HHsearch alignment for GI: 254780425 and conserved domain: TIGR00546
>TIGR00546 lnt apolipoprotein N-acyltransferase; InterPro: IPR004563 Apolipoprotein N-acyltransferase 2.3.1 from EC transfers the acyl group to lipoproteins and is involved in lipoprotein biosynthesis. It is an integral membrane protein.; GO: 0016410 N-acyltransferase activity, 0042158 lipoprotein biosynthetic process, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=630.51 Aligned_cols=393 Identities=28% Similarity=0.472 Sum_probs=321.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999987687555666403---30248999999999999999999999999865411110344334444465331244
Q gi|254780425|r 77 FGVGYFLAGLWWVREGIVDQI---GSRFPFWGVVLFFVMISFLLAIFYGVATSLASLLWSTGMGRICVFACAVGFCEWLR 153 (518)
Q Consensus 77 ~G~~~~~~~l~Wi~~sl~~~~---~~~~~~~~~~~~~~~l~~~lal~~~~~~~l~~~~~~~~~~~~l~~~~~w~~~E~lR 153 (518)
T Consensus 1 f~~~~~~~~~~W~~~~l~~~~~~L~~~~~~~~~~~~v~~l~~~~~~~~~L~~~~~~~~~~~~--~~~~~~~~W~~~E~~r 78 (441)
T TIGR00546 1 FGFGFFLAGLFWLGIALSVNGVWLVGGFIAFVAGLLVVGLPALLALFPGLAAYLLRRLAPRR--ALLALALLWTLAEWLR 78 (441)
T ss_pred CEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CEEEHHHHHHHHHHHH
T ss_conf 90001248999998645201035554667789999999999999999999987877631787--3375246999999998
Q ss_pred CCC-CC-CCCCCCCCCCCH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHH
Q ss_conf 552-44-630001211101-478886333201332104667877785433110000---------014444556899988
Q gi|254780425|r 154 SVL-GI-GTWNAIGYAAMP-IPVMMQSVHWIGLFGMNALSVFCFASPALFGTRRDV---------NIGIILSSTLLILHI 221 (518)
Q Consensus 154 ~~~-~~-gPW~~lg~~~~~-~~~~~q~a~~~Gv~Glsflvv~i~~~~~~~~~~~~~---------~~~~~~~~~ll~~~~ 221 (518)
T Consensus 79 ~~~~~gGfpW~~~G~~~~~~~~~l~Q~a~~~Gv~~~Sfl~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 158 (441)
T TIGR00546 79 SFGFLGGFPWGLIGYAQSPSLLPLIQYASIFGVWGLSFLVVFLNALLALVLKKKLSKKEVNQAVFKKLLAIAVLVLLLAL 158 (441)
T ss_pred HHHHCCCCCCHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 75402457702211323035553045410232899999999999999987544453223023455568999999999961
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCEEEECCCCCCC
Q ss_conf 7543025545554566555553210012442035554333357899875431013346-------686189831210110
Q gi|254780425|r 222 AYGWWILTEDSKSSLKFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGE-------LEPVIIVWAYLPFPF 294 (518)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~-------~~~dLiVWPEsa~p~ 294 (518)
T Consensus 159 g~~~~~~~~~~~~~~~~~~~~~~ValvQ~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvvwPEta~~~ 238 (441)
T TIGR00546 159 GFLLYALKAYLKLATPAPEPTLKVALVQPNIPQDLKFDKEGLEAILELLTSLTKQAVEKVHAGLYEKPDLVVWPETALPF 238 (441)
T ss_pred CCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHCC
T ss_conf 33000358885067887773268999868888001341101799999999998852256676777873278846153323
Q ss_pred CHHHHHHH----------HHHHHHHH-CCCCEEEECCCCCCCCC---CCCCEEEEEECCCCCC----CCCCCCCCEEEEE
Q ss_conf 00112346----------67765641-07982420110012345---5751210000367321----2211125633422
Q gi|254780425|r 295 SIVDQPSI----------LKKIASVL-KINQLLIVGSMRKELVD---GRSHFYKSIYIINSKG----EILASSNAKHLVP 356 (518)
Q Consensus 295 ~~~~~~~~----------~~~l~~~~-~~~~~li~G~~~~~~~~---~~~~~yNs~~~~~~~g----~~~~~Y~K~~LVP 356 (518)
T Consensus 239 ~l~~~~~~~~~~Q~~f~~~~~~~~~~~~~~~p~~~G~~~~~~~~~~~~~~~~yNs~~~~~~~~~a~~~~~~~Y~K~~LVP 318 (441)
T TIGR00546 239 DLENSPDKLHESQSAFDLLKALKALVLSKGIPILIGAPDADPKGQKGEEYEYYNSVYLLDPGGKAVLEVVQRYDKVKLVP 318 (441)
T ss_pred CCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCEEECC
T ss_conf 66643211033673789999999998740984899630103788888743111258998488620035053538745435
Q ss_pred HHHHHC--CCCHHHHHHHHCCCC--CCCCCCCCCCCCEEECCC-CEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCC
Q ss_conf 133100--100001211100122--221013587762000122-00102221666558888512--69977999627755
Q gi|254780425|r 357 FAEYLP--YRNILKKLNLDFYMF--PLDYSSSDISPLLGLSEK-LRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSG 429 (518)
Q Consensus 357 FGEyiP--~~~~~~~l~~~~~~~--~~~~~~g~~~~~~~~~~~-~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~W 429 (518)
T Consensus 319 FGEy~P~~~~~~f~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~ICYE~~Fp~~~r~~~~~Ga~~L~~~tNDaW 398 (441)
T TIGR00546 319 FGEYIPFGLKFVFKWLSKLFFLASEQESFARGNGPQVLKLPGGAVKLAPLICYESIFPELVRALARQGAELLVNLTNDAW 398 (441)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 62326776333444776543200222331127887653447760277753115541168898742588328997400564
Q ss_pred CCCC-HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCEE
Q ss_conf 7676-28999999999999729919998559704699899808
Q gi|254780425|r 430 FMGS-GTDHSFRYAQIQAVEIGLPLIRATNNGVSAFLDERGQI 471 (518)
Q Consensus 430 f~~s-~~~qH~~~a~~RAiE~~r~~vra~ntGiS~~id~~G~i 471 (518)
T Consensus 399 f~~~~~~~QH~~~~~~RA~E~~~~~~Ra~NtG~sa~i~p~G~~ 441 (441)
T TIGR00546 399 FGDSSGPWQHFALARFRAIENGRPLVRAANTGISAVIDPRGRI 441 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCC
T ss_conf 3666167889999888876448548999606625898067889