HHsearch alignment for GI: 254780426 and conserved domain: cd04583
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.38 E-value=1.1e-12 Score=102.85 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=93.2
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf 129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP 175 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp 175 (320)
T Consensus 2 r~pitv~~~~tv~eal~~m~~~~~~~l~Vvd~~~-~lvGivt~~di~~~~~------------~~~~v~~im~~~~~tv~ 68 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDN-KLLGIVSLESLEQAYK------------EAKSLEDIMLEDVFTVQ 68 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCC-EEEEEEEHHHHHHCCC------------CCCEEEECCEEEEEEEC
T ss_conf 9899979939799999999973997899995899-8999998104343005------------89678751262028974
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf 78851232343201356511654077662046675889999
Q gi|254780426|r 176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ 216 (320)
T Consensus 69 ~~~~~~~a~~~m~~~~~~~lPVVd~~~~lvGiiT~~dll~t 109 (109)
T cd04583 69 PDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVDT 109 (109)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 89999999999985598388899649999999996882376