RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780424|ref|YP_003064837.1| transcriptional regulator
protein [Candidatus Liberibacter asiaticus str. psy62]
(144 letters)
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller
protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Length = 69
Score = 59.4 bits (144), Expect = 1e-10
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72
+ G+R+R R G+SQE L G+ V E+G V + ++ L+
Sbjct: 8 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRE 67
Query: 73 FF 74
F
Sbjct: 68 LF 69
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus
caldolyticus [TaxId: 1394]}
Length = 77
Score = 56.4 bits (136), Expect = 9e-10
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66
N ++I G+ ++ R G+SQE+L + G+ + + E+G + + I L
Sbjct: 3 NEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAAL 62
Query: 67 ESPISFFFD 75
+ P S FF
Sbjct: 63 DIPASTFFR 71
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
{Bacillus subtilis [TaxId: 1423]}
Length = 68
Score = 54.7 bits (132), Expect = 3e-09
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73
+G+RI+ R G S +L E G+ + E+ + L+ +S VL+ +
Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61
Query: 74 FD 75
D
Sbjct: 62 LD 63
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain
{Salmonella bacteriophage P22 [TaxId: 10754]}
Length = 66
Score = 52.5 bits (126), Expect = 2e-08
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74
+G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ +
Sbjct: 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 63
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator
VC1968, N-terminal domain {Vibrio cholerae [TaxId:
666]}
Length = 79
Score = 51.9 bits (124), Expect = 2e-08
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73
+ +++ R G+S + + G++ + + E+G + + L I+ LE+ S F
Sbjct: 8 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 67
Query: 74 FDVSPTVCSD 83
F P + S
Sbjct: 68 FANDPQLLSS 77
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain
{Bacteriophage 434 [TaxId: 10712]}
Length = 63
Score = 49.9 bits (119), Expect = 8e-08
Identities = 13/62 (20%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73
++ R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + +
Sbjct: 1 SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWL 59
Query: 74 FD 75
+
Sbjct: 60 LN 61
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2
{Enterococcus faecalis [TaxId: 1351]}
Length = 66
Score = 49.5 bits (118), Expect = 1e-07
Identities = 14/64 (21%), Positives = 25/64 (39%)
Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74
+ ++L R +SQ +L L ++ Q + EK I+ L +P+ F
Sbjct: 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIF 61
Query: 75 DVSP 78
P
Sbjct: 62 QWQP 65
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Length = 65
Score = 44.8 bits (106), Expect = 3e-06
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73
+ +R++ RR+ L M+Q +L G+ Q +Q E G L I+ L +
Sbjct: 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAG-VTKRPRFLFEIAMALNCDPVWL 61
Query: 74 F 74
Sbjct: 62 Q 62
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain
{Bacteriophage lambda [TaxId: 10710]}
Length = 87
Score = 44.7 bits (105), Expect = 4e-06
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 10 PVDINVGKRI----RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65
+ +R+ ++ LG+SQE + + +G+ V G+N + A ++++
Sbjct: 4 QEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKI 63
Query: 66 LESPISFFFD 75
L+ + F
Sbjct: 64 LKVSVEEFSP 73
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 62
Score = 42.9 bits (101), Expect = 1e-05
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73
RI++ R L ++QE+ I ++ +E+G + ++ + P
Sbjct: 3 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLKIIAVDPEGTA 58
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471
C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Length = 67
Score = 42.4 bits (100), Expect = 2e-05
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54
+ +S E LGI+ + V Y +
Sbjct: 3 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKII 41
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related
factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 41.6 bits (97), Expect = 3e-05
Identities = 16/69 (23%), Positives = 25/69 (36%)
Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70
V + VGK I+ R G++Q+ L + Q + YE G L I + +
Sbjct: 3 VTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKL 62
Query: 71 SFFFDVSPT 79
P
Sbjct: 63 RGKDIGKPI 71
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator
RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Length = 82
Score = 36.2 bits (83), Expect = 0.001
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 9 NPVDINVGKRI--RLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEV 65
++ G+R+ LR MS + GI+ + ++K E G + + ++ V
Sbjct: 5 TAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARV 64
Query: 66 LESPISFFFDVSPTV 80
L+ + V
Sbjct: 65 LDLSLDDVAAVVTFG 79
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli
[TaxId: 562]}
Length = 87
Score = 33.4 bits (76), Expect = 0.007
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75
G I+ L +S + + I + G + +S V+ S + +
Sbjct: 3 GDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLN 62
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 89
Score = 33.3 bits (75), Expect = 0.009
Identities = 8/66 (12%), Positives = 16/66 (24%), Gaps = 1/66 (1%)
Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISF 72
+ + +SQ LGI +V + + L+ +
Sbjct: 11 RLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEI 70
Query: 73 FFDVSP 78
P
Sbjct: 71 VIRKKP 76
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas
europaea [TaxId: 915]}
Length = 69
Score = 26.3 bits (57), Expect = 1.2
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF 73
+ ++ G++Q K E LG+T +V + ++ L + + +
Sbjct: 7 LLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEIN 66
Query: 74 F 74
Sbjct: 67 I 67
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 23.4 bits (50), Expect = 7.0
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 38 GI-TFQQVQKY-EKGVNRVGASRLQHISEVLES 68
GI + G + +G S + E +S
Sbjct: 200 GIRSGIDAVLAVGAGADIIGTSSAVKVLESFKS 232
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 283
Score = 23.2 bits (50), Expect = 9.7
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 102 QLNRYFIQIDDVKV 115
LN+Y ++ KV
Sbjct: 243 HLNKYLLRHKPTKV 256
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.378
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 532,635
Number of extensions: 23030
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 22
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)