HHsearch alignment for GI: 254780426 and conserved domain: COG3620
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription].
Probab=98.93 E-value=5.5e-09 Score=78.76 Aligned_cols=141 Identities=16% Similarity=0.247 Sum_probs=104.3
Q ss_pred HCCCCCHHHHH---HHHHHHCC--CCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHH
Q ss_conf 76898989999---99987304--77576413120012999863010367789798659817998418866422410299
Q gi|254780426|r 66 LEGIFSETEKE---IFNNILRF--RKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMR 140 (320)
Q Consensus 66 ~~G~i~~~E~~---ii~~vl~l--~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~k 140 (320)
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~ 114 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITEN 114 (187)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCEEEHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCEEEC--CEEEEEECHH
T ss_conf 6388793089999999999985466675766535--87058772466999999999759752754108--8645331498
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHCCC-CEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHH
Q ss_conf 999876622356432233345767885156-5797178851232343201356511654077662046675889999874
Q gi|254780426|r 141 DVISYISHMYAKTNNINLNIQLSESNLIKN-ILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMR 219 (320)
Q Consensus 141 Dll~~~~~~~~~~~~~~~~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivG 219 (320)
T Consensus 115 ~iv~~~le~~e~------i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~---AVlV~e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 115 DIVRALLEGMES------IRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP---AVLVVENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHHHHHCCCCC------HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC---EEEEEECCCEEEEEEHHHHHHHHHC
T ss_conf 999997304221------2112189885588876799998799999984198---3899868936888759999998724