HHsearch alignment for GI: 254780425 and conserved domain: cd07576
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=99.95 E-value=1.9e-26 Score=190.77 Aligned_cols=215 Identities=17% Similarity=0.203 Sum_probs=153.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH----------HHHHHHHHHHHHHCCC
Q ss_conf 210012442035554333357899875431013346686189831210110001----------1234667765641079
Q gi|254780425|r 244 VIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV----------DQPSILKKIASVLKIN 313 (518)
Q Consensus 244 ~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~----------~~~~~~~~l~~~~~~~ 313 (518)
T Consensus 1 kiA~~Q~~~~~g---D~~~N~~~~~~~i~~---A~~~ga~lvvfPE~~l~Gy~~~~~~~~~a~~~~~~~~~~l~~~A~~~ 74 (254)
T cd07576 1 RLALYQGPARDG---DVAANLARLDEAAAR---AAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRH 74 (254)
T ss_pred CEEEEECCCCCC---CHHHHHHHHHHHHHH---HHHCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 999998999889---999999999999999---99886979994888635898661234431147869999999999972
Q ss_pred CE-EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf 82-42011001234557512100003673212211125633422133100100001211100122221013587762000
Q gi|254780425|r 314 QL-LIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLLGL 392 (518)
Q Consensus 314 ~~-li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 392 (518)
T Consensus 75 ~i~iv~G~~e~----~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~E------------------~~~f~~G~~~~vf~- 131 (254)
T cd07576 75 GIAIVVGYPER----AGGAVYNAAVLIDEDGTVLANYRKTHLFGDSE------------------RAAFTPGDRFPVVE- 131 (254)
T ss_pred CCEEEEEEEEE----ECCEEEEEEEEECCCCEEEEEECCCCCCCCCC------------------CEEECCCCCCEEEE-
T ss_conf 98699989997----59978899999928983988571444688663------------------05883898634668-
Q ss_pred CCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC---------CCC
Q ss_conf 12200102221666558888512--6997799962775576762899999999999972991999855---------970
Q gi|254780425|r 393 SEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATN---------NGV 461 (518)
Q Consensus 393 ~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~n---------tGi 461 (518)
T Consensus 132 ~~~~~iG~~IC~D~~fpe~~r~la~~Ga~ii~~psa--~~~~~~-~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~ 208 (254)
T cd07576 132 LRGLRVGLLICYDVEFPELVRALALAGADLVLVPTA--LMEPYG-FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGL 208 (254)
T ss_pred ECCEEEEEEEECCCCCCHHHHHHHHCCCCEEEECCC--CCCCHH-HHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCC
T ss_conf 898799988861543879999999869979998878--888520-69999999999982994999966415898077287
Q ss_pred CEEECCCCEEEEECCCCCCEEEEEEECCCC
Q ss_conf 469989980877738998279999960676
Q gi|254780425|r 462 SAFLDERGQIISSVYADRGASIDMHFQPKV 491 (518)
Q Consensus 462 S~~id~~G~i~~~~~~~~~~~l~~~v~~~~ 491 (518)
T Consensus 209 S~ii~P~G~ila~~~~-~e~~~~adiD~~~ 237 (254)
T cd07576 209 SSIAGPDGTVLARAGR-GEALLVADLDPAA 237 (254)
T ss_pred EEEEECCCEEEEECCC-CCEEEEEEECHHH
T ss_conf 6999189829876699-8869999971999