RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780425|ref|YP_003064838.1| apolipoprotein
N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(518 letters)
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain,
BC011709, protein structure initiative, PSI-2; NMR {Homo
sapiens} (A:)
Length = 160
Score = 30.5 bits (68), Expect = 0.57
Identities = 6/66 (9%), Positives = 17/66 (25%), Gaps = 9/66 (13%)
Query: 377 FPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDSGFMGSGTD 436
+ + ++ D+ ++ + I + MG+G
Sbjct: 3 HHHHHLEASSLNEDPEGSRITYV---------KGDLFACPKTDSLAHCISEDCRMGAGIA 53
Query: 437 HSFRYA 442
F+
Sbjct: 54 VLFKKK 59
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 29.7 bits (66), Expect = 0.98
Identities = 18/156 (11%), Positives = 43/156 (27%), Gaps = 30/156 (19%)
Query: 197 PALFGTRRDVNIGIILS---STLLILHIAYGWWILTEDSKSSLKFEKISPVIRIVQPGIN 253
L R++ IG S T A+ +L+ P + P
Sbjct: 152 LLLSNPPRNM-IGQSQSGTGKTA-----AFALTMLSRVDA-----SVPKPQAICLAPSRE 200
Query: 254 PAIK-EDREKILERYLSLTALPVSAGE------LEPVIIVWAYLPFPFSIVDQPSILKKI 306
A + D + +Y + ++ I++ P +++D + ++
Sbjct: 201 LARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIG----TPGTVMDL--MKRRQ 254
Query: 307 ASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSK 342
I ++ + + + I
Sbjct: 255 LDARDIKVFVL---DEADNMLDQQGLGDQSMRIKHL 287
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain,
ADP-ribose binding, rossmann fold, structural genomics,
NPPSFA; NMR {Homo sapiens} (A:)
Length = 149
Score = 28.8 bits (64), Expect = 1.8
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 407 LFHQDINNLENVSAILNIIDDSGFMGSGTDHSFRYA 442
D+ ++ + I + MG+G F+
Sbjct: 13 YVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKK 48
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 2.30A
{Porphyromonas gingivalis W83} (A:1-107,A:270-291)
Length = 129
Score = 28.6 bits (64), Expect = 2.0
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 226 WILTEDSKSSLKFEKISPVIRIVQPGINPAIKEDREKILER 266
W + ++ KS + R GINP +DR +I
Sbjct: 14 WCIAKEGKS---------LGRFQTSGINPFQ-QDRNEIDTA 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 27.8 bits (62), Expect = 3.2
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 25/51 (49%)
Query: 306 IASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVP 356
+A V+ I L+ E+V FY +G + A VP
Sbjct: 2 LADVMSIESLV-------EVV-----FY--------RG--MTMQVA---VP 27
>1w63_M Adaptor-related protein complex 1, MU 1 subunit;
endocytosis, clathrin adaptor, transport, coated PITS;
4.0A {Mus musculus} (M:1-146)
Length = 146
Score = 27.7 bits (61), Expect = 3.9
Identities = 15/119 (12%), Positives = 41/119 (34%), Gaps = 22/119 (18%)
Query: 334 KSIYIINSKGEILASSNAKHLVP----------------------FAEYLPYRNILKKLN 371
++Y+++ KG++L N + V + R + K N
Sbjct: 4 SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHN 63
Query: 372 LDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDSGF 430
+ + ++ L + ++++ F + +N + +L+ + D G+
Sbjct: 64 NLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGY 122
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus,
glycoprotein, membrane, structural genomics, PSI-2,
protein structure initiative; HET: BOG; 2.10A {Homo
sapiens} (A:1-245,A:344-490)
Length = 392
Score = 27.3 bits (60), Expect = 5.2
Identities = 21/192 (10%), Positives = 47/192 (24%), Gaps = 30/192 (15%)
Query: 40 SFVSFTLLIWLLDGISSNLGRMSAISRVGSSFFVGWLFGVGYFLAGLWWVREG------- 92
SF +++++ G + S VG +F + L W+
Sbjct: 67 SFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVG 126
Query: 93 ----------------IVDQIGSRFPFWGVVLFFVMISFLLAIF-YGVATSLASLLWSTG 135
+ + +++ L A+ + + L
Sbjct: 127 VENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGS 186
Query: 136 M-GRIC--VFACAVGFCEWLRSVLGIGTWNAIGYAAMPIPVMMQSVHWIGLFGMNALSV- 191
M F V + R++ Y + ++ W+ N+
Sbjct: 187 MTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISG 246
Query: 192 --FCFASPALFG 201
P + G
Sbjct: 247 INNLHGIPGIIG 258
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural
genomics, dimer, two domain organization, PSI, protein
structure initiative; HET: XYL; 1.90A {Saccharomyces
cerevisiae} (A:1-220)
Length = 220
Score = 27.0 bits (59), Expect = 6.0
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 22/111 (19%)
Query: 333 YKSIYIINSKGEI-LASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLLG 391
S+ K I L +N + E +P+ I L + + L
Sbjct: 7 RHSLLNGVKKXRIILCDTNEVVTNLWQESIPHAYIQNDKYLCIH-------HGHLQSLXD 59
Query: 392 LSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDSGFMGSGTDHSFRYA 442
I++ + AI++ + G++G G D +
Sbjct: 60 SX-------------RKGDAIHH-GHSYAIVSPGNSYGYLGGGFDKALYNY 96
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Rattus
norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* (M:1-146)
Length = 146
Score = 26.9 bits (59), Expect = 6.7
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 334 KSIYIINSKGEILAS---------------------SNAKHLVPFAEYLPYRNILKKLNL 372
++I N KGE+L S + + P K +
Sbjct: 3 GGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSN 62
Query: 373 DFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDSGF 430
+ + + L + + F NN + +L+ I D G+
Sbjct: 63 IWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.328 0.143 0.438
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,973,285
Number of extensions: 179461
Number of successful extensions: 574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 42
Length of query: 518
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 426
Effective length of database: 1,845,989
Effective search space: 786391314
Effective search space used: 786391314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.1 bits)