HHsearch alignment for GI: 254780426 and conserved domain: cd04622
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=1.9e-13 Score=108.01 Aligned_cols=110 Identities=21% Similarity=0.318 Sum_probs=95.3
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHH-HHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf 2999863010367789798659817998418866422410299999-8766223564322333457678851-5657971
Q gi|254780426|r 98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI-SYISHMYAKTNNINLNIQLSESNLI-KNILFVP 175 (320)
Q Consensus 98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll-~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp 175 (320)
T Consensus 2 ~~vti~~~~tl~~a~~~m~~~~~~~v~V~d~--~~~vGiiT~~Di~~~~~~~~~~-------~~~~~v~~iM~~~~i~v~ 72 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRD-------PDTTTVGDVMTRGVVTVT 72 (113)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEECHHHHHHHHHCCCC-------HHHCCHHHHHCCCCEEEE
T ss_conf 9779689398999999999729988999989--9999999632788999973998-------200776786415767998
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf 78851232343201356511654077662046675889999
Q gi|254780426|r 176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ 216 (320)
T Consensus 73 ~~~~l~~a~~~m~~~~i~~lpVvd~~~~~vGiIt~~Dilra 113 (113)
T cd04622 73 EDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113 (113)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 89987999999985796589999089989999997995477