HHsearch alignment for GI: 254780426 and conserved domain: cd04609

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.72  E-value=0.00015  Score=49.72  Aligned_cols=82  Identities=18%  Similarity=0.312  Sum_probs=59.7

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCC-CCCCEEEEECCCCH
Q ss_conf             65797178851232343201356511654077662046675889999874222100000000124-67733783045359
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISA-VSDNTFIVDARTDL  248 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~-~~~g~~~v~G~~~l  248 (320)
T Consensus         2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~-~~lvGiit~~Di~~~~~~~~~~~---~-~~v~~iM~~~~~~v~~~~~l   76 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKF---S-LPVREVMGEPLPTVDPDAPI   76 (110)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCC---C-CEEEEEEECCCEEECCCCCH
T ss_conf             8069999497999999999819988999989-99999999999999986387646---8-76984567594597898949


Q ss_pred             HHHHHHHC
Q ss_conf             99999828
Q gi|254780426|r  249 EELAKIIG  256 (320)
Q Consensus       249 ~~l~~~l~  256 (320)
T Consensus        77 ~~~~~~~~   84 (110)
T cd04609          77 EELSELLD   84 (110)
T ss_pred             HHHHHHHH
T ss_conf             99999887