HHsearch alignment for GI: 254780426 and conserved domain: cd04613
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.52 E-value=6.1e-14 Score=111.22 Aligned_cols=112 Identities=17% Similarity=0.230 Sum_probs=96.3
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf 129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP 175 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp 175 (320)
T Consensus 1 rdvvtv~~~~tl~ea~~~m~~~~~~~~pVvd~~~-~lvGiit~~Dl~~~l~~~~~-------~~~~~v~~im~~~~~~v~ 72 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDG-RLVGIVSLDDIREILFDPSL-------YDLVVASDIMTKPPVVVY 72 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHHCCC-------CCCCEEEHHCCCCCEEEE
T ss_conf 9976958909899999999861997899992899-49999999999999970566-------557293120362965991
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEE-CCCCCEEEEEHHHHHHH
Q ss_conf 788512323432013565116540-77662046675889999
Q gi|254780426|r 176 SSMLVSDLLTNIQESRIRMALVID-EHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 176 e~~~l~~lL~~m~~~~~~~aiVvD-E~G~~~GiVTleDIle~ 216 (320)
T Consensus 73 ~~~~l~~a~~~m~~~~~~~lPVVd~~~g~lvGiit~~Dil~A 114 (114)
T cd04613 73 PEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA 114 (114)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 367889999999975975999998999989999998995359