HHsearch alignment for GI: 254780426 and conserved domain: cd04624

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49  E-value=6.5e-14  Score=111.05  Aligned_cols=110  Identities=20%  Similarity=0.334  Sum_probs=96.9

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
T Consensus         2 ~vvtv~~~~tl~ea~~~m~~~~~~~~~Vvd~~~-~lvGiiT~~Di~~~~~~~~~--------~~~~v~~~m~~~~~tv~~   72 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDE-RPIGIVTERDIVRAVAAGID--------LDTPVSEIMTRDLVTVDP   72 (112)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEECCHHHHHHHCCCC--------CCCCEEEEECCCCEEECC
T ss_conf             978978939599999999862998899993998-29999982045889864874--------344204565167167879


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             8851232343201356511654077662046675889999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
T Consensus        73 ~~~l~~a~~~m~~~~~~~l~Vvd~~g~lvGiit~~Dilke  112 (112)
T cd04624          73 DEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE  112 (112)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHCCC
T ss_conf             9989999999997498399899899999999980772569