HHsearch alignment for GI: 254780425 and conserved domain: TIGR03381
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=99.94 E-value=5e-26 Score=188.06 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=157.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCH--H------------HHHHHHHHHHH
Q ss_conf 321001244203555433335789987543101334668618983121011000--1------------12346677656
Q gi|254780425|r 243 PVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSI--V------------DQPSILKKIAS 308 (518)
Q Consensus 243 ~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~--~------------~~~~~~~~l~~ 308 (518)
T Consensus 1 mkvA~vQ~~~~----~d~~~Nl~~~~~~i~---~A~~~ga~livfPEl~~tgy~~~~~~~~~~~~a~~~~~~~~~~~l~~ 73 (279)
T TIGR03381 1 VTVAALQMACS----DDVETNIARAERLVR---EAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQA 73 (279)
T ss_pred CEEEEEECCCC----CCHHHHHHHHHHHHH---HHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHH
T ss_conf 98999945489----999999999999999---99988498999388766777544554447874032579899999999
Q ss_pred HHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 41079824201100123455751210000367321221112563342213310010000121110012222101358776
Q gi|254780425|r 309 VLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISP 388 (518)
Q Consensus 309 ~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~ 388 (518)
T Consensus 74 ~A~~~~i~i~~g~~e~---~~~~~yNt~~vi~~~G~i~~~yrK~hl-p~~~--------------~~~E~~~f~~G~~~~ 135 (279)
T TIGR03381 74 LAKELGVVIPVSFFEK---AGNAYYNSLAMIDADGSVLGVYRKSHI-PDGP--------------GYQEKFYFRPGDTGF 135 (279)
T ss_pred HHHHCCEEEEEEEEEE---ECCEEEEEEEEECCCCCEEEEEEEECC-CCCC--------------CEEEEEEECCCCCCC
T ss_conf 9987395999944786---088237889999899809999988538-9999--------------634787514888766
Q ss_pred CEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECC-CCCCCCC--HHHHHH-HHHHHHHHHCCCEEEEEECC---
Q ss_conf 200012200102221666558888512--69977999627-7557676--289999-99999999729919998559---
Q gi|254780425|r 389 LLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIID-DSGFMGS--GTDHSF-RYAQIQAVEIGLPLIRATNN--- 459 (518)
Q Consensus 389 ~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tN-d~Wf~~s--~~~qH~-~~a~~RAiE~~r~~vra~nt--- 459 (518)
T Consensus 136 ~v~~~~~~kiG~~ICyD~~fPe~~r~la~~Ga~ii~~Psa~~~~p~~~~~~~~~~w~~~~~arA~en~~~vv~an~~G~~ 215 (279)
T TIGR03381 136 KVWDTRYGRIGVGICWDQWFPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTE 215 (279)
T ss_pred CEEEECCCEEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCC
T ss_conf 15985893698766604357489999998699799988414687776556628999999999999829536510310035
Q ss_pred ----------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCC
Q ss_conf ----------704699899808777389982799999606768
Q gi|254780425|r 460 ----------GVSAFLDERGQIISSVYADRGASIDMHFQPKVR 492 (518)
Q Consensus 460 ----------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~ 492 (518)
T Consensus 216 ~~~~~~~~f~G~S~Iv~P~G~ila~~~~~~e~~i~a~iDl~~i 258 (279)
T TIGR03381 216 IGDGGEQTFYGSSFIADHTGELVAEAGRSEEAVLVATFDLDEI 258 (279)
T ss_pred CCCCCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEEEEHHHH
T ss_conf 7888876584983899999999876689987899999759999