HHsearch alignment for GI: 254780426 and conserved domain: cd04592

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.37  E-value=2.2e-06  Score=61.70  Aligned_cols=106  Identities=9%  Similarity=0.034  Sum_probs=72.4

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCC-C---CC----------C
Q ss_conf             12999863010367789798659817998418866422410299999876622356432233-3---45----------7
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINL-N---IQ----------L  162 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~-~---~~----------~  162 (320)
T Consensus         1 t~~vtV~p~ttv~EA~~lM~~~~~~~~~VVD~~~-~L~GIvt~gDi~R~~~~~~~~~~~~~~~~~~~~~~~vs~v~t~~~   79 (133)
T cd04592           1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDD-FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-CEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf             9459989998599999999981886579983899-789997879999998762356456320001244432334564203


Q ss_pred             CHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             67885156579717885123234320135651165407766
Q gi|254780426|r  163 SESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGG  203 (320)
Q Consensus       163 ~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~  203 (320)
T Consensus        80 ~~~~~~~~~~tv~pd~~l~~a~~lM~~~~i~~LPVV~~~~~  120 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD  120 (133)
T ss_pred             EECCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCC
T ss_conf             62551100389789999999999999869885876707766