HHsearch alignment for GI: 254780426 and conserved domain: cd04613

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.52  E-value=6.1e-14  Score=111.22  Aligned_cols=112  Identities=17%  Similarity=0.230  Sum_probs=96.3

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
T Consensus         1 rdvvtv~~~~tl~ea~~~m~~~~~~~~pVvd~~~-~lvGiit~~Dl~~~l~~~~~-------~~~~~v~~im~~~~~~v~   72 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDG-RLVGIVSLDDIREILFDPSL-------YDLVVASDIMTKPPVVVY   72 (114)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHHCCC-------CCCCEEEHHCCCCCEEEE
T ss_conf             9976958909899999999861997899992899-49999999999999970566-------557293120362965991


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEE-CCCCCEEEEEHHHHHHH
Q ss_conf             788512323432013565116540-77662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVID-EHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvD-E~G~~~GiVTleDIle~  216 (320)
T Consensus        73 ~~~~l~~a~~~m~~~~~~~lPVVd~~~g~lvGiit~~Dil~A  114 (114)
T cd04613          73 PEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA  114 (114)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             367889999999975975999998999989999998995359