HHsearch alignment for GI: 254780426 and conserved domain: cd04598
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.00 E-value=1.8e-05 Score=55.76 Aligned_cols=85 Identities=22% Similarity=0.358 Sum_probs=62.8
Q ss_pred CCCEEECCCCCHHHHHHHHHCC-CCCCEEEEECCCCCEEEEEHHHHHHHHHHHHH-HHCCCHHHCCCCCCCCEEEEECCC
Q ss_conf 5657971788512323432013-56511654077662046675889999874222-100000000124677337830453
Q gi|254780426|r 169 KNILFVPSSMLVSDLLTNIQES-RIRMALVIDEHGGTDGLVSYEDIVSVLMRDIT-SEHHSKKSMISAVSDNTFIVDART 246 (320)
Q Consensus 169 r~~~~Vpe~~~l~~lL~~m~~~-~~~~aiVvDE~G~~~GiVTleDIle~ivGei~-de~d~~~~~i~~~~~g~~~v~G~~ 246 (320)
T Consensus 1 rpv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd~-~r~vGiisr~dl~~~~~~~~g~~l~~~-~pV~~~M~~~p~~v~~~~ 78 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGK-KPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC-CEEEEEEEHHHHHHHHCCCCCHHHHCC-CCHHHHCCCCCEEECCCC
T ss_conf 998574999849999999987899676899879-988999989999998707432233038-958997168987998989
Q ss_pred CHHHHHHHH
Q ss_conf 599999982
Q gi|254780426|r 247 DLEELAKII 255 (320)
Q Consensus 247 ~l~~l~~~l 255 (320)
T Consensus 79 ~i~~~~~~~ 87 (119)
T cd04598 79 PLEEVSRLA 87 (119)
T ss_pred CHHHHHHHH
T ss_conf 699999999