HHsearch results for GI: 254780425 and protein with PDBid: 1uf5_A

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=100.00  E-value=3.3e-34  Score=239.99  Aligned_cols=243  Identities=14%  Similarity=0.148  Sum_probs=178.6

Q ss_pred             CCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH-----------------HHHH
Q ss_conf             55321001244-20355543333578998754310133466861898312101100011-----------------2346
Q gi|254780425|r  241 ISPVIRIVQPG-INPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD-----------------QPSI  302 (518)
Q Consensus       241 ~~~~V~iVQpn-i~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~-----------------~~~~  302 (518)
                      .+++|++.|.+ +...  .+++..++++.++.+.   +.+.++|||||||.+++-+...                 ....
T Consensus         2 ~~~~ia~~Q~~pi~~~--~~~~~~l~r~~~li~~---A~~~gadlvvfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~   76 (303)
T 1uf5_A            2 RQMILAVGQQGPIARA--ETREQVVVRLLDMLTK---AASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPV   76 (303)
T ss_dssp             CEEEEEEEEBCCCCTT--CCHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTT
T ss_pred             CEEEEEEECCCCCCCC--CCHHHHHHHHHHHHHH---HHHCCCCEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCHH
T ss_conf             5799999846786898--6899999999999999---9988794999588951358702210387777666655058889


Q ss_pred             HHHHHHHHCC-CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCC
Q ss_conf             6776564107-982420110012345575121000036732122111256334221331001000012111001222210
Q gi|254780425|r  303 LKKIASVLKI-NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDY  381 (518)
Q Consensus       303 ~~~l~~~~~~-~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~  381 (518)
                      .+.+.+.+++ +..+++|........++.++|||+++++++|+++.+|+|+||+|++||.|++.+...-.       ..+
T Consensus        77 ~~~l~~~A~~~~i~v~~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~L~~~~e~~~~~~~~~~e~-------~~~  149 (303)
T 1uf5_A           77 VRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK-------RYF  149 (303)
T ss_dssp             THHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHH-------HHC
T ss_pred             HHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEE-------EEE
T ss_conf             9999999997597799853357650789808999999848986888762012799765434566320001-------256


Q ss_pred             CCCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCC-CC-----C-HHHHHHHHHHHHHHHCCCE
Q ss_conf             1358776200012200102221666558888512--699779996277557-67-----6-2899999999999972991
Q gi|254780425|r  382 SSSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGF-MG-----S-GTDHSFRYAQIQAVEIGLP  452 (518)
Q Consensus       382 ~~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf-~~-----s-~~~qH~~~a~~RAiE~~r~  452 (518)
                      .+++........++.++|.+||||..||+..|.+  +||+++++++|..+. ..     . ...+|...+|.||+||+.+
T Consensus       150 ~~~~~~~~~~~~~~~~ig~~IC~D~~~pe~~r~la~~Ga~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~  229 (303)
T 1uf5_A          150 EPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAW  229 (303)
T ss_dssp             CCCSSCSCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCE
T ss_pred             ECCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             05887763799468478865434300669999999889929998157755456542200121002465677677455973


Q ss_pred             EEEEECC---------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCH
Q ss_conf             9998559---------704699899808777389982799999606768768
Q gi|254780425|r  453 LIRATNN---------GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSF  495 (518)
Q Consensus       453 ~vra~nt---------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~  495 (518)
                      ++++.++         |.|+++||+|+++++.+.++++++.+++.+..-...
T Consensus       230 vv~~n~~g~~~~~~~~G~S~I~~p~G~vla~~~~~~e~il~a~iDl~~~~~~  281 (303)
T 1uf5_A          230 SAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCREL  281 (303)
T ss_dssp             EEEEEBCEEETTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHH
T ss_pred             EEEECCCCCCCCCEECCCCEEEECCCCEEEECCCCCCEEEEEEECHHHHHHH
T ss_conf             9996676877782263662999489999987689988899999858999999