RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (518 letters) >2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} (A:) Length = 160 Score = 30.5 bits (68), Expect = 0.57 Identities = 6/66 (9%), Positives = 17/66 (25%), Gaps = 9/66 (13%) Query: 377 FPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDSGFMGSGTD 436 + + ++ D+ ++ + I + MG+G Sbjct: 3 HHHHHLEASSLNEDPEGSRITYV---------KGDLFACPKTDSLAHCISEDCRMGAGIA 53 Query: 437 HSFRYA 442 F+ Sbjct: 54 VLFKKK 59 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 29.7 bits (66), Expect = 0.98 Identities = 18/156 (11%), Positives = 43/156 (27%), Gaps = 30/156 (19%) Query: 197 PALFGTRRDVNIGIILS---STLLILHIAYGWWILTEDSKSSLKFEKISPVIRIVQPGIN 253 L R++ IG S T A+ +L+ P + P Sbjct: 152 LLLSNPPRNM-IGQSQSGTGKTA-----AFALTMLSRVDA-----SVPKPQAICLAPSRE 200 Query: 254 PAIK-EDREKILERYLSLTALPVSAGE------LEPVIIVWAYLPFPFSIVDQPSILKKI 306 A + D + +Y + ++ I++ P +++D + ++ Sbjct: 201 LARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIG----TPGTVMDL--MKRRQ 254 Query: 307 ASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSK 342 I ++ + + + I Sbjct: 255 LDARDIKVFVL---DEADNMLDQQGLGDQSMRIKHL 287 >2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 149 Score = 28.8 bits (64), Expect = 1.8 Identities = 6/36 (16%), Positives = 13/36 (36%) Query: 407 LFHQDINNLENVSAILNIIDDSGFMGSGTDHSFRYA 442 D+ ++ + I + MG+G F+ Sbjct: 13 YVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKK 48 >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} (A:1-107,A:270-291) Length = 129 Score = 28.6 bits (64), Expect = 2.0 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 10/41 (24%) Query: 226 WILTEDSKSSLKFEKISPVIRIVQPGINPAIKEDREKILER 266 W + ++ KS + R GINP +DR +I Sbjct: 14 WCIAKEGKS---------LGRFQTSGINPFQ-QDRNEIDTA 44 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 27.8 bits (62), Expect = 3.2 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 25/51 (49%) Query: 306 IASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVP 356 +A V+ I L+ E+V FY +G + A VP Sbjct: 2 LADVMSIESLV-------EVV-----FY--------RG--MTMQVA---VP 27 >1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} (M:1-146) Length = 146 Score = 27.7 bits (61), Expect = 3.9 Identities = 15/119 (12%), Positives = 41/119 (34%), Gaps = 22/119 (18%) Query: 334 KSIYIINSKGEILASSNAKHLVP----------------------FAEYLPYRNILKKLN 371 ++Y+++ KG++L N + V + R + K N Sbjct: 4 SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHN 63 Query: 372 LDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDSGF 430 + + ++ L + ++++ F + +N + +L+ + D G+ Sbjct: 64 NLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGY 122 >3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membrane, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} (A:1-245,A:344-490) Length = 392 Score = 27.3 bits (60), Expect = 5.2 Identities = 21/192 (10%), Positives = 47/192 (24%), Gaps = 30/192 (15%) Query: 40 SFVSFTLLIWLLDGISSNLGRMSAISRVGSSFFVGWLFGVGYFLAGLWWVREG------- 92 SF +++++ G + S VG +F + L W+ Sbjct: 67 SFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVG 126 Query: 93 ----------------IVDQIGSRFPFWGVVLFFVMISFLLAIF-YGVATSLASLLWSTG 135 + + +++ L A+ + + L Sbjct: 127 VENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGS 186 Query: 136 M-GRIC--VFACAVGFCEWLRSVLGIGTWNAIGYAAMPIPVMMQSVHWIGLFGMNALSV- 191 M F V + R++ Y + ++ W+ N+ Sbjct: 187 MTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISG 246 Query: 192 --FCFASPALFG 201 P + G Sbjct: 247 INNLHGIPGIIG 258 >1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, protein structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} (A:1-220) Length = 220 Score = 27.0 bits (59), Expect = 6.0 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 22/111 (19%) Query: 333 YKSIYIINSKGEI-LASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLLG 391 S+ K I L +N + E +P+ I L + + L Sbjct: 7 RHSLLNGVKKXRIILCDTNEVVTNLWQESIPHAYIQNDKYLCIH-------HGHLQSLXD 59 Query: 392 LSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDSGFMGSGTDHSFRYA 442 I++ + AI++ + G++G G D + Sbjct: 60 SX-------------RKGDAIHH-GHSYAIVSPGNSYGYLGGGFDKALYNY 96 >2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* (M:1-146) Length = 146 Score = 26.9 bits (59), Expect = 6.7 Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 21/118 (17%) Query: 334 KSIYIINSKGEILAS---------------------SNAKHLVPFAEYLPYRNILKKLNL 372 ++I N KGE+L S + + P K + Sbjct: 3 GGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSN 62 Query: 373 DFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSAILNIIDDSGF 430 + + + L + + F NN + +L+ I D G+ Sbjct: 63 IWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.328 0.143 0.438 Gapped Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,973,285 Number of extensions: 179461 Number of successful extensions: 574 Number of sequences better than 10.0: 1 Number of HSP's gapped: 570 Number of HSP's successfully gapped: 42 Length of query: 518 Length of database: 4,956,049 Length adjustment: 92 Effective length of query: 426 Effective length of database: 1,845,989 Effective search space: 786391314 Effective search space used: 786391314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 57 (26.1 bits)