HHsearch alignment for GI: 254780425 and conserved domain: TIGR00546

>TIGR00546 lnt apolipoprotein N-acyltransferase; InterPro: IPR004563 Apolipoprotein N-acyltransferase 2.3.1 from EC transfers the acyl group to lipoproteins and is involved in lipoprotein biosynthesis. It is an integral membrane protein.; GO: 0016410 N-acyltransferase activity, 0042158 lipoprotein biosynthetic process, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=630.51  Aligned_cols=393  Identities=28%  Similarity=0.472  Sum_probs=321.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999987687555666403---30248999999999999999999999999865411110344334444465331244
Q gi|254780425|r   77 FGVGYFLAGLWWVREGIVDQI---GSRFPFWGVVLFFVMISFLLAIFYGVATSLASLLWSTGMGRICVFACAVGFCEWLR  153 (518)
Q Consensus        77 ~G~~~~~~~l~Wi~~sl~~~~---~~~~~~~~~~~~~~~l~~~lal~~~~~~~l~~~~~~~~~~~~l~~~~~w~~~E~lR  153 (518)
T Consensus         1 f~~~~~~~~~~W~~~~l~~~~~~L~~~~~~~~~~~~v~~l~~~~~~~~~L~~~~~~~~~~~~--~~~~~~~~W~~~E~~r   78 (441)
T TIGR00546         1 FGFGFFLAGLFWLGIALSVNGVWLVGGFIAFVAGLLVVGLPALLALFPGLAAYLLRRLAPRR--ALLALALLWTLAEWLR   78 (441)
T ss_pred             CEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CEEEHHHHHHHHHHHH
T ss_conf             90001248999998645201035554667789999999999999999999987877631787--3375246999999998


Q ss_pred             CCC-CC-CCCCCCCCCCCH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHH
Q ss_conf             552-44-630001211101-478886333201332104667877785433110000---------014444556899988
Q gi|254780425|r  154 SVL-GI-GTWNAIGYAAMP-IPVMMQSVHWIGLFGMNALSVFCFASPALFGTRRDV---------NIGIILSSTLLILHI  221 (518)
Q Consensus       154 ~~~-~~-gPW~~lg~~~~~-~~~~~q~a~~~Gv~Glsflvv~i~~~~~~~~~~~~~---------~~~~~~~~~ll~~~~  221 (518)
T Consensus        79 ~~~~~gGfpW~~~G~~~~~~~~~l~Q~a~~~Gv~~~Sfl~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~  158 (441)
T TIGR00546        79 SFGFLGGFPWGLIGYAQSPSLLPLIQYASIFGVWGLSFLVVFLNALLALVLKKKLSKKEVNQAVFKKLLAIAVLVLLLAL  158 (441)
T ss_pred             HHHHCCCCCCHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             75402457702211323035553045410232899999999999999987544453223023455568999999999961


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCEEEECCCCCCC
Q ss_conf             7543025545554566555553210012442035554333357899875431013346-------686189831210110
Q gi|254780425|r  222 AYGWWILTEDSKSSLKFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGE-------LEPVIIVWAYLPFPF  294 (518)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~-------~~~dLiVWPEsa~p~  294 (518)
T Consensus       159 g~~~~~~~~~~~~~~~~~~~~~~ValvQ~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvvwPEta~~~  238 (441)
T TIGR00546       159 GFLLYALKAYLKLATPAPEPTLKVALVQPNIPQDLKFDKEGLEAILELLTSLTKQAVEKVHAGLYEKPDLVVWPETALPF  238 (441)
T ss_pred             CCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHCC
T ss_conf             33000358885067887773268999868888001341101799999999998852256676777873278846153323


Q ss_pred             CHHHHHHH----------HHHHHHHH-CCCCEEEECCCCCCCCC---CCCCEEEEEECCCCCC----CCCCCCCCEEEEE
Q ss_conf             00112346----------67765641-07982420110012345---5751210000367321----2211125633422
Q gi|254780425|r  295 SIVDQPSI----------LKKIASVL-KINQLLIVGSMRKELVD---GRSHFYKSIYIINSKG----EILASSNAKHLVP  356 (518)
Q Consensus       295 ~~~~~~~~----------~~~l~~~~-~~~~~li~G~~~~~~~~---~~~~~yNs~~~~~~~g----~~~~~Y~K~~LVP  356 (518)
T Consensus       239 ~l~~~~~~~~~~Q~~f~~~~~~~~~~~~~~~p~~~G~~~~~~~~~~~~~~~~yNs~~~~~~~~~a~~~~~~~Y~K~~LVP  318 (441)
T TIGR00546       239 DLENSPDKLHESQSAFDLLKALKALVLSKGIPILIGAPDADPKGQKGEEYEYYNSVYLLDPGGKAVLEVVQRYDKVKLVP  318 (441)
T ss_pred             CCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCEEECC
T ss_conf             66643211033673789999999998740984899630103788888743111258998488620035053538745435


Q ss_pred             HHHHHC--CCCHHHHHHHHCCCC--CCCCCCCCCCCCEEECCC-CEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCC
Q ss_conf             133100--100001211100122--221013587762000122-00102221666558888512--69977999627755
Q gi|254780425|r  357 FAEYLP--YRNILKKLNLDFYMF--PLDYSSSDISPLLGLSEK-LRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSG  429 (518)
Q Consensus       357 FGEyiP--~~~~~~~l~~~~~~~--~~~~~~g~~~~~~~~~~~-~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~W  429 (518)
T Consensus       319 FGEy~P~~~~~~f~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~ICYE~~Fp~~~r~~~~~Ga~~L~~~tNDaW  398 (441)
T TIGR00546       319 FGEYIPFGLKFVFKWLSKLFFLASEQESFARGNGPQVLKLPGGAVKLAPLICYESIFPELVRALARQGAELLVNLTNDAW  398 (441)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             62326776333444776543200222331127887653447760277753115541168898742588328997400564


Q ss_pred             CCCC-HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCEE
Q ss_conf             7676-28999999999999729919998559704699899808
Q gi|254780425|r  430 FMGS-GTDHSFRYAQIQAVEIGLPLIRATNNGVSAFLDERGQI  471 (518)
Q Consensus       430 f~~s-~~~qH~~~a~~RAiE~~r~~vra~ntGiS~~id~~G~i  471 (518)
T Consensus       399 f~~~~~~~QH~~~~~~RA~E~~~~~~Ra~NtG~sa~i~p~G~~  441 (441)
T TIGR00546       399 FGDSSGPWQHFALARFRAIENGRPLVRAANTGISAVIDPRGRI  441 (441)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCC
T ss_conf             3666167889999888876448548999606625898067889