HHsearch alignment for GI: 254780425 and conserved domain: PRK13825
>PRK13825 conjugal transfer protein TraB; Provisional.
Probab=99.86 E-value=2.4e-18 Score=138.04 Aligned_cols=183 Identities=17% Similarity=0.179 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCC
Q ss_conf 33578998754310133466861898312101100011234667765641079824201100123455751210000367
Q gi|254780425|r 261 EKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQPSILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIIN 340 (518)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~~~~~~~l~~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~ 340 (518)
T Consensus 203 ~~~~~~~r~li~~~~~~~~~g~~vvvLPEs~lg~Wtp~~~~lw~~--~l~~~~~tvi~Ga~v~~----~~Gydn~lv~i~ 276 (389)
T PRK13825 203 DGSLLRHRELIATVRAAARAGARVVVLPESALGFWTPTTERLWRE--SLRGADATVIAGAAVVD----PGGYDNVLVAIS 276 (389)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCHHHHHHHH--HHCCCCCEEEEEEEECC----CCCCCCEEEEEC
T ss_conf 336899999999988734799739994632115687138999999--74689928998236758----998744479971
Q ss_pred CCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCEEECCCCHHHHHH--HHHHCCCCC
Q ss_conf 321221112563342213310010000121110012222101358776200012200102221666558--888512699
Q gi|254780425|r 341 SKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFH--QDINNLENV 418 (518)
Q Consensus 341 ~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ICyE~~f~--~~~r~~~~a 418 (518)
T Consensus 277 ~~~~r-ily~~RmPVP~sMWqPW~~~~g~~----g~~~a~~f~---npv~-~i~G~r~a~lICYEqll~wp~l~sml~~P 347 (389)
T PRK13825 277 AGGGR-ILYRERMPVPVSMWQPWLPWTGES----GGARAHFFA---NPVV-TVDGRRVAPLICYEQLIVWPVLQSMLHAP 347 (389)
T ss_pred CCCCE-EEECCCCCCCCCCCCCCCCCCCCC----CCCCCCCCC---CCEE-EECCEEEEEEEEHHHHHHHHHHHHHHCCC
T ss_conf 89726-850367766510366775224899----972001245---8636-45680687754187878889999874299
Q ss_pred CEEEEECCCCCCC-C-CHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 7799962775576-7-628999999999999729919998559
Q gi|254780425|r 419 SAILNIIDDSGFM-G-SGTDHSFRYAQIQAVEIGLPLIRATNN 459 (518)
Q Consensus 419 ~~lvn~tNd~Wf~-~-s~~~qH~~~a~~RAiE~~r~~vra~nt 459 (518)
T Consensus 348 dviva~~N~-Wwt~gTsi~aIQras~~awarLfg~Plv~A~N~ 389 (389)
T PRK13825 348 DVIVAVGNG-WWTKGTSIVAIQRASAEAWARLFGVPLVRAFNT 389 (389)
T ss_pred CEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 889975886-616899709999999999999837844876049