTGEGEMFSDMAKAKAVGFKMPTIPDGLMKKLGRIAYITYRDAKIK 117 Query: 117 --------------QKIIELVRSIVSSEKKYRT 135 +K+ ELV+ I E+ T Sbjct: 118 LPPEDIAELAAELYKKLQELVQDINDMEEVEAT 150 >gi|257417719|ref|ZP_05594713.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|45827617|gb|AAS78452.1| BcrR [Enterococcus faecalis] gi|257159547|gb|EEU89507.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 204 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNMESLKCISKFFSVTID 59 >gi|86739017|ref|YP_479417.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86565879|gb|ABD09688.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 167 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA--SRL 59 +G +P DI G RI R +SQE+L G++ ++K E+ R GA L Sbjct: 80 IGGDGMP---DIMPGDRIAQIRRRRSLSQEELAARSGVSVAVIRKLEQNR-RAGARIETL 135 Query: 60 QHISEVLESPISFFFDVSPTVC 81 ++ L S FD +V Sbjct: 136 HALARGLNVKTSELFDNGESVA 157 >gi|70725716|ref|YP_252630.1| hypothetical protein SH0715 [Staphylococcus haemolyticus JCSC1435] gi|68446440|dbj|BAE04024.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 65 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R + +SQ +L +G++ Q + E +I++ L ++ F Sbjct: 2 NKVKVYRGVKKISQLELARSVGVSRQTINMIENDKYNPSLKLCINIAKTLGVTLNDLF 59 >gi|53714235|ref|YP_100227.1| hypothetical protein BF2945 [Bacteroides fragilis YCH46] gi|253564751|ref|ZP_04842207.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265766272|ref|ZP_06094313.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52217100|dbj|BAD49693.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|251946216|gb|EES86593.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263253940|gb|EEZ25405.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 104 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%) Query: 12 DIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D++ +G+ I+ R ++QE+LG +G+ Q+ + E G N IS V + Sbjct: 31 DLHSFLIGEAIKQARQSKNLTQEELGNLIGVQRAQISRIENGKN----LTFSTISRVFK 85 >gi|51594600|ref|YP_068791.1| hypothetical protein YPTB0245 [Yersinia pseudotuberculosis IP 32953] gi|170026166|ref|YP_001722671.1| hypothetical protein YPK_3955 [Yersinia pseudotuberculosis YPIII] gi|186893601|ref|YP_001870713.1| hypothetical protein YPTS_0261 [Yersinia pseudotuberculosis PB1/+] gi|51587882|emb|CAH19485.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|169752700|gb|ACA70218.1| protein of unknown function DUF955 [Yersinia pseudotuberculosis YPIII] gi|186696627|gb|ACC87256.1| protein of unknown function DUF955 [Yersinia pseudotuberculosis PB1/+] Length = 400 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+ R G+S+ LG + + + K+E G + A L + +VL P+S+F Sbjct: 11 ERLTQMREARGLSKINLGRLVERSPSTITKWENGSHSPDAEGLASLGKVLNCPVSWF 67 >gi|150015772|ref|YP_001308026.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902237|gb|ABR33070.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 113 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ ++Q +L + L + V KYE G LQ I++ E I + + Sbjct: 7 RLKEERIQKNLTQTELAKTLYLGQTSVSKYESGKQIPEMPTLQKIADFFEISIDYL--LG 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQL 103 T + + + N + S D +L Sbjct: 65 KTDIRNYTDDPNITIALHSDTDYDEL 90 >gi|332878558|ref|ZP_08446278.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683459|gb|EGJ56336.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 119 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +I+ R + +SQ+ + LGI+ + K E G ++ SRL I +LE Sbjct: 8 KIKQAREVKRISQDFVATKLGISTRAYSKIETGETQLTISRLNEICTILEVDP 60 >gi|307250892|ref|ZP_07532820.1| Helix-turn-helix domain protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857142|gb|EFM89270.1| Helix-turn-helix domain protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 134 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +N+ ++IR R SQE++ E L ++ K E+G ++ +L+ I+++L+ + Sbjct: 1 MNINEKIRRIRESKEWSQEQMAEKLNMSLNGYAKIERGETKLYLDKLEQIAQILDIDV 58 >gi|298674042|ref|YP_003725792.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] gi|298287030|gb|ADI72996.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] Length = 328 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES------P 69 G +R RM + MS + LG++ + + KYE+G + E+ + Sbjct: 129 GDVLREARMSVSMSIGTIASQLGVSRRTISKYEEGGMDASIDIALQLEELFDVALAKSID 188 Query: 70 ISFFFD-----VSPTVCSDISSEENNVMDFIST 97 + FFD + E+N+++ IST Sbjct: 189 VLEFFDNKLQEDEENNEYETKPPEDNILNLIST 221 >gi|56424516|gb|AAV91189.1| repressor [Vibrio cholerae] gi|56424526|gb|AAV91194.1| repressor [Vibrio cholerae] Length = 85 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R+ ++QE++ +G+ YEKG ++ +++ PI+ Sbjct: 4 SKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAELVSD 63 Query: 77 SPTVCSDISSEENNVMDFISTP 98 S T + + +++ + P Sbjct: 64 SETNIDEKLKSKIRMIESLDEP 85 >gi|68248909|ref|YP_248021.1| hypothetical protein NTHI0420 [Haemophilus influenzae 86-028NP] gi|68057108|gb|AAX87361.1| hypothetical protein NTHI0420 [Haemophilus influenzae 86-028NP] Length = 144 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +NV ++IR R SQE++ E + ++ K E+G ++ +L+ I+++L+ I Sbjct: 3 IRMNVHEKIRKLRETKHWSQEEMAERMSMSLNGYAKIERGETKLHLDKLEQIAQILDIDI 62 >gi|103485648|ref|YP_615209.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98975725|gb|ABF51876.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 93 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V R+R R G SQ +L LG++ Q + E ++ + + F Sbjct: 26 VENRVREYREAAGWSQGELARRLGVSRQTINAVETDKYDPSLPLALRMARLFALEVCELF 85 >gi|322516931|ref|ZP_08069826.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124508|gb|EFX95995.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 108 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KRIR+ R+ GM+QE L E + V K E + L+ I + L+ I F Sbjct: 7 YISKRIRVLRIKEGMTQEMLEEKAELGTNYVYKIENLEPNIKIKTLEKIMKALDVDIPTF 66 Query: 74 FDV 76 FDV Sbjct: 67 FDV 69 >gi|315122910|ref|YP_004063399.1| hypothetical protein CKC_05830 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496312|gb|ADR52911.1| hypothetical protein CKC_05830 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 251 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI NP +G R++ R+ +G++Q++ G +G++ V E G I Sbjct: 87 KKIFNPH--AIGARLKAIRLKMGLTQKEFGLLIGLSSVGVGNIENGHRTPEIKTALKIKR 144 Query: 65 VLESPISFFF 74 L + + + Sbjct: 145 ALNKTLDWIY 154 Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R R R G Q +L G V ++E G+ + + + + Sbjct: 12 KEIGQRFRALRKQHGFDQTELVSMSG-RRGNVARFEAGLAPASTNYALFLRNTFGASFDW 70 Query: 73 FFDVSPTVCSDISSEENNVMD 93 +D + S+ E + + Sbjct: 71 LYDGVENLRSERDRTEKKIFN 91 >gi|304405777|ref|ZP_07387435.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304345020|gb|EFM10856.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 71 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +RIR R + G +Q++L E L ++ + E+G + L +I+E L Sbjct: 8 QRIRAFRKLKGFTQQQLAERLSVSVAVLGSLERGTRKPDPKLLANIAETLGID 60 >gi|291541946|emb|CBL15056.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 64 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R +SQ++L E + ++ Q + EKG + I + L+ + F Sbjct: 5 RLKSARAAKDLSQQQLAELVKVSRQTISAIEKGDYNPTINLCIAICKALDKTLDELF 61 >gi|265766758|ref|ZP_06094587.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253135|gb|EEZ24611.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301164348|emb|CBW23906.1| putative DNA-binding protein [Bacteroides fragilis 638R] Length = 152 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+++ G IR R+ + Q+ L + +T V KYEK + + L + L P+ Sbjct: 10 VNVHHGHNIRRTRIEKNIKQDALAALVNMTQPNVSKYEK-MRVIEDEMLNRFARALNVPV 68 Query: 71 SFF 73 + Sbjct: 69 EYL 71 >gi|239932598|ref|ZP_04689551.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291440960|ref|ZP_06580350.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291343855|gb|EFE70811.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 190 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 25/75 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +R R G + + L G++ + + E+ + I + L I+ D Sbjct: 13 RNVRRWRTERGFTLDALAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSITTLLDY 72 Query: 77 SPTVCSDISSEENNV 91 I + V Sbjct: 73 ERGPKVRIVPADRAV 87 >gi|227878082|ref|ZP_03996069.1| XRE family transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256843792|ref|ZP_05549279.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256849648|ref|ZP_05555080.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047765|ref|ZP_06020717.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|293381646|ref|ZP_06627628.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|227862320|gb|EEJ69852.1| XRE family transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256613697|gb|EEU18899.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256713764|gb|EEU28753.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260571970|gb|EEX28538.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|290921788|gb|EFD98808.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] Length = 278 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ +R R L ++Q+++ + +T K E G +R+ A +L I + I++ Sbjct: 1 MTIGQALRKIRQNLDLTQKEMAANI-VTRPFYAKVEAGKSRISADKLAAILFEHDVDITY 59 Query: 73 FFDV 76 F+ + Sbjct: 60 FYQL 63 >gi|227507935|ref|ZP_03937984.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192599|gb|EEI72666.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 212 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ ++I+ R ++Q+ L + L ++ + + +E G + +S++ + Sbjct: 6 MSISEKIKQCRKQKNLTQKDLADELHLSRKTISGWENGRGYPDIKSITQLSDIFGISV 63 >gi|291326750|ref|ZP_06125688.2| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313121|gb|EFE53574.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 118 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP-IS 71 +VG +R R+ ++ +L + L I+ QQV +YE+G + L + VLE + Sbjct: 19 RDVGLFLRQARIDKSLTGYQLAKILKISQQQVSRYERGETGINVEVLNTLLGVLERNWLE 78 Query: 72 FFFDVSPTVCSDISS 86 FFF V ++I+ Sbjct: 79 FFFKVLVNHSNEIAD 93 >gi|209558618|ref|YP_002285090.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] gi|209539819|gb|ACI60395.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] Length = 306 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++++ R+ +S+E L G+ ++ +Q+ + E G + S++ I++ L + + Sbjct: 4 HFGGKVKVLRLEKRISREDLCGDESELSVRQLARIELGQSIPSLSKVIFIAKALNVSVGY 63 Query: 73 FFDVSP 78 D + Sbjct: 64 LTDGAD 69 >gi|194017128|ref|ZP_03055740.1| HTH-type transcriptional regulator PuuR [Bacillus pumilus ATCC 7061] gi|194010996|gb|EDW20566.1| HTH-type transcriptional regulator PuuR [Bacillus pumilus ATCC 7061] Length = 67 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+N + + ++ +R G+SQE E LG T + + E G L ISE + Sbjct: 2 IDLNELARMLKQKRKESGLSQEDFAEKLGFTGSYISRLENGKVSPTFKSLVQISEHVGIK 61 Query: 70 ISFFF 74 FF Sbjct: 62 AKLFF 66 >gi|167757785|ref|ZP_02429912.1| hypothetical protein CLOSCI_00116 [Clostridium scindens ATCC 35704] gi|167769821|ref|ZP_02441874.1| hypothetical protein ANACOL_01155 [Anaerotruncus colihominis DSM 17241] gi|167664667|gb|EDS08797.1| hypothetical protein CLOSCI_00116 [Clostridium scindens ATCC 35704] gi|167668182|gb|EDS12312.1| hypothetical protein ANACOL_01155 [Anaerotruncus colihominis DSM 17241] Length = 129 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 M+QE+L L +T Q + +E+ VN + L+ I + + F Sbjct: 1 MTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMDDF 46 >gi|117621486|ref|YP_857504.1| DNA-binding transcriptional repressor PuuR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562893|gb|ABK39841.1| transcriptional regulator, Cro/CI family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 203 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N V ++G+R+ R LG+SQ ++ E G+T + E+ + LQ Sbjct: 13 MTDNPMTDKGVAQSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASLQ 72 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 + V E P+S FF + + +++ Sbjct: 73 KLLSVYELPLSRFFAEEEGGTPSVVIKAEQLIEL 106 >gi|86739596|ref|YP_479996.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566458|gb|ABD10267.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 116 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 21/52 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +R R G SQ L E LG+T + E G + ++E L Sbjct: 12 QSVRKHRRQRGWSQAALAERLGLTRTTITNIEHGAQGITLLTFVRLAEQLNV 63 >gi|32472902|ref|NP_865896.1| hypothetical protein RB4097 [Rhodopirellula baltica SH 1] gi|32444139|emb|CAD73582.1| similar to ymc [Rhodopirellula baltica SH 1] Length = 733 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D G RI+ R+ ++Q +L + + ++ V K+E G S+ + I VLE Sbjct: 180 DFPTGPRIKELRLREKLTQAQLADLIAVSPATVSKWETGKQIAPQSQARKICAVLE 235 >gi|85710340|ref|ZP_01041405.1| predicted transcription regulator, containing DNA-binding HTH domain [Erythrobacter sp. NAP1] gi|85689050|gb|EAQ29054.1| predicted transcription regulator, containing DNA-binding HTH domain [Erythrobacter sp. NAP1] Length = 66 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q L L ++ Q + E ++ + P+ F Sbjct: 5 LRDLRKGRGLNQADLANTLEVSRQTIIAIEADKYDPSLPMAYRLAAFFDVPVEELF 60 >gi|332666442|ref|YP_004449230.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335256|gb|AEE52357.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 190 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++IR R GM+ +++ + IT + + E L +IS L P++ Sbjct: 9 VGRKIRQLRKERGMNLQEVSDKSDITAGLLSRIENFRTLPSLPVLHNISMALNVPLAELV 68 Query: 75 DV 76 D+ Sbjct: 69 DL 70 >gi|303242387|ref|ZP_07328871.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590065|gb|EFL59829.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 147 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--FDVS 77 + R + G+SQE++ E + I+ Q K+EKG + ++E + + FD + Sbjct: 8 MLRTMNGLSQEQIAEKIDISRQAYGKWEKGETIPDVEKCALLAEFYGTTVDSLLHFDTN 66 >gi|300777929|ref|ZP_07087787.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503439|gb|EFK34579.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 262 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R +SQ+ + + L I+ + KYE G++ L IS+ I Sbjct: 6 NNIRFLRARRKLSQQNVADELMISRVRYSKYENGISEPPIELLVKISKYFHVSID 60 >gi|295107152|emb|CBL04695.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 195 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 32/84 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G+SQ+ L + ++ Q V +E L +S + + + Sbjct: 1 MELGSQIKRHRTERGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + + M +++ Sbjct: 61 LIKGDVEAMKEAIENDYRKMIYLA 84 >gi|296102579|ref|YP_003612725.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057038|gb|ADF61776.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 185 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R LG+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 76 VSPTVCS 82 Sbjct: 69 EPEKPDE 75 >gi|268589265|ref|ZP_06123486.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291315283|gb|EFE55736.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 76 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + N+G+ IR R+ +S ++ + L IT +YE G + A L IS++ Sbjct: 2 KKTTQRNKNLGEYIRNIRVNKKISTHEMADSLNITDSHYNEYESGNASIYADHLIIISKI 61 Query: 66 LESPISFFFDV 76 I+ F +V Sbjct: 62 FNIHINVFLNV 72 >gi|300779089|ref|ZP_07088947.1| cro/CI family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504599|gb|EFK35739.1| cro/CI family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 102 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I++ R+ +SQ +LG L I+ V + E+G+ + + L+ I F Sbjct: 12 QIGKLIQVYRLRKELSQFQLGLELNISKDHVGRIERGLTNPTIENIVKLCNFLDINILFL 71 Query: 74 F 74 F Sbjct: 72 F 72 >gi|255657090|ref|ZP_05402499.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296452077|ref|ZP_06893788.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296879529|ref|ZP_06903511.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|296259027|gb|EFH05911.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296429467|gb|EFH15332.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 70 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +I+ R M+Q +L + +G+ + + E G I++V ++ + F+ Sbjct: 8 KIKEYREKFLMTQNELAKLVGVRRETIVHLENGKYNPSLKLAMDIAKVFDTTVENLFE 65 >gi|218663764|ref|ZP_03519694.1| hypothetical protein RetlI_33177 [Rhizobium etli IE4771] Length = 151 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFFFDVS 77 ++ R G+S+ + LG++ +YE+ +++ +R+ H+ E+L PI F+ + Sbjct: 50 LKKTREAQGLSRADIAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFMPIDMIFEAA 109 Query: 78 PTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVR 116 P + + + S P R + + R Sbjct: 110 PHLWGPHIRGSRGLSNIGSDSKKPSERHDARSYSALAANDPR 151 >gi|161508087|ref|YP_001578054.1| hypothetical protein lhv_1911 [Lactobacillus helveticus DPC 4571] gi|160349076|gb|ABX27750.1| hypothetical protein lhv_1911 [Lactobacillus helveticus DPC 4571] Length = 289 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R+ G++Q++ + + ++ K EK +R+ A L I E P+ Sbjct: 8 MTIGELLKEERIKKGLTQKQFADSI-VSVSYYSKVEKNEHRITAEDLITILEHNNIPLCS 66 Query: 73 FF 74 FF Sbjct: 67 FF 68 >gi|329928143|ref|ZP_08282089.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|328938020|gb|EGG34419.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 185 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+++ + ++L R +S +K+ E GI+ + + E+G + + + I+ L+ Sbjct: 3 PINLILANNLKLLREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLS 62 Query: 70 ISFFFDVSPTVCSDISSEE 88 S + + +S EE Sbjct: 63 FSSLINEPHSGTVVVSREE 81 >gi|325298403|ref|YP_004258320.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317956|gb|ADY35847.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 120 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+ +R RR LG++Q++L E +G + + EKG + S I+ L Sbjct: 59 GEVLRDRRKALGITQKELAERIGRDRSYISRLEKGETDLQLSSFIRIATALGI 111 >gi|91784379|ref|YP_559585.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia xenovorans LB400] gi|91688333|gb|ABE31533.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia xenovorans LB400] Length = 327 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 17/131 (12%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 29 GEREERDPFLTAMGERVRLLRARRGMTRKTLATETGLSERHLANLESGVGNASVLVLRQI 88 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY-------FIQIDD 112 + L ++ V D ++ + + + D L R F Q Sbjct: 89 AATLNCSLA-------EVIGDETTASAEWLLIRELLHGRDQAALQRARMALAEMFAQAPR 141 Query: 113 VKVRQKIIELV 123 R+ I L+ Sbjct: 142 DPHRKDRIALI 152 >gi|146301390|ref|YP_001195981.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155808|gb|ABQ06662.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 138 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++G++I R + M QE L + +G Q V E + +L +++ L + Sbjct: 9 HMGRKISRIRELKDMKQEALAQAMGTNQQTVSILENSE-EIDDEKLAEVAKALGVSV 64 >gi|77461744|ref|YP_351251.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385747|gb|ABA77260.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1] Length = 182 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ + I + N ++D ++L Sbjct: 58 MVEFFSEEILQEKPTQIVYKANELIDISDGAVTMKLV 94 >gi|320101058|ref|YP_004176650.1| XRE family transcriptional regulator [Desulfurococcus mucosus DSM 2162] gi|319753410|gb|ADV65168.1| transcriptional regulator, XRE family [Desulfurococcus mucosus DSM 2162] Length = 294 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP----ISF 72 R+ +R +G+++ +L E LG++ + + YEKG + + ++ V+ I Sbjct: 135 SRLHEKRKEIGLTRGELAEMLGVSRKTIYMYEKGELMISLQKGIELARVIGEDVFDEIDI 194 Query: 73 FFDVSPTVCSDISSEENNVMD 93 F D D EE + D Sbjct: 195 FSDKIEAPALDDIREEPLLSD 215 >gi|296158468|ref|ZP_06841299.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. Ch1-1] gi|295891412|gb|EFG71199.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. Ch1-1] Length = 327 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 17/131 (12%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 29 GEREERDPFLTAMGERVRLLRARRGMTRKTLATETGLSERHLANLESGVGNASVLVLRQI 88 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY-------FIQIDD 112 + L ++ V D ++ + + + D L R F Q Sbjct: 89 AATLNCSLA-------EVIGDETTASAEWLLIRELLHGRDQAALQRARVALAEMFAQAPR 141 Query: 113 VKVRQKIIELV 123 R+ I L+ Sbjct: 142 DPHRKDRIALI 152 >gi|297570524|ref|YP_003691868.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] gi|296926439|gb|ADH87249.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] Length = 105 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +++R R G++Q LG +G+ + + E G + S ++ L+ Sbjct: 7 RKLRAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLD 57 >gi|71903992|ref|YP_280795.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|94990913|ref|YP_599013.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|71803087|gb|AAX72440.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] gi|94544421|gb|ABF34469.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] Length = 128 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ R G++Q++L + + + Q + +EKG ++ ++ V + Sbjct: 20 EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYL 76 >gi|54298316|ref|YP_124685.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris] gi|53752101|emb|CAH13528.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris] Length = 220 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI R LG++ ++L E ++ ++ +E+G G + +++ L ++ Sbjct: 6 QIGNRITKARKELGITIKELAERTAELSPARISNWEQGTRSPGPMEAKLLADQLNVSAAY 65 Query: 73 FFDVSPTVCSDISSEENN---------VMDFISTPDGL 101 ++ D+ N + D I + L Sbjct: 66 LLCLTDNPQGDLIQNPENKFRHIPLLSMKDAIHAKEIL 103 >gi|307320170|ref|ZP_07599590.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306894216|gb|EFN24982.1| putative phage repressor [Sinorhizobium meliloti AK83] Length = 231 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PIS 71 I +G IR R G+ Q + E LGI V +E G N L + L P++ Sbjct: 8 IQIGTAIRTARKRRGLVQRNIAEHLGIDVAAVGMWEGGRNLPSTENLMRAALFLGINPVA 67 >gi|304395275|ref|ZP_07377159.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357528|gb|EFM21891.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 192 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 2/95 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + ++I +G +++ R G S L G++ + K E+G + A L +S Sbjct: 7 SKEDSLNIRIGLKVKDERERRGWSLTDLAGHSGVSRAMIHKIERGESSPTAVLLARLSGS 66 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + IS + + EN + P+ Sbjct: 67 FDMSISQLLAQTEVQTGTLVRHENQPV--WQDPET 99 >gi|297157619|gb|ADI07331.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 104 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+ + RR LG+SQ +L E G+ Q+ + E G L+ ++ L+S ++ Sbjct: 38 LGQMVYDRRTALGLSQTELAERCGMKQPQISRIEGGGTVPTIPLLRRLARALDSDLT 94 >gi|228984873|ref|ZP_04145043.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774823|gb|EEM23219.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 404 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTALAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|229195999|ref|ZP_04322751.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|228587381|gb|EEK45447.1| Transcriptional regulator, Xre [Bacillus cereus m1293] Length = 404 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTALAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|227501064|ref|ZP_03931113.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227216837|gb|EEI82235.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 95 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G++Q LG +G++ Q + E+G ++ V + + F + Sbjct: 31 NKLSEIRKEKGINQTDLGNMVGVSRQTISLIERGDYNPSVMVALSLARVFDMRVEDIFGL 90 Query: 77 SPT 79 Sbjct: 91 EEE 93 >gi|75758481|ref|ZP_00738602.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904936|ref|ZP_04068988.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL 4222] gi|74494008|gb|EAO57103.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228854678|gb|EEM99284.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL 4222] Length = 65 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQEKL E +G++ + + E + I++VL + + F Sbjct: 2 NKIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSVESIF 59 >gi|323174633|gb|EFZ60254.1| repressor protein C2 [Escherichia coli LT-68] Length = 240 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 ++G+R+ R G++Q+ L + G+T + K E+G+ + L ++ L+ Sbjct: 24 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSPQ 83 Query: 72 FF 73 + Sbjct: 84 WL 85 >gi|322384002|ref|ZP_08057732.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151479|gb|EFX44666.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 57 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 22/52 (42%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL + LG++ Q + E G I + I + F Sbjct: 2 REERGISQEKLAQILGVSRQSIISIENGRYNPSLILAYQIPKYFNKSIEYVF 53 >gi|320178346|gb|EFW53317.1| repressor protein c2, putative [Shigella boydii ATCC 9905] Length = 218 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 ++G+R+ R G++Q+ L + G+T + K E+G+ + L ++ L+ Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSPQ 61 Query: 72 FF 73 + Sbjct: 62 WL 63 >gi|269794408|ref|YP_003313863.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269096593|gb|ACZ21029.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 64 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G+SQ LG LG++ Q + E G I+ + + F Sbjct: 5 VRALREAAGLSQAALGTVLGVSRQTINSIETGKYDPSLPLAIAIARHFTTTVEEIF 60 >gi|238063637|ref|ZP_04608346.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885448|gb|EEP74276.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 468 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 18/121 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFF 73 VG+R+ R +SQ+ + LG + V K E+G+ + S L I+ VL Sbjct: 77 VGRRVAYWRGRRKLSQQVFADRLGKSKSWVDKVERGIRSLDKVSTLHDIAAVLRID---- 132 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-----RQKIIELVRSIVS 128 + + + D +G++ R + DV V R++++ + Sbjct: 133 -------AAVLLGRDAQPADVTGRVEGVEHVREALSTYDVAVGRQPARRRVLA-ADRLAQ 184 Query: 129 S 129 Sbjct: 185 D 185 >gi|271966422|ref|YP_003340618.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509597|gb|ACZ87875.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 192 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 5/115 (4%) Query: 7 IPNPV-DIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + NPV D+ VG R+R R + L G+T + + E G +L ++ Sbjct: 1 MENPVGDVLAGVGPRLRALRQARSATLAALANETGLTASTLSRLENGKLLPTLEQLLPLA 60 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVR 116 P+ PT I + P + + + I R Sbjct: 61 RAHGVPLDDLVAAPPTGDPRIHLRPVRRSGLVMVPLTRRAGGIQAYKMIYPPAGR 115 >gi|225017271|ref|ZP_03706463.1| hypothetical protein CLOSTMETH_01197 [Clostridium methylpentosum DSM 5476] gi|224949956|gb|EEG31165.1| hypothetical protein CLOSTMETH_01197 [Clostridium methylpentosum DSM 5476] Length = 230 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + L R G+SQ++ + LG++ + YEKG+ G + + ++ + F SP Sbjct: 9 LTLLRKEKGISQKQAAQELGVSQALLSHYEKGIRECGLAFVIRAADFYDVSCDFLLGRSP 68 Query: 79 TVCSDISSEENNVMDFISTPD 99 + E + + + + Sbjct: 69 ERKGTTLTVE-ELPEPAESKE 88 >gi|229815066|ref|ZP_04445403.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM 13280] gi|229809296|gb|EEP45061.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM 13280] Length = 391 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L LG++ Q V K+E + +L + ++ E + Sbjct: 6 NLQYLRAERRMTQEQLAMLLGVSRQSVTKWEAEKSYPEMDKLIKMCQIFECSLDDLVQGD 65 >gi|209919283|ref|YP_002293367.1| putative phage repressor [Escherichia coli SE11] gi|209912542|dbj|BAG77616.1| hypothetical phage repressor [Escherichia coli SE11] Length = 218 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 ++G+R+ R G++Q+ L + G+T + K E+G+ + L ++ L+ Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSPQ 61 Query: 72 FF 73 + Sbjct: 62 WL 63 >gi|254440801|ref|ZP_05054294.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] gi|198250879|gb|EDY75194.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] Length = 130 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 36/78 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + G R+ R G+ + L E LG+ + ++ +E+ + A+R+Q ++ +L Sbjct: 13 NEANATFGDRLAAARQAKGLDVDGLSEKLGVDVRTIKVWERDADMPHANRIQMLAGLLNV 72 Query: 69 PISFFFDVSPTVCSDISS 86 + + S+++ Sbjct: 73 SMVWLVSGESNGSSEVAD 90 >gi|188491927|ref|ZP_02999197.1| repressor protein C2 [Escherichia coli 53638] gi|194434099|ref|ZP_03066368.1| repressor protein C2 [Shigella dysenteriae 1012] gi|188487126|gb|EDU62229.1| repressor protein C2 [Escherichia coli 53638] gi|194417643|gb|EDX33743.1| repressor protein C2 [Shigella dysenteriae 1012] gi|332096959|gb|EGJ01947.1| repressor protein C2 [Shigella dysenteriae 155-74] Length = 218 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 ++G+R+ R G++Q+ L + G+T + K E+G+ + L ++ L+ Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSPQ 61 Query: 72 FF 73 + Sbjct: 62 WL 63 >gi|154496456|ref|ZP_02035152.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC 29799] gi|150274539|gb|EDN01616.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC 29799] Length = 71 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G++Q++LG +G + Q + E+G + I++V + + F Sbjct: 5 NRLKELRAAKGLNQQELGALVGASRQTISLIERGDYNPSITLALRIAKVFGTTVEQVF 62 >gi|149276081|ref|ZP_01882226.1| hypothetical protein PBAL39_22460 [Pedobacter sp. BAL39] gi|149233509|gb|EDM38883.1| hypothetical protein PBAL39_22460 [Pedobacter sp. BAL39] Length = 130 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 8/108 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS---- 71 G +IR R Q + + LGI+ K EKG+ + SRL I+ + Sbjct: 9 GFKIRSLRQRQMKGQNAIAQNLGISIAAYAKIEKGITDINISRLTQIAALFNVKPEILLP 68 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL----QLNRYFIQIDDVKV 115 + + + S + + EN + + +L + QI+++K+ Sbjct: 69 SYIEEEKVIESSVGNIENIEKINALNSEVIKLQSELINAYEQIENLKL 116 >gi|50953954|ref|YP_061242.1| DNA-binding helix-turn-helix protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950436|gb|AAT88137.1| DNA-binding helix-turn-helix protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 384 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + L R G S +L + GI + K E G+ + +RLQ ++E L+ P+ F Sbjct: 4 QMLTLLRESRGYSGAQLAKLAGIPQPTLSKVENGLAVIDEARLQQLAEALDYPVEAF 60 >gi|18249875|ref|NP_543063.1| putative lambda repressor [Enterobacteria phage phiP27] gi|18152342|emb|CAC83529.1| putative lambda repressor [Enterobacteria phage phiP27] Length = 218 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 ++G+R+ R G++Q+ L + G+T + K E+G+ + L ++ L+ Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSPQ 61 Query: 72 FF 73 + Sbjct: 62 WL 63 >gi|24418792|sp|O59472|Y1808_PYRHO RecName: Full=Putative HTH-type transcriptional regulatory protein PH1808 Length = 315 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R G S +L LGI+ + +Q+YEKG + V + EV + P+ D Sbjct: 128 GKKLKALREEHGYSITELAGILGISRKSLQRYEKGESVVSLEVALRLEEVFDEPLVKPID 187 Query: 76 VSPTVCSDI--SSEENNVMDFISTPDGLQLNR 105 V D+ +SE +N+++ + + R Sbjct: 188 VLRARLKDVTLTSEPDNILE----KEVFEKLR 215 >gi|117918776|ref|YP_867968.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117611108|gb|ABK46562.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 191 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 30/74 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K G++ + + E+G + + L I+ + Sbjct: 4 INSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDI 84 S F + +P + Sbjct: 64 STFLEPTPESQGAL 77 >gi|47565459|ref|ZP_00236500.1| transcriptional regulator, XRE family [Bacillus cereus G9241] gi|47557449|gb|EAL15776.1| transcriptional regulator, XRE family [Bacillus cereus G9241] Length = 404 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTALAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|325110412|ref|YP_004271480.1| cupin [Planctomyces brasiliensis DSM 5305] gi|324970680|gb|ADY61458.1| Cupin 2 conserved barrel domain protein [Planctomyces brasiliensis DSM 5305] Length = 189 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +RIR R G++ E++ G+T + K E L I++VL P++ Sbjct: 8 QRIRAIRRERGLTLEEVASKSGLTRSWLSKVENFRVTPSLPALSQIAQVLGIPVA 62 >gi|293396666|ref|ZP_06640942.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291420930|gb|EFE94183.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 197 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 27/74 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R R G+SQ L G++ + + E G V + L ++ LE + Sbjct: 24 YLSSNVRGYRQQAGLSQMALAGLSGVSRRMLAGIEAGDRNVSLAVLDKLAAALEVSFTDL 83 Query: 74 FDVSPTVCSDISSE 87 + + E Sbjct: 84 IQAPDARGNHLIGE 97 >gi|238021090|ref|ZP_04601516.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147] gi|237868070|gb|EEP69076.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147] Length = 351 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 ++ LG++Q L E L ++ V Y G+N + +E+L P+S F SP + Sbjct: 43 KKKKELGLTQAILAEKLDVSQGAVNMYLNGINPLNTPIASRFAELLNVPVSDF---SPRL 99 Query: 81 CSDIS 85 ++I Sbjct: 100 AAEIG 104 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ R G+SQE+LG+ + + + E G N+ G++ + I+EVL + Sbjct: 125 RLIYAREQKGISQEQLGKAINKSQSAIAALETGRNQ-GSTNIAKIAEVLGVSAIWL 179 >gi|228925132|ref|ZP_04088242.1| hypothetical protein bthur0011_60040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834471|gb|EEM80000.1| hypothetical protein bthur0011_60040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 108 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + CL I +E G A + I+E+ I Sbjct: 3 HLSKRLAELRKKRGYTQADISHCLNIARTTYANWEYGKADPDADSIMRIAELHNISIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTP--DGLQ 102 F + + S + S + + D + + L Sbjct: 63 FGRNNPLESKLESIKVALADIPAEKQQEALD 93 >gi|209542873|ref|YP_002275102.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530550|gb|ACI50487.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 28/74 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R +SQ+ L LGI+ + E V AS L ++ L+ I Sbjct: 6 IGHIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEALS 65 Query: 75 DVSPTVCSDISSEE 88 V + E Sbjct: 66 GVDEQRLRGLLHEA 79 >gi|166031433|ref|ZP_02234262.1| hypothetical protein DORFOR_01130 [Dorea formicigenerans ATCC 27755] gi|166028838|gb|EDR47595.1| hypothetical protein DORFOR_01130 [Dorea formicigenerans ATCC 27755] Length = 115 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 +R++ R LG++QE++G+ LG+T + E G + + I + Sbjct: 3 ERLKTLRKSLGLTQEEMGQRLGVTKTAICSLESGRRNLTEQMAKSICREFRVDYYWLTVG 62 Query: 74 ----FDVSPTVCSDISSEENNVMD 93 F +P D EE N+ + Sbjct: 63 DGEMFVAAPDCLIDEVVEEYNLDE 86 >gi|53714902|ref|YP_100894.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|52217767|dbj|BAD50360.1| putative transcriptional regulator [Bacteroides fragilis YCH46] Length = 152 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+++ G IR R+ + Q+ L + +T V KYEK + + L + L P+ Sbjct: 10 VNVHHGHNIRRTRIEKNIKQDALAALVNMTQPNVSKYEK-MRVIEDEMLNRFARALNVPV 68 Query: 71 SFF 73 + Sbjct: 69 EYL 71 >gi|28379166|ref|NP_786058.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254557296|ref|YP_003063713.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300768612|ref|ZP_07078511.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181362|ref|YP_003925490.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272004|emb|CAD64909.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254046223|gb|ACT63016.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300493919|gb|EFK29088.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046853|gb|ADN99396.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 106 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFF 73 +GK IR RR G++ E+L E ++ + + E+G + + L I+E L I+ F Sbjct: 5 IGKIIRQRRQQHGITIEQLAEQSNVSISLISRLERGKVDNIKLQSLTAIAETLNLKIADF 64 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 F ++ + + + D + Sbjct: 65 FRDELLQSPNVVALLDYLSDLPA 87 >gi|84501573|ref|ZP_00999745.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84390194|gb|EAQ02753.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 466 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 25/140 (17%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R LG++Q+ LG++ + + E V + + +++ Sbjct: 6 LYAGAKLRETRQRLGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLSLAQEFG----- 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP-----------------DGLQLNRYFIQIDDV-- 113 FDV+ D +++ + ++ P + L R FI + Sbjct: 61 -FDVTELSTGDSERLVSDMREAMADPVLADVAPPLADIRLTASNAPALARAFIHLHRAYR 119 Query: 114 KVRQKIIELVRSIVSSEKKY 133 + +++ L ++ + + Sbjct: 120 QTHERLASLDEALGREDART 139 >gi|303250418|ref|ZP_07336616.1| hypothetical protein APP6_1833 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650744|gb|EFL80902.1| hypothetical protein APP6_1833 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 128 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++IR R I SQEK+ E L ++ K E+G ++ +LQ I+ + + Sbjct: 5 EKIRAMREINHWSQEKMAEKLAMSANGYAKIERGQTKLNLDKLQQIANIFNIDV 58 >gi|284041700|ref|YP_003392040.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945921|gb|ADB48665.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 274 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +IP+ VG +R R +SQ L G++ + + E G ++ + + H Sbjct: 1 MATIEIPHGTRSGVGPLLRGWRQRRRLSQLDLALEAGVSARHLSFVETGRSKPSSEMVLH 60 Query: 62 ISEVLESPI 70 ++E L+ P+ Sbjct: 61 LAEQLDVPL 69 >gi|254551040|ref|ZP_05141487.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 346 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G + + R G++Q +L E +G+T + +YE G + ++E+L Sbjct: 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGV 57 >gi|81427688|ref|YP_394685.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609327|emb|CAI54373.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 189 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ RR+ L ++Q+ + + L + Q + +E G N L IS + + + Sbjct: 6 LKKRRIDLHLTQQAVADQLHTSRQTISNWENGKNYPDVPMLVAISNLYDLSLD 58 >gi|75759233|ref|ZP_00739334.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493296|gb|EAO56411.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 68 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 7 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENKKYNPSLALCIELAKALKTDLNSLF 64 >gi|327398295|ref|YP_004339164.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM 10411] gi|327180924|gb|AEA33105.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM 10411] Length = 182 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 2/95 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +IR R M+ L + G + + + E+ + S L+ I++ L I Sbjct: 1 MRVGSKIREIRTKKNMTLRDLSKKSGCSLGFLSQVERDLVSPTISSLRRIADALGINIIS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI--STPDGLQLNR 105 F+ I + N F + +L R Sbjct: 61 LFEEREPPVDSIVVRKTNRGKFENRRSRVKYELLR 95 >gi|325169000|ref|YP_004285747.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325052813|dbj|BAJ83149.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 134 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G +R R LG+S ++ + + K E G V R+ I+E+ + Sbjct: 39 GANVRAGRNALGLSLTQMANLIDADRAYIGKVEHGKINVSIDRMSSIAELFRVHL 93 >gi|325261429|ref|ZP_08128167.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032883|gb|EGB94160.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 67 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + IR R +Q+++ + L IT KYE G + + ++++ + + Sbjct: 4 ENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60 >gi|294629832|ref|ZP_06708392.1| PE-PGRS family protein [Streptomyces sp. e14] gi|292833165|gb|EFF91514.1| PE-PGRS family protein [Streptomyces sp. e14] Length = 410 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +R R GMSQE+L E ++ V+K E+G N V L ++ L + S F Sbjct: 6 ENVRNHRRRAGMSQEQLAEAASLSVGVVRKVEQGQN-VSVESLNALARALGTETSSLFAT 64 Query: 77 SPTVCSDISSEENN 90 ++ S E Sbjct: 65 EVPSPIEVDSSEGP 78 >gi|283834367|ref|ZP_06354108.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] gi|291069908|gb|EFE08017.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] Length = 185 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKR+ R LG+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|257877218|ref|ZP_05656871.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257811384|gb|EEV40204.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 198 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N+ K+I+ R L +SQE L E L ++ Q + +E + L +S + + + Sbjct: 8 MNLSKQIKKHRERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSLD 66 >gi|228958063|ref|ZP_04119798.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296502381|ref|YP_003664081.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|228801580|gb|EEM48462.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323433|gb|ADH06361.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 404 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I++ LE SF Sbjct: 4 LGEKIKTLRKEKKLTQTDLAGS-ELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EDDDVEIVEL 72 >gi|229060141|ref|ZP_04197511.1| Transcriptional regulator, XRE [Bacillus cereus AH603] gi|228719181|gb|EEL70791.1| Transcriptional regulator, XRE [Bacillus cereus AH603] Length = 107 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+ R + QE + + LGI YE+G + L ++ E I + Sbjct: 3 GTRLHTLRKERKLRQEDMAKQLGIARTTYAMYEQGNREPDYNTLIKLATFFEVSIDYL 60 >gi|311739935|ref|ZP_07713769.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305008|gb|EFQ81077.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 437 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G++Q + + LG++ + + E + + L +++ +F + Sbjct: 7 GARIHALRKQRGLTQVAMAKQLGLSTSYLNQLENDQRPLTVTVLMQLAQRFNLDPGYFAN 66 Query: 76 VSPT 79 Sbjct: 67 DRDA 70 >gi|254488744|ref|ZP_05101949.1| DNA-binding protein [Roseobacter sp. GAI101] gi|214045613|gb|EEB86251.1| DNA-binding protein [Roseobacter sp. GAI101] Length = 188 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 33/75 (44%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ + + +R++ R G+S + + + G++ V + E+G + + L +++ L+ Sbjct: 5 PDAILNQLPRRLKAARAAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTRALQ 64 Query: 68 SPISFFFDVSPTVCS 82 + D Sbjct: 65 VDFAGLLDGGQRPAE 79 >gi|254436317|ref|ZP_05049823.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] gi|207088007|gb|EDZ65280.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] Length = 132 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 1 MVGNKKIPNPVDINV--GKR-IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +VG + +P+ V + G+ I++ R+ G++Q L E ++ + EKG Sbjct: 48 VVGGEAMPHEVVKRLVEGENPIKVWRIYRGLTQHNLAEQAELSQSYLAMIEKGEREGTVK 107 Query: 58 RLQHISEVLESPISFFFDVSP 78 L+ I++VL I D Sbjct: 108 ALKQIAKVLGVDIDDLVDTRD 128 >gi|196048249|ref|ZP_03115426.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196020986|gb|EDX59716.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 108 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 2/91 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + I+E+ I Sbjct: 3 HLSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNISIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTP--DGLQ 102 F + + S + S + + D + + L Sbjct: 63 FGRNNPLESKLESIKVALADIPAEKQQEALD 93 >gi|159038191|ref|YP_001537444.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917026|gb|ABV98453.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 219 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 8/112 (7%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N V VG R+R R G++ + G++ + + E G R L ++ + Sbjct: 5 TNDVLDAVGPRLRALRRHRGLTLADVSTTTGVSESTLSRLEGGQRRATLELLLPLARIYN 64 Query: 68 SPISFFFDVSPTVCS--DISSEENNVMDFI---STPDGLQLNRYFIQIDDVK 114 P+ T ++ M F+ P G + F I + Sbjct: 65 VPLDDLVGAPRTGDPRIHLTPIRRFGMAFVPLSRRPGG---VQAFKMIIPAR 113 >gi|77458573|ref|YP_348078.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382576|gb|ABA74089.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1] Length = 215 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 30/67 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+ V + ++ R +S + L G++ + + E G + L I++ L+ Sbjct: 29 DPICERVAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSVPSIKVLCKIAKGLKV 88 Query: 69 PISFFFD 75 ++ F + Sbjct: 89 SVAAFLE 95 >gi|15613851|ref|NP_242154.1| transcriptional repressor of PBSX genes [Bacillus halodurans C-125] gi|10173904|dbj|BAB05007.1| transcriptional repressor of PBSX genes [Bacillus halodurans C-125] Length = 112 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 46/104 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ GKR+R R+ +SQE+L + LG+ + +YE + L +++ + + Sbjct: 1 MSFGKRLRSLRINKKLSQEELAKTLGLNRSTLARYELENTQPDYETLTKMADFFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + +S ++ + ++ + L + + ++K R Sbjct: 61 ILGRVDDETTQLSISFSHGGEELTEDEKAHLEQELKKYRELKER 104 >gi|298206675|ref|YP_003714854.1| transcriptional regulator, XRE family protein [Croceibacter atlanticus HTCC2559] gi|83849306|gb|EAP87174.1| transcriptional regulator, XRE family protein [Croceibacter atlanticus HTCC2559] Length = 67 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G IR R G SQE+L + + E+ + + IS+ L+ I Sbjct: 7 HFGNNIRRLRKEQGFSQEELAHKADLHRTYIGMIERAEKNITLLNIGKISKALDVEIKEL 66 Query: 74 F 74 F Sbjct: 67 F 67 >gi|332879673|ref|ZP_08447366.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682390|gb|EGJ55294.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 111 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 28/83 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K I R G +Q+ + E LGI EKG + RL I+ L + Sbjct: 9 KNILKIRTDKGFTQQNVAEHLGIEQGSYSLIEKGRRELSIERLLQIAIFLGVDVKDIITY 68 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 ++ E V+ D Sbjct: 69 PNREYNNSDDEVKAVLQIELKKD 91 >gi|313677850|ref|YP_004055846.1| transcriptional regulator, xre family [Marivirga tractuosa DSM 4126] gi|312944548|gb|ADR23738.1| transcriptional regulator, XRE family [Marivirga tractuosa DSM 4126] Length = 69 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 23/56 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I++ R +SQ L E G+T Q + EKG IS +L I F Sbjct: 5 IKVERARHSLSQTDLAEKCGVTRQTIYAIEKGKFTPSVILAFKISRILSISIEDLF 60 >gi|262197634|ref|YP_003268843.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080981|gb|ACY16950.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 147 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G R R LG++QE E L ++ + + E+G + L I+ VL Sbjct: 7 KSIGSAARQARTALGLTQEDAAERLDVSVEFYARIERGNSLPSVPTLARIAAVLGVSADA 66 Query: 73 FFDVSPTVCSDISS 86 +P ++ Sbjct: 67 LLGRAPFAPGASAT 80 >gi|229009876|ref|ZP_04167096.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048] gi|228751494|gb|EEM01300.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048] Length = 83 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 20 VKNQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|229131388|ref|ZP_04260287.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196] gi|229165389|ref|ZP_04293175.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621] gi|228618093|gb|EEK75132.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621] gi|228652079|gb|EEL08017.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196] Length = 83 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 20 VKNQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|227431795|ref|ZP_03913822.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352478|gb|EEJ42677.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 65 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R G+SQ++L + I + +++YE G N + L +++ E I + Sbjct: 2 NRLRELRNERGLSQDRLANEMLINIKTLRRYEVGENDPRVAILIDLADYFEVSIDYL 58 >gi|184154706|ref|YP_001843046.1| hypothetical protein LAF_0230 [Lactobacillus fermentum IFO 3956] gi|183226050|dbj|BAG26566.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956] Length = 370 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+++ RI R G+S KL + L ++ + KYE+GV + ++E Sbjct: 27 DLDMKNRITELREEKGLSMRKLSKSLKEKGLSLSTDSLSKYERGVRNPKIENWEKLAEFF 86 Query: 67 ESPISFF 73 + P+ + Sbjct: 87 KVPVDYL 93 >gi|163758095|ref|ZP_02165183.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] gi|162284384|gb|EDQ34667.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] Length = 478 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G RIR R G++Q + E LGI+ + E+ + + +S V + + Sbjct: 6 IFAGPRIRRIRNAKGLTQTAMAEALGISPSYLNLIERNQRPLTVQLILKLSSVYKVDVE- 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 ++ ++S + D + + Sbjct: 65 --ELQGEAGGALASLKEVFADPLLAGE 89 >gi|156977428|ref|YP_001448334.1| hypothetical protein VIBHAR_06215 [Vibrio harveyi ATCC BAA-1116] gi|156529022|gb|ABU74107.1| hypothetical protein VIBHAR_06215 [Vibrio harveyi ATCC BAA-1116] Length = 68 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + G +RL R +SQ+KL I + + E+G + + ++ VL Sbjct: 2 NDLAKAFGNNLRLMRKSKSISQDKLALLADIDRSYIGRIERGEVNITLEKAYQLARVLGC 61 Query: 69 PI 70 + Sbjct: 62 DV 63 >gi|170731783|ref|YP_001763730.1| helix-turn-helix domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169815025|gb|ACA89608.1| helix-turn-helix domain protein [Burkholderia cenocepacia MC0-3] Length = 356 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFD 75 ++ + R +++++L E GIT + + E G L+ +++VL P+ FFF Sbjct: 5 SKLAIARKRRQLTKKELAEKSGITAVTLTRLETGKTADPSMETLETLAQVLGYPVDFFFG 64 Query: 76 VSPTVCSDISSE 87 S + ++ Sbjct: 65 QSYEELTTDAAS 76 >gi|330828143|ref|YP_004391095.1| DNA-binding protein [Aeromonas veronii B565] gi|328803279|gb|AEB48478.1| DNA-binding protein [Aeromonas veronii B565] Length = 189 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 36/95 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R++ R G S + ++ + + E+G + + L I+ S F Sbjct: 7 HLAARLKGLRSERGWSLDATARETSVSKAMLGQIERGESSPTVATLWKIATGFRVSFSSF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + P +++ + + +G+Q+ F Sbjct: 67 IEPIPAAQAEVLYRTADAIRQQPAGEGMQVAPLFP 101 >gi|328958082|ref|YP_004375468.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328674406|gb|AEB30452.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 63 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R G++Q L + +T Q V E +S++L + + F Sbjct: 3 NKIEQLRKDKGLTQADLAKACNVTRQTVNAIENNKYDPTLQLAFSLSKILNTEVDKLF 60 >gi|312864492|ref|ZP_07724723.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] gi|311099619|gb|EFQ57832.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] Length = 137 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I+ R SQE L E +G++ Q + K+E G + ++E+ E + Sbjct: 2 INKTIQSLRKKADYSQETLAEMVGVSRQTLSKWELGESLPDIISSSRLAEIFEISLDELV 61 Query: 75 DVSPTVCSDISSEENNVM 92 +E V Sbjct: 62 KGDELPFMSKPTEGKYVF 79 >gi|257470593|ref|ZP_05634683.1| putative transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317064799|ref|ZP_07929284.1| DNA-binding protein [Fusobacterium ulcerans ATCC 49185] gi|313690475|gb|EFS27310.1| DNA-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 177 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I++ R + + L + ++ + E+ +N S LQ I + L + Sbjct: 1 MTLGEKIKIIRKRKNYTLKDLSDMTKLSIGFLSNIERDLNSPSISNLQQICQALAVNLME 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 D + T EE + + P+ Sbjct: 61 ILDPTDTHSPVTRKEERE--EILENPE 85 >gi|187777459|ref|ZP_02993932.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC 15579] gi|187774387|gb|EDU38189.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC 15579] Length = 220 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I+ R+ G++Q++L + LG+ + + E G + S + IS+VL I+ Sbjct: 4 VSDKIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGKGIN--- 60 Query: 75 DVSPTVCSDISSEEN 89 D+ + ++SSE Sbjct: 61 DIGISFEEEVSSEPK 75 >gi|77166000|ref|YP_344525.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|76884314|gb|ABA58995.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] Length = 165 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 1 MVGNKKIPNPVDINV--GKR-IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +VG + +P+ V + G+ I++ R+ G++Q L E ++ + EKG Sbjct: 81 VVGGEAMPHEVVKRLVEGENPIKVWRIYRGLTQHNLAEQAELSQSYLAMIEKGEREGTVK 140 Query: 58 RLQHISEVLESPISFFFDVSP 78 L+ I++VL I D Sbjct: 141 ALKQIAKVLGVDIDDLVDTRD 161 >gi|283479602|emb|CAY75518.1| HTH-type transcriptional regulator ansR; Ans operon repressor protein [Erwinia pyrifoliae DSM 12163] Length = 140 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 GKR++ R +Q+++ +G+ Q KYE G++ A +L ++E+ + I + Sbjct: 23 GKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELFTTTIDY 79 >gi|283780906|ref|YP_003371661.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283439359|gb|ADB17801.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068] Length = 183 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 3/96 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RIR R G++ E+L E G+T + K E L I+E + Sbjct: 4 LQLSQRIREMRTSAGLTLEELAEKTGMTRGVISKIENFRVTPSLPTLAKIAEAFGVSTAD 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + + + RYF Sbjct: 64 LLAGLDQRPQIVVVRKEERQEITRDGSAI---RYFA 96 >gi|229164001|ref|ZP_04291939.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803] gi|228619472|gb|EEK76360.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803] Length = 73 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ LG+ +G + Q + E+G I+ + P+ F + Sbjct: 5 NRVRELRAKHRISQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIFML 64 Query: 77 SPTVCSD 83 D Sbjct: 65 VEGEEDD 71 >gi|258406639|ref|YP_003199380.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798866|gb|ACV69802.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 468 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 G ++R R+ LG+SQ +L E GI+ + YE + + +Q ++ L+ Sbjct: 5 GNQLRETRLELGLSQARLAELTGISQHLLSAYELEKSTLAPDLIQKLASTLQ 56 >gi|45476502|ref|NP_995417.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|45357213|gb|AAS58608.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] Length = 118 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R G+SQEKL E +G+ ++ YE G + +++VL P + Sbjct: 4 KRLKEAREAAGLSQEKLSELVGVEGVNPRSRMSNYEAGRFAPPFEFVCRVADVLGYPEYY 63 Query: 73 FF 74 F+ Sbjct: 64 FY 65 >gi|163938382|ref|YP_001643266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229056228|ref|ZP_04195651.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603] gi|163860579|gb|ABY41638.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228721115|gb|EEL72650.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603] Length = 64 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 3 NQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|86133594|ref|ZP_01052176.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85820457|gb|EAQ41604.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 66 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++++R IL ++Q+ L + +G++ Q + EK +S+V ++ FF + Sbjct: 5 LKVQRAILNLTQDDLAKQIGVSRQTINSIEKNRYVPSTVLALKLSKVFNITVNEFFTLEE 64 Query: 79 T 79 Sbjct: 65 D 65 >gi|85716570|ref|ZP_01047540.1| hypothetical protein NB311A_11977 [Nitrobacter sp. Nb-311A] gi|85696571|gb|EAQ34459.1| hypothetical protein NB311A_11977 [Nitrobacter sp. Nb-311A] Length = 114 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 RI+ R GM+ E L E +G++ VQ+ E G + + L Sbjct: 4 NRIKELRESQGMTLETLAELVGLSTSYVQRLENGERNLAVKHFAAFATALRV 55 >gi|313204957|ref|YP_004043614.1| transcriptional regulator [Paludibacter propionicigenes WB4] gi|312444273|gb|ADQ80629.1| transcriptional regulator [Paludibacter propionicigenes WB4] Length = 190 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG++I +S+E+L E G+T Q++ E S L I+ L + Sbjct: 4 IIVGEKISTLCADKNISKEELAERSGLTVAQIEFIENSDTVPSLSPLIKIARALGVRLGT 63 Query: 73 FFDVSPTVCS 82 F D S + Sbjct: 64 FLDDSDELGP 73 >gi|307545860|ref|YP_003898339.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217884|emb|CBV43154.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 179 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ ++ R G S +L GI + + E+G + ++ L P Sbjct: 12 LGQHLQTLRRARGWSLSQLATAAGIAKSNLSRLEQGDGNPTLDTIWRLAVQLNVP 66 >gi|262373390|ref|ZP_06066669.1| RtrR protein [Acinetobacter junii SH205] gi|262313415|gb|EEY94500.1| RtrR protein [Acinetobacter junii SH205] Length = 70 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G IR R+ ++QEKL I V + E+G + +L I+++L+ Sbjct: 8 IGHAIRNCRIEQKITQEKLALLCNIDRSYVGRIERGEVNITVLKLYEIAQILKV 61 >gi|257440445|ref|ZP_05616200.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197067|gb|EEU95351.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 210 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+ I R + G SQ++L + LG + +QK+E+G R+ + + L P+ Sbjct: 8 IGEAIAFARNVAGRSQQELADMLGRDKRTIQKWERGEIRIALEDFLDVFDTLHLPVG 64 >gi|238853499|ref|ZP_04643875.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] gi|238833857|gb|EEQ26118.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] Length = 264 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R+ LG+SQ ++ + +T K E+G++ + A L I E + IS Sbjct: 1 MQIGKELKKLRLELGLSQTEMVGDI-LTKSYYSKIERGLHEINAKDLIEILERNKVNISD 59 Query: 73 FFDV 76 FF Sbjct: 60 FFKG 63 >gi|229043538|ref|ZP_04191247.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|228725760|gb|EEL77008.1| Transcriptional regulator, Xre [Bacillus cereus AH676] Length = 404 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I++ LE SF Sbjct: 4 LGEKIKTLRKEKKLTQTDLAGS-ELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EDDDVEIVEL 72 >gi|229144395|ref|ZP_04272800.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228639026|gb|EEK95451.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] Length = 404 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I++ LE SF Sbjct: 4 LGEKIKTLRKEKKLTQTDLAGS-ELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EDDDVEIVEL 72 >gi|229155360|ref|ZP_04283470.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|228628075|gb|EEK84792.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] Length = 404 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTALAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|163745179|ref|ZP_02152539.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161381997|gb|EDQ06406.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 183 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG ++R R G+SQ +L G+T + EK + L+ + + + ++ Sbjct: 1 MNVGDKLRAIRKKHGLSQRELAAKAGLTNGTISLIEKNRTSPSVASLKSLLDAIPISMAE 60 Query: 73 FFDVSPTVCS 82 FF + S Sbjct: 61 FFSILEEDDS 70 >gi|159906046|ref|YP_001549708.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159887539|gb|ABX02476.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 66 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R M+QE+LG+ +G+ + + EKG IS+ L + + F Sbjct: 4 KIKEYRAKYDMTQEELGKIVGVRRETISFLEKGKYNPSLKLAHSISKALNATVDELF 60 >gi|254251221|ref|ZP_04944539.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] gi|124893830|gb|EAY67710.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] Length = 189 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V +R+R R G+SQ +L + G+T + E+G L+ Sbjct: 1 MSETESMSTE----VAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + E + ++ FF + S + + + + L Sbjct: 57 KLLECIPMSLAEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGA 102 >gi|157961714|ref|YP_001501748.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157963271|ref|YP_001503305.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846714|gb|ABV87213.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] gi|157848271|gb|ABV88770.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 68 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I G +R +R LGMSQ+KL I + E+G + + ++EVLE + Sbjct: 6 IQFGFNLRKKRKELGMSQDKLALLAEIDRSYGGRIERGEVNITLEKAYQLAEVLECDV 63 >gi|95931163|ref|ZP_01313886.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95132769|gb|EAT14445.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 215 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV-LESPISFFF 74 G+RI+ R++L MSQ +L + L I+ QV E G N+V + L + + Sbjct: 3 GQRIKEIRLLLEMSQAELADELCISKGQVSNVESG-NKVPSEMLLELIIFKFGVNRDWLI 61 Query: 75 DVSPTVCSDISSEENNV 91 D ++ + ++ Sbjct: 62 DGKGMPFEEVQPAKPSL 78 >gi|110637900|ref|YP_678107.1| hypothetical protein CHU_1496 [Cytophaga hutchinsonii ATCC 33406] gi|110280581|gb|ABG58767.1| hypothetical protein CHU_1496 [Cytophaga hutchinsonii ATCC 33406] Length = 79 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 15 VGKRIRLRRMILGMS-QEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK++ R G + QE GI Q +YE G N + +L I + + F Sbjct: 15 VGKKLTDLRKAAGYTNQESFAHDAGIARGQYGRYENGSN-ITIGKLYKILKYHKISFEDF 73 Query: 74 FD 75 F+ Sbjct: 74 FN 75 >gi|326575959|gb|EGE25882.1| peptidase S24-like protein [Moraxella catarrhalis CO72] Length = 233 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 18 RIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q+++ E + G++ + E G ++ +R ++ + + + Sbjct: 6 RLKYARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSK-STTRAIELAHLFGVDVHWLISG 64 Query: 77 SPT 79 Sbjct: 65 EGE 67 >gi|307610830|emb|CBX00445.1| phage repressor [Legionella pneumophila 130b] Length = 220 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGEC-LGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI R LG++ ++L + ++ ++ +E+G G + +++ L S+ Sbjct: 6 QIGNRITKARKELGITIKELATRTVELSPARISNWEQGTRSPGPLEAKLLADQLNVSASY 65 Query: 73 FFDVSPTVCSDISSEENNVMDF---ISTPDG 100 ++ D+ N + + +S + Sbjct: 66 LLCLTDNPQGDLIQSYENKLRYIPILSMKEA 96 >gi|300855922|ref|YP_003780906.1| HTH motif containing protein [Clostridium ljungdahlii DSM 13528] gi|300436037|gb|ADK15804.1| HTH motif containing protein [Clostridium ljungdahlii DSM 13528] Length = 344 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 46/100 (46%), Gaps = 2/100 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR R ++QE++ L I+ V K+E G++ + L ++ VL+ ++ Sbjct: 1 MRISEVIRNCRKKENLTQEQVANYLNISAPAVNKWENGISYPDITLLSPLARVLKIDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + ++ + I++ +G + + F + D Sbjct: 61 LLAFNEKLTETEVNKFGKEVSEIASREGFK--KAFERGSD 98 >gi|295112179|emb|CBL28929.1| Predicted transcriptional regulators [Synergistetes bacterium SGP1] Length = 155 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R + G+SQ L + +G+ + ++E G + A +Q +++ L++ ++ Sbjct: 1 MKISDRVKTLRDLRGLSQGDLAQIIGVDVNTIWRWENGRSSP-ARSIQKLAQALDTTTAY 59 Query: 73 F 73 Sbjct: 60 L 60 >gi|284045383|ref|YP_003395723.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949604|gb|ADB52348.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 253 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +VG R+R R G+ +L +G++ + E G L I + L + Sbjct: 21 KDVGARLRRDREARGVGVRELARRIGVSPSLISAIELGKANPSIGTLYQIVDELNLSVD 79 >gi|253991420|ref|YP_003042776.1| hypothetical protein PAU_03947 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782870|emb|CAQ86035.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 88 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+ + R G+SQ + GI + + E G + +L I VLE PI F Sbjct: 20 VGSRLMVARSHRGLSQNDIQNATGIDRATLSRIENGRQHISLYQLLQILTVLEIPIEEF 78 >gi|258513519|ref|YP_003189741.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257777224|gb|ACV61118.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 141 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 49/132 (37%), Gaps = 16/132 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR+ R +Q++L + +G++ + E+G+ L +I++ + + Sbjct: 11 LGKRVAEIRGKN--TQKELAKAIGVSRSYIGNIEQGITVPSLEVLINIAQQYHVSLDWLV 68 Query: 75 --DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID------------DVKVRQKII 120 + + + + + ++ DF + + F ++ + Sbjct: 69 YGNTNSSPVAGATGYQHKSPDFFLRRQATAVEQNFSSAAFPPKILKQFKNLTPNNQRLVF 128 Query: 121 ELVRSIVSSEKK 132 E ++ + EK Sbjct: 129 EFIKMLTMYEKN 140 >gi|153009785|ref|YP_001371000.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561673|gb|ABS15171.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 72 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG + R+ G++QE++ E G + Q + E+G + +S LE+ ++F Sbjct: 5 VGDNLTWIRIEKGLTQEQVAEGSGFSQQYLSSLERGQYNPTIITIYELSLALET--TYF 61 >gi|311900230|dbj|BAJ32638.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 200 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + +L E GI+ + + E G R L ++ + Sbjct: 12 VGPRLRAIRQQHGTTLAQLSEQTGISVSTLSRLESGGRRPTLELLLPLARAHGVALDELV 71 Query: 75 DVSPT 79 D PT Sbjct: 72 DAPPT 76 >gi|299143941|ref|ZP_07037021.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518426|gb|EFI42165.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 178 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R+ ++QE+L + +T + + E+ + + L I E L + Sbjct: 1 MDIGNKLKNLRVKQALTQEELADRSELTKGFISQVERNLTSPSVATLIDILEALGTTPLE 60 Query: 73 FFDVS 77 FF+ Sbjct: 61 FFEDD 65 >gi|288962158|ref|YP_003452453.1| transcriptional regulator [Azospirillum sp. B510] gi|288914424|dbj|BAI75909.1| transcriptional regulator [Azospirillum sp. B510] Length = 483 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 13/132 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R G++Q ++ + LGI+ + E V L + + + F Sbjct: 10 LGPKVRRLRRDQGLTQAQMADQLGISPSYLNLIEHNQRPVTVPLLLKLGQRFGVDLQAFA 69 Query: 75 DVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV---------RQKIIE 121 + ++ ++ I D +L + V R + Sbjct: 70 EDEESRLVAGLREVFADPLFDGSDIKNQDFRELAAVAPTLGQAVVALYRGFRGARDDLQA 129 Query: 122 LVRSIVSSEKKY 133 L + EK + Sbjct: 130 LAERVADHEKLH 141 >gi|242371994|ref|ZP_04817568.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242350301|gb|EES41902.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 79 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R +SQ L +G++ Q + E +I++ L ++ F Sbjct: 16 NKVKQFRAHQKISQLSLARAVGVSRQTINMIENDKYNPSLKLCINIAKKLNVTLNDLF 73 >gi|256396613|ref|YP_003118177.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362839|gb|ACU76336.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 283 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFDVS 77 IR R G +QE+L G++ + ++ E+G + + +Q +++ L+ P + Sbjct: 15 IRAWRERRGWTQEELSHASGLSTRAIRSLERGRTLKPRRTTVQMLADALQVPRARLMGTV 74 Query: 78 PTVCSDISSEENNVMDFIST 97 D +E + + ++T Sbjct: 75 RRAVGDADAEADGTLGNVAT 94 >gi|229173521|ref|ZP_04301064.1| transcriptional regulator/TPR domain protein [Bacillus cereus MM3] gi|228609903|gb|EEK67182.1| transcriptional regulator/TPR domain protein [Bacillus cereus MM3] Length = 440 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S ++ +S+ LE + Sbjct: 18 MEIGERIRHVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKVSKKLEVKSDY 76 Query: 73 FFDVS 77 + + Sbjct: 77 LINGN 81 >gi|229020729|ref|ZP_04177452.1| Transcriptional regulator [Bacillus cereus AH1273] gi|229026999|ref|ZP_04183317.1| Transcriptional regulator [Bacillus cereus AH1272] gi|229190542|ref|ZP_04317539.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228592887|gb|EEK50709.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228734316|gb|EEL84992.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228740530|gb|EEL90805.1| Transcriptional regulator [Bacillus cereus AH1273] Length = 125 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 8/111 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R G + +++ + +G YE + A L ++++ ++ F Sbjct: 14 MDIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADIFDTTTDF 73 Query: 73 FFDVSPTVCSDISSEENNVMDFIST----PDGLQLNRYFIQIDDVKVRQKI 119 + + NV DF+ DG+++ +I +V +RQ + Sbjct: 74 IL----GRTENPNGLNFNVKDFLDQGRLHSDGVEITDEQAEIANVLLRQLL 120 >gi|227819601|ref|YP_002823572.1| MerR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338600|gb|ACP22819.1| putative MerR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 275 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VG+++R R G + E++ +GI + E+ V + L +++E + + Sbjct: 95 IDLQVGRKLRSLRHAGGKTLEQVAGDVGIAPSVLSTLERTSQGVSVAVLHNLAEYFGTTV 154 Query: 71 S 71 S Sbjct: 155 S 155 >gi|192361723|ref|YP_001981703.1| Helix-turn-helix motif [Cellvibrio japonicus Ueda107] gi|190687888|gb|ACE85566.1| Helix-turn-helix motif [Cellvibrio japonicus Ueda107] Length = 107 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R G + +KL E + + + E K R A +L I++ L + F Sbjct: 5 LGTKIKQLRDQRGYTLDKLAELSDSSKSYIWELENKAPPRPSADKLSKIADALGVTLGFL 64 Query: 74 FDVSPTVCSDISSEE 88 D + + + Sbjct: 65 IDEDSDQTQENAEDA 79 >gi|317130611|ref|YP_004096893.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475559|gb|ADU32162.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 66 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ + ++QE+L + +G+T Q + EKG I++VL + F Sbjct: 3 NNVKITRIKMSITQEQLAKRVGVTRQTIGLIEKGEYNPSLQLCVSIAKVLNKTLDELF 60 >gi|283479609|emb|CAY75525.1| HTH-type transcriptional regulator ansR; Ans operon repressor protein [Erwinia pyrifoliae DSM 12163] Length = 140 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 GKR++ R +Q+++ +G+ Q KYE G++ A +L ++E+ + I + Sbjct: 23 GKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLIQLAELFTTTIDY 79 >gi|228931333|ref|ZP_04094262.1| Transcription regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828336|gb|EEM74042.1| Transcription regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 135 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K I R +SQE+L +G+T Q + K+E+ L +S+ + + Sbjct: 1 MKISKSILDYRKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSDEMNISLDN 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + ++ I + E + Sbjct: 61 LIKGNNSIKERIMNNEKAI 79 >gi|229160744|ref|ZP_04288736.1| Transcriptional regulator, Xre [Bacillus cereus R309803] gi|228622759|gb|EEK79593.1| Transcriptional regulator, Xre [Bacillus cereus R309803] Length = 405 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I++ LE +SF Sbjct: 5 LGEKIKALRKEKKLTQTELSGS-ELTKSMLSQIENGKATPSMKTLQYIADKLECEMSFLL 63 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 64 EDDDEEIVEL 73 >gi|209520107|ref|ZP_03268882.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209499480|gb|EDZ99560.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 70 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G +R R L SQE+L E G+ V + E+G ++ L PI Sbjct: 6 RDFGAAVRSLREALSWSQEQLAEYAGLNRSYVGEIERGSAIASIVTADKLARALNVPIG 64 >gi|145298591|ref|YP_001141432.1| phage C protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851363|gb|ABO89684.1| phage C protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 87 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N ++ + KR+R R L +S+ K + LGI ++ YE G +G Sbjct: 1 MTAQPTQINLLNHHAAKRLRQLREQLALSRPKFADLLGIPPTTIKNYELGYREIGGGLFL 60 Query: 61 HISEV--LESPISFF 73 I+ L+ I + Sbjct: 61 LIAHHPDLKQHIDWL 75 >gi|148553099|ref|YP_001260681.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498289|gb|ABQ66543.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 75 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG + R G+ QE E GI+ + + E G + + +++ L P Sbjct: 2 DIRKLVGGNVARLRKKTGLKQEPFSEAAGISQSYLSQIENGHVNLTLLGVNDLAQALGVP 61 Query: 70 ISFFFDVSPTVCSD 83 F + D Sbjct: 62 PIELFRELSEMNPD 75 >gi|288227164|gb|ADC45065.1| putative transcriptional regulator (helix-turn-helix motif, XRE-like) [Cupriavidus metallidurans CH34] Length = 101 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+ I+L R G+SQ L + + E S + I+ L P+ Sbjct: 1 MNVGQAIKLCRTRRGISQADLARQAECSVSYLSMLENNKRDPTLSTMTKIAHALHMPVGI 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + ++ D T L+L Sbjct: 61 IFFLGAEGDDLTGIGKSLQGDLART--ALELL 90 >gi|125622888|ref|YP_001031371.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|2909717|gb|AAC12967.1| unknown [Lactococcus lactis subsp. cremoris MG1363] gi|124491696|emb|CAL96615.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300069626|gb|ADJ59026.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 185 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R+ ++QE++ + L + Q + ++E L ++++ +S + F Sbjct: 2 LGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALADLYDSDLLAF 60 >gi|15676896|ref|NP_274042.1| transcriptional regulator [Neisseria meningitidis MC58] gi|7226247|gb|AAF41408.1| transcriptional regulator [Neisseria meningitidis MC58] gi|316985888|gb|EFV64829.1| helix-turn-helix family protein [Neisseria meningitidis H44/76] gi|325134226|gb|EGC56875.1| DNA-binding protein [Neisseria meningitidis M13399] gi|325140273|gb|EGC62798.1| DNA-binding protein [Neisseria meningitidis CU385] gi|325200308|gb|ADY95763.1| DNA-binding protein [Neisseria meningitidis H44/76] gi|325206164|gb|ADZ01617.1| DNA-binding protein [Neisseria meningitidis M04-240196] Length = 123 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 12/124 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ R L M+Q ++ E G++ + YE+G+++ A +V + + Sbjct: 6 FFGNRLKEERKKLKMTQAEIAEKCGVSGRMWGDYERGISQPKAELFFQFEKV-GIDVQYV 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + SE N + + L L R D R+ I+ + R +EKK Sbjct: 65 MHGRRGETAVMPSETLNAEE----QELLVLFREAAAAD----REMILMVAR---RAEKKA 113 Query: 134 RTIE 137 +T Sbjct: 114 QTAL 117 >gi|32475356|ref|NP_868350.1| transcription regulator [Rhodopirellula baltica SH 1] gi|32445897|emb|CAD78628.1| similar to transcription regulator [Rhodopirellula baltica SH 1] Length = 362 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R LG+SQ +L G++ + VQ E G N V ++ I+ L + Sbjct: 21 AQLKQARQSLGLSQLQLAMRAGVSSRTVQFAESGQN-VSIGTMRRIAGALGMQADQLVRI 79 Query: 77 SPTVCSDISSEEN-NVMDFISTPDGLQ 102 P D +E +V D + G Sbjct: 80 DPGTGQDGFAELPWSVADKFRSNRGFD 106 >gi|194336892|ref|YP_002018686.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] gi|194309369|gb|ACF44069.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] Length = 131 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 VG+ IR R L ++Q +L G+ +YE+G +R A ++ + Sbjct: 68 VGEDIRRIRKKLNLTQAELASVFGVGKMAFSRYERGESRPPAPLVKLL 115 >gi|296110945|ref|YP_003621326.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU 11154] gi|295832476|gb|ADG40357.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU 11154] Length = 91 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ R + G+SQ++L + L ++ V YE G L +S +L++ + Sbjct: 28 NLKKYRTLSGISQDRLADLLCVSQVAVSNYETGKRIPDIDNLIKLSNILQTSV 80 >gi|296110834|ref|YP_003621215.1| hypothetical protein LKI_03520 [Leuconostoc kimchii IMSNU 11154] gi|295832365|gb|ADG40246.1| hypothetical protein LKI_03520 [Leuconostoc kimchii IMSNU 11154] Length = 110 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G +I+ R + ++Q +L E ++ + K E + + LQ+I++ L + + Sbjct: 6 IGNKIKELRTLQNLTQFELAEKANLSISLISKIEIQEENIKINTLQNIAKALNTTV 61 >gi|302873667|ref|YP_003842300.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307686609|ref|ZP_07629055.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302576524|gb|ADL50536.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 116 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ I R GM+QE+LG G++ + K E V +I++V ++ Sbjct: 5 NIGEVISGLRKQKGMTQEELGNMSGLSRVIIAKIENNQRAVSLEEAVNIAKVFAIDVATL 64 Query: 74 F 74 + Sbjct: 65 Y 65 >gi|255102292|ref|ZP_05331269.1| putative phage DNA-binding protein [Clostridium difficile QCD-63q42] Length = 254 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R ++Q +L E I+ + YE L +++ L+ + Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISDISRNALINYENDKRIPNIDTLSKLAKALKIEKTI 60 Query: 73 F-FDVSPTVCSD 83 F FD+ V ++ Sbjct: 61 FYFDIENEVITN 72 >gi|167588649|ref|ZP_02381037.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ubonensis Bu] Length = 180 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 2/94 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSER 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S G + F I Sbjct: 64 HNRELITVTRADERAAPGSRSAGH--AQAFESIA 95 >gi|167622459|ref|YP_001672753.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352481|gb|ABZ75094.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 68 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I G ++R +R LG+SQ+KL I + E+G + + ++EVLE + Sbjct: 6 IQFGTKLRDKRKALGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLECDV 63 >gi|161598515|ref|YP_001573896.1| hypothetical protein pEDINA_p24 [Staphylococcus aureus] gi|27531748|dbj|BAC54516.1| unnamed protein product [Staphylococcus aureus] gi|270055238|gb|ACZ58731.1| transcriptional regulator, putative [Staphylococcus aureus] gi|270055460|gb|ACZ58953.1| transcriptional regulator, putative [Staphylococcus aureus] gi|282166034|gb|ADA80054.1| transcriptional regulator, putative [Staphylococcus aureus] Length = 66 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R G+SQ L + ++ Q + E ++ VLE+ ++ F Sbjct: 2 NKIKEFRKKKGLSQLDLARNILVSRQTINLIENNKYNPSLDLCLKLASVLETDLNSLF 59 >gi|15609154|ref|NP_216533.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|148661831|ref|YP_001283354.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|167970453|ref|ZP_02552730.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|306776255|ref|ZP_07414592.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306972365|ref|ZP_07485026.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307080074|ref|ZP_07489244.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307084649|ref|ZP_07493762.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|2896754|emb|CAA17231.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148505983|gb|ABQ73792.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|308215287|gb|EFO74686.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308358155|gb|EFP47006.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308362088|gb|EFP50939.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308365757|gb|EFP54608.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] Length = 346 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G + + R G++Q +L E +G+T + +YE G + ++E+L Sbjct: 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGV 57 >gi|296535336|ref|ZP_06897539.1| helix-turn-helix domain protein [Roseomonas cervicalis ATCC 49957] gi|296264335|gb|EFH10757.1| helix-turn-helix domain protein [Roseomonas cervicalis ATCC 49957] Length = 291 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+++R R+ G+ E++ LG++ + +YEKG + ++ ++E+L+ Sbjct: 6 IGQQLRAYRLESGLRAEEIAARLGVSRAALYRYEKGEV-IKLDTIRRLAELLKISP 60 >gi|241889648|ref|ZP_04776946.1| XRE family transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863270|gb|EER67654.1| XRE family transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 218 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ + + LG+T +EKG L ++ ++F Sbjct: 5 NRLKSLRTKQKVSQTAVAKHLGVTRAAYNSWEKGKYIPNKKNLDELALYFNVETTYF 61 >gi|229551472|ref|ZP_04440197.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540781|ref|YP_003175280.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|229315155|gb|EEN81128.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257152457|emb|CAR91429.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] Length = 70 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R ++Q+ L + L ++ Q V E G +S V PI F Sbjct: 3 NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIFID 62 Query: 77 SPTVC 81 Sbjct: 63 ESADS 67 >gi|226949688|ref|YP_002804779.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226842029|gb|ACO84695.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 82 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R ++Q+++ L IT V YE G+ S L I++ + + Sbjct: 6 RLKGLREDRDLTQDQIANILKITRSAVANYENGIREPDISLLVKIADYFNISLDYL 61 >gi|217979885|ref|YP_002364032.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217505261|gb|ACK52670.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 477 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R RR L + Q + LGI+ + + E + A+ L ++ VL+ ++ +D Sbjct: 7 GQILRRRREELSLPQALVARRLGISPSYLNQIESDQRPLTAAILVEVTRVLKLQVADLYD 66 Query: 76 VSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 P + E + + + S G +L + VR +++L S E++Y Sbjct: 67 DGPERLAANLREMLSDPLFEHASVS-GREL-KAISAAAPHLVR-AMLDLHSSYRRMEERY 123 Query: 134 RTIEEECM 141 R +++ Sbjct: 124 RGLDDALR 131 >gi|182419511|ref|ZP_02950762.1| conserved domain protein [Clostridium butyricum 5521] gi|237666225|ref|ZP_04526212.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376641|gb|EDT74214.1| conserved domain protein [Clostridium butyricum 5521] gi|237658315|gb|EEP55868.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 73 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I++ R L M+Q++L E +G++ Q + EKG + I +VL + F Sbjct: 7 IKVARAQLDMTQKELAERVGVSRQTMNAIEKGEYNPTIKLCRSICKVLGKKLDDLF 62 >gi|254302250|ref|ZP_04969608.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322442|gb|EDK87692.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 94 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K +R RR L ++QE+ + G++F ++++E + L I+ Sbjct: 7 NIKTPKEIQLEIAKNVRKRRKELKLTQEEFSKKSGVSFGSIKRFEN-TGEISLFSLIKIA 65 Query: 64 EVLES 68 +LE Sbjct: 66 IILEC 70 >gi|120405829|ref|YP_955658.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958647|gb|ABM15652.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 97 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R MS+ +L E + + Q V E+G + I EV + P+ F Sbjct: 14 NRIGVLRAERRMSRAQLAEQIDVNPQTVGALERGDHYPSLDLAFRICEVFDLPVEAVFSR 73 Query: 77 SP 78 P Sbjct: 74 KP 75 >gi|28379010|ref|NP_785902.1| prophage Lp2 protein 10 [Lactobacillus plantarum WCFS1] gi|28271848|emb|CAD64753.1| prophage Lp2 protein 10 [Lactobacillus plantarum WCFS1] Length = 75 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R + ++QE+L ++ VQ E G + + +S+ L + + Sbjct: 4 KLKYYREAMNLTQEELARHAKVSVAMVQSMENGRRKGSTDTILKLSDALNVTVDDLLRGN 63 Query: 78 PTVCSD 83 S Sbjct: 64 NMTISH 69 >gi|260844424|ref|YP_003222202.1| putative phage regulatory protein CI [Escherichia coli O103:H2 str. 12009] gi|13360529|dbj|BAB34492.1| putative regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|257759571|dbj|BAI31068.1| predicted phage regulatory protein CI [Escherichia coli O103:H2 str. 12009] gi|320188717|gb|EFW63377.1| Putative regulatory protein [Escherichia coli O157:H7 str. EC1212] gi|323157248|gb|EFZ43369.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|326338913|gb|EGD62729.1| Putative regulatory protein [Escherichia coli O157:H7 str. 1125] gi|326344317|gb|EGD68076.1| Putative regulatory protein [Escherichia coli O157:H7 str. 1044] Length = 125 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F + Sbjct: 3 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVSGHPLHWFL-LP 61 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P C I + + + P +L + F + + + E+ Sbjct: 62 PEECEQIFTPDTMKIG----PRQRELLQAFSAFPEEDQEKMLQEI 102 >gi|25010546|ref|NP_734941.1| hypothetical protein gbs0475 [Streptococcus agalactiae NEM316] gi|23094899|emb|CAD46119.1| Unknown [Streptococcus agalactiae NEM316] Length = 112 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ R G++Q++L + + + Q + +EKG ++ ++ V + Sbjct: 4 EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYL 60 >gi|304322047|ref|YP_003855690.1| hypothetical protein PB2503_12539 [Parvularcula bermudensis HTCC2503] gi|303300949|gb|ADM10548.1| hypothetical protein PB2503_12539 [Parvularcula bermudensis HTCC2503] Length = 486 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPIS 71 R+ G++Q+ L E +G+ QQ+Q+YE +RL I + L IS Sbjct: 86 KARIASGLTQQDLAERVGLKPQQIQRYEAERYAGASLTRLIEIVKALGVRIS 137 >gi|327537762|gb|EGF24467.1| transcription regulator [Rhodopirellula baltica WH47] Length = 347 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R LG+SQ +L G++ + VQ E G N V ++ I+ L + Sbjct: 6 AQLKQARQSLGLSQLQLAMRAGVSSRTVQFAESGQN-VSIGTMRRIAGALGMQADQLVRI 64 Query: 77 SPTVCSDISSEEN-NVMDFISTPDGLQ 102 P D +E +V D + G Sbjct: 65 DPGTGQDGFAELPWSVADKFRSNRGFD 91 >gi|258593006|emb|CBE69317.1| putative transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 104 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +++ V I R MSQ +L + L Q V + E+G V L I+ L Sbjct: 34 DIELRVALEITRAREARKMSQRELADALKTKQQTVSRIERGAQNVTIETLDKIARALG 91 >gi|300780095|ref|ZP_07089951.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300534205|gb|EFK55264.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 73 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P +R R +SQ +L + +G++ Q V EKG I L Sbjct: 7 PHP------NMVRQWRRWHELSQAELAQRVGVSRQTVANIEKGNYSPSVHLALDICRELG 60 Query: 68 SPISFFF 74 + F Sbjct: 61 KTVEEVF 67 >gi|229493241|ref|ZP_04387033.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229319972|gb|EEN85801.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 268 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++VG ++ R ++Q L G++ + + E G ++ + H+SE L+ P+ Sbjct: 6 MDVGSELKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLDVPL 63 >gi|228939078|ref|ZP_04101675.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971956|ref|ZP_04132576.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978567|ref|ZP_04138942.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228781166|gb|EEM29369.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228787773|gb|EEM35732.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820606|gb|EEM66634.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939578|gb|AEA15474.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 112 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++ R G + +++ + +G YE + A L +++V ++ F Sbjct: 1 MNIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADVFDTTADF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST----PDGLQLNRYFIQIDDVKVRQKI 119 + +S NV DF+ DG+++ +I ++ +RQ + Sbjct: 61 IL----GRTDNPNSLNFNVKDFLDQGRLHSDGVEITDEQAEIANILLRQLL 107 >gi|83589149|ref|YP_429158.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572063|gb|ABC18615.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 78 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +S +KL + LG+ + + ++EKG+ L I++ + + + Sbjct: 12 RLKFLREQHNLSTQKLADALGLKSKGAITQFEKGIISPSVDTLISIADFFDVSLDYL 68 >gi|17547868|ref|NP_521270.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430173|emb|CAD16858.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 113 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P P+ +G+RI+L R SQE L + + E+G+ L +I Sbjct: 13 STSRPAPILSALGERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIETLANIC 72 Query: 64 EVLESPISFFFDVSPTVC 81 L ++ F + Sbjct: 73 YALNVTLAELFGPMDGIS 90 >gi|294102727|ref|YP_003554585.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293617707|gb|ADE57861.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 114 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 4/97 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R R G++Q ++ L + + K EK + L+ + + P+ + Sbjct: 7 IGQRFNELRSKSGLTQGQMAAYLDVDQSYISKCEKNERQFSIDILEKAASLFGCPVEYIV 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ + + T + L+ +I Sbjct: 67 GLTSEFSPMSIAFRAKSV----TREDLEAIAALNKIA 99 >gi|289661956|ref|ZP_06483537.1| phage-related protei [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 143 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 17/109 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGKR++ R L ++Q+++ + GI+ +EK N G + L + I + Sbjct: 1 MTVGKRLKEERKRLRLTQQEMADACGISKWAQLYFEKDQNMPGGAYLLA-AHARGVDIVY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + E+ +D P L F + +VR ++ Sbjct: 60 -----------VLLEQRTKLD----PSEAALVSAF-RAAPQEVRAALLA 92 >gi|282167052|gb|ADA81068.1| DNA-binding protein, putative [Staphylococcus aureus] Length = 182 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R R MS + L + ++ + + EKG S L I+E L P Sbjct: 3 YINEIIATNLRKIRNQKRMSLDDLSKLTSVSKAVLFQIEKGTTNPTISTLWKIAEGLNIP 62 Query: 70 IS 71 +S Sbjct: 63 LS 64 >gi|229014216|ref|ZP_04171337.1| hypothetical protein bmyco0001_46210 [Bacillus mycoides DSM 2048] gi|229062694|ref|ZP_04200003.1| hypothetical protein bcere0026_47600 [Bacillus cereus AH603] gi|228716664|gb|EEL68361.1| hypothetical protein bcere0026_47600 [Bacillus cereus AH603] gi|228747170|gb|EEL97052.1| hypothetical protein bmyco0001_46210 [Bacillus mycoides DSM 2048] Length = 81 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ +P+ Sbjct: 6 DMKLQNRVREFRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVE 65 Query: 72 FFF 74 F Sbjct: 66 EIF 68 >gi|255323959|ref|ZP_05365085.1| transcriptional regulator, HTH_3 family [Corynebacterium tuberculostearicum SK141] gi|311739970|ref|ZP_07713804.1| HTH_3 family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|255299139|gb|EET78430.1| transcriptional regulator, HTH_3 family [Corynebacterium tuberculostearicum SK141] gi|311305043|gb|EFQ81112.1| HTH_3 family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 87 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK P+ R+R+ R MS+ +L E + + Q V E+G + Sbjct: 1 MSPKKKPSAPIY----NRVRVLRAERDMSRAQLAEAIDVNPQTVGALERGDHSPSLDLAF 56 Query: 61 HISEVLESPISFFF 74 + EV + P+ F Sbjct: 57 RVCEVFDLPVEAIF 70 >gi|24379248|ref|NP_721203.1| hypothetical protein SMU.790 [Streptococcus mutans UA159] gi|24377163|gb|AAN58509.1|AE014920_7 conserved hypothetical protein [Streptococcus mutans UA159] Length = 79 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E + +T + V K+E+ ++ + + ++E+ E + Sbjct: 6 LGMIISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLSFPDINSIPKLAEIFEVSVDDLM 65 Query: 75 DVSPTVCSDIS 85 V I Sbjct: 66 QVKTNTKETIG 76 >gi|77404491|ref|YP_345067.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|77019872|dbj|BAE46247.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 89 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GKRIR+ R+ GM+Q +L + G+ +++ EKG AS+L I+ V P+S Sbjct: 12 VELGKRIRIERVERGMAQLELVKRTGLADSTIRRIEKGTRDASASQLHTIAGVFGMPLS 70 >gi|150017031|ref|YP_001309285.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903496|gb|ABR34329.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 112 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N N +D +GKRI+ R G+++EK E + I+ + + E G I+ Sbjct: 3 NLNNINYID--IGKRIKAERERNGLTREKFSELVSISPTYLSQIELGQRHPSLPTTIKIA 60 Query: 64 EVLESPISFF 73 L + F Sbjct: 61 STLHISLDFL 70 >gi|15841500|ref|NP_336537.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31793197|ref|NP_855690.1| regulatory protein [Mycobacterium bovis AF2122/97] gi|121637901|ref|YP_978124.1| regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148823233|ref|YP_001287987.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|215404173|ref|ZP_03416354.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215411712|ref|ZP_03420508.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215427378|ref|ZP_03425297.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215430939|ref|ZP_03428858.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215446234|ref|ZP_03432986.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218753734|ref|ZP_03532530.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219557982|ref|ZP_03537058.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224990395|ref|YP_002645082.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798930|ref|YP_003031931.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254232188|ref|ZP_04925515.1| hypothetical protein TBCG_01970 [Mycobacterium tuberculosis C] gi|254364835|ref|ZP_04980881.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|260186992|ref|ZP_05764466.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260201123|ref|ZP_05768614.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260205300|ref|ZP_05772791.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289443512|ref|ZP_06433256.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289447635|ref|ZP_06437379.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289554202|ref|ZP_06443412.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289570123|ref|ZP_06450350.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289574694|ref|ZP_06454921.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289746033|ref|ZP_06505411.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289750599|ref|ZP_06509977.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289754123|ref|ZP_06513501.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289758134|ref|ZP_06517512.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|289762171|ref|ZP_06521549.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294996956|ref|ZP_06802647.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297634592|ref|ZP_06952372.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297731580|ref|ZP_06960698.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298525519|ref|ZP_07012928.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306780036|ref|ZP_07418373.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306784784|ref|ZP_07423106.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306789142|ref|ZP_07427464.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306793476|ref|ZP_07431778.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306797860|ref|ZP_07436162.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306803740|ref|ZP_07440408.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306808314|ref|ZP_07444982.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306968138|ref|ZP_07480799.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|313658913|ref|ZP_07815793.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|13881742|gb|AAK46351.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31618789|emb|CAD96893.1| hypothetical regulatory protein [Mycobacterium bovis AF2122/97] gi|121493548|emb|CAL72022.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601247|gb|EAY60257.1| hypothetical protein TBCG_01970 [Mycobacterium tuberculosis C] gi|134150349|gb|EBA42394.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148721760|gb|ABR06385.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224773508|dbj|BAH26314.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253320433|gb|ACT25036.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289416431|gb|EFD13671.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289420593|gb|EFD17794.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289438834|gb|EFD21327.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289539125|gb|EFD43703.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289543877|gb|EFD47525.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289686561|gb|EFD54049.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289691186|gb|EFD58615.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289694710|gb|EFD62139.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289709677|gb|EFD73693.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713698|gb|EFD77710.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|298495313|gb|EFI30607.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308327075|gb|EFP15926.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308330516|gb|EFP19367.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308334351|gb|EFP23202.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308338152|gb|EFP27003.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308341844|gb|EFP30695.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308345332|gb|EFP34183.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308349633|gb|EFP38484.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308354263|gb|EFP43114.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|323719420|gb|EGB28548.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326903630|gb|EGE50563.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328458685|gb|AEB04108.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 346 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G + + R G++Q +L E +G+T + +YE G + ++E+L Sbjct: 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGV 57 >gi|304314800|ref|YP_003849947.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588259|gb|ADL58634.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 190 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R ++ E+L E G+ + ++K E+G + L IS L + Sbjct: 6 VGERIKQLRDNQNITLEELAERSGVNRELIKKIEEGDILPSLTPLIKISRTLGVRLGTLL 65 Query: 75 DV 76 D Sbjct: 66 DD 67 >gi|229051388|ref|ZP_04194893.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676] gi|228721957|gb|EEL73397.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676] Length = 112 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R G +Q +LG+ +G+ + E + +EVL + Sbjct: 3 GDRVKQLRKSKGWTQGELGDAVGLKKATISLIENNKRDRSERSVSVFAEVLGCTSDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDF 94 S + +F Sbjct: 63 FSDDPQLNGEQHSRLKQEF 81 >gi|159039226|ref|YP_001538479.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|159039277|ref|YP_001538530.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918061|gb|ABV99488.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] gi|157918112|gb|ABV99539.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 397 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR--LQHISEVLESPIS 71 +G R+ R I GM+Q L +G+T + E G R A R L ++ L+ I+ Sbjct: 4 YIGLRVARWRDISGMTQHDLASAVGVTPAYISMLENGR-RPVAKRSLLIALASALQVSIT 62 Query: 72 FF 73 Sbjct: 63 DL 64 >gi|154483623|ref|ZP_02026071.1| hypothetical protein EUBVEN_01327 [Eubacterium ventriosum ATCC 27560] gi|149735533|gb|EDM51419.1| hypothetical protein EUBVEN_01327 [Eubacterium ventriosum ATCC 27560] Length = 115 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 29/58 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +IR +R+ +G++QE L + + E ++V + L +I + + + + + Sbjct: 18 ISNKIRRKRVSMGLTQEYLATAADVNVSHISNIENCHSKVSLNTLVYICKAMNTTLDY 75 >gi|170721030|ref|YP_001748718.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169759033|gb|ACA72349.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 183 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 12/103 (11%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ +L + + + + E+G+++ + L ISE L P ++F+ S Sbjct: 12 IRGLRKHRGLTLGELAIKVKRSLGFLSQVERGLSQPTVADLTAISEALHVPTTYFYQASQ 71 Query: 79 TVCSDISSEENN---------VMDFISTPDGLQLNRYFIQIDD 112 D + + D + +P LN F ++ Sbjct: 72 PRELDWVTRPGERRTIYYAEGISDVLVSP---TLNGSFAMLES 111 >gi|312862584|ref|ZP_07722825.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311101844|gb|EFQ60046.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 60 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +++ R+ ++Q+ L + +G++ Q + EKG I + L+ Sbjct: 5 KLKSARVAKDLTQQGLADAIGVSRQTISPIEKGDYNPTMDLYIAICKTLD 54 >gi|295838009|ref|ZP_06824942.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74] gi|295826798|gb|EFG65058.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74] Length = 120 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 37/84 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L + Sbjct: 9 LGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 68 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + SE ++ P Sbjct: 69 VQAGILDERDRSEAGTRAVLLADP 92 >gi|291485970|dbj|BAI87045.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 152 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+ IRL R G S +L G++ + K E+GV+ L+ +S LE ++ Sbjct: 2 IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTEL 61 Query: 74 FDVSPTVCSDISSEENN 90 FD + IS E Sbjct: 62 FDAETMMYEKISGGEEE 78 >gi|289449377|ref|YP_003475735.1| Xre family toxin-antitoxin system antitoxin protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183924|gb|ADC90349.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 128 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++R R + ++Q +L E L I+ + + YE L I +S+ Sbjct: 1 MTFGEKLRELRRLNHITQAELAEELKISLRALVYYENNHRFPPRDTLVAIGNFFHVNVSY 60 Query: 73 FFDV 76 D Sbjct: 61 LVDD 64 >gi|260911956|ref|ZP_05918520.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon 472 str. F0295] gi|260633903|gb|EEX52029.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon 472 str. F0295] Length = 71 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++I R +SQ +LG+ G+ + + E G + VG L I+ L + F Sbjct: 13 IGQKIASMRQEAKLSQAELGKKCGLERFHISRIESGRHSVGLDTLAAIARALGKTLDF 70 >gi|257414340|ref|ZP_04746003.2| putative helix-turn-helix protein [Roseburia intestinalis L1-82] gi|257200419|gb|EEU98703.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] Length = 121 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 34/73 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I +GKR+R R+ + + + ++ + LG+T + +K E GV + ++ + + Sbjct: 19 NIQIGKRLREARLNMNLEKSEIADVLGVTVEHYRKLEAGVTGISVDKVLTLYHKYGIDPT 78 Query: 72 FFFDVSPTVCSDI 84 + + D Sbjct: 79 YLITGESSNIKDF 91 >gi|258515474|ref|YP_003191696.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779179|gb|ACV63073.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++IR R G + ++L ++F + + E+G + ++ ++ VL S + Sbjct: 5 GEQIRALREERGYTLQELARRANLSFSYLSEIERGSKKPSLKTIEKLAAVLNVAKSQLVE 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 +D N + + L L Sbjct: 65 ND---LNDAGLTLGNKIRMLRNEKALSL 89 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 10/104 (9%) Query: 5 KKIPNPVDIN----------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 KKI +D++ +G +++ R G +Q KL E G+T + + E+ + Sbjct: 119 KKISESLDVSASVLMSYEGSLGNKLKALREKQGYTQAKLAELAGVTAGLIGQIEQSKVQP 178 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 L+ +S VL +F V I+ + + + P Sbjct: 179 SLKTLEKLSGVLGISACYFIMEPGAVEQIINMMTPELREMLLDP 222 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G +IR+ R +S ++L I+ + + E+G + L+ ISE L+ Sbjct: 68 NDAGLTLGNKIRMLRNEKALSLQELSTTSEISLSYLSEIERGTIYPSLNTLKKISESLDV 127 Query: 69 PISFFFDVSPTVCS 82 S ++ + Sbjct: 128 SASVLMSYEGSLGN 141 >gi|284991477|ref|YP_003410031.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064722|gb|ADB75660.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 195 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 10/118 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + + V VG R+R R+ G + +L E GI+ + + E G R L Sbjct: 1 MADDETTDAVLTAVGPRLRALRVRRGRTLAQLSEETGISVSTLSRLESGQRRPTLELLLP 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDV 113 ++ P+ +P V +++ L L R F Q+ Sbjct: 61 LARSHRVPLDELV-GAPETGDPRVHPRPVVHHGVTS---LPLTRRPGGVQAFKQVYPP 114 >gi|184200390|ref|YP_001854597.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201] gi|183580620|dbj|BAG29091.1| putative Xre family DNA-binding protein [Kocuria rhizophila DC2201] Length = 71 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I +G ++R R+ G++QE L E LG+T + E+G + + ++E L Sbjct: 1 MATSLRITLGTQVRKVRLSRGLTQEVLAERLGVTPRYFAGIERGERNLTLDSVDALAEQL 60 Query: 67 ES 68 Sbjct: 61 GV 62 >gi|148271563|ref|YP_001221124.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829493|emb|CAN00406.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 167 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G RI R G +QE+L E GIT + VQ+ E G N L ++ L + Sbjct: 3 GTRIVDLRTQRGWTQERLAEASGITVRTVQRLEAG-NDASLDTLTRVATALAVQVGDL 59 >gi|146320084|ref|YP_001199795.1| transcriptional regulator PlcR [Streptococcus suis 98HAH33] gi|145690890|gb|ABP91395.1| transcriptional regulator PlcR, putative [Streptococcus suis 98HAH33] Length = 173 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPIS 71 + + KR + RR LG +Q++L E GI Q + + EK + L +S+ L+ + Sbjct: 8 MILSKRFKNRRKELGFTQKELAE--GICEQSLISRVEKLGVAPTSDILFALSQRLQVSMD 65 Query: 72 FFFDVS 77 +FFD S Sbjct: 66 YFFDES 71 >gi|10954908|ref|NP_053328.1| hypothetical protein pTi-SAKURA_p090 [Agrobacterium tumefaciens] gi|6498261|dbj|BAA87713.1| tiorf88 [Agrobacterium tumefaciens] Length = 163 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 MS L + + + E G L I+ LE P SF F+ + + I ++ Sbjct: 1 MSLSALATKANLAKSTLSELEAGKGNPSIETLWAIASALEIPFSFLFESASSHSQLIRAD 60 Query: 88 ENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKIIEL 122 + S+ + LN+ R+ + L Sbjct: 61 AGVALAADSSDFRTVLLNKC-----PPASRRDLYRL 91 >gi|15081541|ref|NP_150054.1| transcription regulator phage-related [Clostridium perfringens str. 13] gi|15076774|dbj|BAB62499.1| probable transcription regulator phage-related [Clostridium perfringens str. 13] Length = 367 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R ++QE L + +G+ + YE G L +S+++ I + Sbjct: 11 ENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNIFVLITLSKLMNCSIDSLIGL 70 Query: 77 SPTVCSDISSEE 88 S I S + Sbjct: 71 SNEKIIPIPSTD 82 >gi|330837028|ref|YP_004411669.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748931|gb|AEC02287.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374] Length = 191 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ RM ++ L E G++ + + E + + IS+ L + Sbjct: 8 IGKNIQKLRMSRNLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKISKGLGVELQDVL 67 Query: 75 DVSP 78 D+ Sbjct: 68 DIDD 71 >gi|325273200|ref|ZP_08139486.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101665|gb|EGB99225.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 182 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + P+S Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLS--GIPMSM 58 Query: 73 --FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ + I + + ++D ++L Sbjct: 59 VEFFSVELEAQSPAQIVYKAHELIDISDGAVTMKLV 94 >gi|323525513|ref|YP_004227666.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323382515|gb|ADX54606.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 84 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ +R R G+SQE L + V E G + + I L+ S F Sbjct: 7 VGEVLRALRRRKGLSQEALAHAAQMERNYVSLIELGRHSPSVRVIWKICAALDVTPSAFL 66 Query: 75 DVSPTVCSD 83 + + Sbjct: 67 AAAEARLGE 75 >gi|300697135|ref|YP_003747796.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299073859|emb|CBJ53386.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 126 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ I VG RI+ R SQE+L + + E+G+ L +I L Sbjct: 36 PILIAVGARIKQCRHAAEKSQERLAFEASVDRTYISSIERGIANPSVETLANICYALNVT 95 Query: 70 ISFFF 74 ++ F Sbjct: 96 LAELF 100 >gi|302544073|ref|ZP_07296415.1| HTH_3 family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461691|gb|EFL24784.1| HTH_3 family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 82 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+ + R +S+++L E +G +Q + E+G I++ E P+ Sbjct: 4 QVHNRLAMVRAERKVSRQRLAEVVGAHYQTIGYIERGQYNPSLDLALKIAKFFELPVEAL 63 Query: 74 FDVSP 78 F + P Sbjct: 64 FSLEP 68 >gi|302531671|ref|ZP_07284013.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] gi|302440566|gb|EFL12382.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] Length = 193 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 14/110 (12%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V + R+R R G+S +L GI+ + + E G + L I+ L Sbjct: 8 DSVLEQIAPRLRRARDHRGVSLAELSRSTGISTSTLSRLESGQRKPSLELLLPITAALGI 67 Query: 69 PISFFFD--------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P FD V P V + + V+ +S G +L R + QI Sbjct: 68 P----FDEIVAAPRIVDPRVPQQAAKRDGRVLIPLSRHQG-EL-RAYKQI 111 >gi|251779168|ref|ZP_04822088.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083483|gb|EES49373.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 80 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ R G+SQ +L + L I+ + E G L I+ LE Sbjct: 8 LKNIRENKGISQRQLAKKLNISQGYISSIENGKKSPTIRMLYRIANALEI 57 >gi|229020269|ref|ZP_04177038.1| hypothetical protein bcere0030_47600 [Bacillus cereus AH1273] gi|229026493|ref|ZP_04182848.1| hypothetical protein bcere0029_47690 [Bacillus cereus AH1272] gi|228734801|gb|EEL85441.1| hypothetical protein bcere0029_47690 [Bacillus cereus AH1272] gi|228741022|gb|EEL91251.1| hypothetical protein bcere0030_47600 [Bacillus cereus AH1273] Length = 73 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ +LG+ +G + Q + E+G I+++ +P+ F + Sbjct: 5 NRVREFRAKHRLSQGELGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVEEIFML 64 Query: 77 SPTVCSDIS 85 D Sbjct: 65 VEGEDGDGE 73 >gi|206559513|ref|YP_002230274.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198035551|emb|CAR51431.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 107 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G++IR R G++ ++L + + + + E K R A R+ I++ L +F Sbjct: 4 LGEKIRTLRKRQGLTLDQLALQVSASKSSIWELENKEKARPSADRIDAIAQALGVTSAFL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 D + S ++E + + Sbjct: 64 LDDTQAEPSRKVADEAFFRKYEQLDE 89 >gi|187777958|ref|ZP_02994431.1| hypothetical protein CLOSPO_01550 [Clostridium sporogenes ATCC 15579] gi|187774886|gb|EDU38688.1| hypothetical protein CLOSPO_01550 [Clostridium sporogenes ATCC 15579] Length = 64 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R LG QE L + +T Q + E ++ LE+ + F Sbjct: 3 NRIKEFRKRLGYRQEDLAIKMNVTRQTINAIENNKYNPTLELAMKLARFLETSVEELF 60 >gi|124004789|ref|ZP_01689633.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123989912|gb|EAY29441.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 123 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + +G+++R R + SQE + E LG++ Q E + + RL+ I+++LE ++ Sbjct: 1 MKIGEKVRKLRELRDFSQEYMAEQLGMSQQNYSAIENNQDEDISLKRLKRIAQILEIQMN 60 Query: 72 FFFDVSP 78 Sbjct: 61 DLLSFDE 67 >gi|322805033|emb|CBZ02593.1| putative transcriptional regulatory protein [Clostridium botulinum H04402 065] Length = 182 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ R +S +L E G++ + + EKG + + + I+ L+ Sbjct: 7 ISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQV 60 >gi|322374109|ref|ZP_08048643.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321277075|gb|EFX54146.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 69 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-- 71 ++ +I+ R +SQ +L + +G+T Q + EKG I+ I Sbjct: 4 HMETKIQELRKANKISQAELADEMGVTRQTIISLEKGRYNASLELAFKIARYFGKTIEEV 63 Query: 72 FFFDVS 77 F F+ Sbjct: 64 FLFEED 69 >gi|321312988|ref|YP_004205275.1| transcriptional regulator [Bacillus subtilis BSn5] gi|320019262|gb|ADV94248.1| transcriptional regulator [Bacillus subtilis BSn5] Length = 152 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+ IRL R G S +L G++ + K E+GV+ L+ +S LE ++ Sbjct: 2 IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTEL 61 Query: 74 FDVSPTVCSDISSEENN 90 FD + IS E Sbjct: 62 FDAETMMYEKISGGEEE 78 >gi|302672203|ref|YP_003832163.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396676|gb|ADL35581.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 209 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 8/134 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI M+Q++ + GI + + K G+ ++ I L+ + Sbjct: 1 MTIGQRIFYLLEEKHMTQKEFSDRTGIATTTISDWRKKNTNPGSDKIMSICAALDVTPEY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV--RQKIIELVRSIVSSE 130 T SD + ++ T + +L F +D+ R ++E R I + Sbjct: 61 LLSGV-TEDSDRGRNIDYMVIPTGTEE-RELIEIF---NDMNFVDRAHVMEYARKISERK 115 Query: 131 KKY-RTIEEECMVE 143 +Y T + + MV+ Sbjct: 116 SRYCETAKAKSMVK 129 >gi|295106952|emb|CBL04495.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 75 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGI--TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK IR R+ G+SQ L +G + + + E+G ++G +L I++ L + Sbjct: 12 LGKSIREERLAQGLSQRTLAGMIGQPNSHTYITRVEQGKIKIGLEQLGRIADALGVEVRD 71 Query: 73 FFD 75 D Sbjct: 72 LID 74 >gi|295095052|emb|CBK84142.1| Predicted transcriptional regulators [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 182 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 7/118 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + P+ + + K + R+ G+S ++ GI + + E G L + L Sbjct: 1 MTQPISV-IAKSLVRERLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVAL 59 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P + + P E V+ + + + L R+ I L+ Sbjct: 60 DIPFARLLEPQQPVTQVIRRGEGTKVVAGQANYEAILLAAC-----PPGARRDIYLLL 112 >gi|283769302|ref|ZP_06342202.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104078|gb|EFC05461.1| DNA-binding protein [Bulleidia extructa W1219] Length = 685 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R LG +Q ++ L I+ + +E G + S++Q ++ + P+ D Sbjct: 7 NKLRDLRKSLGYAQGEMASRLDISVKDYMNWENGNSLPAFSQIQKMAILFNIPVELLMDN 66 Query: 77 SPTVCSDI 84 + D+ Sbjct: 67 RKEISQDL 74 >gi|262282360|ref|ZP_06060128.1| predicted protein [Streptococcus sp. 2_1_36FAA] gi|262261651|gb|EEY80349.1| predicted protein [Streptococcus sp. 2_1_36FAA] Length = 96 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK+++L R G SQ ++ E LG T Q + +E + + L +++ + + Sbjct: 4 LGKQLKLLREQKGYSQNQISEYLGTTRQTISNWENDKTIIDSHSLIRLADFYQISLD 60 >gi|260222943|emb|CBA33015.1| hypothetical protein Csp_B16920 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 100 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VG+RI+ R +SQE L E GI + + E G L +++ L Sbjct: 36 RIVGQRIKGLRQEAELSQEILSERCGIYRTYLSRIESGSANPTLLVLVALADSLGV 91 >gi|260682992|ref|YP_003214277.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260686590|ref|YP_003217723.1| putative phage regulatory protein [Clostridium difficile R20291] gi|260209155|emb|CBA62369.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260212606|emb|CBE03618.1| putative phage regulatory protein [Clostridium difficile R20291] Length = 135 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 19/130 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R ++Q KL + L F+ + KYE G + L I++ + Sbjct: 7 LGKRIAYLRNSKKLTQRKLMDIL--KFENLGKYETGDRKPNCDILMSIADYFNVTTDWLL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V + S +E + ++ + + ++ I+ L R + +K Sbjct: 65 YGKEKVNVNSSVKE--------DKED------YLHVTNDEM--MILNLYRQLNERDKIKI 108 Query: 135 T-IEEECMVE 143 I E + E Sbjct: 109 EGILELKISE 118 >gi|226947977|ref|YP_002803068.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] gi|226842052|gb|ACO84718.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] Length = 182 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ R +S +L E G++ + + EKG + + + I+ L+ Sbjct: 7 ISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQV 60 >gi|212636884|ref|YP_002313409.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212558368|gb|ACJ30822.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 182 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGASLKTVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVE 60 Query: 73 FFDVSPTVCSD 83 FF + S+ Sbjct: 61 FFSIEDETVSE 71 >gi|187939539|gb|ACD38687.1| hypothetical helix-turn-helix protein [Pseudomonas aeruginosa] Length = 132 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R LGM+Q L ++ YEKG A L ++ + + Sbjct: 22 IGERLKEERERLGMNQTDFAAQLNVSKNSQYNYEKGERSPDALYLSA-ADAFGVDVLYVI 80 Query: 75 DV--SPTVCSDISSEENNVMDFIST 97 P +S E +V+ ++++ Sbjct: 81 TGRRLPAELDALSQSELDVLGYMTS 105 >gi|187777825|ref|ZP_02994298.1| hypothetical protein CLOSPO_01417 [Clostridium sporogenes ATCC 15579] gi|187774753|gb|EDU38555.1| hypothetical protein CLOSPO_01417 [Clostridium sporogenes ATCC 15579] Length = 78 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ R +S +L E G++ + + EKG + + + I+ L+ Sbjct: 7 ISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQV 60 >gi|170756638|ref|YP_001780356.1| hypothetical protein CLD_0038 [Clostridium botulinum B1 str. Okra] gi|169121850|gb|ACA45686.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 182 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ R +S +L E G++ + + EKG + + + I+ L+ Sbjct: 7 ISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQV 60 >gi|118592886|ref|ZP_01550274.1| DNA-binding protein, putative [Stappia aggregata IAM 12614] gi|118434420|gb|EAV41073.1| DNA-binding protein, putative [Stappia aggregata IAM 12614] Length = 191 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 6/94 (6%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + +VG R+R R G SQ +L + G+T + + E S L+ Sbjct: 3 NTLNTDDFSRDVGLRLRAIREAHGYSQRELAKRAGVTNGFISQLEAAKINTSLSALK--- 59 Query: 64 EVLE-SPI--SFFFDVSPTVCSDISSEENNVMDF 94 VL+ PI S FF P + + + + Sbjct: 60 RVLDGIPIGLSEFFAYEPERQEQVFFGADELTEI 93 >gi|117165275|emb|CAJ88837.1| putative transcriptional regulators [Streptomyces ambofaciens ATCC 23877] Length = 192 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P+PVD + R+ R G S +L E G++ + + E+ AS L Sbjct: 1 MRDTDDAPDPVDARLAARLAELRAERGWSLGELAERSGVSRSTLSRAERAETSPTASLLN 60 Query: 61 HISEVLESPIS 71 + V +S Sbjct: 61 RLCAVYGRTMS 71 >gi|331266049|ref|YP_004325679.1| transcriptional repressor, putative [Streptococcus oralis Uo5] gi|326682721|emb|CBZ00338.1| transcriptional repressor, putative [Streptococcus oralis Uo5] Length = 69 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++L R+ ++Q L E +G+T Q + E G Q I L + F Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLFLCQSICRCLGKTLDQLF 62 >gi|284008860|emb|CBA75663.1| transcriptional regulator [Arsenophonus nasoniae] Length = 54 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 K + +G++I+ R GM+ ++L LGI+ QQ+ +YE G+ Sbjct: 2 KRRQEIACLLGRKIKKIRKYNGMTGKELSVNLGISQQQLSRYENGI 47 >gi|254449819|ref|ZP_05063256.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198264225|gb|EDY88495.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 130 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + G R+ R G+ + L E LG+ + V+ +E+ + A+R+Q ++ +L Sbjct: 13 NEANATFGDRLAAARQAKGLDVDGLSEKLGVDVETVKVWERDADMPHANRIQMLAGLLNV 72 Query: 69 PISFFFDVSPTVCSDISS 86 + + S+++ Sbjct: 73 SMVWLVSGEGNGTSEVAD 90 >gi|154504728|ref|ZP_02041466.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC 29149] gi|153794902|gb|EDN77322.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC 29149] Length = 117 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 9 NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N +D +G+R++ R+ M+QE+L E + + E G + L I VLE Sbjct: 5 NELDYTKLGERLKEARIKKHMTQEELSEKIDSATSSISHLENGTHSPSLKTLIKICNVLE 64 Query: 68 SPIS 71 I Sbjct: 65 IGID 68 >gi|330719156|ref|ZP_08313756.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 251 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ +R+ L +Q ++ L +T Q + +E L +S+ L+ Sbjct: 1 MKLGQKLKQKRIQLNKTQAQMATDLHVTRQTISHWENDDTYPSLDMLVMLSDYLD----- 55 Query: 73 FFDVSPTVCSDISSEENNVMD 93 F + + + + NN++ Sbjct: 56 -FSLDSALKEEGTDMVNNIIQ 75 >gi|326388406|ref|ZP_08210002.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207138|gb|EGD57959.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 485 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI+ R LG++Q+ + E LGI+ V E+ + A L ++ + +S Sbjct: 27 LYLGPRIKRLRRELGLTQQAMAEDLGISPSYVALIERNQRPLTADLLLRLARSYKLDMS 85 >gi|309776579|ref|ZP_07671559.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915680|gb|EFP61440.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 189 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 35/65 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ N+G+ I+ +R M+ + + E ++ + + E+G+ + L+ +++ L + Sbjct: 1 MNKNIGELIKQKRTENKMTLKDISEATELSIGYLSQLERGLTSIAHDTLKKVAKALGVEM 60 Query: 71 SFFFD 75 ++F + Sbjct: 61 TYFME 65 >gi|320107125|ref|YP_004182715.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319925646|gb|ADV82721.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 112 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 24/51 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R ++Q +L E +G+ Q+++YE G ++ ++ ++ L Sbjct: 9 RLRKERSLTQPQLAEKIGLHVAQIRRYEAGTSQPTLDVIRSLAVALGVSAD 59 >gi|294013139|ref|YP_003546599.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676469|dbj|BAI97987.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 80 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R + G++QE L + + E+G + + ++ L+ + F Sbjct: 10 LGDAVRQLRKVRGLTQEDLSGLTELHRNHIGGIERGERNITIKTMLALARALDVQPAELF 69 >gi|291540119|emb|CBL13230.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 118 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 34/73 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I +GKR+R R+ + + + ++ + LG+T + +K E GV + ++ + + Sbjct: 16 NIQIGKRLREARLNMNLEKSEIADVLGVTVEHYRKLEAGVTGISVDKVLTLYHKYGIDPT 75 Query: 72 FFFDVSPTVCSDI 84 + + D Sbjct: 76 YLITGESSNIKDF 88 >gi|317131912|ref|YP_004091226.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469891|gb|ADU26495.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 73 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RIR R ++Q ++ L I YE G + L I+++ ++ + + Sbjct: 3 ERIRNMREDRDLTQTQMASYLNIHQTTYSDYEIGNLNIPIPVLMKIADLFDTSVDYL 59 >gi|317128356|ref|YP_004094638.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473304|gb|ADU29907.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 111 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+R++ R GM+ +L + G+ + E+ + L+ ++ VL I + Sbjct: 2 IGERVKRYRKEAGMTLTELADKAGVAKSYLSALERNIQTNPSIQFLEKVANVLGLSIDYL 61 >gi|283796900|ref|ZP_06346053.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075310|gb|EFE12674.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 139 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFF 73 R++ +R+ ++Q L E + +T + +Q YE G + ++ ++E L + + Sbjct: 6 RLKEKRVEANLTQAALAEKVSVTARTIQNYELGTRKPTKYDIVKKLAEALNTTPEYL 62 >gi|167767712|ref|ZP_02439765.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|240145134|ref|ZP_04743735.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|317497495|ref|ZP_07955815.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710451|gb|EDS21030.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|257202808|gb|EEV01093.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|291558919|emb|CBL37719.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] gi|316895281|gb|EFV17443.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R M+Q+ L + L ++ + V K+E+G + + L I++VL ++ Sbjct: 10 GHFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVTELLQ 69 Query: 76 VSPTVCSDISSEE 88 + + + Sbjct: 70 GEKLKENKTLNSD 82 >gi|163867793|ref|YP_001608997.1| hypothetical protein Btr_0553 [Bartonella tribocorum CIP 105476] gi|161017444|emb|CAK01002.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476] Length = 217 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PIS 71 +++ I+ R LG++Q KL E G T Q+++ EKG ++ + ++ L P + Sbjct: 1 MHI---IKKLRKDLGLTQVKLAEKAGTTQPQIKRLEKGERKLTKEWAEKLAPHLGVKPFN 57 Query: 72 FFFDVSPTV 80 F + + Sbjct: 58 LLFPENEEI 66 >gi|118587226|ref|ZP_01544654.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118432368|gb|EAV39106.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 143 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 32/53 (60%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + +G++++ +R G+SQ+++ + L +T Q V +EK + L+ +S++ Sbjct: 1 MAIGQKLQEQRQRNGLSQQQVAQKLNVTRQTVSSWEKDRTIPDPNSLKKLSKI 53 >gi|119384106|ref|YP_915162.1| hypothetical protein Pden_1365 [Paracoccus denitrificans PD1222] gi|119373873|gb|ABL69466.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 477 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+R+R+ R LG++Q ++ LG++ V E A L ++E+ + I+ Sbjct: 9 IGQRLRVLRQSLGLTQAQMAAELGVSASYVTLIESDQRPASARFLMRLAEIYDLNIA 65 >gi|330006499|ref|ZP_08305628.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|328535829|gb|EGF62263.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 165 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 18/100 (18%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ SQE+L E G++ + +Q+ E G R G L ++ V E ++ ++ Sbjct: 10 NQVKQLRLQRAWSQEQLAEMAGLSVRTIQRIENGE-RPGLETLSALAAVFEVTVA---EI 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + + +D +I++ K R Sbjct: 66 GGEARREDAPGQEASLDL--------------RIEEAKAR 91 >gi|325970790|ref|YP_004246981.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324026028|gb|ADY12787.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 91 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R+ M+QE+L E ++ Q+ E G +Q I L F Sbjct: 6 IGQAIKALRLAQNMTQEELIERADLSRSQLYYIESGKRTPRLPTMQSICSALSVSFLEF 64 >gi|323345085|ref|ZP_08085309.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323094355|gb|EFZ36932.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 85 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + K I V + G+ +R R + +SQE+L G+ + E+ V ++ Sbjct: 11 IADVKYIKQDVLVRFGQIVRRYREDMNISQEELAFRAGLHRTYIGMIERAEKNVTLCNIK 70 Query: 61 HISEVLESPISFFFD 75 I++ L I FD Sbjct: 71 KIADALGIDIKDLFD 85 >gi|307298381|ref|ZP_07578185.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916467|gb|EFN46850.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] Length = 135 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 V ++ R G+SQ++LGE LG V E+G + L IS L+ Sbjct: 34 QVASQLMSYRKERGLSQKQLGELLGFKQPYVSNIERGEENLSLETLVKISACLK 87 >gi|300919981|ref|ZP_07136440.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] gi|300412928|gb|EFJ96238.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] Length = 235 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ G+SQ +L + +GI+ +QK G G+ ++ ++ L+ + Sbjct: 6 ERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTN-GSRKMVELANALKVRPEWLSSG 64 Query: 77 SPTVCSDISSEENNVMD 93 + E +NV + Sbjct: 65 IGEMRDGAHEEPSNVRE 81 >gi|298292838|ref|YP_003694777.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929349|gb|ADH90158.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 91 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ + R ++QE+L G + Q + E+G+ L I+ L Sbjct: 5 KLVGRNLARLRQAQKLTQEELAMRSGFSQQYLSDMERGLKNPTIITLYEIALALRVS 61 >gi|294789944|ref|ZP_06755165.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] gi|294482125|gb|EFG29831.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] Length = 58 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 IN+G+ ++ R M+QE LG LG+T V EKG + I+++ Sbjct: 2 INLGEWVKEARTSAKMTQESLGFELGMTKANVSNMEKGRTNPSFEHILKIAQITN 56 >gi|256783997|ref|ZP_05522428.1| hypothetical protein SlivT_05883 [Streptomyces lividans TK24] gi|289767878|ref|ZP_06527256.1| DNA-binding protein [Streptomyces lividans TK24] gi|289698077|gb|EFD65506.1| DNA-binding protein [Streptomyces lividans TK24] Length = 272 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D VG +R R +SQ +L + + + E G +R + ++E L+ P+ Sbjct: 13 DRGVGPMLRAWRERRRVSQLELALRADSSARHISFVETGRSRPSEEMVLRLAEHLDVPV 71 >gi|229115222|ref|ZP_04244632.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228668362|gb|EEL23794.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] Length = 404 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L +T + + E G LQ+I+E L SF Sbjct: 4 LGAKIKTLRKEKKLTQTDLAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EDDDVETIEL 72 >gi|255102943|ref|ZP_05331920.1| transcriptional regulator, xre family protein [Clostridium difficile QCD-63q42] gi|255652399|ref|ZP_05399301.1| transcriptional regulator, xre family protein [Clostridium difficile QCD-37x79] Length = 117 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 19/117 (16%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R+ G+SQ + G LG+T ++ E G R+ S L+ I+ + + Sbjct: 4 RIRDLRIAEGLSQIEFGNKLGMTRHEIYNLESGRTRIKESDLKLITSTFKVNEKWL---- 59 Query: 78 PTVCSDISSEENNVMDFISTPDGL-------QLNRY---FIQIDDVKVR--QKIIEL 122 T D+ + NN + T + L +L + F +++D ++ +K++EL Sbjct: 60 KTGEGDMYTFSNN---NLITAEVLCAIDKNERLAKAMLKFSKLNDKELEAMEKLLEL 113 >gi|210617288|ref|ZP_03291514.1| hypothetical protein CLONEX_03736 [Clostridium nexile DSM 1787] gi|210149392|gb|EEA80401.1| hypothetical protein CLONEX_03736 [Clostridium nexile DSM 1787] Length = 78 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+++GK I+ R ++Q+++ L I+ K E + S L ++++ Sbjct: 7 DMDIGKNIQSLRYKNNLTQDQVIAKLNLMGIVISKSTYAKLETNRMNIKVSELVALAKIF 66 Query: 67 ESPISFFFDV 76 + I+ FFD Sbjct: 67 HTDINAFFDG 76 >gi|254462059|ref|ZP_05075475.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678648|gb|EDZ43135.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 145 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 4/86 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R+ R MSQ + LGI ++ +E+ ++ A+ L ++ VL + + Sbjct: 31 GDRLAAAREYAQMSQALMARRLGIRASTLRSWEQDLSEPRANHLSIMAGVLNVSMVWLMN 90 Query: 75 ---DVSPTVCSDISSEENNVMDFIST 97 + +D + + +V + Sbjct: 91 GEGEGLDAPNADAAETDADVATILRD 116 >gi|162453255|ref|YP_001615622.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161163837|emb|CAN95142.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 186 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 K I+ R G++Q++L + G+ E G L + L+ I Sbjct: 13 KNIKQLREARGLTQQQLAKLAGVPRATWAHLESGAANPTLGVLHRAAAALQVSI 66 >gi|163814538|ref|ZP_02205927.1| hypothetical protein COPEUT_00689 [Coprococcus eutactus ATCC 27759] gi|158450173|gb|EDP27168.1| hypothetical protein COPEUT_00689 [Coprococcus eutactus ATCC 27759] Length = 293 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 15/110 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V ++I R L MSQ +L GI+ + ++K A +L I + L+ ++ Sbjct: 7 VKVYEKIFARLDELNMSQSELSRRTGISTSTINDWKKKKINPQADKLVAICKALDMSLAD 66 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 D + + +D S+EE L + + D VR+ ++ Sbjct: 67 LLGEDGAESSGTDYSAEEKY------------LVECYRR-SDNYVRRHML 103 >gi|104303743|gb|ABF72139.1| HTH domain protein [Arcanobacterium pyogenes] Length = 49 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 +I GK+IR R LGM+QE+L L +T Q + +E+GV+ Sbjct: 7 NITTGKQIRHLRTQLGMTQEELAGELNVTRQALSNWERGVS 47 >gi|328477982|gb|EGF47897.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 70 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R ++Q+ L + L ++ Q V E G +S V PI F Sbjct: 3 NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIFID 62 Query: 77 SPTVCSDI 84 + Sbjct: 63 ENADSQSL 70 >gi|297158498|gb|ADI08210.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 159 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 36/84 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L + Sbjct: 9 LGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 68 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + E ++ P Sbjct: 69 VQAGILDERERDETETRSVILADP 92 >gi|296284711|ref|ZP_06862709.1| DNA-binding protein [Citromicrobium bathyomarinum JL354] Length = 81 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 17 KRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R MSQ LGE +G+T + E+G I+ + + F Sbjct: 9 NRVRELREEHDKMSQAALGEAVGVTRHTIIAIEQGRYSPSLETAFRIARLFGVGVEDVF 67 >gi|291530670|emb|CBK96255.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 121 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ MSQ +L E I+ + + E G ++ S +I+E L+ Sbjct: 12 IGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSADVLL 71 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + + I E N D ++ Sbjct: 72 RTNTPEVNGIYQGEFN--DLLAD 92 >gi|255034983|ref|YP_003085604.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254947739|gb|ACT92439.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 126 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 10/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+RI+ R + G +Q KL + L + + +E G N + L+ ++E+ + ++ Sbjct: 4 VGERIKKYRELAGWNQHKLAKALKKSGKAVISNWETGRNDPSLAELRLMAELFGTTVAQL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 P E I D + L R + ++ +I L + ++K Sbjct: 64 VGEVPMF-----EEPREHYIMIKKDDLIDLQRKALALEAD----RINALKEQLEQAQKAD 114 Query: 134 RTIEE 138 + EE Sbjct: 115 ESSEE 119 >gi|218896717|ref|YP_002445128.1| DNA-binding protein [Bacillus cereus G9842] gi|218542568|gb|ACK94962.1| DNA-binding protein [Bacillus cereus G9842] Length = 404 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L +T + + E G LQ+I+E L SF Sbjct: 4 LGAKIKTLRKEKKLTQTDLAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EDDDVEKIEL 72 >gi|91789185|ref|YP_550137.1| transcriptional regulator [Polaromonas sp. JS666] gi|91698410|gb|ABE45239.1| transcriptional regulator, XRE family with cupin sensor domain [Polaromonas sp. JS666] Length = 201 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 7 IPNPVDINV------GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 P P D V G R+R R++ G++ ++ + + + K E G + L Sbjct: 12 APTPEDAAVKPPSMLGVRLRHARLVAGLTMTQVAQKSQCSESLISKIESGQASPSLAMLH 71 Query: 61 HISEVLESPISFF-FDVSPTVCSDISSEENNVM 92 I+ L++ I+ + +P S E V+ Sbjct: 72 RIAVTLDTNIAALTTEEAPREGPIRLSGERPVI 104 >gi|38703909|ref|NP_309096.2| regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|195935171|ref|ZP_03080553.1| putative regulatory protein [Escherichia coli O157:H7 str. EC4024] gi|260854273|ref|YP_003228164.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|261225700|ref|ZP_05939981.1| putative regulatory protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254659|ref|ZP_05947192.1| putative phage repressor protein [Escherichia coli O157:H7 str. FRIK966] gi|257752922|dbj|BAI24424.1| predicted phage repressor protein [Escherichia coli O26:H11 str. 11368] Length = 133 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F + Sbjct: 11 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVSGHPLHWFL-LP 69 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P C I + + + P +L + F + + + E+ Sbjct: 70 PEECEQIFTPDTMKIG----PRQRELLQAFSAFPEEDQEKMLQEI 110 >gi|73490241|dbj|BAE19798.1| hypothetical protein [Pseudomonas fluorescens] Length = 198 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 9/111 (8%) Query: 1 MVGNKKIPNPVD---INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M ++ +P + ++VG+R++ R + G+SQ +L + G+T + EK S Sbjct: 2 MAASRPESDPQEAPALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSIS 61 Query: 58 RLQHISEVLESPISF--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 L+ + P+S FF ++ + I + N ++D ++L Sbjct: 62 SLRKVLS--GIPMSMVEFFSEEILQENPTQIVYKANELIDISDGAVTMKLV 110 >gi|307710856|ref|ZP_07647283.1| hypothetical protein SMSK321_1212 [Streptococcus mitis SK321] gi|307617301|gb|EFN96474.1| hypothetical protein SMSK321_1212 [Streptococcus mitis SK321] Length = 303 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVP 58 >gi|299782826|gb|ADJ40824.1| Hypothetical phage protein [Lactobacillus fermentum CECT 5716] Length = 357 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+++ RI R G+S KL + L ++ + KYE+GV + ++E Sbjct: 14 DLDMKNRITELREEKGLSMRKLSKSLKEKGLSLSTDSLSKYERGVRNPKIENWEKLAEFF 73 Query: 67 ESPISFF 73 + P+ + Sbjct: 74 KVPVDYL 80 >gi|288803985|ref|ZP_06409407.1| DNA-binding protein [Prevotella melaninogenica D18] gi|288333555|gb|EFC72008.1| DNA-binding protein [Prevotella melaninogenica D18] Length = 184 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R L +S E++ E G+T ++ K E G + + SRL +S+ + Sbjct: 6 KLIGERLKGLRESLDISVEEMAETCGVTDEKYLKMEAGESDLSVSRLYKLSQKYGIALDA 65 Query: 73 F-FDVSPTVCS 82 F P +CS Sbjct: 66 LMFGEEPHMCS 76 >gi|284162519|ref|YP_003401142.1| XRE family transcriptional regulator [Archaeoglobus profundus DSM 5631] gi|284012516|gb|ADB58469.1| transcriptional regulator, XRE family [Archaeoglobus profundus DSM 5631] Length = 309 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+++R R LG+S +L LG++ + V+KYE+ V+ + EVL I Sbjct: 128 GEKLREMRERLGLSIGELANILGVSRRTVKKYEEDVD-ASIETALKLEEVLGVEI 181 >gi|253578952|ref|ZP_04856223.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849895|gb|EES77854.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 170 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R+ +Q +L +G+T + + YEKG + + ++ + + Sbjct: 5 SRIKDLRIENNYTQRELAAKIGLTPKMISFYEKGERVPPLDIIVKLVQIFNVSSDYLLGL 64 Query: 77 SPTVCSD 83 S D Sbjct: 65 SDKRYPD 71 >gi|284036657|ref|YP_003386587.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283815950|gb|ADB37788.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 402 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V IR R + G++QE+ + I + YE+G +Q I++ + + Sbjct: 4 VSDNIRYLRKLNGLTQEQFSRKINIKRSLLGAYEEGRANPNGQNIQAIAKAFNTTV 59 >gi|300767755|ref|ZP_07077665.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494740|gb|EFK29898.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 250 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI------SF 72 ++ RR G++Q +L L +T Q V K+E+G L +S++ + S Sbjct: 7 LKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDELVRGSA 66 Query: 73 FF 74 FF Sbjct: 67 FF 68 >gi|225574885|ref|ZP_03783495.1| hypothetical protein RUMHYD_02963 [Blautia hydrogenotrophica DSM 10507] gi|225037908|gb|EEG48154.1| hypothetical protein RUMHYD_02963 [Blautia hydrogenotrophica DSM 10507] Length = 98 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI+ R ++Q++L E L I+ + YE G + L ++ + I + Sbjct: 28 QRIQNLREDADLTQKELSEYLHISPRTYSHYENGTRNIPVEMLIRLANYYNTSIDYL 84 >gi|219670446|ref|YP_002460881.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540706|gb|ACL22445.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 77 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R R+ GM+ ++L G+ ++ + + EKG+ + + IS+ L+ P FF Sbjct: 5 NNLREWRLANGMTLKELARRTGLDYRYLSQLEKGLRKGTPNTWIKISKELQVPAKTFFPD 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|242279628|ref|YP_002991757.1| XRE family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122522|gb|ACS80218.1| transcriptional regulator, XRE family [Desulfovibrio salexigens DSM 2638] Length = 294 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R+ S E++ +GI+ + +YEKG + L+ I+++L ++ Sbjct: 7 KEIGQRLKAFRLGSKYSTEEIAAKIGISRAALYRYEKG-DPPKLETLESIADLLGVSLTS 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 V S S + + + L Sbjct: 66 LMGVGVEYISSAISFFERMRQNEAESEQLA 95 >gi|193066155|ref|ZP_03047209.1| transcriptional regulator, XRE family [Escherichia coli E22] gi|192926167|gb|EDV80807.1| transcriptional regulator, XRE family [Escherichia coli E22] Length = 112 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 11/110 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R L ++Q+ L + +G+ + +EK A +L +SE+ I + Sbjct: 2 IGLRIKEERERLSLTQQGLADAIGVAKRTFIDWEKDRTSPTAVQLSALSEI-GVDILYVV 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 V+ + + +L F ++ + R+ I+E+ + Sbjct: 61 ---------TGVRSQPVVAPYVSQEKKELMDAFDEM-SPEQRRAILEVGK 100 >gi|187934570|ref|YP_001886346.1| hypothetical protein CLL_A2157 [Clostridium botulinum B str. Eklund 17B] gi|188589133|ref|YP_001921361.1| hypothetical protein CLH_1980 [Clostridium botulinum E3 str. Alaska E43] gi|251778914|ref|ZP_04821834.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187722723|gb|ACD23944.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] gi|188499414|gb|ACD52550.1| conserved domain protein [Clostridium botulinum E3 str. Alaska E43] gi|243083229|gb|EES49119.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 69 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I++ R L M+Q++L E +GI+ Q + E+G + I + L + F Sbjct: 7 IKVARAQLDMTQKQLAEKVGISRQTMNAIEQGDYNPTIKLCRAICKALGKGLDDLF 62 >gi|56963509|ref|YP_175240.1| transcriptional repressor of PBSX genes [Bacillus clausii KSM-K16] gi|56909752|dbj|BAD64279.1| transcriptional repressor of PBSX genes [Bacillus clausii KSM-K16] Length = 101 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 3/84 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ ++ ++LG+ L + + YE G + L +++ + Sbjct: 4 SRLKECRIKKQLTMKELGQALNMAQSTISGYENGTRKPDLDNLARLADYFNVSTDYLVGR 63 Query: 77 SPTVCSDISSEENNVMD---FIST 97 + S I + D F++ Sbjct: 64 LDSNDSFILHSDQLTSDEKLFLAD 87 >gi|28377772|ref|NP_784664.1| hypothetical protein lp_0949 [Lactobacillus plantarum WCFS1] gi|254555954|ref|YP_003062371.1| hypothetical protein JDM1_0787 [Lactobacillus plantarum JDM1] gi|308179946|ref|YP_003924074.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270605|emb|CAD63511.1| unknown [Lactobacillus plantarum WCFS1] gi|254044881|gb|ACT61674.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|308045437|gb|ADN97980.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 250 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI------SF 72 ++ RR G++Q +L L +T Q V K+E+G L +S++ + S Sbjct: 7 LKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDELVRGSA 66 Query: 73 FF 74 FF Sbjct: 67 FF 68 >gi|116672405|ref|YP_833338.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Arthrobacter sp. FB24] gi|116612514|gb|ABK05238.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Arthrobacter sp. FB24] Length = 507 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +VG +R R G +Q +L LG + + + E+G + +Q + ++ I Sbjct: 8 HVGLLLRDARGEKGWTQGQLAAELGTSQSAIARMEQGKQNLSLKMIQRLEAIVGRSI 64 >gi|312866087|ref|ZP_07726308.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] gi|311098491|gb|EFQ56714.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] Length = 162 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + R + G SQEK+ E + I+ Q K+E G + ++EV I Sbjct: 25 MLRKLKGFSQEKIAEKIAISRQAYGKWESGETIPNIEKCALLAEVYGVTID 75 >gi|239942360|ref|ZP_04694297.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239988825|ref|ZP_04709489.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 167 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L Sbjct: 8 NLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67 Query: 74 F 74 + Sbjct: 68 Y 68 >gi|227551898|ref|ZP_03981947.1| DNA-binding protein [Enterococcus faecium TX1330] gi|257895511|ref|ZP_05675164.1| transcriptional regulator [Enterococcus faecium Com12] gi|227178970|gb|EEI59942.1| DNA-binding protein [Enterococcus faecium TX1330] gi|257832076|gb|EEV58497.1| transcriptional regulator [Enterococcus faecium Com12] Length = 370 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 6 LSKNVANLRKKKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELL 65 Query: 75 DVSPTVCSD 83 P + + Sbjct: 66 GYHPQLTKE 74 >gi|220929560|ref|YP_002506469.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999888|gb|ACL76489.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 206 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ R I +SQE LG+ LG+ + +E ++ ++E+ + Sbjct: 133 GIRLKRLRRIHNISQEDLGKVLGVGRTAIANWETNQTEPTGENIKKLAELFRVTTDYL 190 >gi|28628140|gb|AAO34623.1| unknown [Erwinia chrysanthemi] Length = 119 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 R+ R ++Q+ L + I Q+++YE G + L +++VL + FD Sbjct: 15 ARLIQLRKAADLTQQALADRASIHVNQIRRYEAGSAQPTLDALIRLAKVLRVSLDGLVFD 74 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 SD + + + + + Sbjct: 75 DHERGPSDDLALQFEAVSGMPEEE 98 >gi|15800839|ref|NP_286855.1| DicA, regulator of DicB; encoded within cryptic prophage CP-933M [Escherichia coli O157:H7 EDL933] gi|254792181|ref|YP_003077018.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. TW14359] gi|12514168|gb|AAG55466.1|AE005287_13 similar to DicA, regulator of DicB; encoded within cryptic prophage CP-933M [Escherichia coli O157:H7 str. EDL933] gi|254591581|gb|ACT70942.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. TW14359] Length = 132 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F + Sbjct: 10 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVSGHPLHWFL-LP 68 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P C I + + + P +L + F + + + E+ Sbjct: 69 PEECEQIFTPDTMKIG----PRQRELLQAFSAFPEEDQEKMLQEI 109 >gi|301170246|emb|CBW29850.1| hypothetical protein HIB_16640 [Haemophilus influenzae 10810] Length = 127 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +IR+ R + +SQE + E + ++ K E+G R+ +L I+++ +S D Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNMNLSDLVD 63 >gi|261406993|ref|YP_003243234.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283456|gb|ACX65427.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 186 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++ R MS + L E G++ + E+G + + IS+ + P+ Sbjct: 12 LQMGGALKKYRKEKNMSLDDLAEITGVSKLTLGNIERGETNPTLAIIWKISKGISLPLFA 71 Query: 73 FFDVS-PTVCSDISS-------EENNVMDFISTPDGLQLNRYFIQ 109 F P E+N +++ + + +++ R ++Q Sbjct: 72 LFKSENPVSLYRAGEGLRFSNDEKNWIIEPVFKSNDMEMCRAYLQ 116 >gi|229589661|ref|YP_002871780.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229361527|emb|CAY48403.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 185 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R ++ +L + + + + + E+G++R + L IS L+ P ++F+ Sbjct: 14 IHDLRKHKKLTLAQLAQKIERSVGFLSQVERGLSRPTVADLTAISHALDVPTTYFYSQPK 73 Query: 79 TVCSDISSEENN 90 D + N Sbjct: 74 PKAVDWITRPNE 85 >gi|196230222|ref|ZP_03129085.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196225819|gb|EDY20326.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 207 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + R+R R G+S + L G++ + E+G + A L+ ++ L + + Sbjct: 16 LNQRIAGRVRELRAAQGLSLDTLANRSGVSRSMISLIERGESSPTAVVLEKLASGLGATL 75 Query: 71 SFFFDVSPTVCSDISSE 87 FD S +S Sbjct: 76 PSLFDGLSAKASGPTSP 92 >gi|187919965|ref|YP_001888996.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718403|gb|ACD19626.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 190 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D + +R+R R S ++L + G++ + + E A+ L + Sbjct: 9 NAIDRRIAQRLRALRAERNWSLDELAKLSGVSRATLSRLENAAVSPTANVLGKLCVAYGL 68 Query: 69 PIS 71 P+S Sbjct: 69 PMS 71 >gi|21224841|ref|NP_630620.1| hypothetical protein SCO6539 [Streptomyces coelicolor A3(2)] gi|3560014|emb|CAA20636.1| conserved hypothetical protein SC5C7.24c [Streptomyces coelicolor A3(2)] Length = 272 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D VG +R R +SQ +L + + + E G +R + ++E L+ P+ Sbjct: 13 DRGVGPMLRAWRERRRVSQLELALRADSSARHISFVETGRSRPSEEMVLRLAEHLDVPV 71 >gi|322411714|gb|EFY02622.1| phage repressor-like protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ ++QE+LG+ L + + +EKG N + + + +F Sbjct: 4 GDQLKTARLAKQLNQEELGQLLNVNKMTISNWEKGKNIPNQKHFEQLLSLFGLTADYF 61 >gi|312976864|ref|ZP_07788613.1| putative transcriptional repressor [Lactobacillus crispatus CTV-05] gi|310896192|gb|EFQ45257.1| putative transcriptional repressor [Lactobacillus crispatus CTV-05] Length = 63 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R+ ++QE L + + ++ Q + EKG + I + L+ + F Sbjct: 1 MKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLF 56 >gi|295108110|emb|CBL22063.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 118 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKKKDLTQQELADLNHVSVKQIASIEKGQINPSYLILKALAKVL 60 >gi|295105402|emb|CBL02946.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 66 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G +Q +L +G+T + V +E L +++ + + Sbjct: 4 ISERLQHLRLTHGYTQTELARTMGVTRRAVYAWEHDKC-PEIPHLIQLAQFYQVSTDYL 61 >gi|269956896|ref|YP_003326685.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305577|gb|ACZ31127.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 252 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +RI R G+S +L + + V + E G Q I VL PI F Sbjct: 1 MDLAERISTLRRANGLSARQLAALVDVAPTTVTRIEAGSVSPSFDLAQEIMRVLGEPIGF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 P + + + +T +G++ Sbjct: 61 TGGADPDAIAAGRLSLDPTLQLEAT-EGVR 89 >gi|226314526|ref|YP_002774422.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226097476|dbj|BAH45918.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 189 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 32/69 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R+ + +++ E ++ + + E+G + + L+ ISE L +FF Sbjct: 5 IGVLIKSLRVGKKKTLKQIAEKTQLSISFLSQVERGKSSITLESLKKISEALGVSPGYFF 64 Query: 75 DVSPTVCSD 83 + ++ Sbjct: 65 SGESSGGNE 73 >gi|199597846|ref|ZP_03211272.1| transcriptional regulator, PbsX family protein [Lactobacillus rhamnosus HN001] gi|258509577|ref|YP_003172328.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|199591282|gb|EDY99362.1| transcriptional regulator, PbsX family protein [Lactobacillus rhamnosus HN001] gi|257149504|emb|CAR88477.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259650844|dbj|BAI43006.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 70 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R ++Q+ L + L ++ Q V E G +S V PI F Sbjct: 3 NRIEALRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIFID 62 Query: 77 SPTVC 81 Sbjct: 63 ESADS 67 >gi|307154678|ref|YP_003890062.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984906|gb|ADN16787.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 83 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +GK IR R+ LGM+QE+ LG+ + V ++E G + L+ I ++L Sbjct: 14 IGKLIRSIRLELGMTQEQFAAYLGVVYPTVNRWENGHTQPSLMALRLIEKLL 65 >gi|154483750|ref|ZP_02026198.1| hypothetical protein EUBVEN_01454 [Eubacterium ventriosum ATCC 27560] gi|149735241|gb|EDM51127.1| hypothetical protein EUBVEN_01454 [Eubacterium ventriosum ATCC 27560] Length = 187 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI+ R +GM+Q++LGE LG + ++ +YE ++ +S++ + Sbjct: 14 MAIGQRIKYFRNRIGMTQKQLGEQLGFKGKTSDVRMAQYESEARVPKIDLVKQMSQIFDI 73 >gi|10956712|ref|NP_061657.1| transcriptional regulator [Xylella fastidiosa 9a5c] gi|9112239|gb|AAF85570.1|AE003851_1 transcriptional regulator [Xylella fastidiosa 9a5c] Length = 86 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ R R + +SQ ++ E G+T + E G + + + +++ + P+ Sbjct: 24 GRNFRNARNMAKLSQREIAEKTGLTQNWISMVENGRSTISIDNMAKLAKCVNVPL 78 >gi|238786954|ref|ZP_04630754.1| Transcriptional regulator, XRE family [Yersinia frederiksenii ATCC 33641] gi|238724742|gb|EEQ16382.1| Transcriptional regulator, XRE family [Yersinia frederiksenii ATCC 33641] Length = 122 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 12/98 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G SQE + G++ + KYE+G A+ L ++ + + Sbjct: 12 IGARLREEREKTGESQEAMATNFGVSTRTWGKYERGETVPDAATLALLNAQYGLDVMYIL 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 T IS+EE L+L + +DD Sbjct: 72 TGKRTPPDTISTEE------------LKLVENYRAMDD 97 >gi|114564176|ref|YP_751690.1| XRE family transcriptional regulator [Shewanella frigidimarina NCIMB 400] gi|114335469|gb|ABI72851.1| transcriptional regulator, XRE family with cupin sensor [Shewanella frigidimarina NCIMB 400] Length = 182 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 +++G ++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDIGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLK---KVLAGIPMS 57 Query: 72 --FFFDVSPTVCSD 83 FF + D Sbjct: 58 LVDFFSIDDGSIGD 71 >gi|332523455|ref|ZP_08399707.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332314719|gb|EGJ27704.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 359 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 14/119 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I L R LGM+QEKL + L +T + K+E + L ++++ + + Sbjct: 2 IGDTIFLERTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILLAKLFDMTLDDLV 61 Query: 75 DVSPTVCSDISSE----------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 T+ +E + ++F + +L++++ I+D K +++LV Sbjct: 62 GFQKTLTDFERTELFNQLKEKINQTEELEFFQEIE--ELSKHY--INDFKTLLMLVQLV 116 >gi|330717978|ref|ZP_08312578.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 86 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + I+ R+ LG + + E L I+ + KYE G + +SEVL + ++ Sbjct: 25 IANNIKQIRLKLGYKRVDVAEQLNISVSTIAKYETGSRIPDIDTIIQLSEVLHTNVN 81 >gi|319654646|ref|ZP_08008727.1| hypothetical protein HMPREF1013_05349 [Bacillus sp. 2_A_57_CT2] gi|317393712|gb|EFV74469.1| hypothetical protein HMPREF1013_05349 [Bacillus sp. 2_A_57_CT2] Length = 113 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 4/84 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +QE + L ++ YE + L+ +SE+ + I + Sbjct: 2 LGDRLKKLRNDHNWTQEDVARKLELSRGTYAHYEINKRQPDYDTLKKLSEIFDVSIDYLI 61 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + SSE+ +F+ Sbjct: 62 TGNKYS----SSEDEMWKEFLDPK 81 >gi|313205676|ref|YP_004044853.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312444992|gb|ADQ81347.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] Length = 104 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 28/69 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ G++ ++L + +G++ + G N L I+ L I F+ + Sbjct: 8 KLKEVLKDKGVTGKELADGIGVSVTTISNIIVGRNFPKPQTLLDIATFLNVDIKDLFNST 67 Query: 78 PTVCSDISS 86 ++ + Sbjct: 68 KDTNNNETP 76 >gi|312794245|ref|YP_004027168.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181385|gb|ADQ41555.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 129 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R++ R + G+S KL + + + E G L+ I L ++ FF Sbjct: 19 VGRRVKELRELRGLSMTKLSKIARVGQSTLSYIESGRQSPTVDVLERICSALGITLAEFF 78 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 SP + D+ ++ ++ Sbjct: 79 --SPVIKDDLRDPLIQQLEVYASK 100 >gi|295101707|emb|CBK99252.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 280 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESP 69 V + +G+R++ R ++ E+L +GI+ + KYE + + + +++ Sbjct: 3 VKLTIGERLKDLRTAQKLTLEQLAAEVGISKSALGKYESDNGKDISPYSILVLADYYGVS 62 Query: 70 ISFFF 74 + Sbjct: 63 CDYLM 67 >gi|293399898|ref|ZP_06644044.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306298|gb|EFE47541.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 135 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 32/79 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R+ G++QE + E + +T Q + +E + + +S + + Sbjct: 1 MKIGVKLKEARLQAGLTQENVAEEIQVTRQTISNWETEKSFPDIVSVIKLSTLYNISLDK 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + N V Sbjct: 61 LLKGDEEMIEHLEKSTNIV 79 >gi|317050695|ref|YP_004111811.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945779|gb|ADU65255.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 224 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +LG++Q + +G + V + E+G G L+ I E L + I++ Sbjct: 4 QRLRELRKMLGLTQGEFAFHVGTSPGYVSEAEQGKKVPGGEILRRICEKLNANINWLLTG 63 Query: 77 S 77 S Sbjct: 64 S 64 >gi|257486736|ref|ZP_05640777.1| Fis family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010206|gb|EGH90262.1| Fis family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 156 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 19 IRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDV 76 ++L R+ G+SQE LG+ G ++ V K E G + V ++ L+ PI+ Sbjct: 11 LQLLRIRKGLSQENLGDIEGSVSQPYVSKLELGKSAVSLDTSYQLAAALKVEPITLL--A 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 D + ++ + D L+L Sbjct: 69 LAVASYDQKTPREMLLAALEELDALELADA 98 >gi|256377557|ref|YP_003101217.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921860|gb|ACU37371.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 737 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLE 67 +G +R R G++QE+L GI+ + + + E G + V L+ +++ L Sbjct: 5 LGPSLRRARRSAGLTQEQLSAASGISVRTISRLENGADENVRLDTLRLLADALG 58 >gi|302345905|ref|YP_003814258.1| cupin domain protein [Prevotella melaninogenica ATCC 25845] gi|302149627|gb|ADK95889.1| cupin domain protein [Prevotella melaninogenica ATCC 25845] Length = 184 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R L +S E++ E G+T ++ K E G + + SRL +S+ + Sbjct: 6 KLIGERLKGLRESLDISVEEMAETCGVTDEKYLKMEAGESDLSVSRLYKLSQKYGIALDA 65 Query: 73 F-FDVSPTVCS 82 F P +CS Sbjct: 66 LMFGEEPHMCS 76 >gi|258650681|ref|YP_003199837.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553906|gb|ACV76848.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 197 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 22/65 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R++ R ++ L GI+ + + E G + L ++ P+ Sbjct: 14 QVGPRLKRLRTQRQVTLTALAAATGISKSTLSRLETGQRKASLELLLPLAMAYNVPLDDL 73 Query: 74 FDVSP 78 Sbjct: 74 VGGPD 78 >gi|227507976|ref|ZP_03938025.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192550|gb|EEI72617.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 196 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 22/55 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + ++ R ++Q +L L ++ + +E G L I+ + P+ Sbjct: 7 ENLKFFRKQNHLNQNQLAIKLNVSRPTISSWETGRTTPDIDTLVRIASFYQVPVD 61 >gi|322383862|ref|ZP_08057608.1| phage element-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151636|gb|EFX44710.1| phage element-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 112 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +GK I+ R+ +SQE+L E L I + K+E + ++H+S + + Sbjct: 5 IGKTIKELRIKHKLSQEELAEKLNKNFGTSINKGMISKWENDLGDPRLETVRHLSMLFDV 64 Query: 69 PISFFFDVSPTVCSDISSEEN 89 + F + I++ + Sbjct: 65 SLDFLLGLEKKEPETIAAHHD 85 >gi|312865715|ref|ZP_07725939.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098836|gb|EFQ57056.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 116 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R+ G++Q+++ L +T Q + E G + + L +E + + Sbjct: 4 ERLKSLRLEAGLTQKEIATKLNMTQPQYARTENGGRKPSSETLNKFAEFFDVSTDYL 60 >gi|303241959|ref|ZP_07328452.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590514|gb|EFL60269.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 63 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R ++QE++ L IT Q QK EKG + ++ + F++ Sbjct: 3 IKEYRNRSNLTQEEVARALDITLSQYQKIEKGKSITNIITGLKMARLYNVDPYILFEIDK 62 Query: 79 T 79 Sbjct: 63 D 63 >gi|297620902|ref|YP_003709039.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] gi|297376203|gb|ADI38033.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] Length = 76 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK +P+ ++ ++R R + ++QE+L E G + E+ + L +S+ Sbjct: 4 KKKKDPILVDFAAKVRNMRHSIPLTQEQLAERAGFHVNYIGGIERAERNPSLTSLCSLSK 63 Query: 65 VLESPI 70 L P+ Sbjct: 64 ALGCPL 69 >gi|297190852|ref|ZP_06908250.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150643|gb|EFH30705.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 275 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R +SQ +L G + + + E G +R + ++E L+ P+ Sbjct: 10 VGPLLRGWRERRRLSQLELALRAGSSARHISFVETGRSRPSEDMVLRLAEHLDVPV 65 >gi|296104296|ref|YP_003614442.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058755|gb|ADF63493.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 190 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 29/81 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G ++ R+ +S +L + G++ + E G + L I+ L + Sbjct: 16 NIGNNVKKLRIARNLSLNELAKLSGVSKATLSTLESGGSNPRVDTLDSIASALRLTLGDL 75 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + I + D+ Sbjct: 76 LGNNNERYPYIEKNSDYKGDY 96 >gi|240948027|ref|ZP_04752444.1| helix-turn-helix domain-containing protein [Actinobacillus minor NM305] gi|240297643|gb|EER48120.1| helix-turn-helix domain-containing protein [Actinobacillus minor NM305] Length = 148 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +N+ ++IR R SQE++ E L ++ K E+G ++ +L+ I+++L+ + Sbjct: 1 MNINEKIRRIRESKEWSQEQMAEKLNMSLNGYAKIERGETKLYLDKLEQIAQILDIDV 58 >gi|229096267|ref|ZP_04227240.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] gi|228687227|gb|EEL41132.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] Length = 405 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L +T + + E G LQ+I+E L SF Sbjct: 5 LGAKIKTLRKEKKLTQTDLAGS-ELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 75 DVSP 78 + Sbjct: 64 EDDD 67 >gi|220927948|ref|YP_002504857.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998276|gb|ACL74877.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 184 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + RI+ R I +S E L L IT + + YE G + S L I+ +S Sbjct: 6 KLIASRIKELREISEISVEALAAELKITEESYRSYESGETDIPVSFLYQIANKFNVELS 64 >gi|95930530|ref|ZP_01313265.1| protein of unknown function DUF955 [Desulfuromonas acetoxidans DSM 684] gi|95133365|gb|EAT15029.1| protein of unknown function DUF955 [Desulfuromonas acetoxidans DSM 684] Length = 367 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK+ NP R++ R G + KL +CL +T + + YE G + I+ Sbjct: 2 NKKVFNP------ARLKFAREKRGFTIRKLCDCLKLTTKSLSDYENGRRDPNDKTISEIA 55 Query: 64 EVLESPISFFF 74 ++L FFF Sbjct: 56 KILNFQTGFFF 66 >gi|65321317|ref|ZP_00394276.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] Length = 106 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 6/100 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+ ++ R ++Q + G+ + ++ Q+ E N L I+ + Sbjct: 5 GENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVDTLMG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFI--STPDGLQLNRYFIQ 109 F S D+ E V + S + N F + Sbjct: 65 RKFTTSEKHLEDVLDEIQTVFAGLDESQREQFCKNSSFTR 104 >gi|307705640|ref|ZP_07642491.1| hypothetical protein SMSK597_1597 [Streptococcus mitis SK597] gi|307620816|gb|EFN99901.1| hypothetical protein SMSK597_1597 [Streptococcus mitis SK597] Length = 303 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVP 58 >gi|293384665|ref|ZP_06630522.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|293389067|ref|ZP_06633541.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|312908458|ref|ZP_07767414.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312979359|ref|ZP_07791054.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|291078027|gb|EFE15391.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|291081593|gb|EFE18556.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|310625570|gb|EFQ08853.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311287864|gb|EFQ66420.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 204 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFFVTID 59 >gi|229823422|ref|ZP_04449491.1| hypothetical protein GCWU000282_00720 [Catonella morbi ATCC 51271] gi|229787197|gb|EEP23311.1| hypothetical protein GCWU000282_00720 [Catonella morbi ATCC 51271] Length = 71 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ L + +G+ Q + E ++ LE+ ++ F Sbjct: 2 NRVRELRQSRKLSQLALAKEVGVARQTINLIENDKYNPSLDLCLKLAYALETDLNTLF 59 >gi|295840749|ref|ZP_06827681.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197696319|gb|EDY43252.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 75 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 8 PNPVD---INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+ +D + RIR R+ +SQE++ E G++ VQ+ E G S L ++ Sbjct: 5 PDALDAFRRQLADRIRDHRLWRNLSQEQVAERTGLSAHTVQRIESGTRETKVSYLFRLTH 64 Query: 65 VLESPI 70 L+ + Sbjct: 65 ALDCEV 70 >gi|182418926|ref|ZP_02950183.1| HTH-type transcriptional regulator SinR [Clostridium butyricum 5521] gi|237667415|ref|ZP_04527399.1| HTH-type transcriptional regulator SinR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377209|gb|EDT74777.1| HTH-type transcriptional regulator SinR [Clostridium butyricum 5521] gi|237655763|gb|EEP53319.1| HTH-type transcriptional regulator SinR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 108 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI R + G+ L E I+ + E + L+ I+ VL+ +S F Sbjct: 2 IGTRIAELRKLKGIKLCDLAEQAEISKSYLSNLENNRKENPSPAVLEKIASVLKVNVSDF 61 Query: 74 FDVSP 78 F+ +P Sbjct: 62 FNETP 66 >gi|160942838|ref|ZP_02090078.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium prausnitzii M21/2] gi|158445890|gb|EDP22893.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium prausnitzii M21/2] Length = 110 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+RIR +R G + E+ E + ++ V E+GV I EVL+ Sbjct: 1 MNTLLGQRIREQRKEKGWTIEQFAERVDLSANYVGDLERGVKIPKLETFIRIVEVLDVSA 60 Query: 71 SFFFDVSPTVCSDISSEE 88 S S ++ +E Sbjct: 61 DVLIRDSVPSASHVADDE 78 >gi|83720248|ref|YP_441361.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83654073|gb|ABC38136.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 224 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 43 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 102 >gi|150019804|ref|YP_001312058.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906269|gb|ABR37102.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 247 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G I+ R+ G++Q++ + LGI + YE L I++ L PI Sbjct: 1 MSFGNNIKKCRLDKGINQKEFAKILGIPVSTLANYENNHREPKTEILIKIADALLIPIDE 60 Query: 73 FFDVSPTVCS 82 D T S Sbjct: 61 LLDSETTSFS 70 >gi|158313368|ref|YP_001505876.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158108773|gb|ABW10970.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 403 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +G R+ R+ M+Q +L E ++ V K E+G + + + L ++ LE P + Sbjct: 5 RALGDRVAQVRVRRSMTQAELAERADVSVDLVTKLEQGQRDGIRITTLHSLARALEVPTA 64 Query: 72 FFFDVSPTVCSDISSE 87 FF V S Sbjct: 65 TFFKVEVETAMSDSEA 80 >gi|326385587|ref|ZP_08207221.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209921|gb|EGD60704.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 227 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + +P G +R R LG++ +G GI + K E + ++ IS Sbjct: 8 RREDPETARFGHILRDLRTRLGLTLNDVGLKTGIPRSTLSKIENDKMSLSYDKIVKISSA 67 Query: 66 LESPISFFFDV 76 L IS F Sbjct: 68 LNVDISELFGG 78 >gi|307608954|emb|CBW98364.1| hypothetical protein LPW_02171 [Legionella pneumophila 130b] Length = 375 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 33/59 (55%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G++++ L E + +T +++ +E+ N+ ++ Q I+++ P +FF +P + Sbjct: 16 RERAGLTEDLLAERMHVTVEKIISWEEEKNKPTFTQAQKIAQITHIPFGYFFLENPPIE 74 >gi|273809767|ref|YP_003344887.1| DNA binding protein [Streptococcus phage ALQ13.2] gi|224812519|gb|ACN64912.1| DNA binding protein [Streptococcus phage ALQ13.2] Length = 161 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 25/53 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R +++ +L E +G+T + +E G + + S + ++E + + Sbjct: 1 MLRESRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSVPYL 53 >gi|168186643|ref|ZP_02621278.1| conserved domain protein [Clostridium botulinum C str. Eklund] gi|169295388|gb|EDS77521.1| conserved domain protein [Clostridium botulinum C str. Eklund] Length = 62 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 +++LRR+ LG+ Q++L + LGI + K EKG + V ++I++VL+ + F Sbjct: 2 KVKLRRIELGIQQQELAKKLGIGRGTLLKIEKGNYDNVKIGLAKNIAKVLDMSVEELF 59 >gi|167744435|ref|ZP_02417209.1| Helix-turn-helix domain protein, putative [Burkholderia pseudomallei 14] Length = 121 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG+ I +R G++QE + + + ++ + +YE+G RL ++ + + I Sbjct: 7 LNKIVGRCIAKKREQAGLTQETVADLIHMSTEGYARYERGETPASLMRLSRLATIFKCGI 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIS---TPDGLQLNRYFIQIDDVKVRQ 117 + T + + N++D +S + L++ + K ++ Sbjct: 67 DELVVETSTGLTAQAQHIANLLDGVSCSDRDEILKIVESICALSHKKHKK 116 >gi|190410266|ref|YP_001965767.1| hipB [Klebsiella pneumoniae] gi|146151059|gb|ABQ02825.1| hipB [Klebsiella pneumoniae] Length = 97 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R G++Q+ L E LG+T Q + E RL + +L ISF Sbjct: 21 RKANGLTQKDLSERLGVTQQTYSRLEANPASASIERLFKVFSILGVKISF 70 >gi|114771744|ref|ZP_01449148.1| hypothetical protein OM2255_13689 [alpha proteobacterium HTCC2255] gi|114547816|gb|EAU50706.1| hypothetical protein OM2255_13689 [alpha proteobacterium HTCC2255] Length = 281 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R +SQ ++ E L ++ + +E G ++ +L+ ++ + ++ ++ Sbjct: 2 RIKEYRKSKRLSQAEVAEILKVSQSTIYLWESGKGKINEEQLRSLALLFGCTVNDLNGIN 61 Query: 78 P 78 P Sbjct: 62 P 62 >gi|23464934|ref|NP_695537.1| hypothetical protein BL0333 [Bifidobacterium longum NCC2705] gi|239622527|ref|ZP_04665558.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23325529|gb|AAN24173.1| hypothetical protein with helix turn helix motif [Bifidobacterium longum NCC2705] gi|239514524|gb|EEQ54391.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 298 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R M QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNMPQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|325299767|ref|YP_004259684.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324319320|gb|ADY37211.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 103 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 G+ +R RR L M+Q++L + +G + + EKG + S I+ L Sbjct: 44 GEILRNRRKELKMTQKQLAQKIGKEQSYIARVEKGEVDMQLSSFFRIAHALNI 96 >gi|300853247|ref|YP_003778231.1| putative phage protein with HTH motif [Clostridium ljungdahlii DSM 13528] gi|300433362|gb|ADK13129.1| putative phage protein with HTH motif [Clostridium ljungdahlii DSM 13528] Length = 187 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G I+ R +G+SQ +LG +G T Q + EK +N L +IS+ L + Sbjct: 2 LGDNIKKFRTQIGISQRELGRRIGKTGQYISYLEKNMNTNPSLEVLNNISKELNVNTNDL 61 Query: 74 FDVSPTVCSDISSEENNVMD 93 + PT+ ++ E N + Sbjct: 62 --IKPTINIEMHESEKNSLQ 79 >gi|294630087|ref|ZP_06708647.1| PbsX family transcriptional regulator [Streptomyces sp. e14] gi|292833420|gb|EFF91769.1| PbsX family transcriptional regulator [Streptomyces sp. e14] Length = 230 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L Sbjct: 18 NLGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 77 Query: 74 F 74 + Sbjct: 78 Y 78 >gi|229188228|ref|ZP_04315304.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1] gi|228595248|gb|EEK52992.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1] Length = 65 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI R +SQEKL E +G++ + + E + I++VL + F Sbjct: 2 NRIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGKSVESIF 59 >gi|227545435|ref|ZP_03975484.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri CF48-3A] gi|300908481|ref|ZP_07125944.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri SD2112] gi|227184576|gb|EEI64647.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri CF48-3A] gi|300893888|gb|EFK87246.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri SD2112] Length = 293 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R +SQ +L L + Q V K+E G +L +++V + Sbjct: 8 QLLKLRTEKQLSQAELATRLFVPRQAVSKWENGDAEPSIDKLILLAKVFNVSLD 61 >gi|167924579|ref|ZP_02511670.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] Length = 81 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ IR RR+ L +SQE L I + K E+G V L I+ L S Sbjct: 17 VGRSIRARRLELDISQEALANIADIDRSHMGKIERGERNVTLLNLVKIARALSCRPSDL 75 >gi|167747600|ref|ZP_02419727.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662] gi|167652962|gb|EDR97091.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662] Length = 110 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 31/65 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR +R G++ ++L + + +++ E G L + + LE+ ++ Sbjct: 6 LGRKIREKRKQCGLTSQQLADLCHVHDGYIRQLESGKKVPSMPLLLSLCDELETSPNYLL 65 Query: 75 DVSPT 79 + + Sbjct: 66 EYAEA 70 >gi|157374197|ref|YP_001472797.1| XRE family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157316571|gb|ABV35669.1| transcriptional regulator, XRE family [Shewanella sediminis HAW-EB3] Length = 184 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R + G+SQ +L + G+T + EK S L+ + L + FF Sbjct: 5 IGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 64 Query: 75 DVSPTVCSD 83 + + S+ Sbjct: 65 SMEDSGGSE 73 >gi|150400183|ref|YP_001323950.1| cupin 2 domain-containing protein [Methanococcus vannielii SB] gi|150012886|gb|ABR55338.1| Cupin 2 conserved barrel domain protein [Methanococcus vannielii SB] Length = 192 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R GMS E L + + + ++ EKG + L I+ L + F Sbjct: 6 QLGSKITQLRESKGMSIEDLAKASDSSIELIECLEKGNLVPSLTPLLKIARALSVRLGTF 65 Query: 74 FDVSPTVCSDISSEENN 90 D +P I+ N Sbjct: 66 LDDAPQNGPVITKSGNY 82 >gi|110004082|emb|CAK98421.1| conserved hypothetical transcriptional regulator transcription regulator protein [Spiroplasma citri] Length = 177 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 40/81 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+L R ++ E+L +T + + E+ ++ L+ I EVL + ++ Sbjct: 1 MLLGEKIKLLRQKNNLTIEELANRCELTKGFISQLERDISSPSIETLESILEVLGTNLAD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF ++EE+ ++ Sbjct: 61 FFKQEKNRKFVYAAEEHYKVE 81 >gi|45358838|ref|NP_988395.1| hypothetical protein MMP1275 [Methanococcus maripaludis S2] gi|45047704|emb|CAF30831.1| hypothetical protein MMP1275 [Methanococcus maripaludis S2] Length = 184 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S E++ L I+ + Q YE+G + AS L I+ E + Sbjct: 6 KEIASRVRELRELSEISIEEMANHLQISPEIYQHYEEGTCDIPASVLYEIAHKFEVDMGL 65 Query: 73 FFDVSPT 79 T Sbjct: 66 LLTGEET 72 >gi|322812212|pdb|2XJ3|A Chain A, High Resolution Structure Of The T55c Mutant Of Cylr2. gi|322812213|pdb|2XJ3|B Chain B, High Resolution Structure Of The T55c Mutant Of Cylr2 Length = 66 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++L R +SQ +L L ++ Q + EK I+ L P+ F Sbjct: 4 NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQW 63 Query: 77 SPT 79 P Sbjct: 64 QPE 66 >gi|307128931|ref|YP_003880947.1| hypothetical protein Dda3937_03865 [Dickeya dadantii 3937] gi|306526460|gb|ADM96390.1| hypothetical protein Dda3937_03865 [Dickeya dadantii 3937] Length = 156 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R+ SQE+L E ++ + +Q+ E G R L I+ ++ + Sbjct: 4 IKSQRLARAWSQEQLAELSALSVRTIQRIENGE-RASLETLSAIAAAFGVNVTALMEEGS 62 Query: 79 TVCSDISS 86 S Sbjct: 63 EQAVSGES 70 >gi|270261480|ref|ZP_06189753.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044964|gb|EFA18055.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 185 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R LG+SQ + E G+T + E+ S LQ + V +S FF Sbjct: 9 GKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSAFFA 68 Query: 75 DVSPTVCSDISSEENNVMDF 94 + I + ++++ Sbjct: 69 EPEKPDEPRIVIDHEDLIEI 88 >gi|228969395|ref|ZP_04130242.1| hypothetical protein bthur0004_60930 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790357|gb|EEM38097.1| hypothetical protein bthur0004_60930 [Bacillus thuringiensis serovar sotto str. T04001] Length = 108 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + +++E+ I Sbjct: 3 HLSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKADPDADSIMNLAEIYNVSIDEL 62 Query: 74 F 74 F Sbjct: 63 F 63 >gi|228477808|ref|ZP_04062436.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|322374168|ref|ZP_08048701.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] gi|228250500|gb|EEK09714.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|321276873|gb|EFX53945.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] Length = 150 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 7/58 (12%), Positives = 25/58 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ R ++Q ++ E + + ++E G + ++++ ++ + Sbjct: 8 GDRLKELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPSLEAVVKLAKLFDTTTDYL 65 >gi|213019765|ref|ZP_03335569.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994671|gb|EEB55315.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 182 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 12/125 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++R R+ + + L I + + +YE+G + +L+ I+E L PI Sbjct: 13 QIAQKVRNWRLKGKYTLKDLVGKANINYHTLLRYEQGTCGIPTEKLKVIAEALSIPIRNL 72 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 F + D +++ + + I+ + I L +S+ + E+ Sbjct: 73 FPRRKVLREDSCFDKSKTQEM------------YNFIERTGGSKTIYALTKSVRAEEESN 120 Query: 134 RTIEE 138 Sbjct: 121 IKAAR 125 >gi|167648095|ref|YP_001685758.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350525|gb|ABZ73260.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 78 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G +R R G+SQE L + +G+ V + E+G+ ++ ++VL Sbjct: 12 LGINVRRLRKERGLSQEALADAVGLAPTYVGQIERGLRNPTLDVVERFADVLG 64 >gi|331086080|ref|ZP_08335163.1| hypothetical protein HMPREF0987_01466 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407003|gb|EGG86508.1| hypothetical protein HMPREF0987_01466 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 106 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G+S + LG + + K E G S +I + L+ FFD Sbjct: 9 KRLTQLRNKQGISARDMSLSLGQSESYINKIENGKALPSMSAFFYICDFLKIHPRDFFDE 68 Query: 77 SPTVCSDISSEENNVMDFIST 97 S + M+ +T Sbjct: 69 SDKNPATSQELTEKFMNLTTT 89 >gi|294789533|ref|ZP_06754768.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] gi|294482470|gb|EFG30162.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] Length = 122 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R LG++Q + E G++ + YE+ +++ A +L I + Sbjct: 8 GNRLKTERKKLGLTQAQAAEKCGVSARMWGDYERNISQPKAEQLFLFKNA-GIDIDYVMT 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 EN+ +S + L+L F Q + Sbjct: 67 GKNNNVETFRQPENS----LSNKE-LELLALFRQASE 98 >gi|302869357|ref|YP_003837994.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504168|ref|YP_004083055.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5] gi|302572216|gb|ADL48418.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410787|gb|ADU08904.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5] Length = 207 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 33/88 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +++R R G S E+L G++ + + E L +++ I+ Sbjct: 15 VARQVRDLRAARGWSFEELAGRSGVSKGMLVQIEGARTNPSIGTLCRVADAFGVSIARLL 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + +S+ + + + GL Sbjct: 75 EPAEQSTVRVSAADEAPVLWRGPNGGLA 102 >gi|257792281|ref|YP_003182887.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476178|gb|ACV56498.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 104 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 1 MVGNKKI--PNPV----DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 M N+K+ +P+ ++G R+ R G+SQ L E +G ++ E G+ V Sbjct: 4 MSKNEKMARKDPLVQRLSADLGSRLLDVRTSEGLSQTTLAEMVGTKHPRISNLEGGLVDV 63 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSD 83 S + ++ L+ D++ D Sbjct: 64 RLSDIVKLARALDVNPGELLDLAAYKLED 92 >gi|257790856|ref|YP_003181462.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474753|gb|ACV55073.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 261 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 14/114 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R +SQ +L LG++ Q V K+E + +L + ++ E + Sbjct: 6 NLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDDLVRGD 65 Query: 78 ----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 T I E DG D +R++ ++ + Sbjct: 66 LTGCATANEAIVEAEPASAATPVDKDGY----------DEHMRRRAWDVAAGVA 109 >gi|302546464|ref|ZP_07298806.1| putative helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302464082|gb|EFL27175.1| putative helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 295 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R+ RR I M+Q++L + G+ ++K E+G ++ ++ L + Sbjct: 7 RRVAYRRRIARMTQQELADAAGVHVGTLRKIERGARGASDDVIEALAAALGVDPA 61 >gi|228968830|ref|ZP_04129792.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790893|gb|EEM38532.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 133 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R MSQ L + +G+T + E G G I+ VL P+ F+ PT Sbjct: 40 LRGKKRMSQVALADKVGVTPGHIADLETGRRDPGGKLAFQIAIVLGFPMEHFY--LPTYL 97 Query: 82 SDISSEE 88 + S +E Sbjct: 98 QNASKKE 104 >gi|229127280|ref|ZP_04256276.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|228656113|gb|EEL11955.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] Length = 133 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R MSQ L + +G+T + E G G I+ VL P+ F+ PT Sbjct: 40 LRGKKRMSQVALADKVGVTPGHIADLETGRRDPGGKLAFQIAIVLGFPMEHFY--LPTYL 97 Query: 82 SDISSEE 88 + S +E Sbjct: 98 QNASKKE 104 >gi|166032732|ref|ZP_02235561.1| hypothetical protein DORFOR_02447 [Dorea formicigenerans ATCC 27755] gi|166027089|gb|EDR45846.1| hypothetical protein DORFOR_02447 [Dorea formicigenerans ATCC 27755] Length = 102 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q+ + +C+ ++ + YEK + +L I+++ E P+ + + + S Sbjct: 1 MTQKNVADCIHVSRSAIAGYEKKGRQPSHEKLTAIADLFEVPVDYLLNDEEDTITLSPSR 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVRSIVSSEKK 132 D D L L + + R +K ++L++ +SE Sbjct: 61 LTTNSD-----DELNLLLAYRSLSRSSKRDLKKYMKLLKEKDASESS 102 >gi|24374516|ref|NP_718559.1| prophage LambdaSo, Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] gi|24349105|gb|AAN56003.1|AE015737_1 prophage LambdaSo, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] Length = 272 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 13/104 (12%) Query: 15 VGKRIRLRRMILGM-SQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS- 71 VG+ I+ R+ G+ SQ L E G Q +V YE G V A + +++VL + Sbjct: 10 VGRNIKRLRLKAGIKSQAALAELCGWKSQSRVGNYEAGTRAVSAIDAETLAKVLNVTPAE 69 Query: 72 ----------FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F + S EE + LQ Sbjct: 70 ILYGENNKDDDFVSMPSAQYSSGPYEEEDPFQLFKPKQELQNAE 113 >gi|320093943|ref|ZP_08025774.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979126|gb|EFW10638.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 76 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V RI + R +S+ +L E LG+ +Q V E+G I+ E P+ Sbjct: 5 DDVVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFEVPVE 64 Query: 72 FFFDVSP 78 F + Sbjct: 65 SVFSLEE 71 >gi|291543302|emb|CBL16411.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 121 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ MSQ +L E I+ + + E G ++ S +I+E L+ Sbjct: 12 IGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSADVLL 71 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + + I E N D ++ Sbjct: 72 RTNTPEVNGIYQGEFN--DLLAD 92 >gi|266622898|ref|ZP_06115833.1| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288865341|gb|EFC97639.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 110 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 4/99 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFDV 76 RIR RR LG++ ++ E +G E+G + L ++ LE + F Sbjct: 11 RIRNRRKALGLTSAEVAEKIGRADHYYGDIERGTCGMSIDTLVELTRTLELSSDYILFGA 70 Query: 77 SPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDD 112 + +++ ++ D ++L +Y++ +++ Sbjct: 71 ENENGNSNAAKAYRILRKYDEQRQEHAVELMKYYLNLEE 109 >gi|261211609|ref|ZP_05925896.1| hypothetical protein VCJ_001872 [Vibrio sp. RC341] gi|260838959|gb|EEX65591.1| hypothetical protein VCJ_001872 [Vibrio sp. RC341] Length = 166 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R + Q ++ E +G+T Q K+E G N AS ++ ++E+L S Sbjct: 9 LKEMRERKQLKQSEVAEHVGVTAQTYMKWENGKNEPKASDIKKLAEILCVSES 61 >gi|239814884|ref|YP_002943794.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801461|gb|ACS18528.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 70 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + GKR+R R +SQE+ G+ V E+GV + ++ ++ L Sbjct: 3 SLSVRFGKRLRELRKERDLSQEEFAAHCGLDRTYVSGMERGVRNPSLAVIETLAGALGIR 62 Query: 70 ISFFF 74 + F Sbjct: 63 VEELF 67 >gi|56459168|ref|YP_154449.1| DNA-binding HTH domain-protein [Idiomarina loihiensis L2TR] gi|56178178|gb|AAV80900.1| Membrane associated protein containing xre-family DNA-binding HTH domain [Idiomarina loihiensis L2TR] Length = 136 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I+ R SQE+L G++ + +Q+ E G N+ L+ ++ V E +S + Sbjct: 2 IKKLRERKNWSQEQLAIMSGLSVRTIQRIESG-NKASMESLKSLASVFEVDVSKLTE 57 >gi|16080491|ref|NP_391318.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221311387|ref|ZP_03593234.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315714|ref|ZP_03597519.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320629|ref|ZP_03601923.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324914|ref|ZP_03606208.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|81556692|sp|P71049|SLRR_BACSU RecName: Full=HTH-type transcriptional regulator slrR gi|1495278|emb|CAA96488.1| hypothetical protein [Bacillus subtilis] gi|1762125|gb|AAB39888.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|1945689|emb|CAB08022.1| hypothetical protein [Bacillus subtilis] gi|2635951|emb|CAB15443.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 152 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+ IRL R G S +L G++ + K E+GV+ L+ +S LE ++ Sbjct: 2 IGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTEL 61 Query: 74 FDVSPTVCSDISSEENN 90 FD + IS E Sbjct: 62 FDAETMMYEKISGGEEE 78 >gi|150388221|ref|YP_001318270.1| XRE family plasmid maintenance system antidote protein [Alkaliphilus metalliredigens QYMF] gi|150389695|ref|YP_001319744.1| XRE family plasmid maintenance system antidote protein [Alkaliphilus metalliredigens QYMF] gi|150392083|ref|YP_001322132.1| XRE family plasmid maintenance system antidote protein [Alkaliphilus metalliredigens QYMF] gi|149948083|gb|ABR46611.1| plasmid maintenance system antidote protein, XRE family [Alkaliphilus metalliredigens QYMF] gi|149949557|gb|ABR48085.1| plasmid maintenance system antidote protein, XRE family [Alkaliphilus metalliredigens QYMF] gi|149951945|gb|ABR50473.1| plasmid maintenance system antidote protein, XRE family [Alkaliphilus metalliredigens QYMF] Length = 254 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I +GK I R M E+L + I Q ++ YE G + + + I + L Sbjct: 110 NIEIGKNITHVREDAKMDVEQLAAAINIKPQALKDYESGKKVIPSYVIHRICKELSVLPL 169 Query: 72 FFFDVSPTVCSDISSEENN 90 F D + + SE + Sbjct: 170 FLLDPEEVIDKEYKSENAD 188 Score = 42.1 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 8/102 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI +LG+ + GI+ + Y G A L +S+VL+ I + Sbjct: 8 VGKRIEKSLEVLGIKAVDVCRSSGISKNAMSNYINGNRVPNAEILVKLSDVLKVSIDWLL 67 Query: 75 ----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + I E D ++ + YF Q++D Sbjct: 68 TGKGKGPEKAANFIFQEPVIEQDLVAESEA----SYFHQVED 105 >gi|315283138|ref|ZP_07871397.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313613216|gb|EFR87101.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 423 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 1/98 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++ +++ + + I+ + E G+ L HI+ LE P Sbjct: 4 IGLRIKNIRKEKKLTLKEVAQGI-ISVPYLANIENGIKVASFETLMHIARRLEIPEEVLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 D+ E + + + + + +++ + +I + Sbjct: 63 MSEEETNKDLLREMDEIFELLVFSNPVEMEKRLNKIAE 100 >gi|87198393|ref|YP_495650.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134074|gb|ABD24816.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 76 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES- 68 + G ++ R G+SQ ++ +G+ V E+G+ + I++ LE Sbjct: 2 DIRKLFGTNVKRYREAAGLSQAEIAARMGVDRAYVSAIERGLQNATLLSIWEIAQALEVR 61 Query: 69 PISFFFDVS 77 P++ + Sbjct: 62 PVALLEEPD 70 >gi|66395950|ref|YP_240268.1| ORF085 [Staphylococcus phage 96] gi|66396319|ref|YP_240643.1| ORF072 [Staphylococcus phage 52A] gi|189427128|ref|YP_001949804.1| Cro-like protein [Staphylococcus phage phiMR25] gi|62636371|gb|AAX91482.1| ORF085 [Staphylococcus phage 96] gi|62636735|gb|AAX91846.1| ORF072 [Staphylococcus phage 52A] gi|116235519|gb|ABJ88854.1| Cro/CI family transcription regulator [Staphylococcus phage 80] gi|189339039|dbj|BAG48103.1| Cro-like protein [Staphylococcus phage phiMR25] Length = 69 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 30/54 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R M+Q+ + + LG+T Q V ++EK + +L ++++ + + + Sbjct: 10 VKVWRTNSNMTQQDVADKLGVTKQSVIRWEKDDAELKGLQLYALAKLFNTEVDY 63 >gi|300783560|ref|YP_003763851.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793074|gb|ADJ43449.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 474 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 5/104 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R MSQ L L I+ + + E + L I++ FF + Sbjct: 7 GARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVDTEFFAN 66 Query: 76 VSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +E +D ++T + +L I V Sbjct: 67 NDTSRLVADVKEALLDEALGID-VTTGELNELATNLPAIAQALV 109 >gi|294139287|ref|YP_003555265.1| hypothetical protein SVI_0516 [Shewanella violacea DSS12] gi|293325756|dbj|BAJ00487.1| hypothetical protein [Shewanella violacea DSS12] Length = 239 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 3/103 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ G SQ +L E GI + K E + + + + L + Sbjct: 1 MTLGQQLKQFRVDRGFSQPELAELAGIEQSYLSKLENDKSIPSNDIFRALLKALTITVEE 60 Query: 73 F---FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F FDV I + + + + R ++ I Sbjct: 61 FIHRFDVMKDRFQLIQIPDIELKLAQQEQELIHNLRRYLYIAS 103 >gi|262044360|ref|ZP_06017423.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038248|gb|EEW39456.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 165 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 18/100 (18%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ SQE+L E G++ + +Q+ E G R G L ++ V E ++ ++ Sbjct: 10 NQVKQLRLQRAWSQEQLAEMAGLSVRTIQRIENGE-RPGLETLSALAAVFEVTVA---EI 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + + +D +I++ K R Sbjct: 66 GGEARREDAPGQEASLDL--------------RIEEAKAR 91 >gi|326204985|ref|ZP_08194836.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984851|gb|EGD45696.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 206 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ R I +SQE+LG+ LG+ + +E ++ ++E+ + Sbjct: 133 GIRLKRLRRIHNISQEELGKVLGVGRTAIANWETNQTEPTGENIKKLAELFRVTTDYL 190 >gi|297560997|ref|YP_003679971.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845445|gb|ADH67465.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 187 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R R G+S L E G++ + + E G + AS L ++ L +S Sbjct: 13 LRELRRARGLSGGALAELSGVSRGMISRIENGEAQPTASLLGRLAAALGITLS 65 >gi|291287634|ref|YP_003504450.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884794|gb|ADD68494.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 191 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 12/96 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-- 72 + R++ R L MSQ G +G + V ++E G ++ + HI E + + Sbjct: 6 IADRLKELRKALDMSQTDFGRKIGKNYHSVMRWELGRVLPPSNVIVHICESFDVSPDWLK 65 Query: 73 ------FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F + P I+ E DF LQ Sbjct: 66 SGKGKMFLNSDPY----IAEAETAPYDFQQEKISLQ 97 >gi|162448725|ref|YP_001611092.1| Cro/CI family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159307|emb|CAN90612.1| transcriptional regulator, Cro/CI family [Sorangium cellulosum 'So ce 56'] Length = 92 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +R R G++QE+L E GI + +Q E G + L ++ L+ Sbjct: 12 YIAANLRRLRQQRGITQEQLAEAAGIELRTMQAIEVGRQSMSLGTLVRLANALDVSPG 69 >gi|86157573|ref|YP_464358.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|197121618|ref|YP_002133569.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220916382|ref|YP_002491686.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|85774084|gb|ABC80921.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] gi|196171467|gb|ACG72440.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219954236|gb|ACL64620.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 69 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R R +SQ+ L + +GI+ V E+G ++ +++ L P + Sbjct: 10 NVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPA 63 >gi|37527570|ref|NP_930914.1| hypothetical protein plu3706 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527578|ref|NP_930922.1| hypothetical protein plu3715 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787005|emb|CAE16079.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787013|emb|CAE16087.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 120 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 +R+ R G++Q+ L + G+ Q+++YE G + ++ ++ L FD Sbjct: 5 ERLTTLRKERGLTQQALADMAGVAVLQIRRYEGGSAQPTLEVIRRLAISLGVSADMLVFD 64 Query: 76 VSPTVCSD 83 S+ Sbjct: 65 EQERGPSE 72 >gi|83747823|ref|ZP_00944856.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|207739254|ref|YP_002257647.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] gi|83725470|gb|EAP72615.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|206592627|emb|CAQ59533.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] Length = 201 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 79 Query: 75 DVSPTVCSDIS 85 Sbjct: 80 AGGDGERPGTG 90 >gi|300932634|ref|ZP_07147890.1| XRE family transcriptional regulator [Corynebacterium resistens DSM 45100] Length = 88 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK +P+ R+++ R+ MS+ +L + + + Q V E+G + Sbjct: 1 MSPKKKPTSPIH----NRVKVLRIERDMSRAQLAQLIEVNPQTVGALERGDHSPSLDLAF 56 Query: 61 HISEVLESPISFFF 74 I EV E P+ F Sbjct: 57 RICEVFELPVEMVF 70 >gi|281490797|ref|YP_003352777.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374555|gb|ADA64075.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 68 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K++++ R+ MSQ L + +G T Q + E G I VL+ ++ F Sbjct: 4 KKMKMARIEAEMSQADLADKVGATRQTIGLIESGKFNPSLRLCIDICRVLKKTLNDIF 61 >gi|268592540|ref|ZP_06126761.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311950|gb|EFE52403.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 186 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 8/124 (6%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +P+P + K + R G+S +L GI + + E G L + Sbjct: 2 NLPSPPIELISKALVRERQKSGLSLSELSRKAGIAKSTLSQLESGSGNPSIETLWALCVA 61 Query: 66 LESPISFFFDVSPTVCS--------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 L+ P + + + +S+E N + F+ + R + R Sbjct: 62 LDIPFARLIEEKQEAVTVIRHGEAIPVSAEHANYLAFLLSSAPADSRRDIYTVVAQPGRD 121 Query: 118 KIIE 121 +I E Sbjct: 122 RISE 125 >gi|268679748|ref|YP_003304179.1| helix-turn-helix domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617779|gb|ACZ12144.1| helix-turn-helix domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 88 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+ ++ R G++Q +LG LG I+ +V +K N L I+ +LE Sbjct: 20 IGRNVKKLRQKKGLTQMELGLALGHTGVGTISVSEVYYNKKHFN---LEHLYKIAHILEV 76 Query: 69 PISFFF 74 I FF Sbjct: 77 DICEFF 82 >gi|227533383|ref|ZP_03963432.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188949|gb|EEI69016.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 202 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N K++ R+ M+Q L E L ++ V +E N + I+ + E + Sbjct: 1 MNFSKQLHQIRLAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDT 60 Query: 73 FFDVSPTVCSDISSEEN 89 P + + + Sbjct: 61 LILDDPKLNEKLIQDSK 77 >gi|226807655|ref|YP_002791349.1| HipB [Enterobacter cloacae] gi|226809965|ref|YP_002791659.1| HipB [Enterobacter cloacae] gi|226425880|gb|ACO53973.1| HipB [Enterobacter cloacae] gi|226426191|gb|ACO54283.1| HipB [Enterobacter cloacae] Length = 98 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R G++Q+ L E LG+T Q + E RL + +L ISF Sbjct: 22 RKANGLTQKDLSERLGVTQQTYSRLEANPASASIERLFKVFSILGVKISF 71 >gi|170697588|ref|ZP_02888677.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170137475|gb|EDT05714.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 80 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +PV + +G IR R MSQE+L + + + E+G N V RL+ I++ L Sbjct: 10 DPVLVALGHAIRRIRKERDMSQEQLALSAEVDMSYLGRVERGDNNVAVLRLKRIADALG 68 >gi|170016379|ref|YP_001727298.1| ABC transporter ATPase [Leuconostoc citreum KM20] gi|169803236|gb|ACA81854.1| ATPase component of ABC transporters with duplicated ATPase domains [Leuconostoc citreum KM20] Length = 299 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ + R +SQE L + L ++ Q V K+E G +L +S++ + F Sbjct: 7 SQLSVLRQRKRISQEVLAQKLFVSRQSVSKWENGDAEPDIDKLISLSDIFAVDLDFL 63 >gi|153810945|ref|ZP_01963613.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174] gi|149832833|gb|EDM87916.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174] Length = 71 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI+ R+ +SQ+K+GE L I+ + YE G + L +++ ++ I + Sbjct: 4 QRIQDLRIDSDLSQKKIGEILHISQRSYSHYETGSRNIPIEMLIRLADYYDTTIDYL 60 >gi|30019992|ref|NP_831623.1| transcriptional regulator [Bacillus cereus ATCC 14579] gi|31415744|ref|NP_852484.1| Transcriptional regulator [Bacillus phage phBC6A51] gi|29895537|gb|AAP08824.1| Transcriptional regulator [Bacillus cereus ATCC 14579] Length = 112 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 8/111 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R G + +++ + +G YE + A L ++++ ++ F Sbjct: 1 MDIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADIFDTTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST----PDGLQLNRYFIQIDDVKVRQKI 119 + + NV DF+ DG+++ +I +V +RQ + Sbjct: 61 IL----GRTENPNGLNFNVKDFLDQGRLHSDGVEITDEQAEIANVLLRQLL 107 >gi|330501217|ref|YP_004378086.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328915503|gb|AEB56334.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 182 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLK---KVLSGIPMS 57 Query: 72 F--FFDVSPTVCSDI 84 FF + + I Sbjct: 58 LVEFFSLDMEQENQI 72 >gi|315640497|ref|ZP_07895605.1| DNA-binding protein [Enterococcus italicus DSM 15952] gi|315483701|gb|EFU74189.1| DNA-binding protein [Enterococcus italicus DSM 15952] Length = 194 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N K+++ R + G SQE L E + +T Q + K+E L +S + + + Sbjct: 1 MNFSKQLKKYRELNGYSQEILAEKIYVTRQTISKWENDKTYPDIHNLIALSVLFDITLD 59 >gi|304314848|ref|YP_003849995.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588307|gb|ADL58682.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 182 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R + ++++++ L I + ++YE G + AS L I+ + + Sbjct: 6 KEIGSRVRELRELSEITEDEMASYLNIDVETYRRYETGEEDIPASILFEIAHKMGVDMGL 65 Query: 73 FFDVSPT 79 T Sbjct: 66 LLTGEET 72 >gi|299065294|emb|CBJ36462.1| putative transcription regulator protein [Ralstonia solanacearum CMR15] Length = 109 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P P+ +G+RI+L R SQE L + + E+G+ L +I Sbjct: 9 STSRPAPILSALGERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIETLANIC 68 Query: 64 EVLESPISFFFDVSPTVC 81 L ++ F + Sbjct: 69 YALNVTLAELFGPMDGIS 86 >gi|294811530|ref|ZP_06770173.1| HTH_3 domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|326440083|ref|ZP_08214817.1| hypothetical protein SclaA2_03409 [Streptomyces clavuligerus ATCC 27064] gi|294324129|gb|EFG05772.1| HTH_3 domain-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 220 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 10/108 (9%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R M+Q ++ E L Q V G N Q ++ + +F T + Sbjct: 91 RTGKRMTQTEVAEALKSNKQHVGNLRAGRNNPSIVLAQKYADFFGVDVGYFSAGPLTAVA 150 Query: 83 -------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D ++ + L+L R + D +VRQ + LV Sbjct: 151 SCFGHTRDFLVLADDAPQVVEATANLRLLRA---LADRRVRQVVGRLV 195 >gi|189463133|ref|ZP_03011918.1| hypothetical protein BACCOP_03844 [Bacteroides coprocola DSM 17136] gi|189430112|gb|EDU99096.1| hypothetical protein BACCOP_03844 [Bacteroides coprocola DSM 17136] Length = 68 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++++ R +S E+L + G+ +Q+ + E+ ++ + L ++ L + F Sbjct: 7 IGEKVKSLRTAKEISLEELADRTGLAVEQITRIEENIDIPSLAPLVKLARALGVRLGTFL 66 Query: 75 DV 76 D Sbjct: 67 DD 68 >gi|160942173|ref|ZP_02089488.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC BAA-613] gi|158435064|gb|EDP12831.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC BAA-613] Length = 204 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 21/90 (23%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ ++Q++L E L ++ + K+E G L+ IS I Sbjct: 5 EKLQQLRIGKNLTQQQLAEQLYVSRTAISKWESGKGYPNIESLKCISRFFSITID----- 59 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + +S+ + + L Sbjct: 60 ----------------ELLSSEELITLAEA 73 >gi|317481961|ref|ZP_07940986.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916528|gb|EFV37925.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 362 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|296453479|ref|YP_003660622.1| transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182910|gb|ADG99791.1| Predicted transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] Length = 356 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|291517434|emb|CBK71050.1| Predicted transcriptional regulators [Bifidobacterium longum subsp. longum F8] Length = 356 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|257790508|ref|YP_003181114.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474405|gb|ACV54725.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 64 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+ ++ R L M+Q +L + LG++F V ++E G + + + ES Sbjct: 1 MTFGEMVKYARKQLSMTQTELAKALGVSFATVNRWENGQVNPSSLAQKAFEDFCESSFIS 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|255324440|ref|ZP_05365557.1| transcriptional regulator, XRE family [Corynebacterium tuberculostearicum SK141] gi|255298346|gb|EET77646.1| transcriptional regulator, XRE family [Corynebacterium tuberculostearicum SK141] Length = 69 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R L +SQ +L + G++ Q + E+G I L + F Sbjct: 8 VRKWRRWLELSQAELADKAGVSRQTIANIERGNYSPSVHLALDICHELGKTVEEIFGAE 66 >gi|227821987|ref|YP_002825958.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227340987|gb|ACP25205.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 466 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G R+R R LG++Q + L ++ + E+ V A L +++ + +S Sbjct: 6 IYLGPRLRRLRKDLGLTQAHMAADLDVSPSYIALMERNQRPVTAEVLLRLAKAYKIDLSS 65 Query: 73 FFDVS 77 + S Sbjct: 66 LAEES 70 >gi|227545776|ref|ZP_03975825.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213892|gb|EEI81731.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 362 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|291457121|ref|ZP_06596511.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291380956|gb|EFE88474.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 356 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|223039767|ref|ZP_03610052.1| repressor [Campylobacter rectus RM3267] gi|222878959|gb|EEF14055.1| repressor [Campylobacter rectus RM3267] Length = 82 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 29/54 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R +G++Q++ + LGI+ + Q+YE + + +L IS+ L + Sbjct: 7 NLKEVRDKIGLTQKETADKLGISLRTYQRYELDGDGIDYKKLLEISKKLGVSMD 60 >gi|187934809|ref|YP_001885121.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722962|gb|ACD24183.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] Length = 148 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R L ++QE+L LGI+ + E+ G L +++ + + S Sbjct: 5 KVKYLRNNLNLTQEELANKLGISQSSIGMIERNKRPAGRKMLIKLADFFNVTVDYLLSDS 64 Query: 78 PTVCS 82 S Sbjct: 65 DENNS 69 >gi|220911413|ref|YP_002486722.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858291|gb|ACL38633.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 198 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R++ R+ ++ L GI+ + + E G R L +++ + P+ Sbjct: 12 VGPRLKALRLRRDVTLTALAAATGISVSTLSRLESGQRRPNLELLLPLAQAHQVPLD 68 >gi|119475767|ref|ZP_01616120.1| hypothetical protein GP2143_18146 [marine gamma proteobacterium HTCC2143] gi|119451970|gb|EAW33203.1| hypothetical protein GP2143_18146 [marine gamma proteobacterium HTCC2143] Length = 279 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 27/52 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 G+ ++ R + +SQE+L L + + + + E G +R + Q I+ LE Sbjct: 11 GRFLKFWRGVHSLSQEELAHRLDSSTRHISRLENGSSRPSENMAQDIAAALE 62 >gi|111017888|ref|YP_700860.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110817418|gb|ABG92702.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 211 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + +RIR R+ G S + L ++ + + E G R+ +L I+ L + + Sbjct: 25 LDSVIRQRIRGLRLARGWSLDVLAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTL 84 Query: 71 SFFFD 75 + Sbjct: 85 DQLVE 89 >gi|108758632|ref|YP_630926.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] gi|108462512|gb|ABF87697.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] Length = 116 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 2/87 (2%) Query: 15 VGKRIRLRRMIL--GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR R +QE+L E I+ + E+G L ++ L + Sbjct: 8 IGQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVPHVETLAALANALGVSLGE 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 F + + + DF Sbjct: 68 LFTGTEQTLAQTEDLLRPLSDFARARG 94 >gi|92112522|ref|YP_572450.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795612|gb|ABE57751.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 178 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+P + V +R R G S L E I+ + + E G L ++ L Sbjct: 1 MPSPTPVIV-ANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTL 59 Query: 67 ESPIS 71 S Sbjct: 60 GVTFS 64 >gi|78221357|ref|YP_383104.1| putative prophage repressor [Geobacter metallireducens GS-15] gi|78192612|gb|ABB30379.1| putative prophage repressor [Geobacter metallireducens GS-15] Length = 216 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 14/126 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +P P + G+RI+ R+ G++Q++ + LGI + E+ + L Sbjct: 1 MAVSPIVPTP---STGRRIKEIRINKGLTQKEFADSLGIVQGFLSGIEREKKTPSDTLLI 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP--DGLQLNR----YFI-QIDDV 113 + + E S+ + ++ ++P +G+ L F ++ + Sbjct: 58 ALCNLYEISPSWL----ASGEGEMYRTPRRAGQPATSPGGEGIPLLERIGPEFPHRVGED 113 Query: 114 KVRQKI 119 +R ++ Sbjct: 114 DIRDRV 119 >gi|53690271|ref|ZP_00121920.2| COG1396: Predicted transcriptional regulators [Bifidobacterium longum DJO10A] gi|189439959|ref|YP_001955040.1| Xre family transcriptional regulator [Bifidobacterium longum DJO10A] gi|189428394|gb|ACD98542.1| Xre-type transcriptional regulator [Bifidobacterium longum DJO10A] Length = 362 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDL 61 >gi|304398075|ref|ZP_07379950.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304354361|gb|EFM18733.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 155 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R + R+ SQE+L E G++ + VQ+ E G R G L ++ V E ++ Sbjct: 5 NRFKEHRLARAWSQEQLAEMAGLSTRTVQRIENGE-RPGLETLSALAAVFEVNVADL--T 61 Query: 77 SPTVCSDISSEEN 89 P D + ++ Sbjct: 62 GPQNGEDQALDQR 74 >gi|261345533|ref|ZP_05973177.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566582|gb|EFB72117.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 78 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 32/60 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ R +R+ ++ ++ + + ++ QQ+ +YE+GV + + EVL+ Sbjct: 4 INAVLGEFFRSKRISESLTGIEVAKKMSVSQQQISRYERGVCCLSIETILRYCEVLDISP 63 >gi|218510506|ref|ZP_03508384.1| XRE family transcriptional regulator [Rhizobium etli Brasil 5] Length = 468 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 8/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+R R LG++Q + L ++ V E V A L ++ + +S Sbjct: 9 VYLGPRLRRLRKDLGLTQAMMASDLEVSPSYVALMEGNQRPVTAELLLRLARTYKIDMSV 68 Query: 73 FFDVS-PTVCSDISSEENNVM--DFISTP-DGLQLNRYFIQIDDVKVRQKIIELVR--SI 126 D S P + + S + + D +P + + F + +R + + + Sbjct: 69 LADDSTPELLGRLQSTIKDPIFADIEISPLEAADVLSSFPGFAEAMLR--LYTAYKEEQL 126 Query: 127 VSSEKKYRTIEE 138 ++++ ++ Sbjct: 127 ALADQRQVALDR 138 >gi|139438088|ref|ZP_01771641.1| Hypothetical protein COLAER_00629 [Collinsella aerofaciens ATCC 25986] gi|133776285|gb|EBA40105.1| Hypothetical protein COLAER_00629 [Collinsella aerofaciens ATCC 25986] Length = 275 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R ++QE+L L +T Q V ++E+G G ++ I+ V P+ ++ Sbjct: 5 EKLIAVRRAHHLTQEQLATKLFVTRQAVSRWERGEVTPGIDMMKLIAAVTGEPLPHLLEM 64 Query: 77 SPTVCS 82 C Sbjct: 65 PEHYCQ 70 >gi|323703832|ref|ZP_08115468.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323531189|gb|EGB21092.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 70 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 28/54 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R G++Q KL E G++ + + E+G + ++ +++ L +S Sbjct: 2 KLQKYREDQGLTQAKLAEKSGVSQAYICELEQGKKQPSVFIVKKLAKALGISVS 55 >gi|299823094|ref|ZP_07054979.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|307069497|ref|YP_003877975.1| transcriptional regulator [Listeria grayi] gi|299815503|gb|EFI82742.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|306480778|emb|CBV37319.1| transcriptional regulator [Listeria grayi] Length = 67 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R +SQ+ L E L ++ Q + EKG I++ E+ I F Sbjct: 7 VKQLREDRNLSQKDLAEALEVSRQTIHAIEKGKYNPSLELSLCIAKYFETSIENIF 62 >gi|298345338|ref|YP_003718025.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063] gi|315655757|ref|ZP_07908655.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] gi|298235399|gb|ADI66531.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063] gi|315489821|gb|EFU79448.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] Length = 112 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+R R G+SQ +L + +G T Q + E + + I + L + F Sbjct: 53 ERMRAARKEAGLSQAELAKDVGATRQTICSIEASNYNPSLNLCKLICKKLGKTLDELF 110 >gi|225017776|ref|ZP_03706968.1| hypothetical protein CLOSTMETH_01705 [Clostridium methylpentosum DSM 5476] gi|224949427|gb|EEG30636.1| hypothetical protein CLOSTMETH_01705 [Clostridium methylpentosum DSM 5476] Length = 106 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R + R ++Q ++ E LGIT E G + L ++ + + PI FD Sbjct: 2 RFKELRNKRDLTQLEVAEYLGITRAAYTNIENGKREADYNTLTMLARLYKVPIGDLFDFD 61 >gi|224024015|ref|ZP_03642381.1| hypothetical protein BACCOPRO_00732 [Bacteroides coprophilus DSM 18228] gi|224017237|gb|EEF75249.1| hypothetical protein BACCOPRO_00732 [Bacteroides coprophilus DSM 18228] Length = 106 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N+G IR R+ G++QE+LGE +G+ Q+ K E+G + + + + L S Sbjct: 7 NIGLMIRNERLRKGLTQEELGERVGVGKAQISKIERGK-GLTIKTVTKVLDALGMSAS 63 >gi|254488462|ref|ZP_05101667.1| DNA-binding protein [Roseobacter sp. GAI101] gi|214045331|gb|EEB85969.1| DNA-binding protein [Roseobacter sp. GAI101] Length = 190 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ + L + L + + + E+ ++ + L+ +++ L +S F Sbjct: 12 LGADLRALRKARGLTLQGLADRLNRSVGWLSQVERDLSDPAITDLRQMAQALGVSVSMLF 71 Query: 75 DVSPTVCSDIS 85 + + Sbjct: 72 RHAAAPVHEAG 82 >gi|210614889|ref|ZP_03290388.1| hypothetical protein CLONEX_02602 [Clostridium nexile DSM 1787] gi|210150531|gb|EEA81540.1| hypothetical protein CLONEX_02602 [Clostridium nexile DSM 1787] Length = 42 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 23/40 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 + +G IR R M+QE++ LG+T V K+E GV+ Sbjct: 1 MQIGTVIRKYRKEKNMTQEEMASYLGVTAPAVNKWENGVS 40 >gi|229917145|ref|YP_002885791.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229468574|gb|ACQ70346.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 69 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++Q L E +G+T Q + EKG HI+ V E P+ F + Sbjct: 5 NRVKELRARHQLTQGDLAEKVGVTRQTIISLEKGSYTPSLMLAMHIARVFEEPVESIFTI 64 Query: 77 SPTV 80 Sbjct: 65 EEES 68 >gi|254249104|ref|ZP_04942424.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124875605|gb|EAY65595.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 109 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G +R R SQE+L E G+ V + E+G I+ + IS Sbjct: 43 HFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSIS 100 >gi|114798978|ref|YP_761236.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739152|gb|ABI77277.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 69 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+R R G SQE+ + G+ V E+GV S L+ +++ L+ +S Sbjct: 8 GKRLRQLREERGWSQEEFADRAGLHRTYVSAVERGVRNPTLSVLERLAKALDIKLS 63 >gi|106879454|emb|CAJ20007.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 185 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG ++R R G+S +L G++ + E G + I+ L P+ Sbjct: 9 VTVGAQVRRLREFRGLSVAELSRLSGVSRATLSMLESGRGNPTIETVSAIAVALRLPLGD 68 Query: 73 F 73 Sbjct: 69 L 69 >gi|91778751|ref|YP_553959.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691411|gb|ABE34609.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 190 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D + +R+R R S + L G++ + + E AS L + Sbjct: 9 NAIDRRIAQRLRALRAERNWSLDDLARLSGVSRATLSRLENAAVSPTASVLGKLCVAYGL 68 Query: 69 PIS 71 P+S Sbjct: 69 PMS 71 >gi|332685598|ref|YP_004455372.1| XRE family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332369607|dbj|BAK20563.1| transcriptional regulator, XRE family [Melissococcus plutonius ATCC 35311] Length = 193 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + K ++ +R G +Q+++ + L I+ Q + +E + L +S+ + + Sbjct: 1 MLLSKVLKKKRQERGETQQQVADMLHISRQSISNWENNKSYPDVPTLIELSQYFDFSLD 59 >gi|325264148|ref|ZP_08130880.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] gi|324030632|gb|EGB91915.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] Length = 189 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +IR R ++ ++LG+ G++ + E+ LQ I VLE + Sbjct: 17 VGGKIRALRKEKDITLKQLGKETGLSIGYLSNLERDACSPTLDNLQKICGVLEISLIELL 76 Query: 75 DVSPTVCSDISSEENNVM 92 D I EE V+ Sbjct: 77 DGMNQGRRVIRKEERKVV 94 >gi|290962090|ref|YP_003493272.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260651616|emb|CBG74740.1| putative transcriptional regulatory protein [Streptomyces scabiei 87.22] Length = 190 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 25/75 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ + I + L I+ D Sbjct: 13 RNVKRWRTERGFTLDALASRAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSITTLLDY 72 Query: 77 SPTVCSDISSEENNV 91 I E V Sbjct: 73 ERGPRVRIVPAEQVV 87 >gi|239631261|ref|ZP_04674292.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525726|gb|EEQ64727.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 222 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G+++ R M+QE L L +T Q + +E+ + + L +S+V ++ + Sbjct: 21 MKFGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLD 79 >gi|154484771|ref|ZP_02027219.1| hypothetical protein EUBVEN_02489 [Eubacterium ventriosum ATCC 27560] gi|149734619|gb|EDM50536.1| hypothetical protein EUBVEN_02489 [Eubacterium ventriosum ATCC 27560] Length = 70 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK+++ + G +Q+ + + + + E G ++ + L ++ VL + + + Sbjct: 9 IGKKLKEIQTHKGFTQKFVASSVKVNTSHISNIENGKVKISLTTLVNVCNVLGTTVDY 66 >gi|125623644|ref|YP_001032127.1| hypothetical protein llmg_0793 [Lactococcus lactis subsp. cremoris MG1363] gi|124492452|emb|CAL97394.1| CI [Lactococcus lactis subsp. cremoris MG1363] gi|300070411|gb|ADJ59811.1| hypothetical protein LLNZ_04110 [Lactococcus lactis subsp. cremoris NZ9000] Length = 165 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 31/82 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R +SQ+ L + +G T + ++E G + + +L Sbjct: 8 ERLKEARKAANLSQQALADKIGRTKSTISRWESGERNPKMFEMVELENILGIQARDLMFG 67 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + I + + V ++ P Sbjct: 68 EQEITDTILPKISQVSSELTKP 89 >gi|153002768|ref|YP_001368449.1| XRE family transcriptional regulator [Shewanella baltica OS185] gi|160877511|ref|YP_001556827.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|151367386|gb|ABS10386.1| transcriptional regulator, XRE family [Shewanella baltica OS185] gi|160863033|gb|ABX51567.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|315269711|gb|ADT96564.1| helix-turn-helix domain protein [Shewanella baltica OS678] Length = 68 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I G ++R R LG+SQ+K+ I V + E+G + + ++EVL I Sbjct: 6 IQFGAKLREERKRLGISQDKMALLAEIDRSYVGRIERGEVNITLEKAYQLAEVLGCDI 63 >gi|146300851|ref|YP_001195442.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155269|gb|ABQ06123.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 121 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I++ R + +QE + LGIT K EKG + V +L+ I++V E + Sbjct: 8 NIKIIRELKNYTQEYMALRLGITQAGYSKIEKGSSTVSFEKLEEIAQVFEMDV 60 >gi|77412497|ref|ZP_00788797.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] gi|77161448|gb|EAO72459.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] Length = 358 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I L+R +GM+QE L + L +T + K+E L ++ + + + Sbjct: 2 LGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAXPDIDYLILMANLFDISLDDLV 61 Query: 75 DVSPTVCSD 83 T+ D Sbjct: 62 GYQKTLSDD 70 >gi|317491327|ref|ZP_07949763.1| cupin domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920874|gb|EFV42197.1| cupin domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 185 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKR+ R LG+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSHIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|296156511|ref|ZP_06839349.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893110|gb|EFG72890.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 285 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P P D +G +R R I G+SQ L G++ + + E G + L I++ Sbjct: 8 KNAP-PND--LGVLLRHWRDIRGISQLDLSFRAGVSQRHISFIESGRSAPSRQMLMDIAQ 64 Query: 65 VLESPI 70 L+ P+ Sbjct: 65 TLDIPL 70 >gi|239927788|ref|ZP_04684741.1| hypothetical protein SghaA1_06176 [Streptomyces ghanaensis ATCC 14672] Length = 293 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R +SQ +L + + + E G +R + ++E L+ P+ Sbjct: 35 VGPLLRAWREQRRISQLELALRADSSARHISFIETGRSRPSEEMVLRLAEHLDVPV 90 >gi|258517409|ref|YP_003193631.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257781114|gb|ACV65008.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 218 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI+ R L ++Q++ + L I + EKG S + I Sbjct: 1 MAIGERIKSLRKFLKLTQQQFADALDIDQGHIAGIEKGSKNPSKSLQKVICLTFYV 56 >gi|197303602|ref|ZP_03168640.1| hypothetical protein RUMLAC_02330 [Ruminococcus lactaris ATCC 29176] gi|197297336|gb|EDY31898.1| hypothetical protein RUMLAC_02330 [Ruminococcus lactaris ATCC 29176] Length = 255 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I R+ G+SQ+ L + +T Q V ++E G L+ +S+ + I+ Sbjct: 7 IYGLRVKKGLSQDALARKVMVTRQAVSRWENGETVPNTETLKLLSKEFDVSIN 59 >gi|170728343|ref|YP_001762369.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813690|gb|ACA88274.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 68 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I G ++R +R LG+SQ+KL I + E+G + + ++EVL + Sbjct: 6 IQFGLKLREKRKELGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLGCEV 63 >gi|116695165|ref|YP_840741.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113529664|emb|CAJ96011.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 300 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +R R G SQ L G++ + + E G R + ++E L P+ Sbjct: 21 LRYWRSKRGYSQLALSLAAGVSQRHISFLESGRARPSREMVLALAERLGVPL 72 >gi|19746131|ref|NP_607267.1| repressor protein [Streptococcus pyogenes MGAS8232] gi|19748307|gb|AAL97766.1| putative repressor protein [Streptococcus pyogenes MGAS8232] Length = 232 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +++ R+ G++Q +LG L + + +EKG N L + + F Sbjct: 4 GHQLKTARLSKGITQSELGRLLHVNKMTISNWEKGKNIPNEKHLNALLHLFNVTSDCF 61 >gi|288574560|ref|ZP_06392917.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570301|gb|EFC91858.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 134 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G RI+L R LGM+Q +L E I+ VQ E L + ++L+ Sbjct: 27 GLRIKLLRESLGMTQLELAEKADISRTYVQALEGNRKTPSVKLLGKLGDILKVDPG 82 >gi|295838058|ref|ZP_06824991.1| DNA-binding protein [Streptomyces sp. SPB74] gi|197699989|gb|EDY46922.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 400 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 13/119 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS---- 71 G RI+ R ++Q+ L + G+++ V K EK + + I+ L ++ Sbjct: 16 GTRIKRLRQERHLTQKALADLAGLSYSTVTKTEKALIPLTPHVTACIARALRVDVAAITG 75 Query: 72 --FFFDVSPTVCS---DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ ++ E +V D + PD R + Q+D ++++ LVR+ Sbjct: 76 QPYYTELRQDELDVLIRPIREALDVYDLGADPDVHP--RPYEQLDSET--EELLGLVRA 130 >gi|229581606|ref|YP_002840005.1| transcriptional regulator, XRE family [Sulfolobus islandicus Y.N.15.51] gi|228012322|gb|ACP48083.1| transcriptional regulator, XRE family [Sulfolobus islandicus Y.N.15.51] Length = 164 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R LG+SQ++L + L ++ ++++E G + S+ + + ++L + + + Sbjct: 82 IKNAREQLGISQQQLAQKLKVSENIIKRFESGKLKPTISQARQLEKILGIKLVTPLE-NE 140 Query: 79 TVCSDISSEENNVMDFISTPDG 100 + E + D ++ +G Sbjct: 141 ESEKEFDETELTLGDVVNIKEG 162 >gi|94990904|ref|YP_599004.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94544412|gb|ABF34460.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] Length = 413 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 11/65 (16%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI-----------SEVLE 67 ++ R G+ Q++ +C+GI+ + +YE G ++ + Q + S L+ Sbjct: 6 LKKFRKKSGLKQKEFAKCIGISQAMLSQYESGKKKLSLEKFQEMKTHFGYLTDNDSSRLQ 65 Query: 68 SPISF 72 I + Sbjct: 66 VTIDY 70 >gi|85373672|ref|YP_457734.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594] gi|84786755|gb|ABC62937.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594] Length = 207 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + I++ R+ G +Q++LGE +G+ + K E G + S L I+ L+ Sbjct: 8 IAASIKVARIAKGFTQKQLGERVGLPQSHISKIEGGNVDLQISSLVEIARALD 60 >gi|78355603|ref|YP_387052.1| MerR family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218008|gb|ABB37357.1| transcriptional regulator, MerR family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 189 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R GM++E+L E G+ + E+ LQ I+ L + F Sbjct: 6 LGARICKFREERGMTREELAEAAGLGADFITALEEEDLYPSIGPLQKIARALNVRLGTFM 65 Query: 75 DVS 77 D Sbjct: 66 DDE 68 >gi|319936190|ref|ZP_08010610.1| hypothetical protein HMPREF9488_01442 [Coprobacillus sp. 29_1] gi|319808764|gb|EFW05297.1| hypothetical protein HMPREF9488_01442 [Coprobacillus sp. 29_1] Length = 84 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+R++ R+ G+SQ ++ E L ++ V +YE +L S + + + Sbjct: 1 MSIGERLKTLRLEAGLSQRQVAETLKMSKPIVSQYESNQRTPSLGKLIRFSRFYNASLDY 60 >gi|304390894|ref|ZP_07372846.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325777|gb|EFL93023.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 112 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+R R G+SQ +L + +G T Q + E + + I + L + F Sbjct: 53 ERMRAARKEAGLSQAELAKDVGATRQTICSIEASNYNPSLNLCKLICKKLGKTLDELF 110 >gi|298387797|ref|ZP_06997347.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|298259402|gb|EFI02276.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 159 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 22/145 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G IR R+ M+QE L + + ++ V KYE + + L S L+ P Sbjct: 11 VHHGHNIRRFRIEKNMNQEVLSQLVHLSQSAVSKYE-QMRVIDDEMLHRFSRALDVP--- 66 Query: 73 FFDVSPTVCSDISS---EENNVMDFISTPDGLQL----NRYFIQIDDVKV--R------- 116 F+ ++ D + E N V D G ++ + + + D V R Sbjct: 67 -FEYLKSLEEDAQTVVFENNTVNDSEQYTGGAKISLGTVKSYTEDSDNSVDNRVNNFNPI 125 Query: 117 QKIIELVRSIVSS-EKKYRTIEEEC 140 +KI EL ++ ++KY +E Sbjct: 126 EKITELYERLLKEKDEKYAALERRL 150 >gi|297163316|gb|ADI13028.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 101 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + G ++ R GMSQ L LG++ ++ + E G + + L Sbjct: 22 HWGAFLKKARRSRGMSQRALARELGVSQARIAQIENGASTPQIDTMAAYITALG 75 >gi|292491070|ref|YP_003526509.1| hypothetical protein Nhal_0949 [Nitrosococcus halophilus Nc4] gi|291579665|gb|ADE14122.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 253 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPIS 71 +N+G+R++ R+ M+Q +L E G+ Q + K E G R S + +++ L Sbjct: 1 MNLGERLKKARLEANMTQRQLAETSGVKQQMISKLEVG--RASETSDIVSLAKALGVRSE 58 Query: 72 FFFDVSPT 79 + Sbjct: 59 WLDSGEEP 66 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 1/100 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ R G SQ +L + + Q +Q+ E G + L ++ V + Sbjct: 72 YIADTVKRLREEQGWSQSELARRVKVKPQNIQQLEDGTVK-QPRYLMELARVFGVTVEEL 130 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 P + + E + + + R I D Sbjct: 131 SSGGPRSKKEETPEYVLRLSRLIASASPEKIRAIESIIDA 170 >gi|289435861|ref|YP_003465733.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172105|emb|CBH28651.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 76 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 I+ +R G SQ+++ E L IT Q + K+EKG++R + Sbjct: 7 IQTKRTSCGHSQKEVAEHLHITQQSLSKWEKGISRPSIENTLRLLHFYRCS 57 >gi|258509881|ref|YP_003172632.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149808|emb|CAR88781.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259651145|dbj|BAI43307.1| phage transcriptional regulator [Lactobacillus rhamnosus GG] Length = 203 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGIT---FQQVQKYEKGVNRVGASRLQHISE 64 PN +++G+RI+ R+ G + E+ +G+T V ++E+G++ A ++ I+ Sbjct: 7 PNSH-LSLGERIKSIRISKGETMEEFALSVGLTSSGKSAVSRWERGLSAPSADTMKKIAN 65 Query: 65 VLESPISFFFDVSPTVCS 82 + F P Sbjct: 66 HGGISVQFLVTGKPAFED 83 >gi|256374687|ref|YP_003098347.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918990|gb|ACU34501.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 86 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G+S+ L E + + Q + E+G + I EV P+ F Sbjct: 14 NRIGVLRAERGLSRADLAEAVEVNPQTIGALERGDHYPSLDLALRICEVFGLPVEAVFGR 73 Query: 77 SP 78 +P Sbjct: 74 AP 75 >gi|271969477|ref|YP_003343673.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512652|gb|ACZ90930.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 92 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + +G+++ RR LG+SQ +L E G+T QV + E G + L+ +++ L+ Sbjct: 25 LLLGQQVYNRRTELGLSQAELAERAGMTQPQVSRLETGGVTPTLALLRRLAKALD 79 >gi|229030553|ref|ZP_04186588.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1271] gi|228730720|gb|EEL81665.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1271] Length = 440 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S + +S+ LE + Sbjct: 18 MEIGERIRQVRMHKGLTQGELVSEI-CSVTYLSRIESGKIKPSSSFITKVSKKLEVKSDY 76 Query: 73 FFDVS 77 + + Sbjct: 77 LINGN 81 >gi|281420727|ref|ZP_06251726.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella copri DSM 18205] gi|281405019|gb|EFB35699.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella copri DSM 18205] Length = 104 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R +R G++Q++L LG+ V K E R+ L+ I ++ + F Sbjct: 17 ARLRTKREERGLTQKQLAGMLGLPQSYVSKIETCERRMDFIELRSICNLMGISVVDFMQE 76 Query: 77 SPTV 80 T Sbjct: 77 VETE 80 >gi|218889540|ref|YP_002438404.1| transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218769763|emb|CAW25523.1| transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 262 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +R LG++Q + E ++ + Y G N + A+ S +LE P+S F SP + Sbjct: 23 AKRRELGLTQSSIAEAFRMSQTAISMYMNGSNALNAAVAAKFSTILEVPVSSF---SPRL 79 Query: 81 CSDISS-----EENNVMDFISTPD 99 ++I V D T + Sbjct: 80 AAEIEGMAKAMHPKPVPDITDTLE 103 >gi|170758576|ref|YP_001785951.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405565|gb|ACA53976.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 130 Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+SQ++LG L ++ Q + K+E G +L + + + + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFKISLD 59 >gi|330830628|ref|YP_004393580.1| transcriptional protein [Aeromonas veronii B565] gi|328805764|gb|AEB50963.1| Transcriptional protein [Aeromonas veronii B565] Length = 88 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + VGK+IR R +G+S+ K + LG+ ++ YE G VG + L ++ Sbjct: 6 VTVGKKIRQIREAVGLSRPKFADLLGVPPTTLKNYELGYREVGGAFLVALA 56 >gi|319935739|ref|ZP_08010169.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1] gi|319809288|gb|EFW05729.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1] Length = 154 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 27/63 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++ R G SQ+++ + + +T Q + +E + + ++ + + Sbjct: 2 LGEKLMRLRKKHGYSQQEVADLISVTRQTISNWESDQGIPTLDKARMLANLYNVSLDDLT 61 Query: 75 DVS 77 + Sbjct: 62 END 64 >gi|320333052|ref|YP_004169763.1| helix-turn-helix domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754341|gb|ADV66098.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM 21211] Length = 188 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + + +RIR+ R SQ L E G+ + K E+G A L ++ + Sbjct: 6 DDTSALIARRIRVEREARQWSQADLAERAGVAKATISKVERGDMSPTAVTLVRLATAFD 64 >gi|298674897|ref|YP_003726647.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] gi|298287885|gb|ADI73851.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] Length = 68 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R ++QE L + +G+T Q + E+G +S E I F Sbjct: 3 NNLKVWRAKKDITQEYLAKEMGVTRQTINAIERGKYDPSIQLAFKLSRFFECSIEDLF 60 >gi|291540886|emb|CBL13997.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 118 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLH 61 Query: 68 SPIS 71 + Sbjct: 62 ISLD 65 >gi|255292005|dbj|BAH90488.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292866|dbj|BAH89966.1| transcriptional regulator [uncultured bacterium] gi|255292956|dbj|BAH90054.1| XRE family transcriptional regulator [uncultured bacterium] gi|255293226|dbj|BAH90316.1| XRE family transcriptional regulator [uncultured bacterium] Length = 96 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G +R R+ G+SQE L GI + K E+G + + + I+ L+ Sbjct: 26 GAAVRALRIERGISQESLAHLAGIERSHMGKVERGEHMPTLAVIFKIARALDCS 79 >gi|291301572|ref|YP_003512850.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570792|gb|ADD43757.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 207 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R R G+S + GI + + E G + +S L P+S Sbjct: 12 ANLRAIREAAGLSLSAVARESGIAKGTLSQLESGTGNPTIETVFSLSNTLGVPVS 66 >gi|254454323|ref|ZP_05067760.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198268729|gb|EDY92999.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 148 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R + ++Q++L + +GI ++ +E+ ++ A+RL +S +L + + Sbjct: 36 GDRLAAARDVAQLTQKELAQRVGIKVSTLRNWEEDLSEPRANRLSILSGILGVSLRWLLT 95 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 D + L+ R Q+ R ++E Sbjct: 96 AEGEGLLAPDENAPIASDLSAILTELRAVRA--QMKQSTERLALLE 139 >gi|209552009|ref|YP_002283925.1| protein of unknown function DUF955 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539602|gb|ACI59533.1| protein of unknown function DUF955 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 359 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +RL R + G +Q++ + LG+ + + E G+ + ++V + P FF Sbjct: 5 GDLLRLARQMRGYTQKRSADDLGVAQAVLSRLENGLIEPDDDLIVRAAKVFQLPRDFF 62 >gi|145298283|ref|YP_001141124.1| transcriptional protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851055|gb|ABO89376.1| transcriptional protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 88 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + VGK+IR R +G+S+ K + LG+ ++ YE G VG + L ++ Sbjct: 6 VTVGKKIRQIREAVGLSRPKFADLLGVPPTTLKNYELGYREVGGAFLVALA 56 >gi|117620095|ref|YP_855824.1| transcriptional protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561502|gb|ABK38450.1| transcriptional protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 88 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + VGK+IR R +G+S+ K + LG+ ++ YE G VG + L ++ Sbjct: 6 VTVGKKIRQIREAVGLSRPKFADLLGVPPTTLKNYELGYREVGGAFLVALA 56 >gi|167647481|ref|YP_001685144.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167349911|gb|ABZ72646.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 71 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 19 IRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R G M+Q L + +G+T Q V E+G I++V + F Sbjct: 11 IRRLRFEHGEMTQADLAQRIGMTRQTVAAIEQGKYSPSLEAAFRIAQVFGVGLDAVF 67 >gi|160878225|ref|YP_001557193.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426891|gb|ABX40454.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 266 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEE 88 +QE+L +G+T Q + K+E+G++ L +S+VL + D+ ++ + ++ Sbjct: 20 TQEELALRVGVTPQAISKWERGISLPDIELLYQLSKVLSLSMDELLDLPTSLTESDNDKD 79 Query: 89 NN 90 Sbjct: 80 KE 81 >gi|71903983|ref|YP_280786.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71803078|gb|AAX72431.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] Length = 413 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 11/65 (16%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI-----------SEVLE 67 ++ R G+ Q++ +C+GI+ + +YE G ++ + Q + S L+ Sbjct: 6 LKKFRKKSGLKQKEFAKCIGISQAMLSQYESGKKKLSLEKFQEMKTHFGYLTDNDSSRLQ 65 Query: 68 SPISF 72 I + Sbjct: 66 VTIDY 70 >gi|152975886|ref|YP_001375403.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024638|gb|ABS22408.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 64 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R + +SQ++L ++ Q + E I+ L + F Sbjct: 3 NNIKSLRKVQKISQDELANLCNVSRQTINAIENNKYDPSLVLAFSIANYLNVKVDELF 60 >gi|148545072|ref|YP_001272442.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|227364226|ref|ZP_03848322.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683429|ref|ZP_08162945.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148532106|gb|ABQ84105.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|227070771|gb|EEI09098.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977779|gb|EGC14730.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 63 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R R +SQ +L + +G+ Q + E +++ L + ++ F Sbjct: 2 NNVRKYRKQQKLSQLELAKEIGVARQTINLIENDKYNPTLGLCLNLAHALHTDLNSLFWE 61 Query: 77 SP 78 P Sbjct: 62 EP 63 >gi|328947407|ref|YP_004364744.1| hypothetical protein Tresu_0498 [Treponema succinifaciens DSM 2489] gi|328447731|gb|AEB13447.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 195 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 9/92 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R ++ + + ++ V + E+ L I++ L+ + F F+ Sbjct: 13 GEKLRAVRERKHLTLKAVAAHAKVSESLVSQIERNKVSPAIDTLLDIADALDISLEFLFE 72 Query: 76 VSP---------TVCSDISSEENNVMDFISTP 98 +EE+ V + +S P Sbjct: 73 EYSRRRPVSVIHREDRRKINEEDVVYEELSDP 104 >gi|325689902|gb|EGD31906.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] gi|325696861|gb|EGD38749.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] gi|327459814|gb|EGF06154.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 94 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +GK+++ R G SQ ++ E LG T Q + +E + + L +++ + + Sbjct: 2 LGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSVSLIRLADFYQISLD 58 >gi|302341551|ref|YP_003806080.1| phage repressor [Desulfarculus baarsii DSM 2075] gi|301638164|gb|ADK83486.1| putative phage repressor [Desulfarculus baarsii DSM 2075] Length = 252 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 M N I N + +G R R R LG+SQ++ LG+T + E+G Sbjct: 1 MSNNSSIRNNR-VEIGGRFREIRKQLGLSQQEFASVLGVTQATASRIERGE 50 >gi|311744324|ref|ZP_07718128.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312497|gb|EFQ82410.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 167 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 11/117 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R +R +S +L E ++ + + E+G+ R A LQ I++ L + Sbjct: 37 LGEYLREQRRQAQLSLRQLSEAADVSNPYLSQIERGLRRPSAEVLQQIAKALRISAESLY 96 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 V + S V D I+ L + + ++++ RS V ++ Sbjct: 97 -VRAGILDADESGARMVEDAIALDPLLT----------ERQKSALVDIYRSFVGTDD 142 >gi|260175210|ref|ZP_05761622.1| hypothetical protein BacD2_25373 [Bacteroides sp. D2] gi|315923442|ref|ZP_07919682.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697317|gb|EFS34152.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 149 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ IR R+ M+QE L E + ++ V KYEK + + LQ + L P + Sbjct: 11 VHHGRNIRRTRIEKDMNQEGLSELVHLSQPAVSKYEK-MRVIDDEMLQRFARALNVPFDY 69 Query: 73 F 73 Sbjct: 70 L 70 >gi|256396427|ref|YP_003117991.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362653|gb|ACU76150.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 77 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +R R ++Q ++ LG+ V KYE G R+ L H+++ L + + Sbjct: 17 LRELRHEADLTQVQVAAALGVPQSFVSKYESGDRRLDLIELHHVAKALGTTV 68 >gi|226360021|ref|YP_002777799.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226238506|dbj|BAH48854.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 196 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 3/92 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + +RIR R+ G S + L ++ + + E G R+ +L I+ L + + Sbjct: 7 LDGVIRQRIRGLRVARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTL 66 Query: 71 SFF---FDVSPTVCSDISSEENNVMDFISTPD 99 D V + + + ++ + + Sbjct: 67 DQLVESVDDEDVVIRPMPEQTRGLTTWLLSRE 98 >gi|239815201|ref|YP_002944111.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801778|gb|ACS18845.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 2/93 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ +D + R+ R +S +L E G++ + K E+ + A L ++ L Sbjct: 11 PSGIDSLIAARLLALRQAKALSLAELAELSGVSKAMISKVERAESSPTAVLLGRLAAGLG 70 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 P++ + + P+ Sbjct: 71 VPLAQLLTEEKASPRRLRPRAE--QEVWRDPEA 101 >gi|207724614|ref|YP_002255011.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] gi|206589836|emb|CAQ36797.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] Length = 201 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 79 Query: 75 DVSPTVCSDIS 85 Sbjct: 80 AGGDGERPGTG 90 >gi|297201083|ref|ZP_06918480.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|197712131|gb|EDY56165.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 448 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 18/108 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ G++Q++L E T + E G R L+H+++ L Sbjct: 10 IGRRVQQLRVERGLTQKQLAEP-AYTPAYISTLESGRVRPSDDALRHLADRLGVGFEELA 68 Query: 75 DVSPT-----------------VCSDISSEENNVMDFISTPDGLQLNR 105 P + ++ DGL L Sbjct: 69 TGRPARLVTDLRLRLTEAQRTLATGEAEESATQYARLLTEADGLDLAE 116 >gi|187777701|ref|ZP_02994174.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] gi|187774629|gb|EDU38431.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] Length = 130 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLD 59 >gi|186474250|ref|YP_001861592.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184196582|gb|ACC74546.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 215 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Query: 4 NKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + +D VG R+R R G++ +L E GI + K E+G + + + Sbjct: 13 TTRASAQIDHQAVGARLRDARKARGLTLMQLSEQSGIAVSTISKAERGDIALTYDKFAAL 72 Query: 63 SEVLESPISFFFDVSPTVCS 82 + L+ F + S Sbjct: 73 AHALQLEFDAIFGRAKRSGS 92 >gi|32470529|ref|NP_863201.1| hypothetical protein SE_p609 [Staphylococcus epidermidis ATCC 12228] gi|27316958|gb|AAO06211.1| hypothetical protein SE_p609 [Staphylococcus epidermidis ATCC 12228] Length = 203 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++QE L E +T + +Q+ E G V + L+ +S L+ ++ F+ Sbjct: 6 SKVAEIRKQKSLTQENLAEKAYVTVRTIQRMEAGE-EVSSETLKSVSNALDVTVNELFES 64 Query: 77 SPTVCSD 83 + + Sbjct: 65 ISSSDKE 71 >gi|306835383|ref|ZP_07468404.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] gi|304568749|gb|EFM44293.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] Length = 120 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN------RVGASRLQHISEVLESPI 70 +++R R G+SQ+ L + G++ Q+ E+ N S + ++ LE P Sbjct: 17 QQLRRVRERRGVSQQVLADISGVSRSQISNLERNENGLHTMADPQLSTVYKLALALEIPP 76 Query: 71 SFFFDVSPTVCSDISSEEN 89 + V ++ Sbjct: 77 AVLLPAGGDVVEGHLADSA 95 >gi|300940028|ref|ZP_07154650.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300455126|gb|EFK18619.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 118 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 11/116 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++G+R+ R G++Q + LGI+ + + E G G L + + + Sbjct: 1 MSKDIGERVISVRKKAGLNQREFAARLGISNGGISQIENGKAMPGGEFLLKMHQEFNVDV 60 Query: 71 SFFF-----DVSPTVCSDISSEENNVMDFI--STPDG----LQLNRYFIQIDDVKV 115 ++ D + IS E+ ++D TPD L++ R++ Q K+ Sbjct: 61 NWLLTGMSTDGMTRNQNQISPEKQKLIDTFDDMTPDQQRSFLEIGRFYTQPKPGKI 116 >gi|227820316|ref|YP_002824287.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339315|gb|ACP23534.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 472 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+++R R +Q + E +GI+ + + E V A+ L ++E + I+ Sbjct: 6 LYIGRKVRELREANRATQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 64 >gi|212709441|ref|ZP_03317569.1| hypothetical protein PROVALCAL_00481 [Providencia alcalifaciens DSM 30120] gi|212687956|gb|EEB47484.1| hypothetical protein PROVALCAL_00481 [Providencia alcalifaciens DSM 30120] Length = 84 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R R G+++ +L L I+ QQV +YE G + R+ V F Sbjct: 16 LRRIRKQNGITEGELAVLLKISQQQVSRYENGKTMLTIGRINQYLNVFGLNWECF 70 >gi|191638075|ref|YP_001987241.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|190712377|emb|CAQ66383.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|327385303|gb|AEA56777.1| hypothetical protein LCBD_1280 [Lactobacillus casei BD-II] Length = 66 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFFDV 76 IR RM M+QE+ + +GI++ K E G ++ +++ + + FF+ Sbjct: 4 IRKARMKKKMTQEEAAKSIGISYSMYAKIENGNRGASQKTMKRMADFFGESVDALFFED 62 >gi|168183639|ref|ZP_02618303.1| DNA-binding protein [Clostridium botulinum Bf] gi|237797020|ref|YP_002864572.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182673224|gb|EDT85185.1| DNA-binding protein [Clostridium botulinum Bf] gi|229263790|gb|ACQ54823.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 220 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I+ R+ G++Q++L + LG+ + + E G + S + IS+VL I+ Sbjct: 4 VSDKIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGKGIN--- 60 Query: 75 DVSPTVCSDISSEEN 89 D+ + ++SSE Sbjct: 61 DIGISFEEEVSSEPK 75 >gi|152982219|ref|YP_001352353.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282296|gb|ABR90706.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 198 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R++ G++ +L + + + K E+G + L ++ L+S IS Sbjct: 23 LGVRLRHTRLVAGLTLIQLAKKAECSESLISKIERGSATPSLAMLHRLAVALDSNISSLM 82 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + P V + E V+ G+ L R Sbjct: 83 SEEMPVVGPVLRVGERPVI----KTGGISLER 110 >gi|254303995|ref|ZP_04971353.1| hypothetical protein FNP_1663 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324187|gb|EDK89437.1| hypothetical protein FNP_1663 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 182 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G I+ R+ G++Q++L L + ++KYE GV + S L +L + Sbjct: 3 DYFLGLLIKKFRISKGLTQKELANELDKSEISIKKYETGVLKTPFSVLFMTVHMLGIDVF 62 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 F++ + +I E D Sbjct: 63 TFYNYLRDLVEEIKRENRITQD 84 >gi|119488693|ref|ZP_01621702.1| hypothetical protein L8106_23046 [Lyngbya sp. PCC 8106] gi|119455116|gb|EAW36257.1| hypothetical protein L8106_23046 [Lyngbya sp. PCC 8106] Length = 160 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 I+ R L M+Q++L GI Q + K E+G R+ + ++ L P + Sbjct: 20 IKRLRTRLSMTQQQLAAAAGIHGQSLGKLERGKTLRLNQKTKKGLAIALNIPEEYL 75 >gi|71904455|ref|YP_281258.1| phage transcriptional repressor [Streptococcus pyogenes phage 6180.3] gi|94991387|ref|YP_599487.1| phage transcriptional repressor [Streptococcus phage 10270.4] gi|71803550|gb|AAX72903.1| phage transcriptional repressor [Streptococcus pyogenes phage 6180.3] gi|94544895|gb|ABF34943.1| phage transcriptional repressor [Streptococcus phage 10270.4] Length = 66 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +I+ R+ LG + E+ G+ G + V +EKG N + L I+++ +S Sbjct: 1 MTVGDKIKTIRLNLGETMEEFGKRFGTSKGTVNNWEKGRNLPNRNSLLRIAQLANQTVSD 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|330881145|gb|EGH15294.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 125 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R+ G++ E + G + K E+ L +SE L + S Sbjct: 7 MNIGAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSE 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + V+ SD SS + + + + R+F + + R+ IE ++ + S+ Sbjct: 67 LYAVA-ESGSDNSSGAASEPSPEQGNEVILVRRHFQALT-PRNRKLAIEFLKLLGQSQDD 124 >gi|323704452|ref|ZP_08116031.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536518|gb|EGB26290.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 132 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + +I R+ ++Q++L E L I V K E G +L IS+ L Sbjct: 32 DDILYEISMKIYEFRIKNDLTQKQLAEKLEIKQSMVSKLESGQYNPTIEQLWKISKKLGW 91 Query: 69 PISFFF--DVSPTVCSDISSEENNVMD 93 F + S D E N+ D Sbjct: 92 NFKIIFGEENSKAKIWDTVDFEENLND 118 >gi|323494354|ref|ZP_08099466.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] gi|323311517|gb|EGA64669.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] Length = 182 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G R + R G+SQ +L + G+T + + E + L + + + + Sbjct: 1 MDTEIGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + + + + Sbjct: 61 AEFFAIDDPQPEQFYTRKEEQPEI 84 >gi|303326711|ref|ZP_07357153.1| BamHI control element [Desulfovibrio sp. 3_1_syn3] gi|302862699|gb|EFL85631.1| BamHI control element [Desulfovibrio sp. 3_1_syn3] Length = 83 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + G + +R L +SQEKL E G+ + E+G + + Sbjct: 1 MPEYCKADAEILKQFGAALGAKREALHISQEKLAERAGLHRTYIGGVEQGRRNLSLLNIV 60 Query: 61 HISEVLESPISFFF 74 I+ L FF Sbjct: 61 KIATALGVNPEEFF 74 >gi|182434926|ref|YP_001822645.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775443|ref|ZP_08234708.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178463442|dbj|BAG17962.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655776|gb|EGE40622.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 273 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D VG +R R +SQ +L + + + E G +R + ++E L P+ Sbjct: 7 DTGVGPLLRDWREQRRISQLELALRADSSARHISFIETGRSRPSEDMVLRLAEELNVPV 65 >gi|163760476|ref|ZP_02167558.1| hypothetical protein HPDFL43_04196 [Hoeflea phototrophica DFL-43] gi|162282427|gb|EDQ32716.1| hypothetical protein HPDFL43_04196 [Hoeflea phototrophica DFL-43] Length = 116 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR R GM+ +L GI+ + E G L+ I+ L + Sbjct: 58 SRIRTYRKYRGMTGSELAAAAGISQPHLSDIENGKKAGSVDVLKRIATALRVDLDDL 114 >gi|49082322|gb|AAT50561.1| PA4077 [synthetic construct] Length = 69 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 22/67 (32%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G SQ +L L ++ Q V E G ++ V I FD Sbjct: 3 NRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIFDD 62 Query: 77 SPTVCSD 83 Sbjct: 63 REGQLDG 69 >gi|85712371|ref|ZP_01043421.1| Transcriptional Regulator, XRE family protein [Idiomarina baltica OS145] gi|85693814|gb|EAQ31762.1| Transcriptional Regulator, XRE family protein [Idiomarina baltica OS145] Length = 75 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + GK ++LRR+ + +SQE + G+ + K E+G + ++ I++ L Sbjct: 2 DIKAAFGKAVKLRRVEIDLSQEDMANSAGMARSFISKVERGDANPSVTSVKKIADTLGVL 61 Query: 70 ISFF 73 S Sbjct: 62 PSDL 65 >gi|300917191|ref|ZP_07133875.1| helix-turn-helix protein [Escherichia coli MS 115-1] gi|300415568|gb|EFJ98878.1| helix-turn-helix protein [Escherichia coli MS 115-1] Length = 178 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G S +L E ++ + + E+ + + L I+ L P S F Sbjct: 12 LKQLRQQRGWSLSRLAEATRVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISPPQ 71 Query: 79 TVCSDISSEENNVM 92 + + + M Sbjct: 72 SATPSVYDPQQQAM 85 >gi|301054815|ref|YP_003793026.1| putative DNA-binding protein [Bacillus anthracis CI] gi|300376984|gb|ADK05888.1| putative DNA-binding protein; possible transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 374 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R ++QE+L +GIT V K+E G + + L ++ I P Sbjct: 10 IADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITLLPLLASYFNISIDELISYKP 69 Query: 79 TVCSD 83 + + Sbjct: 70 QMEQE 74 >gi|301052439|ref|YP_003790650.1| phage-related transcritpional regulator [Bacillus anthracis CI] gi|300374608|gb|ADK03512.1| transcriptional regulator, phage-related protein [Bacillus cereus biovar anthracis str. CI] Length = 117 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R+ +SQE+ G+ + +T V K+E G G L+ +S+ I + Sbjct: 1 MEIKDRLKQIRIHNKLSQEQFGKEVDLTKGTVSKFENGKAFPGRETLEKVSKRFNVTIDY 60 Query: 73 FFDVSPTV 80 + S + Sbjct: 61 LYGESEEI 68 >gi|258515644|ref|YP_003191866.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779349|gb|ACV63243.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 132 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF---- 72 +R++ R G +QE L + L I + YE+ + + I+E L+ + + Sbjct: 8 QRLKKERESKGWTQEYLADLLKIKIGTLSGYERSYRQPDLDMVIKIAEHLDCSVDYLLGR 67 Query: 73 ------FFDVSPTVCSDISS 86 F++ +++ Sbjct: 68 TNQRSHFYEDREPTKAELEE 87 >gi|326204395|ref|ZP_08194253.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985427|gb|EGD46265.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 134 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG ++ R ++Q+++ + L I Q YE+ + + L +++ + Sbjct: 2 VGDILKTIREEKKITQDQIAQLLNIKRQTYSSYERNKSLPDINILSKLADYFNVSTDYLL 61 Query: 75 DVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQID---DVKVRQKIIELVRS 125 S + D + ++ +S + QL + ++ ++R +I ++R+ Sbjct: 62 GRSDIMNYDEYKDLLISTTKIEGLSDDEK-QLLNSYRKLSFEFKAEIRGEIKGILRT 117 >gi|227536365|ref|ZP_03966414.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227243741|gb|EEI93756.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 66 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I++ R+I G SQE+L + ++ Q + E G IS+ L+ + F++ Sbjct: 3 NNIKINRVIKGYSQEQLAILVNVSRQTINALEAGKYVPSTMLSLKISQALDKSVEELFEL 62 Query: 77 SPT 79 Sbjct: 63 EEG 65 >gi|227534544|ref|ZP_03964593.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187793|gb|EEI67860.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 304 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I R GMSQ +L E + ++ Q+ K+E+ + ++ + + E L + F Sbjct: 11 IGELINHFRENKGMSQAELSEGI-LSKAQLSKFERDLTKISVDKFLALLERLHVTFTEF 68 >gi|225378210|ref|ZP_03755431.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans DSM 16841] gi|225209941|gb|EEG92295.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans DSM 16841] Length = 201 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I R G +Q++L E L I+ + + K+E+G S L + LE ++ Sbjct: 4 IKIGKFIADERKRKGYTQKQLSEKLAISDKTISKWERGNGFPEVSLLLPLCNELEITVNE 63 Query: 73 FFDVSPTVCSD-ISSEENNVMDFIS 96 + + E N+++ + Sbjct: 64 LLSGERVSEEEYLKKAEENMVNLVR 88 >gi|207743984|ref|YP_002260376.1| helix-turn-helix motif protein [Ralstonia solanacearum IPO1609] gi|206595386|emb|CAQ62313.1| putative helix-turn-helix motif protein [Ralstonia solanacearum IPO1609] Length = 122 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 21/133 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R L ++Q + T Q YE AS L I+ +L +++ Sbjct: 1 MTIGERLKEERERLRLTQPAIASAADTTKQTQHAYETDRTPPKASYLAAIA-ILGVDVAY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-------VRS 125 + + TP + L + +V++ + L S Sbjct: 60 VITGERALNTA------------RTPMEVALLENYRH-SPAEVQRGVSMLLAQTSGAADS 106 Query: 126 IVSSEKKYRTIEE 138 + KK R+ EE Sbjct: 107 VAGKGKKNRSSEE 119 >gi|297203878|ref|ZP_06921275.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|197713065|gb|EDY57099.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 194 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 1/114 (0%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD +G R+ R G S +L E G++ + + E+ AS L + V Sbjct: 8 PDPVDTRLGVRLAELRAERGWSLGELAERSGVSKSTLSRAERAEISPTASLLNRLCGVYG 67 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +S ++ + + + R + +R +++E Sbjct: 68 RTMSQLL-SEIEAEAEPAPLVRSAGQPVWEDRAAGFVRRSVSPPHPGLRGELVE 120 >gi|42525956|ref|NP_971054.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41816006|gb|AAS10935.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 91 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 20/58 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G+SQ +L I+ + E G L I L + F Sbjct: 12 NRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALNINPAVLF 69 >gi|157836326|pdb|2R63|A Chain A, Structural Role Of A Buried Salt Bridge In The 434 Repressor Dna-Binding Domain, Nmr, 20 Structures Length = 63 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R++ + + LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 2 ISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWLL 60 Query: 75 DV 76 + Sbjct: 61 NG 62 >gi|107021872|ref|YP_620199.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116688820|ref|YP_834443.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105892061|gb|ABF75226.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116646909|gb|ABK07550.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 116 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ LG++Q +L G+ +YEKG+ R + L I+ + + Sbjct: 17 RLKRERLRLGLNQTELAVLGGVQKHAQFQYEKGMRRPNSDYLSAIALA-GVDVWYVLTGE 75 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + E+ V F + D + R+ I+ L+ +I Sbjct: 76 EGARLESPDEQRIVSGF--------------RALDARKREVILALIEAI 110 >gi|327401449|ref|YP_004342288.1| XRE family transcriptional regulator [Archaeoglobus veneficus SNP6] gi|327316957|gb|AEA47573.1| transcriptional regulator, XRE family [Archaeoglobus veneficus SNP6] Length = 314 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE------SPI 70 +RIR R LG+S +L + LG++ + ++KYE+GV+ + E L I Sbjct: 129 ERIREARQRLGISIGELAKMLGVSRRAIKKYEEGVDT-SVENAVKLEEFLGEYVIKAIDI 187 Query: 71 SFFF--DVSPTVCSDISSEENNVMDFIS 96 F DV P ++ + E +++ + Sbjct: 188 LNFVKDDVEPKEDVELRNGEAEIVEQLR 215 >gi|307570844|emb|CAR84023.1| DNA-binding protein [Listeria monocytogenes L99] Length = 71 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +IR R+ G++Q + +G + EKG R+ +SEVL ++FF++ Sbjct: 12 AKIRELRLQRGITQAFIARRMGYKYTSGYSNIEKGTVRLSHKNAVILSEVLMCDLNFFYE 71 >gi|307327283|ref|ZP_07606470.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306886962|gb|EFN17961.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 390 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 12/113 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P D +GKR+ +R I ++Q++L + G+ ++K E+ G + ++ ++ L Sbjct: 2 PTD--LGKRVAYQRRIARLTQQELADAAGVHVGTLRKIERAARGAGDNVVEALAAALGVD 59 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S + + + ++ I + D +++ EL Sbjct: 60 PSVLLGSRDRTDARVHAAMPSLSAVI----------AAYDVPDDGPVRQLSEL 102 >gi|307330189|ref|ZP_07609338.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884209|gb|EFN15246.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 190 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 2/84 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ +++ L I+ D Sbjct: 13 RNLKRCRNERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 72 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 E V + + + Sbjct: 73 EHGPRVTFVPPEQAVR--MWSTEA 94 >gi|296282095|ref|ZP_06860093.1| transcriptional regulator, Cro/CI family protein [Citromicrobium bathyomarinum JL354] Length = 63 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R SQ+ L E LG++ Q V E G I+EV I F Sbjct: 3 NRLKVLRAERNWSQQALAEELGVSRQSVNAIETGRYDPSLPLAFQIAEVFGLAIEEIF 60 >gi|294790649|ref|ZP_06755807.1| BamHI control element [Scardovia inopinata F0304] gi|294458546|gb|EFG26899.1| BamHI control element [Scardovia inopinata F0304] Length = 83 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 +G+ IR R +SQE L + V + E+G V ++ + L +P+ F Sbjct: 12 LGQAIRYYREEKKLSQEDLALAADMDRSYVGRVERGEKSVSLDKIWQLCIALGITPVELF 71 >gi|291518454|emb|CBK73675.1| Predicted transcriptional regulators [Butyrivibrio fibrisolvens 16/4] Length = 196 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 35/77 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R + +Q++L E + ++ Q + +E + + +S + E + Sbjct: 1 MELGKRIKDLRSLHNWNQDELAEKMFVSRQTISNWENEKSYPDIQSILLLSNLFEISLDQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 +I ++++ Sbjct: 61 LVKGDVEQMQEIINDQD 77 >gi|255527482|ref|ZP_05394352.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296187568|ref|ZP_06855963.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|308390326|ref|YP_003933779.1| XRE family transcriptional regulator [Clostridium carboxidivorans P7] gi|255508825|gb|EET85195.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296048090|gb|EFG87529.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|308066833|gb|ADO12137.1| XRE family transcriptional regulator [Clostridium carboxidivorans P7] Length = 236 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 7/102 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 GKR++ R ++Q L L ++ Q + +E G L I++ Sbjct: 5 GKRLKELREEFDLTQSDLASNLSTKEHVVSTQNISYWENGR-EPSYDILVKIADRFNVTT 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + P + E N + + D + + I++ Sbjct: 64 DYLTGRCPFRDYSVQMELKN-TEIFGSMDAHEKKNAYALIEN 104 >gi|238063802|ref|ZP_04608511.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885613|gb|EEP74441.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 214 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 3/83 (3%) Query: 5 KKIPNPVDI---NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +++ + +D +VG R+R R + +L GI+ + + E G R +L Sbjct: 20 RRMTDDLDRALADVGPRLRALRRQRETTLAELSAATGISVSTLSRLESGTRRPTLEQLLP 79 Query: 62 ISEVLESPISFFFDVSPTVCSDI 84 ++ + PT I Sbjct: 80 LARAHGVTLDDLVGAPPTGDPRI 102 >gi|227502795|ref|ZP_03932844.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] gi|227076525|gb|EEI14488.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] Length = 153 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN------RVGASRLQHISEVLESPI 70 +++R R G+SQ+ L + G++ Q+ E+ N S + ++ LE P Sbjct: 50 QQLRRVRERRGVSQQVLADISGVSRSQISNLERNENGLHTMADPQLSTVYKLALALEIPP 109 Query: 71 SFFFDVSPTVCSDISSEEN 89 + V ++ Sbjct: 110 AVLLPAGGDVVEGHLADSA 128 >gi|197123735|ref|YP_002135686.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173584|gb|ACG74557.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 217 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R +G +QE L + +Q+ E G A L ++ L + Sbjct: 1 MNAIIGTNVKTLREAMGWTQEDLAAKSKKPVRTIQRVESGEVLPTADTLITLAVALGVEV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V F D ++L Sbjct: 61 EDLRRTPDEWAHILEQAAGHVKKFHEEYDIIELA 94 >gi|146281047|ref|YP_001171200.1| Cro/CI family transcriptional regulator [Pseudomonas stutzeri A1501] gi|145569252|gb|ABP78358.1| transcriptional regulator, Cro/CI family [Pseudomonas stutzeri A1501] Length = 75 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G +IR +R G SQ+ L + + + E+G + +L I+ LE Sbjct: 8 LGGKIREQRKARGFSQDALALACKVDRSYMGRIERGEVNITVEKLYRIAWTLECDP 63 >gi|254974928|ref|ZP_05271400.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092317|ref|ZP_05321795.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255100398|ref|ZP_05329375.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255314055|ref|ZP_05355638.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255516735|ref|ZP_05384411.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255649834|ref|ZP_05396736.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|306519934|ref|ZP_07406281.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] Length = 132 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 19/130 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R ++Q KL + L F+ + KYE G + L I++ + Sbjct: 4 LGKRIAYLRNSKKLTQRKLMDIL--KFENLGKYETGDRKPNCDILMSIADYFNVTTDWLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V + S +E + ++ + + ++ I+ L R + +K Sbjct: 62 YGKEKVNVNSSVKE--------DKED------YLHVTNDEM--MILNLYRQLNERDKIKI 105 Query: 135 T-IEEECMVE 143 I E + E Sbjct: 106 EGILELKISE 115 >gi|52142641|ref|YP_084188.1| transcriptional regulator [Bacillus cereus E33L] gi|51976110|gb|AAU17660.1| possible transcriptional regulator/TPR domain protein [Bacillus cereus E33L] Length = 423 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G +S +Q +S+ LE + Sbjct: 1 MEIGERIRHVRMQKGLTQGELVSGI-CSITYLSRIESGKITPSSSFIQKVSKKLEVKSDY 59 Query: 73 FFDVS 77 + + Sbjct: 60 LINGN 64 >gi|73748389|ref|YP_307628.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|147669169|ref|YP_001213987.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432437|ref|YP_003462310.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660105|emb|CAI82712.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|146270117|gb|ABQ17109.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288946157|gb|ADC73854.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 67 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q +L E +G++ Q + EKG +++ L + I F Sbjct: 6 RIKELRARYNLTQSELAETVGVSRQTMLYLEKGKYNPSLILAHKVAKALHADIEDVF 62 >gi|327438061|dbj|BAK14426.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 67 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + + Q + + +GI+ + + E+G + +LQ I++VL+ I Sbjct: 7 GRRIRAFRKLKRIQQTEFAKHIGISVTILGRIERGEKKPSEEQLQTIADVLQIDI 61 >gi|313899914|ref|ZP_07833417.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312955529|gb|EFR37194.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 69 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R L M+QE+L + ++ Q + EKG I+ + + I F Sbjct: 3 NRIRKLRQELQMTQEELAQRCRVSRQTIISLEKGKYDPSIHLAHRIATIFQHHIEDVF 60 >gi|309798707|ref|ZP_07692972.1| putative transcriptional regulator [Streptococcus infantis SK1302] gi|308117650|gb|EFO55061.1| putative transcriptional regulator [Streptococcus infantis SK1302] Length = 49 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 26/43 (60%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 ++++ RR L ++Q+++ + LGI+FQ +E+GV R Sbjct: 5 EKLKARRKELKLTQKEIAKQLGISFQAYSAWERGVKEPSEERF 47 >gi|296454298|ref|YP_003661441.1| Cro/CI family transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183729|gb|ADH00611.1| Transcriptional regulator, Cro/CI family [Bifidobacterium longum subsp. longum JDM301] Length = 65 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R+ LG+SQ L ++ Q V E S ++ L + + F Sbjct: 6 NRIKELRVNLGLSQGTLARRCDVSRQTVNAIENNKYDPTLSLAFRLARELGATVDGLF 63 >gi|291618593|ref|YP_003521335.1| Hypothetical Protein PANA_3040 [Pantoea ananatis LMG 20103] gi|291153623|gb|ADD78207.1| Hypothetical Protein PANA_3040 [Pantoea ananatis LMG 20103] Length = 229 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 11/97 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R+ SQE+L E G++ + VQ+ E G + L ++ V I+ Sbjct: 76 NKVREYRLARAWSQEQLAEMAGLSTRTVQRIENG-DPPSLETLSALAAVFACKIT----- 129 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN---RYFIQI 110 + S+ S+E +D + LQL R++ + Sbjct: 130 --DLTSEASAENGEALDSYISDARLQLAAESRFYRSL 164 >gi|295675501|ref|YP_003604025.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] gi|295435344|gb|ADG14514.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 157 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +R R+ LGMSQE+LG +G + + E+ R + ++ L+ + Sbjct: 16 RNLRAYRIELGMSQEELGSYIGADRTAISRLERTFGNPTLERAEALASALDIDVRVLMTF 75 Query: 77 SPTVCSDISSEENNV 91 S + +V Sbjct: 76 SGKGEIERRPPTGDV 90 Score = 38.6 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR---VGASRLQHISEVLESPI 70 VG ++ R +G++Q++LGE G+ + + E R + + L+ ++E Sbjct: 95 VGAKVATLREKMGLTQKQLGELAGVDRNFISRVEAPHGRGTPLELATLEKLAEAFGIHP 153 >gi|315498490|ref|YP_004087294.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315416502|gb|ADU13143.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 391 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLES 68 R+ G+SQ L LG+ QQVQ+YE + I+ +L Sbjct: 59 RIAKGLSQRDLAWRLGLKEQQVQRYESDRYTTISLKNYSKIAALLGV 105 >gi|239616493|ref|YP_002939815.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] gi|239505324|gb|ACR78811.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] Length = 79 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPI 70 +++ R+ GM+QE+L E I+ + K E G ++ L I+ +L P+ Sbjct: 3 KLKEIRIKRGMTQEELAEKAKISRATLSKIENGKVKLTDFFLADTIAAILGVPV 56 >gi|187729871|ref|YP_001853765.1| transcriptional regulator XRE family [Vibrio tapetis] gi|182894430|gb|ACB99595.1| RstR RS2 element transcriptional regulator [Vibrio tapetis] Length = 132 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 I+ R+ G +QE++ + + + Q K+E G A+++Q ++E L Sbjct: 7 IKSARVERGYTQEQIAKLVKVAKQTYLKWENGETEPKATQIQLLAENLG 55 >gi|170783094|ref|YP_001711428.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157664|emb|CAQ02865.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 153 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 D +VG+ +R R +SQ +L G+ + YE G + L + L +P Sbjct: 3 DASVGEELRRLRREAALSQRELAAVTGVPQPNIAAYESGRRQPSPETLVRLGAALRAP 60 >gi|153004060|ref|YP_001378385.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027633|gb|ABS25401.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5] Length = 68 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R R +SQ+ L + +GI+ V E+G ++ +++ L P + Sbjct: 10 NVRRLRAKKKLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPA 63 >gi|227820046|ref|YP_002824017.1| ExsI protein [Sinorhizobium fredii NGR234] gi|36958588|gb|AAQ87056.1| ExsI protein [Sinorhizobium fredii NGR234] gi|227339045|gb|ACP23264.1| ExsI protein [Sinorhizobium fredii NGR234] Length = 83 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R +G S E L G+ ++ + E G++ ++L+ I+ L+ P+S F Sbjct: 24 RVRAAREAVGYSIEDLAVTCGLANAEINEIESGMDN-SPAKLKRIAIALQVPVSDF 78 >gi|325261427|ref|ZP_08128165.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032881|gb|EGB94158.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 67 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + IR R +Q+++ + L IT KYE G + + ++++ + + Sbjct: 4 ENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60 >gi|288904941|ref|YP_003430163.1| transcriptional regulator MutR family [Streptococcus gallolyticus UCN34] gi|325977897|ref|YP_004287613.1| MutR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731667|emb|CBI13227.1| putative transcriptional regulator MutR family [Streptococcus gallolyticus UCN34] gi|325177825|emb|CBZ47869.1| MutR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 290 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++GK + R+ G++ + E GI+ Q+ ++E+G + +RL + E + PI+ Sbjct: 4 KHLGKLFKKYRVSRGLTLRDIAEA-GISTSQLSRFEQGKTDLTITRLALVLEEMNVPIAE 62 Query: 73 FF 74 F Sbjct: 63 FM 64 >gi|222838495|gb|EEE76860.1| predicted protein [Populus trichocarpa] Length = 555 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 28/52 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ R G+SQ +L + LG++ +V E+ + +L I ++L++ + Sbjct: 15 LKSLRKAAGVSQAQLAQRLGVSQSRVAAIERDPAAISVRQLMEILQLLDADL 66 >gi|254284170|ref|ZP_04959138.1| transcriptional regulator, XRE family with cupin sensor domain [gamma proteobacterium NOR51-B] gi|219680373|gb|EED36722.1| transcriptional regulator, XRE family with cupin sensor domain [gamma proteobacterium NOR51-B] Length = 211 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 35/99 (35%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ +P + +G+R+ R G + ++L G++ + + E+G + Sbjct: 20 MSNSEPAIDPAALRLGQRVVEMRQNNGQTLDQLASASGVSRSMLSQIERGKANPTLAVTY 79 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 I++ I D ++ + + Sbjct: 80 RIAQSFGLSIGEMVDDPSLGSPIEVVHGSDPGNLFRDDE 118 >gi|167582937|ref|ZP_02375811.1| DNA-binding protein [Burkholderia thailandensis TXDOH] Length = 185 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 63 >gi|158321370|ref|YP_001513877.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141569|gb|ABW19881.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 78 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R++ R ++QE+LG +G++ Q + E IS+V E I F F Sbjct: 3 NRLKALRESFELTQEQLGALVGVSRQAINSIETEKFEPSIWLAYDISKVFECSIEDIFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESE 66 >gi|17229162|ref|NP_485710.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75907407|ref|YP_321703.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17135490|dbj|BAB78036.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75701132|gb|ABA20808.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 115 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 11/100 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHIS 63 K+ P P RI L R G++Q +L +G+T +Q +E G R+ Sbjct: 2 KQKPKP-------RIALLREKAGLTQLELSRLVGVTESTIQNWESGRTGTDHIERIIRFC 54 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMD---FISTPDG 100 + L + + ++ ++ D + T + Sbjct: 55 KALNCQVEDLIEYKDETTETSVNKPTSLSDIHHLLGTEEA 94 >gi|84498439|ref|ZP_00997209.1| putative DNA-binding protein [Janibacter sp. HTCC2649] gi|84381182|gb|EAP97066.1| putative DNA-binding protein [Janibacter sp. HTCC2649] Length = 122 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R +R+ +S +L + GI+ + + E+G+ R A LQ +++ LE + Sbjct: 12 LGDYLREQRLSHRLSLRQLSDLAGISNPYLSQLERGLKRPSAEILQQLAKGLEVSAETLY 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +E V + ST + D + R+ ++++ S + ++ K Sbjct: 72 ------VKAGLLDEQPVAETTSTT-VRDAIAADPNLTD-RQRETLLDVYESFIGADPK 121 >gi|329890293|ref|ZP_08268636.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845594|gb|EGF95158.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 188 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LG+SQ L G+ V E G L+ + + + FF Sbjct: 12 IGPRLRALRDRLGLSQRALARKAGVPSSTVSLVESGRTSPSVGSLKRLLDAAGISLGDFF 71 >gi|325298893|ref|YP_004258810.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318446|gb|ADY36337.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 112 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+ IR R+ ++QE+LGE +G+ Q+ + E+G + + + + + L Sbjct: 44 IGEAIRNARLKQNLTQEELGERIGVQKAQISRMERGYS-ISIPTMSRVFKALGI 96 >gi|320330709|gb|EFW86684.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 119 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R+ G++ E + G + K E+ L +SE L + S Sbjct: 1 MNIGAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + V+ SD SS + + + + R+F + + R+ IE ++ + S+ Sbjct: 61 LYAVA-ESGSDNSSGAASEPSPEQGNEVILVRRHFQALT-PRNRKLAIEFLKLLGQSQDD 118 >gi|317123049|ref|YP_004103052.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315593029|gb|ADU52325.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 193 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R +S ++ G+ F + KYE+ + L+ ++ + E P++ F Sbjct: 4 LGGRLRRIRESRNLSIYEVERRTGMHFTTISKYERNERQPSLDVLRELAALYEVPVTVF 62 >gi|302385536|ref|YP_003821358.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196164|gb|ADL03735.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 110 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 26/70 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKR+ RR ++QE L E +T Q + E G + + + LE + Sbjct: 6 KEIGKRMYDRRKQKNLTQEALAEKANVTPQTISTAELGHKAMRPETIISVCNALEISTDY 65 Query: 73 FFDVSPTVCS 82 T Sbjct: 66 LLRGDITPSD 75 >gi|294619907|ref|ZP_06699283.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|312952950|ref|ZP_07771806.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|291593844|gb|EFF25342.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|310629091|gb|EFQ12374.1| helix-turn-helix protein [Enterococcus faecalis TX0102] Length = 71 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G SQ +L + + +T Q V ++ G +++ +SE+L P++ F Sbjct: 5 SNLSRYRKEKGFSQIELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 62 >gi|283784131|ref|YP_003363996.1| transcriptional regulator of the polyamine metabolism genes [Citrobacter rodentium ICC168] gi|282947585|emb|CBG87140.1| transcriptional regulator of the polyamine metabolism genes [Citrobacter rodentium ICC168] Length = 185 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R G+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQKQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMDF 94 + + ++++++ Sbjct: 69 EPEKPDEPQVVINQDDLIEI 88 >gi|229829701|ref|ZP_04455770.1| hypothetical protein GCWU000342_01798 [Shuttleworthia satelles DSM 14600] gi|229791690|gb|EEP27804.1| hypothetical protein GCWU000342_01798 [Shuttleworthia satelles DSM 14600] Length = 114 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 16/116 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G RI+ R+ G SQE++G +G+ + +YE V + L +++VL S +++ Sbjct: 14 GGRIKAIRIQKGWSQEEMGFRIGVNKKSVISEYENDKRAVTLAMLPILADVLGSTMNYL- 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V + E+ +++ I P L K R+ IE +R + E Sbjct: 73 -----VTGHAAKEDPDIVLAIQLPKDL---------KTEKGRKAAIEHIRIVALME 114 >gi|228928376|ref|ZP_04091417.1| hypothetical protein bthur0010_30750 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946950|ref|ZP_04109247.1| hypothetical protein bthur0007_30810 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812682|gb|EEM59006.1| hypothetical protein bthur0007_30810 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831423|gb|EEM77019.1| hypothetical protein bthur0010_30750 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 374 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R ++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|261367082|ref|ZP_05979965.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571203|gb|EFB76738.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 162 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ----QVQKYEKGVNRVGASRLQHISEVLES 68 + +G+RI R++ GM+Q+ LG +G + ++ +YE G A +++VL+ Sbjct: 1 MAIGERIHFFRLLRGMTQKYLGMAVGFPEKSADVRLAQYETGSRTPKADLTAALAQVLDV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseburia intestinalis L1-82] gi|257201706|gb|EEU99990.1| transcriptional regulator [Roseburia intestinalis L1-82] Length = 170 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 I+L R GMSQE+L E + Q V K+E G + ++E Sbjct: 31 NIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESIPDVIACDRMAEAFGV 81 >gi|209808835|ref|YP_002274406.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880758|ref|ZP_05660411.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257883426|ref|ZP_05663079.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257895016|ref|ZP_05674669.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562582|ref|ZP_05833090.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528672|dbj|BAG74973.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814986|gb|EEV43744.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257819084|gb|EEV46412.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257831395|gb|EEV58002.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073092|gb|EEW61439.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 180 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISE 64 PNPV+ GKRI+ R GM+ E+ + +G Q+ + +E+G + RL I+E Sbjct: 47 KPNPVET--GKRIKSIRSNFGMTMEQFADLIG-NAQKGNINNWERGFSLPNKERLIKIAE 103 Query: 65 VLESPISF 72 + I + Sbjct: 104 LSNKTIDW 111 >gi|254248400|ref|ZP_04941720.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124874901|gb|EAY64891.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 162 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G++Q +L LGIT Q + E + V RL + L ++ + Sbjct: 46 RKSAGLTQAQLAARLGITQQSYAQLEANPSAVSIERLFKVMNALGVRMT--LSLDERDAP 103 Query: 83 DISSEENNVMDFISTP 98 +++ +V + ++ Sbjct: 104 AEAADSASVAEPVARR 119 >gi|116334802|ref|YP_796329.1| transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100149|gb|ABJ65298.1| Predicted transcriptional regulator [Lactobacillus brevis ATCC 367] Length = 67 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I RR +SQ +L + +T Q + E S ++ +LE+ + F Sbjct: 5 IATRRKQRKLSQAELAQLTAVTRQTINTIENNKYDPSLSLAFKLAAILETTVDALFSNGE 64 Query: 79 TV 80 V Sbjct: 65 DV 66 >gi|29375148|ref|NP_814301.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|256852520|ref|ZP_05557895.1| transcriptional regulator [Enterococcus faecalis T8] gi|256964687|ref|ZP_05568858.1| CylR2 [Enterococcus faecalis HIP11704] gi|257085876|ref|ZP_05580237.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|307272302|ref|ZP_07553561.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|21693300|gb|AAM75247.1|AF454824_42 EF0042 [Enterococcus faecalis] gi|29342607|gb|AAO80372.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256712067|gb|EEU27100.1| transcriptional regulator [Enterococcus faecalis T8] gi|256955183|gb|EEU71815.1| CylR2 [Enterococcus faecalis HIP11704] gi|256993906|gb|EEU81208.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|306511024|gb|EFM80035.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|315027717|gb|EFT39649.1| helix-turn-helix protein [Enterococcus faecalis TX2137] Length = 66 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++L R +SQ +L L ++ Q + EK I+ L++P+ F Sbjct: 4 NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLDTPLEDIFQW 63 Query: 77 SPT 79 P Sbjct: 64 QPE 66 >gi|302528966|ref|ZP_07281308.1| predicted protein [Streptomyces sp. AA4] gi|302437861|gb|EFL09677.1| predicted protein [Streptomyces sp. AA4] Length = 367 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI R G++Q L + +G ++QK E G L+ I EVL+ P + Sbjct: 94 LGSRILKWRTARGLTQVDLADGIGCKQPKIQKIESGKAGTRPDDLERIIEVLDIPPA 150 >gi|196037891|ref|ZP_03105201.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196031161|gb|EDX69758.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 374 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R ++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD 83 P + + Sbjct: 64 LISYKPQMEQE 74 >gi|167761292|ref|ZP_02433419.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] gi|167660958|gb|EDS05088.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] Length = 134 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 3/67 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I + +R R ++Q L L I+ Q YE L H++ Sbjct: 1 MPN---IQLANNLRYLRKQHNLTQTTLSNMLNISRQAYSNYETSKRTPDLDSLLHLAGFY 57 Query: 67 ESPISFF 73 ++ Sbjct: 58 HVSLNDL 64 >gi|158319817|ref|YP_001512324.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140016|gb|ABW18328.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 71 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ + R G+SQE+ + + ++ Q + E G IS PI F Sbjct: 3 NKVEILRKEKGLSQEEFAKIIRVSRQTISSIETGKYNPSLELAFIISNYFGKPIEEIF 60 >gi|89096186|ref|ZP_01169079.1| DNA-binding protein [Bacillus sp. NRRL B-14911] gi|89089040|gb|EAR68148.1| DNA-binding protein [Bacillus sp. NRRL B-14911] Length = 67 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R +Q+ L + +G++ Q + EKG + IS V P+ F Sbjct: 6 VREMRARFRYTQQDLADKIGVSRQTIGLIEKGDYAPSITLALKISSVFGVPVEQIF 61 >gi|333022876|ref|ZP_08450940.1| putative regulatory protein [Streptomyces sp. Tu6071] gi|332742728|gb|EGJ73169.1| putative regulatory protein [Streptomyces sp. Tu6071] Length = 184 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R GM+ L GI+ + + E G+ R L ++ + Sbjct: 2 GERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELVG 61 Query: 76 VSPTVCSDISSEE 88 P + +E Sbjct: 62 TRPVADPRVRAEP 74 >gi|331001960|ref|ZP_08325480.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411756|gb|EGG91161.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon 107 str. F0167] Length = 73 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R +SQ++L E +G++ Q + EKG I L+ + F Sbjct: 5 KLKSARAAKDLSQQQLAEIVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELF 61 >gi|331086520|ref|ZP_08335599.1| hypothetical protein HMPREF0987_01902 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410578|gb|EGG90006.1| hypothetical protein HMPREF0987_01902 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 136 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPIS 71 + G++++ R G++Q +L + +G++ + V+ +E Q ++++L IS Sbjct: 1 MTFGEKVKNLRKNKGLNQTQLADAVGVSLRTVRGWEIEGRYPKKHDLYQKLADILSCDIS 60 Query: 72 FFFDVSPTVCSDISSE 87 + ++ S + Sbjct: 61 YLMTEEEAFITEASEQ 76 >gi|325522491|gb|EGD01059.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 140 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 R G++Q +L LG+T Q + E + V RL + L Sbjct: 19 RKSAGLTQAQLAARLGVTQQSYAQLESNPSAVSIERLFKVLNALGV 64 >gi|325662274|ref|ZP_08150889.1| hypothetical protein HMPREF0490_01627 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471526|gb|EGC74747.1| hypothetical protein HMPREF0490_01627 [Lachnospiraceae bacterium 4_1_37FAA] Length = 106 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G+S + LG + + K E G S +I + L+ FFD Sbjct: 9 KRLTQLRNKQGISARDMSLSLGQSESYINKIENGKALPSMSAFFYICDFLKIHPRDFFDE 68 Query: 77 SP 78 S Sbjct: 69 SD 70 >gi|307330667|ref|ZP_07609806.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306883728|gb|EFN14775.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 141 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 7 IPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +P D + +G+RI R + G S +LG+ ++ + EKG + ++ Sbjct: 1 MPYGNDEHTGGIGQRIAELRAVRGYSLRQLGQRSHVSASMLSMIEKGDRNASEEIVAAVA 60 Query: 64 EVLESPIS 71 L+ +S Sbjct: 61 RALDVGVS 68 >gi|300697493|ref|YP_003748154.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074217|emb|CBJ53762.1| putative transcriptional regulator [Ralstonia solanacearum CFBP2957] Length = 201 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 79 Query: 75 DVSPTVCSDIS 85 Sbjct: 80 AGGDGERPGTG 90 >gi|240169634|ref|ZP_04748293.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 471 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L L ++ V + E + L ++E P +F Sbjct: 7 GARLRRLREEQGLTQMALARALDLSTSYVNQLENDQRPITVPVLLALTERFGLPTRYF-- 64 Query: 76 VSPTVCSDISSEENNVMD 93 +P + + S+ V+ Sbjct: 65 -APDTDARLVSDLREVLA 81 >gi|256394502|ref|YP_003116066.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360728|gb|ACU74225.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 65 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +R R G+SQ+ LGE LG++ Q V E+ I+ + + Sbjct: 5 MRALRQGKGLSQQDLGEALGVSRQTVNAIEQSRYDPSLPLAIRIARYFGTTV 56 >gi|194015234|ref|ZP_03053850.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012638|gb|EDW22204.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 156 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +GK IR+ R G S ++L E ++ + K E+GV++ L+ +S LE + Sbjct: 2 IGKVIRIYRKRKGYSIQQLAEDAHVSKSYLSKIERGVHKNPSVQFLKKVSSSLEIDLQEL 61 Query: 74 FDVSPTVCSDISSEENN 90 FD + D S E+ Sbjct: 62 FDAETLMFHDSESGEHE 78 >gi|171910469|ref|ZP_02925939.1| Transcriptional regulator, XRE family protein [Verrucomicrobium spinosum DSM 4136] Length = 198 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++G R++ R S E L G++ + + E+ + I++ + Sbjct: 17 ISRHLGARVKQLRSDRNWSLEALAGASGVSRSMLSEIEREQANPTLAVTLRIAQAFGMSL 76 Query: 71 SFFFDVSPTVCS 82 S + S Sbjct: 77 SELIETPGVSSS 88 >gi|254249607|ref|ZP_04942927.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124876108|gb|EAY66098.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 195 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 19 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSES 78 >gi|167648317|ref|YP_001685980.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350747|gb|ABZ73482.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 69 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G++Q L E +G+T + + E GV ++ L + + F + Sbjct: 10 LKAARTEAGLTQADLAELVGVTRKTINTVENGVFVPSTVLSLKLARALGTSVEALFQLPE 69 >gi|51596205|ref|YP_070396.1| prophage transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|186895226|ref|YP_001872338.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|51589487|emb|CAH21109.1| putative prophage transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|186698252|gb|ACC88881.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis PB1/+] Length = 122 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 12/98 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G SQE + G++ + KYE+G A+ L ++ + + Sbjct: 12 IGARLREEREKTGESQEAMATNFGVSTRTWGKYERGETVPDAATLALLNAQYGLDVMYIL 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 T IS+EE L+L + +DD Sbjct: 72 TGKRTPPDTISTEE------------LKLVENYRAMDD 97 >gi|194433805|ref|ZP_03066079.1| transcriptional regulator PuuR [Shigella dysenteriae 1012] gi|194417908|gb|EDX34003.1| transcriptional regulator PuuR [Shigella dysenteriae 1012] gi|332098182|gb|EGJ03155.1| helix-turn-helix family protein [Shigella dysenteriae 155-74] Length = 185 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R G+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMD 93 + + ++++++ Sbjct: 69 EPEKPDEPQVVINQDDLIE 87 >gi|328553992|gb|AEB24484.1| hypothetical protein BAMTA208_11595 [Bacillus amyloliquefaciens TA208] Length = 74 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G++QE L E L + +E G + ++E+L+ I F S Sbjct: 10 RKAKGLTQENLAEKLMYKKSTISNWENGYSTPKMEDAFKVAEILDCDIKELFFNQKGQES 69 Query: 83 DISSE 87 S+ Sbjct: 70 HTSTA 74 >gi|293401672|ref|ZP_06645814.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304930|gb|EFE46177.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 69 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KR+R R +SQ +L + L I+ + YE G V L +++ + I + D Sbjct: 6 KRLRDLREDHDLSQAELAKFLNISQRTYSYYETGERSVPVEILAKLAKFYNTTIEYLID 64 >gi|257139965|ref|ZP_05588227.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 185 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 63 >gi|225017725|ref|ZP_03706917.1| hypothetical protein CLOSTMETH_01654 [Clostridium methylpentosum DSM 5476] gi|224949518|gb|EEG30727.1| hypothetical protein CLOSTMETH_01654 [Clostridium methylpentosum DSM 5476] Length = 81 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R+ +Q ++ L I+ +YE G R + ++ ++ + + ++ Sbjct: 9 ERIRNLRIDHDYTQGEIAGLLQISQSTYAQYEVGKRRFPIKLIVKLALFYKTSVDYLLEL 68 Query: 77 SPT 79 + Sbjct: 69 TDD 71 >gi|189462167|ref|ZP_03010952.1| hypothetical protein BACCOP_02849 [Bacteroides coprocola DSM 17136] gi|189431140|gb|EDV00125.1| hypothetical protein BACCOP_02849 [Bacteroides coprocola DSM 17136] Length = 73 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 RI+ G+SQ +L LG TF V Y + S L I+ +L+ + Sbjct: 4 NRIKEALAARGISQTELANRLGKTFNMVNLYASNKVQPPISVLYQIANILDIDV 57 >gi|167588944|ref|ZP_02381332.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 183 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R+R R G+SQ +L + G+T + E+G L+ + E + ++ FF Sbjct: 5 VAERLRYVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + S + + + + L Sbjct: 65 TFELVESRTVVSRRDEMPNLGNDALAFHLVGA 96 >gi|73669664|ref|YP_305679.1| transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72396826|gb|AAZ71099.1| transcriptional regulator [Methanosarcina barkeri str. Fusaro] Length = 184 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + + + + E L ++ + KYE G + AS L I+ L ++ Sbjct: 6 KEIADRVRELRELSDFTVKDMAEYLQVSNETYGKYEDGTADIPASMLFEIAHKLRVDMAT 65 Query: 73 FFDVSPTVCS 82 + Sbjct: 66 LLTGEEPRMN 75 >gi|323486126|ref|ZP_08091457.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum WAL-14163] gi|323692982|ref|ZP_08107203.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323400693|gb|EGA93060.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum WAL-14163] gi|323502983|gb|EGB18824.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 69 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 R++ R G+SQ +L +G++ Q + E G A + L+ Sbjct: 9 NRLKTARAEQGISQGELAAMVGVSRQTISYIETGQFNPTAKLALLLCIALD 59 >gi|254496193|ref|ZP_05109088.1| phage repressor [Legionella drancourtii LLAP12] gi|254354585|gb|EET13225.1| phage repressor [Legionella drancourtii LLAP12] Length = 220 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGEC-LGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI R LG++ ++L + ++ ++ +E+ G + ++E L S+ Sbjct: 6 QIGNRITKARKELGITIKELAARTVTLSPARISNWEQCTRSPGPLEAKLLAEQLGVSASY 65 Query: 73 FFDVSPTVCSDISSEENNVMD---FISTPDGLQ 102 ++ D+ N ++T + L Sbjct: 66 LLCLTDNPQGDLIQNPENKFRHIPILNTKEALH 98 >gi|238750620|ref|ZP_04612120.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia rohdei ATCC 43380] gi|238711268|gb|EEQ03486.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia rohdei ATCC 43380] Length = 196 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R+ ++ ++L +G + + K E V + L ++ LE+ IS Sbjct: 15 LGMRLRHARLAQEITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 Query: 75 DVSPTVCSDISSEENNV 91 S S + E + Sbjct: 75 AESWVADSPVLKPEQRI 91 >gi|227522686|ref|ZP_03952735.1| possible transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227090134|gb|EEI25446.1| possible transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 159 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G K+ + ++ ++ +RI + SQ + + +GI K + G +V A L + Sbjct: 25 GGNKMASHLEQSLAERIAYLQDRSQFSQADIAKKMGIDRTAFSKIKNGTRKVSADELNKL 84 Query: 63 SEVLESPISFF 73 SE+ + Sbjct: 85 SEIFGVSTDYL 95 >gi|94497104|ref|ZP_01303677.1| hypothetical protein SKA58_18725 [Sphingomonas sp. SKA58] gi|94423476|gb|EAT08504.1| hypothetical protein SKA58_18725 [Sphingomonas sp. SKA58] Length = 270 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 9/87 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++QE L G + VQ+ E+G +V A + I+ FD++ Sbjct: 29 RIKALRAARALTQEDLAALAGRSVASVQRIERGE-KVSAYTIASIAAA--------FDIT 79 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 + +++ + + G L Sbjct: 80 AEALTAAPNDDRPYLPLATINGGRALV 106 >gi|254974648|ref|ZP_05271120.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092038|ref|ZP_05321516.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255313774|ref|ZP_05355357.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516456|ref|ZP_05384132.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649554|ref|ZP_05396456.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682721|ref|YP_003214006.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686319|ref|YP_003217452.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306519681|ref|ZP_07406028.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260208884|emb|CBA61852.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212335|emb|CBE03128.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 183 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PN VG+ +RL R +G+S +K + G++ + + E+G + S L IS Sbjct: 2 DNKFPN-----VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKIS 56 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM 92 + + + + I EE + Sbjct: 57 SGFKINFTTLLNENTNTYEVIKKEEVEPI 85 >gi|134298860|ref|YP_001112356.1| helix-turn-helix domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051560|gb|ABO49531.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1] Length = 134 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R+ G+ QE + GI V++YE I+E + + Sbjct: 13 VGGRIRYYRLAHGLLQEDVATKAGIDVCTVKRYENNQREESLEICNKIAEAIGIDPKLLY 72 Query: 75 D 75 D Sbjct: 73 D 73 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 GKRI+ R+ L ++Q+ G+ LG+ + V +EK + +++ L Sbjct: 84 GKRIKSSRIKLNLTQQDFGQLLGVHRKTVVCWEKARKKPLREHYLLLAKFL 134 >gi|331087784|ref|ZP_08336710.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409765|gb|EGG89201.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium 3_1_46FAA] Length = 181 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ R ++Q++L + L ++ Q V ++E G + ++ L+ + Sbjct: 37 NIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMD 90 >gi|325266057|ref|ZP_08132743.1| XRE family transcriptional regulator [Kingella denitrificans ATCC 33394] gi|324982695|gb|EGC18321.1| XRE family transcriptional regulator [Kingella denitrificans ATCC 33394] Length = 102 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ+ L + + ++ Q V E S +++ L++ ++ F Sbjct: 35 NRVRQFRKQKQLSQQALADLVEVSRQTVNMIENQDYNPTLSLCIRLAKALDTDLNALF 92 >gi|320547844|ref|ZP_08042128.1| cro/CI family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447604|gb|EFW88363.1| cro/CI family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 65 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 +I+ R +SQ +L E LG+T Q + EKG I++ I F FD Sbjct: 4 KIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAKYFGMTIEEIFIFD 63 Query: 76 VS 77 Sbjct: 64 EE 65 >gi|311900818|dbj|BAJ33226.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 470 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%) Query: 7 IPNPVDI-------NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 PNPV++ G +R R G +Q +LG +G V + E G R + Sbjct: 4 APNPVELPDGGTRQEFGALLRHWRRHAGWTQAQLGAAVGYDHTAVSRLEHGARRATPRLV 63 Query: 60 QHISEVLES 68 + I E+L + Sbjct: 64 RQIDELLGT 72 >gi|262067877|ref|ZP_06027489.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] gi|291378598|gb|EFE86116.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] Length = 231 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPI 70 +++G+ I+ RR L +S + + + L ++ + +YE + + +L +SE+L+ I Sbjct: 1 MSIGEIIKKRRKKLNLSLKDIAKKLNVSESSISRYENEEIKNMRIDKLILLSEILQVDI 59 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQ 60 KK +I + +++ R+ +S +K+ + L IT + KYE + + + Sbjct: 69 SRKKKKATLKEIEIANKLKTLRIENNLSLKKVADFLNITSSTILKYENTDITNIPIDNIN 128 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 ++E+ + S+ + ++I E Sbjct: 129 KLAEIYKVNPSYILGLENYDKNEIHLSEEE 158 >gi|257792947|ref|YP_003186346.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479639|gb|ACV59957.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 223 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESP 69 G+ +R R ++ +L G++ + + E G R L+ ++ L+ P Sbjct: 5 GQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVP 59 >gi|302557278|ref|ZP_07309620.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302474896|gb|EFL37989.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 273 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R +SQ +L G + + + E G +R + ++E L+ P+ Sbjct: 16 VGPLLRAWREQRRVSQLELALRAGSSARHISFVETGRSRPSEEMVLRLAEHLDVPV 71 >gi|242372616|ref|ZP_04818190.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349671|gb|EES41272.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 189 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +I+ R G SQE L E + ++ Q + +E + L + + + Sbjct: 1 MDISNQIKKFRQRDGYSQEFLAEKMFVSRQTISNWENNKSYPDIHNLLMMCNLFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|222081494|ref|YP_002540857.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221726173|gb|ACM29262.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 394 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 9/99 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+RL R G +Q E +G+ + EKG RV +Q ++ + + + Sbjct: 13 LGERLRLARESTGKTQADAAEAIGVARTTLVAMEKGQRRVKIGEMQQLARLYGTTANALM 72 Query: 75 -------DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++ P +EE V + + QL R Sbjct: 73 RKESVHIELVPKFRKLAENEERPVAE--AAELMAQLVRA 109 >gi|206559002|ref|YP_002229762.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035039|emb|CAR50911.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] Length = 189 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V +R+R R G+SQ +L + G+T + E+G L+ Sbjct: 1 MSETESMSTE----VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + E + ++ FF + S + + + + QL Sbjct: 57 KLLECIPMSLAEFFTFELVESRAVVSRRDEMPNLGNESLAFQLVGA 102 >gi|194016509|ref|ZP_03055123.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194011982|gb|EDW21550.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 153 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 26/51 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ R I +QE++ E +G++ Q V K+E G + + ++E+ Sbjct: 13 NLKKMRKIHRFTQEEVAEKIGVSRQAVAKWESGETVPDINNCKALAELYGV 63 >gi|167563856|ref|ZP_02356772.1| DNA-binding protein [Burkholderia oklahomensis EO147] gi|167570993|ref|ZP_02363867.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 195 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVS 61 Query: 70 ISFFFDVSPTVCS 82 ++ F+ + Sbjct: 62 LASLFEDDRAAQA 74 >gi|153954897|ref|YP_001395662.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855349|ref|YP_002472471.1| hypothetical protein CKR_2006 [Clostridium kluyveri NBRC 12016] gi|146347755|gb|EDK34291.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569073|dbj|BAH07057.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 71 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R L +SQ +L G++ Q + E G A +S+ L+ F Sbjct: 9 NRLKVARAELNISQGQLASMAGVSRQTISSIETGQYCPSAKLALILSKCLQKNFEDLF 66 >gi|126698714|ref|YP_001087611.1| putative transcriptional regulator [Clostridium difficile 630] gi|255100133|ref|ZP_05329110.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306023|ref|ZP_05350195.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|115250151|emb|CAJ67972.1| Transcriptional regulator, RmlC-type [Clostridium difficile] Length = 183 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PN VG+ +RL R +G+S +K + G++ + + E+G + S L IS Sbjct: 2 DNKFPN-----VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKIS 56 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM 92 + + + + I EE + Sbjct: 57 SGFKINFTTLLNENTNTYEVIKKEEVEPI 85 >gi|24378654|ref|NP_720609.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24376514|gb|AAN57915.1|AE014865_6 putative transcriptional regulator [Streptococcus mutans UA159] Length = 117 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + + V ++R R G+SQE L E G+ + + + E + + L+ + E Sbjct: 2 KKKSYLQKYVANKVRYHRQAQGISQESLSEKAGLGLKYINQIENQNHNLSLQTLEKVIEA 61 Query: 66 LESPISFFFDVSPTVCS 82 L FFD + + Sbjct: 62 LGMTPEDFFDFNSLEGT 78 >gi|30265281|ref|NP_847658.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47530816|ref|YP_022165.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49188093|ref|YP_031346.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118480295|ref|YP_897446.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165870026|ref|ZP_02214683.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167636539|ref|ZP_02394835.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641808|ref|ZP_02400049.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170689396|ref|ZP_02880588.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170708952|ref|ZP_02899384.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177654077|ref|ZP_02936087.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567768|ref|ZP_03020680.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196045702|ref|ZP_03112932.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225867228|ref|YP_002752606.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227818018|ref|YP_002818027.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229603683|ref|YP_002869472.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254686321|ref|ZP_05150180.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724317|ref|ZP_05186101.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254735184|ref|ZP_05192893.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744390|ref|ZP_05202070.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755692|ref|ZP_05207725.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759577|ref|ZP_05211602.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30259959|gb|AAP29144.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47505964|gb|AAT34640.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49182020|gb|AAT57396.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118419520|gb|ABK87939.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|164714349|gb|EDR19869.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510220|gb|EDR85625.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167528071|gb|EDR90871.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126117|gb|EDS95012.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170666623|gb|EDT17394.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172080960|gb|EDT66039.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561184|gb|EDV15157.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196023533|gb|EDX62210.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225788303|gb|ACO28520.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227006050|gb|ACP15793.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229268091|gb|ACQ49728.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 63 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NNVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|309778350|ref|ZP_07673275.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308913881|gb|EFP59696.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 45 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 23/40 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 +++GK I R LG +QE L L ++ V K+E GV+ Sbjct: 1 MDIGKNIARLRHELGYTQEALAARLHVSCAAVSKWEHGVS 40 >gi|304403822|ref|ZP_07385484.1| stress protein [Paenibacillus curdlanolyticus YK9] gi|304346800|gb|EFM12632.1| stress protein [Paenibacillus curdlanolyticus YK9] Length = 250 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGV-NRVGASRLQHISEVLES 68 +G + R +GM+Q++L E +G + + + E+G +R S+L ++E L Sbjct: 186 QIGHNVERVRRSIGMTQKQLAEKIGYKSASPISRLERGELDRFSHSQLLLLAEALNV 242 >gi|266625083|ref|ZP_06118018.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288863021|gb|EFC95319.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 151 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R+ +Q+K+ ECLGIT K E+G + + +L ++E ++ +++ Sbjct: 51 REMGNRLRQIRLEKNWTQDKMAECLGITKAFYGKIERGESSIALEKLALLNETMDIDLNY 110 Query: 73 FFDVS-----PTVCSDISSEENNVMDFI 95 P D+ E+ M+ + Sbjct: 111 LITGETIPVLPINFQDVPREKRYSMEQL 138 >gi|257066290|ref|YP_003152546.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798170|gb|ACV28825.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 206 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R M QE L + LGI + YE+ LQ ++ + Sbjct: 1 MSLGAKLKQLREEQEMKQETLAQILGINRATISMYERNQRVPSTEILQKYTKTFNVSSDY 60 Query: 73 FFDVSPTVCSDISSE 87 + ++I++E Sbjct: 61 LLGNTHYKSNNINNE 75 >gi|227112403|ref|ZP_03826059.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 197 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R L +S +L + G+ + + E G+ L ++ L+ +S Sbjct: 27 IRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALDVQVS 79 >gi|262201253|ref|YP_003272461.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084600|gb|ACY20568.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 105 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI + R MS+ +L +GI Q V E+G N I V + P+ F Sbjct: 14 NRIAVLRAERRMSRAELAALVGINVQSVGALERGDNYPSLDLAFRICAVFDLPVEAVF 71 >gi|226947857|ref|YP_002802948.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226844191|gb|ACO86857.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 130 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLD 59 >gi|224542833|ref|ZP_03683372.1| hypothetical protein CATMIT_02025 [Catenibacterium mitsuokai DSM 15897] gi|224524245|gb|EEF93350.1| hypothetical protein CATMIT_02025 [Catenibacterium mitsuokai DSM 15897] Length = 177 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R+ ++ E+L ++ + + E+ + + L I E L + + Sbjct: 1 MDLGRKIKQLRLANDLTLEELANRSELSKGFLSQVERNLTSPSVATLDDILEALGTNLHD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FFD ++ V + Sbjct: 61 FFDQQEDEQLVFGEKDFFVNE 81 >gi|254513121|ref|ZP_05125187.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221533120|gb|EEE36115.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 193 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +KK + +G+ ++ R ++ +L ++ + + E G LQ Sbjct: 1 MQDKKTETEL--EIGRTLQRLRQERSLTVTELAARAKVSTPMISRIENGHVSPSLGTLQA 58 Query: 62 ISEVLESPISFFF 74 +++ L + F Sbjct: 59 LADALSVSMMALF 71 >gi|146298449|ref|YP_001193040.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152867|gb|ABQ03721.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 137 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++G+ I R + M QE L +G Q + E G V +L+ I+E L Sbjct: 7 KHIGRNISRIRELRDMKQEALAIAIGTNQQSISIIE-GSESVDEEKLKKIAEALGVS 62 >gi|95929111|ref|ZP_01311856.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95135012|gb|EAT16666.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 198 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R M+ + L ++ + + E S L I++ E ++ Sbjct: 12 LQIGMKVRNLRQERRMTLQDLANMTRLSKPLLSQIENNQVIPPLSTLLRIAKAFEVSLNC 71 Query: 73 FFDVS 77 FF+ Sbjct: 72 FFEDE 76 >gi|296452101|ref|ZP_06893812.1| transcriptional regulator [Clostridium difficile NAP08] gi|296877457|ref|ZP_06901490.1| transcriptional regulator [Clostridium difficile NAP07] gi|296259051|gb|EFH05935.1| transcriptional regulator [Clostridium difficile NAP08] gi|296431469|gb|EFH17283.1| transcriptional regulator [Clostridium difficile NAP07] Length = 144 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R I +QE+L E L ++ Q + K+E G + ++++ + Sbjct: 5 INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDLV 64 Query: 75 DVSPTVCS 82 + S Sbjct: 65 NHSEEKTG 72 >gi|237798533|ref|ZP_04586994.1| hypothetical protein POR16_06826 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021386|gb|EGI01443.1| hypothetical protein POR16_06826 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 77 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +R++R+ LG+SQE+L E G+ + E+ V + ++ L+ Sbjct: 16 SNVRIKRLALGLSQEELAELAGLHRTYIGMLERSEKNVTIYNIWRLACALQV 67 >gi|224503546|ref|ZP_03671853.1| hypothetical protein LmonFR_13737 [Listeria monocytogenes FSL R2-561] gi|313633537|gb|EFS00345.1| gp33 [Listeria seeligeri FSL N1-067] Length = 161 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 5/129 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPIS 71 + K++ R G S+ ++ + LG+ +E G L+ I+++ + Sbjct: 2 KTLSKKLEYLRNSKGWSKVEVAKRLGMKASSTYSNWEYGNREPDIDTLKRIADLYGVSVD 61 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSIVSSE 130 + +D + +D +T + L+ +I+ + R +K + + + Sbjct: 62 YLIGRDKNNLADTIAAH---IDPNATEEELEEILAYIEEKQKEYRNEKEVNITEKAAEKD 118 Query: 131 KKYRTIEEE 139 K+ EE Sbjct: 119 KEVNKFVEE 127 >gi|170761379|ref|YP_001785917.1| DNA binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408368|gb|ACA56779.1| DNA binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 70 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R M+Q++L + + ++ + + EKG I+ V + I + Sbjct: 3 NRVKELRTASNMTQQQLADLVSVSSRTIISLEKGQYNPSIMLAYKIAIVFNTTIEDLY 60 >gi|167618211|ref|ZP_02386842.1| DNA-binding protein [Burkholderia thailandensis Bt4] Length = 185 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 63 >gi|84489417|ref|YP_447649.1| transcriptional regulator [Methanosphaera stadtmanae DSM 3091] gi|84372736|gb|ABC57006.1| predicted transcriptional regulator [Methanosphaera stadtmanae DSM 3091] Length = 72 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 ++R R +G+SQ+ L + + + Q + E G I+++L+ Sbjct: 4 KVRYLRQEMGISQQDLAKKVNVARQTISALEHGRYNPSLILAYQITKILK 53 >gi|28378640|ref|NP_785532.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] gi|28271476|emb|CAD64381.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1] Length = 375 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + NP+ +++ R+ G + + L E GI+ Q + YE G L Sbjct: 1 MMETTQF-NPI------QLKRARVARGKTMKVLAEETGISRQMISNYELGKTVPSGLNLV 53 Query: 61 HISEVLESPISFF 73 + VL P ++F Sbjct: 54 KLISVLNFPKNYF 66 >gi|322804888|emb|CBZ02447.1| putative HTH DNA binding protein [Clostridium botulinum H04402 065] Length = 70 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R M+Q++L + + ++ + + EKG I+ V + I + + Sbjct: 3 NRVKELRSASNMTQQQLADLVSVSSRTIISLEKGQYNPSIMLAYKIARVFNTTIEELYCL 62 Query: 77 SPTVCSD 83 + ++ Sbjct: 63 KENLENE 69 >gi|291460791|ref|ZP_06600181.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291416595|gb|EFE90314.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 64 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R +SQ++L + +G++ Q + EKG I L + F Sbjct: 5 RMKSARAAKDLSQQQLADLVGVSRQTINAIEKGDYNPTIRLCTAICRALSKTLDELF 61 >gi|229490457|ref|ZP_04384298.1| transcriptional regulator, Cro/CI family [Rhodococcus erythropolis SK121] gi|229322747|gb|EEN88527.1| transcriptional regulator, Cro/CI family [Rhodococcus erythropolis SK121] Length = 190 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 7/117 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+S ++ I + + E G+ L + L P S D Sbjct: 20 LKRERTRAGLSLSEVARRADIAKSTLSQLESGLGNPSLETLWALGNALGVPFSQLVDSQA 79 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 I + E + + L R+ +L R + + + Sbjct: 80 QTVQLIRAGEGPAIASANASYIATLL----APSPPNARR---DLYRIVAEPGEPRIS 129 >gi|237731603|ref|ZP_04562084.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907142|gb|EEH93060.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 178 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 2/80 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R S +L E G++ + + E+ + + L I+ L P S F +SP Sbjct: 12 LKTLRHQREWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTF--ISP 69 Query: 79 TVCSDISSEENNVMDFISTP 98 + + + TP Sbjct: 70 PESEGTLTFDPQQQAMVVTP 89 >gi|157325326|ref|YP_001468746.1| gp42 [Listeria phage B054] gi|300765823|ref|ZP_07075797.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|66733331|gb|AAY53147.1| gp42 [Listeria phage B054] gi|300513400|gb|EFK40473.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] Length = 61 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ R+ ++Q+++ + GI E+G R R + I+ L + FF+ Sbjct: 4 LKKYRLDKDLTQQEVADQCGIPKNTYASIEQGKRRPSPERAKIIASNLGFDWTIFFN 60 >gi|157370058|ref|YP_001478047.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157321822|gb|ABV40919.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 191 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R R G+SQ L E ++ + + E G V + L +++ L + Sbjct: 18 YLSSNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAGDRNVSLAVLDKLADALNISFTDL 77 Query: 74 FDVSPTVCSDISSE 87 T S + E Sbjct: 78 IQAPETRGSHLVGE 91 >gi|16126471|ref|NP_421035.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235251|ref|YP_002517688.1| Cro/CI family transcriptional regulator [Caulobacter crescentus NA1000] gi|13423739|gb|AAK24203.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964424|gb|ACL95780.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus NA1000] Length = 64 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L + L ++ Q + E G I+ + PI F Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFKIARLFGQPIESIFQD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|116618781|ref|YP_819152.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097628|gb|ABJ62779.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 111 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 48/101 (47%), Gaps = 9/101 (8%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF----DVSPT 79 G+S E+L + +GI+ + +++ V+ S + ++ L + + D++PT Sbjct: 12 KKRGISMERLAKEIGISKSGIYQWD--VHEPKPSTINKAADFLHVSVDYLMERTDDMNPT 69 Query: 80 VCSDISSEENNVMDFI---STPDGLQLNRYFIQIDDVKVRQ 117 D++ + V FI +T + ++ + ++I + R+ Sbjct: 70 SSDDLTEPQKQVAYFIDPQATKEDIEQIKKLVEIAKLSKRR 110 >gi|283783004|ref|YP_003373758.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|298253579|ref|ZP_06977369.1| transcriptional regulator [Gardnerella vaginalis 5-1] gi|283441892|gb|ADB14358.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|297532346|gb|EFH71234.1| transcriptional regulator [Gardnerella vaginalis 5-1] Length = 67 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ R G++QE+L + L ++ Q V E G I++ I F Sbjct: 3 NRLEQIRREKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIF 60 >gi|261253380|ref|ZP_05945953.1| DNA-binding protein [Vibrio orientalis CIP 102891] gi|260936771|gb|EEX92760.1| DNA-binding protein [Vibrio orientalis CIP 102891] Length = 182 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G R + R G+SQ +L + G+T + + E + L + + + + Sbjct: 1 MDTAIGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + + + + Sbjct: 61 AEFFAIDDPQPEQFYTRKEEQPEI 84 >gi|260583479|ref|ZP_05851227.1| repressor protein [Granulicatella elegans ATCC 700633] gi|260158105|gb|EEW93173.1| repressor protein [Granulicatella elegans ATCC 700633] Length = 227 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G SQ + + L I+ +E G L ++++ S+F Sbjct: 5 NRLKEIRTQQGYSQSFIAKQLEISRVAYHHWENGKTIPNQKNLIALADIFNVEASYF 61 >gi|255525370|ref|ZP_05392309.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296187980|ref|ZP_06856372.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255510941|gb|EET87242.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296047106|gb|EFG86548.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 67 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R GM Q +L E +G+ + + E G I++ + + F+ Sbjct: 7 KVKEYRENAGMKQSELAELIGVRRETIVHLENGRYNPSLKMGMDIAKAFHTTVEELFEFE 66 Query: 78 P 78 Sbjct: 67 D 67 >gi|258515640|ref|YP_003191862.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779345|gb|ACV63239.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 127 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 42/108 (38%), Gaps = 9/108 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ L S++ + + I+ + ++ G N A +L +++ I + Sbjct: 9 KRLSLLIKENKASKQAVANAINISRPAISQFASGENLPSAEKLVALADFFGVSIDYLV-G 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ N + DF + ++ +VRQ + ++++ Sbjct: 68 RSDDPRIPNALSNTICDFFADDSAPEM--------PPEVRQIVNKVIK 107 >gi|226307191|ref|YP_002767151.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226186308|dbj|BAH34412.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 268 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++VG ++ R ++Q L G++ + + E G ++ + H+SE L+ P+ Sbjct: 6 MDVGTELKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLDVPL 63 >gi|170750642|ref|YP_001756902.1| hypothetical protein Mrad2831_4252 [Methylobacterium radiotolerans JCM 2831] gi|170657164|gb|ACB26219.1| hypothetical protein Mrad2831_4252 [Methylobacterium radiotolerans JCM 2831] Length = 101 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Query: 54 VGASRLQH-ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 GA RL I+E L+ P + + +E + + L + +IDD Sbjct: 31 PGAGRLLQRIAEALQVPAASLY-------GPQGAERGAAVAGGRADEADALLHAYRRIDD 83 Query: 113 VKVRQKIIELVRSIVSS 129 ++R++++ LV+ + ++ Sbjct: 84 PELRRRVLTLVQDLAAA 100 >gi|291530986|emb|CBK96571.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] gi|291551031|emb|CBL27293.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] gi|295104178|emb|CBL01722.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 118 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLH 61 Query: 68 SPISFFFDVSPTVCSD 83 + + ++ + Sbjct: 62 ISLDTLINPDISLEDE 77 >gi|261879523|ref|ZP_06005950.1| transcriptional regulator [Prevotella bergensis DSM 17361] gi|270333840|gb|EFA44626.1| transcriptional regulator [Prevotella bergensis DSM 17361] Length = 73 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R R G+SQEKL E G+ + E+ + I+ L S F Sbjct: 16 KVRTLREQQGLSQEKLAERAGLHRTYIGMVERLERNPSLVCIYKIANGLGVHASQLF 72 >gi|256544375|ref|ZP_05471750.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] gi|256399907|gb|EEU13509.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] Length = 301 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 I + K+I+ R +SQ L GI + + + E GVN S L IS +L Sbjct: 14 ILLAKKIKEVRKNRNISQLDLSVEAGIDRKTISRIENGVNEPSFSTLYKISYILN 68 >gi|169333659|ref|ZP_02860852.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis DSM 17244] gi|169259653|gb|EDS73619.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis DSM 17244] Length = 129 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 N+G R++ R +QE + E I+ E G + + L I VL + Sbjct: 6 KNIGNRLKEIRKRERYTQENVAEFADISTSHYSHIENGTTKPSLNTLIRIVNVLNVSMD 64 >gi|220926083|ref|YP_002501385.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950690|gb|ACL61082.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 109 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 3 GNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G K P D+ + R+R R G+SQEK G+ ++Q +E R+G Sbjct: 10 GRKSHVRPEDVRAISARLRALRKTTGLSQEKFAARCGLGYKQWGNFEAEEGRIGIDAAIA 69 Query: 62 ISEVLESPISFFFDVSP 78 + + + + + P Sbjct: 70 LVKEFGVTLDWIYLGHP 86 >gi|154244524|ref|YP_001415482.1| helix-turn-helix domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158609|gb|ABS65825.1| helix-turn-helix domain protein [Xanthobacter autotrophicus Py2] Length = 263 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ D ++G R+R R + G++Q ++ E L I V + E + + S L+ + Sbjct: 15 PDATDGHIGHRLREIRKLAGLTQAQVAERLQIVQSAVTRLESRKD-IHVSTLRDYLGAMG 73 >gi|16129260|ref|NP_415815.1| DNA-binding transcriptional repressor for the puu divergon [Escherichia coli str. K-12 substr. MG1655] gi|24112698|ref|NP_707208.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a str. 301] gi|30062819|ref|NP_836990.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a str. 2457T] gi|74312331|ref|YP_310750.1| DNA-binding transcriptional repressor PuuR [Shigella sonnei Ss046] gi|82544245|ref|YP_408192.1| DNA-binding transcriptional repressor PuuR [Shigella boydii Sb227] gi|82777190|ref|YP_403539.1| DNA-binding transcriptional repressor PuuR [Shigella dysenteriae Sd197] gi|89108145|ref|AP_001925.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. W3110] gi|157158238|ref|YP_001462606.1| DNA-binding transcriptional repressor PuuR [Escherichia coli E24377A] gi|157160810|ref|YP_001458128.1| DNA-binding transcriptional repressor PuuR [Escherichia coli HS] gi|170020334|ref|YP_001725288.1| DNA-binding transcriptional repressor PuuR [Escherichia coli ATCC 8739] gi|170080978|ref|YP_001730298.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170680966|ref|YP_001743877.1| DNA-binding transcriptional repressor PuuR [Escherichia coli SMS-3-5] gi|170768785|ref|ZP_02903238.1| transcriptional regulator PuuR [Escherichia albertii TW07627] gi|187731345|ref|YP_001880138.1| DNA-binding transcriptional repressor PuuR [Shigella boydii CDC 3083-94] gi|188493518|ref|ZP_03000788.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|191165095|ref|ZP_03026939.1| transcriptional regulator PuuR [Escherichia coli B7A] gi|193062757|ref|ZP_03043851.1| transcriptional regulator PuuR [Escherichia coli E22] gi|194425904|ref|ZP_03058460.1| transcriptional regulator PuuR [Escherichia coli B171] gi|194437065|ref|ZP_03069164.1| transcriptional regulator PuuR [Escherichia coli 101-1] gi|209918542|ref|YP_002292626.1| DNA-binding transcriptional repressor PuuR [Escherichia coli SE11] gi|218553857|ref|YP_002386770.1| DNA-binding transcriptional repressor PuuR [Escherichia coli IAI1] gi|218694875|ref|YP_002402542.1| DNA-binding transcriptional repressor PuuR [Escherichia coli 55989] gi|218700021|ref|YP_002407650.1| DNA-binding transcriptional repressor PuuR [Escherichia coli IAI39] gi|218704829|ref|YP_002412348.1| DNA-binding transcriptional repressor PuuR [Escherichia coli UMN026] gi|238900535|ref|YP_002926331.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|253773699|ref|YP_003036530.1| DNA-binding transcriptional repressor PuuR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161379|ref|YP_003044487.1| DNA-binding transcriptional repressor PuuR [Escherichia coli B str. REL606] gi|256018450|ref|ZP_05432315.1| DNA-binding transcriptional repressor PuuR [Shigella sp. D9] gi|256022988|ref|ZP_05436853.1| DNA-binding transcriptional repressor PuuR [Escherichia sp. 4_1_40B] gi|260843648|ref|YP_003221426.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O103:H2 str. 12009] gi|260854998|ref|YP_003228889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O26:H11 str. 11368] gi|260867748|ref|YP_003234150.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O111:H- str. 11128] gi|293404842|ref|ZP_06648834.1| transcriptional regulator [Escherichia coli FVEC1412] gi|293409702|ref|ZP_06653278.1| HTH-type transcriptional regulator puuR [Escherichia coli B354] gi|293414636|ref|ZP_06657285.1| putrescine utilization regulator [Escherichia coli B185] gi|293433661|ref|ZP_06662089.1| HTH-type transcriptional regulator puuR [Escherichia coli B088] gi|297516524|ref|ZP_06934910.1| DNA-binding transcriptional repressor PuuR [Escherichia coli OP50] gi|298380485|ref|ZP_06990084.1| DNA-binding transcriptional repressor PuuR [Escherichia coli FVEC1302] gi|300818983|ref|ZP_07099187.1| cupin domain protein [Escherichia coli MS 107-1] gi|300822532|ref|ZP_07102671.1| cupin domain protein [Escherichia coli MS 119-7] gi|300897366|ref|ZP_07115793.1| cupin domain protein [Escherichia coli MS 198-1] gi|300904951|ref|ZP_07122769.1| cupin domain protein [Escherichia coli MS 84-1] gi|300919489|ref|ZP_07135988.1| cupin domain protein [Escherichia coli MS 115-1] gi|300926689|ref|ZP_07142464.1| cupin domain protein [Escherichia coli MS 182-1] gi|300927813|ref|ZP_07143375.1| cupin domain protein [Escherichia coli MS 187-1] gi|300935406|ref|ZP_07150404.1| cupin domain protein [Escherichia coli MS 21-1] gi|300948384|ref|ZP_07162487.1| cupin domain protein [Escherichia coli MS 116-1] gi|300954551|ref|ZP_07166997.1| cupin domain protein [Escherichia coli MS 175-1] gi|301017611|ref|ZP_07182285.1| cupin domain protein [Escherichia coli MS 69-1] gi|301022735|ref|ZP_07186583.1| cupin domain protein [Escherichia coli MS 196-1] gi|301304353|ref|ZP_07210466.1| cupin domain protein [Escherichia coli MS 124-1] gi|301326966|ref|ZP_07220258.1| cupin domain protein [Escherichia coli MS 78-1] gi|301647199|ref|ZP_07247020.1| cupin domain protein [Escherichia coli MS 146-1] gi|307137942|ref|ZP_07497298.1| DNA-binding transcriptional repressor PuuR [Escherichia coli H736] gi|307309944|ref|ZP_07589594.1| transcriptional regulator, XRE family [Escherichia coli W] gi|309788300|ref|ZP_07682904.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|309796914|ref|ZP_07691315.1| cupin domain protein [Escherichia coli MS 145-7] gi|312971493|ref|ZP_07785668.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|331641864|ref|ZP_08342999.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736] gi|331652348|ref|ZP_08353367.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718] gi|331662718|ref|ZP_08363641.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143] gi|331667689|ref|ZP_08368553.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271] gi|331672830|ref|ZP_08373616.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280] gi|331682793|ref|ZP_08383412.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299] gi|332279502|ref|ZP_08391915.1| transcriptional regulator PuuR [Shigella sp. D9] gi|71164830|sp|P0A9U6|PUUR_ECOLI RecName: Full=HTH-type transcriptional regulator puuR gi|71164831|sp|P0A9U7|PUUR_SHIFL RecName: Full=HTH-type transcriptional regulator puuR gi|1742129|dbj|BAA14868.1| DNA-binding transcriptional repressor [Escherichia coli str. K12 substr. W3110] gi|1787557|gb|AAC74381.1| DNA-binding transcriptional repressor for the puu divergon [Escherichia coli str. K-12 substr. MG1655] gi|24051617|gb|AAN42915.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041067|gb|AAP16797.1| hypothetical protein S1386 [Shigella flexneri 2a str. 2457T] gi|58197515|dbj|BAD88707.1| transcriptional repressor [Escherichia coli K-12] gi|73855808|gb|AAZ88515.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81241338|gb|ABB62048.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81245656|gb|ABB66364.1| conserved hypothetical protein [Shigella boydii Sb227] gi|157066490|gb|ABV05745.1| transcriptional regulator PuuR [Escherichia coli HS] gi|157080268|gb|ABV19976.1| transcriptional regulator PuuR [Escherichia coli E24377A] gi|169755262|gb|ACA77961.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169888813|gb|ACB02520.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170122333|gb|EDS91264.1| transcriptional regulator PuuR [Escherichia albertii TW07627] gi|170518684|gb|ACB16862.1| transcriptional regulator PuuR [Escherichia coli SMS-3-5] gi|187428337|gb|ACD07611.1| transcriptional regulator PuuR [Shigella boydii CDC 3083-94] gi|188488717|gb|EDU63820.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|190904867|gb|EDV64572.1| transcriptional regulator PuuR [Escherichia coli B7A] gi|192931879|gb|EDV84479.1| transcriptional regulator PuuR [Escherichia coli E22] gi|194415959|gb|EDX32225.1| transcriptional regulator PuuR [Escherichia coli B171] gi|194424048|gb|EDX40036.1| transcriptional regulator PuuR [Escherichia coli 101-1] gi|209911801|dbj|BAG76875.1| conserved hypothetical protein [Escherichia coli SE11] gi|218351607|emb|CAU97319.1| DNA-binding transcriptional repressor [Escherichia coli 55989] gi|218360625|emb|CAQ98183.1| DNA-binding transcriptional repressor [Escherichia coli IAI1] gi|218370007|emb|CAR17781.1| DNA-binding transcriptional repressor [Escherichia coli IAI39] gi|218431926|emb|CAR12811.1| DNA-binding transcriptional repressor [Escherichia coli UMN026] gi|238860975|gb|ACR62973.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|242377078|emb|CAQ31804.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|253324743|gb|ACT29345.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973280|gb|ACT38951.1| DNA-binding transcriptional repressor [Escherichia coli B str. REL606] gi|253977494|gb|ACT43164.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|257753647|dbj|BAI25149.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O26:H11 str. 11368] gi|257758795|dbj|BAI30292.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O103:H2 str. 12009] gi|257764104|dbj|BAI35599.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O111:H- str. 11128] gi|260449568|gb|ACX39990.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|281600723|gb|ADA73707.1| HTH-type transcriptional regulator puuR [Shigella flexneri 2002017] gi|284921184|emb|CBG34250.1| transcriptional regulator of the polyamine metabolism genes [Escherichia coli 042] gi|291324480|gb|EFE63902.1| HTH-type transcriptional regulator puuR [Escherichia coli B088] gi|291427050|gb|EFF00077.1| transcriptional regulator [Escherichia coli FVEC1412] gi|291434694|gb|EFF07667.1| putrescine utilization regulator [Escherichia coli B185] gi|291470170|gb|EFF12654.1| HTH-type transcriptional regulator puuR [Escherichia coli B354] gi|298277927|gb|EFI19441.1| DNA-binding transcriptional repressor PuuR [Escherichia coli FVEC1302] gi|299881132|gb|EFI89343.1| cupin domain protein [Escherichia coli MS 196-1] gi|300318461|gb|EFJ68245.1| cupin domain protein [Escherichia coli MS 175-1] gi|300358850|gb|EFJ74720.1| cupin domain protein [Escherichia coli MS 198-1] gi|300400105|gb|EFJ83643.1| cupin domain protein [Escherichia coli MS 69-1] gi|300403100|gb|EFJ86638.1| cupin domain protein [Escherichia coli MS 84-1] gi|300413443|gb|EFJ96753.1| cupin domain protein [Escherichia coli MS 115-1] gi|300417265|gb|EFK00576.1| cupin domain protein [Escherichia coli MS 182-1] gi|300452059|gb|EFK15679.1| cupin domain protein [Escherichia coli MS 116-1] gi|300459384|gb|EFK22877.1| cupin domain protein [Escherichia coli MS 21-1] gi|300464098|gb|EFK27591.1| cupin domain protein [Escherichia coli MS 187-1] gi|300524948|gb|EFK46017.1| cupin domain protein [Escherichia coli MS 119-7] gi|300528444|gb|EFK49506.1| cupin domain protein [Escherichia coli MS 107-1] gi|300840340|gb|EFK68100.1| cupin domain protein [Escherichia coli MS 124-1] gi|300846437|gb|EFK74197.1| cupin domain protein [Escherichia coli MS 78-1] gi|301074685|gb|EFK89491.1| cupin domain protein [Escherichia coli MS 146-1] gi|306909662|gb|EFN40156.1| transcriptional regulator, XRE family [Escherichia coli W] gi|308119442|gb|EFO56704.1| cupin domain protein [Escherichia coli MS 145-7] gi|308923682|gb|EFP69185.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|309701599|emb|CBJ00906.1| transcriptional regulator of the polyamine metabolism genes [Escherichia coli ETEC H10407] gi|310336090|gb|EFQ01290.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|313649492|gb|EFS13923.1| helix-turn-helix family protein [Shigella flexneri 2a str. 2457T] gi|315060554|gb|ADT74881.1| DNA-binding transcriptional repressor [Escherichia coli W] gi|315135938|dbj|BAJ43097.1| transcriptional regulator [Escherichia coli DH1] gi|315254342|gb|EFU34310.1| cupin domain protein [Escherichia coli MS 85-1] gi|315619382|gb|EFU99926.1| helix-turn-helix family protein [Escherichia coli 3431] gi|320180265|gb|EFW55200.1| Putrescine utilization regulator [Shigella boydii ATCC 9905] gi|320187693|gb|EFW62369.1| Putrescine utilization regulator [Shigella flexneri CDC 796-83] gi|320199337|gb|EFW73928.1| Putrescine utilization regulator [Escherichia coli EC4100B] gi|323153351|gb|EFZ39608.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|323162336|gb|EFZ48191.1| helix-turn-helix family protein [Escherichia coli E128010] gi|323168281|gb|EFZ53966.1| helix-turn-helix family protein [Shigella sonnei 53G] gi|323172339|gb|EFZ57976.1| helix-turn-helix family protein [Escherichia coli LT-68] gi|323179742|gb|EFZ65303.1| helix-turn-helix family protein [Escherichia coli 1180] gi|323185537|gb|EFZ70898.1| helix-turn-helix family protein [Escherichia coli 1357] gi|323378885|gb|ADX51153.1| Cupin 2 conserved barrel domain protein [Escherichia coli KO11] gi|323937624|gb|EGB33892.1| cupin domain-containing protein [Escherichia coli E1520] gi|323942417|gb|EGB38587.1| cupin domain-containing protein [Escherichia coli E482] gi|323947750|gb|EGB43753.1| cupin domain-containing protein [Escherichia coli H120] gi|323962457|gb|EGB58039.1| cupin domain-containing protein [Escherichia coli H489] gi|323964563|gb|EGB60037.1| cupin domain-containing protein [Escherichia coli M863] gi|323973458|gb|EGB68644.1| cupin domain-containing protein [Escherichia coli TA007] gi|323977066|gb|EGB72153.1| cupin domain-containing protein [Escherichia coli TW10509] gi|324117506|gb|EGC11412.1| cupin domain-containing protein [Escherichia coli E1167] gi|327253996|gb|EGE65625.1| helix-turn-helix family protein [Escherichia coli STEC_7v] gi|331038662|gb|EGI10882.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736] gi|331050626|gb|EGI22684.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718] gi|331061140|gb|EGI33104.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143] gi|331065274|gb|EGI37169.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271] gi|331070051|gb|EGI41420.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280] gi|331080424|gb|EGI51603.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299] gi|332091697|gb|EGI96777.1| helix-turn-helix family protein [Shigella boydii 5216-82] gi|332094835|gb|EGI99879.1| helix-turn-helix family protein [Shigella boydii 3594-74] gi|332101854|gb|EGJ05200.1| transcriptional regulator PuuR [Shigella sp. D9] gi|332342898|gb|AEE56232.1| DNA-binding transcriptional repressor PuuR [Escherichia coli UMNK88] gi|332757959|gb|EGJ88286.1| helix-turn-helix family protein [Shigella flexneri 4343-70] gi|332759548|gb|EGJ89856.1| helix-turn-helix family protein [Shigella flexneri 2747-71] gi|332760399|gb|EGJ90689.1| helix-turn-helix family protein [Shigella flexneri K-671] gi|332767540|gb|EGJ97734.1| DNA-binding transcriptional repressor [Shigella flexneri 2930-71] gi|333005778|gb|EGK25296.1| helix-turn-helix family protein [Shigella flexneri K-218] gi|333007643|gb|EGK27121.1| helix-turn-helix family protein [Shigella flexneri K-272] gi|333019110|gb|EGK38400.1| helix-turn-helix family protein [Shigella flexneri K-304] gi|333019578|gb|EGK38858.1| helix-turn-helix family protein [Shigella flexneri K-227] Length = 185 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R G+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMD 93 + + ++++++ Sbjct: 69 EPEKPDEPQVVINQDDLIE 87 >gi|320182370|gb|EFW57268.1| putative transcriptional regulator [Shigella boydii ATCC 9905] gi|323170913|gb|EFZ56563.1| peptidase S24-like family protein [Escherichia coli LT-68] Length = 224 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 G+SQ +L + +GI+ +QK G G+ ++ ++ L+ + + Sbjct: 2 RSAGVSQSQLADMVGISQPAIQKMSSGKTN-GSRKMVELANALKVRPEWLSSGIGEMRDG 60 Query: 84 ISSEENNVMD 93 E +N+ + Sbjct: 61 THEEPSNIRE 70 >gi|309803479|ref|ZP_07697573.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|309805373|ref|ZP_07699422.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|309810041|ref|ZP_07703887.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|312870910|ref|ZP_07731015.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312872192|ref|ZP_07732265.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325913360|ref|ZP_08175727.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|329919644|ref|ZP_08276622.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] gi|308164488|gb|EFO66741.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|308165300|gb|EFO67534.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|308169540|gb|EFO71587.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|311092276|gb|EFQ50647.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311093600|gb|EFQ51939.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477286|gb|EGC80431.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|328937296|gb|EGG33720.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] Length = 59 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 30/54 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ R+ G++Q + + L + FQ + KYE +++ L+ + + + P+++ Sbjct: 5 LKAARVNKGLTQREAAKYLKVNFQTISKYEIDSSKIPMKLLKDMCSLYKIPMNY 58 >gi|308176372|ref|YP_003915778.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743835|emb|CBT74807.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 187 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G R+R R M+ +++ E G+T + + E+ + S L + EVL + Sbjct: 13 INIGARLRGVRQTQRMTIDQVAELSGLTKGFLSRVERDLTSPSVSTLLRLCEVLSIEVGT 72 Query: 73 FFDVSPT 79 F+V T Sbjct: 73 LFEVPET 79 >gi|312200129|ref|YP_004020190.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311231465|gb|ADP84320.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 273 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G IR +R +S +L + G++ + + E+G+ + A LQ I++ L Sbjct: 7 RELGDYIRDQRRAAHISLRQLAQQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEV 66 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + V + + E+ ++ Sbjct: 67 LY-VQAGILEEREGGEDVHAAVLAD 90 >gi|322421833|ref|YP_004201056.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320128220|gb|ADW15780.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 124 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G IR R G++Q++L + GI + + E G +G + +++ L F Sbjct: 66 GVAIRGARGKEGLTQKQLAQRTGIAQHHISEMENGKRPIGKDTARRLADALNIDYRVF 123 >gi|218900380|ref|YP_002448791.1| DNA-binding protein [Bacillus cereus G9842] gi|218541269|gb|ACK93663.1| DNA-binding protein [Bacillus cereus G9842] Length = 63 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENKKYNPSLALCIELAKALKTDLNSLF 59 >gi|167769004|ref|ZP_02441057.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] gi|167668644|gb|EDS12774.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] Length = 136 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + + + +GK IR R G +QE+L + + K E G + L+ Sbjct: 1 MLKQEVMSMKLHRMLGKNIRFWREARGFTQEELAFRAQTSSSYISKMELGKENPTITVLE 60 Query: 61 HISEVLESPI 70 I++ L Sbjct: 61 RIAKALAIDP 70 >gi|127511947|ref|YP_001093144.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126637242|gb|ABO22885.1| transcriptional regulator, XRE family [Shewanella loihica PV-4] Length = 168 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---FD 75 IR R+ SQE+L + G+ + +Q+ E+G + L+ ++ V E P+ D Sbjct: 3 IRKLRLQRAWSQEQLAQHSGLNVRTIQRLERG-QKASLESLKSLASVFEVPLEALQQEMD 61 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 +S T+ N + IS+ + Sbjct: 62 MSMTMDKQTDEAVNESLAPISSDE 85 >gi|325846548|ref|ZP_08169463.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481306|gb|EGC84347.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 65 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 I+ R G+ QE L + LG++ Q + E IS + ++ F F+ Sbjct: 5 IKKLRKENGLRQEDLAKKLGVSRQTIIAIENNKYDPSLELAIKISIFFDKTVNDIFLFE 63 >gi|322804925|emb|CBZ02484.1| transcriptional regulator, XRE family [Clostridium botulinum H04402 065] Length = 130 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLD 59 >gi|295107974|emb|CBL21927.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 71 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RI+ R+ +SQ +LGE L I+ + YE G + L +++ ++ I + Sbjct: 4 QRIQDLRVDSDLSQRQLGEILHISQRSYSHYETGSRGIPIEMLIRLADYYDTTIDYL 60 >gi|260426951|ref|ZP_05780930.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421443|gb|EEX14694.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 463 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 50/129 (38%), Gaps = 12/129 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R LG++Q+ LGI+ + + E V + + +++ ++ Sbjct: 6 LYAGAKLRDLRGRLGLTQKDFAGKLGISLPYLNQMENNNRPVSTTVVLALAQEFGFDVTE 65 Query: 73 F---------FDVSPTVCSDISSEENNVMDF-ISTPDGLQLNRYFIQIDDV--KVRQKII 120 D+ + + E + D ++ + L R F+++ + +++ Sbjct: 66 LGQGDSERLVTDMREALADPVFGEAPPLADLRLTASNAPALARAFLELHRAYRQTHERLA 125 Query: 121 ELVRSIVSS 129 L ++ Sbjct: 126 SLDEALGRE 134 >gi|227484905|ref|ZP_03915221.1| hypothetical protein HMPREF0072_0308 [Anaerococcus lactolyticus ATCC 51172] gi|227237060|gb|EEI87075.1| hypothetical protein HMPREF0072_0308 [Anaerococcus lactolyticus ATCC 51172] Length = 205 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPI 70 + +G+ I+ RR L S E L +G + + +YE+ N + I E+L++ Sbjct: 1 MKIGQAIKYRREELNYSLEYLANRIGKSIPTMYRYERSENPDVLSLDVFLEICEILKTTP 60 Query: 71 S 71 Sbjct: 61 D 61 >gi|227892655|ref|ZP_04010460.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] gi|227865526|gb|EEJ72947.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] Length = 272 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R+ G +Q+++ + ++ K E+ ++ + A L I + + Sbjct: 1 MTIGELLKSTRLNAGWTQKEMAAGV-VSESFYSKVERSIHHIDADTLLEILKAKRINPAL 59 Query: 73 FFDVSPTVCSDISS 86 FF+ +PT + +S Sbjct: 60 FFNAAPTDEKNTAS 73 >gi|301066017|ref|YP_003788040.1| hypothetical protein LCAZH_0946 [Lactobacillus casei str. Zhang] gi|300438424|gb|ADK18190.1| hypothetical membrane protein [Lactobacillus casei str. Zhang] Length = 202 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G+++ R M+QE L L +T Q + +E+ + + L +S+V ++ + Sbjct: 1 MKFGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLD 59 >gi|255655114|ref|ZP_05400523.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451102|ref|ZP_06892844.1| DNA-binding protein [Clostridium difficile NAP08] gi|296880545|ref|ZP_06904507.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260109|gb|EFH06962.1| DNA-binding protein [Clostridium difficile NAP08] gi|296428499|gb|EFH14384.1| DNA-binding protein [Clostridium difficile NAP07] Length = 183 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PN VG+ +RL R +G+S +K + G++ + + E+G + S L IS Sbjct: 2 DNKFPN-----VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKIS 56 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM 92 + + + + I EE + Sbjct: 57 SGFKINFTTLLNENTNTYEVIKKEEVEPI 85 >gi|167464931|ref|ZP_02330020.1| Transcriptional regulator, xre family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 57 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N G+ + R GMSQE+L E L + Q + E+GV L+ I+++ Sbjct: 4 NFGQNVARLRKKKGMSQEELAEKLDVKKQTISNIERGVRYPTFENLEKIAQLF 56 >gi|166033445|ref|ZP_02236274.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC 27755] gi|225374572|ref|ZP_03751793.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans DSM 16841] gi|166026630|gb|EDR45387.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC 27755] gi|225213632|gb|EEG95986.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans DSM 16841] gi|291524361|emb|CBK89948.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 118 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 22/132 (16%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLH 61 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII----ELV 123 + + D+S E+ +G+ + ++R ++ E V Sbjct: 62 ISLDTL------INPDVSLED----------EGVNQMKMLYSSCPPEMRDTLLHHTQETV 105 Query: 124 RSIVSSEKKYRT 135 + + KK+ T Sbjct: 106 KELTELSKKFET 117 >gi|126733799|ref|ZP_01749546.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Roseobacter sp. CCS2] gi|126716665|gb|EBA13529.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Roseobacter sp. CCS2] Length = 68 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R ++Q +L + +G++ + + E GV + +++ L + F Sbjct: 9 LRAHRTQAKLTQAELADLVGVSRKTINTIENGVFTPSTTLALTLADQLGCSVHDLF 64 >gi|146305289|ref|YP_001185754.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145573490|gb|ABP83022.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 182 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 8/97 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPIS 71 ++VG R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 1 MDVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLK---KVLGGIPMS 57 Query: 72 F--FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF D+ + + + + D S ++L Sbjct: 58 LVEFFSLDLEQENQTQVVYRASELTDICSGAITMKLI 94 >gi|87200219|ref|YP_497476.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135900|gb|ABD26642.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 107 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G +I R G++ E+L + + + + E K V R A +L+ I+ L +F Sbjct: 5 LGTKINELRRERGLTLEQLAQATDSSKSYMWEIENKDVARPSAEKLERIANALGVTSAFL 64 Query: 74 FDVSPTVCSDISSEENNVMDF 94 D S ++ + F Sbjct: 65 IDASQVKPTEDVEDTAFFHRF 85 >gi|253690628|ref|YP_003019818.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757206|gb|ACT15282.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 188 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 2/94 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G ++ R G S + E G++ + + E+G + + L I+ L Sbjct: 1 MSDELTHRIGNTLKTLRQEKGWSLTRSSEETGVSKAMLGQIERGESSPTVATLWKIATGL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 S F + PT+ + + + + Sbjct: 61 NVAFSTF--IQPTLAEEDVAYRSVANSAFREREA 92 >gi|282600636|ref|ZP_05979286.2| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] gi|282571663|gb|EFB77198.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] Length = 120 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 4 PIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLH 63 Query: 68 SPISFFFDVSPTVCSD 83 + + ++ + Sbjct: 64 ISLDTLINPDISLEDE 79 >gi|255657067|ref|ZP_05402476.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] Length = 141 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R I +QE+L E L ++ Q + K+E G + ++++ + Sbjct: 2 INENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDLV 61 Query: 75 DVSPTVCS 82 + S Sbjct: 62 NHSEEKTG 69 >gi|125717050|ref|YP_001034183.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125496967|gb|ABN43633.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 150 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 10/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R+ G +Q +L E L ++ V K+E N L++++ + Sbjct: 4 VGERIKKLRIAQGFTQARLAEILHVSKAAVCKWESNTNLPKVMELKNMNSPFHVSADYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ + E + + Y Q++ + +Q I+ V S +E++ Sbjct: 64 GLANRSAIEQLGSEKKLK---------AMAGYLHQLESPERKQACIDFVIS-QFNEQEAV 113 Query: 135 TIEEE 139 IE E Sbjct: 114 KIEAE 118 >gi|145220707|ref|YP_001131385.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442341|ref|YP_004075220.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] gi|145213193|gb|ABP42597.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315260644|gb|ADT97385.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] Length = 182 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR +R +S +L E G++ + + E+G+ + A L I++ L + Sbjct: 21 IGSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVLY 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + + + N V D I T + Sbjct: 81 IQAGILE---PGDTNEVRDAIITDMAI 104 >gi|163938006|ref|YP_001642891.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865861|gb|ABY46916.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 64 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+L R+ ++QE+L + + Q + EKG I++ L+ ++ F Sbjct: 3 NKIKLSRIEKSLTQEQLAFQVKVARQTIGLIEKGKYNPSLQLCLAIAKALDKTLNDLF 60 >gi|321156891|emb|CBW38880.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae] Length = 420 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-----ESPIS 71 ++++ +R+ G+SQ +L GIT Q + E G + Q + E L ++P+ Sbjct: 13 QQLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLFEALERFNPDAPLE 72 Query: 72 FFFD 75 FD Sbjct: 73 MLFD 76 >gi|294499832|ref|YP_003563532.1| HTH-type transcriptional regulator AnsR [Bacillus megaterium QM B1551] gi|294349769|gb|ADE70098.1| HTH-type transcriptional regulator ansR (Ans operon repressor) [Bacillus megaterium QM B1551] Length = 118 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 2/89 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 R+ R S + + L I YE G R L I+E+ ++ + Sbjct: 3 SRLAQLRKEKKWSLQYTADQLEIAKSTYAGYESGYRRPSLEALVTIAELFDTSTDYLLGK 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + P SD E + T DG +L Sbjct: 63 EKEPHSLSDAPIELTSPQTHTITVDGAEL 91 >gi|291296947|ref|YP_003508345.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290471906|gb|ADD29325.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 230 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +R R G+SQE L + G+ V + E+G + L+ ++ L+ + Sbjct: 10 QNLRTLRYQRGLSQEDLADLAGLHRTYVSEVERGKRNLSLDNLERLANALQVEAAKLVSP 69 Query: 77 SPTVCSDIS 85 + +DI+ Sbjct: 70 NSFSTTDIA 78 >gi|269123675|ref|YP_003306252.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] gi|268315001|gb|ACZ01375.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] Length = 115 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 1/105 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R L +S +K G LG+ + E + ++ I + Sbjct: 3 NRVKELRKKLKLSGDKFGSKLGVKRSTISNLENQTRNLTEQMIKSICREFNVNEEWLRYG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + + + + + TP L + + + + D ++RQK I Sbjct: 63 NGPMFNSLKEISLDELALDLTPLELNIIKAYFSL-DKEIRQKAIA 106 >gi|221271509|dbj|BAH15061.1| hypothetical protein [Vibrio parahaemolyticus] gi|328469183|gb|EGF40129.1| hypothetical protein VP10329_09881 [Vibrio parahaemolyticus 10329] Length = 68 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G +R R G+SQ+KL I V + E+G + + I+ VL+ I Sbjct: 9 GYNVRSMRKDKGISQDKLALAADIDRSYVGRIERGEVNITLEKAYQIASVLQCDI 63 >gi|297619135|ref|YP_003707240.1| XRE family transcriptional regulator [Methanococcus voltae A3] gi|297378112|gb|ADI36267.1| transcriptional regulator, XRE family [Methanococcus voltae A3] Length = 194 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R + MS E+L + G + ++K E G L I+ L + F Sbjct: 7 QVGIKIKKVRELNNMSIEELAKVSGNDVELLKKIENGDLIPSLKPLIAIARALGVRLGTF 66 Query: 74 FDVSPTVCSDIS--SEENNVMDFISTP 98 D P + +S NV+ F Sbjct: 67 LDDLPELGPVVSRFGASENVVRFSGKK 93 >gi|116332766|ref|YP_794293.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098113|gb|ABJ63262.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 104 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 11/97 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R ++Q+ + + ++ Q + +E G + L +S + + Sbjct: 1 MTLGAKLKQARADHQLTQQAVATQVAVSRQTISSWETGKSFPDIDSLVTLSNLYGLSLDI 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 E+ ++D++ + L+ R Q Sbjct: 61 LI-----------KEDTGMLDYLRKSEILRKLRPIYQ 86 >gi|159898022|ref|YP_001544269.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891061|gb|ABX04141.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 71 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R+ R SQ L + LG++ Q + E G I+++ E I F+ Sbjct: 3 NRLRVLRAEREWSQADLAQALGVSRQTINALETGKYDPSLPLAFKIADLFELAIEQIFER 62 Query: 77 SPTVCS 82 + Sbjct: 63 PSADQA 68 >gi|56461519|ref|YP_156800.1| Cro/CI family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180529|gb|AAV83251.1| Transcriptional regulator, Cro/CI family [Idiomarina loihiensis L2TR] Length = 191 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K ++ + KR+ R GMS ++L + I+ + + EKG L Sbjct: 1 MTDKDKTA--INEAIAKRVYTFRKQYGMSLDELAKNAEISKGMLVQIEKGRANPSIGILC 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 ++ L ++ VS I ++ Sbjct: 59 KLANALAVSVADIVAVSDDPKVTIRQPQD 87 >gi|307308819|ref|ZP_07588507.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306900624|gb|EFN31236.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 472 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+++R R ++Q + E +GI+ + + E V A+ L ++E + I+ Sbjct: 6 LYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 64 >gi|291550212|emb|CBL26474.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 116 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +I GMSQ++ + GI + ++K + ++ I EVL+ Sbjct: 2 KTISDKIFELLKEKGMSQKEFAQRTGIAESSISDWKKKRTNPVSDKILIICEVLDVTP-- 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDDVKVRQKIIELVRSI 126 +++ + ++ + + L + ++ D ++++I + ++ Sbjct: 60 -YELLSGA-EHTGNRSRYNNTYVISKETEIGMLVETYQKL-DTNAQKRLIGYLEAL 112 >gi|291539591|emb|CBL12702.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 280 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E LG + + V K+E+G+ S + E+L ++ F +++ + Sbjct: 1 MTQKQLAEKLGKSDKSVSKWERGICLPDVSVYLELCEILGISLNEFLAGEDIEVTNVEKK 60 Query: 88 ENNVM 92 + + Sbjct: 61 SEDTL 65 >gi|163841767|ref|YP_001626172.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162955243|gb|ABY24758.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 79 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV +I N IR R G M+Q +L E +G+T Q + E+G Sbjct: 1 MVKPTRISNS--------IRGLRFSHGEMTQAELAERIGVTRQTIIAIEQGKYSPSLEVA 52 Query: 60 QHISEVLESPISFFF 74 I+ +L+ + F Sbjct: 53 FQIAGILQVRLEDVF 67 >gi|154687854|ref|YP_001423015.1| putative transcriptional regulator [Bacillus amyloliquefaciens FZB42] gi|126363018|emb|CAM35832.1| hypothetical protein RBAM03558 [Bacillus amyloliquefaciens FZB42] gi|154353705|gb|ABS75784.1| putative transcriptional regulator [Bacillus amyloliquefaciens FZB42] Length = 67 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 21/59 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I+ R +SQ L + +T Q + E S I+ L + I F+ Sbjct: 3 NNIKKLRTAADISQNDLAKLCNVTRQTINAIENNKYDPTLSLAFSIAHALNTGIDKVFN 61 >gi|78187738|ref|YP_375781.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167640|gb|ABB24738.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 120 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +GK IR R+ G SQE L E G+ + E+G + I++ L Sbjct: 11 LGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGERNITLLNYAKIADALN 63 >gi|293392401|ref|ZP_06636723.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291425055|gb|EFE98262.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 228 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R + R G+SQ+ L +G+T Q + K E G+ + +++ ++ L + Sbjct: 6 ERFKFARENSGLSQDDLAAKVGVTQQSIAKIENGIT-LQPRKIKELALSLGVSQQWL 61 >gi|317130649|ref|YP_004096931.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475597|gb|ADU32200.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 68 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 23/47 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++++ R + ++Q++L E +G+T Q + EKG I Sbjct: 4 NKVKIARTQVNLTQQQLAEKIGVTRQTISLIEKGKYNPTLKLCLDIC 50 >gi|257439368|ref|ZP_05615123.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198243|gb|EEU96527.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 86 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG---ASRLQHISEVLESPIS 71 ++++ R G+SQ +L E G+ + QKYE+G + + L I + L +S Sbjct: 12 EKLQKLRQAAGLSQSQLAEAAGVNVRMYQKYEQGDRDISKAQLTTLLRICKALSCKLS 69 >gi|253576963|ref|ZP_04854287.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843694|gb|EES71718.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 115 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 49/109 (44%), Gaps = 5/109 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+++R R ++Q++ +G++ + E+GV + + + +++ Sbjct: 1 MNLGEKVRTIRKSHELNQKEFALKIGVSQGTLSDIERGVCLPSCETIIALKNTFQCDLNW 60 Query: 73 FFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S ISSEE ++ I + N + +I ++K+R+ Sbjct: 61 LLSDYDESFSQTPTYISSEELKLLTSIRALPAQEKNELY-EIIEIKMRK 108 >gi|228908228|ref|ZP_04072074.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] gi|228851426|gb|EEM96234.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] Length = 292 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ Sbjct: 5 NLGIIIKGLRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|225568854|ref|ZP_03777879.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] gi|225162353|gb|EEG74972.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] Length = 138 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I + +R R ++Q+ L E L I+ Q YE L +++ Sbjct: 1 MPN---IQLANNLRYLRKQNKLTQKDLSEMLNISRQAYSNYETSKRTPDLDSLLYLAGFY 57 Query: 67 ESPISFFFDVS-PTVCSDISSEENNVMD 93 + S P+ ++ ++ + Sbjct: 58 NVNLDSLVLGSLPSPDQADAAASESIAE 85 >gi|218282728|ref|ZP_03488925.1| hypothetical protein EUBIFOR_01511 [Eubacterium biforme DSM 3989] gi|218216373|gb|EEC89911.1| hypothetical protein EUBIFOR_01511 [Eubacterium biforme DSM 3989] Length = 177 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 39/81 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R G++ E+L +T + + E+ + S L++I E L + ++ Sbjct: 1 MKIGKKLKELRTQNGLTLEELANRSELTKGFLSQLERDLTSPNISALENILEALGTNLAD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S +++ V + Sbjct: 61 FFQSSKEEQIVFHTQDFFVNE 81 >gi|167465718|ref|ZP_02330807.1| transcriptional regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 70 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 V +RIR R + G +Q +L + +G++ + E+G LQ IS+VL+ Sbjct: 6 VAQRIRAFRKLKGYTQNELADEIGVSISVLGSIERGTRSADLKILQKISDVLKI 59 >gi|166033247|ref|ZP_02236076.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC 27755] gi|166027604|gb|EDR46361.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC 27755] Length = 354 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+ I R M+Q +L E + +T + + ++E+G+ L+ +++VL + Sbjct: 4 KQFGQFIAGIRKEKKMTQAELAEKIHVTDKAISRWERGLGFPDIQTLEPLAQVLGISV 61 >gi|163757965|ref|ZP_02165053.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] gi|162284254|gb|EDQ34537.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] Length = 231 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +++ R+ G++Q + E +G +++ E+G + ++ +E + + Sbjct: 165 KEIGAKLKAARLEAGVTQAVVAEAMGTKENAIRRLERGEHSPSIDTIRKYAEAIGYDVGL 224 Query: 73 FF 74 F Sbjct: 225 SF 226 >gi|119505191|ref|ZP_01627266.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] gi|119458882|gb|EAW39982.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] Length = 70 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G +Q++L + G++ + + E G+ IS+ L+ + F + Sbjct: 10 NNLEQLRKAAGFTQQQLSDSAGVSRKSINAIENGIYVPSTVLALKISQTLKCTVDDLFQL 69 Query: 77 S 77 Sbjct: 70 P 70 >gi|119026301|ref|YP_910146.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC 15703] gi|118765885|dbj|BAF40064.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC 15703] Length = 383 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ---QVQKYEKGVNRVGASRLQHI 62 VD + G++I+ +R L M+Q++L + +G++ ++++E G ++ + I Sbjct: 2 VDTDYGQQIKDKRERLHMTQKELADAIGLSKNGDRTIRRWENGESKPTEPEFRQI 56 >gi|42518558|ref|NP_964488.1| hypothetical protein LJ0462 [Lactobacillus johnsonii NCC 533] gi|41582843|gb|AAS08454.1| hypothetical protein LJ_0462 [Lactobacillus johnsonii NCC 533] Length = 82 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG+SQ ++ + +T K E+G++ + AS L I E+ + IS Sbjct: 4 MTIGEALKETRKNLGLSQTEMAYPI-LTKSYYSKIERGIHEINASDLIKILEMHDVDISK 62 Query: 73 F 73 F Sbjct: 63 F 63 >gi|114564571|ref|YP_752085.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] gi|114335864|gb|ABI73246.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] Length = 64 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R ++Q +L + L ++ Q V E G + + + PI F+ Sbjct: 3 NRLKVLRAEQDLTQAQLADLLDVSRQTVNAIETGKFDPSLPLAFKAARLFKLPIESIFED 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|330467124|ref|YP_004404867.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328810095|gb|AEB44267.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] Length = 404 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR---LQHISEVLESP 69 + +G+R+ R G+SQE L +G T + ++K E NR R ++ I++ L+ Sbjct: 1 MTIGQRVAFYRRRRGLSQEVLAGLVGKTQEWLRKVE--TNRADLDRLSVIRAIAKALDVS 58 Query: 70 ISF------FFDVSPTVCSDI 84 + F+ S + Sbjct: 59 LGDLIGAPRLFEWSDDSGRET 79 >gi|325262061|ref|ZP_08128799.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324033515|gb|EGB94792.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 95 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R M+Q L + L + + YE G L I++ E + Sbjct: 7 IGRNIRRLRKERNMTQLHLAKILHLHRATLCSYEIGKRLPDIFILISIADAFEVSLDILV 66 Query: 75 D 75 D Sbjct: 67 D 67 >gi|313884783|ref|ZP_07818537.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619982|gb|EFR31417.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 188 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 ++ R+ MSQE L + + +T Q + KYEKG +L + + Sbjct: 5 NLKRIRLEHDMSQEDLAQVMAVTRQSISKYEKGTAEPSFEKLAILVDYFN 54 >gi|311742480|ref|ZP_07716289.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Aeromicrobium marinum DSM 15272] gi|311314108|gb|EFQ84016.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Aeromicrobium marinum DSM 15272] Length = 511 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G IR R G++Q +L L + V + EKG + L I + L+ Sbjct: 11 IGTLIRDARQHSGLTQAQLATELSTSQSAVNRIEKGQQNLTLDMLARIGKALD 63 >gi|302875737|ref|YP_003844370.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307689168|ref|ZP_07631614.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578594|gb|ADL52606.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 434 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R G + + L IT Q+ E G + L++++ L + + Sbjct: 6 LGEKIKRLRKEKGFTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANTLHCTVEYLM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I N+ + Sbjct: 65 ESEETQAEKICIYYENIAE 83 >gi|206561550|ref|YP_002232315.1| putative phage-related regulator [Burkholderia cenocepacia J2315] gi|198037592|emb|CAR53530.1| putative phage-related regulator [Burkholderia cenocepacia J2315] Length = 106 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ LG++Q +L G+ +YEKG+ R + L I+ + + Sbjct: 7 RLKRERLRLGLNQTELAALGGVQKHAQFQYEKGMRRPNSDYLSAIALA-GVDVWYVLTGE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + E+ V F + D + R+ I+ L+ +I Sbjct: 66 EGARLENPDEQRIVSGF--------------RALDARKREVILALIEAI 100 >gi|154687569|ref|YP_001422730.1| Slr [Bacillus amyloliquefaciens FZB42] gi|308175181|ref|YP_003921886.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens DSM 7] gi|154353420|gb|ABS75499.1| Slr [Bacillus amyloliquefaciens FZB42] gi|307608045|emb|CBI44416.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens DSM 7] gi|328555152|gb|AEB25644.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens TA208] gi|328913510|gb|AEB65106.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens LL3] Length = 151 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 +G+ IRL R G S +L G++ + K E+GV+ L+ +S L+ ++ Sbjct: 2 IGRIIRLYRRRKGYSINQLAVEAGVSKSYLSKIERGVHSNPSIQFLKKVSATLQVDLTEL 61 Query: 74 FDVSPTVCSDISSEEN 89 FD + +E+ Sbjct: 62 FDAETMLHHMGDTEDE 77 >gi|193067087|ref|ZP_03048056.1| transcriptional regulator PuuR [Escherichia coli E110019] gi|192959677|gb|EDV90111.1| transcriptional regulator PuuR [Escherichia coli E110019] Length = 185 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R G+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMD 93 + + ++++++ Sbjct: 69 EPEKPDEPQVVINQDDLIE 87 >gi|333004623|gb|EGK24147.1| helix-turn-helix family protein [Shigella flexneri VA-6] Length = 185 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R G+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMD 93 + + ++++++ Sbjct: 69 EPEKPDEPQVVINQDDLIE 87 >gi|326332010|ref|ZP_08198295.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium Broad-1] gi|325950148|gb|EGD42203.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium Broad-1] Length = 147 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 30/55 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+ ++ +R+ MS +L + G++ + + E+G+ + A LQ I++ L Sbjct: 13 LGEYLKEQRISAEMSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIAKALRIS 67 >gi|313669611|ref|YP_004050035.1| xre family transcriptional regulator [Bacillus cereus VPC1401] gi|313191874|emb|CBW44171.1| xre family transcriptional regulator [Bacillus cereus VPC1401] Length = 296 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G I+ R+ +SQ +L + + Q+ K EKGV + L +SE L + Sbjct: 5 NLGITIKELRIKKKISQSELCHGI-CSQSQISKIEKGVIYPSSVLLYQLSERLGVDPNSI 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|307250998|ref|ZP_07532924.1| hypothetical protein appser4_17620 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857026|gb|EFM89156.1| hypothetical protein appser4_17620 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 137 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + ++IR R +SQE + + LG++ K E+G R RL+ ISE I Sbjct: 1 MKINEKIRHLRETHQLSQEVMADKLGMSVTGYAKIERGEVRSNLPRLEQISEAFNMDI 58 >gi|302865716|ref|YP_003834353.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302568575|gb|ADL44777.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] Length = 404 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR---LQHISEVLESP 69 + +G+R+ R G+SQE L +G T + ++K E NR R ++ I++ L+ Sbjct: 1 MTIGQRVAFYRRRRGLSQEVLAGLVGKTQEWLRKVE--TNRADLDRLSVIRAIAKALDVS 58 Query: 70 ISF------FFDVSPTVCSDI 84 + F+ S + Sbjct: 59 LGDLIGAPSLFEWSDDSGRET 79 >gi|182437780|ref|YP_001825499.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778414|ref|ZP_08237679.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178466296|dbj|BAG20816.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658747|gb|EGE43593.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 162 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L Sbjct: 8 NLGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67 Query: 74 F 74 + Sbjct: 68 Y 68 >gi|149276297|ref|ZP_01882441.1| transcriptional regulator [Pedobacter sp. BAL39] gi|149232817|gb|EDM38192.1| transcriptional regulator [Pedobacter sp. BAL39] Length = 258 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+ ++ R G +Q++ + +GI + YE+ L+ I+E + I F Sbjct: 3 NISANLKYLRKKKGHTQQQFADAMGIKRSLIGAYEEDRAEPKYDLLKKIAEYFDLTIDEF 62 >gi|150400256|ref|YP_001324023.1| XRE family transcriptional regulator [Methanococcus vannielii SB] gi|150012959|gb|ABR55411.1| transcriptional regulator, XRE family [Methanococcus vannielii SB] Length = 73 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R + ++QE L + L +T Q + E+ I+EV I F Sbjct: 3 NRIKILRAVHNLTQEMLAKKLNVTRQTIIAIEREKYDPSLELAFKIAEVFNVKIEDIF 60 >gi|15801869|ref|NP_287889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 EDL933] gi|15831130|ref|NP_309903.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. Sakai] gi|168749060|ref|ZP_02774082.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4113] gi|168755982|ref|ZP_02780989.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4401] gi|168762686|ref|ZP_02787693.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4501] gi|168769383|ref|ZP_02794390.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4486] gi|168775126|ref|ZP_02800133.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4196] gi|168782830|ref|ZP_02807837.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4076] gi|168788374|ref|ZP_02813381.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC869] gi|168799611|ref|ZP_02824618.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC508] gi|208811113|ref|ZP_03252946.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4206] gi|208815007|ref|ZP_03256186.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4045] gi|208820275|ref|ZP_03260595.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4042] gi|209400310|ref|YP_002270360.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4115] gi|217329459|ref|ZP_03445539.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. TW14588] gi|254792894|ref|YP_003077731.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. TW14359] gi|261224290|ref|ZP_05938571.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. FRIK2000] gi|261257454|ref|ZP_05949987.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. FRIK966] gi|291282394|ref|YP_003499212.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|12515475|gb|AAG56505.1|AE005376_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361341|dbj|BAB35299.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187769283|gb|EDU33127.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4196] gi|188016620|gb|EDU54742.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4113] gi|188999714|gb|EDU68700.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4076] gi|189356802|gb|EDU75221.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4401] gi|189361581|gb|EDU80000.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4486] gi|189367033|gb|EDU85449.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4501] gi|189371817|gb|EDU90233.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC869] gi|189377991|gb|EDU96407.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC508] gi|208724619|gb|EDZ74327.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4206] gi|208731655|gb|EDZ80343.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4045] gi|208740398|gb|EDZ88080.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4042] gi|209161710|gb|ACI39143.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4115] gi|209771738|gb|ACI84181.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771740|gb|ACI84182.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771742|gb|ACI84183.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771744|gb|ACI84184.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771746|gb|ACI84185.1| hypothetical protein ECs1876 [Escherichia coli] gi|217317898|gb|EEC26326.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. TW14588] gi|254592294|gb|ACT71655.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. TW14359] gi|290762267|gb|ADD56228.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|320189942|gb|EFW64594.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. EC1212] gi|320637202|gb|EFX07028.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. G5101] gi|320642569|gb|EFX11817.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H- str. 493-89] gi|320647922|gb|EFX16630.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H- str. H 2687] gi|320653523|gb|EFX21628.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659223|gb|EFX26812.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O55:H7 str. USDA 5905] gi|320664016|gb|EFX31203.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. LSU-61] gi|326341032|gb|EGD64825.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. 1125] gi|326343272|gb|EGD67039.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. 1044] Length = 185 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R G+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMD 93 + + ++++++ Sbjct: 69 EPEKPDEPQVVINQDDLIE 87 >gi|320322393|gb|EFW78487.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 139 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R+ G++ E + G + K E+ L +SE L + S Sbjct: 21 MNIGAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSE 80 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + V+ SD SS + + + + R+F + + R+ IE ++ + S+ Sbjct: 81 LYAVA-ESGSDNSSGAASEPSPEQGNEVILVRRHFQALT-PRNRKLAIEFLKLLGQSQDD 138 >gi|315649329|ref|ZP_07902418.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275317|gb|EFU38686.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 139 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESP 69 +D G ++ R G S +L I+ Q+ + E G+ + L+ I++ LE P Sbjct: 1 MDHIFGTYLKEIREDKGWSINQLAHAADISGSQISRIENGLRGIPKPQTLRKIADALEIP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTP 98 + + + +D + ++ +T Sbjct: 61 YEELMNKAGYLPTDAAHQDEISAPAWATS 89 >gi|304394918|ref|ZP_07376802.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357171|gb|EFM21534.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 200 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ V + I+ R +S + L GI+ + + EKG + L ++ L Sbjct: 17 SVNQAVSESIKRWRKSQKLSLDALSHRAGISKGMLVEIEKGAANPSIAILCKVAAALGVS 76 Query: 70 IS 71 ++ Sbjct: 77 VA 78 >gi|256848201|ref|ZP_05553644.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256714799|gb|EEU29777.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 76 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G + RR LGM QEKL E ++ + K E+G + A LQ +++ L + Sbjct: 4 IGINVASRRHELGMIQEKLAELSDLSINFISKVERGAATDIKAGTLQSLAKALNVSMDEL 63 Query: 74 FDV 76 + Sbjct: 64 MNG 66 >gi|257055531|ref|YP_003133363.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256585403|gb|ACU96536.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 184 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R RR G+S +L GI + + E G + +S L S Sbjct: 16 RERRKA-GLSLAELARRAGIAKSTLSQLESGSGNPSVETIWALSTALGVSFS 66 >gi|239631010|ref|ZP_04674041.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065331|ref|YP_003787354.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|239527293|gb|EEQ66294.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437738|gb|ADK17504.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 297 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I R GMSQ +L E + ++ Q+ K+E+ + ++ + + E L + F Sbjct: 4 IGELINHFRENKGMSQAELSEGI-LSKAQLSKFERDLTKISVDKFLALLERLHVTFTEF 61 >gi|157376991|ref|YP_001475591.1| hypothetical protein Ssed_3859 [Shewanella sediminis HAW-EB3] gi|157319365|gb|ABV38463.1| hypothetical protein Ssed_3859 [Shewanella sediminis HAW-EB3] Length = 233 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G SQ +L E GI + K E + + + L Sbjct: 1 MTLGNQIKHFRNERGYSQPELAELAGIEQSYLSKLENDKSVPSNDIFRQLLSALSLTTQE 60 Query: 73 FFDVSPT 79 F D T Sbjct: 61 FVDSLDT 67 >gi|146329855|ref|YP_001209677.1| regulatory protein RegA2 [Dichelobacter nodosus VCS1703A] gi|146233325|gb|ABQ14303.1| regulatory protein RegA2 [Dichelobacter nodosus VCS1703A] Length = 305 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++ N ++++ +++ R + +SQ++L E +G + +QK E G+ + LQ ++ Sbjct: 65 QRRTNNKSEVSLASNVKILRELNNLSQDQLAEKIGKSQAAIQKIEAGLT-LRPRFLQDLA 123 Query: 64 EVLESP 69 L Sbjct: 124 NALGVS 129 >gi|120436979|ref|YP_862665.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117579129|emb|CAL67598.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 252 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 11/87 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R + +SQ+ E + + YE+G + + I+ PI Sbjct: 5 GKNIRKIRSVKSLSQQSFAEIFDLKRGTLGAYEEGRSEPKIETIIKIANHFSIPI----- 59 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 DI +EE V + L+ Sbjct: 60 ------GDILTEELTVNQLLKFRGDLE 80 >gi|10956667|ref|NP_066803.1| putative repressor protein [Rhodococcus equi] gi|31983897|ref|NP_858505.1| repressor protein [Rhodococcus equi] gi|197313525|ref|YP_002149570.1| putative helix turn helix protein [Rhodococcus equi] gi|197313592|ref|YP_002149636.1| putative helix turn helix protein [Rhodococcus equi] gi|10657914|gb|AAG21753.1| putative repressor protein [Rhodococcus equi] gi|10801105|dbj|BAB16659.1| Putative repressor protein (trbA) [Rhodococcus equi] gi|197092567|emb|CAQ30306.1| putative helix turn helix protein [Rhodococcus equi] gi|197092634|emb|CAQ30377.1| putative helix turn helix protein [Rhodococcus equi] gi|297718607|gb|ADI50222.1| putative helix-turn-helix protein [Rhodococcus equi] Length = 148 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R++ R G+S+ LG G+ + ++++E G + L ++EVL + Sbjct: 12 ARLKELRGEKGLSRSDLGRLSGVPYNTIRRWETGNSAPAPDLLARVAEVLGVDVD 66 >gi|16265194|ref|NP_437986.1| hypothetical protein SM_b20754 [Sinorhizobium meliloti 1021] gi|15141334|emb|CAC49846.1| probable transcriptional regulator [Sinorhizobium meliloti 1021] Length = 491 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+++R R ++Q + E +GI+ + + E V A+ L ++E + I+ Sbjct: 25 LYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 83 >gi|330888348|gb|EGH21009.1| peptidase [Pseudomonas syringae pv. mori str. 301020] Length = 233 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L E GI V + E+G+ R L + + + + Sbjct: 26 RLKQARKHARLTQAELAERSGIKQASVSEIERGLTRTS-GYLVKFATICRVDPVWLSEGV 84 Query: 78 PTVCSDISSEENNVMD 93 ++ S + ++D Sbjct: 85 GSMISIGAPSNVAMID 100 >gi|303245781|ref|ZP_07332064.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302493044|gb|EFL52909.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 124 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +R+ R GM+ +++ + G+T + + E+G + LQ ++E L I Sbjct: 68 VRVLRSHRGMTLQQVADICGVTNAHISQIERGKRCMSTELLQKMAEALRVDI 119 >gi|296186453|ref|ZP_06854856.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|296048900|gb|EFG88331.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 62 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 R+++ R L +SQ++L G++ Q + E G A +++ L Sbjct: 9 NRLKVARAELNISQQQLANMAGVSRQTISSIETGQYCPTAKLALILAKCL 58 >gi|291532703|emb|CBL05816.1| Helix-turn-helix [Megamonas hypermegale ART12/1] Length = 80 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPI 70 +G +I R + +QE+L I+ + + E+GV + + S L I++ LE + Sbjct: 15 RQIGAKIMYFRKMKKYTQEELAFRASISASYLSRIERGVYKKGLPISTLMKIAKALEVEL 74 Query: 71 SFFFD 75 S F+ Sbjct: 75 SAIFE 79 >gi|312200727|ref|YP_004020788.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311232063|gb|ADP84918.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 397 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPISF 72 + ++R R+ G++Q++ + LG V+K+E G + S L I++VL+ + Sbjct: 6 IAAQVRTWRVRRGLTQQQFADALGRHVTWVKKFEAGDRQADPRLSLLVQIAQVLDVTLDV 65 Query: 73 FFDVSPTVCSDISSE 87 S T +S Sbjct: 66 LLGQSDTAAGSRASA 80 >gi|242277632|ref|YP_002989761.1| XRE family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242120526|gb|ACS78222.1| transcriptional regulator, XRE family [Desulfovibrio salexigens DSM 2638] Length = 185 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+ R + MS E+L E +G+T ++ +YE G + S L ++ + ++ Sbjct: 8 KEIAPRLAGLRDAMDMSVEELAEKVGVTPERAAQYESGTVEIPVSYLMDVAHLCGVSLTV 67 Query: 73 FFDVSPTVCSD 83 S ++ Sbjct: 68 LISGSEAHLTN 78 >gi|254169279|ref|ZP_04876111.1| CBS domain pair protein [Aciduliprofundum boonei T469] gi|289596725|ref|YP_003483421.1| transcriptional regulator, XRE family [Aciduliprofundum boonei T469] gi|197621756|gb|EDY34339.1| CBS domain pair protein [Aciduliprofundum boonei T469] gi|289534512|gb|ADD08859.1| transcriptional regulator, XRE family [Aciduliprofundum boonei T469] Length = 184 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 I+ RR LG SQ++L + G++ + K EKG + I L+ Sbjct: 8 IKERRRRLGWSQKELAKRSGVSQSAITKIEKGDMNPSYTLAVKIFNALD 56 >gi|153938571|ref|YP_001391627.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934467|gb|ABS39965.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295319660|gb|ADG00038.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 80 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R ++Q+++ + L IT V YE G+ + L IS+ + + Sbjct: 6 RLKGLREDRDLTQDQIADVLSITRSAVANYENGIREPDMALLVKISDYFNVSLDYL 61 >gi|146305038|ref|YP_001192354.1| XRE family transcriptional regulator [Metallosphaera sedula DSM 5348] gi|145703288|gb|ABP96430.1| transcriptional regulator, XRE family [Metallosphaera sedula DSM 5348] Length = 184 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IR R + G++Q +L +G++ + K EKG S ++ I + L Sbjct: 8 IRKMREMAGLTQTELARRVGVSQSLIAKIEKGKIDPKLSVVRKILDEL 55 >gi|314922041|gb|EFS85872.1| cupin domain protein [Propionibacterium acnes HL001PA1] gi|314965926|gb|EFT10025.1| cupin domain protein [Propionibacterium acnes HL082PA2] gi|314980669|gb|EFT24763.1| cupin domain protein [Propionibacterium acnes HL110PA3] gi|315091025|gb|EFT63001.1| cupin domain protein [Propionibacterium acnes HL110PA4] gi|315095153|gb|EFT67129.1| cupin domain protein [Propionibacterium acnes HL060PA1] gi|315105385|gb|EFT77361.1| cupin domain protein [Propionibacterium acnes HL050PA2] gi|327328782|gb|EGE70542.1| putative Helix-turn-helix domain protein [Propionibacterium acnes HL103PA1] Length = 197 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P+ +G R++ +RM + ++L G++ + + E+G L +S+ L Sbjct: 10 PLAHAIGARVKQQRMARRWTLDQLARYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGV 68 >gi|282854487|ref|ZP_06263823.1| cupin domain protein [Propionibacterium acnes J139] gi|282582348|gb|EFB87729.1| cupin domain protein [Propionibacterium acnes J139] Length = 258 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P+ +G R++ +RM + ++L G++ + + E+G L +S+ L Sbjct: 71 PLAHAIGARVKQQRMARRWTLDQLARYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGV 129 >gi|258539032|ref|YP_003173531.1| phage-related Cro-like protein [Lactobacillus rhamnosus Lc 705] gi|257150708|emb|CAR89680.1| Phage-related Cro-like protein [Lactobacillus rhamnosus Lc 705] Length = 80 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 IP V + + +R R+ G+SQ + +G+T ++++EK + + ++ IS++ Sbjct: 3 IPEKVPVYLKHTLRDLRVRKGLSQSDAAKMMGVTEPTLRRWEKDSSDLTMQQIWKISKIY 62 Query: 67 ESPISFFF 74 P + F Sbjct: 63 SIPQDYIF 70 >gi|271967432|ref|YP_003341628.1| hypothetical protein Sros_6155 [Streptosporangium roseum DSM 43021] gi|270510607|gb|ACZ88885.1| hypothetical protein Sros_6155 [Streptosporangium roseum DSM 43021] Length = 225 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P +G+RI RR LGMS+E+L E I + E+ G S + Sbjct: 1 MTEHISAPGD----LGRRIAHRRKSLGMSREQLAERARIDPGYLGYLEENAASPGTSTVN 56 Query: 61 HISEVLESP 69 ++ L + Sbjct: 57 QLAAALGTS 65 >gi|229551178|ref|ZP_04439903.1| possible repressor [Lactobacillus rhamnosus LMS2-1] gi|229315470|gb|EEN81443.1| possible repressor [Lactobacillus rhamnosus LMS2-1] Length = 203 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGIT---FQQVQKYEKGVNRVGASRLQHISE 64 PN +++G+RI+ R+ G + E+ +G+T V ++E+G++ A ++ I+ Sbjct: 7 PNSH-LSLGERIKSIRISKGETMEEFALSVGLTSSGKSAVSRWERGLSAPSADTMKKIAN 65 Query: 65 VLESPISFFFDVSPTVCS 82 + F P Sbjct: 66 HGGISVQFLVTGKPAFED 83 >gi|228952164|ref|ZP_04114256.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229189879|ref|ZP_04316889.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228593553|gb|EEK51362.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228807518|gb|EEM54045.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 404 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I++ LE SF Sbjct: 4 LGEKIKTLRKEKKLTQTDLAGS-ELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|206560876|ref|YP_002231641.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036918|emb|CAR52822.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 109 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 32/84 (38%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P P+ I +GKRI+ R SQE L + + E+G+ L +I Sbjct: 9 SVSRPAPISIALGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIETLANIC 68 Query: 64 EVLESPISFFFDVSPTVCSDISSE 87 L ++ F V + E Sbjct: 69 YSLNVTLAELFGPLEGVSLKPTGE 92 >gi|160942938|ref|ZP_02090177.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium prausnitzii M21/2] gi|158445839|gb|EDP22842.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium prausnitzii M21/2] Length = 85 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R M+Q L E G++ Q + EKG + + I ++L+ + F Sbjct: 26 KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILDKTLDELF 82 >gi|160894971|ref|ZP_02075745.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50] gi|156863402|gb|EDO56833.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50] Length = 118 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLH 61 Query: 68 SPIS 71 + Sbjct: 62 ISLD 65 >gi|119489478|ref|ZP_01622239.1| hypothetical protein L8106_27891 [Lyngbya sp. PCC 8106] gi|119454557|gb|EAW35704.1| hypothetical protein L8106_27891 [Lyngbya sp. PCC 8106] Length = 76 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 IR R LG+SQ KLGE LG+ FQ V +E G + + I + LE Sbjct: 12 IRTLRQRLGLSQRKLGEKLGVVFQTVNNWENGRTKPTRMAMMLIKQELE 60 >gi|16119228|ref|NP_395564.1| hypothetical protein SAP028 [Staphylococcus aureus subsp. aureus N315] gi|170780417|ref|YP_001715961.1| hypothetical protein pTZ2162_05 [Staphylococcus aureus] gi|13774167|dbj|BAB43897.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|169264758|dbj|BAG12251.1| hypothetical protein [Staphylococcus aureus] Length = 79 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ +R + SQE+L L ++ Q V K+E N L +S++ + Sbjct: 7 IKEQRELKRWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLIKGD 65 >gi|113971256|ref|YP_735049.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|114048494|ref|YP_739044.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|117921538|ref|YP_870730.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|113885940|gb|ABI39992.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-4] gi|113889936|gb|ABI43987.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-7] gi|117613870|gb|ABK49324.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. ANA-3] Length = 208 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 6/75 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPI 70 ++++G +R R + G+SQ +L + G+T + EK S L+ +VL P+ Sbjct: 26 NLDIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLK---KVLSGIPM 82 Query: 71 S--FFFDVSPTVCSD 83 S FF + ++ S+ Sbjct: 83 SLVDFFSIEASIESE 97 >gi|150390882|ref|YP_001320931.1| helix-turn-helix domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950744|gb|ABR49272.1| helix-turn-helix domain protein [Alkaliphilus metalliredigens QYMF] Length = 131 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + + +++ +I R+ ++Q++L E L ++ + K E G +L IS+ L Sbjct: 30 DDILVDISLKIINYRIDQEITQKQLAEKLKVSQAMISKLESGEYNPTIGQLWKISKKLG 88 >gi|329897117|ref|ZP_08271861.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] gi|328921409|gb|EGG28799.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] Length = 222 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++PNP+ G+R+R R + + + GI+ + K E G + S + + Sbjct: 16 EADRLPNPI----GRRLRQLRKEQDWTLADVSKRTGISVGTLSKLEHGKTDLNFSSVNKL 71 Query: 63 SEVLESPISFFFDVSPTVCS 82 + L ++ + S + Sbjct: 72 ATGLGLAVTDLTNPSSHMMG 91 >gi|309776192|ref|ZP_07671183.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308916143|gb|EFP61892.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLH 61 Query: 68 SPISFFFDVSPTVCSD 83 + + ++ + Sbjct: 62 ISLDTLINPDISLEDE 77 >gi|308172435|ref|YP_003919140.1| hypothetical protein BAMF_0544 [Bacillus amyloliquefaciens DSM 7] gi|307605299|emb|CBI41670.1| yqaE hypothetical protein B. subtilis [Bacillus amyloliquefaciens DSM 7] Length = 126 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ ++Q+++ + LGI YE+G L I++ + I F Sbjct: 6 RLKELRVGRKLNQQEVADNLGIARTTYASYEQGKREPDHETLVKIADFFDVSIDFLLRGE 65 Query: 78 PT 79 Sbjct: 66 DH 67 >gi|308069208|ref|YP_003870813.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305858487|gb|ADM70275.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 179 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR R +S +++ E G++ + + E + L I+ L+ P++F Sbjct: 3 IGCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALKVPLAFL 61 >gi|254719247|ref|ZP_05181058.1| hypothetical protein Bru83_06846 [Brucella sp. 83/13] gi|265984243|ref|ZP_06096978.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837996|ref|ZP_07470854.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] gi|264662835|gb|EEZ33096.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306406920|gb|EFM63141.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] Length = 478 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 6/89 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTP 98 I P D + V + ++ P Sbjct: 63 IG------PISLGDDDRLLSAVSEALADP 85 >gi|227819136|ref|YP_002823107.1| HTH-type transcriptional regulator y4dL [Sinorhizobium fredii NGR234] gi|227338135|gb|ACP22354.1| putative HTH-type transcriptional regulator y4dL [Sinorhizobium fredii NGR234] Length = 196 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +++R R MSQ +L G+T + + E+G G L ++ L+ I Sbjct: 7 HITQQLRAAREARKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALDLEI 63 >gi|225570223|ref|ZP_03779248.1| hypothetical protein CLOHYLEM_06319 [Clostridium hylemonae DSM 15053] gi|225161018|gb|EEG73637.1| hypothetical protein CLOHYLEM_06319 [Clostridium hylemonae DSM 15053] Length = 215 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + ++ R +S E+ I+ + + E+G S + +S L+ P Sbjct: 34 DLNQLIADNLKEIRRSKALSLEQTSSLTSISKSMLSQLERGEVNPTISTVYKLSLGLKVP 93 Query: 70 ISFFFDVSPTVCSDISSEE 88 ++ F PT S S E Sbjct: 94 VTAFTAPKPTPFSQTSKAE 112 >gi|116695934|ref|YP_841510.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530433|emb|CAJ96780.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 199 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +R+ R + G++ E+L + +T + K E+G++ + ++E L+ + Sbjct: 16 IAERLAALRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLAEALDVTVD 72 >gi|52140306|ref|YP_086523.1| transcriptional regulator, DNA-binding protein [Bacillus cereus E33L] gi|196039476|ref|ZP_03106781.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|301056723|ref|YP_003794934.1| DNA-binding transcriptional regulator [Bacillus anthracis CI] gi|51973775|gb|AAU15325.1| transcriptional regulator, DNA-binding protein [Bacillus cereus E33L] gi|196029636|gb|EDX68238.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|300378892|gb|ADK07796.1| transcriptional regulator, DNA-binding protein [Bacillus cereus biovar anthracis str. CI] gi|324329202|gb|ADY24462.1| DNA-binding transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 63 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NNVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|42518546|ref|NP_964476.1| hypothetical protein LJ0451 [Lactobacillus johnsonii NCC 533] gi|41582831|gb|AAS08442.1| hypothetical protein LJ_0451 [Lactobacillus johnsonii NCC 533] Length = 272 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE--SPI 70 + +G+ ++ R LG++QE++ + + I+ K E+G+ + L I +L+ I Sbjct: 1 MKIGQALKEERQKLGLTQEQMIKGI-ISKGHYSKIERGLESISIDTLFRI--ILKHHIDI 57 Query: 71 SFFFD 75 S FF+ Sbjct: 58 SDFFN 62 >gi|116493755|ref|YP_805489.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116103905|gb|ABJ69047.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 297 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I R GMSQ +L E + ++ Q+ K+E+ + ++ + + E L + F Sbjct: 4 IGELINHFRENKGMSQAELSEGI-LSKAQLSKFERDLTKISVDKFLALLERLHVTFTEF 61 >gi|309806794|ref|ZP_07700783.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|308166768|gb|EFO68958.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] Length = 72 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 30/54 (55%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ R+ G++Q + + L + FQ + KYE +++ L+ + + + P+++ Sbjct: 5 LKAARVNKGLTQREAAKYLKVNFQTISKYEIDSSKIPMKLLKDMCSLYKIPMNY 58 >gi|307323870|ref|ZP_07603079.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890319|gb|EFN21296.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 16/111 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + +L E GI+ + + E G + L +++ Sbjct: 16 VGPRLRALRRTRGTTLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKAYGV------ 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG---LQLNR------YFIQIDDVKVR 116 + ++ + V T G + L R + QI + + Sbjct: 70 -QLDELVGAPATGDPRVHPRPFTRHGQTFVPLTRYLGGLHAYKQIMPPRPQ 119 >gi|282865024|ref|ZP_06274077.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559947|gb|EFB65496.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 401 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLES 68 ++ ++G R+R R ++Q++L + G++ ++K E+GV + L++++ L+ Sbjct: 1 MNTSIGDRVRALREFRDITQDQLAQRSGVSVDTIRKLEQGVRESARINTLRNLARALDV 59 >gi|323528440|ref|YP_004230592.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323385442|gb|ADX57532.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 315 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 2/104 (1%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G P +VG +R R MSQ L I+ + + E G + H+ Sbjct: 37 GAPSAPPTASRSVGDLLREWRQRRRMSQLLLAAEADISTRHLSFVESGRAMPSREMVMHL 96 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMD--FISTPDGLQLN 104 +E L+ P+ + E + D + + ++L Sbjct: 97 AERLDVPLRARNALLIAAGYAPLFRERPLADPQLSAAREAVELV 140 >gi|206970675|ref|ZP_03231627.1| DNA-binding protein [Bacillus cereus AH1134] gi|229178189|ref|ZP_04305560.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|206734311|gb|EDZ51481.1| DNA-binding protein [Bacillus cereus AH1134] gi|228605319|gb|EEK62769.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] Length = 404 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++I+ R ++Q +L +G +T + + E G LQ+I+E LE +SF Sbjct: 4 LGEKIKTLRKEKKLTQTEL---VGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSF 60 Query: 73 FFDVSPTVCSDI 84 + ++ Sbjct: 61 LLEEDEGEIVEL 72 >gi|217975711|ref|YP_002360310.1| putative phage repressor [Shewanella baltica OS223] gi|217501061|gb|ACK48948.1| putative phage repressor [Shewanella baltica OS223] Length = 231 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 24/118 (20%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R+ LG SQE+ G +G+T + ++E G +R + I +++E+ F++ Sbjct: 25 RNLKQLRIDLGFSQEEFGRRIGVTKSTISQWEAGK---SQARRKFIKKIIET-----FEL 76 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID---DVKV--------RQKIIELV 123 + EE NV S + F +I DVKV R+++ EL+ Sbjct: 77 EDNYFDIVDREEANVDSCKSNCES-----SFKRIPFYSDVKVAAGSGYCNREEVYELI 129 >gi|115378362|ref|ZP_01465526.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|310818241|ref|YP_003950599.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115364638|gb|EAU63709.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309391313|gb|ADO68772.1| Transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 168 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ IR R LG++QE++ E + +T + + E+G R I VL + Sbjct: 7 RTLGRNIRQARHRLGLTQEQMAERINMTPEVYGRMERGNLVPRLERFVVICRVLGETPNR 66 Query: 73 FFDVSPTVCSDISSEENN 90 +D + E Sbjct: 67 LISSREPATADEETSEAP 84 Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G +R R LG++Q ++ E + + + E+G R I +VL Sbjct: 96 RRLGANMREARKRLGLTQVEMAERIRMPVDLYGRMERGETLPRLDRFVTICQVLG 150 >gi|111225926|ref|YP_716720.1| hypothetical protein FRAAL6593 [Frankia alni ACN14a] gi|111153458|emb|CAJ65216.1| hypothetical protein FRAAL6593 [Frankia alni ACN14a] Length = 375 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G + R M+ + L +GI+ + K E G+ R + ++ I+ L++P Sbjct: 33 LGVELAQLRHARAMTGQALASSVGISQSTISKIENGLLRPNPADVERIARTLQAPP 88 >gi|146302525|ref|YP_001197116.1| helix-turn-helix domain-containing protein [Flavobacterium johnsoniae UW101] gi|146156943|gb|ABQ07797.1| helix-turn-helix domain protein [Flavobacterium johnsoniae UW101] Length = 117 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 33/64 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ +R+ +QE++ LG+T Q + E G+ ++ S ++++L + + ++ Sbjct: 4 QKLITKRIEKNKTQEEIAHLLGMTQSQYSRRESGITKITKSEWDSLAKILGTNMEAIYEP 63 Query: 77 SPTV 80 + Sbjct: 64 EDGI 67 >gi|54307847|ref|YP_128867.1| transcriptional regulator [Photobacterium profundum SS9] gi|46912273|emb|CAG19065.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 230 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ I G+SQ++LGE LG+ + + G + L+ I+ L + I + Sbjct: 23 ERIKQLAKIQGISQKQLGESLGLQQGTMSRKLSGKYGIEVRELERIAVTLNTSIGYLLTG 82 Query: 77 SPTVCSDISSE 87 + ++ Sbjct: 83 QIDTSTQATTA 93 >gi|88810779|ref|ZP_01126036.1| transcriptional regulator, XRE family protein [Nitrococcus mobilis Nb-231] gi|88792409|gb|EAR23519.1| transcriptional regulator, XRE family protein [Nitrococcus mobilis Nb-231] Length = 128 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 IR+ R G++Q L GIT V + E G + L+ ++ L I Sbjct: 68 IRVWRQYRGVTQAALANAAGITAAYVSQLEAGKRQPSVEVLRAMARKLSVDIDDL 122 >gi|329936275|ref|ZP_08286068.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] gi|329304385|gb|EGG48265.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] Length = 275 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ + + LGI QV E G + V RL+ I+ + Sbjct: 6 LGAELRKLRERAGLTSTQAAQLLGIKQNQVSNMEAGRHGVSPDRLRTIACHYDCSDKALV 65 Query: 75 DVSPTVCSD 83 + T+ D Sbjct: 66 EALATMTPD 74 >gi|326384730|ref|ZP_08206407.1| helix-turn-helix domain protein [Gordonia neofelifaecis NRRL B-59395] gi|326196538|gb|EGD53735.1| helix-turn-helix domain protein [Gordonia neofelifaecis NRRL B-59395] Length = 265 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 45/100 (45%), Gaps = 4/100 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R +SQ +L G++ + + E G +R ++ ++ L+ P+ Sbjct: 10 IGPQLRRWRQHRQLSQLQLSNRAGVSTRHLSWVENGRSRPTRDMIERLAGHLDVPLR--- 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + + S + + D +S+P+ ++ + + + Sbjct: 67 ERNQLLLSGGFAPAYSCSD-LSSPELFAVSSALQALLEAQ 105 >gi|315640521|ref|ZP_07895629.1| DNA-binding protein [Enterococcus italicus DSM 15952] gi|315483725|gb|EFU74213.1| DNA-binding protein [Enterococcus italicus DSM 15952] Length = 209 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R +G +QE++ L ++ Q + +E + S L ++S+ + Sbjct: 1 MKIGEQLKRARSQIGKTQEEVANALHVSRQTISSWENKRSYPDISSLLNLSDYYNLSLDR 60 Query: 73 FFDVSPTVCSDISSEEN 89 + +I E Sbjct: 61 LLKEDTGMIEEIKRNEQ 77 >gi|307320352|ref|ZP_07599770.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306894074|gb|EFN24842.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 472 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+++R R ++Q + E +GI+ + + E V A+ L ++E + I+ Sbjct: 6 LYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 64 >gi|302870397|ref|YP_003839034.1| putative DNA-binding protein [Micromonospora aurantiaca ATCC 27029] gi|302573256|gb|ADL49458.1| putative DNA-binding protein [Micromonospora aurantiaca ATCC 27029] Length = 444 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 11/100 (11%) Query: 12 DINVGKRIRLRRMI-----LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D ++G+ +R R + Q + GIT Q+ + E G V RL H + VL Sbjct: 59 DRHLGRVVRAYRHHPYHGRQPLPQTTVAGWFGITQAQLSRIENGPEVVHLDRLAHWARVL 118 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 P + P D + V G QL R Sbjct: 119 RIPAHTLWFRLPAAPGDTPLPADVV------EVGPQLIRA 152 >gi|296120086|ref|ZP_06838640.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] gi|295967240|gb|EFG80511.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] Length = 182 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPI 70 + +R R G++Q+ L E G++ QV E+ N S + ++ LE P Sbjct: 19 QNLRKIRRSRGVTQQALAEIAGLSRTQVCNLERNENNSGTSADPALSTVYKLALALEVPP 78 >gi|257892128|ref|ZP_05671781.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257828488|gb|EEV55114.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] Length = 173 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISE 64 PNPV+ GKRI+ R GM+ E+ + +G Q+ + +E+G + RL I+E Sbjct: 40 KPNPVET--GKRIKSIRSNFGMTMEQFADLIG-NAQKGNINNWERGFSLPNKERLIKIAE 96 Query: 65 VLESPISF 72 + I + Sbjct: 97 LSNKTIDW 104 >gi|228902066|ref|ZP_04066230.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis IBL 4222] gi|228857492|gb|EEN01988.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis IBL 4222] Length = 68 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK++ L R G SQ +LGE L + V E G + ++L IS + + I F Sbjct: 6 GKKLYLLRKNRGFSQRELGELLNCSHSLVNLMENGKLQPTTAKLLGISSIFKVSIDELF 64 >gi|170754290|ref|YP_001780243.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119502|gb|ACA43338.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 136 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLD 59 >gi|158425505|ref|YP_001526797.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332394|dbj|BAF89879.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 72 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ R G++QE + G + Q + E+G L +++ L Sbjct: 5 KLVGRNFARLRQEKGLTQEDVQTRSGFSQQYISGLERGRRNPTVITLYELAQALGVS 61 >gi|186470871|ref|YP_001862189.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197180|gb|ACC75143.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 234 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R RM+ ++ + L E G + + K E G + L I+ L++ I+ Sbjct: 45 LGTRLRHARMVQQLTLKALAEQAGCSESLLSKVEGGHATPSLATLHRIALALDTNIAALV 104 Query: 75 DVSPTVCSDI 84 + I Sbjct: 105 SGPVATVTPI 114 >gi|255973582|ref|ZP_05424168.1| CylR2 [Enterococcus faecalis T2] gi|256959429|ref|ZP_05563600.1| CylR2 [Enterococcus faecalis DS5] gi|256960245|ref|ZP_05564416.1| CylR2 [Enterococcus faecalis Merz96] gi|257080295|ref|ZP_05574656.1| CylR2 [Enterococcus faecalis JH1] gi|257423074|ref|ZP_05600064.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|307277414|ref|ZP_07558507.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307285036|ref|ZP_07565186.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307292300|ref|ZP_07572161.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312904701|ref|ZP_07763852.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|55670390|pdb|1UTX|A Chain A, Regulation Of Cytolysin Expression By Enterococcus Faecalis: Role Of Cylr2 gi|55670391|pdb|1UTX|B Chain B, Regulation Of Cytolysin Expression By Enterococcus Faecalis: Role Of Cylr2 gi|146386808|pdb|2GZU|A Chain A, High-Resolution Structure Determination Of The Cylr2 Homodimer Using Intermonomer Distances From Paramagnetic Relaxation Enhancement And Nmr Dipolar Couplings gi|146386809|pdb|2GZU|B Chain B, High-Resolution Structure Determination Of The Cylr2 Homodimer Using Intermonomer Distances From Paramagnetic Relaxation Enhancement And Nmr Dipolar Couplings gi|322812210|pdb|2XI8|A Chain A, High Resolution Structure Of Native Cylr2 gi|322812211|pdb|2XI8|B Chain B, High Resolution Structure Of Native Cylr2 gi|18139790|gb|AAL60140.1|AF394225_2 CylR2 [Enterococcus faecalis] gi|18104290|gb|AAL59476.1| putative transcription regulator [Enterococcus faecalis] gi|255966454|gb|EET97076.1| CylR2 [Enterococcus faecalis T2] gi|256949925|gb|EEU66557.1| CylR2 [Enterococcus faecalis DS5] gi|256950741|gb|EEU67373.1| CylR2 [Enterococcus faecalis Merz96] gi|256988325|gb|EEU75627.1| CylR2 [Enterococcus faecalis JH1] gi|257164898|gb|EEU94858.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|306496655|gb|EFM66211.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306502937|gb|EFM72197.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306505903|gb|EFM75080.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|310631956|gb|EFQ15239.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315163478|gb|EFU07495.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|329569606|gb|EGG51374.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 66 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++L R +SQ +L L ++ Q + EK I+ L +P+ F Sbjct: 4 NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQW 63 Query: 77 SPT 79 P Sbjct: 64 QPE 66 >gi|146294918|ref|YP_001185342.1| helix-turn-helix domain-containing protein [Shewanella putrefaciens CN-32] gi|145566608|gb|ABP77543.1| helix-turn-helix domain protein [Shewanella putrefaciens CN-32] Length = 68 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I G ++R R G+SQEK+ I + + E+G + + ++E L I Sbjct: 6 IQFGAKLREERKRRGISQEKVALLTEIDRSYMGRIERGEVNITLEKAYQLAEALGCDI 63 >gi|76799152|ref|ZP_00781336.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76799661|ref|ZP_00781770.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76584989|gb|EAO61638.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76585504|gb|EAO62078.1| transcription regulator [Streptococcus agalactiae 18RS21] Length = 97 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 27/53 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I+ R+ G++Q ++ E LG+ Q ++E G ++ ++E+ + + Sbjct: 5 NIKKARLDAGLTQLEVAEKLGVAQAQYARWENGGRNPKDETVEKLAEIFGTSL 57 >gi|322390596|ref|ZP_08064111.1| DNA-binding protein [Streptococcus parasanguinis ATCC 903] gi|321142675|gb|EFX38138.1| DNA-binding protein [Streptococcus parasanguinis ATCC 903] Length = 296 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +GK++R R GM++E L + +T +Q+ + EKG + +L++I+ +L+ Sbjct: 3 DIKSEIGKKLRRLREEKGMTREVLCNDESELTVRQLVRIEKGESLPSLKKLEYIANMLDI 62 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFI 108 P+S D V E ++ T + ++L + Sbjct: 63 PVSNIVDHDKAVLPRRYLELKFLVTHFMTYGDEERIRLKESYF 105 >gi|296327851|ref|ZP_06870387.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154985|gb|EFG95766.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 209 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I V + I+ R +S L + ++ + + E+G S L I+ ++ Sbjct: 31 LNILVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVS 89 >gi|256789090|ref|ZP_05527521.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 190 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 25/75 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + E L G++ + + E+ + I + L I+ D Sbjct: 13 RNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITTLLDW 72 Query: 77 SPTVCSDISSEENNV 91 + + V Sbjct: 73 EQGPAVRVVPADEAV 87 >gi|253689846|ref|YP_003019036.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756424|gb|ACT14500.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 200 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 IR R L +S +L + G+ + + E G+ L ++ L+ +S Sbjct: 30 IRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALDVQVS 82 >gi|298229344|ref|ZP_06963025.1| Tn5251 transcriptional regulator Cro/CI family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255907|ref|ZP_06979493.1| Tn5251 transcriptional regulator Cro/CI family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503697|ref|YP_003725637.1| replication initiation protein [Streptococcus pneumoniae TCH8431/19A] gi|298239292|gb|ADI70423.1| replication initiation protein [Streptococcus pneumoniae TCH8431/19A] Length = 420 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-----ESPIS 71 ++++ +R+ G+SQ +L GIT Q + E G + Q + E L ++P+ Sbjct: 13 QQLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLFEALERFNPDAPLE 72 Query: 72 FFFD 75 FD Sbjct: 73 MLFD 76 >gi|237807907|ref|YP_002892347.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] gi|237500168|gb|ACQ92761.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] Length = 89 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++VG++IR R +G+S+ K E LG+ ++ YE G VG + L ++ Sbjct: 6 VSVGQKIRHIRETMGLSRPKFAELLGVPPTTLKNYELGYREVGGAFLVALA 56 >gi|153812929|ref|ZP_01965597.1| hypothetical protein RUMOBE_03336 [Ruminococcus obeum ATCC 29174] gi|149831007|gb|EDM86097.1| hypothetical protein RUMOBE_03336 [Ruminococcus obeum ATCC 29174] Length = 279 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFDV 76 R+ R +SQ++L + L +T Q+ + E G S + + + Sbjct: 16 RLSNLRKDHDLSQKQLADQLHVTHSQISRIESGETKNPNISIVIDAARFFHVSTDYLL-- 73 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + S + ++ + + + + R + DV + +++E Sbjct: 74 --GITQITSPKSYDISELRLSEEAV--TRLITRRIDVDILNRLLE 114 >gi|254303749|ref|ZP_04971107.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323941|gb|EDK89191.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 182 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I V + I+ R +S L + ++ + + E+G S L I+ ++ Sbjct: 4 LNILVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVS 62 >gi|148556966|ref|YP_001264548.1| helix-turn-helix domain-containing protein [Sphingomonas wittichii RW1] gi|148502156|gb|ABQ70410.1| helix-turn-helix domain protein [Sphingomonas wittichii RW1] Length = 125 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 4/96 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R LG+ Q+++ L I + E G RV A L ++++ +++ Sbjct: 17 RRLGDRLREARKYLGLKQDEVATYLKIPRTALTDIESGQRRVEAIELTRLAKLYRQSVAY 76 Query: 73 FFDVSPTVCS---DISSEENNVMDFISTPDGLQLNR 105 F S D++ V D +ST D +L+R Sbjct: 77 FTGEDEASASLPVDVAHLARRVAD-LSTEDRAELSR 111 >gi|77165129|ref|YP_343654.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254433736|ref|ZP_05047244.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27] gi|76883443|gb|ABA58124.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] gi|207090069|gb|EDZ67340.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27] Length = 76 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 ++VGK I+ R+ G++Q +L + I + K E+ N + L+ I++ L+ + Sbjct: 1 MSVGKNIKGLRIAAGLTQTQLAKEARINQSGLSKIEREENESITLPTLRKIAKALDCSVV 60 Query: 72 FFFDVSP 78 + Sbjct: 61 ALLEDKD 67 >gi|21219819|ref|NP_625598.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289772984|ref|ZP_06532362.1| transcriptional regulatory protein [Streptomyces lividans TK24] gi|14575569|emb|CAC42859.1| putative transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289703183|gb|EFD70612.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 201 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 25/75 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + E L G++ + + E+ + I + L I+ D Sbjct: 24 RNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITTLLDW 83 Query: 77 SPTVCSDISSEENNV 91 + + V Sbjct: 84 EQGPAVRVVPADEAV 98 >gi|99081720|ref|YP_613874.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038000|gb|ABF64612.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 491 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 49/133 (36%), Gaps = 13/133 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R +G++Q+ LG++ + + E V + + +++ ++ Sbjct: 35 LYAGAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTE 94 Query: 73 FFDVSPT----------VCSDISSEENNVMDF-ISTPDGLQLNRYFIQIDDV--KVRQKI 119 + + + D ++ + L R F+ + + +++ Sbjct: 95 LSSGDSERLISDMREAMADPVFADDVPPLADLRLTASNAPALARAFLSLHRAYRQTHERL 154 Query: 120 IELVRSIVSSEKK 132 L ++ ++ + Sbjct: 155 ASLDEALGRADAR 167 >gi|330833783|ref|YP_004402608.1| putative DNA-binding phage protein [Streptococcus suis ST3] gi|329308006|gb|AEB82422.1| putative DNA-binding phage protein [Streptococcus suis ST3] Length = 75 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R+ G + ++ + +G FQ + KYEK + L+ +S++ + F Sbjct: 6 LKACRVNAGYTLRQVAKKVGKNFQTISKYEKDSTIIPFELLKDLSKLYRVKLDDIFLGDS 65 Query: 79 TVCSDISSEE 88 T +++ EE Sbjct: 66 TKKIELTPEE 75 >gi|311069889|ref|YP_003974812.1| putative transcriptional repressor [Bacillus atrophaeus 1942] gi|310870406|gb|ADP33881.1| putative transcriptional repressor [Bacillus atrophaeus 1942] Length = 139 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 38/88 (43%), Gaps = 8/88 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPISFFF 74 G+++R R ++ +L G++ + + E G + + ++ +++ L+ P + Sbjct: 5 GEQLRALRKARHLTVNQLAIYSGVSSATISRIENGKRGIPKPATIRKLADTLKMP----Y 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 + I+ + + + P+G Q Sbjct: 61 ENLMAAAGHITPFPDEIRE---APEGYQ 85 >gi|302520148|ref|ZP_07272490.1| DNA-binding protein [Streptomyces sp. SPB78] gi|333026104|ref|ZP_08454168.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|302429043|gb|EFL00859.1| DNA-binding protein [Streptomyces sp. SPB78] gi|332745956|gb|EGJ76397.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 120 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 37/84 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L + Sbjct: 9 LGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 68 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + +E ++ P Sbjct: 69 VQAGILDERERAEAETRAVLLADP 92 >gi|299142285|ref|ZP_07035418.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella oris C735] gi|298576374|gb|EFI48247.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella oris C735] Length = 104 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 G I+ R ++QE+LGE +GI QV + E G N I+ + Sbjct: 38 GDAIKKARQSCNLTQEQLGERMGIKKAQVSRIEGGKN----LTFSTIARAFK 85 >gi|229551141|ref|ZP_04439866.1| transcription regulator [Lactobacillus rhamnosus LMS2-1] gi|258541073|ref|YP_003175572.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|229315433|gb|EEN81406.1| transcription regulator [Lactobacillus rhamnosus LMS2-1] gi|257152749|emb|CAR91721.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] Length = 393 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R + G ++++L + +G+T Q V +YE L ++ + F Sbjct: 1 MFIGSKLQALRELNGYTRKELSDVIGVTQQAVWQYENDNVMPKIEILNTFQKIFNVEMLF 60 Query: 73 FFDVS 77 S Sbjct: 61 LISGS 65 >gi|167851686|ref|ZP_02477194.1| possible transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] gi|257140690|ref|ZP_05588952.1| XRE family transcriptional regulator [Burkholderia thailandensis E264] Length = 109 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 31/81 (38%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P P+ I +GKRI+ R SQE L I + E+G+ L +I L Sbjct: 12 RPAPISIALGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVETLANICYSL 71 Query: 67 ESPISFFFDVSPTVCSDISSE 87 ++ F V + E Sbjct: 72 NITLAELFAPLDGVSLKPTGE 92 >gi|148381499|ref|YP_001256040.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153933346|ref|YP_001385874.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936871|ref|YP_001389281.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148290983|emb|CAL85119.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152929390|gb|ABS34890.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932785|gb|ABS38284.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 220 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I+ R+ G++Q++L + LG+ + + E G + S + IS+VL I+ Sbjct: 4 VSDKIKEARLKKGLTQKQLAKKLGVAENFINEIESGRKIINESLMNRISKVLGKGIN--- 60 Query: 75 DVSPTVCSDISSEEN 89 D+ + ++S E Sbjct: 61 DIGISFEEEVSLEPK 75 >gi|77163558|ref|YP_342084.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254436424|ref|ZP_05049929.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27] gi|76881872|gb|ABA56554.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] gi|207087958|gb|EDZ65232.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27] Length = 76 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 VGK I+ R+ G++Q +L + I + K E+ N V L+ I++ L+ ++ Sbjct: 3 VGKNIKGLRIAAGLTQTQLAKEARIDQSGLSKIEREENESVTLPTLRKIAKALDCSVAAL 62 Query: 74 FDVSPT 79 + T Sbjct: 63 LENEDT 68 >gi|72160668|ref|YP_288325.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71914400|gb|AAZ54302.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 146 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP + +G +IRL R G+SQ +L + L I+ + E+G+ I VL + Sbjct: 6 NPHWLKLGSQIRLLREAQGLSQAQLSQALNISQAMLSAVERGIRNCKPDLAAQIDHVLNT 65 >gi|126173499|ref|YP_001049648.1| helix-turn-helix domain-containing protein [Shewanella baltica OS155] gi|125996704|gb|ABN60779.1| helix-turn-helix domain protein [Shewanella baltica OS155] Length = 146 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-------ESPISF 72 + R+ + +SQ+ L G++ Q + +YEKG + + + L +P+S+ Sbjct: 58 KFLRLEMNLSQKALAVRFGVSEQTIARYEKGQTEIPRTTDVAL-RTLYMEKIEHNNPVSY 116 Query: 73 FFDVSPTVCS 82 F ++ + Sbjct: 117 FLELLADAEA 126 >gi|299142081|ref|ZP_07035215.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella oris C735] gi|298576543|gb|EFI48415.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella oris C735] Length = 103 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 26/49 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 ++ +R + ++Q++L E +G + + + E+G + + S I+ L Sbjct: 47 LKEQRKMQRLTQQQLAEMIGKKREYISQIERGNSDMQLSTFLQIANALG 95 >gi|253680970|ref|ZP_04861773.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253562819|gb|EES92265.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 195 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L +SQE+L E + +T Q + +E L +S + + Sbjct: 6 QIKKYRTNLNLSQEELAEKVYVTRQTISNWENNKTYPDIRSLLLLSTLFNISLDQLIKGD 65 Query: 78 PTVCSD 83 + Sbjct: 66 IKTMQE 71 >gi|261415442|ref|YP_003249125.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371898|gb|ACX74643.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326318|gb|ADL25519.1| DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 149 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R ++Q+++ E L +T Q V ++E G + L+ IS I+ Sbjct: 9 KLRSNQNLTQDQMAERLHVTRQAVSRWETGETQPNTEMLKVISREFNVSIN 59 >gi|14520583|ref|NP_126058.1| hypothetical protein PAB2104 [Pyrococcus abyssi GE5] gi|24418829|sp|Q9V1R0|Y367_PYRAB RecName: Full=Putative HTH-type transcriptional regulatory protein PYRAB03670 gi|5457799|emb|CAB49289.1| Hypothetical protein, containing helix-turn-helix motif [Pyrococcus abyssi GE5] Length = 316 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE----SPIS 71 GKR++ R G S +L LG++ + +Q+YEKG + V + EV + PI+ Sbjct: 128 GKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDSMVTLEVALRLEEVFDEALVKPIN 187 Query: 72 FF---FDVSPTVCSDISSEENNVMDFI 95 FD ++ E V + + Sbjct: 188 VLKAKFDEISLSSKPETTLEREVFERL 214 >gi|15599272|ref|NP_252766.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107103591|ref|ZP_01367509.1| hypothetical protein PaerPA_01004661 [Pseudomonas aeruginosa PACS2] gi|116052113|ref|YP_789043.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218889643|ref|YP_002438507.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254236965|ref|ZP_04930288.1| hypothetical protein PACG_02989 [Pseudomonas aeruginosa C3719] gi|254242758|ref|ZP_04936080.1| hypothetical protein PA2G_03524 [Pseudomonas aeruginosa 2192] gi|296387366|ref|ZP_06876865.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313109519|ref|ZP_07795473.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9950275|gb|AAG07464.1|AE004823_10 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587334|gb|ABJ13349.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168896|gb|EAZ54407.1| hypothetical protein PACG_02989 [Pseudomonas aeruginosa C3719] gi|126196136|gb|EAZ60199.1| hypothetical protein PA2G_03524 [Pseudomonas aeruginosa 2192] gi|218769866|emb|CAW25626.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310881975|gb|EFQ40569.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 68 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 22/66 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G SQ +L L ++ Q V E G ++ V I FD Sbjct: 3 NRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIFDD 62 Query: 77 SPTVCS 82 Sbjct: 63 REGQLD 68 >gi|306831328|ref|ZP_07464488.1| HTH-type transcriptional regulator rgg [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426564|gb|EFM29676.1| HTH-type transcriptional regulator rgg [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 296 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+GK ++ R G+SQ+++ + I+ Q+ ++E+G++ + A L + E + + F Sbjct: 4 NLGKSFKMLRESKGLSQKEIAGDI-ISIAQLSRFERGISSINAETLYNCLENMNVSVEEF 62 Query: 74 FDV-SPTVCSDISSEENNVMDFISTPDGLQLNRY---FIQIDDVKVRQKIIEL 122 V + + + +N+V + L+L Y + ++ + QK L Sbjct: 63 QCVCRDFLQNQNAIFQNDVAKAFLEKNTLKLREYLAKYQRLTTIAPEQKFYRL 115 >gi|299536621|ref|ZP_07049933.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728105|gb|EFI68668.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 97 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +IR+ R +SQ KL E +T Q + E +S +L +PI F Sbjct: 30 NKIRVYREKNSLSQGKLAELCNVTRQTINAIENNKYDPSLELAFTLSYILSAPIEELF 87 >gi|299137331|ref|ZP_07030513.1| putative phage repressor [Acidobacterium sp. MP5ACTX8] gi|298600736|gb|EFI56892.1| putative phage repressor [Acidobacterium sp. MP5ACTX8] Length = 240 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV---NRVGASRLQHISEVLESPI 70 N G+R + R G +Q L +GI+ + ++E G +++ A L + L + + Sbjct: 3 NFGERFKRIRTAHGYTQRGLASEIGISGAAISQWESGETQPDKIRAEFLDAAAHKLHTTV 62 Query: 71 SFFFDVSPTVCSDIS 85 S S Sbjct: 63 RHLLKGDGVEGSPGS 77 >gi|312195167|ref|YP_004015228.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311226503|gb|ADP79358.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 404 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 10/119 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPIS 71 + +G+RI R G++Q L +G + + K E+G + L +++ L + Sbjct: 1 MTIGERIAFYRRRRGLTQAVLAGLVGRSEDWLSKVERGEREIRRVDLLAEVAKALRVTLG 60 Query: 72 FFFDVSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL---VRSI 126 ++ V D + +P +L+R + II+L VR++ Sbjct: 61 DLLGQPILSEEAFQGDDVPAVRDALMSP--RRLSRVLFSAPEDPP---IIDLQPVVRAV 114 >gi|258517094|ref|YP_003193316.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780799|gb|ACV64693.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 181 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RIR R ++ +L +GI+ + + E+ + L+ I L + Sbjct: 1 MNIGIRIRELRKNSNINITQLAIKVGISRVYLSELERNIKTPPLETLERICSALNITLVD 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|257067633|ref|YP_003153888.1| transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558451|gb|ACU84298.1| transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 186 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R+ G+S +L ++ + + E G R+ +L +++ L++ + + Sbjct: 14 QRLRALRLAQGLSLAELAARAHLSQSTLSRIENGQRRLALDQLVNLARALDTGLDELVEE 73 Query: 77 SPT 79 Sbjct: 74 QEE 76 >gi|229069332|ref|ZP_04202622.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|229078964|ref|ZP_04211516.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228704378|gb|EEL56812.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228713819|gb|EEL65704.1| Transcriptional regulator, Xre [Bacillus cereus F65185] Length = 404 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++I+ R ++Q +L +G +T + + E G LQ+I+E LE +SF Sbjct: 4 LGEKIKTLRKEKKLTQTEL---VGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSF 60 Query: 73 FFDVSPTVCSDI 84 + ++ Sbjct: 61 LLEEDEGEIVEL 72 >gi|238855030|ref|ZP_04645359.1| SOS-response transcriptional repressor [Lactobacillus jensenii 269-3] gi|282934070|ref|ZP_06339350.1| SOS-response transcriptional repressor [Lactobacillus jensenii 208-1] gi|238832401|gb|EEQ24709.1| SOS-response transcriptional repressor [Lactobacillus jensenii 269-3] gi|281301872|gb|EFA94136.1| SOS-response transcriptional repressor [Lactobacillus jensenii 208-1] Length = 225 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 K ++ R +SQ +LGE LG++ Q V +E S + +IS ++ + Sbjct: 16 KALKEYRKKQHISQTELGEKLGVSKQTVSYWESKKKSPKMSAVINISNLIGVSV 69 >gi|224535505|ref|ZP_03676044.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus DSM 14838] gi|224522872|gb|EEF91977.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus DSM 14838] Length = 69 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 26/58 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI R G+SQ KL E I + + E G G L I++ L + F Sbjct: 9 IGKRIAEIRKSKGLSQAKLAELTDIAPGNIARIETGRYSTGIDLLSKIADALGYKLDF 66 >gi|153877010|ref|ZP_02004037.1| hypothetical protein BGP_5257 [Beggiatoa sp. PS] gi|152066527|gb|EDN65964.1| hypothetical protein BGP_5257 [Beggiatoa sp. PS] Length = 74 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G ++ R G+ + ++ LG +Q + ++E G + S ++E + Sbjct: 7 IGNNLKKLRNNRGLGKSEMAGELGTNYQNIGRWEGGQVDMKLSTFIQLAEFFDVS 61 >gi|157412091|ref|YP_001481431.1| hypothetical protein APECO1_O1R78 [Escherichia coli APEC O1] gi|99867116|gb|ABF67761.1| conserved hypothetical protein [Escherichia coli APEC O1] Length = 98 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R G++Q+ L E LG+T Q + E RL + +L ISF Sbjct: 22 RKANGLTQKDLSERLGVTQQTYSRLEANPASASIERLFKVFSILGVKISF 71 >gi|14251161|ref|NP_116529.1| Cro repressor [Lactococcus phage BK5-T] gi|928838|gb|AAA98589.1| Cro repressor [Lactococcus phage BK5-T] gi|26005558|emb|CAC80178.1| cro repressor [Lactococcus phage BK5-T] Length = 79 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R S +++ E +G +Q + YEK + S ++E+ + PI F F Sbjct: 10 KLKAARTNADFSAKEVAEIVGKNYQTILSYEKDSTEIPMSLAIKLAEIYDYPIDFIF 66 >gi|296330427|ref|ZP_06872907.1| putative transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675973|ref|YP_003867645.1| putative transcriptional repressor [Bacillus subtilis subsp. spizizenii str. W23] gi|2702242|gb|AAB91591.1| Orf2 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296152430|gb|EFG93299.1| putative transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414217|gb|ADM39336.1| putative transcriptional repressor [Bacillus subtilis subsp. spizizenii str. W23] Length = 139 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G+++R R ++ +L GI+ + K E G + ++ ++ VL+ P + Sbjct: 5 GQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVP----Y 60 Query: 75 DVSPTVCSDISSEENNVMD 93 + I + + + Sbjct: 61 ENLMAAAGHIRAFPEEIRE 79 >gi|330875430|gb|EGH09579.1| Helix-turn-helix domain protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 372 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++RL R G S ++GE LG+T Q K E +L+ + E+L SFFF Sbjct: 18 KLRLARCASGRSLAEIGELLGVTRQYAHKLEINSI-PNPGQLKQLCEILNVKESFFF 73 >gi|329767341|ref|ZP_08258866.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341] gi|328836030|gb|EGF85721.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341] Length = 218 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ + E LG+T +EKG L+ ++ ++F Sbjct: 5 NRLKSLRAKRKVSQTAVAEYLGVTRAAYNSWEKGKYIPNKKNLEELALYFNVETTYF 61 >gi|307728070|ref|YP_003911283.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307588595|gb|ADN61992.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 105 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 16/114 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 +G++IR R ++ E L ++ + + E + R A +LQ +++ L SF Sbjct: 5 LGEKIRQLRKGKKLTLEALAAQANLSKSYLWELENRESQRPSAEKLQSLADALGVSQSFL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVR-QKIIELVRS 125 + +E R + ++D D K R +KI++ ++S Sbjct: 65 LEDDVEAPEQHHLDEAFY-------------RNYKKLDADAKERLRKILDALKS 105 >gi|282866393|ref|ZP_06275438.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558789|gb|EFB64346.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 406 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI---SEVLES 68 ++ +G+R+ R G+SQE L + +G T + K E NR+ RL I +E L+ Sbjct: 4 NLTIGERVAWYRRRRGLSQEVLADLVGRTTDWLSKAEN--NRIELDRLSVITSLAEALDV 61 Query: 69 PISFF 73 + Sbjct: 62 SLGDL 66 >gi|271502495|ref|YP_003335521.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270346050|gb|ACZ78815.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 156 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R+ SQE+L E ++ + +Q+ E G R L I+ ++ Sbjct: 4 IKSQRLARAWSQEQLAELSALSVRTIQRIENGE-RASLETLSAIAAAFGVNVTTLMPEDS 62 Query: 79 TVCSDISS 86 + S Sbjct: 63 EQAASGDS 70 >gi|229015775|ref|ZP_04172754.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273] gi|228745532|gb|EEL95555.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273] Length = 83 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +V +I R +SQ L + ++ Q + E + ++EVL + + Sbjct: 18 KDVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDK 77 Query: 73 FF 74 F Sbjct: 78 LF 79 >gi|221214621|ref|ZP_03587591.1| helix-turn-helix domain protein [Burkholderia multivorans CGD1] gi|221165511|gb|EED97987.1| helix-turn-helix domain protein [Burkholderia multivorans CGD1] Length = 163 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 13/102 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G R++ RM +G+SQ + G+ Q YE G A+ L ++++ + Sbjct: 2 VEKMIGDRLKEERMRIGLSQAEFAALGGLGKQAQLNYESGTRSPDANYLAALAKI-GVDV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + S + PD L F+Q++D Sbjct: 61 LYVITGERATQSKLP------------PDVADLVDSFLQLND 90 >gi|254385553|ref|ZP_05000879.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194344424|gb|EDX25390.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 126 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 37/85 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ +R +R +S +L E G++ + + E+G+ + A LQ +++ L Sbjct: 8 NLGEYLREQRRQAQLSLRQLAEAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 + + + E ++ P Sbjct: 68 YVQAGILDERDPDEVETRAVILADP 92 >gi|332877082|ref|ZP_08444833.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684972|gb|EGJ57818.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 142 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G IR R+ ++QE+LGE +G+ Q+ K E G + + + + L S Sbjct: 7 NIGSIIRNERIRKRLTQEELGERVGVGKAQISKIESGK-GLTIKTVTKVLDALGISASVV 65 Query: 74 FDVSPTVCSDI 84 P + ++ Sbjct: 66 LKNEPEIDKNV 76 >gi|312864389|ref|ZP_07724622.1| conserved hypothetical protein [Streptococcus downei F0415] gi|311100110|gb|EFQ58321.1| conserved hypothetical protein [Streptococcus downei F0415] Length = 300 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ +R +SQ+ L G +T +Q+Q+ EKG + +L +I+ +LE PIS Sbjct: 7 LGQLIKKKREAKKLSQKNLCGNEEELTVRQLQRIEKGKSLPTLEKLDYIARMLELPISAL 66 Query: 74 FDVSPTVCSD 83 + D Sbjct: 67 LGENDLQIPD 76 >gi|306831004|ref|ZP_07464166.1| MutR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427027|gb|EFM30137.1| MutR family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 288 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++GK + R+ G++ + E GI+ Q+ ++E+G + +RL + E + PI+ Sbjct: 2 KHLGKLFKKYRVSRGLTLRDIAEA-GISTSQLSRFEQGKTDLTITRLALVLEEMNVPIAE 60 Query: 73 FF 74 F Sbjct: 61 FM 62 >gi|288559941|ref|YP_003423427.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288542651|gb|ADC46535.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 326 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R +S + L + ++ + KYE G+ R + E+L + I+ D Sbjct: 130 GNVLKEYREEYNLSLKDLADLAHVSRATMYKYENGMVRANTETAMLLEEILNTKITLDID 189 Query: 76 VSPTVCSDI 84 + DI Sbjct: 190 LFEPYQEDI 198 >gi|312199652|ref|YP_004019713.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311230988|gb|ADP83843.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 501 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 6/111 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPISFFFDVS 77 +R R G++Q++L + LG V K E G + S L+HI+ LE + Sbjct: 24 LRAYRQAHGLTQQQLADQLGFDQSYVSKVESGRRAIHDISTLRHIARHLELAP----EDV 79 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ + R + D R +I L ++ Sbjct: 80 GLAPGTLAERRREPGRDSLSEQATASQRGWRVTRDTLNRNRI-RLAKAAAG 129 >gi|258509913|ref|YP_003172664.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149840|emb|CAR88813.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259651175|dbj|BAI43337.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 393 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R + G ++++L + +G+T Q V +YE L ++ + F Sbjct: 1 MFIGSKLQALRELNGYTRKELSDVIGVTQQAVWQYENDNVMPKIEILNTFQKIFNVEMLF 60 Query: 73 FFDVS 77 S Sbjct: 61 LISGS 65 >gi|237741715|ref|ZP_04572196.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256845043|ref|ZP_05550501.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294785671|ref|ZP_06750959.1| DNA-binding protein [Fusobacterium sp. 3_1_27] gi|229429363|gb|EEO39575.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256718602|gb|EEU32157.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294487385|gb|EFG34747.1| DNA-binding protein [Fusobacterium sp. 3_1_27] Length = 182 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I V + I+ R +S L + ++ + + E+G S L I+ ++ Sbjct: 4 LNILVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVS 62 >gi|229002562|ref|ZP_04160621.1| transcriptional regulator/TPR domain protein [Bacillus mycoides Rock3-17] gi|229009341|ref|ZP_04166620.1| transcriptional regulator/TPR domain protein [Bacillus mycoides Rock1-4] gi|228751932|gb|EEM01680.1| transcriptional regulator/TPR domain protein [Bacillus mycoides Rock1-4] gi|228758542|gb|EEM07680.1| transcriptional regulator/TPR domain protein [Bacillus mycoides Rock3-17] Length = 422 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+RIR R+ +Q +L + + + + E G + S L+ ++E L+ F Sbjct: 1 MNVGERIRQIRIHKEFTQGELVSGI-CSITYLSRIENGQIKPSTSFLEKVAEKLDVGYKF 59 Query: 73 FFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQ 109 D + E + I + L L +++ Sbjct: 60 LVDADHEDVEPKLLQICEKYKKEKIISEKDLSLLELYVR 98 >gi|256376078|ref|YP_003099738.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920381|gb|ACU35892.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 279 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P +G R+ R +S +L LG+ K E G +V + L +E+L Sbjct: 2 RPTVRSRRLGARLGDHRQQNNLSGTELAARLGVHQATWSKIETGKTKVSPALLARTAEIL 61 Query: 67 ESPIS 71 + P Sbjct: 62 DIPAD 66 >gi|196040012|ref|ZP_03107315.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196029271|gb|EDX67875.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 186 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R M+ + + GI+ + + E+G S L+ I++ L P+ F Sbjct: 6 LGQTILSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 Query: 75 DVSPTVCSDISSEEN 89 S IS +++ Sbjct: 66 INEIDTDSLISKKKD 80 >gi|167748986|ref|ZP_02421113.1| hypothetical protein ANACAC_03767 [Anaerostipes caccae DSM 14662] gi|167651608|gb|EDR95737.1| hypothetical protein ANACAC_03767 [Anaerostipes caccae DSM 14662] Length = 371 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 24/51 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R G++Q++L +G++ V K+E G + + L ++ + Sbjct: 14 KKRKEKGITQDQLAAYIGVSKASVSKWETGQSYPDITFLPQLAANFNMSVD 64 >gi|160945426|ref|ZP_02092652.1| hypothetical protein FAEPRAM212_02948 [Faecalibacterium prausnitzii M21/2] gi|158443157|gb|EDP20162.1| hypothetical protein FAEPRAM212_02948 [Faecalibacterium prausnitzii M21/2] Length = 66 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G +Q L +G+T + V +E L +++ + + Sbjct: 4 ISERLQHLRLTHGYTQTDLARTMGVTRRAVYAWEHDKC-PEILHLIQLAQFYQVSTDYL 61 >gi|311747423|ref|ZP_07721208.1| putative toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] gi|126574781|gb|EAZ79152.1| putative toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] Length = 194 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 26/75 (34%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P + I +G +I+ R G + + G++ + K E G L I L Sbjct: 4 PEHLTIQIGNKIKGIRKEKGWKLGEFADKSGMSIAMLSKIENGRVIPTIPSLMQIINTLN 63 Query: 68 SPISFFFDVSPTVCS 82 ++ FF Sbjct: 64 LNLADFFSDLKVDGD 78 >gi|83644480|ref|YP_432915.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632523|gb|ABC28490.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 192 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R ++ E+L + ++ + + E+G + L +++ + S Sbjct: 10 LGKRIQQLRKSEKLTLEQLAQQSNVSRSMLSQIERGQANPTFATLWNLTRAMGIEWSELV 69 Query: 75 DVSPTVC 81 D S V Sbjct: 70 DESEGVS 76 >gi|71065042|ref|YP_263769.1| Cro/CI family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71038027|gb|AAZ18335.1| possible transcriptional regulator, Cro/CI family [Psychrobacter arcticus 273-4] Length = 224 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R + Q +L E +G T Q + E ++ +S IS+ L+ I + Sbjct: 1 MALGHRVKEAREFRSLKQGELAELIGWTQQALSTLENRDSK-KSSYSAQISKALDIDIDW 59 Query: 73 FFDVSPTVCS 82 + + + Sbjct: 60 LISGAGEMIN 69 >gi|322507551|gb|ADX03005.1| Putative phage repressor [Acinetobacter baumannii 1656-2] Length = 224 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ R LG++Q + GI+ + + +EK ++ A +L +S+ +++ Sbjct: 9 IGLRIKEERTRLGLTQPDFAQIAGISKRTLIDWEKDLSSPNAVQLSALSQA-GVDVNY 65 >gi|319937945|ref|ZP_08012345.1| hypothetical protein HMPREF9488_03181 [Coprobacillus sp. 29_1] gi|319806851|gb|EFW03490.1| hypothetical protein HMPREF9488_03181 [Coprobacillus sp. 29_1] Length = 107 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D ++ +R++ R ++Q+++ L I V +E G + S L +S++ Sbjct: 2 PIDTDISRRLKEYRNFKHLTQKEVANILHIPHSAVSDFENGKREITVSELSLLSQLYGRN 61 Query: 70 I 70 I Sbjct: 62 I 62 >gi|311896864|dbj|BAJ29272.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 128 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR +R S +L E G++ + + E+G+ + A LQ I++ L + Sbjct: 9 LGEYIREQRRSAQYSLRQLAEVAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAETLY 68 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + ++ P Sbjct: 69 VQAGILEERGEEGPGLRAAILADP 92 >gi|260589105|ref|ZP_05855018.1| putative DNA-binding protein [Blautia hansenii DSM 20583] gi|260540525|gb|EEX21094.1| putative DNA-binding protein [Blautia hansenii DSM 20583] Length = 45 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 28/40 (70%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 I +GK I +R LGM+Q++L E +G++ + V K+E GV+ Sbjct: 4 IKIGKYIAGKRKSLGMTQKQLAEKIGMSDKSVSKWESGVS 43 >gi|168177975|ref|ZP_02612639.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182671147|gb|EDT83121.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 130 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLD 59 >gi|15807441|ref|NP_296174.1| PbsX family transcriptional regulator [Deinococcus radiodurans R1] gi|6460274|gb|AAF11998.1|AE002075_2 transcriptional regulator, PbsX family [Deinococcus radiodurans R1] Length = 64 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI++ R ++Q L + L ++ Q + E G ++ + I F Sbjct: 3 NRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIFQD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|85707104|ref|ZP_01038192.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668390|gb|EAQ23263.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 207 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G + P P+D +G R+R R G + E+ + G+ + K E G L+ Sbjct: 16 TGAETGPEPLD--LGVRVRGLRKARGWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKK 73 Query: 62 ISEVLESPISFFF 74 +++ LE + F Sbjct: 74 LAQGLEISVPQLF 86 >gi|85707126|ref|ZP_01038214.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668412|gb|EAQ23285.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 133 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P G R+ R GMSQ L + LG+ + ++ +E ++ A++L ++ +L Sbjct: 11 DPDSTTFGDRVTGARERSGMSQTDLAKRLGVKLKTLKAWENDLSEPRANKLSMMAGMLNV 70 Query: 69 PISFF 73 + + Sbjct: 71 SLLWL 75 >gi|332286204|ref|YP_004418115.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] gi|330430157|gb|AEC21491.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] Length = 194 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 M G++ + L E G T + K E G + + L I+ L +++FF V P Sbjct: 1 MARGLTLDALAEKSGFTKGYLSKLENGKSTPPIASLARIARALGHDLNYFF-VDPGEPQQ 59 Query: 84 ISSEE 88 S E Sbjct: 60 GSDES 64 >gi|323530241|ref|YP_004232393.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323387243|gb|ADX59333.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 111 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 27 GMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GM Q+KLG +G+ ++ +YE GV+ +++VL P ++F+ Sbjct: 22 GMPQDKLGVQIGLDEHTASARISRYETGVHEPPFEIAVKLAKVLRVPAAYFY 73 >gi|310642245|ref|YP_003947003.1| merr family transcriptional regulator [Paenibacillus polymyxa SC2] gi|309247195|gb|ADO56762.1| MerR family transcriptional regulator [Paenibacillus polymyxa SC2] Length = 179 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR R +S +++ E G++ + + E + L I+ L P++F Sbjct: 3 IGCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALNVPLAFL 61 >gi|307285484|ref|ZP_07565623.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306502708|gb|EFM71973.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 231 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR LG++Q ++ E L +T Q + +E + L +S + E + T+ Sbjct: 1 MRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDRLLKEDNTM 60 Query: 81 CSDISSEENN 90 +S + Sbjct: 61 VEKLSKDIRE 70 >gi|301794929|emb|CBW37392.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] Length = 299 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ G+ +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGVSRPYFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPT 79 Sbjct: 61 SLMPDFSA 68 >gi|239939715|ref|ZP_04691652.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239986200|ref|ZP_04706864.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291443141|ref|ZP_06582531.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291346088|gb|EFE72992.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 190 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 2/84 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ +++ L I+ D Sbjct: 13 RNLKRWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVAITTLLDH 72 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 + E V + + + Sbjct: 73 EQGPQVRLVPESRAVR--MWSTEA 94 >gi|284990495|ref|YP_003409049.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063740|gb|ADB74678.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 64 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R RM G+SQ L +G++ Q + E G ++ ++ + FDV+ Sbjct: 5 VRALRMQRGLSQGDLAVVMGVSRQTINSIETGRYLPSLPLAIGLARFFKTTVEEVFDVAE 64 >gi|281421595|ref|ZP_06252594.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella copri DSM 18205] gi|281404350|gb|EFB35030.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella copri DSM 18205] Length = 128 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 15 VGKRI----RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G +I +L+R LG++Q+ L + I ++K E G S ++ I ++L + Sbjct: 61 LGMKIQEVMKLQRKALGITQQDLADMSEIAISTIKKIESGKGNPSLSTVEKIMDILGMEV 120 Query: 71 SF 72 + Sbjct: 121 KY 122 >gi|169344358|ref|ZP_02865331.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297483|gb|EDS79590.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 105 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 13 INVGKRIRLRRMIL--GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G ++ R ++Q+ L + G++ + E ++E L+ + Sbjct: 1 MKIGTNLQRIRKAKDPKITQQDLAKATGLSRSYLSDVEHNRYNPSLDTTIALAEALDVTV 60 Query: 71 SFF 73 + Sbjct: 61 NDL 63 >gi|89055867|ref|YP_511318.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88865416|gb|ABD56293.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 469 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 55/131 (41%), Gaps = 11/131 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG ++R R +G++Q+ LGI+ + + E + + L +++ ++ Sbjct: 6 LYVGAKLRSIRTGVGLTQKDFAAKLGISLPYLNQMENNNRPLSTAVLMGLAQDFGVDVT- 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-----DDVKVRQKIIELVRSIV 127 SD +++ + ++ P ++ + + + + +EL R+ Sbjct: 65 -----ELSASDADRIVSDMREALADPLFAEVAPALADLRLVASNAPTLARAFLELHRAYR 119 Query: 128 SSEKKYRTIEE 138 + ++ +++E Sbjct: 120 QTHERLASLDE 130 >gi|83648341|ref|YP_436776.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636384|gb|ABC32351.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 111 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 12/109 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF 73 +G+++R R +S E+L G + + E + ++ I+ L+ F Sbjct: 5 LGRKLRKLREQQKLSLEQLAMLSGSSKSYLWNLENFESSNPSVEKIDKIATALKVTSEFL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + S T +E + S P+ D K ++I+++ Sbjct: 65 LNGSATTPDQGVIDEAFFRKYKSLPEA-----------DKKRLRQIVDV 102 >gi|78062472|ref|YP_372380.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77970357|gb|ABB11736.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 142 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 22/49 (44%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R G++Q +L LG+T Q + E + V RL + L ++ Sbjct: 19 RKAAGLTQAQLAARLGVTQQSYAQLEANPSAVSIERLFKVLNTLGVHMT 67 >gi|21240962|ref|NP_640544.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21106246|gb|AAM35080.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 193 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G IR RR LG Q +L +G++ Q + EKG R + + L Sbjct: 10 IGNIIRARRKRLGWDQARLAHEIGVSRQWIVDIEKGKPRAELQLILRALQALG 62 >gi|150018305|ref|YP_001310559.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904770|gb|ABR35603.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 68 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R + +SQE+L + +G+T Q + E G I + L ++ F Sbjct: 5 KMKSARASMDLSQEQLADIVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDIF 61 >gi|325121964|gb|ADY81487.1| hypothetical protein BDGL_000901 [Acinetobacter calcoaceticus PHEA-2] Length = 197 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 34/91 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I + +++R R+ G + + L ++ + E+G A L+ ++ L P Sbjct: 3 DINIRIAQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVP 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 ++ FD S P+ Sbjct: 63 LTQLFDSPQNTQSPQPMVRRTQQAEWKDPET 93 >gi|312867200|ref|ZP_07727410.1| peptidase S24-like protein [Streptococcus parasanguinis F0405] gi|311097329|gb|EFQ55563.1| peptidase S24-like protein [Streptococcus parasanguinis F0405] Length = 225 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ RR+ G++Q + E L I+ + +E G+ L+ +++ L +F + Sbjct: 5 KKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINK 64 Query: 77 SPT 79 Sbjct: 65 DSA 67 >gi|296876982|ref|ZP_06901026.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432017|gb|EFH17820.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 225 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ RR+ G++Q + E L I+ + +E G+ L+ +++ L +F + Sbjct: 5 KKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINK 64 Query: 77 SPT 79 Sbjct: 65 DSA 67 >gi|294814036|ref|ZP_06772679.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294326635|gb|EFG08278.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L Sbjct: 29 NLGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 88 Query: 74 F 74 + Sbjct: 89 Y 89 >gi|291550119|emb|CBL26381.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 128 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R +L ++Q++ E + + V YE G + S + I + + Sbjct: 3 ERIKKLRKVLKLTQQEFAESIKVKRNTVATYEMGRSIPSDSAIALICKTFNVNEEWLRSG 62 Query: 77 SPTVCSDISSEENN---VMDFISTPD 99 + + ++ E+ V + + D Sbjct: 63 AGDMFLELPEEDEEAAYVSELLEDSD 88 >gi|262372962|ref|ZP_06066241.1| LexA repressor [Acinetobacter junii SH205] gi|262312987|gb|EEY94072.1| LexA repressor [Acinetobacter junii SH205] Length = 224 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G ++ R M+Q++L + G+ + E G N + ++ L Sbjct: 8 LGDNLKSIRKAKKMTQKELAQKSGVKQSVISDLETG-NAKSTGSILELANALGV 60 >gi|229100661|ref|ZP_04231509.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29] gi|229107528|ref|ZP_04237280.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28] gi|229119263|ref|ZP_04248568.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3] gi|228664188|gb|EEL19724.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3] gi|228675920|gb|EEL31013.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28] gi|228682754|gb|EEL36784.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29] Length = 64 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 3 NQIYELRTENNISQGALADKCSVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|308233627|ref|ZP_07664364.1| toxin-antitoxin system, antitoxin component, Xre family protein [Atopobium vaginae DSM 15829] gi|328944525|ref|ZP_08241986.1| XRE family transcriptional regulator [Atopobium vaginae DSM 15829] gi|327490926|gb|EGF22704.1| XRE family transcriptional regulator [Atopobium vaginae DSM 15829] Length = 72 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + RI + R G+SQ +L + +G+ + + YE + IS VL I Sbjct: 1 MEVVITNRIAVFRKEKGLSQHRLAKAVGLKRRSIMAYENNIISPTLETAYKISLVLGKDI 60 Query: 71 SFFFDVSP 78 F +S Sbjct: 61 KEVFILSD 68 >gi|199598262|ref|ZP_03211683.1| hypothetical protein LRH_10310 [Lactobacillus rhamnosus HN001] gi|199590865|gb|EDY98950.1| hypothetical protein LRH_10310 [Lactobacillus rhamnosus HN001] Length = 393 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R + G ++++L + +G+T Q V +YE L ++ + F Sbjct: 1 MFIGSKLQALRELNGYTRKELSDVIGVTQQAVWQYENDNVMPKIEILNTFQKIFNVEMLF 60 Query: 73 FFDVS 77 S Sbjct: 61 LISGS 65 >gi|170782721|ref|YP_001711055.1| putative DNA-binding membrane protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157291|emb|CAQ02476.1| putative DNA-binding membrane protein [Clavibacter michiganensis subsp. sepedonicus] Length = 167 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ R G +QE+L + GIT + VQ+ E G N L +++ LE + F Sbjct: 5 RVTDLRTQRGWTQERLAKTSGITVRTVQRLEAG-NDASLDTLTRVAKALEVQVRDLF 60 >gi|167924589|ref|ZP_02511680.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] Length = 74 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 GKR+ R G SQEKL G+ V E+G + + ++E L S Sbjct: 3 GKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVAPSDMLA 62 Query: 74 FDVSPTVCS 82 FDV P + Sbjct: 63 FDVEPVKAT 71 >gi|167770329|ref|ZP_02442382.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM 17241] gi|167667651|gb|EDS11781.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM 17241] Length = 70 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R +SQ+ + E L ++ YE G + L ++ + I + + Sbjct: 3 ERIRNMREDKDLSQKDMAEILHVSQTTYSDYELGKINIPTQTLIKLASFHHTSIDYLLGL 62 Query: 77 SPTVCS 82 + S Sbjct: 63 TDNPAS 68 >gi|270308504|ref|YP_003330562.1| DNA-binding protein [Dehalococcoides sp. VS] gi|270154396|gb|ACZ62234.1| DNA-binding protein [Dehalococcoides sp. VS] Length = 69 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R I ++QE+L + LGIT Q V E+G I+ + ++ I F Sbjct: 3 NKLKVLRAINNLTQEELADKLGITRQTVISIERGKYSPSLELAFKIAALFKTTIEEVF 60 >gi|153940683|ref|YP_001389936.1| DNA binding protein [Clostridium botulinum F str. Langeland] gi|152936579|gb|ABS42077.1| DNA binding protein [Clostridium botulinum F str. Langeland] gi|295318020|gb|ADF98397.1| DNA binding protein [Clostridium botulinum F str. 230613] Length = 70 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R M+Q++L + + ++ + + EKG I+ V + I + + Sbjct: 3 NRVKELRAASNMTQQQLADLVSVSSRTIISLEKGQYNPSIMLAYKIARVFNTTIEELYCL 62 Query: 77 SPTVCSD 83 + ++ Sbjct: 63 KENLENE 69 >gi|149004484|ref|ZP_01829204.1| Phage transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP14-BS69] gi|147757583|gb|EDK64604.1| Phage transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP14-BS69] Length = 75 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R +S +++ + L I Q + KYE +++ L ++ + F F Sbjct: 6 LRAIRTNYNLSAKEVADKLNIHQQTLLKYEHDSSKIPMDLLDKLARLYNVEKDFIFLGKK 65 Query: 79 TVCSDISSE 87 + E Sbjct: 66 YELNHNLGE 74 >gi|22538252|ref|NP_689103.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22535165|gb|AAN00976.1|AE014287_16 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 306 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKR+R + L +S G LG+ + Y +G N L+ +S++ P+ +F+ Sbjct: 12 VGKRLRQVKDELNLSFTDFGNRLGLKKSTINAYVRGDNLAPLEVLEKVSKIYGKPVGWFY 71 >gi|78186565|ref|YP_374608.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166467|gb|ABB23565.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 105 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R+ G S+EKL E G++ + E+G+ + Q ++ L + I Sbjct: 13 LGRNIRAARVKAGYSREKLSELSGLSTNYIGIIERGMKNITIINCQRLACALSTSIDKLL 72 Query: 75 DV 76 + Sbjct: 73 EG 74 >gi|120536941|ref|YP_956999.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326775|gb|ABM21084.1| transcriptional regulator, XRE family [Marinobacter aquaeolei VT8] Length = 231 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G+S EKL E G++ + + K E+G V R + ++ L + + F Sbjct: 20 IGLAIRYARKAAGLSGEKLAEATGLSLRTIVKIEQGDGAVAFGRYKSVACELG--LEWMF 77 Query: 75 DVSPTVCSDIS 85 DV S+ + Sbjct: 78 DVFGRDTSNEA 88 >gi|296241899|ref|YP_003649386.1| XRE family transcriptional regulator [Thermosphaera aggregans DSM 11486] gi|296094483|gb|ADG90434.1| transcriptional regulator, XRE family [Thermosphaera aggregans DSM 11486] Length = 297 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ RR L +S+ +L E LG+T + + YEKG V + ++E + I F ++ Sbjct: 135 QKFCERRTELNLSRGELAEALGLTRKALYLYEKGETMVSLNTALQLAEFMGEDI--FKEI 192 Query: 77 SP 78 P Sbjct: 193 DP 194 >gi|295136229|ref|YP_003586905.1| DNA-binding protein [Zunongwangia profunda SM-A87] gi|294984244|gb|ADF54709.1| putative DNA-binding protein [Zunongwangia profunda SM-A87] Length = 80 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++G+ ++ RR + ++Q++L + I + K E G LQ I++VL IS Sbjct: 16 KDIGQALQERRHHMHITQKQLADMADIGINTLYKIETGQANPTIESLQKIADVLGMEIS 74 >gi|295134898|ref|YP_003585574.1| DNA binding helix-turn helix protein [Zunongwangia profunda SM-A87] gi|294982913|gb|ADF53378.1| DNA binding helix-turn helix protein [Zunongwangia profunda SM-A87] Length = 66 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I++ R M+QE L + LG++ Q V EK +S++ ++ F + Sbjct: 5 IKVERAKKNMTQEDLAKLLGVSRQTVNSMEKNRYAPSTILALKLSKIFACSVNEIFQLDD 64 Query: 79 T 79 T Sbjct: 65 T 65 >gi|228939079|ref|ZP_04101676.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971957|ref|ZP_04132577.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978568|ref|ZP_04138943.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228781167|gb|EEM29370.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228787774|gb|EEM35733.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820607|gb|EEM66635.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939579|gb|AEA15475.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 133 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R MSQ L + +G+T + E G G I+ VL P+ F+ Sbjct: 40 LRGKKRMSQVALADKVGVTPGHIADLETGRRDPGGKLAFQIAIVLGFPMEHFY 92 >gi|227828123|ref|YP_002829903.1| XRE family transcriptional regulator [Sulfolobus islandicus M.14.25] gi|227830830|ref|YP_002832610.1| helix-turn-helix domain protein [Sulfolobus islandicus L.S.2.15] gi|229579726|ref|YP_002838125.1| transcriptional regulator, XRE family [Sulfolobus islandicus Y.G.57.14] gi|229585362|ref|YP_002843864.1| XRE family transcriptional regulator [Sulfolobus islandicus M.16.27] gi|238620323|ref|YP_002915149.1| transcriptional regulator, XRE family [Sulfolobus islandicus M.16.4] gi|284998345|ref|YP_003420113.1| helix-turn-helix domain protein [Sulfolobus islandicus L.D.8.5] gi|227457278|gb|ACP35965.1| helix-turn-helix domain protein [Sulfolobus islandicus L.S.2.15] gi|227459919|gb|ACP38605.1| transcriptional regulator, XRE family [Sulfolobus islandicus M.14.25] gi|228010441|gb|ACP46203.1| transcriptional regulator, XRE family [Sulfolobus islandicus Y.G.57.14] gi|228020412|gb|ACP55819.1| transcriptional regulator, XRE family [Sulfolobus islandicus M.16.27] gi|238381393|gb|ACR42481.1| transcriptional regulator, XRE family [Sulfolobus islandicus M.16.4] gi|284446241|gb|ADB87743.1| helix-turn-helix domain protein [Sulfolobus islandicus L.D.8.5] gi|323475185|gb|ADX85791.1| transcriptional regulator, XRE family [Sulfolobus islandicus REY15A] gi|323477917|gb|ADX83155.1| transcriptional regulator, XRE family [Sulfolobus islandicus HVE10/4] Length = 164 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R LG+SQ++L + L ++ V+++E G + S+ + + ++L + + + Sbjct: 82 IKNAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLE-NE 140 Query: 79 TVCSDISSEENNVMDFISTPDG 100 + E + D ++ +G Sbjct: 141 ESEKEFDETELTLGDVVNIKEG 162 >gi|256380247|ref|YP_003103907.1| helix-turn-helix domain protein [Actinosynnema mirum DSM 43827] gi|255924550|gb|ACU40061.1| helix-turn-helix domain protein [Actinosynnema mirum DSM 43827] Length = 351 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 9/109 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R + G+++ L + +G+T V +YE+G +R L ++ L+ P F Sbjct: 8 RLTQARHLAGLTRRGLADLVGVTPTAVGQYEQGAHRPRPELLAALAAALDVPPPFLTADR 67 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P D +S L+ R + + V ++ EL ++ Sbjct: 68 PHPRLDPASAHFR---------SLRATRSYQRAKAVAHAEQTWELASAL 107 >gi|91773669|ref|YP_566361.1| XRE family transcriptional regulator [Methanococcoides burtonii DSM 6242] gi|91712684|gb|ABE52611.1| Helix-turn-helix-containing transcriptional regulator, XRE family [Methanococcoides burtonii DSM 6242] Length = 65 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++QE+L + +G+ + + EKG I++V +S I F + Sbjct: 4 RIKELRARYDLTQEELAKKVGVRRETILFLEKGKYNPSLKLAYTIAKVFDSTIEDVFILD 63 Query: 78 PT 79 Sbjct: 64 DE 65 >gi|77918847|ref|YP_356662.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77544930|gb|ABA88492.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 184 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S E++ + L + Q+YE G + AS L I+ L+ + Sbjct: 6 REIASRVRELRELSEISVEQMADSLNLPILTYQRYENGSEDIPASILYKIATDLKVDMGL 65 Query: 73 FFDVS 77 Sbjct: 66 LLTGD 70 >gi|78060929|ref|YP_370837.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968814|gb|ABB10193.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 180 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSES 63 >gi|86142246|ref|ZP_01060756.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis MED217] gi|85830998|gb|EAQ49455.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis MED217] Length = 251 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK IR R + +SQ+ E + + YE+G + + I+ PI Sbjct: 3 FFGKNIRKIRSVKTLSQQAFAELFDLKRGTLGAYEEGRSEPKIETIIKIANYFSIPIDDL 62 >gi|84388954|ref|ZP_00991162.1| hypothetical protein V12B01_09741 [Vibrio splendidus 12B01] gi|84377018|gb|EAP93890.1| hypothetical protein V12B01_09741 [Vibrio splendidus 12B01] Length = 70 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G ++R R G+SQ+KL I V + E+G + ++ +++ L+ ++ Sbjct: 6 VKFGMKLREVRKKNGISQDKLALIADIDRSYVGRIERGEVNITLDKVYCLAQALKCNVT 64 >gi|75761606|ref|ZP_00741559.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490910|gb|EAO54173.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 70 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +Q+ L + +G+T Q + EKG + ++ V + + F Sbjct: 5 NRVRELRARFRWTQQDLADAIGVTRQTIGLIEKGDYSPSVTMALKLAAVFQVTVEEVF 62 >gi|116748595|ref|YP_845282.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697659|gb|ABK16847.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 204 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 9/92 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G ++R R ++ + L G++ + + E + L ++ L+ + F Sbjct: 17 NIGNKVRELRQKNHLTLQDLAVKTGLSKPFLSQIENNKVVPPVATLFRLARALKVALGHF 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F S E++ + + ++L+R Sbjct: 77 FQ---------ESVEDDRIAITRKKERVRLDR 99 >gi|260598023|ref|YP_003210594.1| HTH-type transcriptional regulator YdcN [Cronobacter turicensis z3032] gi|260217200|emb|CBA31069.1| Uncharacterized HTH-type transcriptional regulator ydcN [Cronobacter turicensis z3032] Length = 204 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 49/137 (35%), Gaps = 18/137 (13%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + ++ + ++ R S + + G++ + + E+ + + L I+ P Sbjct: 30 DITAHLAQTLKALRQQKNWSLTQAAQETGVSKAMLGQIERNESSPTVATLWKIATGFNVP 89 Query: 70 ISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIV 127 S F +P + +++ +++ + F D ++R + L ++ Sbjct: 90 FSVFITPPAPGARTVFDAQQTMLVEPL-----------FPW--DEQLR---FDMLAVTLA 133 Query: 128 SSEKKYRTIEEECMVEQ 144 + T E + E Sbjct: 134 PGAQSDSTPHENGVTEH 150 >gi|188585658|ref|YP_001917203.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350345|gb|ACB84615.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 89 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +++ R G+SQ++L E +G + + E L I++ + + FD Sbjct: 31 RQVIKLRKEKGLSQKELAEKIGTKQSAISRLENESYNPSIELLYKIAKACDRDLHIKFD 89 >gi|148378605|ref|YP_001253146.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153931517|ref|YP_001382992.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937449|ref|YP_001386538.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288089|emb|CAL82157.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152927561|gb|ABS33061.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933363|gb|ABS38862.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 130 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLD 59 >gi|160897719|ref|YP_001563301.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363303|gb|ABX34916.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 214 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 5/92 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R LG+SQE G++ YE G N L I + Sbjct: 27 QRLREERKRLGLSQEAFASLGGVSKNTQSNYETGANLPDVGYLNTI-RGFGVDSGYVLTG 85 Query: 77 ----SPTVCSDISSEENNVMDFISTPDGLQLN 104 P+ + L+L Sbjct: 86 IRTFDPSAIEHAQPAATLAARLVQERKRLELT 117 Score = 33.6 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R+ R L ++ +L G+ + K+E+G A LQ + + + + Sbjct: 105 ARLVQERKRLELTVGQLAAKSGVDRLALLKFEEGEFAPDAKALQQL-HAVGVDVGY 159 >gi|108761818|ref|YP_632650.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108465698|gb|ABF90883.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 100 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R +G+SQ ++ E + + + + E+G L + VL + Sbjct: 26 IGTQVRAARHRVGLSQAQVAEAIHVPTLVLSRLERGRLLPSLPTLVDLCGVLRVSVDLLL 85 Query: 75 DVS 77 Sbjct: 86 SGE 88 >gi|29833583|ref|NP_828217.1| transcriptional regulatory protein [Streptomyces avermitilis MA-4680] gi|29610707|dbj|BAC74752.1| putative transcriptional regulatory protein [Streptomyces avermitilis MA-4680] Length = 201 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 25/75 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G + + L G++ + + E+ + I + L ++ D Sbjct: 24 RNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSVTTLLDY 83 Query: 77 SPTVCSDISSEENNV 91 I + V Sbjct: 84 EQGPKVRIVPADQAV 98 >gi|331270812|ref|YP_004397249.1| hypothetical protein CbC4_5052 [Clostridium botulinum BKT015925] gi|329127530|gb|AEB77473.1| hypothetical protein CbC4_5052 [Clostridium botulinum BKT015925] Length = 69 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R +Q L E L I+ Q V EK I+EV I+ F Sbjct: 4 NRIKIFRTEHDWTQADLAEKLHISRQAVISIEKYKYTPSLELAFKIAEVFNVSINEVF 61 >gi|315929228|gb|EFV08447.1| helix-turn-helix family protein [Campylobacter jejuni subsp. jejuni 305] Length = 236 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + + R++ R G +Q L E G++ ++KYE G V+ L+ I+ + Sbjct: 1 MELSLRMKEYREYFGWTQTDLSEKSGVSISTIKKYEAGSVDNFTYGNLKKIASAFNLSPA 60 Query: 72 FF 73 F Sbjct: 61 SF 62 >gi|309776168|ref|ZP_07671159.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] gi|308916119|gb|EFP61868.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] Length = 92 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + +P G ++R R GM+ +L I F ++K E GV+ L + + Sbjct: 4 RTKHPATELTGMKLRELREKAGMTLRELANRSMIDFTYIKKIELGVSDPSIITLDILLQA 63 Query: 66 LESPISFFFDVS 77 ++ + FFD Sbjct: 64 MDLNLQDFFDSE 75 >gi|303253615|ref|ZP_07339753.1| hypothetical protein APP2_0803 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245786|ref|ZP_07527872.1| hypothetical protein appser1_9890 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248022|ref|ZP_07530051.1| hypothetical protein appser2_10040 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254759|ref|ZP_07536586.1| hypothetical protein appser9_9980 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259199|ref|ZP_07540929.1| hypothetical protein appser11_9970 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302647535|gb|EFL77753.1| hypothetical protein APP2_0803 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853488|gb|EFM85707.1| hypothetical protein appser1_9890 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855420|gb|EFM87594.1| hypothetical protein appser2_10040 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862285|gb|EFM94252.1| hypothetical protein appser9_9980 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866866|gb|EFM98724.1| hypothetical protein appser11_9970 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 150 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R LG++Q + G++ + KYE+GV G+ L ++E+ I + F + Sbjct: 10 RLKNERNRLGLTQADIANKCGVSREMWGKYERGVALAGSEVLFSLTEI-GVDIGYLFSGT 68 Query: 78 ---PTVCSDISSEENNVMDFISTPDGLQ 102 P ++IS ++ ++ Sbjct: 69 RSVPLTENEISLLDDYRQSNEQGKAAIE 96 >gi|241894860|ref|ZP_04782156.1| possible antirepressor [Weissella paramesenteroides ATCC 33313] gi|241871868|gb|EER75619.1| possible antirepressor [Weissella paramesenteroides ATCC 33313] Length = 333 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G + R+ G S +L G+ + YE G + +S+ L+ I Sbjct: 267 VAIGNNVNKYRLERGYSMNELARRSGLYVNNIFNYENGRTTPRLETIFKLSDALDVSI 324 >gi|227522811|ref|ZP_03952860.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227090012|gb|EEI25324.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 198 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V K +R R+ G S KL E G++ + + E + + I L P + Sbjct: 17 VSKNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLSVPYTALL 76 Query: 75 DV 76 + Sbjct: 77 EG 78 >gi|157362961|ref|YP_001469728.1| XRE family transcriptional regulator [Thermotoga lettingae TMO] gi|157313565|gb|ABV32664.1| putative transcriptional regulator, XRE family [Thermotoga lettingae TMO] Length = 131 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 28/81 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R ++Q+ L + LGI+ V K E G + L I + Sbjct: 34 QIGGQLMAYRKKHNLTQKDLAKKLGISQSMVSKIETGEKNISIRVLTKIVAAFGGRVRIS 93 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + P + E F Sbjct: 94 LGILPEEEENKVPEYKFREAF 114 >gi|110598649|ref|ZP_01386915.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031] gi|110339761|gb|EAT58270.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031] Length = 129 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 VG IR R L +SQ +L G+ +YE+G +R ++ + Sbjct: 69 VGADIRRIRKKLNLSQAELASLFGVGKMAFSRYERGESRPPVPLVKLL 116 >gi|297162135|gb|ADI11847.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 101 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I +G+ + RR LG SQ +L G+T + + E + L ++ L P+ Sbjct: 36 IEIGRTVYQRRTELGWSQTELARRAGMTQPAIARLETSLTLPSTRTLLRVATALGQPL 93 >gi|291524263|emb|CBK89850.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 73 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L ++Q+++G G++ Q + E+G + I++V + F + Sbjct: 5 NRLKERRAALNVNQQEMGRLCGVSRQTISLIERGDYSPSVTLALTIAKVCGVTVEDVFYL 64 Query: 77 SPTVCSD 83 + Sbjct: 65 QEEDEDE 71 >gi|288905255|ref|YP_003430477.1| transcriptional activator, Rgg/GadR/MutR family [Streptococcus gallolyticus UCN34] gi|288731981|emb|CBI13546.1| putative transcriptional activator, Rgg/GadR/MutR family [Streptococcus gallolyticus UCN34] Length = 296 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+GK ++ R G+SQ+++ + I+ Q+ ++E+G++ + A L + E + + F Sbjct: 4 NLGKSFKMLRESKGLSQKEIAGDI-ISIAQLSRFERGISSINAETLYNCLENMNVSVEEF 62 Query: 74 FDV-SPTVCSDISSEENNVMDFISTPDGLQLNRY---FIQIDDVKVRQKIIEL 122 V + + + +N+V + L+L Y + ++ + QK L Sbjct: 63 QCVCRDFLQNQNAIFQNDVAKAFLEKNTLKLREYLAKYQRLTTIAPEQKFYRL 115 >gi|323527082|ref|YP_004229235.1| hypothetical protein BC1001_2760 [Burkholderia sp. CCGE1001] gi|323384084|gb|ADX56175.1| protein of unknown function DUF955 [Burkholderia sp. CCGE1001] Length = 386 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G R++ R+ +SQE L + LG+ V E G +V L+ +E L+ Sbjct: 12 LGARLKAARVSASLSQEALAQTLGLARTTVVAIEAGKRKVSLEELRAFAEQLDV 65 >gi|269795030|ref|YP_003314485.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269097215|gb|ACZ21651.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 242 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 D +G +R RR LG + ++ G++ + + E+G R L I++ L + Sbjct: 21 DRRLGTVVRARRHALGRTLVEVAGSSGLSHSFLSQLERGRARPSMRSLYLIAQALGT 77 >gi|255037916|ref|YP_003088537.1| helix-turn-helix domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254950672|gb|ACT95372.1| helix-turn-helix domain protein [Dyadobacter fermentans DSM 18053] Length = 363 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 10/107 (9%) Query: 18 RIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R+ R + G+S +KL LG Q + + E G ++L +S L+ P+ +F Sbjct: 8 RLTTARKMKGLSLQKLAIMLGRPFNKQLLHRLENGSQVPNGNQLIKLSNALDQPLDYFLK 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S +++ S++ + L+L + ++ +EL Sbjct: 68 PSFATVAELDSKKIQKAGKKAGGRVLELASDYF--------ERFLEL 106 >gi|305680480|ref|ZP_07403288.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|305660011|gb|EFM49510.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length = 86 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK P I + R+RL R M++ +L + + Q + E+G + Sbjct: 1 MNPKKRPT---IPIFNRVRLLRAERDMTRAQLAARVDVNPQTIGALERGDHSPSLDLAMR 57 Query: 62 ISEVLESPISFFF 74 I EV E P+ F Sbjct: 58 ICEVFELPVEAVF 70 >gi|300772891|ref|ZP_07082760.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759062|gb|EFK55889.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 104 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV-LESPISF 72 +G+ I+ R + M+QE+L E +G + + E G + + S L + E L I+F Sbjct: 43 IGEMIKQERKLAKMTQEQLAEKIGAKKSFISRIENGHSDIQLSTLYKLIEFGLGRKINF 101 >gi|228925015|ref|ZP_04088145.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834678|gb|EEM80187.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 65 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I R +SQEKL +G++ + + E + I++VL + + F Sbjct: 2 NKIAELRKEKLISQEKLAAKVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSVESIFSS 61 Query: 77 S 77 S Sbjct: 62 S 62 >gi|218132921|ref|ZP_03461725.1| hypothetical protein BACPEC_00782 [Bacteroides pectinophilus ATCC 43243] gi|217991794|gb|EEC57798.1| hypothetical protein BACPEC_00782 [Bacteroides pectinophilus ATCC 43243] Length = 70 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R M Q +L + +G+ + + E G I++V ++ + F Sbjct: 7 RLHELRKERNMQQAELAKLVGVRRETIGNLENGRYNPSLKLAMDIAKVFDTTVEDIFTFE 66 Query: 78 PTVC 81 Sbjct: 67 DDDE 70 >gi|229917672|ref|YP_002886318.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469101|gb|ACQ70873.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 396 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R M+Q +L E + +T + E G L+ ++ L+ + Sbjct: 2 IGERIKTLRKQKKMTQTQLAEGI-VTKSMLSMIENGKAEASMRSLRELASRLDVSMQQLL 60 Query: 75 DVSPTVCSDISSEENNVMD 93 E+ + Sbjct: 61 TDPKEAELQTMVEQLEYEE 79 >gi|220914383|ref|YP_002489692.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861261|gb|ACL41603.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 507 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +V +R R G +Q +L LG + V + E+G + +Q + + + I Sbjct: 8 HVAVMLRNARSEKGWTQGQLAAELGTSQSAVARMEQGKQNLSLKMIQRLEAIFDRSI 64 >gi|206968090|ref|ZP_03229046.1| transcriptional regulator [Bacillus cereus AH1134] gi|229177505|ref|ZP_04304885.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|206737010|gb|EDZ54157.1| transcriptional regulator [Bacillus cereus AH1134] gi|228605998|gb|EEK63439.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] Length = 296 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R+ +SQ L + + Q+ K EKGV + L +SE L + F Sbjct: 6 LGITIKELRIKKNISQSDLCHGI-CSQSQISKIEKGVIYPSSILLYQLSERLGVDPNSIF 64 >gi|157373772|ref|YP_001472372.1| DNA-binding protein [Shewanella sediminis HAW-EB3] gi|157316146|gb|ABV35244.1| DNA-binding protein [Shewanella sediminis HAW-EB3] Length = 181 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP++ + I+ R ++Q +L E GI + E + S + +++ L Sbjct: 1 MANPIN----EGIKRLRAQHKLTQIELAEMAGIPRATLANMEGANSNPSISVVMKVAQAL 56 Query: 67 ESPISFF 73 + Sbjct: 57 GVTVDDL 63 >gi|330977318|gb|EGH77271.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 182 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 8/94 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-ESPISF-- 72 G+R++ R + G+SQ +L + G+T + EK S L+ +VL P+S Sbjct: 4 GERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLR---KVLGGIPMSMVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + P + + + + ++D ++L Sbjct: 61 FFSEESVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|331270832|ref|YP_004397269.1| putative DNA-binding protein [Clostridium botulinum BKT015925] gi|329127550|gb|AEB77493.1| putative DNA-binding protein [Clostridium botulinum BKT015925] Length = 197 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 14/105 (13%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMIL------GMSQEKLGECLGITFQQVQKYEKGVNRV 54 M +KK G+ ++ R +Q L + + + + E G Sbjct: 18 MALSKKK-------FGQLLKEARNFKSDIIGKRYTQRMLADDINRSQSYIGDIESGRTYP 70 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 S L I+E P+S+F + +I + + ++ +S + Sbjct: 71 SFSTLNDIAEACGVPVSYF-QDHDDINYNIDTFIKSQLNILSETE 114 >gi|198282281|ref|YP_002218602.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246802|gb|ACH82395.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 152 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R LG++Q +LG+ G++ V ++E G + L + + L + Sbjct: 8 IGDRVKKIRKRLGLTQAELGKHAGGLSKSAVHQWENGGTKPAWDALTALRKNLGINPDWV 67 Query: 74 FDVSPTVCSDISSE 87 + ++ + Sbjct: 68 MQGEGAMLQELGTP 81 >gi|111021987|ref|YP_704959.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110821517|gb|ABG96801.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 133 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI + R GMS+ +L + + Q V E+G + IS V E P+ F Sbjct: 46 NRIGVLRAERGMSRAQLAGLIDVNPQTVGALERGDHYPSLDLAFRISWVFELPVEAIF 103 >gi|94272166|ref|ZP_01292081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93450214|gb|EAT01505.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 100 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 K+++ R G++Q LG +G+ + + E G + S ++ L+ Sbjct: 6 KKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLD 56 >gi|29423763|gb|AAO73476.1| putative MBP-like protein [Sulfolobus acidocaldarius] Length = 167 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE----SPI 70 I+ R L MSQ++L + L ++ ++++E G + + + + +L PI Sbjct: 85 IKEARERLKMSQQQLAQALKVSENIIKRFESGKLKPTIQQAKQLERILGIKLLVPI 140 >gi|94314004|ref|YP_587213.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357856|gb|ABF11944.1| transcriptional regulator, XRE family with cupin sensor domain [Cupriavidus metallidurans CH34] Length = 251 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+R R LG + L E G++ + + E+G +G I + L+ + F Sbjct: 22 GKRLRGARKALGWTLAHLAELSGVSITTISRAERGQLALGYDNFAAIGKALQMDMGEMFA 81 Query: 76 VSPTVCSDISSE 87 + + Sbjct: 82 GAGETAAPFQGP 93 >gi|329910926|ref|ZP_08275406.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] gi|327546048|gb|EGF31123.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] Length = 191 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG ++ R+ ++ E L G++ + + E+ + ++ L I+ Sbjct: 13 VGATLQRMRLERDLTLEDLSRAAGVSKSMLSQIEREKANPTIAVAWRLANALGVSIA 69 >gi|320178347|gb|EFW53318.1| helix-turn-helix domain protein [Shigella boydii ATCC 9905] Length = 149 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+R +R G++ +L L + + + ++E G S L ++ +L + Sbjct: 68 INNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANILGCDPMWLL 127 Query: 75 DVSPTVCSDISSEENNVMD 93 T SEE D Sbjct: 128 TGEVTPPEQPKSEEQQHHD 146 >gi|303255696|ref|ZP_07341743.1| Cro/CI family phage transcriptional regulator [Streptococcus pneumoniae BS455] gi|302597368|gb|EFL64467.1| Cro/CI family phage transcriptional regulator [Streptococcus pneumoniae BS455] Length = 75 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R +S +++ + L I Q + KYE +++ L ++ + F F Sbjct: 6 LRAIRTNYNLSAKEVADKLNIHQQTLLKYEHDSSKIPMDLLDKLARLYNVEKDFIFLGKK 65 Query: 79 TVCSDISSE 87 + E Sbjct: 66 YELNHSLGE 74 >gi|302529084|ref|ZP_07281426.1| predicted protein [Streptomyces sp. AA4] gi|302437979|gb|EFL09795.1| predicted protein [Streptomyces sp. AA4] Length = 796 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPIS 71 +R R G++QE+L E G++ +++ E G ++ I++ L + + Sbjct: 52 LRETRRQAGLTQEQLAERSGVSVSTIRRLENGRPVDPRMGTVKLIADALGTTPA 105 >gi|302533187|ref|ZP_07285529.1| transcriptional regulatory protein [Streptomyces sp. C] gi|302442082|gb|EFL13898.1| transcriptional regulatory protein [Streptomyces sp. C] Length = 198 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 22/59 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 + ++ R G + + L G++ + + E+ +++ L I+ D Sbjct: 14 RNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLD 72 >gi|255526755|ref|ZP_05393656.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255509533|gb|EET85872.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 71 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R L +SQ++L G++ Q + E G A +++ L+ F Sbjct: 9 NRLKVARAELNISQQQLANMAGVSRQTISSIETGQYCPTAKLALILAKCLQKKFEDLF 66 >gi|254295523|ref|YP_003061545.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] gi|254044054|gb|ACT60848.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 86 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 NVG IR R+ G++Q +L + + + K E G S L + L+ + Sbjct: 9 RNVGDAIRKIRLEKGLTQTELAARVNVRQATISKLESGEPATRLSTLFDVLMALDMDL 66 >gi|271964073|ref|YP_003338269.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507248|gb|ACZ85526.1| transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 64 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G+SQ+ LGE LG++ Q + E+G ++ + F Sbjct: 5 VRELRGSAGLSQQALGERLGVSRQTINAIEQGRYDPSLPLAIRLARFFGRTVEEVF 60 >gi|218440552|ref|YP_002378881.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218173280|gb|ACK72013.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424] Length = 87 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +GK IR R + ++QE+ +G+ F V ++EKG ++ IS L+ Sbjct: 14 IGKLIRNLRQEMNLTQEQFAMMVGVVFTTVNRWEKGHANPSPMAIKMISMKLQ 66 >gi|159026724|emb|CAO89038.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 75 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + GK IR RR L +SQE L E + + + G V ++ +++ Sbjct: 4 KESLDIKHRFGKAIRRRRRELDLSQEILAEKAELHRTYISSIQLGKCNVSLENIEKLAKA 63 Query: 66 LESPISFFF 74 L+ I+ F Sbjct: 64 LDISIADLF 72 >gi|160880248|ref|YP_001559216.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428914|gb|ABX42477.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 380 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + I R G++Q++L LG+T V K+E + L I+ I Sbjct: 5 LSENIITFRRKKGITQDELATFLGVTKASVSKWETKQSYPDILLLPQIASYFNVSIDELL 64 Query: 75 DVSPTVCSD 83 P + + Sbjct: 65 GYEPQLSEE 73 >gi|120401822|ref|YP_951651.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954640|gb|ABM11645.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 176 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR +R +S +L E G++ + + E+G+ + A L I++ L + Sbjct: 18 IGSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVLY 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + + SE N V D I T + Sbjct: 78 VRAGILE---PSETNEVRDAIVTDTAI 101 >gi|73670782|ref|YP_306797.1| transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72397944|gb|AAZ72217.1| transcriptional regulator, Hth-3 family [Methanosarcina barkeri str. Fusaro] Length = 68 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++QE L + +G+ + + EKG IS L + I F Sbjct: 4 RIKEFRARHDLTQEALAKMVGVRRETIVFLEKGKYNPSLKLAYRISRCLNATIDELF 60 >gi|28901246|ref|NP_800901.1| hypothetical protein VPA1391 [Vibrio parahaemolyticus RIMD 2210633] gi|153835937|ref|ZP_01988604.1| conserved domain protein [Vibrio parahaemolyticus AQ3810] gi|260362803|ref|ZP_05775672.1| conserved domain protein [Vibrio parahaemolyticus K5030] gi|260880091|ref|ZP_05892446.1| conserved domain protein [Vibrio parahaemolyticus AN-5034] gi|260895208|ref|ZP_05903704.1| conserved domain protein [Vibrio parahaemolyticus Peru-466] gi|28809759|dbj|BAC62734.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750691|gb|EDM61436.1| conserved domain protein [Vibrio parahaemolyticus AQ3810] gi|308085564|gb|EFO35259.1| conserved domain protein [Vibrio parahaemolyticus Peru-466] gi|308091862|gb|EFO41557.1| conserved domain protein [Vibrio parahaemolyticus AN-5034] gi|308112048|gb|EFO49588.1| conserved domain protein [Vibrio parahaemolyticus K5030] Length = 68 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G +R R G+SQ+KL I V + E+G + + I+ VL+ I Sbjct: 9 GYNVRSMRKDKGISQDKLALAADIDRSYVGRIERGEVNITLEKAYQIASVLQCDI 63 >gi|77408552|ref|ZP_00785288.1| transcriptional regulator, MutR family [Streptococcus agalactiae COH1] gi|77172826|gb|EAO75959.1| transcriptional regulator, MutR family [Streptococcus agalactiae COH1] Length = 282 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +GK +R R +S L + ++ Q+ ++E+G + + SRL +I + L I Sbjct: 1 MEKELGKTLRRLRKGKKVSISSLADE-HLSKSQISRFERGESEITCSRLLNILDKLNITI 59 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + N V + + + +L Sbjct: 60 DEFVSIHSKAHTHFFILLNRVRKYCAEKNVTKLV 93 >gi|307329596|ref|ZP_07608755.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884790|gb|EFN15817.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 278 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R +SQ +L + + + E G +R + + +++ L+ P+ Sbjct: 20 VGTLLREWRDRRRLSQLELALRADSSARHISFIETGRSRPSQAMVLRLADHLDVPV 75 >gi|317053889|ref|YP_004117914.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316951884|gb|ADU71358.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 182 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 1/86 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + P+DI +R R G+S ++ G+ + + E G L + L Sbjct: 1 MTPPIDIIAAGLVRE-RQRAGLSLTEVARRAGVAKSTLSQLEAGNGNPSIETLWSLCVAL 59 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM 92 P + + I E V+ Sbjct: 60 NIPFARLMEPEVKRLQVIRKGEGMVV 85 >gi|257793053|ref|YP_003186451.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479745|gb|ACV60062.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 201 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R R+ G S +L G+ + + E G + L ++ L P S Sbjct: 19 VSNNLRALRLARGWSISELERRSGVAKGTISQLESGYGNPTVATLWSLASALSVPFSDLI 78 Query: 75 DVSPTVCS 82 + S Sbjct: 79 QTAKETES 86 >gi|227431842|ref|ZP_03913866.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352384|gb|EEJ42586.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 205 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Query: 17 KRIRLRRMILGMSQEKLGECL-------GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 R++ R G+S +KL E L IT + YE Q +++ Sbjct: 3 NRLKELRNRKGLSMKKLSEDLVKKGYFPNITDATLSNYENEKREPKLETWQKLADYFGVD 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPD 99 +++ VS + + + E+ + +FI++P+ Sbjct: 63 VAYLQGVSNIKDTTLLTFED-LSEFINSPE 91 >gi|171320839|ref|ZP_02909842.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171093917|gb|EDT39035.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 183 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R+R R G+SQ +L + G+T + E+G L+ + E + ++ FF Sbjct: 5 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 I S + + + + L Sbjct: 65 TFELVESRSIVSRRDEMPNLGNDTLAFHLVGA 96 >gi|89891794|ref|ZP_01203296.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] gi|89515949|gb|EAS18614.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] Length = 269 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R G++QE+L E I + +Q+ E G + +++I L I F Sbjct: 6 LGNYIAQLRKEKGLTQEELVELCNINVRTIQRIENGDVTPRSYTIKNILSALGKSIDDVF 65 Query: 75 DVSPTVCSDISS 86 +D+ + Sbjct: 66 KSVEKKAADLPA 77 >gi|66046048|ref|YP_235889.1| peptidase [Pseudomonas syringae pv. syringae B728a] gi|63256755|gb|AAY37851.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] Length = 216 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++L R ++Q KL E G+ + + E G + ++ L +++ + Sbjct: 6 QRLKLARAHAKITQRKLAELAGVEQPAISQMESGKT-LKSAHLVALAKACGVNADWL--- 61 Query: 77 SPTVCSDISSEENNV 91 T ++SE++NV Sbjct: 62 -ATGTGQMASEQSNV 75 >gi|21228997|ref|NP_634919.1| transcriptional regulator [Methanosarcina mazei Go1] gi|20907540|gb|AAM32591.1| transcriptional regulator [Methanosarcina mazei Go1] Length = 68 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++QE L +G+ + + EKG I+ L++ I F Sbjct: 4 RIKELRARHDLTQEALANLVGVRRETIVFLEKGKYNPSLKLACRIARSLDTTIDELF 60 >gi|314937188|ref|ZP_07844534.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] gi|313654699|gb|EFS18445.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] Length = 178 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 30/57 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +++ R+ ++Q ++ + L +T Q V ++E+G +Q +S++ + + Sbjct: 2 ISNKLKSARLAKELTQSEVAKKLYVTRQTVSRWEQGKTLPNIYVIQELSDLYDISLD 58 >gi|313891199|ref|ZP_07824818.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120562|gb|EFR43682.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 359 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I L R LGM+QEKL + L +T + K+E + L ++++ + + Sbjct: 2 IGDTIFLERTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILLAKLFDMSLDDLV 61 Query: 75 D----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQKIIELV 123 +S + S + + M+ +S D ++ + I D K +I+LV Sbjct: 62 GFQKTLSDSERSALFHQLKKEMNHMSDDDVVKKAEELSKQHISDFKTLLILIQLV 116 >gi|228950520|ref|ZP_04112670.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809156|gb|EEM55627.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 116 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 3/95 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G R++ R L MSQ+ + + ++ V E G + + IS + Sbjct: 2 IENIIGIRVKEIRNSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRETVSKISNLGNVSA 61 Query: 71 SFFFDVSP---TVCSDISSEENNVMDFISTPDGLQ 102 + +S S S + + D IS + L Sbjct: 62 DYVMGLSDYKNLNESQSSEVKTELHDMISKIEKLD 96 >gi|228999804|ref|ZP_04159377.1| hypothetical protein bmyco0003_43570 [Bacillus mycoides Rock3-17] gi|229007358|ref|ZP_04164956.1| hypothetical protein bmyco0002_42380 [Bacillus mycoides Rock1-4] gi|228753889|gb|EEM03329.1| hypothetical protein bmyco0002_42380 [Bacillus mycoides Rock1-4] gi|228759953|gb|EEM08926.1| hypothetical protein bmyco0003_43570 [Bacillus mycoides Rock3-17] Length = 73 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R MSQ LG+ + + Q + E+G I+ V P+ F + Sbjct: 5 NRVREFRAKHRMSQGDLGKVIDSSRQTISLIERGDYAPSIVLSLKIAHVFGVPVEEIFTL 64 Query: 77 SPTVCSD 83 D Sbjct: 65 VEGEKDD 71 >gi|227529915|ref|ZP_03959964.1| transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227350169|gb|EEJ40460.1| transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 64 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R +SQ +L + +G+ Q + E + ++ L++ ++ F Sbjct: 2 NRVRQFRKKQQLSQFELAKEIGVARQTISLIESDKYNPSLELCRKLAIALKTDLNSLF 59 >gi|90416630|ref|ZP_01224561.1| putative DNA-binding protein [marine gamma proteobacterium HTCC2207] gi|90331829|gb|EAS47057.1| putative DNA-binding protein [marine gamma proteobacterium HTCC2207] Length = 192 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ +P + R+ R ++ ++L G++ + + E+G + Sbjct: 1 MSNSQSDNDPASQALSSRVTALRKKNKLTLDQLAGASGVSRSMLSQIERGQANPTLTVTF 60 Query: 61 HISEVLESPISFFFDVS-PTVCSDISSEENNVMDFISTPD 99 I++ I D + + ++ E+ F + + Sbjct: 61 RIAQAFGMSIGELVDQAWQSSTIEVVHGEDKSNLFRNDKE 100 >gi|19745476|ref|NP_606612.1| hypothetical protein spyM18_0360 [Streptococcus pyogenes MGAS8232] gi|19747592|gb|AAL97111.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232] Length = 112 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 21/56 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R LG++Q + + +E + +++ I+ ++ Sbjct: 4 RIKYLRQALGLTQSAFAAKAHVHKNMIANHESQNSNPSLKQIEKIALAFNVEPAWL 59 >gi|37527794|ref|NP_931139.1| hypothetical protein plu3939 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787230|emb|CAE16311.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 371 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +RL R+ +S E++ E + T Q +Q+ E G ++ VL+ +FF Sbjct: 4 GSNLRLARLYHELSLEQVAERVNKTRQYIQRLESGFAVPTNELSNELATVLQVTPAFF 61 >gi|88854610|ref|ZP_01129277.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] gi|88816418|gb|EAR26273.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] Length = 73 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 8/74 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV K+ N IR R G++Q +L +G+T Q + E+G Sbjct: 1 MVKPTKVTN--------NIRALREAEGLTQAELARRIGVTRQTLIAIEQGRYSPTLELAF 52 Query: 61 HISEVLESPISFFF 74 IS + + F Sbjct: 53 QISRNFGTGLDDVF 66 >gi|330685264|gb|EGG96925.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 189 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +I+L R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNISHQIKLCRENKGYSQEYLAEKLYVSRQTISNWENERSYPDVHNLIMMCELFNVSLDD 60 Query: 73 FFDVSPTVCS 82 + Sbjct: 61 LVQGEIHMEQ 70 >gi|329115880|ref|ZP_08244597.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906285|gb|EGE53199.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 108 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS 71 ++ RI R+ ++QE L E G+ + + E+G N + L I LE + Sbjct: 5 KSISNRIYELRLSKHLTQETLAEKAGMDVNALGRIERGQNYNIKVETLDKIINALEVDYN 64 Query: 72 FFFDVSPTVCS 82 FF + Sbjct: 65 SFFSFQDQENN 75 >gi|325289268|ref|YP_004265449.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324964669|gb|ADY55448.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 67 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + RI+ R M QE L +G+ + + E G + I++V + Sbjct: 1 MIIKTRIKEYRAKHNMKQEDLARLVGVRRETIYHLENGKYNPSLALAYLIAKVFKVS 57 >gi|302535844|ref|ZP_07288186.1| DNA-binding protein [Streptomyces sp. C] gi|302444739|gb|EFL16555.1| DNA-binding protein [Streptomyces sp. C] Length = 145 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 37/85 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 N+G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L Sbjct: 14 NLGEYLREQRRQAQLSLRQLADAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETL 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 + + + E +S P Sbjct: 74 YVQAGILDERDRDEVETRAVILSDP 98 >gi|292491245|ref|YP_003526684.1| hypothetical protein Nhal_1128 [Nitrosococcus halophilus Nc4] gi|291579840|gb|ADE14297.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 128 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I++ R G++Q L E G++ + EKG L+ I++ L I D+ Sbjct: 65 IKVWRTYRGLTQHDLAEQAGLSQSYLAMMEKGEREGTVKALKRIAKALNVDIDDLVDMHD 124 Query: 79 TVCS 82 + Sbjct: 125 EEPA 128 >gi|295690628|ref|YP_003594321.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432531|gb|ADG11703.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 99 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+ ++ R G+SQ +L +G + + + E G R+ R + + L P F Sbjct: 21 GRWLKEAREAAGLSQRQLAAKVGADYYTFISQLETGRGRIPPDRYREWARALNVPERTF 79 >gi|239637276|ref|ZP_04678263.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] gi|239597113|gb|EEQ79623.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] Length = 189 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +I+L R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNISHQIKLCRENKGYSQEYLAEKLYVSRQTISNWENERSYPDVHNLIMMCELFNVSLDD 60 Query: 73 FFDVSPTVCS 82 + Sbjct: 61 LVQGEIHMEQ 70 >gi|162148230|ref|YP_001602691.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786807|emb|CAP56390.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 28/74 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R +SQ+ L LGI+ + E V AS L ++ L+ I Sbjct: 6 IGYIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEALS 65 Query: 75 DVSPTVCSDISSEE 88 V + E Sbjct: 66 GVDEQRLRGLLHEA 79 >gi|153939134|ref|YP_001389968.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152935030|gb|ABS40528.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318053|gb|ADF98430.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 130 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLTALGDFFEISLD 59 >gi|167034149|ref|YP_001669380.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860637|gb|ABY99044.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 271 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R +SQ L G++ + + E G R S L + L +P+ + Sbjct: 18 GQHLRHLRRQASLSQLDLALLAGLSQRHLSCVETGRARASPSTLHALLSALGAPL----E 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + V + P+ L L Sbjct: 74 LCNEVFVAAGYAPRYAASPLDAPE-LALVHA 103 >gi|222053496|ref|YP_002535858.1| plasmid maintenance system antidote protein, XRE family [Geobacter sp. FRC-32] gi|221562785|gb|ACM18757.1| plasmid maintenance system antidote protein, XRE family [Geobacter sp. FRC-32] Length = 116 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +R R G++Q++L E GI + + E G +G R + ++E L Sbjct: 61 LRAYRNREGLTQKRLAEMTGIPQHHISEMENGKRSIGKERAKRLAEALNCD 111 >gi|16080420|ref|NP_391247.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str. 168] gi|221311317|ref|ZP_03593164.1| hypothetical protein Bsubs1_18271 [Bacillus subtilis subsp. subtilis str. 168] gi|221315644|ref|ZP_03597449.1| hypothetical protein BsubsN3_18187 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320560|ref|ZP_03601854.1| hypothetical protein BsubsJ_18155 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324844|ref|ZP_03606138.1| hypothetical protein BsubsS_18306 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342185|sp|O32237|RGHRB_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator rghRB gi|2635880|emb|CAB15372.1| putative transcriptional repressor [Bacillus subtilis subsp. subtilis str. 168] Length = 139 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G+++R R ++ +L GI+ + K E G + ++ ++ VL+ P + Sbjct: 5 GQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVP----Y 60 Query: 75 DVSPTVCSDISSEENNVMD 93 + I + + + Sbjct: 61 ENLMAAAGHIQAFPEEIRE 79 >gi|328956459|ref|YP_004373845.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4] gi|328672783|gb|AEB28829.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4] Length = 183 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ +R R ++QE + + L +T Q V ++E+ LQ +S + I Sbjct: 1 MSLGQSLREARAAKDLTQEDIAKVLYVTRQTVSRWEQNKTLPNIFVLQELSSLYGLSID- 59 Query: 73 FFDVSPTVCSDISSEENNV 91 ++ I +E + Sbjct: 60 --ELISETKKSIQKKEEEI 76 >gi|225387376|ref|ZP_03757140.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM 15981] gi|225046508|gb|EEG56754.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM 15981] Length = 1690 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRV-GASRL-QHISEV 65 D + ++I+ R+ G++Q L E +G+ QV ++E KG + RL + ++++ Sbjct: 27 DPELAEQIKALRIARGLTQNDLAERMGVPQSQVSRWENKGGCEIESLERLCKALAQI 83 >gi|223986918|ref|ZP_03636894.1| hypothetical protein HOLDEFILI_04217 [Holdemania filiformis DSM 12042] gi|223961112|gb|EEF65648.1| hypothetical protein HOLDEFILI_04217 [Holdemania filiformis DSM 12042] Length = 86 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R++ R +SQ +L + + +T Q + E G I+ + I F F Sbjct: 23 NRVQELRKQRRLSQSELADAVEVTRQTIISLENGKYNASLMLAHKIARYFDLTIEEVFLF 82 Query: 75 DVSP 78 + Sbjct: 83 EEDE 86 >gi|163838971|ref|YP_001623376.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952447|gb|ABY21962.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 191 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN + +G RIR R ++ E + E G+T + + E+ + L + EVL Sbjct: 8 PNQGPVQIGSRIRAARQAQRLTIEHVAEATGLTKGFLSRVERDFTSPSVASLVTLCEVLA 67 Query: 68 SPISFFF 74 I F Sbjct: 68 ISIGDLF 74 >gi|148927476|ref|ZP_01810976.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] gi|147887172|gb|EDK72640.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] Length = 92 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +GK I+ R+ G +Q ++ + LG + + + E G + L IS+VL S I Sbjct: 9 IGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQNLSMEMLARISDVLNSEI 64 >gi|172062153|ref|YP_001809804.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994670|gb|ACB65588.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 203 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCS 82 + Sbjct: 86 SQPKAAET 93 >gi|52079411|ref|YP_078202.1| hypothetical protein BL02899 [Bacillus licheniformis ATCC 14580] gi|52784771|ref|YP_090600.1| hypothetical protein BLi00999 [Bacillus licheniformis ATCC 14580] gi|319646808|ref|ZP_08001037.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] gi|52002622|gb|AAU22564.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52347273|gb|AAU39907.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317391396|gb|EFV72194.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 65 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++L R+ ++Q +L E + +T Q + EK I++ L+ + F Sbjct: 3 NRVKLARIEKSLTQAQLAERVNVTRQTIGLIEKNKYNPTLQLCIAIAKALDKTLDDLF 60 >gi|21910237|ref|NP_664505.1| putative immunity repressor protein - phage associated [Streptococcus pyogenes MGAS315] gi|28876166|ref|NP_795393.1| putaive immunity repressor protein [Streptococcus pyogenes phage 315.1] gi|28896063|ref|NP_802413.1| repressor protein [Streptococcus pyogenes SSI-1] gi|21904431|gb|AAM79308.1| putaive immunity repressor protein - phage-associated [Streptococcus pyogenes phage 315.1] gi|28811313|dbj|BAC64246.1| putative repressor protein [Streptococcus pyogenes SSI-1] Length = 112 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 21/56 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R LG++Q I + +E + +++ I+ ++ Sbjct: 4 RIKYLRQALGLTQSAFAAKAHIHKNMIANHESQNSNPSLKQIEKIALAFNVEPAWL 59 >gi|16519699|ref|NP_443819.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] gi|2495432|sp|P55409|Y4DJ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4dJ gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a gi|2182353|gb|AAB91639.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] Length = 77 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG R G++QE++ G + Q + E+G L +++ L Sbjct: 5 KLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVS 61 >gi|313677003|ref|YP_004054999.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312943701|gb|ADR22891.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 283 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V N K P +G +I+ R G++QE+L E + + +Q+ E G + ++ Sbjct: 6 VYNMKQP-----ELGHKIQNWRKAQGLTQEELVEKCNLNVRTLQRIEAGEVLPRSYTVKS 60 Query: 62 ISEVLESPIS 71 I EVL+ S Sbjct: 61 ILEVLKVDFS 70 >gi|326775562|ref|ZP_08234827.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326655895|gb|EGE40741.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 75 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G R+R+RRM L M+QE+L E I +Q+ E G S L I+ L + Sbjct: 14 RAIGDRVRVRRMHLDMTQERLAETAEIDRSTLQRIEYGE-EAKISHLLLIARALRVHV 70 >gi|226325033|ref|ZP_03800551.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758] gi|225206381|gb|EEG88735.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758] Length = 112 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 31/70 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + R M+Q+ L + L ++ + V K+E+G + + L I+++L ++ Sbjct: 8 LAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADILGITVTELLQGEK 67 Query: 79 TVCSDISSEE 88 + + + Sbjct: 68 LKENKTLNSD 77 >gi|187924674|ref|YP_001896316.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715868|gb|ACD17092.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia phytofirmans PsJN] Length = 374 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 17/125 (13%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+R+RL R GM+++ L G++ + + E GV L+ I+ L Sbjct: 82 DPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQIAGTLNC 141 Query: 69 PISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRY-------FIQIDDVKVRQK 118 ++ V D ++ + + + D L R F Q R+ Sbjct: 142 SLA-------EVIGDETTASAEWLLIRELLQGRDQAALQRARVALAEMFAQAPRDPHRKD 194 Query: 119 IIELV 123 I L+ Sbjct: 195 RIALI 199 >gi|153954548|ref|YP_001395313.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347406|gb|EDK33942.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 71 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +G++QEKL + L ++ Q + E G IS+ I F Sbjct: 3 NKIEELRKRIGLNQEKLAKALKVSRQTISSIETGKYNPSLELAFAISDYFGKSIEEIF 60 >gi|161525328|ref|YP_001580340.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160342757|gb|ABX15843.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 224 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 28/73 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 33 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 92 Query: 71 SFFFDVSPTVCSD 83 + F + Sbjct: 93 AGLFGGDDGAPAQ 105 >gi|94264958|ref|ZP_01288729.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|94265765|ref|ZP_01289500.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453700|gb|EAT04081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93454561|gb|EAT04839.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 101 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 24/51 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 K+++ R G++Q LG +G+ + + E G + S ++ L+ Sbjct: 7 KKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLD 57 >gi|304320305|ref|YP_003853948.1| putative transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303299207|gb|ADM08806.1| putative transcriptional regulator [Parvularcula bermudensis HTCC2503] Length = 79 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V + +R RR LG+SQ+++G + + E+ V L I+EVL + Sbjct: 7 VARNVRKRRAELGLSQDEVGARADSSGNYIGMIERSETSVSIDMLADIAEVLGVSLRDLV 66 Query: 75 DVSPTVCSDISS 86 D T S+ Sbjct: 67 DPDWTGVEHGSA 78 >gi|115359716|ref|YP_776854.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285004|gb|ABI90520.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] Length = 203 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCS 82 + Sbjct: 86 SQPKAAET 93 >gi|94313728|ref|YP_586937.1| putative DNA-binding transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357580|gb|ABF11668.1| putative DNA-binding transcriptional regulator, Helix-turn-helix motif [Cupriavidus metallidurans CH34] Length = 203 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 21 VGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 79 >gi|310816433|ref|YP_003964397.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308755168|gb|ADO43097.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 73 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG R G++QE + G + Q + E+G L +++ L Sbjct: 5 RLVGGNFARLRQAKGLTQEDVEARSGFSQQYISGLERGQRNPTIITLYELAQALGVS 61 >gi|302546828|ref|ZP_07299170.1| putative helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302464446|gb|EFL27539.1| putative helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 102 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 G ++ R GMSQ L LG++ ++ + E G + + L Sbjct: 25 GAFLKRARRSRGMSQRALARELGVSQARIAQIENGASTPQIDTMAAYITALG 76 >gi|258652289|ref|YP_003201445.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555514|gb|ACV78456.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 104 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 18/89 (20%) Query: 1 MVGNKKIPNP-VDINV-----------GKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 MVG + NP D V G + R +G+SQE++ GI+ +K E Sbjct: 1 MVGPSRTANPGPDQTVRATWARYTRDLGINLARAREAIGLSQERVAHAAGISTFTYRKLE 60 Query: 49 KGVNRVGAS------RLQHISEVLESPIS 71 KG + G+S L ++EVLE+ ++ Sbjct: 61 KGESNPGSSANPRLRTLVALAEVLETDVN 89 >gi|77411693|ref|ZP_00788032.1| transcriptional regulator, MutR family [Streptococcus agalactiae CJB111] gi|77162265|gb|EAO73237.1| transcriptional regulator, MutR family [Streptococcus agalactiae CJB111] Length = 282 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +GK +R R +S L + ++ Q+ ++E+G + + SRL +I + L I Sbjct: 1 MEKELGKTLRRLRKGKKVSISSLADE-HLSKSQISRFERGESEITCSRLLNILDKLNITI 59 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + N V + + + +L Sbjct: 60 DEFVSIHSKAHTHFFILLNRVRKYCAEKNVTKLV 93 >gi|42779585|ref|NP_976832.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47567216|ref|ZP_00237930.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|42735501|gb|AAS39440.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47556059|gb|EAL14396.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 83 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +V +I R +SQ L + ++ Q + E + ++EVL + + Sbjct: 18 KDVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDK 77 Query: 73 FF 74 F Sbjct: 78 LF 79 >gi|330467550|ref|YP_004405293.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810521|gb|AEB44693.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 379 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 13/93 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA-SRLQHISEVLESPISFF 73 +G+R+ R GMSQ+ + LG + V K E+GV R+ S ++ I+EVL + Sbjct: 12 LGRRVAELRAHRGMSQQAFADRLGKSKSWVDKVERGVRRLDRYSVIRDIAEVLRLDPTML 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + P ++ EN G+ R Sbjct: 72 --LGPRQPPTPAAAEN----------GIDAVRA 92 >gi|307946156|ref|ZP_07661491.1| putative toxin-antitoxin system, antitoxin component, Xre family [Roseibium sp. TrichSKD4] gi|307769820|gb|EFO29046.1| putative toxin-antitoxin system, antitoxin component, Xre family [Roseibium sp. TrichSKD4] Length = 258 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS---F 72 G+ +R R L +SQ L + L T + + E G + + IS VL PIS Sbjct: 12 GQALRALRRELNISQSALADRLSSTQRHLSFLETGRAQPSTQMVDRISRVLGLPISKRLS 71 Query: 73 FFD----VSPTVCSDISSEE 88 ++ SP D SEE Sbjct: 72 LYEAAGLTSPYKRRDFGSEE 91 >gi|269215841|ref|ZP_06159695.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130791|gb|EEZ61867.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 72 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ L +G T Q + E G + I L ++ F Sbjct: 8 RMKAARAARDMSQGDLAAAVGATRQTIGLIEAGGYNPTLNLCIAICRALGCTLNDLF 64 >gi|290892233|ref|ZP_06555229.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|290558356|gb|EFD91874.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] Length = 423 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 1/99 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++ + + + + I+ + E G+ L HI++ LE P Sbjct: 4 IGLRIKNIRKEKQLTLKDVAQGI-ISVPYLANIENGIKIASLETLIHIAKRLEVPEQILL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ E + + + + + +++ I + Sbjct: 63 ISEEESNKELLKEMDAIFELLVFSNTVEMESRLNSIAEN 101 >gi|305681668|ref|ZP_07404474.1| bacteriophage CI repressor protein [Corynebacterium matruchotii ATCC 14266] gi|305658828|gb|EFM48329.1| bacteriophage CI repressor protein [Corynebacterium matruchotii ATCC 14266] Length = 95 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R G+ Q +L E G++ + V +E G S L I+ + + Sbjct: 18 RIQRARRHAGLEQGQLAELAGVSRKSVSNWEIGKTVPRRSALIAIAFATGVNLYWL 73 >gi|229028239|ref|ZP_04184378.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271] gi|228733075|gb|EEL83918.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271] Length = 83 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 20 VKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|291288546|ref|YP_003505362.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885706|gb|ADD69406.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 79 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+ I+ R+ ++Q +L E G+ + E G R L I L + Sbjct: 11 LGQAIKAARLEAKLTQSQLAEKTGLRQGTISDIENGTQRAKLDTLFIILSALNLDM 66 >gi|159898132|ref|YP_001544379.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891171|gb|ABX04251.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 802 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + G+++R R ++Q L E +G + ++K E R S ++ +L+ Sbjct: 5 RSFGQQLRDYRHQRQLTQAALAEEVGCAIESIRKMEANRQRPSRSLAARLARILQ 59 >gi|117924139|ref|YP_864756.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117607895|gb|ABK43350.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] Length = 183 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G RIR R ++Q+ L + I + EK + + I+ L I Sbjct: 7 GMRIRQLRSQRKLTQQALADMAEIPRATLATVEKDDANPSLAVVYKIARALGLSID 62 >gi|328551781|gb|AEB22273.1| putative transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328910041|gb|AEB61637.1| Uncharacterized HTH-type transcriptional regulator yazB [Bacillus amyloliquefaciens LL3] Length = 75 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G+RIR R + G +QE + +GI+ + + E+G A ++ ++ L Sbjct: 7 GRRIRAFRKLKGYTQEGFAKAIGISVSILGEIERGNRLPSAVIIRDAADALNIS 60 >gi|326693522|ref|ZP_08230527.1| HTH-type transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 137 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 34/78 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+L R ++Q++L L ++ Q V +E S L +S++ + + Sbjct: 1 MLISEKIKLLRQDNRLTQKELALKLHVSAQAVSNWELNKGFPDISNLIMLSDLFDITLDS 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + ++ + Sbjct: 61 LIKEDADMKEQLLQDKAS 78 >gi|325510877|gb|ADZ22513.1| Protein containing transcriptional regulator domain [Clostridium acetobutylicum EA 2018] Length = 345 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + IR R ++QE++ L I+ V K+E G+ + L ++ +L+ ++ Sbjct: 3 ISEIIRSHRKKENLTQEQVANYLNISTPAVNKWENGITYPDITLLAPLARILKIDVNTLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + ++ + I +G Q + F + D Sbjct: 63 AFNEELTEKEVNKLGRSVGEIVEKEGYQ--KAFEKGSD 98 >gi|325261695|ref|ZP_08128433.1| HTH DNA-binding protein [Clostridium sp. D5] gi|324033149|gb|EGB94426.1| HTH DNA-binding protein [Clostridium sp. D5] Length = 71 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R ++Q +L + + +T Q + E G I++ I F Sbjct: 3 NKIQQLRKERRITQSELADAVEVTRQTIISLENGRYNASLILAHKIAQYFGVNIEDIF 60 >gi|312890498|ref|ZP_07750034.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296956|gb|EFQ74089.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 66 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R+ R I ++Q +L + +G++ Q + E I+ V P+ F + Sbjct: 5 LRIERAIKNITQAELADLIGVSRQTINTIESNKYVPSTVLALKIARVFGKPVEDIFILED 64 Query: 79 T 79 T Sbjct: 65 T 65 >gi|259416970|ref|ZP_05740890.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259348409|gb|EEW60186.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 462 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/133 (10%), Positives = 49/133 (36%), Gaps = 13/133 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R +G++Q+ LG++ + + E V + + +++ ++ Sbjct: 6 LYAGAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTE 65 Query: 73 FFDVSPT----------VCSDISSEENNVMDF-ISTPDGLQLNRYFIQIDDV--KVRQKI 119 + + + D ++ + L R F+ + + +++ Sbjct: 66 LSSGDSERLISDMREAMADPVFADDVPPLADLRLTASNAPALARAFLSLHRAYRQTHERL 125 Query: 120 IELVRSIVSSEKK 132 L ++ ++ + Sbjct: 126 ASLDEALGRADAR 138 >gi|221214075|ref|ZP_03587048.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221166252|gb|EED98725.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 205 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 28/73 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 14 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 73 Query: 71 SFFFDVSPTVCSD 83 + F + Sbjct: 74 AGLFGGDDGAPAQ 86 >gi|194098342|ref|YP_002001400.1| Putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|193933632|gb|ACF29456.1| Putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|317164047|gb|ADV07588.1| Putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 116 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 9/119 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R+ LG++Q + E G + + K+E+G NR + +L S++ I + Sbjct: 1 MKEERIKLGLNQAEAAEKCGFSREMWGKWERGENRPSSEKLFSFSKI-GIDIDYVMHGRR 59 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + SE + + +L F Q+ R+++ + + EKK +T Sbjct: 60 GETAAMPSES-------LSAEEKELLALFRQLGSGS-RKELADYAAFKLVVEKKAQTAL 110 >gi|257894935|ref|ZP_05674588.1| phage CI repressor [Enterococcus faecium 1,231,408] gi|294620540|ref|ZP_06699842.1| Transcriptional regulator, xre family [Enterococcus faecium U0317] gi|121309458|dbj|BAF44068.1| hypothetical protein [Enterococcus faecium] gi|257831314|gb|EEV57921.1| phage CI repressor [Enterococcus faecium 1,231,408] gi|291599794|gb|EFF30797.1| Transcriptional regulator, xre family [Enterococcus faecium U0317] Length = 105 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + K I+ +R+ ++QE L E L ++ + + +E G L +++ + + Sbjct: 1 MTISKVIKQKRIEKQLTQEDLAEMLLVSKKTISNWENGRTIPDTENLIQFAKLFDLSLD 59 >gi|126698982|ref|YP_001087879.1| putative phage regulatory protein [Clostridium difficile 630] gi|255306343|ref|ZP_05350514.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|115250419|emb|CAJ68241.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 132 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 19/130 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R ++Q KL + L F+ + KYE G + L I++ + Sbjct: 4 LGKRIAYLRNSKKLTQRKLMDIL--KFENLGKYETGDRKPNCDILMSIADYFNVTTDWLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V + S +E + ++ + + ++ I+ L R + +K Sbjct: 62 YGKEKVNVNSSVKE--------DKED------YLHVTNDEM--TILNLYRQLNERDKIKI 105 Query: 135 T-IEEECMVE 143 I E + E Sbjct: 106 EGILELKISE 115 >gi|15896711|ref|NP_350060.1| transcriptional regulator domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15026564|gb|AAK81400.1|AE007845_1 Protein containing transcriptional regulator domain [Clostridium acetobutylicum ATCC 824] Length = 345 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + IR R ++QE++ L I+ V K+E G+ + L ++ +L+ ++ Sbjct: 3 ISEIIRSHRKKENLTQEQVANYLNISTPAVNKWENGITYPDITLLAPLARILKIDVNTLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + ++ + I +G Q + F + D Sbjct: 63 AFNEELTEKEVNKLGRSVGEIVEKEGYQ--KAFEKGSD 98 >gi|85708592|ref|ZP_01039658.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] gi|85690126|gb|EAQ30129.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] Length = 64 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ +L L ++ Q V E G + I+ + E I FD Sbjct: 3 NRLKVLRAERDWSQAELAGRLDVSRQAVNAIETGKHDPSLPLAFRIARLFEMGIEEIFDD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|251811353|ref|ZP_04825826.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|251805102|gb|EES57759.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] Length = 189 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +NV +I+ R G SQE L E + ++ Q + +E + +L + ++ + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHKLLIMCQLFKI 56 >gi|154501529|ref|ZP_02039230.1| hypothetical protein BACCAP_04882 [Bacteroides capillosus ATCC 29799] gi|150269783|gb|EDM97327.1| hypothetical protein BACCAP_04882 [Bacteroides capillosus ATCC 29799] Length = 106 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 +G+R+R R G++ EKL E I +++ E G + L + F Sbjct: 6 LGQRLRQARKDKGLTSEKLSELCSINATYLRQIEAGTKVPSLPVFVSLCRELGTHPDFLL 65 Query: 74 FDVSPTVCSDISSEENNVMD 93 D P + + SE ++++ Sbjct: 66 MDSLPGIGIEEYSELSSLLQ 85 >gi|91216775|ref|ZP_01253739.1| transcriptional regulator, XRE family protein [Psychroflexus torquis ATCC 700755] gi|91184936|gb|EAS71315.1| transcriptional regulator, XRE family protein [Psychroflexus torquis ATCC 700755] Length = 102 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I+ R ++Q +LGE +G+ Q+ K E + + + + L + I+F Sbjct: 39 IGNAIKQARKERNLTQTQLGELVGVQKSQISKLENHLTDARFETILKVFKALNAKINF 96 >gi|54298059|ref|YP_124428.1| hypothetical protein lpp2116 [Legionella pneumophila str. Paris] gi|53751844|emb|CAH13268.1| hypothetical protein lpp2116 [Legionella pneumophila str. Paris] Length = 86 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +G +IR R G SQE L + + + E+G + L I+ +L + Sbjct: 9 IKIGDQIRTIRSSKGFSQEGLAAAATLGRTYMGRVERGEQNISIQNLIKIAFILNVNVG 67 >gi|37528293|ref|NP_931638.1| hypothetical protein plu4472 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787731|emb|CAE16844.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 86 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G+SQE+LG GI ++ +YE+G++ + ++ V+ P +F Sbjct: 5 RLKAARLKAGLSQERLGILAGIDEATASTRMNQYERGIHTPDFALACRLASVMGIPACYF 64 Query: 74 FDVSPTVCSDISSEEN 89 + V + I N Sbjct: 65 YVVEDDLAEIILEYAN 80 >gi|115522503|ref|YP_779414.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516450|gb|ABJ04434.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris BisA53] Length = 305 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R + GMS++ L + GI+ + + + E G V L+ +S+ L + Sbjct: 14 QLGQRVRTMRGLRGMSRKVLAKTSGISERYIAQLESGKGNVSIVLLRRVSQALGTQPEDL 73 Query: 74 FDVSPTVCS 82 V Sbjct: 74 IPAPDPVAD 82 >gi|312870364|ref|ZP_07730489.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311094065|gb|EFQ52384.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 214 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 32/76 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R +Q+++ LG++ + + +E G + L +S++ + Sbjct: 5 EKIKQYRAHNDWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYHVSLDDLLRE 64 Query: 77 SPTVCSDISSEENNVM 92 + ++ E ++ Sbjct: 65 DHEMINNYKQEHASLA 80 >gi|310826855|ref|YP_003959212.1| hypothetical protein ELI_1263 [Eubacterium limosum KIST612] gi|308738589|gb|ADO36249.1| hypothetical protein ELI_1263 [Eubacterium limosum KIST612] Length = 124 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R L M+Q G +G+ + YE G + + I + ++ Sbjct: 3 NRIKSLRKNLNMNQTDFGSKIGLKQTTIAGYETGSREPNDAVILSICKEFNVNENWLRSG 62 Query: 77 SPTVCSDISSEENNVMDFIST 97 + + +++ + DFI Sbjct: 63 VGEMFNK-RTKDQKIADFIGD 82 >gi|307286630|ref|ZP_07566720.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306502259|gb|EFM71541.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315152691|gb|EFT96707.1| helix-turn-helix protein [Enterococcus faecalis TX0031] Length = 70 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R +G+SQ +L + +T Q + ++ G +++ +SE+L I+ F Sbjct: 5 SNLSRYREEIGLSQTELARKMNVTQQCISSWQTGRTIPKPYQMKMLSEILSVSINELF 62 >gi|260597934|ref|YP_003210505.1| hypothetical protein CTU_21420 [Cronobacter turicensis z3032] gi|260217111|emb|CBA30892.1| hypothetical protein CTU_21420 [Cronobacter turicensis z3032] Length = 199 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 36/100 (36%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + +R++ R ++ + L G++ + + EK + L Sbjct: 8 MTEPGADIDSLSVALAQRLKSWRKEHNVTLDTLSRRAGVSKGMLVELEKAAANPSIAILC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 I+ L ++ DV+ + + + + G Sbjct: 68 KIAAALGLSVADLLDVASQPAARLIEASQIPVLWTGDSGG 107 >gi|257877810|ref|ZP_05657463.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811976|gb|EEV40796.1| predicted protein [Enterococcus casseliflavus EC20] Length = 166 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ R ++Q L E L ++ + + K+E G + I+E L+ + Sbjct: 12 KLKEYRKKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISL 64 >gi|197106670|ref|YP_002132047.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196480090|gb|ACG79618.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 479 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 10 PVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P D +G R++ R LG++Q ++ E LG++ + E+ V A L ++E + Sbjct: 5 PTDRKLFLGARLKRLRRDLGLTQTRMAEDLGVSPSYLNLLERNQRPVTAQVLLRLAEAYD 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKIIEL 122 D+ S+ ++ + S L ++ + V + I+ L Sbjct: 65 ------LDLKTLSSDPESASATDLAEVFSDQMFRDLGVARHEVAEVADSAPGVSEAIVRL 118 Query: 123 VRS 125 R+ Sbjct: 119 YRA 121 >gi|171317225|ref|ZP_02906424.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171097600|gb|EDT42435.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 203 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCS 82 + Sbjct: 86 SQPKAAET 93 >gi|160940976|ref|ZP_02088315.1| hypothetical protein CLOBOL_05870 [Clostridium bolteae ATCC BAA-613] gi|158436066|gb|EDP13833.1| hypothetical protein CLOBOL_05870 [Clostridium bolteae ATCC BAA-613] Length = 66 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFFD 75 RI+ R ++QE+L LG+T Q + E G IS I F F+ Sbjct: 4 RIQELRKQNKVTQEELALALGVTRQTIISLENGKYNASLQLAFKISRFFGKSIEDIFLFE 63 Query: 76 VSP 78 Sbjct: 64 EEE 66 >gi|27311197|ref|NP_758895.1| ORF2 [Vibrio phage VHML] gi|26891717|gb|AAN12329.1| ORF2 [Vibrio phage VHML] Length = 122 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 28/50 (56%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 I+ RR+ ++Q++L + +G++ + Q+ E GV + S+ I + L Sbjct: 10 IKNRRVDANLTQKELADQVGMSEKTYQRLESGVADMKISQYYSILKALNI 59 >gi|34496365|ref|NP_900580.1| hypothetical protein CV_0910 [Chromobacterium violaceum ATCC 12472] gi|34102218|gb|AAQ58584.1| hypothetical protein CV_0910 [Chromobacterium violaceum ATCC 12472] Length = 167 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ G SQ++L + G++ + +Q+ E+G L+ ++ V E F +++ Sbjct: 3 IQKLRLQRGWSQQQLADLSGLSVRTIQRIERG-QGASVESLKSLASVFEID---FSELNK 58 Query: 79 TVCSDISSEENNVMDFISTPD 99 + + + ++ + Sbjct: 59 EPAMMDPTTPDAIAAPAASRE 79 >gi|11499219|ref|NP_070456.1| repressor protein [Archaeoglobus fulgidus DSM 4304] gi|3219982|sp|O28646|Y1627_ARCFU RecName: Full=Uncharacterized HTH-type transcriptional regulator AF_1627 gi|2648932|gb|AAB89623.1| repressor protein [Archaeoglobus fulgidus DSM 4304] Length = 71 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R M+QE+L + +G+ + + EKG I+ V + I F Sbjct: 4 RIKEFRAKFNMTQEELAKRVGVRRETIVFLEKGKYNPSLKLAYKIARVFNAKIEDIFIFD 63 Query: 78 PTV 80 Sbjct: 64 EEE 66 >gi|328948817|ref|YP_004366154.1| mobile mystery protein A [Treponema succinifaciens DSM 2489] gi|328449141|gb|AEB14857.1| mobile mystery protein A [Treponema succinifaciens DSM 2489] Length = 146 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R +GM+ +L LG+T ++ K E + + S ++ +E + ++F Sbjct: 32 IKTVREAIGMTVSQLAARLGVTQPRITKMESNEDNLKLSTMKKAAEAMNCEFVYYF 87 >gi|312889566|ref|ZP_07749116.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297914|gb|EFQ75033.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 83 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I GKR++ R ++ K+ + + +Q+YE G + L +++ LE Sbjct: 11 IQFGKRLKYLRQSKNLTYRKMALLCNVEYADIQRYETGKVNITLLSLGELAKALEVDP 68 >gi|300855118|ref|YP_003780102.1| hypothetical protein CLJU_c19380 [Clostridium ljungdahlii DSM 13528] gi|300435233|gb|ADK15000.1| conserved protein with HTH domain [Clostridium ljungdahlii DSM 13528] Length = 67 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R + M Q +L E +G+ + + E G I++V + + F Sbjct: 7 KVKEYREKMNMKQSELAELIGVRRETIVHLENGRYNPSLKLAMDIAKVFNTSVEELFKFE 66 Query: 78 P 78 Sbjct: 67 D 67 >gi|296314733|ref|ZP_06864674.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC 43768] gi|296838467|gb|EFH22405.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC 43768] Length = 81 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + PNP + + +R R + +SQE+L ++ + + E+G V + Sbjct: 1 MEKPTTPNPYRLIFAQNMRQVRRLKELSQEELAFSARVSKTYISEIERGSRSVSIDVMGQ 60 Query: 62 ISEVLESPI 70 I++ L P+ Sbjct: 61 IADALGMPL 69 >gi|229166643|ref|ZP_04294395.1| Transcriptional regulator, Xre [Bacillus cereus AH621] gi|228616897|gb|EEK73970.1| Transcriptional regulator, Xre [Bacillus cereus AH621] Length = 404 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+ L SF Sbjct: 4 LGEKIKTLRKEKKLTQTELAGS-ELTKSMLSQIENGKATPSMKALQYIANKLGCETSFLL 62 Query: 75 DVSPTVCSDI 84 + ++ Sbjct: 63 EEDDVEIVEL 72 >gi|227509640|ref|ZP_03939689.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191002|gb|EEI71069.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 198 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R R+ G S KL E G++ + + E + + I L P + Sbjct: 17 VSTNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVPYTALL 76 Query: 75 DV 76 + Sbjct: 77 EG 78 >gi|254518788|ref|ZP_05130844.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226912537|gb|EEH97738.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 78 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R ILG++QE+LG+ +G++ Q + E I++V S I F F Sbjct: 3 NKLQQFREILGLTQEQLGKLVGVSRQAINAIETEKFEPYIWLAYEIAKVFRSNIEEVFLF 62 Query: 75 DVSP 78 + S Sbjct: 63 EESE 66 >gi|220903711|ref|YP_002479023.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868010|gb|ACL48345.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 215 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +R R+ G+SQE+L G+ + E+ N+ + L ISE L Sbjct: 145 LRTLRVEAGLSQEQLAAQCGMDRSAISLLERQKNQPSLASLVLISEALG 193 >gi|149174410|ref|ZP_01853036.1| transciptional regulator [Planctomyces maris DSM 8797] gi|148846520|gb|EDL60857.1| transciptional regulator [Planctomyces maris DSM 8797] Length = 75 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 17 KRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +IR R M+Q+ L +G+T Q + E G + I+ + P+ F Sbjct: 11 NQIRRFRFEHDEMTQQMLASHVGVTRQTIIALESGKYSPSLALALRIARTFDVPVEEIFQ 70 Query: 76 VSPTV 80 ++ Sbjct: 71 LTDES 75 >gi|170735407|ref|YP_001774521.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821445|gb|ACA96026.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 81 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +R RR+ G+SQE L GI + + E+G + L I++ L S Sbjct: 17 IGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPS 73 >gi|75759185|ref|ZP_00739288.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899110|ref|ZP_04063382.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL 4222] gi|228906175|ref|ZP_04070064.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL 200] gi|228937680|ref|ZP_04100316.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228950943|ref|ZP_04113064.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956851|ref|ZP_04118636.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228970568|ref|ZP_04131218.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977138|ref|ZP_04137539.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis Bt407] gi|229077745|ref|ZP_04210374.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2] gi|229125885|ref|ZP_04254910.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4] gi|229148790|ref|ZP_04277039.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550] gi|74493347|gb|EAO56460.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228634678|gb|EEK91258.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550] gi|228657543|gb|EEL13356.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4] gi|228705567|gb|EEL57924.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2] gi|228782586|gb|EEM30763.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis Bt407] gi|228789155|gb|EEM37084.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228802892|gb|EEM49725.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808670|gb|EEM55168.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821967|gb|EEM67959.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853584|gb|EEM98352.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL 200] gi|228860551|gb|EEN04939.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL 4222] Length = 83 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 20 VKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|107027580|ref|YP_625091.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693708|ref|YP_839241.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896954|gb|ABF80118.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651708|gb|ABK12348.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] Length = 180 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSES 63 >gi|331090732|ref|ZP_08339579.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399840|gb|EGG79499.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] Length = 150 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 25/54 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ R ++Q++L + L ++ Q + ++E G + ++ L+ + Sbjct: 6 NIKKFREEKNLTQQQLADKLYVSRQTICRWENGSRCPDLITAKKLALELDVSMD 59 >gi|309792311|ref|ZP_07686781.1| hypothetical protein OSCT_2732 [Oscillochloris trichoides DG6] gi|308225626|gb|EFO79384.1| hypothetical protein OSCT_2732 [Oscillochloris trichoides DG6] Length = 101 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G+R+RLRR IL ++QE L L ++ Q + E G A +L + +L Sbjct: 21 RAIGERLRLRRTILDLTQEHLRARLELAHVYVSRTQYSRIENGDTLPSADQLIALRMILG 80 Query: 68 SPISFFFDVSPTVCSDIS 85 + S +S Sbjct: 81 VSFDWLLLGSEDSEKQLS 98 >gi|299770452|ref|YP_003732478.1| transcriptional regulator [Acinetobacter sp. DR1] gi|298700540|gb|ADI91105.1| transcriptional regulator [Acinetobacter sp. DR1] Length = 197 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I + +++R R+ G + + L ++ + E+G A L+ ++ L P Sbjct: 3 DINIRIAQQVRELRLARGYTLDILATRCQVSRSAISLIERGEASPTAVVLEKLANGLGVP 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 ++ FD+ S P+ Sbjct: 63 LTQLFDIPQNNQSPQPMVRRTQQSEWKDPET 93 >gi|291436130|ref|ZP_06575520.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291339025|gb|EFE65981.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 273 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG +R R +SQ +L + + + E G +R + ++E L+ P+ Sbjct: 15 VGPLLRAWREQRRISQLELALRADSSARHISFIETGRSRPSEEMVLRLAEHLDVPV 70 >gi|227888718|ref|ZP_04006523.1| XRE family transcriptional regulator [Lactobacillus johnsonii ATCC 33200] gi|227850745|gb|EEJ60831.1| XRE family transcriptional regulator [Lactobacillus johnsonii ATCC 33200] Length = 277 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG+SQ ++ + +T K E+G++ + AS L I E+ + IS Sbjct: 4 MTIGEALKETRKNLGLSQTEMAYPI-LTKSYYSKIERGIHEINASDLIKILEMHDVDISE 62 Query: 73 F 73 F Sbjct: 63 F 63 >gi|284033097|ref|YP_003383028.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283812390|gb|ADB34229.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 801 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLE 67 +G +R R G++Q L E G++ Q V E+G R + + ++E L Sbjct: 6 LGDLLRQFRTAAGLTQGGLAEKAGLSEQAVSLLERGTRRRPRIATVHALAEALG 59 >gi|261342972|ref|ZP_05970830.1| hypothetical protein ENTCAN_09574 [Enterobacter cancerogenus ATCC 35316] gi|288314723|gb|EFC53661.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] Length = 182 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 7/118 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + P+ + + K + R+ G S ++ GI + + E G L + L Sbjct: 1 MTQPISV-IAKSLVRERLRTGHSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVAL 59 Query: 67 ESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P + + PT E V+ + + + L R+ I L+ Sbjct: 60 DIPFARLLEPQLPTTQVIRRGEGTKVIAGQANYEAILLAAC-----PPGARRDIYLLL 112 >gi|255616990|ref|XP_002539799.1| conserved hypothetical protein [Ricinus communis] gi|223502237|gb|EEF22585.1| conserved hypothetical protein [Ricinus communis] Length = 76 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D G +R R +SQE L G+T + + E G + + +VL Sbjct: 4 LDKAFGSLLRELRNERALSQEALAADAGLTRNYISQLELGSKCPSLRTVFKLCKVLGV 61 >gi|197295483|ref|YP_002154024.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|195944962|emb|CAR57578.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 116 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 15/109 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R + ++Q + E G+ Q YE+G R ++ L ++ + + Sbjct: 7 RLKQERKRMRLTQPEFAELGGVHKQAQFHYERGTRRPNSNYLVGLASA-GVDVYYLLTGR 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + E+ L+R + D R ++ L+ ++ Sbjct: 66 VATLASTVEEQQI------------LSR--YRALDADQRIAVLALIDTM 100 >gi|146337900|ref|YP_001202948.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190706|emb|CAL74710.1| Conserved hypothetical protein; putative transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 76 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFF 73 +R R G+SQE L G+ V + E+ V VG + +EVL+ P+ FF Sbjct: 10 NLRRIRHDRGISQEDLAHEAGVDRAYVSRIERAVTYVGLEIIGKFAEVLKVDPVEFF 66 >gi|71734977|ref|YP_275099.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555530|gb|AAZ34741.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 191 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 8/92 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ +R + + GI+ + K E L + +VL P+S Sbjct: 6 YLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCDVLGMPMSKL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F S + +GL++ R Sbjct: 66 FSQYDQQGSSAL--------LVKADEGLEVVR 89 >gi|326407841|gb|ADZ64912.1| putative transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 64 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ MSQ L + +G+T Q + E G I VL+ ++ F Sbjct: 1 MKMARIEAEMSQADLADEVGVTRQTIGLIESGKFNPSLRLCIDICRVLKKTLNDIF 56 >gi|296111722|ref|YP_003622104.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295833254|gb|ADG41135.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 69 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R M+Q L + L +T Q + EKG HI+ + + I F F Sbjct: 3 NRIQELRKAQHMTQADLADKLEVTRQTIISLEKGKYNASLLLAHHIATLFQLKIEDIFIF 62 Query: 75 DVSPTVC 81 + T Sbjct: 63 EEDKTDA 69 >gi|212691965|ref|ZP_03300093.1| hypothetical protein BACDOR_01460 [Bacteroides dorei DSM 17855] gi|212665357|gb|EEB25929.1| hypothetical protein BACDOR_01460 [Bacteroides dorei DSM 17855] Length = 105 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + N PN V + + R++ RR+ L ++QE L G+ F +++E V L Sbjct: 5 LAFNIDNPNEVALQIASRVKARRLKLDLTQEGLATRAGVKFATYRRFE-QTGEVSLRGLL 63 Query: 61 HISEVLE 67 I+ L Sbjct: 64 QIAFALN 70 >gi|157151530|ref|YP_001449711.1| Cro/CI family transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157076324|gb|ABV11007.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii str. Challis substr. CH1] Length = 71 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R GM+Q++L E +G+ + + E I+ V + I F++ Sbjct: 12 LKSTRESRGMTQQELAERIGVRRETILHLENNRYNPSLEMALKIARVFDLKIEDLFEL 69 >gi|126726067|ref|ZP_01741909.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126705271|gb|EBA04362.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 130 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 37/77 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G++ + + E +G++ + ++ +E + +R+Q ++ +L + + Sbjct: 20 GDRLEAARDAKGLTIKGMAEKIGVSVRTIKAWENDRSVPRGNRVQMLAGMLNVSMVWLIS 79 Query: 76 VSPTVCSDISSEENNVM 92 + S+++ + + Sbjct: 80 GTGNGTSNVAETHDRPI 96 >gi|73537860|ref|YP_298227.1| XRE family transcriptional regulator [Ralstonia eutropha JMP134] gi|72121197|gb|AAZ63383.1| transcriptional regulator, XRE family [Ralstonia eutropha JMP134] Length = 294 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +R R G SQ L G++ + + E G +R + ++E L P+ Sbjct: 18 LRYWRGRRGYSQLALSLAAGVSQRHISFLESGRSRPSREMVLALAERLGVPL 69 >gi|54023439|ref|YP_117681.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54014947|dbj|BAD56317.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 104 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R R+ R GM Q +L + +G++ + E G + + + P+ + Sbjct: 18 RFRIAREAAGMEQGELAKAIGVSRTSISNAELGKHTPRKIMVNAWAMATGVPVEWL 73 >gi|331091796|ref|ZP_08340628.1| hypothetical protein HMPREF9477_01271 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402695|gb|EGG82262.1| hypothetical protein HMPREF9477_01271 [Lachnospiraceae bacterium 2_1_46FAA] Length = 77 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R ++QE + + L + ++YE G+ + L I++ + + ++ Sbjct: 4 KRLKDLRTDHDLTQENMADILKCHREVYRRYESGIRTIPIDYLVTIAKYYNTSTDYLLEL 63 Query: 77 SP 78 + Sbjct: 64 TD 65 >gi|330807428|ref|YP_004351890.1| transcription factor, Cro/Ci family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375536|gb|AEA66886.1| Putative transcription factor, Cro/Ci family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 81 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR RR+ + +SQE L + G+ + K E+G V + I+ ++ S Sbjct: 17 LGASIRARRLDMRLSQEALADLAGVDRSHMGKIERGERNVTFLNILRIAMAMQCKPSDL 75 >gi|325965442|ref|YP_004243347.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323471529|gb|ADX75213.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 64 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +RL R G++Q +L +G T V ++E+G + + + L I++ L Sbjct: 2 VRLNRESQGLTQHQLATRMGSTQSVVARWERGDHEITMANLARIADALGV 51 >gi|317504406|ref|ZP_07962388.1| XRE family transcriptional regulator [Prevotella salivae DSM 15606] gi|315664478|gb|EFV04163.1| XRE family transcriptional regulator [Prevotella salivae DSM 15606] Length = 103 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 26/49 (53%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 ++ +R + ++Q++L E +G + + + E+G + + S I+ L Sbjct: 47 LKTQRKMQKLTQQQLAEMIGKKREYISQIERGNSDMQLSTFLQIANALG 95 >gi|283768743|ref|ZP_06341654.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104529|gb|EFC05902.1| DNA-binding protein [Bulleidia extructa W1219] Length = 71 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 32/67 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +L ++Q+++G G++ Q + E+G + I+ + + + F + Sbjct: 5 NRLKIFRAMLNINQQEMGRLCGVSRQTISLIERGDYSPSVTLALTIARICDVTVEEIFYL 64 Query: 77 SPTVCSD 83 ++ Sbjct: 65 QEEEENE 71 >gi|260580707|ref|ZP_05848533.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260092524|gb|EEW76461.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 127 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +IR+ R + +SQE + E + ++ K E+G R+ +L I+++ +S D Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNMNLSELVD 63 >gi|259502238|ref|ZP_05745140.1| transcription regulator [Lactobacillus antri DSM 16041] gi|259169856|gb|EEW54351.1| transcription regulator [Lactobacillus antri DSM 16041] Length = 212 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 33/76 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R +Q+++ LG++ + + +E G + L +S++ + + Sbjct: 5 EKIKQYRAHNNWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYQISLDDLLRE 64 Query: 77 SPTVCSDISSEENNVM 92 + ++ E ++ Sbjct: 65 DHEMINNYKQEHASLA 80 >gi|261368944|ref|ZP_05981827.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568951|gb|EFB74486.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 108 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+ IR R+ + QE L E +G++ + E+G L I LE Sbjct: 6 IGRNIRQYRLERDLRQEDLAEAVGVSTNYMGMVERGEKTPSLETLVAILNALEISAD 62 >gi|167835768|ref|ZP_02462651.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 187 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 63 >gi|167760985|ref|ZP_02433112.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC 35704] gi|167661364|gb|EDS05494.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC 35704] Length = 166 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + R + G SQE++ E + I+ Q K+E G + ++EV I Sbjct: 25 MLRKLKGFSQEEIAEKIDISRQAYGKWESGETIPDIEKCALLAEVYGITID 75 >gi|170739572|ref|YP_001768227.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193846|gb|ACA15793.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 103 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+ ++ R G+SQ +L +G + + + E G R+ R + +E LE + F Sbjct: 21 GRYLKELREARGLSQRQLAALVGAEYYTFISQLETGRGRIPPDRYRAWAEALEVDVRHF 79 >gi|221069664|ref|ZP_03545769.1| transcriptional regulator, XRE family with shikimate kinase activity [Comamonas testosteroni KF-1] gi|220714687|gb|EED70055.1| transcriptional regulator, XRE family with shikimate kinase activity [Comamonas testosteroni KF-1] Length = 300 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G++ +P+ +G+R+R R G+++ L ++ + + E G V LQ I Sbjct: 14 GDEAGKSPLLQALGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQI 73 Query: 63 SEVLESPIS 71 ++ L+ ++ Sbjct: 74 AQALQCSMA 82 >gi|91790200|ref|YP_551152.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91699425|gb|ABE46254.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 197 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ ++ R +S + L G++ + + E+ + L ++ L I+ F Sbjct: 16 VGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAILWRLASALGIDITDF 74 >gi|119383973|ref|YP_915029.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373740|gb|ABL69333.1| putative transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 85 Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 29/53 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +R R + +SQE+L G++ + + E G ++ ++ +++ L++ ++ Sbjct: 20 LRRHRKNMELSQEELAFRAGLSMRYISLLESGKHQPSLGTMKALADALDTSLT 72 >gi|310829679|ref|YP_003962036.1| prophage Lp1 protein 8 [Eubacterium limosum KIST612] gi|308741413|gb|ADO39073.1| prophage Lp1 protein 8 [Eubacterium limosum KIST612] Length = 243 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 4/79 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R ++Q ++ LGI + YE G + + + F+ Sbjct: 11 ARLRELRKSHKLTQAQMAARLGIAPASLSYYESGERLPDLRVMDTLYNEFDVS----FEY 66 Query: 77 SPTVCSDISSEENNVMDFI 95 + V+DF+ Sbjct: 67 MLGYTQSPLPPDPTVLDFL 85 >gi|291485900|dbj|BAI86975.1| hypothetical protein BSNT_05104 [Bacillus subtilis subsp. natto BEST195] Length = 139 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G+++R R ++ +L GI+ + K E G + ++ ++ VL+ P + Sbjct: 5 GQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVP----Y 60 Query: 75 DVSPTVCSDISSEENNVMD 93 + I + + + Sbjct: 61 ENLMAAAGHIQAFPEEIRE 79 >gi|284802768|ref|YP_003414633.1| hypothetical protein LM5578_2524 [Listeria monocytogenes 08-5578] gi|284995910|ref|YP_003417678.1| hypothetical protein LM5923_2475 [Listeria monocytogenes 08-5923] gi|284058330|gb|ADB69271.1| hypothetical protein LM5578_2524 [Listeria monocytogenes 08-5578] gi|284061377|gb|ADB72316.1| hypothetical protein LM5923_2475 [Listeria monocytogenes 08-5923] Length = 83 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 +L R G++Q++L E +G+ ++K E G + IS++L + + F Sbjct: 6 KLIRNKNGLTQKELAEKVGLAEISIRKIENGERDPSINTAVRISKILNTKMEIIFPDIFL 65 Query: 80 VCSDI 84 + +D Sbjct: 66 ITNDT 70 >gi|221215602|ref|ZP_03588565.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] gi|221164590|gb|EED97073.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] Length = 189 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V +R+R R G+SQ +L + G+T + E+G L+ Sbjct: 1 MSETESMSTE----VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + E + ++ FF + S + + + + L Sbjct: 57 KLLECIPMSLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGA 102 >gi|167917945|ref|ZP_02505036.1| DNA-binding protein [Burkholderia pseudomallei BCC215] Length = 187 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|116695076|ref|YP_840652.1| transcriptional regulator [Ralstonia eutropha H16] gi|113529575|emb|CAJ95922.1| transcriptional regulator [Ralstonia eutropha H16] Length = 245 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+R R G + L E G++ + + E+G +G + + L+ + F Sbjct: 29 GKRLRAARKAFGWTLAHLAELSGVSITTISRAERGQLALGYENFAALGQALQMDMGSMFA 88 Query: 76 VSPTVCSDISSE 87 + T S Sbjct: 89 GAGTKTSPFQGP 100 >gi|326571770|gb|EGE21779.1| helix-turn-helix domain-containing protein [Moraxella catarrhalis BC7] Length = 131 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++I R ++QE++ LG++ E+ R+ RL+ I+ + I+ Sbjct: 5 EKICFIREKQNLTQEQMANELGLSTNGYANLERSETRLSVDRLEQIANIFGVGIT 59 >gi|319745429|gb|EFV97735.1| rgg/GadR/MutR family transcriptional activator [Streptococcus agalactiae ATCC 13813] Length = 287 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK +R R +S L + ++ Q+ ++E+G + + SRL +I + L I Sbjct: 8 KELGKTLRRLRKGKKVSISSLADE-HLSKSQISRFERGESEITCSRLLNILDKLNITIDE 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + N V + + + +L Sbjct: 67 FVSIHSKAHTHFFILLNRVRKYCAEKNVTKLV 98 >gi|268611394|ref|ZP_06145121.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 78 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR R M+Q + + L + Q +YE + L ++E ++ + + Sbjct: 8 RIRDLREDNDMTQAAMAKILRCSQQTYSRYESHTTEIPLESLIALAEYYDTSVDYL 63 >gi|225016335|ref|ZP_03705527.1| hypothetical protein CLOSTMETH_00238 [Clostridium methylpentosum DSM 5476] gi|224950878|gb|EEG32087.1| hypothetical protein CLOSTMETH_00238 [Clostridium methylpentosum DSM 5476] Length = 81 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + G+ I+ R SQEKL E G+ + E G + + ++ I++ LE Sbjct: 16 IKKIFGENIKKYRKQKSFSQEKLAELSGLHRTYISAVECGRRSISLNNIEKIADALEVET 75 Query: 71 SFFF 74 F Sbjct: 76 YQLF 79 >gi|237809615|ref|YP_002894055.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] gi|237501876|gb|ACQ94469.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] Length = 151 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 6/75 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL------ESP 69 G+ +R R + +SQ+ +GE +G++ Q + ++EK ++ S I ++ +S Sbjct: 57 GEELRYLRKTMNLSQKAIGEQIGLSEQTIARWEKDESKPSRSEDAVIRDLYCEYIDSDSK 116 Query: 70 ISFFFDVSPTVCSDI 84 ISFF + ++ Sbjct: 117 ISFFLKAIASAEAEA 131 >gi|221201363|ref|ZP_03574402.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] gi|221208843|ref|ZP_03581841.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221171299|gb|EEE03748.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221178631|gb|EEE11039.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] Length = 205 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 28/73 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 14 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 73 Query: 71 SFFFDVSPTVCSD 83 + F + Sbjct: 74 AGLFGGDDGAPAQ 86 >gi|170732119|ref|YP_001764066.1| Cro/CI family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169815361|gb|ACA89944.1| transcriptional regulator, Cro/CI family [Burkholderia cenocepacia MC0-3] Length = 106 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 15/117 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ LG++Q + + + +YEKG+ R + L+ I+ + + Sbjct: 5 GERLKCERVRLGLNQTEFAALGAVKQRAQYQYEKGLRRPNSDYLRAIALA-GVDVWYVLT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + E V F + D + R+ I+ L+ +I + Sbjct: 64 GEESARLENLDERRIVSGF--------------RALDARKREVILALIEAIAERSSQ 106 >gi|116252575|ref|YP_768413.1| helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257223|emb|CAK08318.1| putative helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 264 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P ++G +R R MSQ L I+ + + E G + L H++E L+ P Sbjct: 3 PTARSLGDHLREWRQRRRMSQLDLALEAEISQRHLSFIESGRSTPSRDMLLHLAERLDVP 62 Query: 70 I 70 + Sbjct: 63 L 63 >gi|17229533|ref|NP_486081.1| hypothetical protein asr2041 [Nostoc sp. PCC 7120] gi|17131132|dbj|BAB73740.1| asr2041 [Nostoc sp. PCC 7120] Length = 80 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 29/48 (60%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +G+ I+ R+++G++QE+ LG+TF V ++E G + +Q I Sbjct: 14 IGQFIQEIRLVMGLTQEEFAVILGVTFPTVNRWENGHTKPSKLAIQQI 61 >gi|76818409|ref|YP_336666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126445514|ref|YP_001061010.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126456620|ref|YP_001074047.1| DNA-binding cupin domain-containing protein [Burkholderia pseudomallei 1106a] gi|167721896|ref|ZP_02405132.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167847952|ref|ZP_02473460.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|237508050|ref|ZP_04520765.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242312736|ref|ZP_04811753.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254185569|ref|ZP_04892156.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254192180|ref|ZP_04898678.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254264681|ref|ZP_04955546.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] gi|76582882|gb|ABA52356.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126225005|gb|ABN88510.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126230388|gb|ABN93801.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a] gi|157987660|gb|EDO95427.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|184209803|gb|EDU06846.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|235000255|gb|EEP49679.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242135975|gb|EES22378.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254215683|gb|EET05068.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] Length = 202 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 Query: 75 DVSPTVCS 82 + Sbjct: 85 AQPKAPET 92 >gi|53716036|ref|YP_104861.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53721043|ref|YP_110028.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642050|ref|ZP_00440812.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|121596499|ref|YP_990749.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381530|ref|YP_001025232.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126447905|ref|YP_001077212.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134283993|ref|ZP_01770688.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|166998988|ref|ZP_02264838.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167821625|ref|ZP_02453305.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|254179132|ref|ZP_04885785.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254204277|ref|ZP_04910635.1| DNA-binding protein [Burkholderia mallei FMH] gi|254209445|ref|ZP_04915790.1| DNA-binding protein [Burkholderia mallei JHU] gi|254301893|ref|ZP_04969335.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|254359589|ref|ZP_04975861.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52211457|emb|CAH37447.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422006|gb|AAU45576.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121224297|gb|ABM47828.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126240759|gb|ABO03871.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134244604|gb|EBA44703.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|147744814|gb|EDK51896.1| DNA-binding protein [Burkholderia mallei FMH] gi|147749965|gb|EDK57037.1| DNA-binding protein [Burkholderia mallei JHU] gi|148028776|gb|EDK86736.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157825063|gb|EDO88955.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|160694650|gb|EDP84659.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238523111|gb|EEP86551.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243064807|gb|EES46993.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|261826366|gb|ABM99779.2| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 202 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 Query: 75 DVSPTVCS 82 + Sbjct: 85 AQPKAPET 92 >gi|297571861|ref|YP_003697635.1| XRE family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296932208|gb|ADH93016.1| transcriptional regulator, XRE family [Arcanobacterium haemolyticum DSM 20595] Length = 109 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR R GMS L E + + + E G L +S +L +P+ Sbjct: 6 IGTRIREIREEQGMSARALAEKADGVFSQATLSRIESGKREPKLDELLVLSWLLSTPLDE 65 Query: 73 FFDV 76 F D Sbjct: 66 FTDD 69 >gi|257791632|ref|YP_003182238.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317487901|ref|ZP_07946493.1| hypothetical protein HMPREF1023_00191 [Eggerthella sp. 1_3_56FAA] gi|325830585|ref|ZP_08164006.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475529|gb|ACV55849.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316913027|gb|EFV34544.1| hypothetical protein HMPREF1023_00191 [Eggerthella sp. 1_3_56FAA] gi|325487331|gb|EGC89773.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 68 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ R G+ QE L LG++ Q + EKG I+ I F Sbjct: 3 NRLEEIRKARGIKQEDLALELGVSRQTISSLEKGRYNPSILLAFKIARRFGLQIEDVF 60 >gi|218289525|ref|ZP_03493753.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218240393|gb|EED07575.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 223 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESP 69 G+ +R R ++ +L G++ + + E G R L+ ++ L+ P Sbjct: 5 GQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVP 59 >gi|89072606|ref|ZP_01159178.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89051710|gb|EAR57163.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 213 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ + G+SQ++LGE L + + + G + L I++ L + I + Sbjct: 5 ERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRELDKIADTLNTSIGYILTG 64 Query: 77 SPTVCSDISSEENNVMDFIST 97 + ++ + +D +T Sbjct: 65 QVDTGTQATTTISTELDSAAT 85 >gi|253754693|ref|YP_003027833.1| DNA-binding protein [Streptococcus suis BM407] gi|251817157|emb|CAZ54878.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 301 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D G+R+R R M++E+ + L ++ +Q+ + E G ++ S++Q+I+ L + Sbjct: 3 DKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGL 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 +++ P S D + TP Sbjct: 63 G-LYELMPDYVSLPERYSKLKFDVLRTP 89 >gi|251772691|gb|EES53255.1| putative phage repressor [Leptospirillum ferrodiazotrophum] Length = 227 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R +SQ L E G+ Q + E + L +++ L + Sbjct: 2 MTLGDRLKEARTKRKLSQTALSEKSGVPQQTIHAIENKKAK-STGHLFPLAKALHINPEW 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|228958663|ref|ZP_04120381.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] gi|229109833|ref|ZP_04239418.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-15] gi|229127789|ref|ZP_04256776.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-Cer4] gi|229153781|ref|ZP_04281918.1| Transcriptional regulator, XRE [Bacillus cereus m1550] gi|228629684|gb|EEK86375.1| Transcriptional regulator, XRE [Bacillus cereus m1550] gi|228655667|gb|EEL11518.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-Cer4] gi|228673678|gb|EEL28937.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-15] gi|228801084|gb|EEM47983.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 192 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G+ + + +G+ + R M+ + + GI+ + + E+G + L+ Sbjct: 1 MKGSFTMIHD---RLGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLE 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 I++ L P+ F S IS +++ Sbjct: 58 LIAKALNVPLFTLFINDIDTDSLISKKKD 86 >gi|228983647|ref|ZP_04143850.1| hypothetical protein bthur0001_3690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229021982|ref|ZP_04178541.1| hypothetical protein bcere0029_3480 [Bacillus cereus AH1272] gi|229154155|ref|ZP_04282279.1| hypothetical protein bcere0010_3570 [Bacillus cereus ATCC 4342] gi|228629291|gb|EEK85994.1| hypothetical protein bcere0010_3570 [Bacillus cereus ATCC 4342] gi|228739322|gb|EEL89759.1| hypothetical protein bcere0029_3480 [Bacillus cereus AH1272] gi|228776085|gb|EEM24448.1| hypothetical protein bthur0001_3690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324324489|gb|ADY19749.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 64 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 3 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|239825658|ref|YP_002948282.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239805951|gb|ACS23016.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 73 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+RIR R + G +QE+L + LG++ + + E+G ++ I+E L + Sbjct: 7 GRRIRAFRKLKGYTQERLAKDLGVSVSILGEVERGNRLPSEQLIEKIAERLNISV 61 >gi|153854035|ref|ZP_01995368.1| hypothetical protein DORLON_01359 [Dorea longicatena DSM 13814] gi|225375773|ref|ZP_03752994.1| hypothetical protein ROSEINA2194_01405 [Roseburia inulinivorans DSM 16841] gi|149753417|gb|EDM63348.1| hypothetical protein DORLON_01359 [Dorea longicatena DSM 13814] gi|225212370|gb|EEG94724.1| hypothetical protein ROSEINA2194_01405 [Roseburia inulinivorans DSM 16841] gi|291521441|emb|CBK79734.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 78 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+++GK I+ R M+Q+++ L IT K E + AS L ++++ Sbjct: 7 DMDIGKNIQAIRYKNNMTQDQVVAKLNLMGISITKSTYAKLETNRMNIKASELVALAKLF 66 Query: 67 ESPISFFFDV 76 + I+ FF Sbjct: 67 HTDINAFFSG 76 >gi|27764000|emb|CAD60517.1| Cinorf4 protein [Streptomyces cinnamoneus] Length = 190 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 2/84 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R + + L G++ + + E+ +++ L I+ D Sbjct: 13 RNLKRWRGERHFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLLDY 72 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 + EE V + + + Sbjct: 73 EQGARVRLVPEEQVVR--MWSTEA 94 >gi|78066449|ref|YP_369218.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77967194|gb|ABB08574.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 93 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +R RR+ G+SQE L GI + + E+G + L I++ L S Sbjct: 29 IGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPS 85 >gi|83941659|ref|ZP_00954121.1| DNA binding protein, putative [Sulfitobacter sp. EE-36] gi|83847479|gb|EAP85354.1| DNA binding protein, putative [Sulfitobacter sp. EE-36] Length = 173 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 30/64 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+S + + + G++ V + E+G + + L +++ L+ + D +P Sbjct: 1 MKAARTAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLDSAP 60 Query: 79 TVCS 82 T Sbjct: 61 TPAQ 64 >gi|186687142|ref|YP_001870285.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469445|gb|ACC85244.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 116 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFDV 76 +++ R G+SQ +L G + Q +QK E+G + L EVLE + Sbjct: 6 KLKKTREAKGLSQNELARKTGYSLQNIQKIEQGRAASITFDALGRFCEVLECQPGDILEW 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 P D + +N + + ++ Sbjct: 66 RPNNIDDKTGHSSNDEVLKTASEEVE 91 >gi|22537633|ref|NP_688484.1| MutR family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|25011597|ref|NP_735992.1| hypothetical protein gbs1555 [Streptococcus agalactiae NEM316] gi|76787405|ref|YP_330126.1| Rgg/GadR/MutR family transcriptional regulator [Streptococcus agalactiae A909] gi|77414740|ref|ZP_00790868.1| transcriptional regulator, MutR family [Streptococcus agalactiae 515] gi|22534519|gb|AAN00357.1|AE014260_13 transcriptional regulator, MutR family [Streptococcus agalactiae 2603V/R] gi|24413136|emb|CAD47214.1| Unknown [Streptococcus agalactiae NEM316] gi|76562462|gb|ABA45046.1| transcriptional activator, Rgg/GadR/MutR family [Streptococcus agalactiae A909] gi|77159207|gb|EAO70390.1| transcriptional regulator, MutR family [Streptococcus agalactiae 515] Length = 282 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK +R R +S L + ++ Q+ ++E+G + + SRL +I + L I Sbjct: 3 KELGKTLRRLRKGKKVSISSLADE-HLSKSQISRFERGESEITCSRLLNILDKLNITIDE 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + N V + + + +L Sbjct: 62 FVSIHSKAHTHFFILLNRVRKYCAEKNVTKLV 93 >gi|257868389|ref|ZP_05648042.1| predicted protein [Enterococcus casseliflavus EC30] gi|257802503|gb|EEV31375.1| predicted protein [Enterococcus casseliflavus EC30] Length = 211 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ R+ ++Q++L E L ++ + + K+E G + ISE+L I Sbjct: 12 KLKEYRIANSLTQQELAEILDVSDKSISKWELGDTYPSKKNVIKISELLGISI 64 >gi|257438941|ref|ZP_05614696.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198619|gb|EEU96903.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 100 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 38/75 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R + +Q+ L + LGI+ ++ +E+G + ++ L I ++ + + Sbjct: 2 LGERLAELRKLNDDTQQTLADKLGISVWSIRAWEQGKSYPFSNVLLAICKLYGTSADYLL 61 Query: 75 DVSPTVCSDISSEEN 89 ++ SD + ++ Sbjct: 62 GLTDIDPSDEARKQR 76 >gi|226951015|ref|YP_002806106.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226841154|gb|ACO83820.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 220 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 12/101 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL-----ESP 69 V +I+ R+ G++Q++L + LG+ + + E G + S + IS+VL + Sbjct: 4 VSNKIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGKGINDIG 63 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 ISF +VS + S ++N + + F I Sbjct: 64 ISFEEEVSLESKRETSINKDNKIKDVWD-------NAFSSI 97 >gi|255308106|ref|ZP_05352277.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 141 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R I +QE+L E L ++ Q + K+E G + ++++ + Sbjct: 2 INENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDLV 61 Query: 75 DVSPTVCS 82 + S Sbjct: 62 NHSEEKTG 69 >gi|225573061|ref|ZP_03781816.1| hypothetical protein RUMHYD_01252 [Blautia hydrogenotrophica DSM 10507] gi|225039587|gb|EEG49833.1| hypothetical protein RUMHYD_01252 [Blautia hydrogenotrophica DSM 10507] Length = 110 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G +Q +G L I Q YE G I+E+L ++ Sbjct: 8 NNLRVLRTARGYTQAYMGHKLHIQRQSYCNYENGQRSPSLEITSSIAEILGVDLNTLITA 67 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + + D++S P Sbjct: 68 KLPADVLTKEDLAVLEDYLSLP 89 >gi|254390935|ref|ZP_05006145.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294816563|ref|ZP_06775205.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445482|ref|ZP_08220216.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704632|gb|EDY50444.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321378|gb|EFG03513.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 480 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 15/119 (12%) Query: 16 GKRI------RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G+RI R R GM+Q ++ L I+ + E+ + A L I+EV Sbjct: 7 GRRIYAHAKLRRLRREHGMNQVEMARALAISTSYANQLEQSQRPLTAPVLLRIAEVFGVD 66 Query: 70 ISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +F + T ++E + + + R D +V + ++ L R Sbjct: 67 PEYFSEADEDRLATDLRAALADEACGAELPGAEEINEAAR-----DHPEVARALVALHR 120 >gi|238788598|ref|ZP_04632390.1| Prophage repressor protein [Yersinia frederiksenii ATCC 33641] gi|238723193|gb|EEQ14841.1| Prophage repressor protein [Yersinia frederiksenii ATCC 33641] Length = 240 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 17 KRIRL----RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ ++ LG+SQE + LG+ V ++ G+N + + ++VL PIS Sbjct: 15 KRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVTNAAAFAKVLNEPISS 74 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 F SP++ +++ ++ IST GL Sbjct: 75 F---SPSLAKELAKMAESLS--ISTRSGL 98 >gi|238796818|ref|ZP_04640323.1| Prophage repressor protein [Yersinia mollaretii ATCC 43969] gi|238719306|gb|EEQ11117.1| Prophage repressor protein [Yersinia mollaretii ATCC 43969] Length = 240 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 9/89 (10%) Query: 17 KRIRL----RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ ++ LG+SQE + LG+ V ++ G+N + + ++VL PIS Sbjct: 15 KRLKELFNAKKKALGISQESVAHELGVGQSAVNQFLNGINPLNVTNAAAFAKVLNEPISS 74 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 F SP++ +++ ++ IST GL Sbjct: 75 F---SPSLAKELAKMAESLS--ISTRSGL 98 >gi|119718420|ref|YP_925385.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614] gi|119539081|gb|ABL83698.1| helix-turn-helix domain protein [Nocardioides sp. JS614] Length = 128 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ +R+ +S +L G++ + + E+G+ R A LQ I++ L + Sbjct: 13 LGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERGLRRPSAEVLQQIAKALRISAEQLY 72 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + V S + + + Sbjct: 73 IRAGIVDPHAGSPGSVELAILGDS 96 >gi|167740855|ref|ZP_02413629.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167826439|ref|ZP_02457910.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167913192|ref|ZP_02500283.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167921137|ref|ZP_02508228.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217423144|ref|ZP_03454646.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|226193468|ref|ZP_03789073.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254192687|ref|ZP_04899123.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|169649442|gb|EDS82135.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|217394052|gb|EEC34072.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|225934350|gb|EEH30332.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] Length = 202 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 Query: 75 DVSPTVCS 82 + Sbjct: 85 AQPKAPET 92 >gi|303326179|ref|ZP_07356622.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302864095|gb|EFL87026.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 189 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P N+G RIR R + E L + ++ + + + E G +Q ++ L Sbjct: 2 PTKHNIGSRIRSFREEREIDLETLSQDTNLSVEFLNQLENGEIYPSIGPMQKLARALGVR 61 Query: 70 ISFFFDV 76 + F D Sbjct: 62 LGTFLDD 68 >gi|294807660|ref|ZP_06766453.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|294445096|gb|EFG13770.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 184 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 17 KRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K+I R G SQ +L + G++ + KYEKG+ + L I + L P + F++ Sbjct: 6 KQIIFAREYRGYSQTELASKIVGLSQSNLSKYEKGIGPLSTDVLNRIIDFLGFP-TDFYE 64 Query: 76 VSPTVCSDISS 86 + ++ + Sbjct: 65 KKISNIAENAH 75 >gi|257874662|ref|ZP_05654315.1| predicted protein [Enterococcus casseliflavus EC10] gi|257808826|gb|EEV37648.1| predicted protein [Enterococcus casseliflavus EC10] Length = 208 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ R+ ++Q++L E L ++ + + K+E G + ISE+L I Sbjct: 9 KLKEYRIANSLTQQELAEILDVSDKSISKWELGDTYPSKKNVIKISELLGISI 61 >gi|257051844|ref|YP_003129677.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256690607|gb|ACV10944.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 70 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 27/65 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R ++Q +L + +G++ Q + E+ ++ + I F+ P Sbjct: 5 LKVWRAKEDITQGELADAVGVSRQTINALERERYDPSLELAFKLARHFDCAIEDIFEYDP 64 Query: 79 TVCSD 83 S+ Sbjct: 65 ADASE 69 >gi|255652542|ref|ZP_05399444.1| transcriptional regulator [Clostridium difficile QCD-37x79] Length = 105 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 27/58 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R G + ++L + + ++ + +YE L+ ++++ + + + Sbjct: 2 ISDRLRELRKEKGYTIKELAQIINVSDISISRYENNKRDADIKTLKELAKLYDVSLDY 59 >gi|189423925|ref|YP_001951102.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189420184|gb|ACD94582.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 243 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R R G+ Q + + GI+ + ++E G R+ L I+ +L+ F Sbjct: 8 RRAREAKGLKQSDIADQCGISRSALARFETGSLRLAEETLLLIAPLLDIDPEFL 61 >gi|29347964|ref|NP_811467.1| hypothetical protein BT_2554 [Bacteroides thetaiotaomicron VPI-5482] gi|253572556|ref|ZP_04849958.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29339866|gb|AAO77661.1| putative DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251837971|gb|EES66060.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 147 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 2/129 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G IR R+ M+QE L + + ++ V KYE + + L S L P + Sbjct: 11 VHHGHNIRRFRIEKNMNQEVLSQLVHLSQSAVSKYE-QMRVIDDEMLHRFSRALGVPFEY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS-EK 131 + + + + ++ + ++++ +KI EL ++ ++ Sbjct: 70 LKSLEEDAQTVVFENNTVNNNDQASANIGGYVEENNRVNNYNPIEKITELYERLLKEKDE 129 Query: 132 KYRTIEEEC 140 KY +E Sbjct: 130 KYAALERRL 138 >gi|115353089|ref|YP_774928.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170702522|ref|ZP_02893400.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|172061941|ref|YP_001809593.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115283077|gb|ABI88594.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] gi|170132560|gb|EDT01010.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171994458|gb|ACB65377.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 183 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R+R R G+SQ +L + G+T + E+G L+ + E + ++ FF Sbjct: 5 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + S + + + + L Sbjct: 65 TFELVESRSVVSRRDEMPNLGNDTLAFHLVGA 96 >gi|331701909|ref|YP_004398868.1| phage repressor like XRE family transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129252|gb|AEB73805.1| phage repressor like transcriptional regulator, XRE family [Lactobacillus buchneri NRRL B-30929] Length = 237 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFDV 76 +R RR L ++ E++G+ +G+ ++K+E G + + ++ +S+ L+ D Sbjct: 4 NLRNRRKELNLTLEEVGKMVGVGKSTIRKWETGYIENMKRDKIIALSKALKVSPMDIIDP 63 Query: 77 SPTVCSDISSEENNV 91 + + + + + + Sbjct: 64 NKEISNPMIDKIEEI 78 >gi|325965030|ref|YP_004242936.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Arthrobacter phenanthrenivorans Sphe3] gi|323471117|gb|ADX74802.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Arthrobacter phenanthrenivorans Sphe3] Length = 507 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +V +R R G +Q +L LG + V + E+G + +Q + + I Sbjct: 8 HVAAMLRDARGEKGWTQGQLAAELGTSQSAVARMEQGKQNLSLKMIQRLEAIFGRSI 64 >gi|317484534|ref|ZP_07943442.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924195|gb|EFV45373.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 184 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 15/114 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V + ++ R +S + + +C G++ + + E+GV S L I+ L+ F Sbjct: 8 VAENLKRLREERKLSLDAVAKCSGVSKSMLGQIERGVTNPTISTLWKIANGLKIS---FT 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG---------LQLNRYF--IQID-DVKVR 116 + +D+ + + DG +R F I+ D VR Sbjct: 65 SLMMRPETDVEVVPRSAITPFVETDGKYRNYPVFPFDSSRGFEMYAIELDPGVR 118 >gi|291545610|emb|CBL18718.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 118 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 10 PVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+D +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 2 PIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLH 61 Query: 68 SPIS 71 + Sbjct: 62 ISLD 65 >gi|295699801|ref|YP_003607694.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439014|gb|ADG18183.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 104 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + K +RL R GMSQE L + G+ Q+ E+G+ + L ++ L Sbjct: 21 IAKNLRLLRDKKGMSQEVLADRAGLHRTQLSVIERGLRNMRLDTLVSLAAALGVS 75 >gi|260592611|ref|ZP_05858069.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella veroralis F0319] gi|260535381|gb|EEX17998.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella veroralis F0319] Length = 110 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 29/55 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+ IR R+ ++Q++LG+ +G+ Q+ + E G + + + + + L Sbjct: 40 YIGEAIRKARLSQNLTQDELGKKIGVQRAQICRLESGRSVITLPIMSRVFQALGI 94 >gi|251777900|ref|ZP_04820820.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082215|gb|EES48105.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 92 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R + QE + L I YE G + L+ I+ I F Sbjct: 2 LGERLKELRDERELKQEDVAAKLNIGRSTYANYETERAEPGIAVLKDIASFYNVSIDFL 60 >gi|242398075|ref|YP_002993499.1| hypothetical protein TSIB_0082 [Thermococcus sibiricus MM 739] gi|242264468|gb|ACS89150.1| hypothetical protein TSIB_0082 [Thermococcus sibiricus MM 739] Length = 367 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 8/105 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G S E+L + LG++ ++++ E + ++L+ ++++ + P++ FF Sbjct: 14 LRKLRENSGYSVEELAKKLGVSEKKIEDVESSKDSFTITQLKSLAKIYKIPLAAFFSEDI 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK-VRQKIIEL 122 + N + P+ F+ I K + I+EL Sbjct: 74 PHIPSLPDYRINRDKKL-NPE------AFVAIRRAKYLSDMIVEL 111 >gi|228956760|ref|ZP_04118546.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802948|gb|EEM49780.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 117 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G +Q + E L I + YE G + L ++++ + + + Sbjct: 1 MTLGERLRTCREKSGYTQTYITEKLEIHRGTLSSYESGRRKPDYDTLSKLADIYKVSVDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|254474388|ref|ZP_05087774.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214028631|gb|EEB69466.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 462 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 49/133 (36%), Gaps = 13/133 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R L ++Q++ LG++ + + E V + + +++ ++ Sbjct: 6 LYAGAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTE 65 Query: 73 FFDVSPT----------VCSDISSEENNVMDF-ISTPDGLQLNRYFIQIDDV--KVRQKI 119 +S+ + D ++ + L R F+ + + +++ Sbjct: 66 LSTGDSERLVSDMREVMADPVFASDAPPMADLRLTASNAPALARAFLTLHRAYRQTHERL 125 Query: 120 IELVRSIVSSEKK 132 L ++ + + Sbjct: 126 ASLDEALGREDAR 138 >gi|220930676|ref|YP_002507585.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220001004|gb|ACL77605.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 60 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 K+++ R ++Q +L GI+ Q + E G L+ +++ L++ + Sbjct: 2 KKLKQARESKNLTQSELASRTGISQQHISMIENGERIGSVETLRELAKALDTSVD 56 >gi|134298740|ref|YP_001112236.1| helix-turn-helix domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051440|gb|ABO49411.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1] Length = 206 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKR+ R LG+S+ KL + +G+ + K E + L+ I L ++ FF Sbjct: 4 GKRVTFFREKLGISKRKLAKMIGVDPSLITKIEANNTKPSLDTLERICTSLGIELADFF 62 >gi|330718206|ref|ZP_08312806.1| transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 71 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R +SQ +L + +G+ Q + E + ++ LE+ ++ F Sbjct: 2 NRIKQYRQKKKLSQYELSQRIGVARQTINLIENDKYNPSLALCLKLAYALETDLNTLF 59 >gi|299138223|ref|ZP_07031402.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298599469|gb|EFI55628.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 64 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R+ R G SQ L + L ++ Q V E G I+ + + I F+ Sbjct: 3 NRLRVLRAEKGWSQADLADRLEVSRQSVNAIETGKYDPSLPLAFRIARLFDQRIEEIFED 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|291541679|emb|CBL14789.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 64 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R R M Q ++ E LGI +YE+G + L ++++ + + Sbjct: 4 KRLRDLREDHDMKQSEVAEYLGIQQTVYSRYERGFQSIPVEHLIKLADLYKVSTDY 59 >gi|288561200|ref|YP_003424686.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543910|gb|ADC47794.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 108 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 9/94 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ V K ++ R G +QE++ + LGIT + K E G + L + + Sbjct: 2 IDV-VAKNLKDLRKKNGYTQEQVSDYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSP 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + E + + F + + + LN Sbjct: 61 EYL-------IGETDLYEKSTIAF-RSDEKVDLN 86 >gi|284028971|ref|YP_003378902.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808264|gb|ADB30103.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 185 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ + +R +S +L + G++ + + E+G+ + A LQ +++ L + Sbjct: 15 VGEYLAEQRRHAQLSLRQLSDLAGVSNPYLSQIERGLRKPSADVLQQLAKALRISAETLY 74 Query: 75 ----DVSPTVCSDISSEENNVMDFI 95 + P SD + V D I Sbjct: 75 VRAGILDPDDGSDGAGRATGVTDAI 99 >gi|221199771|ref|ZP_03572814.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] gi|221208624|ref|ZP_03581624.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221171435|gb|EEE03882.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221180010|gb|EEE12414.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] Length = 189 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V +R+R R G+SQ +L + G+T + E+G L+ Sbjct: 1 MSETESMSTE----VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + E + ++ FF + S + + + + L Sbjct: 57 KLLECIPMSLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGA 102 >gi|221210048|ref|ZP_03583029.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221170736|gb|EEE03202.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 161 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G++Q +L LG+T Q + E + V RL + VL +S + P + Sbjct: 19 RKSAGLTQAQLAARLGVTQQSYAQLEANPSAVSIERLFKVLNVLGVRLS----LDPAASA 74 Query: 83 DISSEEN 89 D++ Sbjct: 75 DVAQTAA 81 >gi|194291881|ref|YP_002007788.1| transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193225785|emb|CAQ71731.1| putative transcriptional regulator [Cupriavidus taiwanensis LMG 19424] Length = 297 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +R R G SQ L G++ + + E G R + ++E L P+ Sbjct: 18 LRYWRGKRGYSQLALSLAAGVSQRHISFLESGRARPSREMVLALAERLGVPL 69 >gi|170699355|ref|ZP_02890402.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170135727|gb|EDT04008.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 203 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 25/68 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCS 82 + Sbjct: 86 SQPKAAET 93 >gi|281355570|ref|ZP_06242064.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281318450|gb|EFB02470.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 185 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G++I R ++ ++ + GI+ V + E+G+ S L+ I L+ + Sbjct: 2 IENRIGRKIHQYRKDKNLTIKEFSDISGISTALVSQLERGIGNPSLSVLRLICRTLDISL 61 Query: 71 S--FFFDVSPTVCSDISSEENNVMD 93 S FF ++ +SE + + Sbjct: 62 SSLFFEEIDNASLIRRASELERIHN 86 >gi|148643210|ref|YP_001273723.1| transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|222445441|ref|ZP_03607956.1| hypothetical protein METSMIALI_01079 [Methanobrevibacter smithii DSM 2375] gi|261349997|ref|ZP_05975414.1| putative transcriptional regulator [Methanobrevibacter smithii DSM 2374] gi|148552227|gb|ABQ87355.1| predicted transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|222435006|gb|EEE42171.1| hypothetical protein METSMIALI_01079 [Methanobrevibacter smithii DSM 2375] gi|288860783|gb|EFC93081.1| putative transcriptional regulator [Methanobrevibacter smithii DSM 2374] Length = 67 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +I+ R G+SQ+KL + G+T Q + E I+++L+ Sbjct: 4 KIKEFRNEKGLSQQKLADLTGVTRQTINALENARYNPSLLLAFRITKILD 53 >gi|28379424|ref|NP_786316.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254557562|ref|YP_003063979.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300768681|ref|ZP_07078578.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28272263|emb|CAD65174.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254046489|gb|ACT63282.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300493773|gb|EFK28944.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 223 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +N +++ R M+Q + L ++ Q + +E G + L IS + + Sbjct: 1 MNFSDNLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVD 59 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.309 0.159 0.473 Lambda K H 0.267 0.0488 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,139,691,006 Number of Sequences: 14124377 Number of extensions: 139522170 Number of successful extensions: 460060 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 23813 Number of HSP's successfully gapped in prelim test: 4663 Number of HSP's that attempted gapping in prelim test: 432186 Number of HSP's gapped (non-prelim): 29260 length of query: 144 length of database: 4,842,793,630 effective HSP length: 108 effective length of query: 36 effective length of database: 3,317,360,914 effective search space: 119424992904 effective search space used: 119424992904 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 76 (33.6 bits)