HHsearch alignment for GI: 254780426 and conserved domain: cd04622
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.16 E-value=1.7e-06 Score=62.39 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=43.0
Q ss_pred HCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHH
Q ss_conf 304775764131200129998630103677897986598179984188664224102999998
Q gi|254780426|r 82 LRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVIS 144 (320)
Q Consensus 82 l~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~ 144 (320)
T Consensus 53 ~~~~~~~v~~iM~~--~~i~v~~~~~l~~a~~~m~~~~i~~lpVvd~~~-~~vGiIt~~Dilr 112 (113)
T cd04622 53 RDPDTTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDG-RLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHCCHHHHHCC--CCEEEECCCCHHHHHHHHHHCCCCEEEEEECCC-EEEEEEEHHHHHC
T ss_conf 98200776786415--767998899879999999857965899990899-8999999799547