HHsearch results for GI: 254780425 and protein with PDBid: 3ilv_A
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.84 E-value=8.7e-20 Score=145.99 Aligned_cols=233 Identities=11% Similarity=0.011 Sum_probs=148.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH----HHHHH----HHHHHHHHCC
Q ss_conf 553210012442035554333357899875431013346686189831210110001----12346----6776564107
Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV----DQPSI----LKKIASVLKI 312 (518)
Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~----~~~~~----~~~l~~~~~~ 312 (518)
.+++|++.|.|.-+. |.+...++..+..+. +.+.++||||+||-++.-+.- ..+.+ .+.+.+++++
T Consensus 4 ~~~rIa~aQ~n~~~g---D~~~N~~~i~~~i~~---A~~~gadlvvfPEL~ltGY~~~DL~~~~~~~~~~~~~l~~la~~ 77 (634)
T 3ilv_A 4 STIRIGGAAVNQTPI---DWENNVKNILDAIEE---AKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAAS 77 (634)
T ss_dssp CEEEEEEEEECCCTT---CHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCC---CHHHHHHHHHHHHHH---HHHCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 860899995789868---799999999999999---99879969995888201599778740888999999999999986
Q ss_pred --CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCC---
Q ss_conf --982420110012345575121000036732122111256334221331001000012111001222210135877---
Q gi|254780425|r 313 --NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDIS--- 387 (518)
Q Consensus 313 --~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~--- 387 (518)
+..+++|.+..+ +++.||+++++. +|++..+|+|+||--++||---|.+-++-.. ....+..++..
T Consensus 78 ~~~i~vivG~p~~~----~~~lyNsa~vi~-~G~i~~~~~K~~Lpny~~fdE~R~F~~g~~~----~~~~~~~~~~~~p~ 148 (634)
T 3ilv_A 78 CTDITVSLGLPMRI----AGITYNCVCLVE-NGIVKGFSAKQFLANEGVHYETRWFTAWPRN----HTTTFLYNDVKYPF 148 (634)
T ss_dssp CTTSEEEEEEEEEE----TTEEEEEEEEEE-TTEEEEEEECSSCCCSTTCCGGGTCCCCCTT----CEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEEEE----CCEEEEEEEEEE-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCC----CCEEEECCCCCCCC
T ss_conf 69988999789978----993899999998-9999999938448999874635103678878----84389438743677
Q ss_pred -CCEEECCCCEEECCCCHHHHHHHHH-HC--CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--
Q ss_conf -6200012200102221666558888-51--26997799962775576762899999999999972991999855970--
Q gi|254780425|r 388 -PLLGLSEKLRLYPLLFSDALFHQDI-NN--LENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV-- 461 (518)
Q Consensus 388 -~~~~~~~~~~~~~~ICyE~~f~~~~-r~--~~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi-- 461 (518)
..+...++.++|..||||.-+|+-. +. .+|+++++|++...+- .....+...+.+-||.|++.+++.+...|-
T Consensus 149 g~~i~~~~g~~iGv~ICeD~w~~~~~~~~~~~~gadli~n~sAsp~~-~~k~~~r~~l~~~~a~~~~~~~vy~N~vG~~~ 227 (634)
T 3ilv_A 149 GDVLYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFA-FGKSAIRYDLVIGGSERFDCTYVYANLLGNEA 227 (634)
T ss_dssp ESCCEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCC-TTHHHHHHHHHHHHHHHTTSEEEEEECEEESS
T ss_pred CCEEEEECCCEEEEECCCCCCCCCHHHHHHCCCCCEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf 77589833635765304554667546655203574588445555444-32499999999999986287089515655435
Q ss_pred -------CEEECCCCEEEEECCCCC---CEEEEEEECC
Q ss_conf -------469989980877738998---2799999606
Q gi|254780425|r 462 -------SAFLDERGQIISSVYADR---GASIDMHFQP 489 (518)
Q Consensus 462 -------S~~id~~G~i~~~~~~~~---~~~l~~~v~~ 489 (518)
|.+||++|+++++.+.+. ..+...++..
T Consensus 228 ~~~~~gGs~~i~~~G~~v~~~~~f~~~~~~~~~~di~~ 265 (634)
T 3ilv_A 228 GRMIYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIAT 265 (634)
T ss_dssp SSCEEECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC
T ss_pred CCCCCCCCEEEECCCCHHHHCCCCCEEEEEEEEEECCC
T ss_conf 66351896699589817653666641003589986035