HHsearch alignment for GI: 254780425 and conserved domain: cd07578
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.94 E-value=5.5e-26 Score=187.81 Aligned_cols=214 Identities=19% Similarity=0.189 Sum_probs=148.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCH-HH-----------HHHHHHHHHHHH
Q ss_conf 321001244203555433335789987543101334668618983121011000-11-----------234667765641
Q gi|254780425|r 243 PVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSI-VD-----------QPSILKKIASVL 310 (518)
Q Consensus 243 ~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~-~~-----------~~~~~~~l~~~~ 310 (518)
T Consensus 1 fkvA~vQ~~~~~g---d~~~Nl~~~~~~i~~---A~~~ga~lvvfPEl~~tGy~~~~~~~~~~~~e~~~g~~~~~l~~~A 74 (258)
T cd07578 1 YKAAAIQFEPEMG---EKERNIERLLALCEE---AARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELA 74 (258)
T ss_pred CEEEEEECCCCCC---CHHHHHHHHHHHHHH---HHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9899996888788---999999999999999---9988697999898963479866988989877648988999999999
Q ss_pred CCCCEEEE-CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 07982420-11001234557512100003673212211125633422133100100001211100122221013587762
Q gi|254780425|r 311 KINQLLIV-GSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPL 389 (518)
Q Consensus 311 ~~~~~li~-G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~ 389 (518)
T Consensus 75 ~~~~i~iv~G~~e~~--~~~g~~yNt~~~i~~~G-~i~~yrK~h~~-~~E------------------~~~~~~G~~~~~ 132 (258)
T cd07578 75 REHDCYIVVGLPEVD--SRSGIYYNSAVLIGPSG-VIGRHRKTHPY-ISE------------------PKWAADGDLGHQ 132 (258)
T ss_pred HHCCCCEEEEEEEEE--CCCCCEEEEEEEECCCC-EEEEEECCCCC-CCC------------------CCCCCCCCCCCE
T ss_conf 873992797654688--79995999999983995-89998345776-342------------------311048997623
Q ss_pred EEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC---------
Q ss_conf 00012200102221666558888512--6997799962775576762899999999999972991999855---------
Q gi|254780425|r 390 LGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATN--------- 458 (518)
Q Consensus 390 ~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~n--------- 458 (518)
T Consensus 133 vf~t~~gkiG~~ICyD~~fpE~~R~la~~Ga~ii~~psa--~~~~~~~~~~~---~arA~eN~~~vv~~n~~G~~~~~~~ 207 (258)
T cd07578 133 VFDTEIGRIALLICMDIHFFETARLLALGGADVICHISN--WLAERTPAPYW---INRAFENGCYLIESNRWGLERGVQF 207 (258)
T ss_pred EEEECCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC--CCCCCCHHHHH---HHHHHHCCCEEEEECCCCCCCCEEE
T ss_conf 899589637767874653679999999879989998667--88878727999---9999976987999774326788078
Q ss_pred CCCCEEECCCCEEEEECCCCCCEEEEEEECCC
Q ss_conf 97046998998087773899827999996067
Q gi|254780425|r 459 NGVSAFLDERGQIISSVYADRGASIDMHFQPK 490 (518)
Q Consensus 459 tGiS~~id~~G~i~~~~~~~~~~~l~~~v~~~ 490 (518)
T Consensus 208 ~G~S~Iv~P~G~vla~~~~-~e~i~~adiDl~ 238 (258)
T cd07578 208 SGGSCIIEPDGTIQASIDS-GDGVALGEIDLD 238 (258)
T ss_pred ECCEEEECCCCCEEECCCC-CCEEEEEEEEHH
T ss_conf 3323999899878852799-986999996079