HHsearch alignment for GI: 254780426 and conserved domain: cd04602
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.08 E-value=4.7e-06 Score=59.54 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf 04775764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r 83 RFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS 144 (320)
Q Consensus 83 ~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~ 144 (320)
T Consensus 53 ~~~~~~v~~iMt~~~~~i~~~~~~~l~ea~~~m~~~~i~~LPVVd~~g-~LvGiIT~~Di~k 113 (114)
T cd04602 53 TDSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDG-ELVALVTRSDLKK 113 (114)
T ss_pred CCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEECHHHCC
T ss_conf 076765635165276689947987899999999974966781997899-6999999244036