HHsearch alignment for GI: 254780426 and conserved domain: cd04614

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22  E-value=2.4e-11  Score=94.18  Aligned_cols=94  Identities=18%  Similarity=0.288  Sum_probs=86.9

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEECCC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851565797178
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPSS  177 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~~~~Vpe~  177 (320)
T Consensus         2 dv~tv~~~~~v~~a~~~m~~~~i~~lpVvd~~g-~lvGIiT~rDli~-----------------------~~~~itv~~~   57 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDG-KLSGIITERDLIA-----------------------KSEVVTATKR   57 (96)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEECHHHCC-----------------------CCCCEEECCC
T ss_conf             963908969899999999972998799998999-4999998888825-----------------------7788797998


Q ss_pred             CCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             85123234320135651165407766204667588999
Q gi|254780426|r  178 MLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       178 ~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
T Consensus        58 ~~v~eaa~lM~~~~I~~LPVvd~~~~lvGiit~~Dllk   95 (96)
T cd04614          58 TTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHCCC
T ss_conf             90999999999859988628989991999988798048