HHsearch alignment for GI: 254780426 and conserved domain: cd04588
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.90 E-value=5.3e-05 Score=52.65 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=53.4
Q ss_pred CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCH
Q ss_conf 56579717885123234320135651165407766204667588999987422210000000012467733783045359
Q gi|254780426|r 169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDL 248 (320)
Q Consensus 169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l 248 (320)
T Consensus 1 r~vvtv~p~~sl~ea~~~m~~~~i~~~pVvd~-~~lvGiit~~Di~~~~~~~~~~---~~V~~~--M~~~~~tv~~d~~l 74 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLEL---AKVKDV--MTKDVITIDEDEQL 74 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCC---CHHHHH--CCCCCCEECCCCCH
T ss_conf 99479689498999999999709988999989-9999999668989998737977---803452--04897298589969
Q ss_pred HHHHHHH
Q ss_conf 9999982
Q gi|254780426|r 249 EELAKII 255 (320)
Q Consensus 249 ~~l~~~l 255 (320)
T Consensus 75 ~~~~~~m 81 (110)
T cd04588 75 YDAIRLM 81 (110)
T ss_pred HHHHHHH
T ss_conf 9999999