HHsearch alignment for GI: 254780426 and conserved domain: cd04609
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.72 E-value=0.00015 Score=49.72 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=59.7
Q ss_pred CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCC-CCCCEEEEECCCCH
Q ss_conf 65797178851232343201356511654077662046675889999874222100000000124-67733783045359
Q gi|254780426|r 170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISA-VSDNTFIVDARTDL 248 (320)
Q Consensus 170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~-~~~g~~~v~G~~~l 248 (320)
T Consensus 2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~-~~lvGiit~~Di~~~~~~~~~~~---~-~~v~~iM~~~~~~v~~~~~l 76 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKF---S-LPVREVMGEPLPTVDPDAPI 76 (110)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCC---C-CEEEEEEECCCEEECCCCCH
T ss_conf 8069999497999999999819988999989-99999999999999986387646---8-76984567594597898949
Q ss_pred HHHHHHHC
Q ss_conf 99999828
Q gi|254780426|r 249 EELAKIIG 256 (320)
Q Consensus 249 ~~l~~~l~ 256 (320)
T Consensus 77 ~~~~~~~~ 84 (110)
T cd04609 77 EELSELLD 84 (110)
T ss_pred HHHHHHHH
T ss_conf 99999887