HHsearch alignment for GI: 254780426 and conserved domain: cd04612
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.84 E-value=2.2e-05 Score=55.14 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=48.1
Q ss_pred CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHH
Q ss_conf 65797178851232343201356511654077662046675889999874222100000000124677337830453599
Q gi|254780426|r 170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLE 249 (320)
Q Consensus 170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~ 249 (320)
T Consensus 2 dvvtv~p~~tl~~a~~~m~~~~~~~lpVvd~-~~l~Givt~~di~~~~~~~~~~~----~~v~~im~~~~~~v~~~~~l~ 76 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREAT----VLVGDVMTRDPVTASPDETLR 76 (111)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCC----CEEEEEECCCCCCCCCCCCHH
T ss_conf 8499999295999999999719948999999-99999998999998775147777----569999707960529999799
Q ss_pred HHHHHH
Q ss_conf 999982
Q gi|254780426|r 250 ELAKII 255 (320)
Q Consensus 250 ~l~~~l 255 (320)
T Consensus 77 ~a~~~m 82 (111)
T cd04612 77 DALKRM 82 (111)
T ss_pred HHHHHH
T ss_conf 999999