HHSEARCH alignment of GI: 254780425 and SCOP domain: d1j31a_

Alignment
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.96  E-value=1.3e-28  Score=202.06  Aligned_cols=211  Identities=13%  Similarity=0.051  Sum_probs=154.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH-------------HHHHHHHHHHH
Q ss_conf             32100124420355543333578998754310133466861898312101100011-------------23466776564
Q gi|254780425|r  243 PVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD-------------QPSILKKIASV  309 (518)
Q Consensus       243 ~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~-------------~~~~~~~l~~~  309 (518)
                      ++|+++|.+...   .|.++.+++..++.+.   +.+.++||||+||.+++-+...             +....+.+.+.
T Consensus         2 ~ria~~Q~~~~~---~d~e~nl~~i~~~i~~---A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (262)
T d1j31a_           2 VKVGYIQMEPKI---LELDKNYSKAEKLIKE---ASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEGETTTFLMEL   75 (262)
T ss_dssp             EEEEEEECCCCT---TCHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTTCSCCSSHHHHHTTCBCTTTSHHHHHHHHH
T ss_pred             EEEEEEECCCCC---CCHHHHHHHHHHHHHH---HHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             799999789987---8999999999999999---9988998999488654578602356765433201468999999985


Q ss_pred             HCCCCE-EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             107982-4201100123455751210000367321221112563342213310010000121110012222101358776
Q gi|254780425|r  310 LKINQL-LIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISP  388 (518)
Q Consensus       310 ~~~~~~-li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~  388 (518)
                      +++++. ++.|....+    ++++||+++++++ |++..+|+|+||++..|.                   .+.+|+...
T Consensus        76 A~~~~i~i~~g~~~~~----~~~~~n~~~~i~~-g~~~~~y~K~~l~~~e~~-------------------~~~~G~~~~  131 (262)
T d1j31a_          76 ARELGLYIVAGTAEKS----GNYLYNSAVVVGP-RGYIGKYRKIHLFYREKV-------------------FFEPGDLGF  131 (262)
T ss_dssp             HHHHTCEEEEEEEEEE----TTEEEEEEEEEET-TEEEEEEECSSCCTTHHH-------------------HCCCCCSCS
T ss_pred             HHCCCCEEEEEEEECC----CCCCCCCCEEEEE-EEEEEEEEEEECCCCCCE-------------------EECCCCCCC
T ss_conf             3126824775431000----1234543069985-227999865655766724-------------------677899875


Q ss_pred             CEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC--------
Q ss_conf             200012200102221666558888512--6997799962775576762899999999999972991999855--------
Q gi|254780425|r  389 LLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATN--------  458 (518)
Q Consensus       389 ~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~n--------  458 (518)
                      .+...++.++|.+||||..||+..|..  +|++++++++++.+-  .  +  ..+.+.||+||+.+++.|..        
T Consensus       132 ~v~~~~~~~ig~~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~--~--~--~~~~~~rA~en~~~vv~~n~~G~~~~~~  205 (262)
T d1j31a_         132 KVFDIGFAKVGVMICFDWFFPESARTLALKGAEIIAHPANLVMP--Y--A--PRAMPIRALENRVYTITADRVGEERGLK  205 (262)
T ss_dssp             CEEECSSCEEEECCGGGGGSHHHHHHHHHTTCSEEEEECCCCSS--C--H--HHHHHHHHHHHTCEEEEECCCSEETTEE
T ss_pred             EEEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--C--C--HHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             58996895699998545642388998887403345677333464--2--0--4666556540643289972355458852


Q ss_pred             -CCCCEEECCCCEEEEECCCCCCEEEEEEECC
Q ss_conf             -9704699899808777389982799999606
Q gi|254780425|r  459 -NGVSAFLDERGQIISSVYADRGASIDMHFQP  489 (518)
Q Consensus       459 -tGiS~~id~~G~i~~~~~~~~~~~l~~~v~~  489 (518)
                       .|-|+++||+|+++++.+.++++++.+++.+
T Consensus       206 ~~G~S~i~~p~G~~l~~~~~~~e~i~~a~iDl  237 (262)
T d1j31a_         206 FIGKSLIASPKAEVLSIASETEEEIGVVEIDL  237 (262)
T ss_dssp             CCCCCEEECTTSCEEEECCSSCCEEEEEEECH
T ss_pred             CCCCCEEEECCCCEEEECCCCCCEEEEEEEEC
T ss_conf             26788899399989987689987799999981


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]