HHsearch alignment for GI: 254780426 and conserved domain: cd04592
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.37 E-value=2.2e-06 Score=61.70 Aligned_cols=106 Identities=9% Similarity=0.034 Sum_probs=72.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCC-C---CC----------C
Q ss_conf 12999863010367789798659817998418866422410299999876622356432233-3---45----------7
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINL-N---IQ----------L 162 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~-~---~~----------~ 162 (320)
T Consensus 1 t~~vtV~p~ttv~EA~~lM~~~~~~~~~VVD~~~-~L~GIvt~gDi~R~~~~~~~~~~~~~~~~~~~~~~~vs~v~t~~~ 79 (133)
T cd04592 1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDD-FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-CEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 9459989998599999999981886579983899-789997879999998762356456320001244432334564203
Q ss_pred CHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 67885156579717885123234320135651165407766
Q gi|254780426|r 163 SESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGG 203 (320)
Q Consensus 163 ~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~ 203 (320)
T Consensus 80 ~~~~~~~~~~tv~pd~~l~~a~~lM~~~~i~~LPVV~~~~~ 120 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred EECCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCC
T ss_conf 62551100389789999999999999869885876707766