HHsearch alignment for GI: 254780426 and conserved domain: cd04604
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.46 E-value=4.2e-13 Score=105.72 Aligned_cols=112 Identities=16% Similarity=0.271 Sum_probs=98.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf 129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP 175 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp 175 (320)
T Consensus 2 ~~vp~V~~~~si~ea~~~m~~~~~~~v~Vvd~~~-~lvGiiT~~Dl~r~~~~~~~~-------~~~~v~~iM~~~~~tv~ 73 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDG-RLVGIFTDGDLRRALEKGLDI-------LTLPVADVMTRNPKTID 73 (114)
T ss_pred CCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHCCCCC-------CCCCHHHHHCCCCEEEE
T ss_conf 9477889949399999999976997899997999-399999899999998716664-------56797474356758993
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf 78851232343201356511654077662046675889999
Q gi|254780426|r 176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ 216 (320)
T Consensus 74 ~~~~i~~a~~~m~~~~i~~lpVvd~~~~~vGiit~~DllkA 114 (114)
T cd04604 74 PDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLRA 114 (114)
T ss_pred CCCCHHHHHHHHHHCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 89886999999987795799999899989999988995469