HHsearch alignment for GI: 254780426 and conserved domain: cd04598
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=3.5e-10 Score=86.62 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=92.0
Q ss_pred EEEEEEECCCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC-CEEEC
Q ss_conf 299986301036778979865-9817998418866422410299999876622356432233345767885156-57971
Q gi|254780426|r 98 SINAVEDKATVYEAMLMFEKY-GRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKN-ILFVP 175 (320)
Q Consensus 98 ~i~~i~~~~~~~e~~~~i~~~-~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~-~~~Vp 175 (320)
T Consensus 2 pv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd~~--r~vGiisr~dl~~~~~~~~g~----~l~~~~pV~~~M~~~p~~v~ 75 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDG--RPVGLIMREALMELLSTPYGR----ALYGKKPVSEVMDPDPLIVE 75 (119)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECC--EEEEEEEHHHHHHHHCCCCCH----HHHCCCCHHHHCCCCCEEEC
T ss_conf 985749998499999999878996768998799--889999899999987074322----33038958997168987998
Q ss_pred CCCCHHHHHHHHHCCCCCCE---EEEECCCCCEEEEEHHHHHH
Q ss_conf 78851232343201356511---65407766204667588999
Q gi|254780426|r 176 SSMLVSDLLTNIQESRIRMA---LVIDEHGGTDGLVSYEDIVS 215 (320)
Q Consensus 176 e~~~l~~lL~~m~~~~~~~a---iVvDE~G~~~GiVTleDIle 215 (320)
T Consensus 76 ~~~~i~~~~~~~~~~~~~~l~~~ivV~~~g~~~Givt~~DLlr 118 (119)
T cd04598 76 ADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEHHHHHC
T ss_conf 9896999999998569332578858957998999989899407