HHsearch alignment for GI: 254780426 and conserved domain: cd04624
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=6.5e-14 Score=111.05 Aligned_cols=110 Identities=20% Similarity=0.334 Sum_probs=96.9
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf 29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r 98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS 176 (320)
Q Consensus 98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe 176 (320)
T Consensus 2 ~vvtv~~~~tl~ea~~~m~~~~~~~~~Vvd~~~-~lvGiiT~~Di~~~~~~~~~--------~~~~v~~~m~~~~~tv~~ 72 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDE-RPIGIVTERDIVRAVAAGID--------LDTPVSEIMTRDLVTVDP 72 (112)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEECCHHHHHHHCCCC--------CCCCEEEEECCCCEEECC
T ss_conf 978978939599999999862998899993998-29999982045889864874--------344204565167167879
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf 8851232343201356511654077662046675889999
Q gi|254780426|r 177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ 216 (320)
T Consensus 73 ~~~l~~a~~~m~~~~~~~l~Vvd~~g~lvGiit~~Dilke 112 (112)
T cd04624 73 DEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112 (112)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHCCC
T ss_conf 9989999999997498399899899999999980772569