HHSEARCH alignment of GI: 254780425 and SCOP domain: d1emsa2

Alignment
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=99.95  E-value=2.3e-27  Score=193.86  Aligned_cols=234  Identities=16%  Similarity=0.047  Sum_probs=166.7

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC-CCCCHHH---------HHHHHHHHHHHH
Q ss_conf             553210012442035554333357899875431013346686189831210-1100011---------234667765641
Q gi|254780425|r  241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLP-FPFSIVD---------QPSILKKIASVL  310 (518)
Q Consensus       241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa-~p~~~~~---------~~~~~~~l~~~~  310 (518)
                      ...+|+++|.|...    |.+...++..++.+   ++.+.++|||||||.+ ++....+         +....+.+.+.+
T Consensus         4 ~~~rVA~~Q~~~~~----d~~~N~~~i~~~i~---~A~~~gadlvvfPE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~a   76 (271)
T d1emsa2           4 GRHFIAVCQMTSDN----DLEKNFQAAKNMIE---RAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELA   76 (271)
T ss_dssp             SEEEEEEECBCCCS----CHHHHHHHHHHHHH---HHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCC----CHHHHHHHHHHHHH---HHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             88699999588988----99999999999999---999785969998866212187978999887752146777665420


Q ss_pred             CCCC-EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             0798-242011001234557512100003673212211125633422133100100001211100122221013587762
Q gi|254780425|r  311 KINQ-LLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPL  389 (518)
Q Consensus       311 ~~~~-~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~  389 (518)
                      +++. .+++|.......+++.++||++++++++|++..+|+|+||.|+.++-+.+..          ...-+.+|+....
T Consensus        77 ~~~~i~v~~G~~~~~~~~~~~~~yNsa~vi~~~g~i~~~~~K~~l~~~~~~~~~~~~----------e~~~~~~g~~~~~  146 (271)
T d1emsa2          77 RKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM----------ESEFSKAGTEMIP  146 (271)
T ss_dssp             HHTTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEE----------GGGTCCCCCSCCC
T ss_pred             HCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCEE----------CCCCCCCCCCCCC
T ss_conf             003432224301466304788546789999479668774224024554445653100----------1112468854430


Q ss_pred             EEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC--------
Q ss_conf             00012200102221666558888512--69977999627755767628999999999999729919998559--------
Q gi|254780425|r  390 LGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN--------  459 (518)
Q Consensus       390 ~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~nt--------  459 (518)
                      ....+..+++.+||||..||+..|.+  ++++++++++.+.+  +....++....+.||.|++.+++.+.+.        
T Consensus       147 v~~~~~~~~g~~iC~D~~~~e~~~~~~~~ga~~i~~p~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~n~~g~~~~~~~  224 (271)
T d1emsa2         147 PVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTL--NTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQ  224 (271)
T ss_dssp             CEEETTEEECCCCGGGGGCHHHHHHHHHTTCSEEECCBCCCH--HHHHHHHHHHHHHHHHHHTCEEEECBBEEEEETTEE
T ss_pred             EEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf             251277411442132211228999998605728986353555--432046799999877630443000111246789977


Q ss_pred             --CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCC
Q ss_conf             --70469989980877738998279999960676876
Q gi|254780425|r  460 --GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDS  494 (518)
Q Consensus       460 --GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T  494 (518)
                        |.|+++||+|+|+++.+. +++++.+++.+..-.+
T Consensus       225 ~~G~S~I~~P~G~il~~~~~-~e~il~adiDl~~i~~  260 (271)
T d1emsa2         225 SYGHSMVVDPWGAVVAQCSE-RVDMCFAEIDLSYVDT  260 (271)
T ss_dssp             EECCCEEECTTSCEEEECCS-SSCEEEEEEEHHHHHH
T ss_pred             EEEEEEEECCCCCEEEECCC-CCEEEEEEECHHHHHH
T ss_conf             74546999499948987799-9829999971899999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]