HHsearch alignment for GI: 254780426 and conserved domain: cd04598

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13  E-value=3.5e-10  Score=86.62  Aligned_cols=112  Identities=17%  Similarity=0.265  Sum_probs=92.0

Q ss_pred             EEEEEEECCCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC-CEEEC
Q ss_conf             299986301036778979865-9817998418866422410299999876622356432233345767885156-57971
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKY-GRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKN-ILFVP  175 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~-~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~-~~~Vp  175 (320)
T Consensus         2 pv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd~~--r~vGiisr~dl~~~~~~~~g~----~l~~~~pV~~~M~~~p~~v~   75 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDG--RPVGLIMREALMELLSTPYGR----ALYGKKPVSEVMDPDPLIVE   75 (119)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECC--EEEEEEEHHHHHHHHCCCCCH----HHHCCCCHHHHCCCCCEEEC
T ss_conf             985749998499999999878996768998799--889999899999987074322----33038958997168987998


Q ss_pred             CCCCHHHHHHHHHCCCCCCE---EEEECCCCCEEEEEHHHHHH
Q ss_conf             78851232343201356511---65407766204667588999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMA---LVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~a---iVvDE~G~~~GiVTleDIle  215 (320)
T Consensus        76 ~~~~i~~~~~~~~~~~~~~l~~~ivV~~~g~~~Givt~~DLlr  118 (119)
T cd04598          76 ADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEHHHHHC
T ss_conf             9896999999998569332578858957998999989899407