HHsearch alignment for GI: 254780426 and conserved domain: cd04595
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=1.5e-12 Score=102.15 Aligned_cols=107 Identities=22% Similarity=0.381 Sum_probs=93.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf 129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP 175 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp 175 (320)
T Consensus 2 spV~ti~p~~tv~ea~~~m~~~~i~~lpVvd~~--~lvGivT~~Di~~~~~~~~---------~~~~v~~iM~~~~~tv~ 70 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGG--RVVGIISRRDVEKALRHGL---------GHAPVKDYMSTDVVTVP 70 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECC--EEEEEEEHHHHHHHHHCCC---------CCCCCEEEEECCEEEEC
T ss_conf 898997995999999999997599889999899--9999997689887765376---------78812103253668866
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf 7885123234320135651165407766204667588999
Q gi|254780426|r 176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS 215 (320)
Q Consensus 176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle 215 (320)
T Consensus 71 ~~~~i~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~Dilk 109 (110)
T cd04595 71 PDTPLSEVQELMVEHDIGRVPVVED-GRLVGIVTRTDLLR 109 (110)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEHHHEEC
T ss_conf 9993999999889749139999989-99999998415615